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LOCUS NC_003197 4857450 bp DNA circular CON 08-SEP-2022 complete genome. ACCESSION NC_003197 VERSION NC_003197.2 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (bases 1 to 4857450) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (bases 1 to 4857450) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (bases 1 to 4857450) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (bases 1 to 4857450) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AE006468. On Dec 2, 2016 this sequence version replaced NC_003197.1. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. COMPLETENESS: full length. FEATURES Location/Qualifiers source order(1..962614,1004279..1098230,1143703..2728972, 2776826..2844430,2879238..4857450) /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /mol_type="genomic DNA" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus source 962615..1004278 /organism="Salmonella phage Fels-1" /mol_type="genomic DNA" /db_xref="taxon:128975" source 1098231..1143702 /organism="Phage Gifsy-2" /mol_type="genomic DNA" /db_xref="taxon:129862" source 2728973..2776825 /organism="Phage Gifsy-1" /mol_type="genomic DNA" /db_xref="taxon:129861" source 2844431..2879237 /organism="Salmonella virus Fels2" /mol_type="genomic DNA" /db_xref="taxon:194701" gene 190..255 /gene="thrL" /locus_tag="STM0001" /db_xref="GeneID:1251519" CDS 190..255 /gene="thrL" /locus_tag="STM0001" /note="similar to E. coli thr operon leader peptide (AAC73112.1); Blastp hit to AAC73112.1 (21 aa), 85-1073758644dentity in aa 1 - 21" /codon_start=1 /transl_table=11 /product="thr operon leader peptide" /protein_id="NP_459006.1" /db_xref="GeneID:1251519" /translation="MNRISTTTITTITITTGNGAG" gene 325..2799 /gene="thrA" /locus_tag="STM0002" /db_xref="GeneID:1251520" regulatory 325..330 /regulatory_class="ribosome_binding_site" /gene="thrA" /locus_tag="STM0002" /note="putative RBS for thrA; RegulonDB:STMS1H000398" CDS 337..2799 /gene="thrA" /locus_tag="STM0002" /EC_number="1.1.1.3" /EC_number="2.7.2.4" /note="bifunctional; N-terminaus is aspartokinase I and C terminus is homoserine dehydrogenase I; similar to E. coli aspartokinase I, homoserine dehydrogenase I (AAC73113.1); Blastp hit to AAC73113.1 (820 aa), 94% identity in aa 1 - 820" /codon_start=1 /transl_table=11 /product="aspartokinase I" /protein_id="NP_459007.1" /db_xref="GeneID:1251520" /translation="MRVLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKIT NHLVAMIEKTIGGQDALPNISDAERIFSDLLAGLASAQPGFPLARLKMVVEQEFAQIK HVLHGISLLGQCPDSINAALICRGEKMSIAIMAGLLEARGHRVTVIDPVEKLLAVGHY LESTVDIAESTRRIAASQIPADHMILMAGFTAGNEKGELVVLGRNGSDYSAAVLAACL RADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQF QIPCLIKNTGNPQAPGTLIGASSDDDNLPVKGISNLNNMAMFSVSGPGMKGMIGMAAR VFAAMSRAGISVVLITQSSSEYSISFCVPQSDCARARRAMQDEFYLELKEGLLEPLAV TERLAIISVVGDGMRTLRGISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATT GVRVTHQMLFNTDQVIEVFVIGVGGVGGALLEQLKRQQTWLKNKHIDLRVCGVANSKA LLTNVHGLNLDNWQAELAQANAPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYAD FLREGFHVVTPNKKANTSSMDYYHQLRFAAAQSRRKFLYDTNVGAGLPVIENLQNLLN AGDELQKFSGILSGSLSFIFGKLEEGMSLSQATALAREMGYTEPDPRDDLSGMDVARK LLILARETGRELELSDIVIEPVLPNEFDASGDVTAFMAHLPQLDDAFAARVAKARDEG KVLRYVGNIEEDGVCRVKIAEVDGNDPLFKVKNGENALAFYSHYYQPLPLVLRGYGAG NDVTAAGVFADLLRTLSWKLGV" misc_feature 337..2796 /gene="thrA" /locus_tag="STM0002" /note="bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional; Region: thrA; PRK09436" /db_xref="CDD:181856" gene 2789..3730 /gene="thrB" /locus_tag="STM0003" /db_xref="GeneID:1251521" regulatory 2789..2794 /regulatory_class="ribosome_binding_site" /gene="thrB" /locus_tag="STM0003" /note="putative RBS for thrB; RegulonDB:STMS1H000399" CDS 2801..3730 /gene="thrB" /locus_tag="STM0003" /EC_number="2.7.1.39" /note="similar to E. coli homoserine kinase (AAC73114.1); Blastp hit to AAC73114.1 (310 aa), 93% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="homoserine kinase" /protein_id="NP_459008.1" /db_xref="GeneID:1251521" /translation="MVKVYAPASSANMSVGFDVLGAAVTPVDGTLLGDVVSVEAADHF RLHNLGRFADKLPPEPRENIVYQCWERFCQALGKTIPVAMTLEKNMPIGSGLGSSACS VVAALVAMNEHCGKPLNDTRLLALMGELEGRISGSIHYDNVAPCFLGGMQLMIEENGI ISQQVPGFDEWLWVLAYPGIKVSTAEARAILPAQYRRQDCIAHGRHLAGFIHACYSRQ PQLAAALMKDVIAEPYRARLLPGFSQARQAVSEIGALASGISGSGPTLFALCDKPETA QRVADWLSKHYLQNQEGFVHICRLDTAGARVVG" misc_feature 2801..3724 /gene="thrB" /locus_tag="STM0003" /note="homoserine kinase; Provisional; Region: PRK01212" /db_xref="CDD:234920" gene 3722..5020 /gene="thrC" /locus_tag="STM0004" /db_xref="GeneID:1251522" regulatory 3722..3727 /regulatory_class="ribosome_binding_site" /gene="thrB" /locus_tag="STM0003" /note="putative RBS for thrC; RegulonDB:STMS1H000400" CDS 3734..5020 /gene="thrC" /locus_tag="STM0004" /EC_number="4.2.3.1" /note="similar to E. coli threonine synthase (AAC73115.1); Blastp hit to AAC73115.1 (428 aa), 93% identity in aa 1 - 428" /codon_start=1 /transl_table=11 /product="threonine synthase" /protein_id="NP_459009.1" /db_xref="GeneID:1251522" /translation="MKLYNLKDHNEQVSFAQAVTQGLGKQQGLFFPHDLPEFSLTEID EMLNQDFVSRSAKILSAFIGDEIPQQILEERVRAAFAFPAPVAQVESDVGCLELFHGP TLAFKDFGGRFMAQMLTHISGDKPVTILTATSGDTGAAVAHAFYGLENVRVVILYPRG KISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKTALGLNSANSINISR LLAQICYYFEAVAQLPQGARNQLVISVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN DTVPRFLHDGKWAPKATQATLSNAMDVSQPNNWPRVEELFRRKIWRLTELGYAAVDDT TTQQTMRELKAKGYISEPHAAVAYRALRDQLNPGEYGLFLGTAHPAKFKESVESILGE TLALPEALAERADLPLLSHHLPADFAALRKLMMTRQ" misc_feature 3737..5002 /gene="thrC" /locus_tag="STM0004" /note="Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan...; Region: Trp-synth-beta_II; cl00342" /db_xref="CDD:444852" misc_feature order(4049..4054,4139..4141,4475..4489,4790..4792, 4859..4864) /gene="thrC" /locus_tag="STM0004" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:107202" misc_feature 4052..4054 /gene="thrC" /locus_tag="STM0004" /note="catalytic residue [active]" /db_xref="CDD:107202" gene complement(5114..5898) /gene="yaaA" /locus_tag="STM0005" /db_xref="GeneID:1251523" CDS complement(5114..5887) /gene="yaaA" /locus_tag="STM0005" /note="similar to E. coli orf, hypothetical protein (AAC73117.1); Blastp hit to AAC73117.1 (258 aa), 86% identity in aa 1 - 257" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459010.1" /db_xref="GeneID:1251523" /translation="MLILISPAKTLDYQSPLATTRYTQPELLDHSQQLIQQARQLSAP QISRLMGISDKLADLNATRFHDWQPHFTPDNARQAILAFKGDVYTGLQAETFNDADFD FAQQHLRMLSGLYGVLRPLDLMQPYRLEMGIRLENPRGKDLYQFWGDIITDKLNEALE AQGDRVVVNLASEEYFKSVKPKKLNAELIKPVFLDEKNGKFKVVSFYAKKARGLMSRF IIENRLTKPEQLTAFDREGYFFDEETSTQDELVFKRYEQ" misc_feature complement(5126..5884) /gene="yaaA" /locus_tag="STM0005" /note="DNA-binding protein YaaA associated with the oxidative stress response [Replication, recombination and repair]; Region: YaaA; COG3022" /db_xref="CDD:442258" regulatory complement(5893..5898) /regulatory_class="ribosome_binding_site" /gene="yaaA" /locus_tag="STM0005" /note="putative RBS for yaaA; RegulonDB:STMS1H000401" gene complement(5966..7407) /gene="yaaJ" /locus_tag="STM0006" /db_xref="GeneID:1251524" CDS complement(5966..7396) /gene="yaaJ" /locus_tag="STM0006" /note="AGCS family; similar to E. coli inner membrane transport protein (AAC73118.1); Blastp hit to AAC73118.1 (476 aa), 76% identity in aa 1 - 476" /codon_start=1 /transl_table=11 /product="putative alanine/glycine transport protein" /protein_id="NP_459011.1" /db_xref="GeneID:1251524" /translation="MPEFFSFINEILWGSVMIYLLLGAGCWFTWRTGFIQFRYIRQFS RSLKGSLSPQPGGLTSFQALCTSLAARIGSGNLAGVALAIAAGGPGAVFWMWVSAIIG MATSFAECSLAQLYKERDPTGQFRGGPAWYMARGLGMRWMGVVFALFLLVAYGLIFNS VQANAVSRALHFAFNIPPLISGIALAFCALLIIIRGIKGVARLMQWLIPLIALLWVAG SVFICLWHIEQMPGVIASIVKSAFGWQEAAAGAAGYTLTQAITSGFQRGMFSNEAGMG STPNAAAAATSYPPHPVAQGIVQMIGVFSDTIIICTASAMIILLAGNHASHSSTEGIQ LLQHAMVSLTGEWGASFVALIVILFAFSSIVANYIYAENNLFFLRLHNAKAIWLLRLA TLGMVIAGTLISFPLIWQLADMIMACMAITNLTAILLLSPVVYTLASDYLRQRKLGVR PQFDPRRFPDIEPQLAPDTWEAASRD" misc_feature complement(6053..7396) /gene="yaaJ" /locus_tag="STM0006" /note="Na+/alanine symporter [Amino acid transport and metabolism]; Region: AlsT; COG1115" /db_xref="CDD:440732" regulatory complement(7402..7407) /regulatory_class="ribosome_binding_site" /gene="yaaJ" /locus_tag="STM0006" /note="putative RBS for yaaJ; RegulonDB:STMS1H000402" gene 7652..8618 /gene="talB" /locus_tag="STM0007" /db_xref="GeneID:1251525" regulatory 7652..7657 /regulatory_class="ribosome_binding_site" /gene="talB" /locus_tag="STM0007" /note="putative RBS for talB; RegulonDB:STMS1H000403" CDS 7665..8618 /gene="talB" /locus_tag="STM0007" /EC_number="2.2.1.2" /note="similar to E. coli transaldolase B (AAC73119.1); Blastp hit to AAC73119.1 (317 aa), 94% identity in aa 1 - 317" /codon_start=1 /transl_table=11 /product="transaldolase B" /protein_id="NP_459012.1" /db_xref="GeneID:1251525" /translation="MTDKLTSLRQFTTVVADTGDIAAMKLYQPQDATTNPSLILNAAQ IPEYRKLIDDAVAWAKQQSSDRAQQVVDATDKLAVNIGLEILKLVPGRISTEVDARLS YDTEASIAKAKRIIKLYNDAGISNDRILIKLASTWQGIRAAEQLEKEGINCNLTLLFS FAQARACAEAGVYLISPFVGRILDWYKANTDKKDYAPAEDPGVVSVTEIYEYYKQHGY ETVVMGASFRNVGEILELAGCDRLTIAPALLKELAESEGAIERKLSFSGEVKARPERI TEAEFLWQHHQDPMAVDKLADGIRKFAVDQEKLEKMIGDLL" misc_feature 7665..8615 /gene="talB" /locus_tag="STM0007" /note="transaldolase B; Provisional; Region: PRK05269" /db_xref="CDD:235381" misc_feature order(7713..7715,7761..7763,7767..7772,7944..7946, 7950..7952,8058..8060,8124..8126,8130..8132,8190..8192, 8205..8207) /gene="talB" /locus_tag="STM0007" /note="active site" /db_xref="CDD:188644" misc_feature order(7974..7976,8499..8501,8508..8510,8520..8525, 8541..8543,8550..8552,8562..8564) /gene="talB" /locus_tag="STM0007" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188644" misc_feature 8058..8060 /gene="talB" /locus_tag="STM0007" /note="catalytic residue [active]" /db_xref="CDD:188644" gene 8718..9319 /gene="mog" /locus_tag="STM0008" /db_xref="GeneID:1251526" regulatory 8718..8723 /regulatory_class="ribosome_binding_site" /gene="mog" /locus_tag="STM0008" /note="putative RBS for mog; RegulonDB:STMS1H000404" CDS 8729..9319 /gene="mog" /locus_tag="STM0008" /note="molybdopterine biosynthesis; similar to E. coli required for the efficient incorporation of molybdate into molybdoproteins (AAC73120.1); Blastp hit to AAC73120.1 (195 aa), 91% identity in aa 1 - 192" /codon_start=1 /transl_table=11 /product="putative molybdochetalase" /protein_id="NP_459013.1" /db_xref="GeneID:1251526" /translation="MDTLRIGLVSISDRASSGVYQDKGIPALEEWLASALTTPFEVQR RLIPDEQEIIEQTLCELVDEMSCHLVLTTGGTGPARRDVTPDATLAIADREMPGFGEQ MRQISLRFVPTAILSRQVGVIRKQALILNLPGQPKSIKETLEGVKADDGSVSVPGIFA SVPYCIQLLDGPYVETAPEVVAAFRPKSARRENMSD" misc_feature 8729..9304 /gene="mog" /locus_tag="STM0008" /note="molybdenum cofactor biosynthesis protein MogA; Provisional; Region: mogA; PRK09417" /db_xref="CDD:181837" misc_feature order(8951..8959,9047..9049,9125..9130,9140..9142, 9149..9151) /gene="mog" /locus_tag="STM0008" /note="MPT binding site [active]" /db_xref="CDD:238451" misc_feature order(8957..8959,8963..8968,8972..8974,8984..8986, 9008..9016,9029..9031,9038..9043,9071..9073,9080..9082, 9233..9235) /gene="mog" /locus_tag="STM0008" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238451" gene complement(9376..9950) /gene="yaaH" /locus_tag="STM0009" /db_xref="GeneID:1251527" CDS complement(9376..9942) /gene="yaaH" /locus_tag="STM0009" /note="similar to E. coli orf, hypothetical protein (AAC73121.1); Blastp hit to AAC73121.1 (188 aa), 90% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="putative regulatory protein" /protein_id="NP_459014.1" /db_xref="GeneID:1251527" /translation="MGNTKLANPAPLGLMGFGMTTILLNLHNAGFFALDGIILAMGIF YGGIAQIFAGLLEYKKGNTFGLTAFTSYGSFWLTLVAILLMPKMGLTDAPDAQLLGAY LGLWGVFTLFMFFGTLKAARALQFVFLSLTVLFALLAVGNITGNEATIHIAGWVGLVC GASAIYLAMGEVLNEQFGRTILPIGEAH" misc_feature complement(9379..9942) /gene="yaaH" /locus_tag="STM0009" /note="acetate uptake transporter; Region: PRK10659" /db_xref="CDD:182625" regulatory complement(9945..9950) /regulatory_class="ribosome_binding_site" /gene="yaaH" /locus_tag="STM0009" /note="putative RBS for yaaH; RegulonDB:STMS1H000405" gene complement(10092..10811) /gene="htgA" /locus_tag="STM0010" /db_xref="GeneID:1251528" CDS complement(10092..10805) /gene="htgA" /locus_tag="STM0010" /note="functions on sigma 32 promoters permitting growth at high temperature; similar to E. coli putative oxidoreductase (AAC73122.1); Blastp hit to AAC73122.1 (237 aa), 87% identity in aa 1 - 236" /codon_start=1 /transl_table=11 /product="positive sigma H regulator" /protein_id="NP_459015.1" /db_xref="GeneID:1251528" /translation="MNVTYLHDEDLDFLQHCSEEQLADFARLLTHNEKGKARLSSVLS HNELFKAMEGHPEQHRRNWQLIAGEFQHYGGDSIANKLRGHGKQYRAILLDVAKRLKL KADKSMSTFEIEQQLLEHFLRHTWQKMDAAHKQEFLQAVDAKVSELEELLPLLMKDRS LAKGVSHLLSTQLTRILRTHAAMSILGHGLLRGAGLGGPVGAALNGVKAMSGSAYRVT IPAVLQIACLRRMMAAVQA" misc_feature complement(10095..10805) /gene="htgA" /locus_tag="STM0010" /note="acidic protein MsyB; Region: PRK10236" /db_xref="CDD:182323" regulatory complement(10806..10811) /regulatory_class="ribosome_binding_site" /gene="htgA" /locus_tag="STM0010" /note="putative RBS for htgA; RegulonDB:STMS1H000406" gene complement(10841..11255) /gene="yaaI" /locus_tag="STM0011" /db_xref="GeneID:1251529" CDS complement(10841..11245) /gene="yaaI" /locus_tag="STM0011" /note="similar to E. coli orf, hypothetical protein (AAC73124.1); Blastp hit to AAC73124.1 (134 aa), 81% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459016.1" /db_xref="GeneID:1251529" /translation="MRSVLTISVGLLFGLALSSVAHANDHKILGVIAMPRNETNDLTL KIPVCRIVKRIQLTADHGDIELSGASVYFKTARSASQSLNVPSSIKEGQTTGWININS DNDNKRCVSKITFSGHTVNSSDMARLKVIGDD" misc_feature complement(10844..11245) /gene="yaaI" /locus_tag="STM0011" /note="DUF2541 family protein; Region: PRK10154" /db_xref="CDD:182272" regulatory complement(11250..11255) /regulatory_class="ribosome_binding_site" /gene="yaaI" /locus_tag="STM0011" /note="putative RBS for yaaI; RegulonDB:STMS1H000407" gene 11579..13509 /gene="dnaK" /locus_tag="STM0012" /db_xref="GeneID:1251530" regulatory 11579..11584 /regulatory_class="ribosome_binding_site" /gene="dnaK" /locus_tag="STM0012" /note="putative RBS for dnaK; RegulonDB:STMS1H000408" CDS 11593..13509 /gene="dnaK" /locus_tag="STM0012" /note="DNAK protein; heat shock protein 70; HSP70; involved in DNA biosynthesis and cell division; (SW:DNAK_SALTY)" /codon_start=1 /transl_table=11 /product="chaperone Hsp70" /protein_id="NP_459017.1" /db_xref="GeneID:1251530" /translation="MGKIIGIDLGTTNSCVAIMDGTQARVLENAEGDRTTPSIIAYTQ DGETLVGQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPYKIIGADNGDAW LDVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRI AGLEVKRIINEPTAAALAYGLDKEVGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEV LATNGDTHLGGEDFDTRLINYLVDEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSA QQTDVNLPYITADATGPKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVSDI NDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDEAVAIGAAVQGGVLTGDVKDVLLL DVTPLSLGIETMGGVMTPLITKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRASD NKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN EEEIQKMVRDAEANAESDRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE SALNALETALKGEDKAAIEAKMQELAQVSQKLMEIAQQQHAQQQAGSADASANNAKDD DVVDAEFEEVKDKK" misc_feature 11593..13506 /gene="dnaK" /locus_tag="STM0012" /note="molecular chaperone DnaK; Provisional; Region: dnaK; PRK00290" /db_xref="CDD:234715" gene 13577..14734 /gene="dnaJ" /locus_tag="STM0013" /db_xref="GeneID:1251531" regulatory 13577..13582 /regulatory_class="ribosome_binding_site" /gene="dnaJ" /locus_tag="STM0013" /note="putative RBS for dnaJ; RegulonDB:STMS1H000409" CDS 13595..14734 /gene="dnaJ" /locus_tag="STM0013" /note="chaperone protein DnaJ; GrpE; stimulates ATPase activity of DnaK; (SW:DNAJ_SALTY)" /codon_start=1 /transl_table=11 /product="heat shock protein DnaJ" /protein_id="NP_459018.1" /db_xref="GeneID:1251531" /translation="MAKRDYYEILGVSKTAEEREIKKAYKRLAMKYHPDRNQGDKEAE AKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGGADFSDIFGDVFG DIFGGGRGRQRAARGADLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGAKAGTQ PQTCPTCHGSGQVQMRQGFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEKSKTLSVK IPAGVDTGDRIRLAGEGEAGEHGAPAGDLYVQVQVKQHPIFEREGNNLYCEVPINFAM AALGGEIEVPTLDGRVMLKVPSETQTGKLFRMRGKGVKSVRGGAQGDLLCRVVVETPV GLSEKQKQLLKDLQESFGGPTGEKNSPRSKSFFDGVKKFFDDLTR" misc_feature 13595..14719 /gene="dnaJ" /locus_tag="STM0013" /note="chaperone protein DnaJ; Provisional; Region: PRK10767" /db_xref="CDD:236757" gene 15007..15961 /locus_tag="STM0014" /db_xref="GeneID:1251532" regulatory 15007..15012 /regulatory_class="ribosome_binding_site" /locus_tag="STM0014" /note="putative RBS for STM0014; RegulonDB:STMS1H000410" CDS 15014..15961 /locus_tag="STM0014" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73704.1); Blastp hit to AAC73704.1 (300 aa), 25% identity in aa 8 - 296" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459019.1" /db_xref="GeneID:1251532" /translation="MGSKGANKSFDYNLIKILDAVILSGNAAMAAKKLGITPAAVSLA LKRLQSYYPEELFSRGKGGLIPTAKAVDIHQNFSQVMKLVDDTFLCNSKKDEAFQITL LGSDIVESYYLSQLYNSDIFDRILINHFSVRNMSREHISELLFTAQGDLLISAEPLLE SGIENQIIDSFKSFVCICSSKHMLSTLSQLSLHHFYSSRHALYQPGMGASVIYHDSEL FKDDLYYTGRRIVGYRSDSLNGLMSMIERTSLIALIPLKLALFYKNHRKYDIKFIQPP PELALKSVQVYASWNKNSRNISTINEMVSMLQTLSSFRR" misc_feature 15050..15217 /locus_tag="STM0014" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature 15314..15889 /locus_tag="STM0014" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" misc_feature order(15353..15358,15362..15367,15380..15382,15392..15394, 15398..15415,15704..15706,15710..15724,15740..15745, 15749..15754) /locus_tag="STM0014" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 16083..16432 /locus_tag="STM0015" /db_xref="GeneID:1251533" regulatory 16083..16088 /regulatory_class="ribosome_binding_site" /locus_tag="STM0015" /note="putative RBS for STM0015; RegulonDB:STMS1H000411" CDS 16088..16432 /locus_tag="STM0015" /codon_start=1 /transl_table=11 /product="putative bacteriophage protein" /protein_id="NP_459020.1" /db_xref="GeneID:1251533" /translation="MSIPNHVSTTEVVLLELEILLTIISIGAWGGFVSYLLRKDKTEY NSSHESIKYCLTQIVISCFTSFLLSAIAIEKECSFNIVLLAAGLGGVFASPILKILGR RIKKIIEGNNSD" misc_feature 16163..16387 /locus_tag="STM0015" /note="LydA holin phage, holin superfamily III; Region: Phage_holin_3_3; pfam16083" /db_xref="CDD:435126" gene complement(16493..17033) /locus_tag="STM0016" /db_xref="GeneID:1251534" CDS complement(16493..17026) /locus_tag="STM0016" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459021.1" /db_xref="GeneID:1251534" /translation="MNPIIDGIIALEGGYVFNPKDKGGATHWGITEATARAHGYAGDM RDLTHAEAYAILEEDYWIKPGFDVISTLSWPVSFELCDAAVNIGAYHPSAWLQRWLNV FNHEGKRYPDIHVDGNIGPRTLAALEHYLAWRGQEGEAVLVKALNCSQGTYYLNVAEK NHNNEQFIYGWIKNRVT" misc_feature complement(16499..17026) /locus_tag="STM0016" /note="Lysozyme family protein [General function prediction only]; Region: ZliS; COG3926" /db_xref="CDD:443130" regulatory complement(17028..17033) /regulatory_class="ribosome_binding_site" /locus_tag="STM0016" /note="putative RBS for STM0016; RegulonDB:STMS1H000412" gene complement(17043..17493) /locus_tag="STM0017" /db_xref="GeneID:1251535" CDS complement(17043..17486) /locus_tag="STM0017" /note="similar to E. coli putative sensory transducer (AAC75886.1); Blastp hit to AAC75886.1 (269 aa), 30% identity in aa 3 - 109" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459022.1" /db_xref="GeneID:1251535" /translation="MKTYIINSNCIYNEGKYELRTVSNSQVIKMTAMRAKCLSFIIEN AHLEIIERQKITTALWGSRSHYVNDANLTQILYLIRRDLKALGINDLFITIPRQGLKV NSDITIIATDSETKGRKKQIVRQTIAALTTVFSVTLGSLMYLHIH" misc_feature complement(17151..17483) /locus_tag="STM0017" /note="DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; Region: CadC1; COG3710" /db_xref="CDD:442924" regulatory complement(17488..17493) /regulatory_class="ribosome_binding_site" /locus_tag="STM0017" /note="putative RBS for STM0017; RegulonDB:STMS1H000413" gene 17860..19966 /locus_tag="STM0018" /db_xref="GeneID:1251536" regulatory 17860..17865 /regulatory_class="ribosome_binding_site" /locus_tag="STM0018" /note="putative RBS for STM0018; RegulonDB:STMS1H000414" CDS 17867..19966 /locus_tag="STM0018" /codon_start=1 /transl_table=11 /product="putative exochitinase" /protein_id="NP_459023.1" /db_xref="GeneID:1251536" /translation="MATSKLIQGDTITETTHAANGFDPATSDDKISYTSARVAKPVYN KYKNSTTKPKVFGYYTDWSQYDSRLQGNMSQPGRGYDLTKVSPTAYDKLIFGFVGITG FRKIDTEDRDVVAEAAALCGKVKYEPTFLDPWGDFQSYINLGFDVSGWDVDPKTVTQS NAKGLLGALRDMQAKAKAAGHTLALSMSIGGWSMSNGFHETAASDSSRKIFAKGVVKL FKQFPMFSEVDIDWEYPNNEGAGNPFGPEDGANYALLIAELRKQLDSAGLSNVKISIA ASAVTTIFDYAKVKDLMAAGLYGINLMTYDFFGTPWAETLGHHTNRKALEEGGWAVET IVDHLLAEGFSADRINIGYAGYTRNARQVEIESLSPLKGSYNPGSGPTTGSFESGTSE WYDVIYSYLDLENQKGRNGFNVYTDQVADADYLYSPESKLFLSLDTPRTVKAKGEYAA KLGLGGVFTWTIDQDNGVLVNAVREGLGYEIESEVIDMEPFYFEGINVEKDEEQSDSD DAQKVNHAPKAAIELMVVGGSTVQLSGAGSSDEDNDELSFSWGVPSQIDVADKTAEII EVVVPEVSEKTAFQFTLFVRDCYNEPSSQQRFVLTAVPALSQVQPEPEEEEEIIVPVP DEEEDTTPAEDDTPADDKTSPYAQWDASTVYGANWGSFEIVSWKGHNYQVKWWSMGNQ PDLNCGVGGAWTDLGAY" misc_feature 18029..19261 /locus_tag="STM0018" /note="The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an...; Region: GH18_chitinase; cd06548" /db_xref="CDD:119365" misc_feature order(18038..18040,18155..18157,18551..18553,18557..18559, 18563..18565,18773..18775,18779..18784,18932..18934, 19244..19246) /locus_tag="STM0018" /note="active site" /db_xref="CDD:119365" misc_feature <19403..19627 /locus_tag="STM0018" /note="myxosortase-dependent M36 family metallopeptidase; Region: myxo_dep_M36; NF038112" /db_xref="CDD:468355" misc_feature 19805..19951 /locus_tag="STM0018" /note="Chitin-binding domain of chitinase C; Region: ChiC_BD; cd12215" /db_xref="CDD:213178" gene 20051..23054 /locus_tag="STM0019" /db_xref="GeneID:1251537" regulatory 20051..20056 /regulatory_class="ribosome_binding_site" /locus_tag="STM0019" /note="putative RBS for STM0019; RegulonDB:STMS1H000415" CDS 20058..23054 /locus_tag="STM0019" /codon_start=1 /transl_table=11 /product="putative hydroxymethyltransferase" /protein_id="NP_459024.1" /db_xref="GeneID:1251537" /translation="MTISIHASAFDVNSWYQKITLTFINESGNAVDMNHAAISFTASG HIDPWGNSGGTLKGNLPLTLNESSYGTLETNNIIINNSDALLLQPGERGTLSFSLAAT QVPVKMSAITLTLASSSSEDAESATPSDQETPAIPAADEQPAEPDVPEKDNDLQEHGL TLNVSELNTASWYQRVTFTLTNLYAQAVDLNQLQLNFTASAHPDPYSPFQGTMLGNQA VTLASDGGWPIEKNTITINHDGALILAAGDTAELQCYLAATQTPVAISDLNATLAHDP ARQGKVCVHFPAMTQTVALKPVIELLFPAGETRRFVGEWGEVLTIGDLSAGTYRLTVP VLANDEMQIAPVESSFTVTLQSGDAAAQVQVSCLPIVRYASARLMIDAPALGNAKLTV EIADATQADERTVTLIANQPQLITRLLAGHHYTVNLQPAMINNRFISAPIQLTGFIPA AAQIAEVAVAYQQSALDTASFVTVDATILGLPDGVAPQRYLFSSGKYQYSLMLESGSD RQTLALRFAPGLYDVQTDDIFIDSVPWRCEQAGPLRLLQKVNHVALEFLPGVTLQVKG WPDYLAHGGVTVNAPETVSLYRDIPFSALFKYDGFDGGGDPVPAAEVDVNGDGFLDYA TLPIHKTVALVRQIEKEAGRSVMPVMVIYTANASGGSALADLQDAQKLRNHFGNFITQ CLAAQSYKDETHPVPATFVLNPDFLGALQQGPYGYTVVRQKNSVPVNAQLAAAIQALP AMAGFIAPSLPTFSDDLYGYIQAVNYLVRQFAPDVAFGWQTNVWATGTADWVLRDTAD PVAEGQAIAGFIHELGVYSGEYAPDFIAFDKFECDCFSPDALAHYGWNATCWLNYLAM VKQVTKALLTPAMLWQIPGGHMPTVEEGVSKISAAHFASGGTFFMGDARIGSDPDTLS LQLLNTALNSATYGVPTVGDFLRKDKGYDWGQMQALNLPDFNVFSILWGGGSTISITT IHSNGEDGGWLADKMVEYYAAPRYFR" gene 23335..24039 /locus_tag="STM0020" /db_xref="GeneID:1251538" CDS 23335..24039 /locus_tag="STM0020" /note="similar to E. coli orf, hypothetical protein (AAC73478.1); Blastp hit to AAC73478.1 (222 aa), 32% identity in aa 21 - 222" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459025.1" /db_xref="GeneID:1251538" /translation="MKKMMNDAFAKDNNENSLHSFLFSQQAKPHAAIDALFSALLPFG QPFTLGIGDEFYLQANDEHYIVLLESGVVSFCHDDKRLHISSSFAPSVVGMVDSYGAT YNVPARPEHFLLAETVCTGRFVRLPDFIKIADECDLWHDVARCLAYRLMVMSARDREL VGVDSYLKVRALLTEIWAYPQAYRESIIVLNFIQRRTGISRSRTMKILSELKKGGYIH IDNGRLTALGKLPVAY" misc_feature 23509..24036 /locus_tag="STM0020" /note="hydrogen peroxide resistance inhibitor IprA; Region: PRK11832" /db_xref="CDD:183332" misc_feature 23827..24030 /locus_tag="STM0020" /note="Winged helix-turn-helix DNA binding; Region: HTH_46; pfam15977" /db_xref="CDD:435049" gene 24462..25011 /gene="bcfA" /locus_tag="STM0021" /db_xref="GeneID:1251539" regulatory 24462..24467 /regulatory_class="ribosome_binding_site" /gene="bcfA" /locus_tag="STM0021" /note="putative RBS for bcfA; RegulonDB:STMS1H000416" CDS 24469..25011 /gene="bcfA" /locus_tag="STM0021" /note="fimbrial subunit (gi|4959511)" /codon_start=1 /transl_table=11 /product="fimbrial subunit" /protein_id="NP_459026.1" /db_xref="GeneID:1251539" /translation="MKKPVLALMVSAIAFGGMLSTAQADTTTVTGGTVNFVGQVVDAA CSVSADSVDQTVTLGQVRASKLTEAGMVANQKEDFTIKLEDCDTQTSQNAAVIFNGQQ DANQPGSLANTAGAGSATNVALQLYGPDGQALNIGESSSTVTLNDGENVIPLSVDYIA TGTATAGNVTATATFSMVYS" misc_feature 24469..25008 /gene="bcfA" /locus_tag="STM0021" /note="fimbrial protein BcfA; Provisional; Region: PRK15187" /db_xref="CDD:185109" gene 25105..25798 /gene="bcfB" /locus_tag="STM0022" /db_xref="GeneID:1251540" regulatory 25105..25110 /regulatory_class="ribosome_binding_site" /gene="bcfB" /locus_tag="STM0022" /note="putative RBS for bcfB; RegulonDB:STMS1H000417" CDS 25112..25798 /gene="bcfB" /locus_tag="STM0022" /note="fimbrial chaperone (gi|4959512)" /codon_start=1 /transl_table=11 /product="fimbrial chaparone" /protein_id="NP_459027.1" /db_xref="GeneID:1251540" /translation="MKKNVPIFLRLLLLLSAAGLSFAAQAGGIALGATRVIYPQGSKQ TSLPIINSSASNVFLIQSWVANADGSRSTDFIITPPLFVIQPKKENILRIMYVGPSLP TDRESVFYLNSKAIPSVDKNKLTGNSLQIATQSVIKLFIRPKNLAEAPAHAPSTLRCR NERGQLTITNPSPYYVSMVELYSAGKKLPNTMVPPKGAITLPATPGQVSLRTVNDFGA TTPARVCPAS" misc_feature 25112..25795 /gene="bcfB" /locus_tag="STM0022" /note="fimbrial chaperone protein BcfB; Provisional; Region: PRK15188" /db_xref="CDD:185110" gene 25803..28424 /gene="bcfC" /locus_tag="STM0023" /db_xref="GeneID:1251541" CDS 25803..28424 /gene="bcfC" /locus_tag="STM0023" /note="bovine colonization factor BcfC (gi|4530570)" /codon_start=1 /transl_table=11 /product="fimbrial usher" /protein_id="NP_459028.1" /db_xref="GeneID:1251541" /translation="MRNQLFMTRYYSSVTKPVLTPLALAIALAPAPGWAENYFNPAFL SDDPSAVADLSTFSRNAQAAGMYRVDVYLNNTFLATRDIAFQAVKTTGKSAPTDDSGL RACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAARTRFDFAQQRLDISIPQA AMVASARGYIPPKYWDEGINALLLNYTFTGANSQDRSPGGSAENSYFLGLNSGLNLGA WRLRDYSTWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGDSYTPSALFDSLPFR GLQLASDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQRYVPPGAFTINDLYP TAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRSDSSQKEKVKF SQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQATSTLADNNT YQGQSLRFLYAKSLAQSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSRTDSDKS RPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGSQQSYWHTDEKDSLLQVGYSDT LAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHGDEVTRHHNVYATFSTSTD KQHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYNVS DNGDYQQVNYGLSGGLVAHAHGVTLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARG YAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLARFKARVGARALVT LNHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASY HLSSSRQILSRQHAECH" misc_feature 25809..28421 /gene="bcfC" /locus_tag="STM0023" /note="outer membrane usher protein; Provisional; Region: PRK15193" /db_xref="CDD:237919" gene 28410..29432 /gene="bcfD" /locus_tag="STM0024" /db_xref="GeneID:1251542" regulatory 28410..28415 /regulatory_class="ribosome_binding_site" /gene="bcfD" /locus_tag="STM0024" /note="putative RBS for bcfD; RegulonDB:STMS1H000418" CDS 28425..29432 /gene="bcfD" /locus_tag="STM0024" /note="fimbrial subunit (gi|4959514)" /codon_start=1 /transl_table=11 /product="fimbrial subunit" /protein_id="NP_459029.1" /db_xref="GeneID:1251542" /translation="MKIPLLFALLAGSVVSQYAFADVCKNVNGVPSSINYDLTTTLTA EQNQVGKTVQLEKSQEVNVQAVCPAGASTYSQTYRSYVSPYPVVETSGNWKYLKLDPD YLEGGMRIEDSSAGDIYPPMNNVLMGYDENVKAGQPFYVRDSNLEFQLKIVKPFVGTV NISPKTMFNVYVMTAAGDPLTDVVYSILYSGTVTVPQSCEINAGQTILVNFGALYSGN FNHAGQKPEGVRAKKFSVPVKCSGLDSQVNLTMRLIATPDSHVPQAIASDNADVGVVV ETDEGNALIPNDVQSVAPFITDSAGRANITLQAYPVSTTGETPAEGAFTALASLRVDF D" misc_feature 28425..29429 /gene="bcfD" /locus_tag="STM0024" /note="fimbrial protein BcfD; Provisional; Region: PRK15189" /db_xref="CDD:185111" gene 29418..29978 /gene="bcfE" /locus_tag="STM0025" /db_xref="GeneID:1251543" regulatory 29418..29423 /regulatory_class="ribosome_binding_site" /gene="bcfE" /locus_tag="STM0025" /note="putative RBS for bcfE; RegulonDB:STMS1H000419" CDS 29433..29978 /gene="bcfE" /locus_tag="STM0025" /note="fimbrial subunit (gi|4959515)" /codon_start=1 /transl_table=11 /product="fimbrial subunit" /protein_id="NP_459030.1" /db_xref="GeneID:1251543" /translation="MNRSHCALFAMGLMLCPQINASADDLAYNLEFTGTIVAQTCDID ISSLSQSIDLGQFAVGDFPSTGTTTKFKPFNINLKNCSRGITGAKIWFTGEPDPDNPA LLAITDTGMGSGNMLASGVGVEILNDDQDTISINNADSVVYPLKAGRNTLSFYIRYKS TRPTVTSGNATAVMYFDMQYE" misc_feature 29433..29975 /gene="bcfE" /locus_tag="STM0025" /note="fimbrial protein BcfE; Provisional; Region: PRK15190" /db_xref="CDD:185112" gene 29977..30512 /gene="bcfF" /locus_tag="STM0026" /db_xref="GeneID:1251544" regulatory 29977..29982 /regulatory_class="ribosome_binding_site" /gene="bcfF" /locus_tag="STM0026" /note="putative RBS for bcfF; RegulonDB:STMS1H000420" CDS 29994..30512 /gene="bcfF" /locus_tag="STM0026" /note="fimbrial subunit (gi|4959516)" /codon_start=1 /transl_table=11 /product="fimbrial subunit" /protein_id="NP_459031.1" /db_xref="GeneID:1251544" /translation="MRNDILYGIGMLLAASGVQAHDGRVYVSGTITDNTCSLSPGSEN INVAMGAVSQRQFYRAGDGSAWQPFAIDLQNCGSTASGVTVSFSGAADSRNTDLLALT AGESDASGIGIALYDQNKTLIPLGQESDVVTLSPGQASAHLQFYARYLADGGAVTPGD ANASATFILAYE" misc_feature 29994..30509 /gene="bcfF" /locus_tag="STM0026" /note="fimbrial protein BcfF; Provisional; Region: PRK15191" /db_xref="CDD:185113" gene 30466..31209 /gene="bcfG" /locus_tag="STM0027" /db_xref="GeneID:1251545" regulatory 30466..30471 /regulatory_class="ribosome_binding_site" /gene="bcfF" /locus_tag="STM0026" /note="putative RBS for bcfG; RegulonDB:STMS1H000421" CDS 30478..31209 /gene="bcfG" /locus_tag="STM0027" /note="fimbrial chaperone (gi|4959517)" /codon_start=1 /transl_table=11 /product="fimbrial chaparone" /protein_id="NP_459032.1" /db_xref="GeneID:1251545" /translation="MPPQPSFLPMNKFFLRCAIYWCLLPISWAQAGVVIGGTRFIYHA GAPALSVPVSNRSEASWLIDTHILPGGRWPGTKNEGNIMPFVVTPPLFMLSARQENSM RVVYTGAPLPADRESLFTLSIAAIPSGKPEANRVQMAFRSALKLLYRPDGLAGNPQQA YRHLIWSLTPDGATVRNPTPYYVTLFLLRANERAQDNAGVVAPFATRQTDWCRHTVRC TVRWQSINDYGRVMPAQTVDLTRIH" misc_feature 30505..31206 /gene="bcfG" /locus_tag="STM0027" /note="pili/flagellar-assembly chaperone; Region: PRK15192" /db_xref="CDD:185114" gene 31270..32119 /gene="bcfH" /locus_tag="STM0028" /db_xref="GeneID:1251546" regulatory 31270..31275 /regulatory_class="ribosome_binding_site" /gene="bcfH" /locus_tag="STM0028" /note="putative RBS for bcfH; RegulonDB:STMS1H000422" CDS 31274..32119 /gene="bcfH" /locus_tag="STM0028" /note="unknown (gi|6650097)" /codon_start=1 /transl_table=11 /product="putative thiol-disulfide isomerase" /protein_id="NP_459033.1" /db_xref="GeneID:1251546" /translation="MYYHALKLSRLAMLTLAGVAVSASAIAADSAPTSQIGPTAEAYI VSHPDKVGEVVATYLAEHPEFLVAASETLHQRQQIAQQQAYVQLALQYRAELLSSSSP SVGPNEAKAAVVMFFDYQCSWCSKMAPVVENLIKANPDTRFIFKEFPIFSSRWPVSGL AARVGEQVWLTQGGAKYLDWHNALYATGKVEGALTEHDVYTLAQHYLTPTQLAAVKEA QSSGAVHDALLTNQALAQHMDFSGTPAFVVMPQTQDGDVKRVTVIPGSTTQDMLQMAI QKAKG" misc_feature 31586..32104 /gene="bcfH" /locus_tag="STM0028" /note="DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC...; Region: DsbA_Com1_like; cd03023" /db_xref="CDD:239321" misc_feature order(31634..31636,31643..31645) /gene="bcfH" /locus_tag="STM0028" /note="catalytic residues [active]" /db_xref="CDD:239321" gene complement(32545..33000) /locus_tag="STM0029" /db_xref="GeneID:1251547" CDS complement(32545..32994) /locus_tag="STM0029" /note="putative transcriptional regulator MarT (gi|4324612)" /codon_start=1 /transl_table=11 /product="putative transcription regulator" /protein_id="NP_459034.1" /db_xref="GeneID:1251547" /translation="MRQYTINNEFIYNESLREIISLHDKKVLKVTLMRARCLSYLFEN AYKKLITREMISHAVWGERSQFVSDANLTQLLYLLRRDLQQIGLFELFVTLPRQGIKI DERFIIDAADIPPQAIQYHTHRCNKIISIGIPTLFLLFVLFFLAPFI" misc_feature complement(32659..32991) /locus_tag="STM0029" /note="DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; Region: CadC1; COG3710" /db_xref="CDD:442924" regulatory complement(32995..33000) /regulatory_class="ribosome_binding_site" /locus_tag="STM0029" /note="putative RBS for STM0029; RegulonDB:STMS1H000423" gene 33357..34368 /locus_tag="STM0030" /db_xref="GeneID:1251548" regulatory 33357..33362 /regulatory_class="ribosome_binding_site" /locus_tag="STM0030" /note="putative RBS for STM0030; RegulonDB:STMS1H000424" CDS 33364..34368 /locus_tag="STM0030" /note="leuO homolog (gi|6650098)" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459035.1" /db_xref="GeneID:1251548" /translation="MRPIKNAKKIDYNLIKVFDTVITEGNATRAARKLDVTPAAISQA LLRLQNLYGEELFIRTRKGLVPSSKGKSLHQVFRQAIESIESTLCDKTDAQESNELIV LGGDITENYYFPALLDTVLMNRYIIKHYAIKKTGEYSPASMLTHGYADVIMGILEIKN EMIESYLIDNLSDFVCVCGEKSPLVGLEKMSLYNFYAARHAVYHSDMFSSFTADSIDL FKSSTPYAGRREIGYYSDSLFGVIDIVEKSDMVAILPGKIATYFRDVRRYNIKILRMP DEMIFRTLPVYAYLATNSTHYKNVKKLISTFQSTFLFSQEKQPDALVEGSTSLCDLSV " misc_feature 33391..>33969 /locus_tag="STM0030" /note="DNA-binding transcriptional regulator, LysR family [Transcription]; Region: LysR; COG0583" /db_xref="CDD:440348" misc_feature <33808..34230 /locus_tag="STM0030" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" gene complement(34376..34816) /locus_tag="STM0031" /db_xref="GeneID:1251549" CDS complement(34376..34816) /locus_tag="STM0031" /note="putative transcriptional regulator MarT (gi|4324612)" /codon_start=1 /transl_table=11 /product="putative transcription regulator" /protein_id="NP_459036.1" /db_xref="GeneID:1251549" /translation="MTIYLINSTHTYNDKTNELKKIKTGKMIKIAAMRIKCLEYMLNH AQQEIIYKKQLTNELWGERSQFISDANLTQILYLLRRDLKGFGLSQFFSTVPRTGIKV DANIIISNENKSCLPSSLKKEEYKYMALFFALLTMVIMVIYLIR" misc_feature complement(34481..34813) /locus_tag="STM0031" /note="DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; Region: CadC1; COG3710" /db_xref="CDD:442924" gene 35331..37057 /locus_tag="STM0032" /db_xref="GeneID:1251550" regulatory 35331..35336 /regulatory_class="ribosome_binding_site" /locus_tag="STM0032" /note="putative RBS for STM0032; RegulonDB:STMS1H000425" CDS 35339..37057 /locus_tag="STM0032" /codon_start=1 /transl_table=11 /product="putative arylsulfatase" /protein_id="NP_459037.1" /db_xref="GeneID:1251550" /translation="MNKKSSSMVNMPAPREPINQKIDTNNALVLNHNAIYEQRLAEIT QSNTCDKAIVTVNPYGTAPLSLYLGVWMDEAAALEINVVDSEATTEEVRYQYDVHPGA NLIPVCGMVSAVNNQITLRLASQIVGQYTVMTDALPPTDSANVSLGFPIISVSCPAQQ ASLMEEGLYFSTYFDRYNLAFDHNGIVRWYVSQEIPSYNFVRMDNGHFLATSQGINHC LNMYEFDIMGRVYTVYLLDNEFHHSILPIENNLAIAPSEYSNGRPDGYSTGKDGVSII NLSTGLEVAYYDMLYVMDYSRSPRPSGSAPGQDVSMDDWLHINQSYINEPNNLLICSG RHQSAIFGVNVDSGELRFIMANHEDWSDEFKQYLLTPVDDDGVPLYDLTSPGGIDAAD KNFWTWGQHNIVEIPNDEPGILEFMVFDNGNYRSREDAKSLLPLDNFSRVVQFKINLN TMTVTRPYEYGKTEVGNRGYSSFVSAKHLLTNGHLVIHFGATTVDEFEHTITAQPGSS DLVDPDEGQQALGRLVLQEINKETKEVLFEAMVTSGYFKNEETNGTNYRYDISAFRVY KMPLFA" misc_feature 35498..35734 /locus_tag="STM0032" /note="Arylsulfotransferase Ig-like domain; Region: Arylsulfotran_N; pfam17425" /db_xref="CDD:407495" misc_feature 35798..37009 /locus_tag="STM0032" /note="Arylsulfotransferase (ASST); Region: Arylsulfotrans; pfam05935" /db_xref="CDD:399139" gene complement(37103..38674) /locus_tag="STM0033" /db_xref="GeneID:1251551" CDS complement(37103..38674) /locus_tag="STM0033" /note="similar to E. coli UDP-sugar hydrolase (5'-nucleotidase) (AAC73582.1); Blastp hit to AAC73582.1 (550 aa), 26% identity in aa 1 - 253, 32% identity in aa 386 - 506" /codon_start=1 /transl_table=11 /product="putative 5'-nucleotidase" /protein_id="NP_459038.1" /db_xref="GeneID:1251551" /translation="MVYMNKKFSISLLSLCIGLSSAISFSADARDITIYYTNDLHAHV TPEIIPYVSKTRPVGGFAPISKIVKDAKAKEKDVFFFDAGDYFTGPFISTLTKGEAII DILNTMPYDAVSVGNHEFDHGHENLVKQLSKLQFPVLLDNVFYSGTDTPLIKEPYTIV EKDGFKIGVIGMHGVSAFYEAIAAGVREGVDCRDPIPYVKKQLEELKGKVDLTVLLAH EGVPGMQSSAGEADVARALKTDVDMAKSLEGYGLNVLITGHAHKGTPEPIKVGDTLVV STDAYTIELGKLVLDWNPETKKVDSYNGKLITMYADTYKPDPVTQAKIDEWDNKVKKI TDEVVAHSPEVLTRSYGESAPTGNLITDALMATVPGADASFYNAGGIRTELPKGNITY GDVLSMYPFTNDVMSMEISGKDLKSIMSHAADLKNGMLHVSKTVQFKYDSTKPLGQRI VEFDIKGKPVEDNKLYTVALDSFIGKGGGGFTFTKGKNIKYIGIQTAPALVNYMKQVN NIQPDHTMRVDDISK" misc_feature complement(37157..38593) /locus_tag="STM0033" /note="2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family [Nucleotide transport and metabolism, Defense mechanisms]; Region: UshA; COG0737" /db_xref="CDD:440500" gene complement(38773..39540) /locus_tag="STM0034" /db_xref="GeneID:1251552" CDS complement(38773..39534) /locus_tag="STM0034" /note="similar to E. coli putative sugar hydrolase (AAC75461.1); Blastp hit to AAC75461.1 (254 aa), 34% identity in aa 2 - 254" /codon_start=1 /transl_table=11 /product="putative outer membrane or exported protein" /protein_id="NP_459039.1" /db_xref="GeneID:1251552" /translation="MKNKKYINSLLAACVLFSCFNGQAAELKRVYGKLSFGYGDWNKG FVNVDRGEVWKAVADFGAVFDRGEFASFYEMNVLNHPVEGRNHVTQFLGHYRVVEGSN FTAMMKLYMSMENKFGDELNMMYGVGYLGLTSPSGFIKPYFAVHNLSNDYTSKKYGQA TGFNGYVLGWVAAYNFDMFNEKFVISNWNEVEMDRNDAYAEQQGGTTGLNGAVTFTWK FMPRWTASVSYRYFNNKLGYDGYGDRMNYLIGFEF" misc_feature complement(38776..39462) /locus_tag="STM0034" /note="Nucleoside-specific channel-forming protein, Tsx; Region: Channel_Tsx; cl04114" /db_xref="CDD:446279" regulatory complement(39535..39540) /regulatory_class="ribosome_binding_site" /locus_tag="STM0034" /note="putative RBS for STM0034; RegulonDB:STMS1H000426" gene 40120..41624 /locus_tag="STM0035" /db_xref="GeneID:1251553" regulatory 40120..40125 /regulatory_class="ribosome_binding_site" /locus_tag="STM0035" /note="putative RBS for STM0035; RegulonDB:STMS1H000427" CDS 40131..41624 /locus_tag="STM0035" /note="similar to E. coli putative sulfatase (AAC76701.1); Blastp hit to AAC76701.1 (497 aa), 26% identity in aa 2 - 420" /codon_start=1 /transl_table=11 /product="putative arylsulfatase" /protein_id="NP_459040.1" /db_xref="GeneID:1251553" /translation="MKRTVVASMIGLALCAGCVLSTAQAATAKRPNLVIILADDLGYG DLATYGHRIVKTPNIDKLAQEGVKFTDYYAPAPLCSPSRAGLLTGRMPFRTGIRSWIP EGKDVALGRNELTIANLLKQQGYDTAMMGKLHLNAGGDRTDQPQAKDMGFDYTLVNPA GFVTDATLDNAKERPRYGVVHPTGWIRNGQHIGRADKMSGEFVSSEVVNWLDNKKDDN PFFLYVAFTEVHSPLASPKKYLDMYSQYMTDYQKQHPDLFYGDWADKPWRGTGEYYAN ISYMDEQVGKVLDKIKAMGEEDNTIVIFTSDNGPVTREARKVYELNLAGETDGLRGRK DNLWEGGIRVPAIIKYGKHIPQGMVTDTPVYGLDWLPTLANMMDFKLPTDRTYDGQSL VPLLKDKTLKRQKPLIFGIDMPFQDDPTDEWAIRDGDWKMIIDRQNKPKYLYNLKTDR FETLNQIGKQPQIEKQLYGKFLKYKKDIDNDSLMKARGDKPTPVTWG" misc_feature 40131..41567 /locus_tag="STM0035" /note="Arylsulfatase A or related enzyme, AlkP superfamily [Inorganic ion transport and metabolism]; Region: AslA; COG3119" /db_xref="CDD:442353" gene 41717..42913 /locus_tag="STM0036" /db_xref="GeneID:1251554" regulatory 41717..41722 /regulatory_class="ribosome_binding_site" /locus_tag="STM0036" /note="putative RBS for STM0036; RegulonDB:STMS1H000428" CDS 41723..42913 /locus_tag="STM0036" /note="similar to E. coli putative arylsulfatase regulator (AAC76803.1); Blastp hit to AAC76803.1 (411 aa), 46% identity in aa 8 - 401" /codon_start=1 /transl_table=11 /product="putative arylsulfatase regulatory protein" /protein_id="NP_459041.1" /db_xref="GeneID:1251554" /translation="MMFGKSCQVMVKPTGSVCNLDCKYCFYLEKEKLYPDRKNHYKMS EETLELFIRQQIAAQDIDEVIFAWQGGEPTLMGIPFYRKAVEFQQRYCGGKTIVNTFQ TNGILINDDWATFFREHDFLVGVSIDGDAALHDEWRVTRSGKPTHEKVENAVRCLAQH DVEFNTLTVVNRTNMHHPVQVYRYLKSIGSRYMQFIPLVERCGENGLAQPQDKHIAMT PWSVDSLQFGQFLNAVFDIWIREDIGDIGIQLFEQTLAAWCGLPPQVCVFAPTCGSAF AMEMNGDVYNCDHFVYPQFKLGNIHQKTLRQMNQGEQNRQFGSDKQRSMAQECHRCQW KFACYGGCPKHRFLPSASGATNHNYLCAGYQAFFSHTATAMSAMRTLYEKGISPAEIK SIFV" misc_feature 41744..42865 /locus_tag="STM0036" /note="anaerobic sulfatase-maturating enzyme; Region: sulfatase_rSAM; TIGR03942" /db_xref="CDD:188457" gene 42926..44185 /locus_tag="STM0037" /db_xref="GeneID:1251555" regulatory 42926..42931 /regulatory_class="ribosome_binding_site" /locus_tag="STM0037" /note="putative RBS for STM0037; RegulonDB:STMS1H000429" CDS 42932..44185 /locus_tag="STM0037" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459042.1" /db_xref="GeneID:1251555" /translation="MNMFSHINVDACKTPGCKNLGILGSPDYLPQGKNVLCRACGFLF PIISARSLNLFRQAANQPWKGLVKSCPHCGGTSLKKYGFSTKGERRMYCRQCNKTFIS YTAIRSDARQENLATLIGEGASLVEIRAALAIDSTGFSRELQKLSRRANQAERDFVFP AFDIAMSTRAFRVKFNGGDSSLYVLVTAEEESGKVVAISTNYSAQPVEADYQYHSDYE ERLPSGTLAHLVQRKEALTMRRNVLFDVDYGPAVLYKNDPGMLVKPVLPAYRHFELVQ ALTDERSLNVQHYLDHECFILGGCMMANFSYLRQGRCHISFVRERGVTPPKRDLPPRL FLSGGIRNNVWRTFSTRDYAMAVCNLTGNKKVSLLRHATLNSATAFIRYVHNHPFLPH LNRMSPGNVVAVLDYLKFEYNASRN" misc_feature 43040..43192 /locus_tag="STM0037" /note="Zinc ribbon domain; Region: Zn-ribbon_8; cl00993" /db_xref="CDD:470024" misc_feature 43139..43795 /locus_tag="STM0037" /note="Transposase InsA [Mobilome: prophages, transposons]; Region: InsA; COG3677" /db_xref="CDD:442893" gene 44305..46027 /locus_tag="STM0038" /db_xref="GeneID:1251556" regulatory 44305..44310 /regulatory_class="ribosome_binding_site" /locus_tag="STM0038" /note="putative RBS for STM0038; RegulonDB:STMS1H000430" CDS 44312..46027 /locus_tag="STM0038" /codon_start=1 /transl_table=11 /product="putative arylsulfatase" /protein_id="NP_459043.1" /db_xref="GeneID:1251556" /translation="MNTLTTTSVVLPAPRPAINQGIDINNEMVLNHTAIYENCLAQVT QENTVENALMLLDPYGTAPLSAYAGVWSLEPAEIIVTVQDAAKTAMPVEHLYTLTAGA NLLPVLGLVADTENRIVFSQADTPLAVYTLITQPLPPVDSAEVVLGFPIINVTQPATD ANKMAPGFYFITHFDRYNYALDQNGLVRWYVTQDYPSYNFVRIDNGHFLTTSEAKNTY LDMYEFDMMGRLHTFYNLDNQFHHSIWPWDSNTIVAPSEYTSGRPDDLKTNEDGVSVV DLTTGLETAYYDMAKVLDTTRVSRPSGTAPGEDPTVKDWLHINQSYVNETNQLLIASG RHQSAVFGVDLQTQALRFILSTHEDWDDAYQPYLLTPVDSEGVALYDFSKQEDIDAAD RDFWTWGQHNVVEIANNTPGIVEFMVFDNGNYRSRDDSKSLLPPDNYSRIVHFVVNMN EMTVMRPFEYGKELGARGYSSCVSAKAIQQNGNIVVHFADCTFDENGRAISCQPGESD IIDPQAGSEAMGLLILQEIAPTEKTVLFEATMTSGYYKNAETNGEGYRYDITSFRVYK MDLYA" misc_feature 44468..44683 /locus_tag="STM0038" /note="Arylsulfotransferase Ig-like domain; Region: Arylsulfotran_N; pfam17425" /db_xref="CDD:407495" misc_feature 44771..45979 /locus_tag="STM0038" /note="Arylsulfotransferase (ASST); Region: Arylsulfotrans; pfam05935" /db_xref="CDD:399139" gene 46083..47356 /gene="nhaA" /locus_tag="STM0039" /db_xref="GeneID:1251557" regulatory 46083..46091 /regulatory_class="minus_35_signal" /gene="nhaA" /locus_tag="STM0039" /note="putative -35_signal for nhaA; RegulonDB:STMLTH004626" regulatory 46110..46118 /regulatory_class="minus_10_signal" /gene="nhaA" /locus_tag="STM0039" /note="putative -10_signal for nhaA; RegulonDB:STMLTH004626" regulatory 46179..46184 /regulatory_class="ribosome_binding_site" /gene="nhaA" /locus_tag="STM0039" /note="putative RBS for nhaA; RegulonDB:STMS1H000431" CDS 46190..47356 /gene="nhaA" /locus_tag="STM0039" /note="similar to E. coli Na+/H antiporter, pH dependent (AAC73130.1); Blastp hit to AAC73130.1 (388 aa), 92% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="NhaA family of transport protein, Na+/H antiporter, pH dependent" /protein_id="NP_459044.1" /db_xref="GeneID:1251557" /translation="MKHLHRFFSSDASGGIILIIAAALAMLMANMGATSGWYHDFLET PVQLRVGALEINKNMLLWINDALMAVFFLLIGLEVKRELMQGSLASLRQAAFPVIAAI GGMIVPALLYLAFNYSDPVTREGWAIPAATDIAFALGVLALLGSRVPLALKIFLMALA IIDDLGAIVIIALFYTSDLSIVSLGVAAFAIAVLALLNLCGVRRTGVYILVGAVLWTA VLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLFAFANAGVSL QGVTIDGLTSMLPLGIIAGLLIGKPLGISLFCWLALRFKLAHLPQGTTYQQIMAVGIL CGIGFTMSIFIASLAFGNVDPELINWAKLGILIGSLLSAVVGYSWLRARLNAPA" misc_feature 46190..47347 /gene="nhaA" /locus_tag="STM0039" /note="sodium/proton antiporter NhaA; Region: nhaA; PRK09561" /db_xref="CDD:181955" gene 47407..48317 /gene="nhaR" /locus_tag="STM0040" /db_xref="GeneID:1251558" regulatory 47407..47412 /regulatory_class="ribosome_binding_site" /gene="nhaR" /locus_tag="STM0040" /note="putative RBS for nhaR; RegulonDB:STMS1H000432" CDS 47418..48317 /gene="nhaR" /locus_tag="STM0040" /note="LysR family; similar to E. coli transcriptional activator of nhaA (AAC73131.1); Blastp hit to AAC73131.1 (301 aa), 92% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="transcriptional activator of nhaA" /protein_id="NP_459045.1" /db_xref="GeneID:1251558" /translation="MSMSHINYNHLYYFWHVYKEGSVVGAAEALFLTPQTITGQIKAL EERLQGKLFKRKGRGLEPSELGELVFRYADKMFTLSQEMLDIVNYRKESNLLFDVGVA DALSKRLVSSVLDAAVVVDEPIHLRCFESTHEMLLEQLSQHKLDMIISDCPIDSTQQE GLFSVKIGECSVSFWCTNPLPEKAFPACLEERRLLVPGRRSMLGRKLLNWFNSQGLQV EILGEFDDAALMKAFGATHDAIFVAPSLYSLDFYADESVIEIGRVENVMEEYHAIFAE RMIQHPAVQRICNADYSALFKLQ" misc_feature 47424..48308 /gene="nhaR" /locus_tag="STM0040" /note="transcriptional activator NhaR; Provisional; Region: nhaR; PRK11062" /db_xref="CDD:182938" gene complement(48372..50417) /locus_tag="STM0041" /db_xref="GeneID:1251559" CDS complement(48372..50411) /locus_tag="STM0041" /note="similar to E. coli orf, hypothetical protein (AAC76680.1); Blastp hit to AAC76680.1 (772 aa), 25% identity in aa 116 - 547, 27% identity in aa 549 - 665, 25% identity in aa 84 - 149" /codon_start=1 /transl_table=11 /product="putative glycosyl hydrolase" /protein_id="NP_459046.1" /db_xref="GeneID:1251559" /translation="MPFMQQDPRRLVWQQNDRYLWIEPWGENSLRVRSGRHLPVMRNE DWALTEPVAESQCHIDYEHHQATLTNGKIIAIVNQKGQVTFYRHPHKPLLQEFWRLRG EIGEDESSHGQYVSALNLEGREFRPIQGGKYSLKARFEATEGEKIYGMGQYQQANLDL KGCVLELAQRNSQASVPFMLSSLGYGFLWNNPAVGRVTFAQNVTEWEAQVSEQLDYWI TAGDTPAEISRAYALATGTPPMMPDYAMGFWQCKLRYRTQEELLEVAREYKRRNLPIS VIVIDFFHWPNQGDWMFDARDWPDPDAMIAELKSLGIELMVSVWPTVDNRTESYREMR ENGWLVQTERGLPINMDFLGNTTYFDATHPGARDYVWGKAKRNYYDKGVKLFWLDEAE PEFSVYDYDNYRYHAGPVLEVGNIYPRMYAKTFFDGMKADGEDQVINLLRCAWAGSQK YGALVWSGDIHSSFRSLRNQFAAGLNMGIAGIPWWTTDIGGFHGGNIHDPKFHELLIR WFQWGVFSPVMRLHGNRDPQILPAQPYRDGIAQCPTGAPNEVWSYGEEVCEVLTGCLA LREKLKPYIKALMEETHKHNTPVMRPLFFEFPEQETSWTITDQYCFGPDLLIAPVMHE GMRERDVWLPEGETWTDLATGESYSGGQTLQYATPLNRIPVFIREGGQYRSLLNL" misc_feature complement(49704..50000) /locus_tag="STM0041" /note="N-terminal domain of glycosyl hydrolase family 31 (GH31); Region: GH31_N; cd14752" /db_xref="CDD:270212" misc_feature complement(49899..49901) /locus_tag="STM0041" /note="active site" /db_xref="CDD:270212" misc_feature complement(48708..49706) /locus_tag="STM0041" /note="xylosidase XylS-like; Region: GH31_xylosidase_XylS; cd06591" /db_xref="CDD:269877" misc_feature complement(order(48846..48848,48936..48938,49035..49037, 49044..49046,49086..49088,49245..49247,49251..49253, 49452..49454,49566..49571,49653..49655)) /locus_tag="STM0041" /note="active site" /db_xref="CDD:269877" regulatory complement(50412..50417) /regulatory_class="ribosome_binding_site" /locus_tag="STM0041" /note="putative RBS for STM0041; RegulonDB:STMS1H000433" gene complement(50451..51829) /locus_tag="STM0042" /db_xref="GeneID:1251560" CDS complement(50451..51824) /locus_tag="STM0042" /note="similar to E. coli putative permease (AAC76681.1); Blastp hit to AAC76681.1 (479 aa), 29% identity in aa 22 - 457" /codon_start=1 /transl_table=11 /product="putative sodium galactoside symporter" /protein_id="NP_459047.1" /db_xref="GeneID:1251560" /translation="MSSVIEDTQPSGSASLSLLQRISYGSLDVAGNLLYCFSSTYILY FYTDVAGISLAVAGVILLLARIIDGIDAPIWGIIIDKTRSRYGKCRPWFLWLPLPFAV FSALSFWSPDISMTGKAIYAAISYMIASILFTGLNTPLSAILPLMTLSPKERLVLNSW RMTGGQIGVLLMNATALPLVAFLGNGDDHAGFIYTAITFAIISCALTLFAFKNIREMD TDKIQHEPKLPMKKSFAAMKGNWPWILMVLANLIFWIALQQRNTTIVYYLTYNLDRKD LVPLINSLATIQILFIIAIPFFSKYLAKTWIWVGGLLVATFGGVMMWLAADNITFLIA AWILGNIGSGIACSMPFAMLGFAVDFGAWKTGIKATGILIAFGSTFCIKMGSGLGTAF AAWIMNSFGYVPNHAQSAAGLEGIIWAFIWAPALLFALAAIPLLFFRKYEAMEEKIRH DLETVNS" misc_feature complement(50559..51764) /locus_tag="STM0042" /note="Salmonella enterica Na+/melibiose symporter MelB and similar transporters of the Major Facilitator Superfamily; Region: MFS_MelB_like; cd17332" /db_xref="CDD:340890" misc_feature complement(order(50667..50669,50676..50681,50688..50693, 50703..50705,50772..50774,50784..50786,50796..50801, 50946..50948,50958..50960,51039..51041,51048..51056, 51063..51068,51075..51077,51318..51320,51327..51332, 51339..51341,51402..51404,51411..51419,51423..51428, 51609..51611,51708..51710,51717..51722,51729..51734)) /locus_tag="STM0042" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340890" regulatory complement(51824..51829) /regulatory_class="ribosome_binding_site" /locus_tag="STM0042" /note="putative RBS for STM0042; RegulonDB:STMS1H000434" gene complement(52280..52550) /gene="rpsT" /locus_tag="STM0043" /db_xref="GeneID:1251561" CDS complement(52280..52543) /gene="rpsT" /locus_tag="STM0043" /note="30S ribosomal protein S20. (SW:RS20_SALTY)" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S20" /protein_id="NP_459048.1" /db_xref="GeneID:1251561" /translation="MANIKSAKKRAVQSEKARKHNASRRSMMRTFIKKVYAAIEAGDK AAALKAFNEMQPIVDRQAAKGLIHKNKAARHKANLTAQINKLA" misc_feature complement(52283..52543) /gene="rpsT" /locus_tag="STM0043" /note="Ribosomal protein S20 [Translation, ribosomal structure and biogenesis]; Region: RpsT; COG0268" /db_xref="CDD:440038" regulatory complement(52545..52550) /regulatory_class="ribosome_binding_site" /gene="rpsT" /locus_tag="STM0043" /note="putative RBS for rpsT; RegulonDB:STMS1H000435" gene 52649..52864 /gene="yaaY" /locus_tag="STM0044" /db_xref="GeneID:1251562" CDS 52649..52864 /gene="yaaY" /locus_tag="STM0044" /note="similar to E. coli orf, hypothetical protein (AAC73135.1); Blastp hit to AAC73135.1 (72 aa), 71% identity in aa 3 - 72" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459049.1" /db_xref="GeneID:1251562" /translation="MQHSLRSDGAGFYQLACCEYSLSMRKIALSGGFWGGVCRMAMKS IFFMFHQGNRRLTLTAVQGILLRFSLF" gene 52872..53810 /gene="ribF" /locus_tag="STM0045" /db_xref="GeneID:1251563" CDS 52872..53810 /gene="ribF" /locus_tag="STM0045" /EC_number="2.7.1.26" /EC_number="2.7.7.2" /note="similar to E. coli putative regulator (AAC73136.1); Blastp hit to AAC73136.1 (313 aa), 89% identity in aa 1 - 309" /codon_start=1 /transl_table=11 /product="flavokinase and FAD synthetase" /protein_id="NP_459050.1" /db_xref="GeneID:1251563" /translation="MKLIRGIHNLSQAPHGCVLTIGNFDGVHRGHRALLQGLQEEGRR RGLPVVVMIFEPQPLELFATDKAPARLTRLREKLHYLAQCGVDYVLCVKFDRRFAALT AQTFISELLVERLGVQFLAVGDDFRFGASRAGDFLLLQKAGAEYGFAVSSTQTFCEGG VRISSTAVRQALAEDNLALAESLLGHPFTISGRVVHGDELGRTIGFPTANLPLRRQVS PVKGVYAVEVTGLGDKPLPGVANIGTRPTVAGVRQQLEVHLLDVVMDLYGRHIDVILR KKIRNEQRFASLDELKAQIARDELTARKFFGLAGQV" misc_feature 52875..53795 /gene="ribF" /locus_tag="STM0045" /note="bifunctional riboflavin kinase/FAD synthetase; Region: PRK05627" /db_xref="CDD:235536" gene 53838..56689 /gene="ileS" /locus_tag="STM0046" /db_xref="GeneID:1251564" regulatory 53838..53843 /regulatory_class="ribosome_binding_site" /gene="ileS" /locus_tag="STM0046" /note="putative RBS for ileS; RegulonDB:STMS1H000436" CDS 53855..56689 /gene="ileS" /locus_tag="STM0046" /EC_number="6.1.1.5" /note="similar to E. coli isoleucine tRNA synthetase (AAC73137.1); Blastp hit to AAC73137.1 (938 aa), 87% identity in aa 1 - 938" /codon_start=1 /transl_table=11 /product="isoleucine tRNA synthetase" /protein_id="NP_459051.1" /db_xref="GeneID:1251564" /translation="MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAA KKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGFDSPYVPGWDCHGLPI ELKVEQEFGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFK TEANIIRALGRIIKNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFRAVD QDAVKAKFGLPGVSGPVSLVIWTTTPWTLPANRAISLAPDFDYALVQIDGQAVILAKD LVESVMQRIGAAEYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHT APGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVIELLKEKGA LLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDKEGLRQQSLKEIKGVQWIPDWGQA RIESMVANRPDWCISRQRTWGVPMSLFVHKETQELLPIERTLAAMEEVAKRVEVDGIQ AWWDLDPKEILGEDADQYEKVPDTLDVWFDSGSTSYSVVDARPEFAGHAADMYLEGSD QHRGWFMSSLMISVAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGA DILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFNPATDMVKPEE MVVLDRWAVGCAKTAQQEILKAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTA KADSVARRSCQTALYHIAEALVRWMAPIMSFTADEIWGYLPGEREKYVFTGEWYDGLF GLEENEEFNDAFWDDVRYIKDQVNKELENQKANGIKSNLEAKVTLKYADDANGTIKKL KLLGEEVRFIFITSQFVISEQAGGIDDENIQYNAGNTTVQAVVTRAEGDKCPRCWHYT TDVGKVAEHADICGRCVSNIAGNGEQRKFA" misc_feature 53864..56662 /gene="ileS" /locus_tag="STM0046" /note="Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: IleS; COG0060" /db_xref="CDD:439830" gene 56689..57189 /gene="lspA" /locus_tag="STM0047" /db_xref="GeneID:1251565" CDS 56689..57189 /gene="lspA" /locus_tag="STM0047" /EC_number="3.4.23.36" /note="similar to E. coli prolipoprotein signal peptidase (SPase II) (AAC73138.1); Blastp hit to AAC73138.1 (164 aa), 92% identity in aa 1 - 164" /codon_start=1 /transl_table=11 /product="prolipoprotein signal peptidase (SPase II)" /protein_id="NP_459052.1" /db_xref="GeneID:1251565" /translation="MSKPLCSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVGLFP SLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGICVILLVMMYRSKATQKLNNIAYA LIIGGALGNLFDRLWHGFVVDMIDFYVGNWHFATFNLADSAICIGAALIVLEGFLPKP TAKEQA" misc_feature 56716..57177 /gene="lspA" /locus_tag="STM0047" /note="Lipoprotein signal peptidase [Cell wall/membrane/envelope biogenesis, Intracellular trafficking, secretion, and vesicular transport]; Region: LspA; COG0597" /db_xref="CDD:440362" gene 57328..57793 /gene="slpA" /locus_tag="STM0048" /db_xref="GeneID:1251566" regulatory 57328..57333 /regulatory_class="ribosome_binding_site" /gene="slpA" /locus_tag="STM0048" /note="putative RBS for slpA; RegulonDB:STMS1H000437" CDS 57344..57793 /gene="slpA" /locus_tag="STM0048" /EC_number="5.2.1.8" /note="similar to E. coli probable FKBX-type 16KD peptidyl-prolyl cis-trans isomerase (a rotamase) (AAC73139.1); Blastp hit to AAC73139.1 (149 aa), 91% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)" /protein_id="NP_459053.1" /db_xref="GeneID:1251566" /translation="MSKSVQSNSAILVHFTLKLDDGSTAESTRNNGKPALFRLGDTSL SEGLEQQLLGLKEGEKKAFSLEPDAAFGVPSPDLIQYFSRREFMAAGEPEVGAIMLFT AMDGSEMPGVIREINGDSITVDFNHPLAGHTVHFDIEVLEIDPALEA" misc_feature 57344..57790 /gene="slpA" /locus_tag="STM0048" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK15095" /db_xref="CDD:237908" gene 57782..58746 /gene="lytB" /locus_tag="STM0049" /db_xref="GeneID:1251567" regulatory 57782..57787 /regulatory_class="ribosome_binding_site" /gene="slpA" /locus_tag="STM0048" /note="putative RBS for lytB; RegulonDB:STMS1H000438" CDS 57796..58746 /gene="lytB" /locus_tag="STM0049" /note="similar to E. coli control of stringent response; involved in penicillin tolerance (AAC73140.1); Blastp hit to AAC73140.1 (316 aa), 93% identity in aa 1 - 316" /codon_start=1 /transl_table=11 /product="regulates the activity of guanosine 3',5'-bispyrophosphate synthetase I (RelA)" /protein_id="NP_459054.1" /db_xref="GeneID:1251567" /translation="MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRY VVDSLRKRGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKV HMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPEDVWTLNVKNEGK LSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQADVVL VVGSKNSSNSNRLAELAQRMGRTAFLIDDAADIQEAWVKEAACVGVTAGASAPDILVQ NVIARLREFGGGEAVTLEGREENIVFEVPKELRVDVREVE" misc_feature 57796..58698 /gene="lytB" /locus_tag="STM0049" /note="4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed; Region: ispH; PRK01045" /db_xref="CDD:234893" misc_feature order(57829..57831,58081..58083,58384..58386) /gene="lytB" /locus_tag="STM0049" /note="Fe-S cluster binding site [ion binding]; other site" /db_xref="CDD:260116" misc_feature order(57838..57840,57913..57918,58012..58017,58165..58167, 58171..58173,58294..58299,58465..58476,58600..58602) /gene="lytB" /locus_tag="STM0049" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:260116" misc_feature order(58165..58167,58171..58173,58468..58470,58474..58476) /gene="lytB" /locus_tag="STM0049" /note="catalytic site [active]" /db_xref="CDD:260116" gene 58940..60148 /locus_tag="STM0050" /db_xref="GeneID:1251568" regulatory 58940..58945 /regulatory_class="ribosome_binding_site" /locus_tag="STM0050" /note="putative RBS for STM0050; RegulonDB:STMS1H000439" CDS 58946..60148 /locus_tag="STM0050" /codon_start=1 /transl_table=11 /product="putative nitrite reductase" /protein_id="NP_459055.1" /db_xref="GeneID:1251568" /translation="MGKIKYGLPTLLAIGFWMDATSATVLELPAWERNYTGTIAGKPV NVNITRFGNSLNGYYCYEPCNQHKAVIVLRGSLQDKEVHLEERVKALSGYWNAEISSS EIKGEWTSADKKRHFPVALIYYKPKNSPDIVLVTNTNDAGGYDPSKEIDCGNTPAISA IKLYRDGKLIQTLDTASVGTCSPFMPQWGDVNFDGYPDLSIVTELLAGPDAPVQTWLY DPAKQRYVDAPASYQEITSPEIDAEHKQIVSYWRGGCCSHGVNVYRWKGKTIELIDRG ESYFQPVISKGKMYNCYMTPSYADGRIIYPLVRKNGHLTPPLSLDGTCQSFWLTGNVR TVIQAEKPGAEPESLEIQWQENKASPGRFCPLVPFVEGDKLSPRLVTDDDVPDACISR AEYEDIKQ" gene 60151..61084 /gene="rihC" /locus_tag="STM0051" /db_xref="GeneID:1251569" regulatory 60151..60156 /regulatory_class="ribosome_binding_site" /gene="rihC" /locus_tag="STM0051" /note="putative RBS for rihC; RegulonDB:STMS1H000440" CDS 60164..61084 /gene="rihC" /locus_tag="STM0051" /note="similar to E. coli orf, hypothetical protein (AAC73141.1); Blastp hit to AAC73141.1 (304 aa), 80% identity in aa 3 - 303" /codon_start=1 /transl_table=11 /product="putative purine nucleoside hydrolase" /protein_id="NP_459056.1" /db_xref="GeneID:1251569" /translation="MTASLHIILDTDPGIDDAAAIAAALFAPQLDLQLITTVAGNVSV EKTTRNALQLLHFWNSDIPLAQGAATPLLRPLRDAAYVHGESGMEGYDFVDHQRQPLA KPAFIAIRDVLMNAPEPMTLVAIGPLTNIALLLMHYPECACNIRRLVLMGGSAGRGNF TPNAEFNIAVDPEAAALVFRSGLEIVMCGLDVTNQAMLSPDFLNKLPALNRTGKMLHS LFNHYRSGSMRTGVRMHDLCAIAWLVRPELFTLQSCFVAVETQGQYTAGTTVVDIEGR LGQPANAQVALALDVDGFRQWVAEVFAYAP" misc_feature 60173..61081 /gene="rihC" /locus_tag="STM0051" /note="ribonucleoside hydrolase RihC; Provisional; Region: PRK10768" /db_xref="CDD:182713" misc_feature order(60197..60199,60209..60214,60284..60286,60407..60409, 60536..60538,60638..60640,60656..60658,60662..60664, 60869..60871) /gene="rihC" /locus_tag="STM0051" /note="active site" /db_xref="CDD:239117" misc_feature order(60377..60379,60569..60571,60692..60694,60938..60940, 60944..60949,60956..60958) /gene="rihC" /locus_tag="STM0051" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:239117" gene complement(61106..61797) /locus_tag="STM0052" /db_xref="GeneID:1251570" CDS complement(61106..61792) /locus_tag="STM0052" /note="similar to E. coli sequence similarity to Shigella regulator (AAC73721.1); Blastp hit to AAC73721.1 (226 aa), 47% identity in aa 5 - 223" /codon_start=1 /transl_table=11 /product="putative transcription regulator sensor for citrate" /protein_id="NP_459057.1" /db_xref="GeneID:1251570" /translation="MDSITTLIVEDEPMLAEILVDTIKIFPQFSIVGIADKLESAKKQ IRLYQPQLILLDNFLPDGKGIDLIRHTISTNYTGRIIFITADNHMDTISDALRMGVFD YLIKPVHYQRLQHTLERFTRYRSSLRSSEQANQTHVDALFNIQAKEQTAEPNSGLRGI DENTFNRVRQIFADPQAVHTADTLAQILGSSKTTARRYLEQGVKNNFLEAEISYGKVG RPERLYRGKV" misc_feature complement(61115..61783) /locus_tag="STM0052" /note="two-component response regulator DpiA; Provisional; Region: dpiA; PRK10046" /db_xref="CDD:182208" regulatory complement(61792..61797) /regulatory_class="ribosome_binding_site" /locus_tag="STM0052" /note="putative RBS for STM0052; RegulonDB:STMS1H000441" gene complement(61794..63413) /locus_tag="STM0053" /db_xref="GeneID:1251571" CDS complement(61794..63413) /locus_tag="STM0053" /note="histidine kinase for citrate; similar to E. coli putative sensor-type protein (AAC73720.1); Blastp hit to AAC73720.1 (552 aa), 42% identity in aa 12 - 538" /codon_start=1 /transl_table=11 /product="putative transcription regulator" /protein_id="NP_459058.1" /db_xref="GeneID:1251571" /translation="MFIREITRWFARHSFQNRIFLLILFTSTIVMLAITWYLTDITKE RLHYQVGQRALIQAMQISAMPELVEAVEAHDLSRIKALIDPMRSFSDATYITVGNEKG QRLYHVNPDEIGKYMEGGDSDDALYNAKSYVSVRKGSLGSSLRGKSPIQDSTGKVIGI VSVGYTLEQLESWLNLQISSLLFPMALLLLVLLYCARRFSLHIKKQMLNMEPQQLSQL LIQQSVLFESVFEGLIAIDSHHRITAINQTARRLLNLSQPESELIGYAIHHVVLPEAF FYDAPQKNKKDEIVTFNQMKVIASRMAVIIDNQPQGWVISFRNKDDINTLSLQLSQVR QYADNLRAVQHEHRNLISTIAGLLFLKRYDNALALIQQQSESHQKVLDFISHNFRDHH LAGLLIGKYYRAKELGLELIFDPSSFVEHLPSSLSHNEWISIVGNLLDNAYNATLLNR EGSRQIECLINSEGNEVIIEVADQGCGIDENIRQHIFERGVTTHNNGDHGIGLWLVHS YVKQANGDIIVDNNNPFGTIFTLYIPFTREE" misc_feature complement(61797..63386) /locus_tag="STM0053" /note="sensor histidine kinase DpiB; Provisional; Region: dpiB; PRK15053" /db_xref="CDD:185013" gene complement(63548..64855) /locus_tag="STM0054" /db_xref="GeneID:1251572" CDS complement(63548..64849) /locus_tag="STM0054" /EC_number="4.1.1.112" /note="oxaloacetate decarboxylase beta chain. (SW:DCOB_SALTY)" /codon_start=1 /transl_table=11 /product="putative oxalacetate decarboxylase, subunit beta" /protein_id="NP_459059.1" /db_xref="GeneID:1251572" /translation="MESLNALLQGMGLMHLGAGQAIMLLVSLLLLWLAIAKKFEPLLL LPIGFGGLLSNIPEAGMALTALESLLAHHDAGQLAVIAAKLNCAPDVHAIKEALALAL PSVQGQMENLAVDMGYTPGVLALFYKVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTL LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLAPEL LGAIAVAAYSYMALVPLIQPPIMKALTSETERKIRMVQLRTVSKREKILFPVVLLMLV ALLLPDAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKF LQPQTLGILLLGVIAFGIGTAAGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSN KVGLESDPQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM" misc_feature complement(63551..64849) /locus_tag="STM0054" /note="oxaloacetate decarboxylase subunit beta; Provisional; Region: PRK15477" /db_xref="CDD:185374" regulatory complement(64850..64855) /regulatory_class="ribosome_binding_site" /locus_tag="STM0054" /note="putative RBS for STM0054; RegulonDB:STMS1H000442" gene complement(64862..66644) /locus_tag="STM0055" /db_xref="GeneID:1251573" CDS complement(64862..66637) /locus_tag="STM0055" /EC_number="4.1.1.112" /note="oxaloacetate decarboxylase alpha chain. (SW:DCOA_SALTY)" /codon_start=1 /transl_table=11 /product="putative oxalacetate decarboxylase, subunit alpha" /protein_id="NP_459060.1" /db_xref="GeneID:1251573" /translation="MTIAITDVVLRDAHQSLFATRLRLDDMLPIAAALDDVGYGSLEC WGGATFDACIRFLGEDPWLRLRELKKAMPKTPLQMLLRGQNLLGYRHYADDVVERFVE RAVKNGMDVFRVFDAMNDPRNMKAALQAVRSHGAHAQGTLSYTTSPAHTLQTWLDLTE QLLETGVDSIAIKDMSGILTPMAAYELVSEIKKRFEVRLHLHCHATTGMAEMALLKAI EAGVDGVDTAISSMSATYGHPATEALVATLAGTEHDTGLDILKLENIAAYFREVRKKY HAFEGQLKGYDSRILVAQVPGGMLTNLESQLKQQNAADKLDQVLAEIPRVREDLGFIP LVTPTSQIVGTQAVLNVLTGERYKTIAKETAGILKGEYGHTPVPVNAALQARVLEGGA PVTCRPADLLKPELAELEADVRRQAQEKGITLAGNAIDDVLTVALFPQIGLKFLENRN NPAAFEPLPQAEAAQPVAKAEKPAASGIYTVEVEGKAFVVKVSDGGDISQLTAAVPAA SSAPVQAAAPAGAGTPVTAPLAGNIWKVIATEGQTVAEGDVLLILEAMKMETEIRAAQ AGTVRGIAVKSGDAVSVGDTLMTLA" misc_feature complement(64865..66637) /locus_tag="STM0055" /note="oxaloacetate decarboxylase subunit alpha; Region: PRK14040" /db_xref="CDD:237592" regulatory complement(66639..66644) /regulatory_class="ribosome_binding_site" /locus_tag="STM0055" /note="putative RBS for STM0055; RegulonDB:STMS1H000443" gene complement(66654..66899) /locus_tag="STM0056" /db_xref="GeneID:1251574" CDS complement(66654..66893) /locus_tag="STM0056" /note="sodium ion pump oxaloacetate decarboxylase subunit gamma (gi|321934)" /codon_start=1 /transl_table=11 /product="putative oxalacetate decarboxylase, subunit gamma" /protein_id="NP_459061.1" /db_xref="GeneID:1251574" /translation="MNEAVLLGEGFTLMFLGMGFVLSFLFLLIFAIRGMSAVITRFFP EPVAAPAPRAVPVVDDFTRLKPVIAAAIHHHRHHV" misc_feature complement(66693..66893) /locus_tag="STM0056" /note="oxaloacetate decarboxylase subunit gamma; Provisional; Region: PRK02919" /db_xref="CDD:235086" regulatory complement(66894..66899) /regulatory_class="ribosome_binding_site" /locus_tag="STM0056" /note="putative RBS for STM0056; RegulonDB:STMS1H000444" gene complement(67052..68400) /locus_tag="STM0057" /db_xref="GeneID:1251575" CDS complement(67052..68392) /locus_tag="STM0057" /codon_start=1 /transl_table=11 /product="putative citrate-sodium symport" /protein_id="NP_459062.1" /db_xref="GeneID:1251575" /translation="MTNMTQASATEKKGASDLLRFKIFGMPLPLYAFALITLLLSHFY NAIPTDLVGGFALMFVMGAIFGEIGKRLPIFNKYIGGAPVMIFLVAAYFVYAGIFTQK EIDAISNVMDKSNFLNLFIAVLITGAILSVNRKLLLKSLLGYIPTILAGIVGASLFGI VIGLCFGIPVDRIMMLYVLPIMGGGNGAGAVPLSEIYHSVTGRSREEYYSTAIAILTI ANIFAIIFAALLDMIGKKYTWLSGEGELVRKASFKTEDDEKAGQITHRETAVGMVLST TCFLLAYVVAKKILPSIGGVSIHYFAWMVLIVAALNASGLCSPEIKAGAKRLSDFFSK QLLWVLMVGVGVCYTDLQEIIDALTFANVVIAAIIVVGAVVGAAIGGWLIGFYPIESS ITAGLCMANRGGSGDLEVLSACNRMNLISYAQISSRLGGGIVLVIASIVFSMMV" misc_feature complement(67055..68374) /locus_tag="STM0057" /note="Na+/citrate or Na+/malate symporter [Energy production and conversion]; Region: CitS; COG3493" /db_xref="CDD:442716" regulatory complement(68395..68400) /regulatory_class="ribosome_binding_site" /locus_tag="STM0057" /note="putative RBS for STM0057; RegulonDB:STMS1H000445" gene 68637..69680 /gene="citC2" /locus_tag="STM0058" /db_xref="GeneID:1251576" CDS 68637..69680 /gene="citC2" /locus_tag="STM0058" /EC_number="6.2.1.22" /note="citrate (pro-3S)-lyase ligase; similar to E. coli citrate lyase synthetase (citrate (pro-3S)-lyase ligase (AAC73719.1); Blastp hit to AAC73719.1 (381 aa), 49% identity in aa 33 - 363" /codon_start=1 /transl_table=11 /product="putative citrate lyase synthetase" /protein_id="NP_459063.1" /db_xref="GeneID:1251576" /translation="MQNRVNLIFKRIYLQKDVLRRESVAMFLEGVGLALEDDCEIAVC AYWQGEIVGCGSLAGSVLKCIAVSPVLQGEGLSLKLLTELLTLAYELNRSELFLFTKP QNRLLFSGAGFWPIAQAGELAVLMENSSERLARFCRQLALYRQPGKTIGAIVMNANPF TLGHRYLVEQAAAACDWLHLFVVKEDASFFSYTDRWALIEQGIAGIDNVTLHSGSAYM ISRATFPGYFLKEKGVVDDCHCQIDLQLFREHLAPALGITHRFVGSEPFCPLTCAYNQ RMHDILHDPKRSGPVIEVVELARVEKNGAAISASRVRKLYSERNWSAISALVPAGTLA YLQRHAARHTETI" misc_feature 68694..69665 /gene="citC2" /locus_tag="STM0058" /note="Citrate lyase synthetase CitC [Energy production and conversion]; Region: CitC; COG3053" /db_xref="CDD:442287" gene 69703..70003 /gene="citD2" /locus_tag="STM0059" /db_xref="GeneID:1251577" regulatory 69703..69708 /regulatory_class="ribosome_binding_site" /gene="citD2" /locus_tag="STM0059" /note="putative RBS for citD2; RegulonDB:STMS1H000446" CDS 69710..70003 /gene="citD2" /locus_tag="STM0059" /note="similar to E. coli citrate lyase acyl carrier protein (gamma chain) (AAC73718.1); Blastp hit to AAC73718.1 (98 aa), 48% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="putative citrate lyase acyl carrier protein, gamma chain" /protein_id="NP_459064.1" /db_xref="GeneID:1251577" /translation="MKIIKDALAGTLESSDVMIRIGPSSEPGIRLELESLVKQQFGAA IEQVVRETLAKLGVERALVSVDDKGALECILRARVQAAALRAAEQTEIQWSAL" misc_feature 69710..69985 /gene="citD2" /locus_tag="STM0059" /note="citrate lyase subunit gamma; Provisional; Region: PRK13253" /db_xref="CDD:237316" gene 69994..70869 /gene="citE2" /locus_tag="STM0060" /db_xref="GeneID:1251578" regulatory 69994..69999 /regulatory_class="ribosome_binding_site" /gene="citD2" /locus_tag="STM0059" /note="putative RBS for citE2; RegulonDB:STMS1H000447" CDS 70000..70869 /gene="citE2" /locus_tag="STM0060" /EC_number="4.1.3.6" /note="similar to E. coli citrate lyase beta chain (acyl lyase subunit) (AAC73717.1); Blastp hit to AAC73717.1 (307 aa), 63% identity in aa 17 - 306" /codon_start=1 /transl_table=11 /product="putative citrate lyase beta chain, acyl lyase subunit" /protein_id="NP_459065.1" /db_xref="GeneID:1251578" /translation="MRPRRSMLFIPGANAAMLSTSFVYGADAVMFDLEDAVALREKDT ARLLVHHALQHPFYQDVEKVVRINPLNTPFGLADLEAVVRGGADIVRLPKTDSKNDVL ELEAQVERIERECGREVGSTRLMAAIESAKGVVNAVDIATSSPRMVAIALAAFDYVMD MGTSRGDGTELFYARCAVLHAARVAGIAAYDVVWSDINNEEGFLKEVQLAKGLGFNGK SLVNPRQIELLHQAYSPTRKEVEHAYEVIAAAEEAESRGLGVVSLNGKMIDGPIIDHA RKVVALSASGIRD" misc_feature 70003..70860 /gene="citE2" /locus_tag="STM0060" /note="Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their...; Region: malate_synt; cl21481" /db_xref="CDD:451263" gene 70873..72400 /gene="citF2" /locus_tag="STM0061" /db_xref="GeneID:1251579" regulatory 70873..70878 /regulatory_class="ribosome_binding_site" /gene="citF2" /locus_tag="STM0061" /note="putative RBS for citF2; RegulonDB:STMS1H000449" CDS 70880..72400 /gene="citF2" /locus_tag="STM0061" /note="bifunctional; similar to E. coli citrate lyase alpha chain (AAC73716.1); Blastp hit to AAC73716.1 (510 aa), 72% identity in aa 30 - 509; putative citrate-ACP transferase" /codon_start=1 /transl_table=11 /product="putative citrate lyase alpha chain" /protein_id="NP_459066.1" /db_xref="GeneID:1251579" /translation="MKETVTMLNQQYVVPEGLQPYQGVTANSPWLASETEKRRRKICD SLEEAIRRSGLKNGMTISFHHAFRGGDKVVNMVMAKLAEMGFRDLTLASSSLIDAHWP LIEHIKNGVVRQIYTSGLRGKLGEEISAGLMENPVQIHSHGGRVKLIQSGELNIDVAF LGVPCCDEFGNANGFSGKSRCGSLGYAQVDAQYAKCVVLLTEEWVEFPNYPASIAQDQ VDLIVQVDEVGDPEKITAGAIRLSSNPRELLIARQAANVIEHSGYFCDGFSLQTGTGG ASLAVTRFLEDKMRRHNITASFGLGGITGTMVDLHEKGLIKALLDTQSFDGDAARSLA QNPHHIEISTNQYANPASKGAACERLNVVMLSALEIDVNFNVNVMTGSNGVLRGASGG HSDTAAGADLTIITAPLVRGRIPCVVEKVLTTVTPGASVDVLVTDHGIAVNPARQDLL DNLRAAGVALMTIEQLQQRAEQLTGKPQPIEFTDRVVAVVRYRDGSVIDVIRQVKG" misc_feature 70925..72397 /gene="citF2" /locus_tag="STM0061" /note="Citrate lyase, alpha subunit [Energy production and conversion]; Region: CitF; COG3051" /db_xref="CDD:442285" gene 72394..72951 /gene="citX2" /locus_tag="STM0062" /db_xref="GeneID:1251580" regulatory 72394..72399 /regulatory_class="ribosome_binding_site" /gene="citX2" /locus_tag="STM0062" /note="putative RBS for citX2; RegulonDB:STMS1H000450" CDS 72400..72951 /gene="citX2" /locus_tag="STM0062" /note="similar to E. coli orf, hypothetical protein (AAC73715.1); Blastp hit to AAC73715.1 (183 aa), 46% identity in aa 12 - 167" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459067.1" /db_xref="GeneID:1251580" /translation="MKGTDLLYLGQAVTLEEMLQARDKRAARQRQALNCYRLPLISLT LVAPGAVKNSAVWRRVADYAIAEILALCEQMEWVNVWEMQVNERSGPEWMAAVCAPAM ALKQHMSTLEMSHPLGRLWDIDIIDSDGKSLSRRELGHPARPCLICQQDAHLCARGKH HTLDLLLDEIARRIECYERERCD" misc_feature 72436..72930 /gene="citX2" /locus_tag="STM0062" /note="holo-ACP synthase CitX; Region: citrate_citX; TIGR03124" /db_xref="CDD:163145" gene 72923..73837 /gene="citG2" /locus_tag="STM0063" /db_xref="GeneID:1251581" regulatory 72923..72928 /regulatory_class="ribosome_binding_site" /gene="citX2" /locus_tag="STM0062" /note="putative RBS for citG2; RegulonDB:STMS1H000451" CDS 72929..73837 /gene="citG2" /locus_tag="STM0063" /note="similar to E. coli orf, hypothetical protein (AAC73714.1); Blastp hit to AAC73714.1 (292 aa), 47% identity in aa 1 - 290" /codon_start=1 /transl_table=11 /product="putative modifier of citrate lyase protein" /protein_id="NP_459068.1" /db_xref="GeneID:1251581" /translation="MNVSVVTERRTPAYSSLAAGELNGLVARALLTEARLTPKPGLVD IRNSGAHRDMDLAAFERSTTAIAPWMEKFFIMGNNTAALAAENVLVMLRPLGMACEND MLQATNGVNTHRGAIFAFGLLSAAIGRLLARGEPLEQNRICDQVARLSRNIVAHELSA KKAGKLTKSETHFQCYGLSGARGEAESGFRTVRTQALPVFNRVVQEHDDTHLALLQTL LHLMAWNDDTNLVSRGGLEGLYYVQQQAQKLLWQGGVLVEGGIEAMQSLDDELILRNL SPGGSADLLAVTWFLSHFPAGSLYPE" misc_feature 72989..73810 /gene="citG2" /locus_tag="STM0063" /note="triphosphoribosyl-dephospho-CoA synthase CitG; Region: citrate_citG; TIGR03125" /db_xref="CDD:132169" gene 74007..74838 /gene="dapB" /locus_tag="STM0064" /db_xref="GeneID:1251582" regulatory 74007..74012 /regulatory_class="ribosome_binding_site" /gene="dapB" /locus_tag="STM0064" /note="putative RBS for dapB; RegulonDB:STMS1H000452" CDS 74017..74838 /gene="dapB" /locus_tag="STM0064" /EC_number="1.17.1.8" /note="similar to E. coli dihydrodipicolinate reductase (AAC73142.1); Blastp hit to AAC73142.1 (273 aa), 90% identity in aa 1 - 273" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate reductase" /protein_id="NP_459069.1" /db_xref="GeneID:1251582" /translation="MHEAQIRVAIAGAGGRMGRQLIQAAMAMEGVQLGAALEREGSSL LGSDAGELAGAGKSGVIVQSSLEAVKDDFDVFIDFTRPEGTLTHLAFCRQHGKGMVIG TTGFDDAGKQAIREASQEIAIVFAANFSVGVNVMLKLLEKAAKVMGDYSDIEIIEAHH RHKVDAPSGTALAMGEAIAGALDKNLKDCAVYSREGYTGERVAGTIGFATVRAGDIVG EHTAMFADIGERVEITHKASSRMTFANGALRSALWLKTKKNGLFDMRDVLGLDVL" misc_feature 74032..74820 /gene="dapB" /locus_tag="STM0064" /note="4-hydroxy-tetrahydrodipicolinate reductase [Amino acid transport and metabolism]; Region: DapB; COG0289" /db_xref="CDD:440058" gene 75088..75435 /locus_tag="STM0065" /db_xref="GeneID:1251583" CDS 75088..75435 /locus_tag="STM0065" /codon_start=1 /transl_table=11 /product="putative viral protein" /protein_id="NP_446529.1" /db_xref="GeneID:1251583" /translation="MRLIGPSDASVRVITFNGKKLLPELTLVIFSRSALPYAKGTSTR LIRLISIGGGVLFLGGAFYLFCFNRLAFLCCSEAGCGPIVCACLKEKEAGSLYRDCNS YYIVLICCFLLIL" protein_bind 75470..75484 /note="putative binding site for IHF, RegulonDB: STMS1H000223" /bound_moiety="IHF" gene 75812..77028 /gene="carA" /locus_tag="STM0066" /db_xref="GeneID:1251584" regulatory 75812..75820 /regulatory_class="minus_35_signal" /gene="carA" /locus_tag="STM0066" /note="putative -35_signal for carA; RegulonDB:STMLTH004690" protein_bind 75820..75832 /gene="carA" /locus_tag="STM0066" /note="putative binding site for ArgR, RegulonDB: STMS1H000031" /bound_moiety="ArgR" regulatory 75836..75844 /regulatory_class="minus_10_signal" /gene="carA" /locus_tag="STM0066" /note="putative -10_signal for carA; RegulonDB:STMLTH004690" protein_bind 75852..75870 /gene="carA" /locus_tag="STM0066" /note="putative binding site for ArgR, RegulonDB: STMS1H000028" /bound_moiety="ArgR" regulatory 75868..75873 /regulatory_class="ribosome_binding_site" /gene="carA" /locus_tag="STM0066" /note="putative RBS for carA; RegulonDB:STMS1H000453" CDS 75880..77028 /gene="carA" /locus_tag="STM0066" /EC_number="6.3.5.5" /note="carbamoyl-phosphate synthase small chain. (SW:CARA_SALTY)" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthetase, glutamine-hydrolysing small subunit" /protein_id="NP_459071.1" /db_xref="GeneID:1251584" /translation="MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILT DPSYSRQIVTLTYPHIGNVGTNKADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYL KRHNIVAIADIDTRKLTRLLREKGAQNGCIIAGDSPDAKLALEKAKAFPGLNGMDLAK EVTTAETYRWTQGSWTLKDGLPEAKSEDDLPFHVVAYDFGAKRNILRMLVDRGCRLTV VPAQTSAEEVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPLFGICLGHQLLA LASGAKTVKMKFGHHGGNHPVKDMDRNVVMITAQNHGFAVDEDSLPANLRVTHKSLFD GTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRQSAK" misc_feature 75880..77004 /gene="carA" /locus_tag="STM0066" /note="Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism, Nucleotide transport and metabolism]; Region: CarA; COG0505" /db_xref="CDD:440271" gene 77030..80274 /gene="carB" /locus_tag="STM0067" /db_xref="GeneID:1251585" regulatory 77030..77035 /regulatory_class="ribosome_binding_site" /gene="carB" /locus_tag="STM0067" /note="putative RBS for carB; RegulonDB:STMS1H000454" CDS 77047..80274 /gene="carB" /locus_tag="STM0067" /EC_number="6.3.5.5" /note="carbamoyl-phosphate synthase large chain. (SW:CARB_SALTY)" /codon_start=1 /transl_table=11 /product="carbamoyl-phosphate synthase, large subunit" /protein_id="NP_459072.1" /db_xref="GeneID:1251585" /translation="MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRV ILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALEL ERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGIAHTMEEALAVAA DVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM EVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIG VETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDE LMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQ ESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVD GVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNADFLRQLKRKGFADARLAKLAGV REAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEDECEANPSIDRDKIMVLG GGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLE DVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAV DRLKLKQPANATVTAIEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQT AVSVSNDAPVLLDRFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPA YTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKDNEVYLIEVNPRAARTVPFVSKA TGVPLAKVAARVMAGKSLTEQGVTQEIIPPYYSVKEVVLPFNKFPGVDPLLGPEMRST GEVMGVGRTFAEAFAKAQLGSNSTMKKQGRALLSVREGDKERVVDLAAKLLKQGFELD ATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTAGRRAIEDSRVIR RSALQYKVHYDTTLNGGFATTMALNADATEKVTSVQEMHAQIKKS" misc_feature 77047..80253 /gene="carB" /locus_tag="STM0067" /note="carbamoyl-phosphate synthase large subunit; Region: carB; PRK05294" /db_xref="CDD:235393" protein_bind 80396..80420 /note="putative binding site for FNR, RegulonDB: STMS1H000154" /bound_moiety="FNR" protein_bind 80416..80436 /note="putative binding site for CRP, RegulonDB: STMS1H000050" /bound_moiety="CRP" gene 80459..80943 /gene="caiF" /locus_tag="STM0068" /db_xref="GeneID:1251586" regulatory 80459..80467 /regulatory_class="minus_35_signal" /gene="caiF" /locus_tag="STM0068" /note="putative -35_signal for caiF; RegulonDB:STMLTH004691" regulatory 80486..80494 /regulatory_class="minus_10_signal" /gene="caiF" /locus_tag="STM0068" /note="putative -10_signal for caiF; RegulonDB:STMLTH004691" regulatory 80537..80542 /regulatory_class="ribosome_binding_site" /gene="caiF" /locus_tag="STM0068" /note="putative RBS for caiF; RegulonDB:STMS1H000455" CDS 80548..80943 /gene="caiF" /locus_tag="STM0068" /note="similar to E. coli transcriptional regulator of cai operon (AAC73145.1); Blastp hit to AAC73145.1 (166 aa), 76% identity in aa 36 - 166" /codon_start=1 /transl_table=11 /product="transcriptional regulator of cai and fix operon" /protein_id="NP_459073.1" /db_xref="GeneID:1251586" /translation="MCEKYVERPLYLLIADWMMAENRWITAREISRQFDIEHCKAINT LSYILSEVGEIVCEVKMIPNQIAGRGCQCQRLVKVVSIDSQLYRRLNHNLQERKVSVA KAPRLSAVPPTELNREQKWQMMLSKSMRR" misc_feature 80602..80940 /gene="caiF" /locus_tag="STM0068" /note="carnitine metabolism transcriptional regulator CaiF; Region: PRK11476" /db_xref="CDD:183154" gene complement(81020..81627) /gene="caiE" /locus_tag="STM0069" /db_xref="GeneID:1251587" CDS complement(81020..81616) /gene="caiE" /locus_tag="STM0069" /note="similar to E. coli possible synthesis of cofactor for carnitine racemase and dehydratase (AAC73146.1); Blastp hit to AAC73146.1 (203 aa), 84% identity in aa 8 - 202" /codon_start=1 /transl_table=11 /product="stimulates carnitine racemase activity of CaiD and CaiB activity" /protein_id="NP_459074.1" /db_xref="GeneID:1251587" /translation="MSYYAFEGLIPVVHPDAFVHPSAVLIGDVIVGAGVYIGPLASLR GDYGRLILEAGSNLQDGCIMHGYCDTDTIVHENGHIGHGAILHGCVVGRDALVGMNSV IMDGAVIGEESIVAAMSFVKAGFQGEARQLLVGSPARVLRQVTDQELHWKHLNTKEYQ DLAIRCRTGLSETKPLTQAEENRPRLKGTTDVKPKSAQ" misc_feature complement(81029..81616) /gene="caiE" /locus_tag="STM0069" /note="carnitine operon protein CaiE; Provisional; Region: PRK13627" /db_xref="CDD:184189" regulatory complement(81622..81627) /regulatory_class="ribosome_binding_site" /gene="caiE" /locus_tag="STM0069" /note="putative RBS for caiE; RegulonDB:STMS1H000456" gene complement(81725..82523) /gene="caiD" /locus_tag="STM0070" /db_xref="GeneID:1251588" CDS complement(81725..82510) /gene="caiD" /locus_tag="STM0070" /EC_number="5.-.-.-" /note="similar to E. coli carnitine racemase (AAC73147.1); Blastp hit to AAC73147.1 (297 aa), 93% identity in aa 37 - 297" /codon_start=1 /transl_table=11 /product="carnitine racemase" /protein_id="NP_459075.1" /db_xref="GeneID:1251588" /translation="MSESLHLTRNGPILEITLDRPKANAIDAKTSFAMGEAFLNFRDD PELRVAIITGGGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFDLDKPVIAAVN GYAFGGGFELALAADFIVCAENASFALPEAKLGIVPDSGGVLRLPKLLPPAIVNEMVM TGRRMSAEEALRWGVVNRVVSQSELMESARELAQQLVNSAPLAIAALKEIYRATSEMP VEEGYRYIRSGVLKHYPSVLHSEDALEGPQAFAEKRDPVWKGR" misc_feature complement(81728..82510) /gene="caiD" /locus_tag="STM0070" /note="crotonobetainyl-CoA hydratase; Region: PRK03580" /db_xref="CDD:179599" misc_feature complement(order(82109..82111,82118..82123,82187..82195, 82199..82201,82313..82327,82337..82339,82436..82438, 82442..82444)) /gene="caiD" /locus_tag="STM0070" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(82187..82189,82319..82321)) /gene="caiD" /locus_tag="STM0070" /note="oxyanion hole (OAH) forming residues [active]" /db_xref="CDD:119339" misc_feature complement(order(81923..81928,81935..81937,81980..81982, 81989..81991,82022..82024,82031..82036,82040..82045, 82049..82054,82067..82072,82076..82084,82088..82090, 82106..82117,82151..82162,82223..82225,82247..82249)) /gene="caiD" /locus_tag="STM0070" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" regulatory complement(82518..82523) /regulatory_class="ribosome_binding_site" /gene="caiD" /locus_tag="STM0070" /note="putative RBS for caiD; RegulonDB:STMS1H000457" gene complement(82564..84131) /gene="caiC" /locus_tag="STM0071" /db_xref="GeneID:1251589" CDS complement(82564..84117) /gene="caiC" /locus_tag="STM0071" /EC_number="6.3.2.-" /note="similar to E. coli probable crotonobetaine/carnitine-CoA ligase (AAC73148.1); Blastp hit to AAC73148.1 (522 aa), 84% identity in aa 6 - 522" /codon_start=1 /transl_table=11 /product="crotonobetaine/carnitine-CoA ligase" /protein_id="NP_459076.1" /db_xref="GeneID:1251589" /translation="MDIVGGQNLRQMWDDLAGVYGDKTALIFESCEGIVRQFSYASLN EEINRTANLFYSLGIRKGDRVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLGEESA WILQNSQVSLLVTSAQFYPMYREIRQDNSTPLNHICLIGEQLPADDGVSHFTQLQARQ SATLCYTPVLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQIALRDDDVYM TVMPAFHIDCQCTAAMPAFSAGSTFVLLEKYSARAFWDQVRKYQATVTECIPMMIRTL MVQPAAPTDRQHHLREVMFYLNLSEQEKDDFTERFGVRLLTSYGMTETIVGIIGDRPG DKRRWPSIGRVGFSYEAEIRDDQNRPLPAGEIGEICIKGIPGKTIFKEYYMQPEATAK ALEPEGWLHTGDSGYQDEDGYFYFVDRRCNMIKRGGENVSCVELENIISAHPKIQDIV VVGIKDAIRDEAIKAFIVLNEGETLSEAEFFSFCENNMAKFKVPSFMEIRTDLPRNCS GKIIKKNLK" misc_feature complement(82567..84117) /gene="caiC" /locus_tag="STM0071" /note="putative crotonobetaine/carnitine-CoA ligase; Validated; Region: caiC; PRK08008" /db_xref="CDD:181195" regulatory complement(84126..84131) /regulatory_class="ribosome_binding_site" /gene="caiC" /locus_tag="STM0071" /note="putative RBS for caiC; RegulonDB:STMS1H000458" gene complement(84180..85410) /gene="caiB" /locus_tag="STM0072" /db_xref="GeneID:1251590" CDS complement(84180..85397) /gene="caiB" /locus_tag="STM0072" /note="similar to E. coli l-carnitine dehydratase (AAC73149.1); Blastp hit to AAC73149.1 (405 aa), 95% identity in aa 1 - 405" /codon_start=1 /transl_table=11 /product="l-carnitine dehydratase" /protein_id="NP_459077.1" /db_xref="GeneID:1251590" /translation="MNHLPMPTFGPLAGVRVVFSGIEIAGPFAGQMFAEWGAEVIWIE NVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFA RRGITDEVLWEHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQP MPAFPYTADYFSGMTATTAALAALHKVRETGKGESIDIAMYEVMLRMGQYFMMDYFNG GEICPRMTKGKDPYYAGCGLYKCADGYIVMELVGITQINECFKDIGLAHILGTPEVPE GTQLIHRVECPYGPLVEEKLDAWLATHTIADVQARFAELNIACAKVLTIPELEGNPQY VARESITQWQTMDGRTCKGPNIMPKFKNNPGKIWRGMPSHGMDTAAILKNIGYSEADI KELVGKGLAKVED" misc_feature complement(84183..85397) /gene="caiB" /locus_tag="STM0072" /note="L-carnitine CoA-transferase; Region: PRK03525" /db_xref="CDD:179589" regulatory complement(85405..85410) /regulatory_class="ribosome_binding_site" /gene="caiB" /locus_tag="STM0072" /note="putative RBS for caiB; RegulonDB:STMS1H000459" gene complement(85509..86662) /gene="caiA" /locus_tag="STM0073" /db_xref="GeneID:1251591" CDS complement(85509..86651) /gene="caiA" /locus_tag="STM0073" /EC_number="1.3.99.-" /note="similar to E. coli probable carnitine operon oxidoreductase (AAC73150.1); Blastp hit to AAC73150.1 (380 aa), 97% identity in aa 1 - 380" /codon_start=1 /transl_table=11 /product="putative acyl-CoA dehydrogenase, carnitine metabolism" /protein_id="NP_459078.1" /db_xref="GeneID:1251591" /translation="MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVK ALADMGIDSLLIPEEHGGLEAGFVTVAAVWMELGRLGAPTYVLYQLPGGFNTFLREGT QEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRKNGKVYLNGSKCFITSSA YTPYIVVMARDGASPDKPVYTEWFVDMSKAGIKVNKLEKLGLRMDSCCEITFDDVELD EKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRF QLIQEKFAHMAIKLNSMKNMLLEAAWKADNGTITSGDAAMCKYFCANAAFEVVDTAMQ VLGGVGIAGNHRITRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR" misc_feature complement(85512..86651) /gene="caiA" /locus_tag="STM0073" /note="crotonobetainyl-CoA dehydrogenase; Validated; Region: PRK03354" /db_xref="CDD:179566" regulatory complement(86657..86662) /regulatory_class="ribosome_binding_site" /gene="caiA" /locus_tag="STM0073" /note="putative RBS for caiA; RegulonDB:STMS1H000460" gene complement(86686..88216) /gene="caiT" /locus_tag="STM0074" /db_xref="GeneID:1251592" CDS complement(86686..88203) /gene="caiT" /locus_tag="STM0074" /note="similar to E. coli probable carnitine transporter (AAC73151.1); Blastp hit to AAC73151.1 (504 aa), 96% identity in aa 1 - 504" /codon_start=1 /transl_table=11 /product="putative BCCT family betaine/carnitine/choline transport protein" /protein_id="NP_459079.1" /db_xref="GeneID:1251592" /translation="MKNEKKKSGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVF SYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGDEKPEFSTASWIFMMFASCTSA AVLFWGSIEIYYYISTPPFGLEPNSTGAKEIGLAYSLFHWGPLPWATYSFLSVAFAYF FFVRKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTEC MQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIV SGASFIMNYFTDSVGMLLMHLPRMLFYTDAIGKGGFPQGWTVFYWAWWVIYAIQMSIF LARISRGRTVRELCFGMVMGLTASTWILWTVLGSNTLLLMDKNILNIPQLIEQHGVAR AIIETWAALPLSTATMWGFFILCFIATVTLINACSYTLAMSTCREVRDGEEPPLLVRI GWSVLVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKVHWKDK" misc_feature complement(86692..88203) /gene="caiT" /locus_tag="STM0074" /note="L-carnitine/gamma-butyrobetaine antiport BCCT transporter; Region: PRK03356" /db_xref="CDD:179568" regulatory complement(88211..88216) /regulatory_class="ribosome_binding_site" /gene="caiT" /locus_tag="STM0074" /note="putative RBS for caiT; RegulonDB:STMS1H000461" protein_bind complement(88340..88366) /note="putative binding site for CRP, RegulonDB: STMS1H000069" /bound_moiety="CRP" protein_bind 88461..88489 /note="putative binding site for CRP, RegulonDB: STMS1H000092" /bound_moiety="CRP" protein_bind 88532..88552 /note="putative binding site for CRP, RegulonDB: STMS1H000084" /bound_moiety="CRP" gene 88547..89454 /gene="fixA" /locus_tag="STM0075" /db_xref="GeneID:1251593" regulatory 88547..88555 /regulatory_class="minus_35_signal" /gene="fixA" /locus_tag="STM0075" /note="putative -35_signal for fixA; RegulonDB:STMLTH004700" regulatory 88574..88582 /regulatory_class="minus_10_signal" /gene="fixA" /locus_tag="STM0075" /note="putative -10_signal for fixA; RegulonDB:STMLTH004700" regulatory 88673..88678 /regulatory_class="ribosome_binding_site" /gene="fixA" /locus_tag="STM0075" /note="putative RBS for fixA; RegulonDB:STMS1H000462" CDS 88684..89454 /gene="fixA" /locus_tag="STM0075" /note="similar to E. coli probable flavoprotein subunit, carnitine metabolism (AAC73152.1); Blastp hit to AAC73152.1 (268 aa), 87% identity in aa 13 - 268" /codon_start=1 /transl_table=11 /product="putative flavoprotein reductase, carnitine metabolism" /protein_id="NP_459080.1" /db_xref="GeneID:1251593" /translation="MKIITCYKCVPDEQDIAINNADGTLDFSKADSKISQYDLNAIEA ACQLKQQLGDAQVVAMSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQHTAT ALAAAAQKSGFDLLICGDGSSDLYAQQVGLLVGEALNIPAINGVSKILSLTDSTLTVE RELEDEVETLSIPLPAVIAVSTDINTPQIPSMKAILGAAKKPVQVWSPADIGLNSVPA YSAQQVAAPKQRERQRVVIEGDGEEQIAAFVENLRKII" misc_feature 88684..89451 /gene="fixA" /locus_tag="STM0075" /note="putative electron transfer flavoprotein FixA; Reviewed; Region: PRK03359" /db_xref="CDD:179569" gene 89459..90411 /gene="fixB" /locus_tag="STM0076" /db_xref="GeneID:1251594" regulatory 89459..89464 /regulatory_class="ribosome_binding_site" /gene="fixB" /locus_tag="STM0076" /note="putative RBS for fixB; RegulonDB:STMS1H000463" CDS 89470..90411 /gene="fixB" /locus_tag="STM0076" /note="similar to E. coli probable flavoprotein subunit, carnitine metabolism (AAC73153.1); Blastp hit to AAC73153.1 (313 aa), 84% identity in aa 1 - 313" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein, carnitine metabolism" /protein_id="NP_459081.1" /db_xref="GeneID:1251594" /translation="MNKFSSVWVFSDTPSRLPELMSGAQAVGEKVNAFVLNEADSATA CHLGADHVWLLSGKPEDRMIEDYAAAMAETIRQHSEGGAVLLPNTRRGKLLAAKLGYR LSAAVSNDASDVSLQDGKAAVKHMVYGGLAIGAETIASPFAVITLSSGTFDAQQPDAS RSGEMHTVQWQAPATAVTRTATQARQSNSVDLDKARLVVSVGRGIGSKENISLAEALC QTIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANGAQT IFAINKDKNAPIFQYADFGIVGDALKILPALTAALAR" misc_feature 89470..90408 /gene="fixB" /locus_tag="STM0076" /note="electron transfer flavoprotein subunit alpha/FixB family protein; Region: fixB; PRK03363" /db_xref="CDD:235120" gene 90450..91747 /gene="fixC" /locus_tag="STM0077" /db_xref="GeneID:1251595" regulatory 90450..90455 /regulatory_class="ribosome_binding_site" /gene="fixC" /locus_tag="STM0077" /note="putative RBS for fixC; RegulonDB:STMS1H000464" CDS 90461..91747 /gene="fixC" /locus_tag="STM0077" /note="similar to E. coli flavoprotein; electron transport (AAC73154.1); Blastp hit to AAC73154.1 (428 aa), 88% identity in aa 1 - 428" /codon_start=1 /transl_table=11 /product="related to carnitine metabolism protein" /protein_id="NP_459082.1" /db_xref="GeneID:1251595" /translation="MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKN VTGGRLYAHSLERIIPGFADQAPIERMITHEKLAFMTDNGAMTIDYCNGEDASASQVS YSVLRSKFDAWLMEQAEEAGAQLITGIRVDNVVQRDGKVVGVEADGDILEAKVVILAD GVNSLLAEKLGMTKRVEASHVAVGVKELIELPKLVIEDRFQLQGNEGAACLFAGAPTD GLMGGGFLYTNETTLSLGLVCGLHHLKDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEY AAHVVPEAGMNMQPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAISAGEAAAKTVLSA MKRDDFSKQSLGEYRQHLDEGPMRDMRMYQKLPAFLDNPRMFTAYPEMAVNIARDLFT VDGSAPVPMRKKILRHAKKVGFINLMKDGLKGVTVL" misc_feature 90461..91744 /gene="fixC" /locus_tag="STM0077" /note="putative oxidoreductase FixC; Provisional; Region: PRK10157" /db_xref="CDD:182273" gene 91728..92031 /gene="fixX" /locus_tag="STM0078" /db_xref="GeneID:1251596" regulatory 91728..91733 /regulatory_class="ribosome_binding_site" /gene="fixX" /locus_tag="STM0078" /note="putative RBS for fixX; RegulonDB:STMS1H000465" CDS 91744..92031 /gene="fixX" /locus_tag="STM0078" /note="carnitine metabolism; similar to E. coli putative ferredoxin (AAC73155.1); Blastp hit to AAC73155.1 (95 aa), 88% identity in aa 1 - 95" /codon_start=1 /transl_table=11 /product="putative ferredoxin" /protein_id="NP_459083.1" /db_xref="GeneID:1251596" /translation="MTSPVNVDVKLGVNKFNVDEDSPHIILKTDPDKQALEVLIKACP AGLYKKQDDGSVRFDYAGCLECGTCRILGLDTALEKWEYPRGTFGVEFRYG" misc_feature 91744..92028 /gene="fixX" /locus_tag="STM0078" /note="ferredoxin-like protein FixX; Provisional; Region: PRK15449" /db_xref="CDD:185346" gene 92166..93518 /gene="yaaU" /locus_tag="STM0079" /db_xref="GeneID:1251597" regulatory 92166..92171 /regulatory_class="ribosome_binding_site" /gene="yaaU" /locus_tag="STM0079" /note="putative RBS for yaaU; RegulonDB:STMS1H000466" CDS 92178..93518 /gene="yaaU" /locus_tag="STM0079" /note="similar to E. coli putative transport protein (AAC73156.1); Blastp hit to AAC73156.1 (443 aa), 86% identity in aa 1 - 439" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_459084.1" /db_xref="GeneID:1251597" /translation="MQQPRNFDDLKFSSIHRRIMLWGSGGPFLDGYVLVIIGVALEQL TPLLHLDAEWIGALGAATLAGLFIGTSLFGYICDKVGRRKMFLLDIIAIGVISVATMF VSTPLELLVMRVLIGIVIGADYPIATSMITEFSNTRQRAFSIGFIAAMWYVGATCANL VGYWLYDMEGGWRWMLGSAFIPCLIILIGRFDLPESPRWLLRKGRVKECEQMMIKLFG EPVCFDDELPQETRFLQLFNRRHFPFVLFVAAIWTCQVIPMFAIYTFGPQIVGLLGWE QGRNAALGNVVISLFFMLGCIPAMFWLNSIGRRPLLIGSFAMMTIALALLGLVSNLGI ILVVVAFAVYAFFSGGPGILQWLYPNELFPTDIRASAVGVIMSLSRIGTIVSTWALPI FITRYGINNVMLIGALISLVGLGVSVMFAPETRGLTLTQTGNMTLRGTPSDNPR" misc_feature 92235..93431 /gene="yaaU" /locus_tag="STM0079" /note="Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily; Region: MFS_SV2_like; cd17316" /db_xref="CDD:340874" misc_feature order(92265..92270,92277..92282,92289..92291,92385..92387, 92535..92540,92544..92552,92559..92561,92619..92621, 92628..92633,92640..92642,92931..92933,92940..92945, 92952..92960,92967..92969,93051..93053,93063..93065, 93216..93221,93231..93233,93243..93245,93291..93293, 93300..93305,93312..93317,93324..93326) /gene="yaaU" /locus_tag="STM0079" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340874" gene 93601..93837 /locus_tag="STM0080" /db_xref="GeneID:1251598" regulatory 93601..93606 /regulatory_class="ribosome_binding_site" /locus_tag="STM0080" /note="putative RBS for STM0080; RegulonDB:STMS1H000467" CDS 93607..93837 /locus_tag="STM0080" /note="similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 51% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_459085.1" /db_xref="GeneID:1251598" /translation="MQKRLMTALFTAATLFTVAGCSSNQAVETTDGKTIVTDGKPEVD NDTGMVSYKNAATGKTEQINRDQLKNMSELDN" misc_feature 93613..93828 /locus_tag="STM0080" /note="Bacterial protein of unknown function (DUF903); Region: DUF903; cl05512" /db_xref="CDD:471259" gene 94123..94547 /locus_tag="STM0081" /db_xref="GeneID:1251599" regulatory 94123..94128 /regulatory_class="ribosome_binding_site" /locus_tag="STM0081" /note="putative RBS for STM0081; RegulonDB:STMS1H000468" CDS 94131..94547 /locus_tag="STM0081" /codon_start=1 /transl_table=11 /product="putative secreted protein" /protein_id="NP_459086.1" /db_xref="GeneID:1251599" /translation="MKPIPFYLLALFSAASGATEINVCKDLIGTWKTTADNPPYTMTI SPPVESCGEKCVKLNVQYELDVTHRNALYCHEGQEGVKGQGPMVIAFEGAYGGHAIGT YNRQLQLLWAGVISKNKKGKWITKMENYWFRQVKAH" gene complement(94771..95069) /locus_tag="STM0082" /db_xref="GeneID:1251600" CDS complement(94771..95061) /locus_tag="STM0082" /note="similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 36% identity in aa 18 - 103" /codon_start=1 /transl_table=11 /product="putative secreted protein" /protein_id="NP_459087.1" /db_xref="GeneID:1251600" /translation="MKKRIIAAALLATVASFSTLAAEQVSKQEISHFKLVKVGTINVS QSGGQISSPSDLREKLSELADAKGGKYYHIIAAREHGPNFEAVAEVYNDATK" misc_feature complement(94789..94959) /locus_tag="STM0082" /note="YdgH/BhsA/McbA-like domain; Region: YdgH_BhsA-like; pfam07338" /db_xref="CDD:429417" regulatory complement(95064..95069) /regulatory_class="ribosome_binding_site" /locus_tag="STM0082" /note="putative RBS for STM0082; RegulonDB:STMS1H000469" gene 95271..95465 /locus_tag="STM0083" /db_xref="GeneID:1251601" CDS 95271..95465 /locus_tag="STM0083" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_446547.1" /db_xref="GeneID:1251601" /translation="MLPGTHSLAAFKQLELFWVITSVDYLKIALFGVTVFYLVIVTSL CCCQCKIMHCQLKRNLTPCK" gene 95952..97848 /locus_tag="STM0084" /db_xref="GeneID:1251602" regulatory 95952..95957 /regulatory_class="ribosome_binding_site" /locus_tag="STM0084" /note="putative RBS for STM0084; RegulonDB:STMS1H000470" CDS 95959..97848 /locus_tag="STM0084" /note="similar to E. coli putative sulfatase (AAC76701.1); Blastp hit to AAC76701.1 (497 aa), 31% identity in aa 251 - 345, 31% identity in aa 5 - 103, 45% identity in aa 400 - 431" /codon_start=1 /transl_table=11 /product="putative sulfatase" /protein_id="NP_459089.1" /db_xref="GeneID:1251602" /translation="MSNKKNLSAEETDLTRRKLLTSAGILAAGGMLSGAVKADEKCAV KAKPAWDKPFTGEIPEKLPEGYNILLVVTDQERFFPTFPFPVPGRERLMKTGVTFCNH QNTSNVCTPSRSVLYTGLHMPQTKMFDNLGLPWMPYDLDPALGTTGHMMRELGYYTAY KGKWHLTEKLEKPLPDEKDEDIDVGDIPEPELHKIMEKYGFADYHGIGDIIGHSKGGY FYDSTTTAQTINWLRCKGQPLNDQHKPWFLAVNLVNPHDVMFIDTDKEGEKVQWRGEL DQDDNTLAPTQPPENELYQASWPNYPLPANRHQSFNEQGRPPAHLEYQTARAALEGQF PDEDRRWRKLLDYYFNCIRDCDTHLDRILNELDALKLTDKTIVVFTADHGELGGSHQM HGKGASVYKEQIHVPMIISHPAYPGNKKCQALTCHLDIAPTLVGLTGLPEEKQHQALG NRKGVNFSGLLKNPESVAVNAVRNASLYCYGMILYTDAHYLHRVIALQRDKQKTVAQI KQEISHLHPDFSHRSGTRMINDGRYKFARYFSLREHNTPETWEDLIKYNDLELYDLKN DPDENHNLAADKQKYQDLILTMNEKLNKIIKDEIGVDDGSFMPDAAHEPWDLTIEQFN RMAKD" misc_feature 96154..97398 /locus_tag="STM0084" /note="uncharacterized sulfatase subfamily; Region: sulfatase_like; cd16035" /db_xref="CDD:293759" misc_feature order(96178..96183,96280..96285,96445..96447,96451..96453, 96724..96726,97102..97107) /locus_tag="STM0084" /note="putative active site [active]" /db_xref="CDD:293759" misc_feature order(96178..96183,96283..96285,96445..96447,96451..96453, 96724..96726,97105..97107) /locus_tag="STM0084" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:293759" misc_feature <97540..97752 /locus_tag="STM0084" /note="Domain of unknown function (DUF4976); Region: DUF4976; cl20644" /db_xref="CDD:419068" gene 98245..98785 /gene="yabF" /locus_tag="STM0085" /db_xref="GeneID:1251603" regulatory 98245..98250 /regulatory_class="ribosome_binding_site" /gene="yabF" /locus_tag="STM0085" /note="putative RBS for yabF; RegulonDB:STMS1H000471" CDS 98255..98785 /gene="yabF" /locus_tag="STM0085" /EC_number="1.6.99.-" /note="similar to E. coli putative NAD(P)H oxidoreductase (AAC73157.1); Blastp hit to AAC73157.1 (176 aa), 87% identity in aa 1 - 176" /codon_start=1 /transl_table=11 /product="putative NAD(P)H oxidoreductase" /protein_id="NP_459090.1" /db_xref="GeneID:1251603" /translation="MILIIYAHPYPHHSHANKRMLEQAGTLENVEIRSLYHLYPDFNI DVAAEQEALSRASLIVWQHPMQWYSVPPLLKLWMDKVLTHGWAYGHGGTALHGKHLLW AVTTGGGENHFAIGSHPGFDVLSQPLQATALYCGLKWLSPFAMHCTFICDDDTLQAQA RQYKQRLLAWQEVNHG" misc_feature 98255..98782 /gene="yabF" /locus_tag="STM0085" /note="glutathione-regulated potassium-efflux system oxidoreductase KefF; Region: PRK00871" /db_xref="CDD:234852" gene 98765..100640 /gene="kefC" /locus_tag="STM0086" /db_xref="GeneID:1251604" regulatory 98765..98770 /regulatory_class="ribosome_binding_site" /gene="yabF" /locus_tag="STM0085" /note="putative RBS for kefC; RegulonDB:STMS1H000472" CDS 98778..100640 /gene="kefC" /locus_tag="STM0086" /note="similar to E. coli K+ efflux antiporter, glutathione-regulated (AAC73158.1); Blastp hit to AAC73158.1 (620 aa), 90% identity in aa 1 - 619" /codon_start=1 /transl_table=11 /product="CPA2 family K+ efflux antiporter, glutathione-regulated" /protein_id="NP_459091.1" /db_xref="GeneID:1251604" /translation="MDSHTLLQALIYLGSAALIVPIAVRLGLGSVLGYLIAGCIIGPW GLRLVTDAESILHFAEIGVVLMLFVIGLELDPQRLWKLRASVFGGGALQMGVCGGLIG LFCMFLGLRWQVAELIGMTLALSSTAIAMQAMNERNLTVSQVGRSAFAVLLFQDIAAI PLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLLGRYVTRPALRFVARSGLREV FSAVALFLVFGFGLLLEEVGLSMAMGAFLAGVLLASSEYRHALESDIEPFKGLLLGLF FIGVGMSIDFGTLVENPLRILLLLAGFLAIKIVMLWLVARPLGVPAKQRRWFAVLLGQ GSEFAFVVFGAAQMADVLEPEWAKALTLAVALSMAATPIFLVLLTRMEKTATGEAREA DEIDEEQPRVIVAGFGRFGQIAGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDA TRMDLLESAGAAKAEVLINAIDDPQTNLQLSELVKSHFPHLQIIARARDVDHYIRLRQ AGVAMPERETFEGALKSGRQALEALGLGRYEARERADLFRHFNTRMVEEMAKGENDPL SRAAAYKRTSAMLSEIITEDREHLSLIQRHGWQGTAEGKHSGEVADEPEVKPSI" misc_feature 98778..100634 /gene="kefC" /locus_tag="STM0086" /note="glutathione-regulated potassium-efflux system protein KefC; Provisional; Region: PRK03562" /db_xref="CDD:235131" gene 100826..101318 /gene="folA" /locus_tag="STM0087" /db_xref="GeneID:1251605" regulatory 100826..100831 /regulatory_class="ribosome_binding_site" /gene="folA" /locus_tag="STM0087" /note="putative RBS for folA; RegulonDB:STMS1H000473" CDS 100839..101318 /gene="folA" /locus_tag="STM0087" /EC_number="1.5.1.3" /note="trimethoprim resistance; similar to E. coli dihydrofolate reductase type I; trimethoprim resistance (AAC73159.1); Blastp hit to AAC73159.1 (159 aa), 96% identity in aa 1 - 159" /codon_start=1 /transl_table=11 /product="dihydrofolate reductase type I" /protein_id="NP_459092.1" /db_xref="GeneID:1251605" /translation="MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGR HTWESIGRPLPGRKNIVISSQPGTDDRVQWVKSVDEAIAACGDAPEIMVIGGGRVYEQ FLPKAQKLYLTHIDAEVEGDTHFPDYEPDDWESVFSEFHDADAQNSHSYCFEILERR" misc_feature 100839..101315 /gene="folA" /locus_tag="STM0087" /note="type 3 dihydrofolate reductase; Region: folA; PRK10769" /db_xref="CDD:182714" misc_feature order(100851..100853,100902..100904,100917..100919, 101007..101009,101118..101120,101136..101138, 101175..101177) /gene="folA" /locus_tag="STM0087" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:238127" misc_feature order(100857..100859,100878..100880,100968..100976, 101028..101030,101121..101132) /gene="folA" /locus_tag="STM0087" /note="NADP+ binding site [chemical binding]; other site" /db_xref="CDD:238127" gene complement(101424..102272) /gene="apaH" /locus_tag="STM0088" /db_xref="GeneID:1251606" CDS complement(101424..102272) /gene="apaH" /locus_tag="STM0088" /EC_number="3.6.1.41" /note="bis(5'-nucleosyl)-tetraphosphatase. (SW:APAH_SALTY)" /codon_start=1 /transl_table=11 /product="diadenosine tetraphosphatase" /protein_id="NP_459093.1" /db_xref="GeneID:1251606" /translation="MATYLIGDVHGCYDELIALLQQVEFTPDTDTLWLTGDLVARGPG SLDVLRYVKSLGNSVRLVLGNHDLHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWL RRQPLLQVDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMP NNWSPELSGLARLRFITNAFTRMRYCFPNGQLDMYSKASPENAPAPLKPWFAIPGPVS EAYSIAFGHWASLEGKGTPEGIYALDTGCCWGGELTCLRWEDKQYFVQPSNRQMDMGE GEAVNA" misc_feature complement(101436..102272) /gene="apaH" /locus_tag="STM0088" /note="bis(5'-nucleosyl)-tetraphosphatase (symmetrical); Region: apaH; TIGR00668" /db_xref="CDD:273208" gene complement(102283..102674) /gene="apaG" /locus_tag="STM0089" /db_xref="GeneID:1251607" CDS complement(102283..102660) /gene="apaG" /locus_tag="STM0089" /note="APAG protein (CORD protein). (SW:APAG_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459094.1" /db_xref="GeneID:1251607" /translation="MINSPRVCIQVQSVYIEAQSSPDDERYVFAYTVTIRNLGRAPVQ LLGRYWLITNGHGRETEVQGEGVVGVQPRIAPGEEYQYTSGAVIETPLGTMQGHYEMI DENGDAFTIDIPVFRLAVPTLIH" misc_feature complement(102286..102660) /gene="apaG" /locus_tag="STM0089" /note="CO2+/MG2+ efflux protein ApaG; Reviewed; Region: apaG; PRK05461" /db_xref="CDD:180098" gene complement(102663..103484) /gene="ksgA" /locus_tag="STM0090" /db_xref="GeneID:1251608" CDS complement(102663..103484) /gene="ksgA" /locus_tag="STM0090" /EC_number="2.1.1.-" /note="dimethyladenosine transferase. (SW:KSGA_SALTY)" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine-6-N',N'-adenosyl (rRNA) dimethyltransferase; kasugamycin resistance" /protein_id="NP_459095.1" /db_xref="GeneID:1251608" /translation="MNNRVHQGHLARKRFGQNFLNDRFVIDSIVSAINPQKGQAMVEI GPGLAALTEPVGERLDKLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELSA QLGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKEYGRL SVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHATMPYPVKDIRVLSRITTEAF NQRRKTIRNSLGNLFSVETLTEMGIDPAMRAENISVAQYCQMANYLSENAPLKES" misc_feature complement(102681..103484) /gene="ksgA" /locus_tag="STM0090" /note="16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity) [Translation, ribosomal structure and biogenesis]; Region: RsmA; COG0030" /db_xref="CDD:439801" regulatory complement(102669..102674) /regulatory_class="ribosome_binding_site" /gene="apaG" /locus_tag="STM0089" /note="putative RBS for apaG; RegulonDB:STMS1H000474" gene complement(103481..104470) /gene="pdxA" /locus_tag="STM0091" /db_xref="GeneID:1251609" CDS complement(103481..104470) /gene="pdxA" /locus_tag="STM0091" /note="pyridoxine phosphate biosynthetic protein PdxJ-PdxA subunit; similar to E. coli pyridoxine biosynthesis (AAC73163.1); Blastp hit to AAC73163.1 (329 aa), 92% identity in aa 1 - 329" /codon_start=1 /transl_table=11 /product="NAD-dependent dehydrogenase/carboxylase" /protein_id="NP_459096.1" /db_xref="GeneID:1251609" /translation="MSSAQRVVITPGEPAGSGPDLVVQLAQRAWPIELVVCADGALLT ERAAMLGLPLSLLPYSPDVPAAPQPAGTLTLLPVSLRAPAISGQLTVENGPYVVETLA RACDGCLNGEFAALITGPVHKGVINDAGISFTGHTEFFEERSQAKKVVMMLATEELRV ALATTHLPLRAIADAITPALLHEVIAILHHDLRTKFGIAEPRILVCGLNPHAGEGGHM GTEEIDTIIPVLDELRAQGMKLNGPLPADTLFQPKYLDNADAVLAMYHDQGLPVLKYQ GFGRGVNITLGLPFIRTSVDHGTALELAGRGKADVGSFITALNLAIKMIVNTQ" misc_feature complement(103484..104470) /gene="pdxA" /locus_tag="STM0091" /note="4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed; Region: pdxA; PRK00232" /db_xref="CDD:234696" gene complement(104470..105767) /gene="surA" /locus_tag="STM0092" /db_xref="GeneID:1251610" CDS complement(104470..105756) /gene="surA" /locus_tag="STM0092" /EC_number="5.2.1.8" /note="survival protein; similar to E. coli survival protein (AAC73164.1); Blastp hit to AAC73164.1 (428 aa), 91% identity in aa 1 - 428" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase" /protein_id="NP_459097.1" /db_xref="GeneID:1251610" /translation="MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDG LMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIILQMGQKMGVKITDEQLDQAIAN IAKQNNMTMDQMRSRLAYDGLNYSTYRNQIRKEMIISEVRNNEVRRRITVLPQEVDAL AKQIGTQNDASTELNLSHILIALPENPTSEQVNDAQRQAESIVEEARNGADFGKLAIT YSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGQ SQSISVTEVHARHILLKPSPIMNDQQARLKLEEIAADIKSGKTTFAAAAKEYSQDPGS ANQGGDLGWATPDIFDPAFRDALTKLHKGQISAPVHSSFGWHLIELLDTRKVDKTDAA QKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN" misc_feature complement(104473..105702) /gene="surA" /locus_tag="STM0092" /note="peptidyl-prolyl cis-trans isomerase SurA; Provisional; Region: PRK10770" /db_xref="CDD:236758" regulatory complement(105762..105767) /regulatory_class="ribosome_binding_site" /gene="surA" /locus_tag="STM0092" /note="putative RBS for surA; RegulonDB:STMS1H000475" gene complement(105810..108170) /gene="imp" /locus_tag="STM0093" /db_xref="GeneID:1251611" CDS complement(105810..108170) /gene="imp" /locus_tag="STM0093" /note="similar to E. coli organic solvent tolerance (AAC73165.1); Blastp hit to AAC73165.1 (784 aa), 91% identity in aa 1 - 784" /codon_start=1 /transl_table=11 /product="organic solvent tolerance protein" /protein_id="NP_459098.1" /db_xref="GeneID:1251611" /translation="MKKRIPTLLATMIASALYSHQGLAADLASQCMLGVPSYDRPLVK GDTNDLPVTINADNAKGNYPDDAVFTGNVDIMQGNSRLQADEVQLHQKQAEGQPEPVR TVDALGNVHYDDNQVILKGPKGWANLNTKDTNVWEGDYQMVGRQGRGKADLMKQRGEN RYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKVGPVPIFYSPYLQL PVGDKRRSGFLIPNAKYTTKNYFEFYLPYYWNIAPNMDATITPHYMHRRGNIMWENEF RYLTQAGEGVMELDYLPSDKVYEDDHPKEGDKHRWLFYWQHSGVMDQVWRFNVDYTKV SDSSYFNDFDSKYGSSTDGYATQKFSVGYAVQNFDATVSTKQFQVFNDQNTSSYSAEP QLDVNYYHNDLGPFDTRIYGQAVHFVNTKDNMPEATRVHLEPTINLPLSNRWGSLNTE AKLMATHYQQTNLDSYNSDPNNKNKLEDSVNRVMPQFKVDGKLIFERDMAMLAPGYTQ TLEPRVQYLYVPYRDQSGIYNYDSSLLQSDYNGLFRDRTYGGLDRIASANQVTTGVTT RIYDDAAVERFNVSVGQIYYFTESRTGDDNIKWENDDKTGSLVWAGDTYWRISERWGL RSGVQYDTRLDSVATSSSSLEYRRDQDRLVQLNYRYASPEYIQATLPSYYSTAEQYKN GINQVGAVASWPIADRWSIVGAYYFDTNSSKPADQMLGLQYNSCCYAIRVGYERKLNG WDNDKQHAIYDNAIGFNIELRGLSSNYGLGTQEMLRSNILPYQSSM" misc_feature complement(105813..108170) /gene="imp" /locus_tag="STM0093" /note="LPS assembly outer membrane complex protein LptD; Provisional; Region: PRK03761" /db_xref="CDD:235158" gene 108413..109236 /gene="djlA" /locus_tag="STM0094" /db_xref="GeneID:1251612" regulatory 108413..108418 /regulatory_class="ribosome_binding_site" /gene="djlA" /locus_tag="STM0094" /note="putative RBS for djlA; RegulonDB:STMS1H000476" CDS 108424..109236 /gene="djlA" /locus_tag="STM0094" /note="similar to E. coli putative DNA binding protein (AAC73166.1); Blastp hit to AAC73166.1 (271 aa), 95% identity in aa 1 - 271" /codon_start=1 /transl_table=11 /product="DnaJ like chaperone protein" /protein_id="NP_459099.1" /db_xref="GeneID:1251612" /translation="MQYWGKIIGVAVALMMGGGFWGVVLGLLVGHMFDKARSRKMAWF ANQRERQALFFATTFEVMGHLTKSKGRVTEADIHIASQLMDRMNLHGDSRTAAQNAFR VGKADNYPLREKMRQFRSVCFGRFDLIRMFLEIQIQAAFADGSLHPNEREVLYVIAEE LGISRVQFDQFLRMMQGGAQFGGGYHQQSGGGWQQAQRGPTLEDACNVLGVKTTDDAT TIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAYELIKEQKGFK" misc_feature 108424..109233 /gene="djlA" /locus_tag="STM0094" /note="co-chaperone DjlA; Region: djlA; PRK09430" /db_xref="CDD:236512" gene complement(109331..110002) /gene="rluA" /locus_tag="STM0095" /db_xref="GeneID:1251613" CDS complement(109331..109990) /gene="rluA" /locus_tag="STM0095" /EC_number="4.2.1.70" /note="similar to E. coli pseudouridylate synthase (AAC73169.1); Blastp hit to AAC73169.1 (219 aa), 95% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridylate 746 synthase" /protein_id="NP_459100.1" /db_xref="GeneID:1251613" /translation="MGMENYNPPQEPWLVILYQDEHIMVVNKPSGLLSVPGRLEAHKD SIMTRIQRDYPQAESVHRLDMATSGVIVVALTKAAERELKRQFREREPKKQYVARVWG HPSPAEGLVDLPLICDWPNRPKQKVCYETGKPAQTEYNVVEFAADNTARVVLKPITGR SHQLRVHMLALGHPILGDRFYASPEALSLAPRLQLHAEMLTITHPAYGNSMTFKVPAD F" misc_feature complement(109334..109990) /gene="rluA" /locus_tag="STM0095" /note="bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA; Region: PRK10158" /db_xref="CDD:236659" misc_feature complement(order(109496..109498,109799..109810)) /gene="rluA" /locus_tag="STM0095" /note="active site" /db_xref="CDD:211346" regulatory complement(109997..110002) /regulatory_class="ribosome_binding_site" /gene="rluA" /locus_tag="STM0095" /note="putative RBS for rluA; RegulonDB:STMS1H000477" gene complement(110002..112908) /gene="hepA" /locus_tag="STM0096" /db_xref="GeneID:1251614" CDS complement(110002..112908) /gene="hepA" /locus_tag="STM0096" /note="putative SNF2 family RNA helicase; similar to E. coli probable ATP-dependent RNA helicase (AAC73170.1); Blastp hit to AAC73170.1 (968 aa), 93% identity in aa 1 - 968" /codon_start=1 /transl_table=11 /product="RNA polymerase associated protein" /protein_id="NP_459101.1" /db_xref="GeneID:1251614" /translation="MPFTLGQRWISDTESELGLGTVVAMDARTVTLLFPSTGENRLYA RSDSPVTRVMFNPGDTITSHEGWQLHIDEVKEENGLLVYVGTRLDTEETNVTLREVLL DSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPYSGLRGQRTNLIPHQLN IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPETLQHQWLVE MLRRFNLRFALFDDERYTEAQHDAYNPFETEQLVICSLDFARRNKQRLEHLCDAEWDL LVVDEAHHLVWSTDAPSREYMAIEQLAERVPGVLLLTATPEQLGMESHFARLRLLDPN RFHDFEQFVEEQKNYRPVADAVAMLLAGNKLSNDELNRLGDLIGEQDIEPLLQAANSD RDDAQAARDELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTVKLPLPTQYQTAIKV SGIMGARKSPEDRARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLV ICAKATTALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIG SEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRW YHEGLDAFEHTCPTGRAIYDSAYASLINYLAAPEETDGFDDLIKSCREQHEALKAQLE QGRDRLLEIHSNGGEKAQQLAQSIEEQDDDTNLIAFAMNLFDIVGINQDDRGDNLIVL TPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGS STISLLKNKALPVGTLLVELVYVVEAQAPKQLQLNRFLPPTPVRMLLDKNGNNLAAQV EFETFNRQLSAVNRHTGSKLVNAVQQDVHAILQLGETQIEKSARALIDNARREADEKL SGELSRLEALRAVNPNIRDDELAAIDSNRQQVLESLNQAGWRLDALRLIVVTHQ" misc_feature complement(110011..112905) /gene="hepA" /locus_tag="STM0096" /note="RNA polymerase-associated protein RapA; Region: PRK04914" /db_xref="CDD:235319" gene complement(113082..115445) /gene="polB" /locus_tag="STM0097" /db_xref="GeneID:1251615" CDS complement(113082..115433) /gene="polB" /locus_tag="STM0097" /EC_number="2.7.7.7" /note="3'->5' exonuclease; similar to E. coli DNA polymerase II (AAC73171.1); Blastp hit to AAC73171.1 (783 aa), 89% identity in aa 1 - 783" /codon_start=1 /transl_table=11 /product="DNA polymerase II" /protein_id="NP_459102.1" /db_xref="GeneID:1251615" /translation="MAQAGFILTRHWRDTPQGTEVSFWLATDNGPVQATLAPQESVAF IPTSQTSRAASLLQAEKDYRLTPLQLRDFHRQPVSGLYCRTHRQLMRMEKLLRENGVT VYEADVRPPERYLMERFITSPVWVDGEMRNGVIRNARLKPHSDYRPPLKWVSLDIETT RHGELYCIGLEGCGQRTVYMLGPANGDDHQLDFELVYVASRPQLLEKLNAWFAEHDPD VIIGWNVVQFDLRMLQKHAERYRIPLRLGRDNSELEWREHGFKNGVFFAQARGRVIID GIDALKSAFWNFSSFSLEAVSQELLGEGKSIDNPWDRMDEIDRRFAQDKPALATYNLK DCELVTRIFHKTEIMPFLLERATINGLPVDRHGGSVAAFGHLYFPRMHRAGYVAPNLG EVPPLASPGGYVMDSQPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGMAQPDPEHS TEGFLDAWFSREKHCLPEIVSQIWHGRDEAKRQGNKPLSQALKIIMNAFYGVLGTTAC RFFDPRLASSITMRGHAIMRQTKALIEAQGYDVIYGDTDSTFVWLRRAHSEADAAEIG HRLVRHVNEWWAQTLQQQNLTSALELEFETHFCRFLMPTIRGADTGSKKRYAGLIQEG DSQRMVFKGLETVRTDWTPLAQRFQQELYLRVFRNEPYQDYVRETIDKLMAGELDAQL VYRKRLRRPLHEYQRNVPPHVRAARLADEQNLKQGRPAQYQNRGAIKYVWTVNGPEPV DYQQSPLDYEHYLTRQLQPVAEGILPFVEDNFATLLTGQLGLF" misc_feature complement(113085..115433) /gene="polB" /locus_tag="STM0097" /note="DNA polymerase II; Reviewed; Region: PRK05762" /db_xref="CDD:235595" regulatory complement(115440..115445) /regulatory_class="ribosome_binding_site" /gene="polB" /locus_tag="STM0097" /note="putative RBS for polB; RegulonDB:STMS1H000478" gene complement(115477..116102) /locus_tag="STM0098" /db_xref="GeneID:1251616" CDS complement(115477..116097) /locus_tag="STM0098" /note="similar to E. coli orf, hypothetical protein (AAC76121.1); Blastp hit to AAC76121.1 (230 aa), 24% identity in aa 19 - 171" /codon_start=1 /transl_table=11 /product="putative secreted protein" /protein_id="NP_459103.1" /db_xref="GeneID:1251616" /translation="MKYRYIIRIAAGIILIMATVFIHNAIAIYQFSQQNQTRVADCAI VAGAGVSGKTPSPVFQARLDHAIWLYQQHIVRALVLTGGYGAGATVSDAAIARQYVLE KGIPAKAIFIEERSTVTRENIRYAKQILRQQQWRTALLVSDPLHMLRLKTIAQDNGID SRSSPTRSTRYKSWWAQTRFLLRETFYYSGYRLLRYMPVQNNSITP" misc_feature complement(115507..116088) /locus_tag="STM0098" /note="Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family [Cell wall/membrane/envelope biogenesis]; Region: ElyC; COG1434" /db_xref="CDD:441043" regulatory complement(116097..116102) /regulatory_class="ribosome_binding_site" /locus_tag="STM0098" /note="putative RBS for STM0098; RegulonDB:STMS1H000479" gene 116294..116601 /locus_tag="STM0099" /db_xref="GeneID:1251617" regulatory 116294..116299 /regulatory_class="ribosome_binding_site" /locus_tag="STM0099" /note="putative RBS for STM0099; RegulonDB:STMS1H000480" CDS 116299..116601 /locus_tag="STM0099" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_446563.1" /db_xref="GeneID:1251617" /translation="MNVACDGPSGQGPWMGRVIRSQHISNSKYEGYNDAGVDSRYNYP ITANFESFLFTVFTHVLAVLCQVCFHTLSIFQKGACSNLLLISRINKKAIFFVCFN" gene 116816..117235 /locus_tag="STM0100" /db_xref="GeneID:1251618" CDS 116816..117235 /locus_tag="STM0100" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459105.1" /db_xref="GeneID:1251618" /translation="MNVSMQARLVGNDRYLFVNTQRANPSIKTVSRFFEYKTWTEQIW RTEIIENGNAFFHWQGHDRKNGHRDTIINYLLNGQRWQSTIEDYIFFHALEGKAWQGH YDNIIEYVSSDHYVYQSAFAEYITDQIHQRAPHGTRF" misc_feature 116828..117190 /locus_tag="STM0100" /note="Domain of unknown function (DUF4751); Region: DUF4751; pfam15942" /db_xref="CDD:374242" gene complement(117241..117949) /gene="araD" /locus_tag="STM0101" /db_xref="GeneID:1251619" CDS complement(117241..117936) /gene="araD" /locus_tag="STM0101" /EC_number="5.1.3.4" /note="L-ribulose-5-phosphate 4-epimerase. (SW:ARAD_SALTY)" /codon_start=1 /transl_table=11 /product="L-ribulose-5-phosphate 4-epimerase" /protein_id="NP_459106.1" /db_xref="GeneID:1251619" /translation="MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDRERGVLVIKPS GVDYSVMTADDMVVVSLESGEVVEGHKKPSSDTPTHRLLYQAFPTIGGIVHTHSRHAT IWAQAGQPIPATGTTHADYFYGTIPCTRKMTEAEINGEYEWETGNVIVETFEKQGIDA AQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEVAYMGIFCRQLAPQLPDMQQSLLDKH YLRKHGAKAYYGQ" misc_feature complement(117244..117936) /gene="araD" /locus_tag="STM0101" /note="L-ribulose-5-phosphate 4-epimerase AraD; Region: araD; PRK08193" /db_xref="CDD:236181" misc_feature complement(order(117280..117282,117340..117342, 117361..117363,117373..117375,117394..117396, 117427..117429,117544..117546,117586..117591, 117595..117597,117616..117624,117637..117642, 117646..117648,117787..117792,117796..117798, 117868..117870,117892..117894,117904..117906)) /gene="araD" /locus_tag="STM0101" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238232" misc_feature complement(order(117424..117426,117646..117648, 117652..117654,117709..117717,117802..117807, 117853..117855)) /gene="araD" /locus_tag="STM0101" /note="active site" /db_xref="CDD:238232" misc_feature complement(order(117424..117426,117646..117648, 117652..117654)) /gene="araD" /locus_tag="STM0101" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238232" regulatory complement(117944..117949) /regulatory_class="ribosome_binding_site" /gene="araD" /locus_tag="STM0101" /note="putative RBS for araD; RegulonDB:STMS1H000481" gene complement(118077..119591) /gene="araA" /locus_tag="STM0102" /db_xref="GeneID:1251620" CDS complement(118077..119579) /gene="araA" /locus_tag="STM0102" /EC_number="5.3.1.4" /note="L-arabinose isomerase. (SW:ARAA_SALTY)" /codon_start=1 /transl_table=11 /product="L-arabinose isomerase" /protein_id="NP_459107.1" /db_xref="GeneID:1251620" /translation="MTIFDNYEVWFVIGSQHLYGAETLRQVTQHAEHVVNALNTEAKL PCKLVLKPLGTSPDEITAICRDANYDDRCAGLVVWLHTFSPAKMWINGLSILNKPLLQ FHTQFNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHAVVTGHWQDKEAHTRI GAWMRQAVSKQDTRQLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVV NSIGDGDINALIDEYESSYTLTPATQIHGDKRQNVREAARIELGMKRFLEQGGFHAFT TTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMED YTYHFEKGNDLVLGSHMLEVCPSIAVEEKPILDVQHLGIGGKEDPARLIFNTQTGPAI VASLIDLGDRYRLLVNCIDTVKTPHSLPKLPVANALWKAQPDLPTASEAWILAGGAHH TVFSHALDLNDMRQFAEIHDIEIAVIDNDTHLPAFKDALRWNEVYYGFKR" misc_feature complement(118080..119579) /gene="araA" /locus_tag="STM0102" /note="L-arabinose isomerase; Provisional; Region: PRK02929" /db_xref="CDD:179503" misc_feature complement(order(118737..118742,118767..118769, 118932..118934,118944..118964,118983..118985, 118992..118994,119028..119030,119049..119051, 119157..119162,119316..119318,119376..119378, 119385..119387,119397..119399)) /gene="araA" /locus_tag="STM0102" /note="putative hexamer (dimer of trimers) interface [polypeptide binding]; other site" /db_xref="CDD:239619" misc_feature complement(order(118107..118112,118179..118181, 118233..118235,118242..118244,118251..118253, 118260..118265,118308..118310,118314..118319, 118323..118325,118380..118388,118563..118580, 119010..119021,119103..119105,119136..119138, 119142..119144,119157..119159,119163..119168, 119175..119177,119184..119189,119196..119201, 119217..119219,119226..119234,119241..119243, 119247..119249,119253..119255,119262..119264, 119268..119270,119316..119327,119331..119333)) /gene="araA" /locus_tag="STM0102" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:239619" misc_feature complement(order(118230..118235,118581..118583, 118662..118664,118743..118745,119331..119333)) /gene="araA" /locus_tag="STM0102" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:239619" misc_feature complement(order(118230..118232,118581..118583, 118662..118664)) /gene="araA" /locus_tag="STM0102" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:239619" regulatory complement(119586..119591) /regulatory_class="ribosome_binding_site" /gene="araA" /locus_tag="STM0102" /note="putative RBS for araA; RegulonDB:STMS1H000482" gene complement(119590..121412) /gene="araB" /locus_tag="STM0103" /db_xref="GeneID:1251621" CDS complement(119590..121299) /gene="araB" /locus_tag="STM0103" /EC_number="2.7.1.16" /note="L-ribulokinase. (SW:KIRI_SALTY)" /codon_start=1 /transl_table=11 /product="L-ribulokinase" /protein_id="NP_459108.1" /db_xref="GeneID:1251621" /translation="MAIAIGLDFGSDSVRALAVDCATGDEIATSVEWYPRWQEGRYCD GPNNQFRHHPRDYMESMEAALKAVLAQLSAAQRANVVGIGVDSTGSTPAPIDADGNVL ALRPEFAENPNAMFVLWKDHTAVEEADEITRLCHKPGKVDYSRYIGGIYSSEWFWAKI LHVTRQDSAVAQAAVSWIELCDWVPALLSGTTRPQDIRRGRCSAGHKTLWHESWGGLP PASFFDELDPCINRHLRYPLFSETFTADLPVGTLCAEWAQRLDLPESVVISGGAFDCH MGAVGAGAQPNTLVKVIGTSTCDILIADKQSVGDRAVKGICGQVDGSVVPNFIGLEAG QSAFGDIYAWFSRVLSWPLEQLAAQHPELKPQINASQKQLLPALTDAWAKNPSLDHLP VVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLVASTAFGARAIQECFTDQGI AVNNVMALGGIARKNQVIMQVCCDVLNRPLQIVASDQCCALGAAIFAAVAAKVHADIP AAQQSMASAVERTLRPHPEQAQRFEQLYRRYQQWALSAEQHYLPTAAPAPTTPANQAI LTH" misc_feature complement(119650..121299) /gene="araB" /locus_tag="STM0103" /note="ribulokinase; Provisional; Region: PRK04123" /db_xref="CDD:235221" regulatory complement(121307..121312) /regulatory_class="ribosome_binding_site" /gene="araB" /locus_tag="STM0103" /note="putative RBS for araB; RegulonDB:STMS1H000483" protein_bind complement(121352..121370) /gene="araB" /locus_tag="STM0103" /note="putative binding site for AraC, RegulonDB: STMS1H000003" /bound_moiety="AraC" protein_bind 121374..121392 /note="putative binding site for AraC, RegulonDB: STMS1H000008" /bound_moiety="AraC" protein_bind complement(121378..121396) /gene="araB" /locus_tag="STM0103" /note="putative binding site for AraC, RegulonDB: STMS1H000007" /bound_moiety="AraC" regulatory complement(121385..121393) /regulatory_class="minus_10_signal" /gene="araB" /locus_tag="STM0103" /note="putative -10_signal for araB; RegulonDB:STMLTH004463" regulatory complement(121404..121412) /regulatory_class="minus_35_signal" /gene="araB" /locus_tag="STM0103" /note="putative -35_signal for araB; RegulonDB:STMLTH004463" protein_bind complement(121406..121433) /note="putative binding site for CRP, RegulonDB: STMS1H000094" /bound_moiety="CRP" protein_bind 121412..121432 /note="putative binding site for CRP, RegulonDB: STMS1H000082" /bound_moiety="CRP" protein_bind 121430..121448 /note="putative binding site for AraC, RegulonDB: STMS1H000012" /bound_moiety="AraC" protein_bind 121464..121482 /note="putative binding site for AraC, RegulonDB: STMS1H000006" /bound_moiety="AraC" gene 121528..122485 /gene="araC" /locus_tag="STM0104" /db_xref="GeneID:1251622" regulatory 121528..121536 /regulatory_class="minus_35_signal" /gene="araC" /locus_tag="STM0104" /note="putative -35_signal for araC; RegulonDB:STMLTH004464" regulatory 121552..121560 /regulatory_class="minus_10_signal" /gene="araC" /locus_tag="STM0104" /note="putative -10_signal for araC; RegulonDB:STMLTH004464" protein_bind 121590..121608 /gene="araC" /locus_tag="STM0104" /note="putative binding site for AraC, RegulonDB: STMS1H000004" /bound_moiety="AraC" protein_bind complement(121602..121620) /note="putative binding site for AraC, RegulonDB: STMS1H000009" /bound_moiety="AraC" regulatory 121632..121637 /regulatory_class="ribosome_binding_site" /gene="araC" /locus_tag="STM0104" /note="putative RBS for araC; RegulonDB:STMS1H000484" CDS 121640..122485 /gene="araC" /locus_tag="STM0104" /note="arabinose operon regulatory protein. (SW:ARAC_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator (AraC/XylS family) for ara operon" /protein_id="NP_459109.1" /db_xref="GeneID:1251622" /translation="MAETQNDPLLPGYSFNAHLVAGLTPIEANGYLDFFIDRPLGMKG YILNLTIRGEGVINNNGEQFVCRPGDILLFPPGEIHHYGRHPDASEWYHQWVYFRPRA YWQEWLTWPTIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRYSELLAINLLEQLL LRRMAVINESLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQ LGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEF RAGCE" misc_feature 121640..122482 /gene="araC" /locus_tag="STM0104" /note="arabinose operon transcriptional regulator AraC; Region: PRK10572" /db_xref="CDD:236717" gene 122593..123371 /gene="yabI" /locus_tag="STM0105" /db_xref="GeneID:1251623" regulatory 122593..122598 /regulatory_class="ribosome_binding_site" /gene="yabI" /locus_tag="STM0105" /note="putative RBS for yabI; RegulonDB:STMS1H000485" CDS 122604..123371 /gene="yabI" /locus_tag="STM0105" /note="similar to E. coli orf, hypothetical protein (AAC73176.1); Blastp hit to AAC73176.1 (254 aa), 89% identity in aa 1 - 253" /codon_start=1 /transl_table=11 /product="putative DedA family membrane protein" /protein_id="NP_459110.1" /db_xref="GeneID:1251623" /translation="MQALLEHFITQSTLYSLIAVLLVAFLESLALVGLILPGTVLMAG LGALIGSGELNFWHAWLVGIIGCLMGDWISFWLGWRFKKPLHRWSFMKKNKSLLDKTE HALHQHSMFTILVGRFVGPTRPLVPMVAGMLDLPVAKFIGPNLIGCLLWPPFYFLPGI LAGAAIDIPSDMQSGDFKWLLLATALLLWVGGWLCWRLWRSGKAAVDRLTAYFPRSRL LYLAPLTLGIGVVALVVLVRHPLMPVYIDILRKVVGY" misc_feature 122604..123218 /gene="yabI" /locus_tag="STM0105" /note="Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family [Cell wall/membrane/envelope biogenesis]; Region: DedA; COG0586" /db_xref="CDD:440351" gene complement(123410..124136) /gene="yabJ" /locus_tag="STM0106" /db_xref="GeneID:1251624" CDS complement(123410..124117) /gene="yabJ" /locus_tag="STM0106" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73177.1); Blastp hit to AAC73177.1 (232 aa), 84% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="putative ABC-transport protein" /protein_id="NP_459111.1" /db_xref="GeneID:1251624" /translation="MLKLIDITWLYHHLPMRFTLAVERGEQVAILGPSGAGKSTLLNL IAGFLAPASGTLLIAGDDHTLTPPSRRPVSMLFQENNLFSHLNVQQNIGLGLNPGLTL NASQREKRDAIAHQMGIESLMTRLPGELSGGQRQRVALARCLVREQPVLLLDEPFSAL DPALRQEMLTLVSDICRERQLTLLMVSHSVEDAARIAPRSIVVADGRIAWQGKTDELL SGQASASALLGIKSHIL" misc_feature complement(123422..124117) /gene="yabJ" /locus_tag="STM0106" /note="thiamine ABC transporter ATP-binding protein ThiQ; Region: thiQ; PRK10771" /db_xref="CDD:182716" misc_feature complement(124001..124024) /gene="yabJ" /locus_tag="STM0106" /note="Walker A/P-loop; other site" /db_xref="CDD:213179" misc_feature complement(order(123554..123556,123653..123658, 123884..123886,123998..124006,124010..124015)) /gene="yabJ" /locus_tag="STM0106" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213179" misc_feature complement(123884..123895) /gene="yabJ" /locus_tag="STM0106" /note="Q-loop/lid; other site" /db_xref="CDD:213179" misc_feature complement(123701..123730) /gene="yabJ" /locus_tag="STM0106" /note="ABC transporter signature motif; other site" /db_xref="CDD:213179" misc_feature complement(123653..123670) /gene="yabJ" /locus_tag="STM0106" /note="Walker B; other site" /db_xref="CDD:213179" misc_feature complement(123635..123646) /gene="yabJ" /locus_tag="STM0106" /note="D-loop; other site" /db_xref="CDD:213179" misc_feature complement(123548..123568) /gene="yabJ" /locus_tag="STM0106" /note="H-loop/switch region; other site" /db_xref="CDD:213179" gene complement(124101..125728) /gene="yabK" /locus_tag="STM0107" /db_xref="GeneID:1251625" CDS complement(124101..125711) /gene="yabK" /locus_tag="STM0107" /note="similar to E. coli putative transport system permease protein (AAC73178.1); Blastp hit to AAC73178.1 (536 aa), 89% identity in aa 1 - 536" /codon_start=1 /transl_table=11 /product="putative binding-protein-dependent transport system inner membrane component" /protein_id="NP_459112.1" /db_xref="GeneID:1251625" /translation="MATRRQPLIPGWLIPGLCAAALMITVSLAAFLALWLNAPSGAWS TIWRDSYLWHVVRFSFWQAFLSAVLSVVPAVFLARALYRRRFPGRLALLRLCAMTLIL PVLVAVFGILSVYGRQGWLASLWQMLGLQWTFSPYGLQGILLAHVFFNLPMASRLLLQ SLESIPGEQRQLAAQLGMRGWHFFRFVEWPWLRRQIPPVAALIFMLCFASFATVLSLG GGPQATTIELAIFQALSYDYDPARAAMLALIQMVCCLALVLLSQRLSKAIAPGMTLTQ GWRDPDDRLHSRLTDALLIVLALLLLLPPLVAVVVDGVNRSLPEVLAQPILWQAVWTS LRIALAAGVLCVVLTMMLLWSSRELRQRQQLFAGQTLELSGMLILAMPGIVLATGFFL LLNNSVGLPESADGIVIFTNALMAIPYALKVLENPMRDITARYGMLCQSLGIEGWSRL KIVELRALKRPLAQALAFACVLSIGDFGVVALFGNDNFRTLPFYLYQQIGSYRSQDGA VTALILLLLCFTLFTLIEKLPGRHAKTD" misc_feature complement(124107..125681) /gene="yabK" /locus_tag="STM0107" /note="thiamine transporter membrane protein; Reviewed; Region: thiP; PRK09433" /db_xref="CDD:181853" regulatory complement(124131..124136) /regulatory_class="ribosome_binding_site" /gene="yabJ" /locus_tag="STM0106" /note="putative RBS for yabJ; RegulonDB:STMS1H000486" gene complement(125687..126680) /gene="tbpA" /locus_tag="STM0108" /db_xref="GeneID:1251626" CDS complement(125687..126670) /gene="tbpA" /locus_tag="STM0108" /note="similar to E. coli thiamin-binding periplasmic protein (AAC73179.1); Blastp hit to AAC73179.1 (327 aa), 91% identity in aa 1 - 327" /codon_start=1 /transl_table=11 /product="thiamine-binding periplasmic protein" /protein_id="NP_459113.1" /db_xref="GeneID:1251626" /translation="MLKKYLPLLLLCAAPAFAKPVLTVYTYDSFAADWGPGPAVKKAF EADCNCELKLVALEDGVSLLNRLRMEGKNSKADVVLGLDNNLLEAATQTKLFAKSGVA NEAVKVPGGWKNDTFVPFDYGYFAFVYDKSKLKNPPKSLKELVESDQKWRVIYQDPRT STPGLGLLLWMRKVYGDNAPQAWQKLAAKTVTVTKGWSEAYGLFLKGESDLVLSYTTS PAYHIIEEKKDNYAAANFSEGHYLQVEVAARTVASKQPELAEKFLKFMVSPAFQNAIP TGNWMYPVADVALPAGFESLAKPATTLEFTPQQVAAQRQAWISEWQRAVSR" misc_feature complement(125690..126616) /gene="tbpA" /locus_tag="STM0108" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" misc_feature complement(order(126017..126022,126026..126028, 126077..126085,126182..126187)) /gene="tbpA" /locus_tag="STM0108" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270263" regulatory complement(125723..125728) /regulatory_class="ribosome_binding_site" /gene="tbpA" /locus_tag="STM0108" /note="putative RBS for yabK; RegulonDB:STMS1H000487" regulatory complement(126675..126680) /regulatory_class="ribosome_binding_site" /gene="tbpA" /locus_tag="STM0108" /note="putative RBS for tbpA; RegulonDB:STMS1H000488" gene complement(126848..128522) /gene="yabN" /locus_tag="STM0109" /db_xref="GeneID:1251627" CDS complement(126848..128506) /gene="yabN" /locus_tag="STM0109" /note="similar to E. coli putative transport protein (AAC73180.1); Blastp hit to AAC73180.1 (551 aa), 85% identity in aa 1 - 551" /codon_start=1 /transl_table=11 /product="putative periplasmic binding protein of transport system" /protein_id="NP_459114.1" /db_xref="GeneID:1251627" /translation="MPSGRLQQQFIRLWQCCDGKTQDTTLNELADLLNCSRRHMRTLL NTMQARGWLTWEAEVGRGKRSRLTFLYTGLALQQQRAEDLLEQDRIDQLVQLVGDKSA VRQMLISHLGRSFRQGRHILRVLYYRPMHNLLPGTALRRSETHIARQIFSSLTRVNEE NGELEADIAHHWQQISPLLWRFYLRPGIHFHHGRELEMEDVISSLTRINTLPLYSHIT KIDSPTAWTLDIHLSQPDRWLPWLLGQVPAMILPRKWETLANFASHPIGTGPYAVRRN TPNQLKILAFDDYFGYRALIDEVNVWVLPDISEEPACGLMLEGPIQGGEKAIESRLEE GCYYLLFDARTPRGAHPQVREWVSHVLSPTNLLYHADEPLQQLWFPAYGLLPRWHHAR PGPGEKPAGLETLTLTFYREHIEHRVIARIMSALLAEHQVHLHIQEIDYDQWHAGEIE SDIWLNSANFTLPLDFSLFAHLCEVPLLQNCIPRDWQGDAAQWRAGEMNLANWCQQLL ANKAIVPLIHHWLIIQGQRSMRGLRMNTLGWFDFKSAWFAPPDP" misc_feature complement(126851..128506) /gene="yabN" /locus_tag="STM0109" /note="HTH-type transcriptional regulator SgrR; Region: PRK13626" /db_xref="CDD:184188" regulatory complement(128517..128522) /regulatory_class="ribosome_binding_site" /gene="yabN" /locus_tag="STM0109" /note="putative RBS for yabN; RegulonDB:STMS1H000489" gene complement(129057..129674) /gene="leuD" /locus_tag="STM0110" /db_xref="GeneID:1251628" CDS complement(129057..129662) /gene="leuD" /locus_tag="STM0110" /EC_number="4.2.1.33" /note="3-isopropylmalate dehydratase small subunit. (SW:LEUD_SALTY)" /codon_start=1 /transl_table=11 /product="3-isopropylmalate isomerase (dehydratase), subunit with LeuC" /protein_id="NP_459115.1" /db_xref="GeneID:1251628" /translation="MAEKFTQHTGLVVPLDAANVDTDAIIPKQFLQKVTRTGFGAHLF NDWRFLDEKGQQPNPEFVLNFPEYQGASILLARENFGCGSSREHAPWALTDYGFKVVI APSFADIFYGNSFNNQLLPVTLSDAQVDELFALVKANPGIKFEVDLEAQVVKAGDKTY SFKIDDFRRHCMLNGLDSIGLTLQHEDAIAAYENKQPAFMR" misc_feature complement(129060..129656) /gene="leuD" /locus_tag="STM0110" /note="3-isopropylmalate dehydratase small subunit; Region: leuD; PRK01641" /db_xref="CDD:179314" misc_feature complement(129405..129413) /gene="leuD" /locus_tag="STM0110" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238809" regulatory complement(129669..129674) /regulatory_class="ribosome_binding_site" /gene="leuD" /locus_tag="STM0110" /note="putative RBS for leuD; RegulonDB:STMS1H000490" gene complement(129673..131086) /gene="leuC" /locus_tag="STM0111" /db_xref="GeneID:1251629" CDS complement(129673..131073) /gene="leuC" /locus_tag="STM0111" /EC_number="4.2.1.33" /note="3-isopropylmalate dehydratase large subunit. (SW:LEU2_SALTY)" /codon_start=1 /transl_table=11 /product="3-isopropylmalate isomerase (dehydratase), subunit with LeuD" /protein_id="NP_459116.1" /db_xref="GeneID:1251629" /translation="MAKTLYEKLFDAHVVFEAPNETPLLYIDRHLVHEVTSPQAFDGL RAHHRPVRQPGKTFATMDHNVSTQTKDINASGEMARIQMQELIKNCNEFGVELYDLNH PYQGIVHVMGPEQGVTLPGMTIVCGDSHTATHGAFGALAFGIGTSEVEHVLATQTLKQ GRAKTMKIEVTGNAAPGITAKDIVLAIIGKTGSAGGTGHVVEFCGDAIRALSMEGRMT LCNMAIEMGAKAGLVAPDETTFNYVKGRLHAPKGRDFDEAVEYWKTLKTDDGATFDTV VALRAEEIAPQVTWGTNPGQVISVTDIIPDPASFSDPVERASAEKALAYMGLQPGVPL TDVAIDKVFIGSCTNSRIEDLRAAAEVAKGRKVAPGVQALVVPGSGPVKAQAEAEGLD KIFIEAGFEWRLPGCSMCLAMNNDRLNPGERCASTSNRNFEGRQGRGGRTHLVSPAMA AAAAVTGHFADIRSIK" misc_feature complement(129676..131073) /gene="leuC" /locus_tag="STM0111" /note="3-isopropylmalate dehydratase large subunit; Region: PRK05478" /db_xref="CDD:235490" misc_feature complement(order(129769..129771,129784..129786, 129841..129843,130687..130692,130966..130968, 130975..130977)) /gene="leuC" /locus_tag="STM0111" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153133" misc_feature complement(order(129787..129789,129841..129846, 129853..129855,130033..130035,130684..130686)) /gene="leuC" /locus_tag="STM0111" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153133" gene complement(131076..132181) /gene="leuB" /locus_tag="STM0112" /db_xref="GeneID:1251630" CDS complement(131076..132167) /gene="leuB" /locus_tag="STM0112" /EC_number="1.1.1.85" /note="3-isopropylmalate dehydrogenase. (SW:LEU3_SALTY)" /codon_start=1 /transl_table=11 /product="3-isopropylmalate dehydrogenase" /protein_id="NP_459117.1" /db_xref="GeneID:1251630" /translation="MSKNYHIAVLPGDGIGPEVMAQALKVMDAVRSRFDMRITTSHYD VGGIAIDNHGHPLPKATVEGCEQADAILFGSVGGPKWENLPPESQPERGALLPLRKHF KLFSNLRPAKLYQGLEAFCPLRADIAANGFDILCVRELTGGIYFGQPKGREGSGQYEK AFDTEVYHRFEIERIARIAFESARKRRRKVTSIDKANVLQSSILWREIVNDVAKTYPD VELAHMYIDNATMQLIKDPSQFDVLLCSNLFGDILSDECAMITGSMGMLPSASLNEQG FGLYEPAGGSAPDIAGKNIANPIAQILSLALLLRYSLDANDAATAIEQAINRALEEGV RTGDLARGAAAVSTDEMGDIIARYVAEGV" misc_feature complement(131082..132161) /gene="leuB" /locus_tag="STM0112" /note="3-isopropylmalate dehydrogenase; Provisional; Region: PRK00772" /db_xref="CDD:234832" regulatory complement(131081..131086) /regulatory_class="ribosome_binding_site" /gene="leuB" /locus_tag="STM0112" /note="putative RBS for leuC; RegulonDB:STMS1H000491" gene complement(132167..133758) /gene="leuA" /locus_tag="STM0113" /db_xref="GeneID:1251631" CDS complement(132167..133738) /gene="leuA" /locus_tag="STM0113" /EC_number="2.3.3.13" /note="similar to E. coli 2-isopropylmalate synthase (AAC73185.1); Blastp hit to AAC73185.1 (523 aa), 92% identity in aa 1 - 523" /codon_start=1 /transl_table=11 /product="2-isopropylmalate synthase" /protein_id="NP_459118.1" /db_xref="GeneID:1251631" /translation="MSQQVIIFDTTLRDGEQALQASLSAKEKLQIALALERMGVDVME VGFPVSSPGDFESVQTIARTIKNSRVCALARCVEKDIDVAAQALKVADAFRIHTFIAT SPMHIATKLRSTLDEVIERAVYMVKRARNYTDDVEFSCEDAGRTPVDDLARVVEAAIN AGARTINIPDTVGYTMPFEFAGIISGLYERVPNIDKAIISVHTHDDLGIAVGNSLAAV HAGARQVEGAMNGIGERAGNCALEEVIMAIKVRKDIMNVHTNINHHEIWRTSQTVSQI CNMPIPANKAIVGSGAFAHSSGIHQDGVLKNRENYEIMTPESIGLNQIQLNLTSRSGR AAVKHRMEEMGYKDTDYNMDHLYDAFLKLADKKGQVFDYDLEALAFINKQQEEPEHFR LDYFSVQSGSSDIATASVKLACGEEIKAEAANGNGPVDAIYQAINRITGYDVELVKYD LNAKGQGKDALGQVDIVVNHHGRRFHGVGLATDIVESSAKAMVHVLNNIWRAAEVEKE LQRKAQNKENNKETV" misc_feature complement(132203..133738) /gene="leuA" /locus_tag="STM0113" /note="2-isopropylmalate synthase; Validated; Region: PRK00915" /db_xref="CDD:234864" misc_feature complement(order(133127..133129,133133..133135, 133226..133228,133232..133234,133316..133318, 133322..133324,133448..133450,133514..133516, 133607..133609,133688..133690,133697..133702)) /gene="leuA" /locus_tag="STM0113" /note="active site" /db_xref="CDD:163678" misc_feature complement(order(133607..133609,133697..133702)) /gene="leuA" /locus_tag="STM0113" /note="catalytic residues [active]" /db_xref="CDD:163678" misc_feature complement(order(133127..133129,133133..133135)) /gene="leuA" /locus_tag="STM0113" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:163678" regulatory complement(132176..132181) /regulatory_class="ribosome_binding_site" /gene="leuB" /locus_tag="STM0112" /note="putative RBS for leuB; RegulonDB:STMS1H000492" regulatory complement(133753..133758) /regulatory_class="ribosome_binding_site" /gene="leuA" /locus_tag="STM0113" /note="putative RBS for leuA; RegulonDB:STMS1H000493" gene complement(133826..134057) /gene="leuL" /locus_tag="STM0114" /db_xref="GeneID:1251632" CDS complement(133826..133912) /gene="leuL" /locus_tag="STM0114" /note="leu operon leader peptide. (SW:LPL_SALTY)" /codon_start=1 /transl_table=11 /product="leu operon leader peptide" /protein_id="NP_459119.1" /db_xref="GeneID:1251632" /translation="MSHIVRFTGLLLLNAFIVRGRPVGGIQH" misc_feature complement(133829..133912) /gene="leuL" /locus_tag="STM0114" /note="leu operon leader peptide; Provisional; Region: PRK14744" /db_xref="CDD:173205" regulatory complement(133921..133926) /regulatory_class="ribosome_binding_site" /gene="leuL" /locus_tag="STM0114" /note="putative RBS for leuL; RegulonDB:STMS1H000494" regulatory complement(134030..134038) /regulatory_class="minus_10_signal" /gene="leuL" /locus_tag="STM0114" /note="putative -10_signal for leuL; RegulonDB:STMLTH004472" regulatory complement(134049..134057) /regulatory_class="minus_35_signal" /gene="leuL" /locus_tag="STM0114" /note="putative -35_signal for leuL; RegulonDB:STMLTH004472" gene 134557..135513 /gene="leuO" /locus_tag="STM0115" /db_xref="GeneID:1251633" regulatory 134557..134562 /regulatory_class="ribosome_binding_site" /gene="leuO" /locus_tag="STM0115" /note="putative RBS for leuO; RegulonDB:STMS1H000495" CDS 134569..135513 /gene="leuO" /locus_tag="STM0115" /note="probable activator protein in leuabcd operon. (SW:LEUO_SALTY)" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459120.1" /db_xref="GeneID:1251633" /translation="MPEVKTEKPHLLDMGKPQLRMVDLNLLTVFDAVMQEQNITRAAH TLGMSQPAVSNAVARLKVMFNDELFVRYGRGIQPTARAFQLFGSVRQALQLVQNELPG SGFEPTSSERVFNLCVCSPLDNILTSQIYNRVEKIAPNIHVVFKASLNQNTEHQLRYQ ETEFVISYEEFRRPEFTSVPLFKDEMVLVASRKHPRISGPLLEGDVYNEQHAVVSLDR YASFSQPWYDTPDKQSSVAYQGMALISVLNVVSQTHLVAIAPRWLAEEFAESLDLQIL PLPLKLNSRTCYLSWHEAAGRDKGHQWMEDLLVSVCKR" misc_feature 134569..135510 /gene="leuO" /locus_tag="STM0115" /note="leucine transcriptional activator; Reviewed; Region: leuO; PRK09508" /db_xref="CDD:181918" protein_bind 135700..135712 /note="putative binding site for Lrp, RegulonDB: STMS1H000262" /bound_moiety="Lrp" protein_bind 135720..135732 /note="putative binding site for Lrp, RegulonDB: STMS1H000266" /bound_moiety="Lrp" gene 135770..137559 /gene="ilvI" /locus_tag="STM0116" /db_xref="GeneID:1251634" regulatory 135770..135778 /regulatory_class="minus_35_signal" /gene="ilvI" /locus_tag="STM0116" /note="putative -35_signal for ilvI; RegulonDB:STMLTH004475" protein_bind 135773..135795 /gene="ilvI" /locus_tag="STM0116" /note="putative binding site for Lrp, RegulonDB: STMS1H000252" /bound_moiety="Lrp" regulatory 135797..135805 /regulatory_class="minus_10_signal" /gene="ilvI" /locus_tag="STM0116" /note="putative -10_signal for ilvI; RegulonDB:STMLTH004475" protein_bind 135836..135850 /gene="ilvI" /locus_tag="STM0116" /note="putative binding site for Lrp, RegulonDB: STMS1H000253" /bound_moiety="Lrp" regulatory 135884..135889 /regulatory_class="ribosome_binding_site" /gene="ilvI" /locus_tag="STM0116" /note="putative RBS for ilvI; RegulonDB:STMS1H000496" CDS 135898..137559 /gene="ilvI" /locus_tag="STM0116" /EC_number="4.1.3.-" /note="acetolactate synthase isozyme III large subunit. (SW:ILVI_SALTY)" /codon_start=1 /transl_table=11 /product="valine sensitive acetolactate synthase III, large subunit" /protein_id="NP_459121.1" /db_xref="GeneID:1251634" /translation="MFGYPGGAVLDIYDALHTVGGIDHVLVRHEQAAVHMADGLARAT GDVGVVLVTSGPGATNAITGIATAYMDSIPLVILSGQVATSLIGYDAFQECDMVGISR PVVKHSFLVKQTEDIPLVLKKAFWLAASGRPGPVVVDLPKDILNPAKKMPYAWPETVS MRSYNPTTSGHKGQIKRALQTLASAKKPVVYVGGGAISAACYAPLRHIIETFNLPVVS SLMGLGAFPATHRQSLGMLGMHGTYEANMTMHNADVIFAVGVRFDDRTTNNLAKYCPN ATVLHIDIDPTSISKTVNADIPVVGDARLVLEQMLELLAQDAPSQPQDDIRDWWQQIE SWRARQCLKYDAESESIKPQAVIETLWRLTKGDAYVTSDVGQHQMFAALYYPFDKPRR WINSGGLGTMGFGLPAALGVKMALPKEMVVCVTGDGSIQMNIQELSTALQYELPVLVL NLNNRYLGMVKQWQDMIYSGRHSQSYMQSLPDFVRLAEAYGHVGLQINRPDELESKLS EALEHVRNNRLVFVDVTVDGSEHVYPMQIRGGGMDEMWLSKTERT" misc_feature 135898..137556 /gene="ilvI" /locus_tag="STM0116" /note="acetolactate synthase 3 large subunit; Region: PRK07979" /db_xref="CDD:181185" protein_bind 135926..135938 /gene="ilvI" /locus_tag="STM0116" /note="putative binding site for Lrp, RegulonDB: STMS1H000264" /bound_moiety="Lrp" protein_bind 135928..135942 /gene="ilvI" /locus_tag="STM0116" /note="putative binding site for Lrp, RegulonDB: STMS1H000257" /bound_moiety="Lrp" gene 137550..138053 /gene="ilvH" /locus_tag="STM0117" /db_xref="GeneID:1251635" regulatory 137550..137555 /regulatory_class="ribosome_binding_site" /gene="ilvH" /locus_tag="STM0117" /note="putative RBS for ilvH; RegulonDB:STMS1H000497" CDS 137562..138053 /gene="ilvH" /locus_tag="STM0117" /EC_number="4.1.3.-" /note="acetolactate synthase isozyme III small subunit. (SW:ILVH_SALTY)" /codon_start=1 /transl_table=11 /product="acetolactate synthase III, small subunit" /protein_id="NP_459122.1" /db_xref="GeneID:1251635" /translation="MRRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLS RMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELGQGAHVEREIMLVKIQASGYGREEVK RNTEIFRGQIIDVTPTLYTVQLAGTSDKLDAFLASLRDVAKIVEVARSGVVGLSRGDK IMR" misc_feature 137562..138047 /gene="ilvH" /locus_tag="STM0117" /note="acetolactate synthase 3 regulatory subunit; Reviewed; Region: ilvH; PRK11895" /db_xref="CDD:183365" gene 138326..139341 /gene="fruR" /locus_tag="STM0118" /db_xref="GeneID:1251636" regulatory 138326..138331 /regulatory_class="ribosome_binding_site" /gene="fruR" /locus_tag="STM0118" /note="putative RBS for fruR; RegulonDB:STMS1H000498" CDS 138337..139341 /gene="fruR" /locus_tag="STM0118" /note="GlaR/LacI family; fructose repressor (catabolite repressor/activator). (SW:FRUR_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional repressor of fru operon and others" /protein_id="NP_459123.1" /db_xref="GeneID:1251636" /translation="MKLDEIARLAGVSRTTASYVINGKAKQYRVSDKTVEKVMAVVRE HNYHPNAVAAGLRAGRTRSIGLVIPDLENTSYTRIANYLERQARQRGYQLLIACSEDQ PDNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRALDREHFTSVV GADQDDAEMLAEELRKFPAETVLYLGALPELSVSFLREQGFRTAWKDDPREVNFLYAN SYEREAAAQLFEKWLETHPMPQALFTTSFALLQGVMDVTLRRDGKLPSDLAIATFGDH ELLDFLQCPVLAVAQRHRDVAERVLEIVLASLDEPRKPKPGLTRIRRNLYRRGILSRS " misc_feature 138337..139320 /gene="fruR" /locus_tag="STM0118" /note="catabolite repressor/activator; Region: PRK11303" /db_xref="CDD:236897" gene 139931..140405 /gene="yabB" /locus_tag="STM0119" /db_xref="GeneID:1251637" regulatory 139931..139936 /regulatory_class="ribosome_binding_site" /gene="yabB" /locus_tag="STM0119" /note="putative RBS for yabB; RegulonDB:STMS1H000499" CDS 139947..140405 /gene="yabB" /locus_tag="STM0119" /note="similar to E. coli orf, hypothetical protein (AAC73192.1); Blastp hit to AAC73192.1 (152 aa), 94% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459124.1" /db_xref="GeneID:1251637" /translation="MFRGATLVNLDSKGRLTVPTRYREQLIESATGQMVCTIDIHHPC LLLYPLPEWEIIEQKLSRLSSMNPVERRVQRLLLGHASECQMDGAGRLLIAPVLRQHA GLTKEVMLVGQFNKFELWDETTWYQQVKEDIDAEQSATETLSERLQDLSL" misc_feature 139947..140399 /gene="yabB" /locus_tag="STM0119" /note="protein domain of unknown function (UPF0040) includes MraZ; Region: MraZ; cl03563" /db_xref="CDD:470838" misc_feature order(140181..140183,140187..140189,140271..140273, 140292..140294,140319..140324,140331..140333) /gene="yabB" /locus_tag="STM0119" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:293784" misc_feature 140205..140219 /gene="yabB" /locus_tag="STM0119" /note="DXXXR [structural motif]; Region: DXXXR" /db_xref="CDD:293784" gene 140388..141348 /gene="yabC" /locus_tag="STM0120" /db_xref="GeneID:1251638" regulatory 140388..140393 /regulatory_class="ribosome_binding_site" /gene="yabB" /locus_tag="STM0119" /note="putative RBS for yabC; RegulonDB:STMS1H000500" CDS 140407..141348 /gene="yabC" /locus_tag="STM0120" /note="similar to E. coli putative apolipoprotein (AAC73193.1); Blastp hit to AAC73193.1 (313 aa), 95% identity in aa 1 - 313" /codon_start=1 /transl_table=11 /product="putative S-adenosyl methionine adenyltransferase" /protein_id="NP_459125.1" /db_xref="GeneID:1251638" /translation="MMENFKHTTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQ LGEEGRLLAIDRDPQAIAVAQTINDPRFSIIHGPFSALADYVAERELTGKIDGILLDL GVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTFGEERF AKRIARAIVERNREQPMTRTKELAEVVAAATPVKDKFKHPATRTFQAVRIWVNSELEE IEQALKSSLSVLAPGGRLSIISFHSLEDRIVKRFMREQSRGPQVPAGLPMTEAQLKKL GGRELRALGKLMPGEKEVAENPRARSSVLRIAERTNA" misc_feature 140407..141339 /gene="yabC" /locus_tag="STM0120" /note="16S rRNA C1402 N4-methylase RsmH [Translation, ribosomal structure and biogenesis]; Region: RmsH; COG0275" /db_xref="CDD:440044" gene 141333..141710 /gene="ftsL" /locus_tag="STM0121" /db_xref="GeneID:1251639" regulatory 141333..141338 /regulatory_class="ribosome_binding_site" /gene="ftsL" /locus_tag="STM0121" /note="putative RBS for ftsL; RegulonDB:STMS1H000501" CDS 141345..141710 /gene="ftsL" /locus_tag="STM0121" /note="ingrowth of wall at septum; similar to E. coli cell division protein; ingrowth of wall at septum (AAC73194.1); Blastp hit to AAC73194.1 (121 aa), 98% identity in aa 1 - 121" /codon_start=1 /transl_table=11 /product="cell division protein" /protein_id="NP_459126.1" /db_xref="GeneID:1251639" /translation="MISRVTEALSKVKGSIGSNERHALPGVIGDDLLRFGKLPLCLFI CIILTAVTVVTTAHHTRLLTAQREQLVLERDALDIEWRNLILEENALGDHSRVERIAT EKLQMQHVDPSQENIVVQK" misc_feature 141393..141707 /gene="ftsL" /locus_tag="STM0121" /note="cell division protein FtsL; Provisional; Region: PRK10772" /db_xref="CDD:182717" gene 141709..143492 /gene="ftsI" /locus_tag="STM0122" /db_xref="GeneID:1251640" regulatory 141709..141714 /regulatory_class="ribosome_binding_site" /gene="ftsI" /locus_tag="STM0122" /note="putative RBS for ftsI; RegulonDB:STMS1H000502" CDS 141726..143492 /gene="ftsI" /locus_tag="STM0122" /note="penicillin-binding protein 3; similar to E. coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); Blastp hit to AAC73195.1 (588 aa), 96% identity in aa 1 - 588" /codon_start=1 /transl_table=11 /product="division specific transpeptidase" /protein_id="NP_459127.1" /db_xref="GeneID:1251640" /translation="MKAAAKTQKSKRQEEQTNFISWRFALLCGCILLALVFLLGRAAW LQIIAPDMLVRQGDMRSLRVQEVSTSRGMITDRSGRPLAVSVPVKAIWADPKEVHDAG GISVGDRWKALSTALNIPLDQLSARINANPKGRFIYLARQVNPDMADYIKKLKLPGIH LREESRRYYPSGEVTAHLIGFTNVDSQGIEGVEKSFDKWLTGQPGERIVRKDRYGRVI EDISSTDSQAAHNLALSIDERLQALVYRELNNAVAFNKAESGSAVLVDVNTGEVLAMA NSPSYNPNNLAGTPKDAMRNRTITDVFEPGSTVKPMVVMTALQRGIVNENTVLNTVPY RINGHEIKDVARYSELTLTGVLQKSSNVGVSKLALAMPSSALVDTYSRFGLGKATNLG LVGERSGLYPQKQRWSDIERATFSFGYGLMVTPLQLARVYATIGSYGIYRPLSITKVD PPVPGERIFPESTVRTVVHMMESVALPGGGGVKAAIKGYRIAIKTGTAKKVGPDGRYI NKYIAYTAGVAPASQPRFALVVVINDPQAGKYYGGAVSAPVFGAIMGGVLRTMNIEPD ALATGEKNEFVINQGEGTGGRS" misc_feature 141729..143462 /gene="ftsI" /locus_tag="STM0122" /note="peptidoglycan synthase FtsI; Provisional; Region: PRK15105" /db_xref="CDD:185060" gene 143469..144966 /gene="murE" /locus_tag="STM0123" /db_xref="GeneID:1251641" regulatory 143469..143474 /regulatory_class="ribosome_binding_site" /gene="murE" /locus_tag="STM0123" /note="putative RBS for murE; RegulonDB:STMS1H000503" CDS 143479..144966 /gene="murE" /locus_tag="STM0123" /EC_number="6.3.2.13" /note="similar to E. coli meso-diaminopimelate-adding enzyme (AAC73196.1); Blastp hit to AAC73196.1 (495 aa), 91% identity in aa 1 - 495" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase" /protein_id="NP_459128.1" /db_xref="GeneID:1251641" /translation="MADRNLRDLLAPWVAGLPARELREMTLDSRVAAAGDLFVAVVGH QADGRRYIPQAIAQGVAAIIAEAKDEASDGEIREMHGVPVVYLSQLNERLSALAGRFY HEPSENMRLVAVTGTNGKTTTTQLLAQWSQLLGETSAVMGTVGNGLLGKVIPTENTTG SAVDVQHVLASLVAQGATFGAMEVSSHGLVQHRVAALKFAASVFTNLSRDHLDYHGDM AHYEAAKWMLYSTHHHGQAIVNADDEVGRRWLASLPDAVAVSMEGHINPNCHGRWLKA EAVEYHDRGATIRFASSWGEGEIESRLMGAFNVSNLLLALATLLALGYPLTDLLKTAA RLQPVCGRMEVFTAPGKPTVVVDYAHTPDALEKALQAARLHCAGKLWCVFGCGGDRDK GKRPLMGAIAEEFADIVVVTDDNPRTEEPRAIINDILAGMLDAGQVRVMEGRAEAVTN AIMQAKDNDVVLIAGKGHEDYQIVGTQRLDYSDRVTAARLLGVIA" misc_feature 143479..144960 /gene="murE" /locus_tag="STM0123" /note="UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; Provisional; Region: murE; PRK00139" /db_xref="CDD:234660" gene 144949..146321 /gene="murF" /locus_tag="STM0124" /db_xref="GeneID:1251642" regulatory 144949..144954 /regulatory_class="ribosome_binding_site" /gene="murF" /locus_tag="STM0124" /note="putative RBS for murF; RegulonDB:STMS1H000504" CDS 144963..146321 /gene="murF" /locus_tag="STM0124" /note="similar to E. coli D-alanine:D-alanine-adding enzyme (AAC73197.1); Blastp hit to AAC73197.1 (452 aa), 87% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="D-alanine:D-alanine-adding enzyme" /protein_id="NP_459129.1" /db_xref="GeneID:1251642" /translation="MISVTLSKIADVLGAEHRGADLTLDTVITDTRKVTPGCLFVALK GERFDAHDFADKAKANGAGALLVSRPLDIDLPQVIVKDTRQAFGQLAAWVRMQVPARV VALTGSSGKTSVKEMTAAILSQCGNTLYTAGNFNNDIGVPITLLRLNHDYDYAVIELG ANHQGEIAWTVSLTRPEAALVNNLAAAHLEGFGSLAGVAKAKGEIYTGLPENGIAIMN ADNNDWLNWQSIIGDRLVWRFSPNAANSDFTAANIHVTSHGTEFTLQTPMGSIDVLLP LPGRHNIANALAAAALSMAVGATLTAIKAGLAALKAVPGRLFPIQLSENQLVLDDAYN ANVGSMTAAVQVLSEMPGYRVLVVGDMAELGAESEACHLQVGEAAKAAGIDRVLSTGK LSQAISHASGVGEHFADKAALIARLHALLQEQPMMTILVKGSRSAAMEDVVHALQEKG SC" misc_feature 144963..146318 /gene="murF" /locus_tag="STM0124" /note="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; Reviewed; Region: murF; PRK10773" /db_xref="CDD:182718" gene 146301..147397 /gene="mraY" /locus_tag="STM0125" /db_xref="GeneID:1251643" regulatory 146301..146306 /regulatory_class="ribosome_binding_site" /gene="mraY" /locus_tag="STM0125" /note="putative RBS for mraY; RegulonDB:STMS1H000505" CDS 146315..147397 /gene="mraY" /locus_tag="STM0125" /EC_number="2.7.8.13" /note="similar to E. coli phospho-N-acetylmuramoyl-pentapeptide transferase? (AAC73198.1); Blastp hit to AAC73198.1 (360 aa), 97% identity in aa 1 - 360" /codon_start=1 /transl_table=11 /product="phospho-N-acetylmuramoyl-pentapeptide transferase" /protein_id="NP_459130.1" /db_xref="GeneID:1251643" /translation="MLVWLAEHLVKYYSGFNVFSYLTFRAIVSLLTALFISLWMGPRM IARLQKLSFGQVVRNDGPESHFSKRGTPTMGGIMILTSIVISVLLWAYPSNPYVWCVL VVLIGYGIIGFVDDYRKVVRKDTKGLIARWKYFWMSVIALGVAFALYLVGKDTPATQL VVPFFKDVMPQLGLFYILLSYFVIVGTGNAVNLTDGLDGLAIMPTVFVAAGFALVAWA TGNMNFANYLHIPYLRHAGELVIVCTAIVGAGLGFLWFNTYPAQVFMGDVGSLALGGA LGIIAVLLRQEFLLVIMGGVFVVETLSVILQVGSFKLRGQRIFRMAPIHHHYELKGWP EPRVIVRFWIISLMLVLIGLATLKVR" misc_feature 146423..147394 /gene="mraY" /locus_tag="STM0125" /note="phospho-N-acetylmuramoyl-pentapeptide-transferase; Region: mraY; TIGR00445" /db_xref="CDD:161884" misc_feature 146657..146662 /gene="mraY" /locus_tag="STM0125" /note="Mg++ binding site [ion binding]; other site" /db_xref="CDD:133462" misc_feature 147104..147115 /gene="mraY" /locus_tag="STM0125" /note="putative catalytic motif [active]" /db_xref="CDD:133462" misc_feature order(147263..147265,147281..147295) /gene="mraY" /locus_tag="STM0125" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:133462" gene 147386..148716 /gene="murD" /locus_tag="STM0126" /db_xref="GeneID:1251644" regulatory 147386..147391 /regulatory_class="ribosome_binding_site" /gene="mraY" /locus_tag="STM0125" /note="putative RBS for murD; RegulonDB:STMS1H000506" CDS 147400..148716 /gene="murD" /locus_tag="STM0126" /EC_number="6.3.2.9" /note="similar to E. coli UDP-N-acetylmuramoylalanine-D-glutamate ligase (AAC73199.1); Blastp hit to AAC73199.1 (438 aa), 92% identity in aa 1 - 438" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramoylalanine-D-glutamate ligase" /protein_id="NP_459131.1" /db_xref="GeneID:1251644" /translation="MADYQDKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRVTPPGL DKLPQEVERHVGGLNDEWLLAADLIVASPGIALAHPSLSAAASAGVEIVGDIELFCRE AQAPIVAITGSNGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDADRELYVLELS SFQLETTSSLQAAAATVLNVTEDHMDRYPFGLQQYRAAKLRVYEKAKVCVVNADDALT MPVRGADERCVSFGVNMGDYHLNRQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAA LALADAVGLPRASSLKALTTFTGLAHRFQLALEHNGVRWINDSKATNVGSTEAALNGL HVDGTLHLLLGGDGKSADFSPLTRYLTGDRIRLYCFGRDGAQLAALRPEIAQQTETME EAMRLLAPRVQPGDMVLLSPACASLDQFKNFEQRGDVFTRLAKELG" misc_feature 147406..148710 /gene="murD" /locus_tag="STM0126" /note="UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell wall/membrane/envelope biogenesis]; Region: MurD; COG0771" /db_xref="CDD:440534" gene 148702..149960 /gene="ftsW" /locus_tag="STM0127" /db_xref="GeneID:1251645" regulatory 148702..148707 /regulatory_class="ribosome_binding_site" /gene="ftsW" /locus_tag="STM0127" /note="putative RBS for ftsW; RegulonDB:STMS1H000507" CDS 148716..149960 /gene="ftsW" /locus_tag="STM0127" /note="stablilzes FtsZ ring; cytoplasmic membrane required for PBP2 expression; similar to E. coli cell division; membrane protein involved in shape determination (AAC73200.1); Blastp hit to AAC73200.1 (414 aa), 90% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="essential cell division gene" /protein_id="NP_459132.1" /db_xref="GeneID:1251645" /translation="MRLSLPRLRMPRVPGFGLLAWLFAALKGWVMASRDKDADSLIMY DRTLLWLTFGLAAIGFVMVTSASMPVGQRLANDPFLFAKRDALYIFLAFCLAMVTLRL PMTFWQKYSTTMLIASIIMLLIVLVVGSSVNGASRWIALGPLRIQPAEFTKLSLFCYL ANYLVRKVDEVRNNLRGFLKPMGVILVLAVLLLAQPDLGTVVVLFVTTLAMLFLAGAK LWQFIAIIGMGISAVILLILAEPYRIRRVTSFWNPWEDPFGSGYQLTQSLMAFGRGEI WGQGLGNSVQKLEYLPEAHTDFIFAIIGEELGYIGVVLALLMVFFVAFRAMSIGRKAL EIDHRFSGFLACSIGIWFSFQALVNVGAAAGMLPTKGLTLPLISYGGSSLLIMSTAIM FLLRIDYETRLEKAQAFTRGSR" misc_feature 148746..149957 /gene="ftsW" /locus_tag="STM0127" /note="cell division protein FtsW; Provisional; Region: PRK10774" /db_xref="CDD:182719" gene 149947..151024 /gene="murG" /locus_tag="STM0128" /db_xref="GeneID:1251646" regulatory 149947..149952 /regulatory_class="ribosome_binding_site" /gene="murG" /locus_tag="STM0128" /note="putative RBS for murG; RegulonDB:STMS1H000508" CDS 149957..151024 /gene="murG" /locus_tag="STM0128" /EC_number="2.4.1.-" /note="similar to E. coli UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase (AAC73201.1); Blastp hit to AAC73201.1 (355 aa), 92% identity in aa 1 - 354" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine:N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase" /protein_id="NP_459133.1" /db_xref="GeneID:1251646" /translation="MSGQPKRLMVMAGGTGGHVFPGLAVAHHLMAQGWQVRWLGTADR MEADLVPKHGIDIDFIRISGLRGKGVKALLAAPLRIFNAWRQARAIMKRFKPDVVLGM GGYVSGPGGLAAWSLGIPVVLHEQNGIAGLTNQWLAKIATTVMQAFPGAFPNAEVVGN PVRTDVLALPLPQVRLAGRDGPIRVLVVGGSQGARVLNQTMPQVAARLGDTVTIWHQS GKGAQLTVEQAYAGAGQPQHKVTEFIDDMAAAYAWADVVVCRSGALTVSEIAAAGLPA IFVPFQHKDRQQYWNALPLENAGAAKIFEQPQFTVEAVADTLAGWSREALLTMAERAR AVSIPDATERVASEVSRVART" misc_feature 149969..151018 /gene="murG" /locus_tag="STM0128" /note="undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional; Region: murG; PRK00726" /db_xref="CDD:234825" gene 151131..152618 /gene="murC" /locus_tag="STM0129" /db_xref="GeneID:1251647" regulatory 151131..151136 /regulatory_class="ribosome_binding_site" /gene="murC" /locus_tag="STM0129" /note="putative RBS for murC; RegulonDB:STMS1H000509" CDS 151143..152618 /gene="murC" /locus_tag="STM0129" /EC_number="6.3.2.8" /note="similar to E. coli L-alanine adding enzyme, UDP-N-acetyl-muramate:alanine ligase (AAC73202.1); Blastp hit to AAC73202.1 (491 aa), 94% identity in aa 1 - 490" /codon_start=1 /transl_table=11 /product="L-alanine adding enzyme" /protein_id="NP_459134.1" /db_xref="GeneID:1251647" /translation="MNTQQLAKLRSIVPEMRRVRHIHFVGIGGAGMGGIAEVLANEGY QISGSDLAPNPVTQQLTSLGATIFFNHRPENVRDASVVVVSSAISADNPEIVAAHEAR IPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAGLDPTFVNGGLVKAAG VHARLGHSRYLIAEADESDASFLHLQPMVAIVTNIEADHMDTYHGDFENLKQTFINFL HNLPFYGRAVMCVDDPVIRELLPRVGRQTTTYGFSEDADVRVEDYQQIGPQGHFTLLR QGMPDLHVTLNAPGRHNALNAAAAVAVATEEGIADDAILRALESFQGTGRRFDFLGEF PLEPVNGKAGTAMLVDDYGHHPTEVDATIKAARAGWPDKNLVMLFQPHRYTRTRDLYD DFANVLTQVDALLMLDVYPAGEAPIPGADSRSLCRTIRNRGKIDPILVSDPAQVATML APVLTGNDLILVQGAGNVGKIARYLSEIKLKPQIQEEEQHG" misc_feature 151203..152567 /gene="murC" /locus_tag="STM0129" /note="UDP-N-acetylmuramate--L-alanine ligase; Region: murC; TIGR01082" /db_xref="CDD:273433" gene 152595..153531 /gene="ddlB" /locus_tag="STM0130" /db_xref="GeneID:1251648" regulatory 152595..152600 /regulatory_class="ribosome_binding_site" /gene="ddlB" /locus_tag="STM0130" /note="putative RBS for ddlB; RegulonDB:STMS1H000510" CDS 152611..153531 /gene="ddlB" /locus_tag="STM0130" /EC_number="6.3.2.4" /note="affects cell division; similar to E. coli D-alanine-D-alanine ligase B, affects cell division (AAC73203.1); Blastp hit to AAC73203.1 (306 aa), 90% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="D-alanine-D-alanine ligase B" /protein_id="NP_459135.1" /db_xref="GeneID:1251648" /translation="MADKIAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQE VDVAQLKAMGFQKVFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKL LWQGAGLPVAPWVALTRAEFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEE NALQGALSLAFQHDDEILIEKWLCGPEFTVAIVGEEILPSIRIQPAGTFYDYEAKYLS DETQYFCPAGLDASQEAALQSLVLQAWKALGCTGWGRIDVMLDSDGQFYLLEANTSPG MTSHSLVPMAARQAGMSFSQLVVRILELAD" misc_feature 152611..153528 /gene="ddlB" /locus_tag="STM0130" /note="D-alanine--D-alanine ligase; Reviewed; Region: ddl; PRK01372" /db_xref="CDD:234948" gene 153375..154363 /gene="ftsQ" /locus_tag="STM0131" /db_xref="GeneID:1251649" regulatory 153375..153383 /regulatory_class="minus_35_signal" /gene="ddlB" /locus_tag="STM0130" /note="putative -35_signal for ftsQ; RegulonDB:STMLTH004481" regulatory 153401..153409 /regulatory_class="minus_10_signal" /gene="ddlB" /locus_tag="STM0130" /note="putative -10_signal for ftsQ; RegulonDB:STMLTH004481" regulatory 153514..153519 /regulatory_class="ribosome_binding_site" /gene="ddlB" /locus_tag="STM0130" /note="putative RBS for ftsQ; RegulonDB:STMS1H000511" CDS 153533..154363 /gene="ftsQ" /locus_tag="STM0131" /note="ingrowth of wall at septum; similar to E. coli cell division protein; ingrowth of wall at septum (AAC73204.1); Blastp hit to AAC73204.1 (276 aa), 93% identity in aa 1 - 276" /codon_start=1 /transl_table=11 /product="cell division protein" /protein_id="NP_459136.1" /db_xref="GeneID:1251649" /translation="MSQAALNTRNSDEETPSSRRNNGTRLAGILFLLTVLCTVFVSGW VVLGWMEDAQRLPLSKLVLTGERHYTRNDDIRQAILALGAPGTFMTQDVNIIQSQIER LPWIKQASVRKQWPDELKIHLVEYVPIARWNDQHMVDAEGNTFSVPSDRIGKQVLPML YGPEGSASEVLQGYREMGQVLAKDKFTLKEAAMTARRSWQLTLNNGIKLNLGRGDTMK RLARFVELYPVLQQQAQTDGKRISYVDLRYDSGAAVGWAPLPPEESNQQQNQAQAEQQ " misc_feature 153533..154324 /gene="ftsQ" /locus_tag="STM0131" /note="cell division protein FtsQ; Provisional; Region: PRK10775" /db_xref="CDD:182720" gene 154346..155622 /gene="ftsA" /locus_tag="STM0132" /db_xref="GeneID:1251650" regulatory 154346..154351 /regulatory_class="ribosome_binding_site" /gene="ftsQ" /locus_tag="STM0131" /note="putative RBS for ftsA; RegulonDB:STMS1H000513" CDS 154360..155622 /gene="ftsA" /locus_tag="STM0132" /note="septation process protein; complexes with FtsZ; associated with junctions of inner and outer membranes; similar to E. coli ATP-binding cell division protein, septation process, complexes with FtsZ, associated with junctions of inner and outer membranes (AAC73205.1); Blastp hit to AAC73205.1 (420 aa), 99% identity in aa 1 - 420" /codon_start=1 /transl_table=11 /product="ATP-binding cell division protein" /protein_id="NP_459137.1" /db_xref="GeneID:1251650" /translation="MIKATDRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR GMDKGGVNDLESVVKCVQRAIDQAELMADCQISSVYLALSGKHISCQNEIGMVPISEE EVTQEDVENVVHTAKSVRVRDEHRVLHVIPQEYAIDYQEGIKNPVGLSGVRMQAKVHL ITCHNDMAKNIVKAVERCGLKVDQLIFAGLAASYSVLTEDERELGVCVVDIGGGTMDI AVYTGGALRHTKVIPYAGNVVTSDIAYAFGTPPSDAEAIKVRHGCALGSIVGKDESVE VPSVGGRPPRSLQRQTLAEVIEPRYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVL TGGAAQIEGLAACAQRVFHTQVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGKESHLN GEAEVEKRVTASVGSWIKRLNSWLRKEF" misc_feature 154360..155619 /gene="ftsA" /locus_tag="STM0132" /note="cell division protein FtsA; Reviewed; Region: ftsA; PRK09472" /db_xref="CDD:181887" gene 155670..156834 /gene="ftsZ" /locus_tag="STM0133" /db_xref="GeneID:1251651" regulatory 155670..155675 /regulatory_class="ribosome_binding_site" /gene="ftsZ" /locus_tag="STM0133" /note="putative RBS for ftsZ; RegulonDB:STMS1H000514" CDS 155683..156834 /gene="ftsZ" /locus_tag="STM0133" /note="forms circumferential ring in cell division; similar to E. coli cell division; forms circumferential ring; tubulin-like GTP-binding protein and GTPase (AAC73206.1); Blastp hit to AAC73206.1 (383 aa), 98% identity in aa 1 - 383" /codon_start=1 /transl_table=11 /product="tubulin-like GTP-binding protein and GTPase" /protein_id="NP_459138.1" /db_xref="GeneID:1251651" /translation="MFEPMELTNDAVIKVIGVGGGGGNAVEHMVRERIEGVEFFAVNT DAQALRKTAVGQTIQIGSGITKGLGAGANPEVGRNAADEDREALRAALEGADMVFIAA GMGGGTGTGAAPVVAEVAKDLGILTVAVVTKPFNFEGKKRMAFAEQGITELSKHVDSL ITIPNDKLLKVLGRGISLLDAFGAANDVLKGAVQGIAELITRPGLMNVDFADVRTVMS EMGYAMMGSGVASGEDRAEEAAEMAISSPLLEDIDLSGARGVLVNITAGFDLRLDEFE TVGNTIRAFASDNATVVIGTSLDPDMNDELRVTVVATGIGMDKRPEITLVTNKQVQQP VLDRYQQHGMAPLTQEQKTVAKVVNDNTPQAAKEPDYLDIPAFLRKQAD" misc_feature 155752..156819 /gene="ftsZ" /locus_tag="STM0133" /note="Cell division GTPase FtsZ [Cell cycle control, cell division, chromosome partitioning]; Region: FtsZ; COG0206" /db_xref="CDD:439976" gene 156919..157852 /gene="lpxC" /locus_tag="STM0134" /db_xref="GeneID:1251652" regulatory 156919..156924 /regulatory_class="ribosome_binding_site" /gene="lpxC" /locus_tag="STM0134" /note="putative RBS for lpxC; RegulonDB:STMS1H000515" CDS 156935..157852 /gene="lpxC" /locus_tag="STM0134" /EC_number="3.5.1.-" /note="similar to E. coli UDP-3-O-acyl N-acetylglucosamine deacetylase; lipid A biosynthesis (AAC73207.1); Blastp hit to AAC73207.1 (305 aa), 98% identity in aa 1 - 305" /codon_start=1 /transl_table=11 /product="UDP-3-O-acyl N-acetylglucosamine deacetylase" /protein_id="NP_459139.1" /db_xref="GeneID:1251652" /translation="MIKQRTLKRIVQATGVGLHTGKKVTLTLRPAPANTGVIYRRTDL NPPVDFPADAKSVRDTMLCTCLVNEHDVRISTVEHLNAALAGLGIDNIVIEVNAPEIP IMDGSAAPFVYLLLDAGIDELNCAKKFVRIKETVRVEDGDKWAEFRPYNGFTLDFTID FNHPAIDSSSQRYAMNFSADAFMRQISRARTFGFMRDIEYLQSRGLCLGGSFDCAIVV DDYRVLNEDGLRFEDEFVRHKMLDAIGDLFMCGHNIIGAFTAYKSGHALNNKLLQAVL AKQEAWEFVTFQDDAELPLAFKAPSTVLA" misc_feature 156938..157837 /gene="lpxC" /locus_tag="STM0134" /note="UDP-3-0-acyl N-acetylglucosamine deacetylase; Region: lpxC; TIGR00325" /db_xref="CDD:273014" gene 158199..158627 /gene="yacA" /locus_tag="STM0135" /db_xref="GeneID:1251653" CDS 158199..158627 /gene="yacA" /locus_tag="STM0135" /note="similar to E. coli orf, hypothetical protein (AAC73208.1); Blastp hit to AAC73208.1 (195 aa), 69% identity in aa 49 - 195" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459140.3" /db_xref="GeneID:1251653" /translation="MVAASFGLPALSNAAETNTPARTTASTASKVNFSHFALLEASNR RPNFTVDYWHQHAIRTVIRHLSFAMAPQTLPVADAPSPLQAHHIALLNTLSAMLTQEG TPPAIVRRLSLAYFAPQTAFSIPAWISQAQGIRAGPQRLS" misc_feature 158199..158624 /gene="yacA" /locus_tag="STM0135" /note="secA regulator SecM; Region: PRK02943" /db_xref="CDD:235088" gene 158689..161394 /gene="secA" /locus_tag="STM0136" /db_xref="GeneID:1251654" CDS 158689..161394 /gene="secA" /locus_tag="STM0136" /note="similar to E. coli preprotein translocase; secretion protein (AAC73209.1); Blastp hit to AAC73209.1 (901 aa), 95% identity in aa 1 - 900" /codon_start=1 /transl_table=11 /product="preprotein translocase; secretion protein of IISP family" /protein_id="NP_459141.1" /db_xref="GeneID:1251654" /translation="MLIKLLTKVFGSRNDRTLRRMRKAVSLINAMEPEMEKLSDDELK AKTNEFRARIEKGESVESLIPEAFAVVREASKRVFGMRHFDVQLLGGMVLNDRCIAEM RTGEGKTLTATLPAYLNALSGKGVHVVTVNDYLAQRDAENNRPLFEFLGMSVGINLPG MPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDE ARTPLIISGPAEDSSEMYKKVNKIIPHLIRQEKEDSDTFQGEGHFSVDEKARQVNLTE RGLVLIEELLVQEGIMDEGESLYSPGNIMLMHHVTAALRAHALFTRDVDYIVKDGEVI IVDEHTGRTMQGRRWSDGLHQAVEAKEGVEIQNENQTLASITFQNYFRLYEKLAGMTG TADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTANGQ PVLVGTISIEKSEVVSRELTKAGIKHNVLNAKFHANEAGIVAQAGYPAAVTIATNMAG RGTDIMLGGSWQAEVAALEAPTEEQIAQIKADWQVRHDAVLAAGGLHIIGTERHESRR IDNQLRGRSGRQGDPGSSRFYLSMEDALMRIFASDRVSGMMRKLGMKPGEAIEHPWVT KAIANAQRKVESRNFDIRKQLLEYDDVANDQRRAIYTQRNELLDVSDVSDTINSIRED VFKATIDAYIPPQSLEEMWDIPGLQERLKNDFDLEMPIAEWLDKEPELHEETLRERIL AQSIEVYQRKEEVVGAEMMRHFEKGVMLQTLDSLWKEHLAAMDYLRQGIHLRGYAQKD PKQEYKRESFAMFAAMLESLKYEVISTLSKVQVRMPEEVEAMEMQRREEAERLAQMQQ LSHQDDDAAVAADLAAQTGERKIGRNDPCPCGSGKKYKQCHGRLS" misc_feature 158692..161391 /gene="secA" /locus_tag="STM0136" /note="Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking, secretion, and vesicular transport]; Region: SecA; COG0653" /db_xref="CDD:440418" gene 161532..161941 /gene="mutT" /locus_tag="STM0137" /db_xref="GeneID:1251655" regulatory 161532..161537 /regulatory_class="ribosome_binding_site" /gene="mutT" /locus_tag="STM0137" /note="putative RBS for mutT; RegulonDB:STMS1H000516" CDS 161546..161941 /gene="mutT" /locus_tag="STM0137" /EC_number="3.6.1.-" /note="prefers dGTP; similar to E. coli 7,8-dihydro-8-oxoguanine-triphosphatase, prefers dGTP, causes AT-GC transversions (AAC73210.1); Blastp hit to AAC73210.1 (129 aa), 80% identity in aa 1 - 128" /codon_start=1 /transl_table=11 /product="7,8-dihydro-8-oxoguanine-triphosphatase" /protein_id="NP_459142.1" /db_xref="GeneID:1251655" /translation="MKKLQIAVGIIRNPNDEIFITQRAADAHMANKLEFPGGKIEAGE TPEQALIRELQEEVGITPTQVTLFDTLEYQFPDRHITLWFWLVERWEGEPWGKEGQPG RWIAQNALSTDDFPPANEPIIRKLRQFAL" misc_feature 161546..161932 /gene="mutT" /locus_tag="STM0137" /note="8-oxo-dGTP diphosphatase MutT; Region: PRK10776" /db_xref="CDD:182721" gene complement(162263..162465) /gene="yacG" /locus_tag="STM0138" /db_xref="GeneID:1251656" CDS complement(162263..162454) /gene="yacG" /locus_tag="STM0138" /note="similar to E. coli orf, hypothetical protein (AAC73212.1); Blastp hit to AAC73212.1 (65 aa), 87% identity in aa 1 - 62" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459143.1" /db_xref="GeneID:1251656" /translation="MSDVTVVNCPTCGKPVVWGEISPFRPFCSKRCQLIDLGEWAAEE KRIASSGDQSDSDDWSEER" misc_feature complement(<162311..162454) /gene="yacG" /locus_tag="STM0138" /note="DNA gyrase inhibitor YacG; Region: PRK00418" /db_xref="CDD:234754" regulatory complement(162460..162465) /regulatory_class="ribosome_binding_site" /gene="yacG" /locus_tag="STM0138" /note="putative RBS for yacG; RegulonDB:STMS1H000517" gene complement(162464..163221) /gene="yacF" /locus_tag="STM0139" /db_xref="GeneID:1251657" CDS complement(162464..163207) /gene="yacF" /locus_tag="STM0139" /note="similar to E. coli orf, hypothetical protein (AAC73213.1); Blastp hit to AAC73213.1 (247 aa), 89% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459144.1" /db_xref="GeneID:1251657" /translation="MHTQVLFEHPLNEKMRTWLRIEFLIQQLSINLPIADHAGALHFF RNISDLLDVFERGEVRTELLKELERQQRKLQAWVEVPGVDQDRIEALRQQLKSAGSVL ISAPRIGQQLREDRLIALVRQRLSIPGGCCSFDLPTLHIWLHLQQAQRDAQIESWLAS LNPLTQALTLVLDLIRNSAPFRKQTSLNGFYQDNGDDADLLRLMLTLDSQLYPQISGH KSRFAIRFMPLDSENGLVPERLDFELACC" misc_feature complement(162467..163207) /gene="yacF" /locus_tag="STM0139" /note="cell division protein ZapD; Region: PRK05287" /db_xref="CDD:235389" gene complement(163207..163835) /gene="yacE" /locus_tag="STM0140" /db_xref="GeneID:1251658" CDS complement(163207..163827) /gene="yacE" /locus_tag="STM0140" /note="similar to E. coli putative DNA repair protein (AAC73214.1); Blastp hit to AAC73214.1 (206 aa), 88% identity in aa 1 - 206" /codon_start=1 /transl_table=11 /product="putative nucleotide kinase" /protein_id="NP_459145.1" /db_xref="GeneID:1251658" /translation="MRYTVALTGGIGSGKSTVADAFADLGITVIDADIIARQMVEPGQ PALNAIAEHFGSELIAADGTLRRRALRERIFSHPEEKAWLNALLHPLIQQETQRQFQQ ATSPYVLWVVPLLVENRLYQKANRVLVVDVTPETQLIRTMQRDDVTREHVEHILAAQA TREARLAVADDVIDNNGAPDAIASDVARLHASYLKLASQFVSQEKP" misc_feature complement(163249..163821) /gene="yacE" /locus_tag="STM0140" /note="Dephospho-CoA kinase [Coenzyme transport and metabolism]; Region: CoaE; COG0237" /db_xref="CDD:440007" regulatory complement(163216..163221) /regulatory_class="ribosome_binding_site" /gene="yacE" /locus_tag="STM0140" /note="putative RBS for yacF; RegulonDB:STMS1H000518" regulatory complement(163830..163835) /regulatory_class="ribosome_binding_site" /gene="yacE" /locus_tag="STM0140" /note="putative RBS for yacE; RegulonDB:STMS1H000519" gene 164040..165096 /gene="guaC" /locus_tag="STM0141" /db_xref="GeneID:1251659" regulatory 164040..164045 /regulatory_class="ribosome_binding_site" /gene="guaC" /locus_tag="STM0141" /note="putative RBS for guaC; RegulonDB:STMS1H000520" CDS 164053..165096 /gene="guaC" /locus_tag="STM0141" /EC_number="1.7.1.7" /note="similar to E. coli GMP reductase (AAC73215.1); Blastp hit to AAC73215.1 (347 aa), 95% identity in aa 1 - 347" /codon_start=1 /transl_table=11 /product="GMP reductase" /protein_id="NP_459146.1" /db_xref="GeneID:1251659" /translation="MRIEEDLKLGFKDVLIRPKRSTLKSRSDVELERQFTFKHSGQTW SGVPIIAANMDTVGTFEMAQALAGFDILTAVHKHYTVEEWAAFINTASADVLKHVMVS TGTSDADFEKTVQILALNPALNFVCIDVANGYSEHFVQFVAKAREAWPTKTICAGNVV TGEMCEELILSGADIVKVGIGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGMIVS DGGCTMPGDVAKAFGGGADFVMLGGMLAGHEESGGSVVEENGEKFMLFYGMSSESAMN RHVGGVAKYRAAEGKTVKLPLRGPVGNTARDILGGLRSACTYVGASRLKELTKRTTFI RVQEQENRIFNSL" misc_feature 164053..165090 /gene="guaC" /locus_tag="STM0141" /note="guanosine 5'-monophosphate oxidoreductase; Provisional; Region: PRK05096" /db_xref="CDD:235343" gene complement(165127..166342) /gene="hofC" /locus_tag="STM0142" /db_xref="GeneID:1251660" CDS complement(165127..166329) /gene="hofC" /locus_tag="STM0142" /note="similar to E. coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73217.1); Blastp hit to AAC73217.1 (400 aa), 67% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="putative component in type IV pilin biogenesis" /protein_id="NP_459147.1" /db_xref="GeneID:1251660" /translation="MSVKQLWRWQGVNDKGQLEQDVVWADNRLALIITLQHQRIMPLR IKRMGVNAALWKEEQSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAH ELEQGVPFSSALVSWPQVFPPLYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVK KALRYPAIILTMAALVVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGW LILFLTMLVAIAHRRVKQKPSWQAQRQRLLLRLPVMGRLIRGQKLAQIFTVLALTQSA GIPFLQGLESAIDSLGCPYWSQRLTQVHQEIAAGNPVWLALKNTQEFSPLCLQLVRTG EASGSLDIMLHNLARHHSETTLALADNLASLLEPALLIITGLIIGTLVVAMYLPIFHL GDAMSGMG" misc_feature complement(165139..166329) /gene="hofC" /locus_tag="STM0142" /note="protein transport protein HofC; Region: PRK10573" /db_xref="CDD:182559" gene complement(166319..167715) /gene="hofB" /locus_tag="STM0143" /db_xref="GeneID:1251661" CDS complement(166319..167704) /gene="hofB" /locus_tag="STM0143" /note="involved in biogenesis of fimbriae (type IV pilin), protein transport, DNA uptake; similar to E. coli putative integral membrane protein involved in biogenesis of fimbriae, protein transport, DNA uptake (AAC73218.1); Blastp hit to AAC73218.1 (461 aa), 69% identity in aa 1 - 459" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_459148.1" /db_xref="GeneID:1251661" /translation="MKDAQLNTLCQRHQAVLINSASNSITVAVVDAPSHALLDALHFA TQKQIDIVCWTRQQMENHRHKPDQAPSANAAKGGETAAQLLNQTLRSAMAKRASDIHL EPGASRYRIRLRIDGVLHILQDIAKETGLALTARLKVLGNLDIAEHRLPQDGQFTVDL AGDSISFRIATLPCKEGEKVVLRLLHQVEQTLDLDTLGMYGAQLTAFRQALQQPQGLV LVTGPTGSGKTVTLYSALQTRNTPGINLCSVEDPIEIPLDGINQTQIHPRAGLTFQNV LRALLRQDPDIIMVGEIRDGDTAEIAIKAAQTGHLVLSTLHTNSTSETLIRLQQMGVA RWMISSALTLVVAQRLVRKLCPHCKQRLSDPVVLSPNLWPSAIPRWQASGCQHCYHGF YGRTALFEVLTVTPALRQLIASGASAQALEAHLQQTGTGTLFENGCRAVEQGMTSFEE ILCVLGMPHER" misc_feature complement(166328..167704) /gene="hofB" /locus_tag="STM0143" /note="hypothetical protein; Provisional; Region: PRK10436" /db_xref="CDD:236694" regulatory complement(166337..166342) /regulatory_class="ribosome_binding_site" /gene="hofC" /locus_tag="STM0142" /note="putative RBS for hofC; RegulonDB:STMS1H000521" regulatory complement(167710..167715) /regulatory_class="ribosome_binding_site" /gene="hofB" /locus_tag="STM0143" /note="putative RBS for hofB; RegulonDB:STMS1H000522" gene complement(167714..168163) /gene="ppdD" /locus_tag="STM0144" /db_xref="GeneID:1251662" CDS complement(167714..168151) /gene="ppdD" /locus_tag="STM0144" /note="putative major component of type IV pilin; similar to E. coli prelipin peptidase dependent protein (AAC73219.1); Blastp hit to AAC73219.1 (146 aa), 89% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="prelipin peptidase dependent protein" /protein_id="NP_459149.1" /db_xref="GeneID:1251662" /translation="MEKQRGFTLIELMVVIGIIAILSAIGIPAYQNYLRKAALTDMLQ TFVPYRTAVELCALEHGGTSTCDAGVNGIPSPVITRYVSGMSVEKGVITLTGQESLSG LSVIMTPAWDNANGITGWTRNCNIQSDSALQQACEDVFRFDAN" misc_feature complement(167717..168151) /gene="ppdD" /locus_tag="STM0144" /note="putative major pilin subunit; Provisional; Region: PRK10574" /db_xref="CDD:236718" regulatory complement(168158..168163) /regulatory_class="ribosome_binding_site" /gene="ppdD" /locus_tag="STM0144" /note="putative RBS for ppdD; RegulonDB:STMS1H000523" gene complement(168373..169279) /gene="nadC" /locus_tag="STM0145" /db_xref="GeneID:1251663" CDS complement(168373..169266) /gene="nadC" /locus_tag="STM0145" /EC_number="2.4.2.19" /note="nicotinate-nucleotide pyrophosphorylase [carboxylating]. (SW:NADC_SALTY)" /codon_start=1 /transl_table=11 /product="quinolinate phosphoribosyltransferase" /protein_id="NP_459150.1" /db_xref="GeneID:1251663" /translation="MPPRRYNPDDRRDALLERINLDIPAAVAQALREDLGGEVDAGND ITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQLAGDDVRLTWHVDDGDAIHANQ TVFELNGPARVLLTGERTALNFVQTLSGVASEVRRYVGLLAGTQTQLLDTRKTLPGLR TALKYAVLCGGGANHRLGLTDAFLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVEN LDELDDALKAGADIIMLDNFNTDQMREAVKRVNGQARLEVSGNVTAETLREFAETGVD FISVGALTKHVRALDLSMRFC" misc_feature complement(168376..169200) /gene="nadC" /locus_tag="STM0145" /note="Nicotinate-nucleotide pyrophosphorylase [Coenzyme transport and metabolism]; Region: NadC; COG0157" /db_xref="CDD:439927" regulatory complement(169274..169279) /regulatory_class="ribosome_binding_site" /gene="nadC" /locus_tag="STM0145" /note="putative RBS for nadC; RegulonDB:STMS1H000524" gene 169341..169917 /gene="ampD" /locus_tag="STM0146" /db_xref="GeneID:1251664" regulatory 169341..169346 /regulatory_class="ribosome_binding_site" /gene="ampD" /locus_tag="STM0146" /note="putative RBS for ampD; RegulonDB:STMS1H000525" CDS 169354..169917 /gene="ampD" /locus_tag="STM0146" /note="AMPD protein. (SW:AMPD_SALTY)" /codon_start=1 /transl_table=11 /product="N-acetyl-anhydromuramyl-L-alanine amidase" /protein_id="NP_459151.1" /db_xref="GeneID:1251664" /translation="MLPDKGWLVEARRVPSPHYDCRPDDEKPSLLVVHNISLPPGEFG GPWIDALFTGTIDPDAHPFFAEIAHLRVSAHCLIRRDGEIVQYVPFDKRAWHAGVSNY QGRERCNDFSIGIELEGTDTLAYTDAQYQQLAAVTRTLIASYPAIADNMTGHCNITPD RKTDPGPAFDWPRFRALVALSSHKEMT" misc_feature 169354..169902 /gene="ampD" /locus_tag="STM0146" /note="1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD; Region: PRK11789" /db_xref="CDD:236984" misc_feature order(169453..169455,169573..169575,169813..169815, 169837..169839,169843..169845) /gene="ampD" /locus_tag="STM0146" /note="amidase catalytic site [active]" /db_xref="CDD:133475" misc_feature order(169453..169455,169813..169815,169843..169845) /gene="ampD" /locus_tag="STM0146" /note="Zn binding residues [ion binding]; other site" /db_xref="CDD:133475" misc_feature order(169456..169461,169531..169533,169573..169575, 169615..169617,169636..169641,169678..169680, 169813..169815,169825..169827,169837..169845) /gene="ampD" /locus_tag="STM0146" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133475" gene 169903..170768 /gene="ampE" /locus_tag="STM0147" /db_xref="GeneID:1251665" regulatory 169903..169908 /regulatory_class="ribosome_binding_site" /gene="ampD" /locus_tag="STM0146" /note="putative RBS for ampE; RegulonDB:STMS1H000526" CDS 169914..170768 /gene="ampE" /locus_tag="STM0147" /note="similar to E. coli regulates ampC (AAC73222.1); Blastp hit to AAC73222.1 (284 aa), 84% identity in aa 1 - 284" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="NP_459152.1" /db_xref="GeneID:1251665" /translation="MTLFTTLLVLIVERLFKLGEHWQLDHRLEALFRRITHFSMLRTM GMTAIAMVVTFLLLQALKGLLFNVPTLVVWILLGVLCIGAGKVRVHYHAWLKAASRND PHPCEAMASELTLIHGVPPDCNEREFLRELQNALLWINFRFYLAPLFWFIVGGPWGPV TLVGYAFLRAWQTWLARYQTPHQRLQSGIDAILHVLDWIPVRLAGVVYALLGHGEKAL PAWFASLADLHTSQYQVLTRLAQFSLAREPHTDKVETPKAAVSMAKKASFVVVVIIAL LTIYGALV" misc_feature 169914..170765 /gene="ampE" /locus_tag="STM0147" /note="Regulatory signalling modulator protein AmpE; Region: AmpE; pfam17113" /db_xref="CDD:374997" gene complement(170860..171822) /locus_tag="STM0148" /db_xref="GeneID:1251666" CDS complement(170860..171810) /locus_tag="STM0148" /note="hypothetical protein (gi|7688348)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459153.1" /db_xref="GeneID:1251666" /translation="MANWPNPFIEQRADPFILRDGSDYYFIASVPEYDRLEIRRANSL EGLRAADPVVVWRKPESGPMSQLIWAPEMHRINGKWYIYFAATHTQALDKLGMFQHRM FALECADADPLTGKWTEKGQIKTPFDTFALDATTFYHQGKQWYLWAQKAPDIAGNSNI YLAELENPWTIKGEPVRLSKPEYDWECRGFWVNEGPAVVVHGDKLFISYSASATDENY CMGLLWINVNDDPRDPANWHKSPRPVFTTSYENRQYGPGHNSFTQTPEGENVLVYHAR NYTEIEGDPLYDPNRHTRLKRVRWDENGMPDFGVPPADTI" misc_feature complement(170866..171795) /locus_tag="STM0148" /note="Beta-xylosidase, GH43 family [Carbohydrate transport and metabolism]; Region: COG3940" /db_xref="CDD:443140" gene complement(171810..173227) /locus_tag="STM0149" /db_xref="GeneID:1251667" CDS complement(171810..173216) /locus_tag="STM0149" /note="hypothetical protein (gi|7688349)" /codon_start=1 /transl_table=11 /product="putative permease of the Na+:galactoside symporter family" /protein_id="NP_459154.1" /db_xref="GeneID:1251667" /translation="MDKGRLSVREKIGYGMGDAGCNIIFGAIMLFVNYFYTDIFGLAP ALVGVLLLSVRVIDAVTDPVMGALADRTQSKYGRFRPWLLWIAFPYALFSVLMFTTPD WGYNSKVVYAFVTYFLLSVTYTAINIPYCSLGGVITNDPKERVACQAYRFVLVGIATL LLSLTLLPMVDWFGGGDKAKGYQLAMTVLAIIGMGMFLFCFASVRERVRPAVPTHDDM KNDFKDVWKNDQWVRILLLTLCNVCPGFIRMAATMYYVTWVMGQSTHFATLFISLGVV GMMIGSMLAKVLTDRWCKLKVFFWTNIALAIFSCAFYFFDPKATVMIVALYFLLNILH QIPSPLHWSLMADVDDYGEWKTGKRITGISFSGNLFFLKLGLAIAGAMVGFLLSWYGY DASAKAQSASAMNGIMLLFTVIPGVGYLITAGVVRLLKVDRELMKKIQDDLEKRRTNY RELSELQELNAAESVRKA" misc_feature complement(171855..173216) /locus_tag="STM0149" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature complement(order(172089..172091,172098..172103, 172110..172115,172122..172124,172191..172193, 172203..172205,172215..172220,172365..172367, 172377..172379,172467..172469,172476..172484, 172491..172496,172503..172505,172740..172742, 172749..172754,172761..172763,172824..172826, 172833..172841,172845..172850,173031..173033, 173130..173132,173139..173144,173151..173156)) /locus_tag="STM0149" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340890" regulatory complement(171817..171822) /regulatory_class="ribosome_binding_site" /locus_tag="STM0148" /note="putative RBS for STM0148; RegulonDB:STMS1H000527" regulatory complement(173222..173227) /regulatory_class="ribosome_binding_site" /locus_tag="STM0149" /note="putative RBS for STM0149; RegulonDB:STMS1H000528" gene complement(173380..174812) /gene="aroP" /locus_tag="STM0150" /db_xref="GeneID:1251668" CDS complement(173380..174753) /gene="aroP" /locus_tag="STM0150" /note="similar to E. coli aromatic amino acid transport protein (AAC73223.1); Blastp hit to AAC73223.1 (457 aa), 92% identity in aa 1 - 457" /codon_start=1 /transl_table=11 /product="APC family aromatic amino acid transporter" /protein_id="NP_459155.1" /db_xref="GeneID:1251668" /translation="MMDSQQHGEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSA GPGIILGYAIAGFIAFLIMRQLGEMVVEEPVAGSFSHFAYKYWGGFAGFASGWNYWVL YVLVAMAELTAVGKYIQFWYPEIPTWASAAAFFVIINAINLTNVKVFGEMEFWFAIIK VIAVIAMILFGAWLLFSDTAGPQATVRNLWEQGGFLPHGWTGLVMMMAIIMFSFGGLE LVGITAAEADNPEQSIPKATNQVIYRILIFYIGSLAVLLSLLPWTRVTADTSPFVLIF HELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGLAQQGNAPKALLNVDKRGVPV SSILVSAVVTALCVLLNYLAPESAFGLLMALVVSALVINWAMISLAHMMFRRAKQQQG VKTRFPALFYPFGNVLCLLFMAAVLIIMLMTPGMAISVWLIPVWLLILGVGYLCKEKT AKTVKAH" misc_feature complement(173383..174750) /gene="aroP" /locus_tag="STM0150" /note="aromatic amino acid transporter AroP; Region: PRK10238" /db_xref="CDD:182324" regulatory complement(174756..174761) /regulatory_class="ribosome_binding_site" /gene="aroP" /locus_tag="STM0150" /note="putative RBS for aroP; RegulonDB:STMS1H000529" regulatory complement(174788..174796) /regulatory_class="minus_10_signal" /gene="aroP" /locus_tag="STM0150" /note="putative -10_signal for aroP; RegulonDB:STMLTH004492" regulatory complement(174804..174812) /regulatory_class="minus_35_signal" /gene="aroP" /locus_tag="STM0150" /note="putative -35_signal for aroP; RegulonDB:STMLTH004492" protein_bind complement(174816..174838) /note="putative binding site for TyrR, RegulonDB: STMS1H000391" /bound_moiety="TyrR" protein_bind complement(174838..174862) /note="putative binding site for TyrR, RegulonDB: STMS1H000393" /bound_moiety="TyrR" gene 175153..176080 /gene="pdhR" /locus_tag="STM0151" /db_xref="GeneID:1251669" regulatory 175153..175161 /regulatory_class="minus_35_signal" /gene="pdhR" /locus_tag="STM0151" /note="putative -35_signal for pdhR; RegulonDB:STMLTH004493" regulatory 175180..175188 /regulatory_class="minus_10_signal" /gene="pdhR" /locus_tag="STM0151" /note="putative -10_signal for pdhR; RegulonDB:STMLTH004493" protein_bind 175264..175286 /gene="pdhR" /locus_tag="STM0151" /note="putative binding site for PdhR, RegulonDB: STMS1H000337" /bound_moiety="PdhR" regulatory 175307..175312 /regulatory_class="ribosome_binding_site" /gene="pdhR" /locus_tag="STM0151" /note="putative RBS for pdhR; RegulonDB:STMS1H000530" CDS 175316..176080 /gene="pdhR" /locus_tag="STM0151" /note="similar to E. coli transcriptional regulator for pyruvate dehydrogenase complex (AAC73224.1); Blastp hit to AAC73224.1 (254 aa), 96% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="transcriptional repressor for pyruvate dehydrogenase complex (GntR family)" /protein_id="NP_459156.1" /db_xref="GeneID:1251669" /translation="MAYSKIRQPKLSDVIEQQLEFLILEGTLRPGEKLPPERELAKQF DVSRPSLREAIQRLEAKGLLLRRQGGGTFVQSSLWQSFSDPLVELLSDHPESQFDLLE TRHALEGIAAYYAALRSTDEDKDRIRELHHAIELAQESGDLDAESEAVLQYQIAVTEA AHNVVLLHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAR EASHRHLAFIEEIMLDRSREESRRERALRRLEQRKN" misc_feature 175316..176017 /gene="pdhR" /locus_tag="STM0151" /note="pyruvate dehydrogenase complex transcriptional repressor PdhR; Region: pdhR; PRK09464" /db_xref="CDD:181879" gene 176227..178903 /gene="aceE" /locus_tag="STM0152" /db_xref="GeneID:1251670" regulatory 176227..176232 /regulatory_class="ribosome_binding_site" /gene="aceE" /locus_tag="STM0152" /note="putative RBS for aceE; RegulonDB:STMS1H000531" CDS 176240..178903 /gene="aceE" /locus_tag="STM0152" /EC_number="1.2.4.1" /note="similar to E. coli pyruvate dehydrogenase (decarboxylase component) (AAC73225.1); Blastp hit to AAC73225.1 (887 aa), 96% identity in aa 1 - 887" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase, decarboxylase component" /protein_id="NP_459157.1" /db_xref="GeneID:1251670" /translation="MSERFQNDVDPIETRDWLQAIESVIREEGVERAQYLIDQLLSEA RKGGVKVAAGAGASNYINTIAVEDEPEYPGNLELERRIRSAIRWNAIMTVLRASKKDL ELGGHMASFQSSATIYDVCFNHFFRARNEQDGGDLVYFQGHISPGIYARAFLEGRLTQ EQMDNFRQEVHGNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLK DTSKQTVYAFLGDGEMDEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIV NELEGIFAGAGWNVIKVMWGGRWDELLRKDTSGKLIQLMNETVDGDYQTFKSKDGAYV REHFFGKYPETAALVADWTDEQIWALNRGGHDPKKVYAALKKAQETKGKATVILAHTI KGYGMGDTAEGKNIAHQVKKMNMDGVRYVRDRFNVPVADADLEKLPYITFPEGSEEHK YLHERRQALHGYLPSRQPNFTEKLELPQLSDFGALLEEQSKEISTTIAFVRALNVMLK NKSIKDRLVPIIADEARTFGMEGLFRQIGIYSPNGQQYTPQDREQVAYYKEDEKGQIL QEGINELGAGASWLAAATSYSTNDLPMIPFYIYYSMFGFQRIGDLCWQAGDQQARGFL IGGTSGRTTLNGEGLQHEDGHSHIQSLTIPNCISYDPAYAYEVAVIMHDGLERMYGEK QENVYYYITTLNENYHMPAMPAGAEEGIRKGIYKLETLEGSKGKVQLLGSGSILRHVR EAAQILAKDYGVGSDVYSVTSFTELARDGQDCERWNMLHPLETPRVPYIAQVMNDAPA VASTDYMKLFAEQVRTYVPADDYRVLGTDGFGRSDSRENLRHHFEVDASYVVVAALGE LAKRGEIDKKVVADAITKFNIDADKVNPRLA" misc_feature 176240..178900 /gene="aceE" /locus_tag="STM0152" /note="pyruvate dehydrogenase subunit E1; Reviewed; Region: aceE; PRK09405" /db_xref="CDD:236500" gene 178904..180807 /gene="aceF" /locus_tag="STM0153" /db_xref="GeneID:1251671" regulatory 178904..178909 /regulatory_class="ribosome_binding_site" /gene="aceF" /locus_tag="STM0153" /note="putative RBS for aceF; RegulonDB:STMS1H000532" CDS 178918..180807 /gene="aceF" /locus_tag="STM0153" /EC_number="2.3.1.12" /note="dihydrolipoyltransacetylase component; similar to E. coli pyruvate dehydrogenase (dihydrolipoyltransacetylase component) (AAC73226.1); Blastp hit to AAC73226.1 (630 aa), 93% identity in aa 1 - 630" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase" /protein_id="NP_459158.2" /db_xref="GeneID:1251671" /translation="MAIEIKVPDIGTDEVEITEILVKVGDKVEAEQSLITVEGDKASM EVPSPQAGVVKEIKVSVGDKTETGALIMIFDSAEGAADAAPAKAEEKKEAAPAAAPAA AAAKDVHVPDIGSDEVEVTEVMVKVGDTVEAEQSLITVEGDKASMEVPAPFAGTVKEI KVNTGDKVSTGSLIMVFEVAGEAGAAAPAKAEAAPAAAAPAAATGVKDVNVPDIGGDE VEVTEVMVKVGDKVTAEQSLITVEGDKASMEVPAPFAGTVKEIKISTGDKVKTGSLIM VFEVEGAAPAAAPAKQEAAAPAPAAKAEKPAAPAAKAEGKSEFAENDAYVHATPLIRR LAREFGVNLAKVKGTGRKGRILREDVQAYVKDAIKRAEAAPAAAGGGIPGMLPWPKVD FSKFGEVEEVELGRIQKISGANLSRNWVMIPHVTHFDKTDITDLEAFRKQQNAEAEKR KLDVKYTPVVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYINIGVAVDTPNGLVVP VFKDVNKKSVTELSRELTTISKKARDGKLTAGEMQGGCFTISSIGGLGTTHFAPIVNA PEVAILGVSKSAMEPVWNGKEFVPRLMMPISLSFDHRVIDGADGARFITIINNMLSDI RRLVM" misc_feature 178918..180804 /gene="aceF" /locus_tag="STM0153" /note="pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated; Region: aceF; PRK11854" /db_xref="CDD:236999" protein_bind 180798..180814 /note="putative binding site for FIS, RegulonDB: STMS1H000144" /bound_moiety="FIS" gene 180898..182431 /gene="lpdA" /locus_tag="STM0154" /db_xref="GeneID:1251672" regulatory 180898..180906 /regulatory_class="minus_35_signal" /gene="lpdA" /locus_tag="STM0154" /note="putative -35_signal for lpdA; RegulonDB:STMLTH004495" regulatory 180922..180930 /regulatory_class="minus_10_signal" /gene="lpdA" /locus_tag="STM0154" /note="putative -10_signal for lpdA; RegulonDB:STMLTH004495" regulatory 180998..181003 /regulatory_class="ribosome_binding_site" /gene="lpdA" /locus_tag="STM0154" /note="putative RBS for lpdA; RegulonDB:STMS1H000533" CDS 181007..182431 /gene="lpdA" /locus_tag="STM0154" /EC_number="1.8.1.4" /note="component of 2-oxodehydrogenase and pyruvate complexes; L protein of glycine cleavage complex second part; similar to E. coli lipoamide dehydrogenase (NADH); component of 2-oxodehydrogenase and pyruvate complexes; L-protein of glycine cleavage complex (AAC73227.1); Blastp hit to AAC73227.1 (474 aa), 98% identity in aa 1 - 474" /codon_start=1 /transl_table=11 /product="lipoamide dehydrogenase (NADH)" /protein_id="NP_459159.1" /db_xref="GeneID:1251672" /translation="MSTEIKTQVVVLGAGPAGYSAAFRCADLGLETVIVERYNTLGGV CLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKTDIDKIRTWKEKVITQLTGGLA GMAKGRKVKVVNGLGKFTGANTLEVEGENGKTVINFDNAIIAAGSRPIQLPFIPHEDP RVWDSTDALELKEVPKRMLVMGGGIIGLEMGTVYHALGSEIDVVEMFDQVIPAADKDI VKVFTKRISKKFNLMLETKVTAVEAKEDGIYVSMEGKKAPAEAQRYDAVLVAIGRVPN GKNLDAGKAGVEVDDRGFIRVDKQLRTNVPHIFAIGDIVGQPMLAHKGVHEGHVAAEV IAGKKHYFDPKVIPSIAYTEPEVAWVGLTEKEAKEKGISYETATFPWAASGRAIASDC ADGMTKLIFDKESHRVIGGAIVGTNGGELLGEIGLAIEMGCDAEDIALTIHAHPTLHE SVGLAAEVFEGSITDLPNPKAKKK" misc_feature 181016..182389 /gene="lpdA" /locus_tag="STM0154" /note="Dihydrolipoamide dehydrogenase (E3) component of pyruvate/2-oxoglutarate dehydrogenase complex or glutathione oxidoreductase [Energy production and conversion]; Region: Lpd; COG1249" /db_xref="CDD:440861" gene 182714..183004 /locus_tag="STM0155" /db_xref="GeneID:1251673" regulatory 182714..182719 /regulatory_class="ribosome_binding_site" /locus_tag="STM0155" /note="putative RBS for STM0155; RegulonDB:STMS1H000534" CDS 182720..183004 /locus_tag="STM0155" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_459160.1" /db_xref="GeneID:1251673" /translation="MKLFLTTAALTATLISGMAFASDPVIPWATNSGGTESTHIAAMG EDLNAQHQQITHTHEGVWAANSGSIQADEAALTSNKPPVQGHPELMPHQG" gene complement(183042..183840) /locus_tag="STM0156" /db_xref="GeneID:1251674" CDS complement(183042..183833) /locus_tag="STM0156" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459161.1" /db_xref="GeneID:1251674" /translation="MKKVMLSALLLSLPLLGYAQERFPSPEAAASAFAAAVAGKNETQ LTALLGDDWRQFLPPEGADPEAVARFNRDWREGHRIVQKDNTAHLNVGREDWQLPVPM VKETGGWRFDMAAAGNEILTRTIGRNELSTLQAMHAYVDAQQDYYLQNHRWAHRIISS EGQKDGLYWPTKAGDVPSPLGPNFSPAAPDEGYHGYHFRIISDNDGHGAALLAWPMHY GETGVMSFMVNQDDRIYQADLGKETESKVQAITRFAPDAQWQVAE" misc_feature complement(183051..183776) /locus_tag="STM0156" /note="Protein of unknown function (DUF2950); Region: DUF2950; pfam11453" /db_xref="CDD:431889" regulatory complement(183835..183840) /regulatory_class="ribosome_binding_site" /locus_tag="STM0156" /note="putative RBS for STM0156; RegulonDB:STMS1H000535" gene complement(183846..185488) /gene="yacH" /locus_tag="STM0157" /db_xref="GeneID:1251675" CDS complement(183846..185468) /gene="yacH" /locus_tag="STM0157" /note="similar to E. coli putative membrane protein (AAC73228.1); Blastp hit to AAC73228.1 (617 aa), 29% identity in aa 3 - 523" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_459162.2" /db_xref="GeneID:1251675" /translation="MTLPFKPHLIALVCSAGLFAASGVLYVKSRAPEAPAQAAAPASE PTQTAVPAPVAKTTFTTAQIDQWVAPVALYPDALLSQVLMASTYPANVVQAVQWSRDN PTLQGDAAIQAVASQPWDPSVKSLVAFPQLMALMGENPQWVQNLGDAFLAQPQDVMDA VQRLRLLAQQTGSLKSTPQQTVTSVPKSSASTAVTTTTTTSASTPATPSTVIKIEPAN PQVVYVPNYNPATVYGAWPNTAYPPVYLPPPPGQQFADSFVKGFGYSLGVATTYALFS SIDWDDDDHHHHDDDHHDDDYHHGGNGYQHNGDNININVNNFNRISGQNLPGQTMGWQ HNPAWRNGVPYPNNTVAQRFHPTNVSGGLSATQQAPVSRDSQRQAAMTQFQQRSHTAN ASLPAPGTRDAQRKAASQQLNQIAQRNNYRGYDGTQNSSRREAAQQTLNKSTTQQHRS ELKAKAQQHPVSQQQRDTARQRIESSTPQQRQAFRQNMHANVFSGNDSRSPSWQSQQL RGLESRRGSHLNTEQRAAAREHFSEHHEFHRR" misc_feature complement(184635..185291) /gene="yacH" /locus_tag="STM0157" /note="Protein of unknown function (DUF3300); Region: DUF3300; pfam11737" /db_xref="CDD:463336" regulatory complement(185483..185488) /regulatory_class="ribosome_binding_site" /gene="yacH" /locus_tag="STM0157" /note="putative RBS for yacH; RegulonDB:STMS1H000536" gene 185843..188454 /gene="acnB" /locus_tag="STM0158" /db_xref="GeneID:1251676" regulatory 185843..185848 /regulatory_class="ribosome_binding_site" /gene="acnB" /locus_tag="STM0158" /note="putative RBS for acnB; RegulonDB:STMS1H000537" CDS 185857..188454 /gene="acnB" /locus_tag="STM0158" /EC_number="4.2.1.3" /note="similar to E. coli aconitate hydrase B (AAC73229.1); Blastp hit to AAC73229.1 (865 aa), 96% identity in aa 1 - 865" /codon_start=1 /transl_table=11 /product="aconitate hydratase 2" /protein_id="NP_459163.1" /db_xref="GeneID:1251676" /translation="MLEEYRKHVAERAAQGIVPKPLDATQMAALVELLKTPPVGEEEF LLDLLINRVPPGVDEAAYVKAGFLAAVAKGDTTSPLVSPEKAIELLGTMQGGYNIHPL IDALDDAKLAPIAAKALSHTLLMFDNFYDVEEKAKAGNEYAKQVMQSWADAEWFLSRP PLAEKITVTVFKVTGETNTDDLSPAPDAWSRPDIPLHAQAMLKNAREGIEPDQPGVVG PIKQIEALQKKGYPLAYVGDVVGTGSSRKSATNSVLWFMGDDIPNVPNKRGGGLCLGG KIAPIFFNTMEDAGALPIEVDVSNLNMGDVIDVYPYKGEVRNHETGELLATFELKTDV LIDEVRAGGRIPLIIGRGLTTKAREALGLPHSDVFRQAKDVAESSRGFSLAQKMVGRA CGVKGIRPGAYCEPKMTSVGSQDTTGPMTRDELKDLACLGFSADLVMQSFCHTAAYPK PVDVTTHHTLPDFIMNRGGVSLRPGDGVIHSWLNRMLLPDTVGTGGDSHTRFPIGISF PAGSGLVAFAAATGVMPLDMPESVLVRFKGKMQPGITLRDLVHAIPLYAIKQGLLTVE KKGKKNIFSGRILEIEGLPDLKVEQAFELTDASAERSAAGCTIKLNKEPIVEYLTSNI VLLKWMIAEGYGDRRTLERRIQGMEKWLADPQLLEADADAEYAAVIDIDLADIKEPIL CAPNDPDDARLLSDVQGEKIDEVFIGSCMTNIGHFRAAGKLLDNHKGQLPTRLWVAPP TRMDAAQLTEEGYYSVFGKSGARIEIPGCSLCMGNQARVADGATVVSTSTRNFPNRLG TGANVFLASAELAAVAALIGKLPTPEEYQTYVAQVDKTAVDTYRYLNFDQLSQYTEKA DGVIFQTAV" misc_feature 185857..188448 /gene="acnB" /locus_tag="STM0158" /note="Aconitase B [Energy production and conversion]; Region: AcnB; COG1049" /db_xref="CDD:440670" gene complement(188515..189363) /locus_tag="STM0159" /db_xref="GeneID:1251677" CDS complement(188515..189357) /locus_tag="STM0159" /codon_start=1 /transl_table=11 /product="putative restriction endonuclease" /protein_id="NP_459164.1" /db_xref="GeneID:1251677" /translation="MGTLKLIQYPSQLLSLTISDIINKQNLSQLIQKSKKDDSENWEG KDWIIKNTPQQGINWIGEHPNIKAVIIKTKDGSYADDGWKNNEKTIYSYSFKAAKGII NFNDSANRVLINQPISNYPILLFTDSSNKWEFQGCFKIIDILEKAVILEKMISFPSLN DKNSDNDDVILYKNEHTEGKIKYITHMLSERNRKIIDEIKDNSQWVCDICEIKFLDKY GKNYIEAHHKIPIHTFTGEHRILKTDFALLCPNCHKAVHIYLREENLQYEEAKIKIRN ILKR" misc_feature complement(188530..188841) /locus_tag="STM0159" /note="Predicted restriction endonuclease, HNH family [Defense mechanisms]; Region: COG3183" /db_xref="CDD:442416" regulatory complement(189358..189363) /regulatory_class="ribosome_binding_site" /locus_tag="STM0159" /note="putative RBS for STM0159; RegulonDB:STMS1H000538" gene 189591..189965 /gene="yacL" /locus_tag="STM0160" /db_xref="GeneID:1251678" regulatory 189591..189596 /regulatory_class="ribosome_binding_site" /gene="yacL" /locus_tag="STM0160" /note="putative RBS for yacL; RegulonDB:STMS1H000539" CDS 189603..189965 /gene="yacL" /locus_tag="STM0160" /note="similar to E. coli orf, hypothetical protein (AAC73230.1); Blastp hit to AAC73230.1 (136 aa), 85% identity in aa 17 - 135" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459165.1" /db_xref="GeneID:1251678" /translation="MDYEFLRDVTGGVKVRMSMGHEVVGHWFNEEVKDNLSLLDEVEQ AARTVKGSERSWQRAGHEYTIWMDGEEVMIRANQLDFSGDEMEEGMSYYDEESLSLCG MEDFLRVVAAYREFVSKA" misc_feature 189603..189959 /gene="yacL" /locus_tag="STM0160" /note="hypothetical protein; Provisional; Region: PRK05248" /db_xref="CDD:235372" gene 190186..191153 /gene="kdgT" /locus_tag="STM0161" /db_xref="GeneID:1251679" regulatory 190186..190191 /regulatory_class="ribosome_binding_site" /gene="kdgT" /locus_tag="STM0161" /note="putative RBS for kdgT; RegulonDB:STMS1H000540" CDS 190200..191153 /gene="kdgT" /locus_tag="STM0161" /note="similar to E. coli 2-keto-3-deoxy-D-gluconate transport system (AAC76891.1); Blastp hit to AAC76891.1 (330 aa), 45% identity in aa 4 - 324" /codon_start=1 /transl_table=11 /product="2-keto-3-deoxygluconate permease" /protein_id="NP_459166.1" /db_xref="GeneID:1251679" /translation="MNIKKAIERVPGGMMVVPLVIGAVINTFAPQALEIGGFTTALFK NGAAPLIGAFLLCMGAGISVKAAPQALLQGGTITLTKLLVAIGIGLGVEHLFGAEGIF GLSGVAIIAAMSNSNGGLYAALVGEFGNERDVGAISILSLNDGPFFTMIALGAAGMAN IPIMALVAVLVPLVVGMILGNLDPHMRDFLTKGGPLLIPFFAFALGAGINLEMLLQGG LAGILLGVLTTFVGGFFNIRADRLVGGTGIAGAAASSTAGNAVATPLAIAQADPSLAE VAAAAAPLIAASVITTAILTPVLTSWVAKKQARQASLEKNA" misc_feature 190200..191126 /gene="kdgT" /locus_tag="STM0161" /note="2-keto-3-deoxygluconate permease; Provisional; Region: PRK12460" /db_xref="CDD:183538" gene 191145..192421 /locus_tag="STM0162" /db_xref="GeneID:1251680" regulatory 191145..191150 /regulatory_class="ribosome_binding_site" /gene="kdgT" /locus_tag="STM0161" /note="putative RBS for STM0162; RegulonDB:STMS1H000541" CDS 191150..192421 /locus_tag="STM0162" /note="similar to E. coli orf, hypothetical protein (AAC75779.1); Blastp hit to AAC75779.1 (388 aa), 28% identity in aa 2 - 384" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459167.1" /db_xref="GeneID:1251680" /translation="MKMIVIADDFTGSNDTGVQLAKKGARTEVMLSASQKPSRRADVL VINTESRAMPADQAASAVYAALSPWCETSPAPLVYKKIDSTFRGNIGAEVTAAMRASQ RKLAVIAAAIPAAGRTTLEGKCLVNGVPLLETEFASDPKTPIVSSRIAEIVALQSEIP VYEVFLQDVRRGGLSALLTAYAAEGEGIIVVDAVEERDLTLIAQAACEQPSMPLLVGA AGLANALPVELFMQDRQRLPVLVVAGSMSEATRRQVDNALCRGRAEVVDIDAARMVSD SAEQEIASVVEQACALLSQHRHTILRTSRRAEDRQLIDALCEKSAMSRQQLGERLSQR LGVVTLNIIEQARIGGLFLTGGDIATAVAGALGAEGYRIQSEVAPCIPCGTFVNSEID DLPVITKAGGFGSDSTLCDALYYIEEMYCGD" misc_feature 191153..192406 /locus_tag="STM0162" /note="D-threonate/D-erythronate kinase OtnK and related C4-acid sugar kinases, YgbK/DUF1537 family [Carbohydrate transport and metabolism]; Region: OtnK; COG3395" /db_xref="CDD:442622" gene 192403..193394 /locus_tag="STM0163" /db_xref="GeneID:1251681" regulatory 192403..192408 /regulatory_class="ribosome_binding_site" /locus_tag="STM0163" /note="putative RBS for STM0163; RegulonDB:STMS1H000542" CDS 192411..193394 /locus_tag="STM0163" /note="similar to E. coli pyridoxine biosynthesis (AAC73163.1); Blastp hit to AAC73163.1 (329 aa), 37% identity in aa 2 - 324" /codon_start=1 /transl_table=11 /product="pyridoxine phosphate biosynthetic protein" /protein_id="NP_459168.1" /db_xref="GeneID:1251681" /translation="METKTVAITMGDPAGIGPEIIVKALSEDGLNGAPLVVIGCLATL KRLQAKGITPNVELRAIERVAEARFAPGIIHVIDEPLAQPEALEAGKVQAQAGDLAYR CVKRATELALRGDVQAIATAPLNKEALHLAGHNYPGHTELLATLTHSRDYAMVLYTDK LKVIHVSTHIALRKFLDTLSTARVETVIGIADTFLKRVGYVKPRIAVAGVNPHAGENG LFGDEETRILTPAITDARAKGMDVYGPCPPDTVFLQAYEGQYDMVVAMYHDQGHIPLK LLGFYDGVNITAGLPFIRTSADHGTAFDIAWTGKAKSESMAVSIKLAMQLA" misc_feature 192414..193391 /locus_tag="STM0163" /note="D-threonate 4-phosphate dehydrogenase; Region: pdxA; PRK03371" /db_xref="CDD:179572" gene 193399..194171 /locus_tag="STM0164" /db_xref="GeneID:1251682" regulatory 193399..193404 /regulatory_class="ribosome_binding_site" /locus_tag="STM0164" /note="putative RBS for STM0164; RegulonDB:STMS1H000543" CDS 193404..194171 /locus_tag="STM0164" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC75777.1); Blastp hit to AAC75777.1 (265 aa), 34% identity in aa 16 - 265" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459169.1" /db_xref="GeneID:1251682" /translation="MKGQHRLDLIVAYLKNHTLVTVEQLVEAVDASPATIRRDLIKLD EQGVISRSHGGVALRRFEPAQPTTNEKQLRSPAEKRAIARVAASLVNAGDAVVLDAGT TMMELAKCLTHLPLRVITVDLHIALFLAEFRQIEVTIVGGRIDDSSQSCIGEHGRKLL RSVYPNIAFMSCNSWGVKTGVTTPTEDKAGLKQEIIANAQRKVLLADSSKYGAHSLFN VVPLERFNDVITDVNLPPSAQVELKGRAFALTLVQPE" misc_feature 193404..194132 /locus_tag="STM0164" /note="DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]; Region: GlpR; COG1349" /db_xref="CDD:440960" gene complement(194201..195011) /gene="speD" /locus_tag="STM0165" /db_xref="GeneID:1251683" CDS complement(194201..194995) /gene="speD" /locus_tag="STM0165" /EC_number="4.1.1.50" /note="similar to E. coli S-adenosylmethionine decarboxylase (AAC73231.1); Blastp hit to AAC73231.1 (264 aa), 96% identity in aa 1 - 264" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine decarboxylase, proenzyme" /protein_id="NP_459170.1" /db_xref="GeneID:1251683" /translation="MKKLKLHGFNNLTKSLSFCIYDICYAKTAEERDGYIAYIDELYN ANRLTEILSETCSIIGANILNIARQDYEPQGASVTILVSEEPIDPKLIDQTEHPGPLP ETVVAHLDKSHICVHTYPESHPEGGLCTFRADIEVSTCGVISPLKALNYLIHQLESDI VTIDYRVRGFTRDVNGMKHFIDHEINSIQNFMSEDMKSLYDMVDVNVYQENIFHTKML LKEFDLKHYMFHTKPEDLTETERQEITAALWKEMREIYYGRNISAV" misc_feature complement(194204..194995) /gene="speD" /locus_tag="STM0165" /note="adenosylmethionine decarboxylase; Region: PRK05462" /db_xref="CDD:235480" regulatory complement(195006..195011) /regulatory_class="ribosome_binding_site" /gene="speD" /locus_tag="STM0165" /note="putative RBS for speD; RegulonDB:STMS1H000544" gene complement(195016..195889) /gene="speE" /locus_tag="STM0166" /db_xref="GeneID:1251684" CDS complement(195016..195876) /gene="speE" /locus_tag="STM0166" /EC_number="2.5.1.16" /note="similar to E. coli spermidine synthase = putrescine aminopropyltransferase (AAC73232.1); Blastp hit to AAC73232.1 (288 aa), 94% identity in aa 1 - 286" /codon_start=1 /transl_table=11 /product="putrescine aminopropyltransferase" /protein_id="NP_459171.1" /db_xref="GeneID:1251684" /translation="MAENTMWHETLHDQFGQYFAVDNVLYHEKTDHQDLIIFENAAFG RVMALDGVVQTTERDEFIYHEMMTHVPLLAHGHAKHVLIIGGGDGAMLREVTRHKNVE TITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFTLVIDDGVNFVNQTHQTFDVIISDCT DPIGPGESLFTSAFYEGCKRCLNPGGIFVAQNGVCFLQQDEALDSHRKLSHYFSDVGF YQAAIPTYYGGIMTFAWATDNDALRHLSSEIIQARFHAAGLKCRYYNPAIHAAAFALP QYLHDALSAQ" misc_feature complement(195025..195867) /gene="speE" /locus_tag="STM0166" /note="polyamine aminopropyltransferase; Region: PRK00811" /db_xref="CDD:234843" misc_feature complement(order(195403..195405,195454..195462, 195550..195555,195607..195627)) /gene="speE" /locus_tag="STM0166" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" regulatory complement(195884..195889) /regulatory_class="ribosome_binding_site" /gene="speE" /locus_tag="STM0166" /note="putative RBS for speE; RegulonDB:STMS1H000545" gene complement(195983..196342) /gene="yacC" /locus_tag="STM0167" /db_xref="GeneID:1251685" CDS complement(195983..196330) /gene="yacC" /locus_tag="STM0167" /note="similar to E. coli orf, hypothetical protein (AAC73233.1); Blastp hit to AAC73233.1 (156 aa), 95% identity in aa 42 - 156" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459172.1" /db_xref="GeneID:1251685" /translation="MKTFFRPVLFGSLMALCANSYALTESEAEDMADLTAVFVFLKND CGYQNLPNSQIRRALVFFAQQNQWDLSNYDTFDMKSLGEDSYRDLSGIGIPVAKKCKA LARDSLSLLAYVK" misc_feature complement(195986..196330) /gene="yacC" /locus_tag="STM0167" /note="YacC family pilotin-like protein; Region: pilot_rel_YacC; NF037975" /db_xref="CDD:411579" regulatory complement(196337..196342) /regulatory_class="ribosome_binding_site" /gene="yacC" /locus_tag="STM0167" /note="putative RBS for yacC; RegulonDB:STMS1H000546" gene 196520..198142 /gene="cueO" /locus_tag="STM0168" /db_xref="GeneID:1251686" regulatory 196520..196525 /regulatory_class="ribosome_binding_site" /gene="cueO" /locus_tag="STM0168" /note="putative RBS for cueO; RegulonDB:STMS1H000547" CDS 196532..198142 /gene="cueO" /locus_tag="STM0168" /note="similar to E. coli orf, hypothetical protein (AAC73234.1); Blastp hit to AAC73234.1 (516 aa), 80% identity in aa 1 - 516" /codon_start=1 /transl_table=11 /product="putative multicopper oxidase" /protein_id="NP_459173.1" /db_xref="GeneID:1251686" /translation="MLRRDFLKYSVALGVASALPLWSRAAFAAERPALPIPDLLTADA SNRMQLIVKAGQSTFAGKNATTWGYNGNLLGPAVQLHKGKSVTVDIHNQLAEDTTLHW HGLEIPGIVDGGPQGIIPAGGTRTVTFTPEQRAATCWIHPHKHGKTGRQVAMGLAGLV LIEDDEIRKLRLPKQWGIDDVPVIIQDKRFSADGQIDYQLDIMTAAVGWFGDTLLTNG AIYPQHSAPKGWLRLRLLNGCNARSLNIAASDNRPLYVIASDGGLLAEPVKVTELPLL MGERFEVLVDISDGKAFDLVTLPVSQMGMAIAPFDKPHPVMRIQPLRITASGTLPDTL TTMPALPSLEGLTVRNLKLSMDPRLDMMGMQMLMKKYGAQAMSGMDHDSMNAHMQGGN MGHGEMDHGNMDHSGMNHGAMGNMNHGGKFDFHNANFINGQVFDMNKPMFAAQKGRHE RWVISGVGDMMLHPFHIHGTQFRILSENGKAPAAHRTGWKDTVRVEGGISEVLVKFDH DAPKEHAYMAHCHLLEHEDTGMMLGFTV" misc_feature 196532..198139 /gene="cueO" /locus_tag="STM0168" /note="multicopper oxidase; Provisional; Region: PRK10965" /db_xref="CDD:236810" gene complement(198220..200623) /gene="gcd" /locus_tag="STM0169" /db_xref="GeneID:1251687" CDS complement(198220..200610) /gene="gcd" /locus_tag="STM0169" /EC_number="1.1.5.2" /note="similar to E. coli glucose dehydrogenase (AAC73235.1); Blastp hit to AAC73235.1 (796 aa), 92% identity in aa 1 - 796" /codon_start=1 /transl_table=11 /product="glucose dehydrogenase" /protein_id="NP_459174.1" /db_xref="GeneID:1251687" /translation="MAENNARSPRLLVTLTALFAALCGLYLLIGGVWLVAIGGSWYYP IAGLVMLVVAGLLWRSKRAALWLYAALLLATMIWGVWEVGFDFWALTPRSDILVFFGI WLILPFVWHRLVVPSSGAVAALVVALLISGGILTWAGFNDPQEINGTLRADATPAATS SSIADEDWPAYGRNQEGQRYSPLKQITADNVHQLKEAWVFRTGDLKQPNDPGEITNEV TPIKVGDTLYLCTAHQRLFALDAASGKEKWHFDPQLKTDSSFQHVTCRGVSYHEAKAD TASPEVIADCPRRIILPVNDGRLFAVNAETGKLCETFANKGVLNLQTNMPDTTPGLYE PTSPPIITDKTIVIAGSVTDNFSTRETSGVIRGFDVNSGKLMWAFDPGAKDPNAIPAD EHAFTFNSPNSWAPAAYDAKLDLVYLPMGVTTPDIWGGNRTPEQERYASSILALNATT GKLAWSYQTVHHDLWDMDLPAQPTLADITVDGTTVPVIYAPAKTGNIFVLDRRNGELV VPAPEKPVPQGAAKGDYVAKTQPFSDLTFRPKKDLSGADMWGATMFDQLVCRVMFHQL RYEGIFTPPSEQGTLVFPGNLGMFEWGGISVDPDRQVAIANPMALPFVSKLIPRGPGN PMEPPKDAKGTGTEAGIQPQYGVPFGVTLNPFLSPFGLPCKQPAWGYISALDLKTNEI VWKKRIGTPRDSMPFPMPVPVPFNMGMPMLGGPISTAGNVLFIAATADNYLRAYNMSN GEKLWQGRLPAGGQATPMTYEVNGKQYVVVSAGGHGSFGTKMGDYIVAYALPDDAK" misc_feature complement(198235..200514) /gene="gcd" /locus_tag="STM0169" /note="membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; Region: PQQ_membr_DH; TIGR03074" /db_xref="CDD:274418" misc_feature complement(order(198241..198243,198247..198249, 198376..198378,198385..198393,198400..198402, 198406..198408,198559..198561,198568..198576, 198583..198585,198589..198591,199084..199086, 199093..199101,199108..199110,199114..199116, 199246..199248,199255..199263,199270..199272, 199276..199278,199480..199482,199489..199497, 199504..199506,199510..199512,199678..199680, 199687..199695,199702..199704,199708..199710, 199867..199869,199876..199884,199891..199893, 199897..199899,200017..200019,200026..200034)) /gene="gcd" /locus_tag="STM0169" /note="Trp docking motif [polypeptide binding]; other site" /db_xref="CDD:199838" misc_feature complement(order(198475..198477,199132..199134, 199399..199401,199555..199560,199603..199605, 199813..199815,199828..199833,199960..199962)) /gene="gcd" /locus_tag="STM0169" /note="putative active site [active]" /db_xref="CDD:199838" regulatory complement(200618..200623) /regulatory_class="ribosome_binding_site" /gene="gcd" /locus_tag="STM0169" /note="putative RBS for gcd; RegulonDB:STMS1H000548" gene 200804..201352 /gene="hpt" /locus_tag="STM0170" /db_xref="GeneID:1251688" regulatory 200804..200809 /regulatory_class="ribosome_binding_site" /gene="hpt" /locus_tag="STM0170" /note="putative RBS for hpt; RegulonDB:STMS1H000549" CDS 200816..201352 /gene="hpt" /locus_tag="STM0170" /EC_number="2.4.2.8" /note="hypoxanthine phosphoribosyltransferase. (SW:HPRT_SALTY)" /codon_start=1 /transl_table=11 /product="hypoxanthine phosphoribosyltransferase" /protein_id="NP_459175.1" /db_xref="GeneID:1251688" /translation="MKHTVEVMIPEAEIKARIAELGRQITERYKDSGSEMVLVGLLRG SFMFMADLCREVQVPHEVDFMTASSYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDII DSGNTLSKVREILGLREPKSLAICTLLDKPSRREVDVPVEFVGFSIPDEFVVGYGIDY AQRYRHLPYVGKVVLLDE" misc_feature 200816..201349 /gene="hpt" /locus_tag="STM0170" /note="hypoxanthine phosphoribosyltransferase; Provisional; Region: PRK15423" /db_xref="CDD:185321" misc_feature order(200939..200941,200945..200947,201110..201118, 201122..201136,201206..201208) /gene="hpt" /locus_tag="STM0170" /note="active site" /db_xref="CDD:206754" gene complement(201410..202088) /gene="yadF" /locus_tag="STM0171" /db_xref="GeneID:1251689" CDS complement(201410..202072) /gene="yadF" /locus_tag="STM0171" /EC_number="4.2.1.1" /note="similar to E. coli putative carbonic anhdrase (AAC73237.1); Blastp hit to AAC73237.1 (220 aa), 90% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="putative carbonic anhydrase" /protein_id="NP_459176.1" /db_xref="GeneID:1251689" /translation="MKDIDTLISNNALWSKMLVEEDPGFFEKLAQAQKPRFLWIGCSD SRVPAERLTGLEPGELFVHRNVANLVIHTDLNCLSVVQYAVDVLEVEHIIICGHSGCG GIKAAVENPELGLINNWLLHIRDIWLKHSSLLGKMPEEQRLDALYELNVMEQVYNLGH STIMQSAWKRGQNVTIHGWAYSINDGLLRDLDVTATNRETLENGYHKGISALSLKYIP HQ" misc_feature complement(201413..202072) /gene="yadF" /locus_tag="STM0171" /note="carbonic anhydrase; Provisional; Region: PRK10437" /db_xref="CDD:182460" misc_feature complement(order(201530..201532,201770..201772, 201779..201781,201809..201811,201824..201826, 201890..201892,201899..201901,201935..201943, 201947..201949,201968..201970,201974..201976)) /gene="yadF" /locus_tag="STM0171" /note="active site clefts [active]" /db_xref="CDD:238448" misc_feature complement(order(201770..201772,201779..201781, 201941..201943,201947..201949)) /gene="yadF" /locus_tag="STM0171" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:238448" misc_feature complement(order(201509..201511,201515..201517, 201521..201526,201530..201532,201716..201718, 201824..201829,201836..201841,201881..201883, 201887..201889,201893..201901,201914..201916, 201920..201925,201929..201931,201935..201946)) /gene="yadF" /locus_tag="STM0171" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238448" regulatory complement(202083..202088) /regulatory_class="ribosome_binding_site" /gene="yadF" /locus_tag="STM0171" /note="putative RBS for yadF; RegulonDB:STMS1H000550" gene 202173..203107 /gene="yadG" /locus_tag="STM0172" /db_xref="GeneID:1251690" regulatory 202173..202178 /regulatory_class="ribosome_binding_site" /gene="yadG" /locus_tag="STM0172" /note="putative RBS for yadG; RegulonDB:STMS1H000551" CDS 202181..203107 /gene="yadG" /locus_tag="STM0172" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73238.1); Blastp hit to AAC73238.1 (308 aa), 95% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="putative ABC-type multidrug transport system, ATPase component" /protein_id="NP_459177.1" /db_xref="GeneID:1251690" /translation="MTIALELQQLKKTYPGGVQALRGIDLQVEAGDFYALLGPNGAGK STTIGIISSLVNKTSGRVNVFGYDLEKDVVNAKRQLGLVPQEFNFNPFETVQQIVVNQ AGYYGVEHKEAVLRSEKYLKQLDLWEKRHERARMLSGGMKRRLMIARALMHEPKLLIL DEPTAGVDIELRRSMWGFLKDLNAKGTTIILTTHYLEEAEMLCRNIGIIQHGELVENT SMKNLLSKLKSETFILDLAPKSPLPKLTGYQYRLVDTSTLEVEVLREQGVNSVFSQLS EQGVQVLSMRNKANRLEELFVSLVHEKQGDRA" misc_feature 202193..202879 /gene="yadG" /locus_tag="STM0172" /note="ABC-type multidrug transport system, ATPase component [Defense mechanisms]; Region: CcmA; COG1131" /db_xref="CDD:440746" gene 203091..203874 /gene="yadH" /locus_tag="STM0173" /db_xref="GeneID:1251691" regulatory 203091..203096 /regulatory_class="ribosome_binding_site" /gene="yadH" /locus_tag="STM0173" /note="putative RBS for yadH; RegulonDB:STMS1H000552" CDS 203104..203874 /gene="yadH" /locus_tag="STM0173" /note="ABC superfamily (membrane); similar to E. coli orf, hypothetical protein (AAC73239.1); Blastp hit to AAC73239.1 (256 aa), 94% identity in aa 1 - 256" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_459178.1" /db_xref="GeneID:1251691" /translation="MMQLYWVALKSIWAKEIHRFMRIWVQTLVPPVITMTLYFIIFGN LIGSRIGEMHGFSYMQFIVPGLIMMAVITNSYANVASSFFSAKFQRNIEELLVAPVPT HVIIAGFVGGGVARGLCVGILVTAISLFFVPFQVHSWVFVALTLILTAILFSLAGLLN AVFAKTFDDISLIPTFVLTPLTYLGGVFYSLTLLPPFWQGLSHLNPIVYMISGFRYGF LGIHDVPLVTTFGVLVIFIAAFYLLCWSLIQRGRGLRS" misc_feature 203104..203871 /gene="yadH" /locus_tag="STM0173" /note="inner membrane transport permease; Provisional; Region: PRK15066" /db_xref="CDD:237896" gene complement(203991..205077) /gene="stiH" /locus_tag="STM0174" /db_xref="GeneID:1251692" CDS complement(203991..205070) /gene="stiH" /locus_tag="STM0174" /note="lpfd protein precursor (SW:LPFD_SALTY)" /codon_start=1 /transl_table=11 /product="putative fimbriae" /protein_id="NP_459179.1" /db_xref="GeneID:1251692" /translation="MKNLWMLLALSLFSGHALADGTMGNGSGWCQPTSGTHNFFFPLD QTITDTDENQAGKIVKESWSVGGEYSARCDCDNKDYQGVNYFTATTGDLTQKGTYSEA GSNGQQMDFYVLVAGKLEIGTETYIVGNLKQYIPVPFSAISNQDPTAGGCTGADINKM SAGNKGNVRIYITHPLVGEITIPETTIMNLYLSKTPGSSGDNIPPSVPPMAHVTMSGT ITVPQSCSINAGQVIEVRLPDIEGKDIRHLGDSPQNSHVTTQVNFTCSNVADGTNLSM SLNGATDPHNPDYLKTDNENLGIRISDKYDNTIVPGGSAELPIEDYTDGRGSTEFTAA PVNTTGHVPHTGEYQATATLEIQIR" misc_feature complement(203994..205070) /gene="stiH" /locus_tag="STM0174" /note="fimbrial protein; Region: PRK15297" /db_xref="CDD:185197" regulatory complement(205072..205077) /regulatory_class="ribosome_binding_site" /gene="stiH" /locus_tag="STM0174" /note="putative RBS for stiH; RegulonDB:STMS1H000553" gene complement(205079..207631) /gene="stiC" /locus_tag="STM0175" /db_xref="GeneID:1251693" CDS complement(205079..207625) /gene="stiC" /locus_tag="STM0175" /note="similar to E. coli putative outer membrane protein (AAC76178.1); Blastp hit to AAC76178.1 (838 aa), 39% identity in aa 20 - 558, 34% identity in aa 493 - 837" /codon_start=1 /transl_table=11 /product="putative fimbrial usher" /protein_id="NP_459180.1" /db_xref="GeneID:1251693" /translation="MRKRQHRVFYLSRCAVCIALGSTFTHVAWARDYFNPAFIENHGQ ANRTSVDLSTFDNDKSQLPGTYYVTININKTEIGARNVDFQLATLSDGQQALQGCLRL QELKDNGVKTDLFPTLESEKGCVDLSVIPGASQRFDFQQQALSVSIPQLYIANNARGY VPPEKWQEGITALMLNYSFSGYKEYGSSEDSDDAESKYLALQPGFNLGPWRFRNYSNW SSNNGENGSWNSVYNYLQRDIIALKSQFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQP NSQRGYAPTIRGIARSNAQVIVRQNGYIAYQTAVSPGEFEINDMFPTGSNGDYDVTVK EADGSEQHFIVPYSSLPILQRTGRAKYSVTVGKYRDYNNHALDDFGQATLLYGLPWGI TLYGGSQIAGDKYQSVAFGVGQNMQMLGAISLDGIWSHAKFDDGRKEIGQSWHVRYSK GVVSTGTTFSLAGYRYASENYNSLSEVINPDDDFYDNYGKRHNRFEASVNQQISNTLG SLTLSWVKEDYWHSAQQMESLSASYNNSWGPVSYTLSYSYNKNTYQYRSDNDDDDNDD DRYNQNDRLFTLSLHVPFTVFDSRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWS LQQSHSTQDGDSGGVNASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQ PITGAAILIKAPGASGVSVENQTGVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVD IPLNNQTVYPTRNAVVRAAYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASI VGDKGQVFLSGLPEEGLLLVNWGSASCRADYRLDISKNMNGIVMANAVCQ" misc_feature complement(205082..207625) /gene="stiC" /locus_tag="STM0175" /note="fimbrial outer membrane usher protein; Region: PRK15298" /db_xref="CDD:185198" regulatory complement(207626..207631) /regulatory_class="ribosome_binding_site" /gene="stiC" /locus_tag="STM0175" /note="putative RBS for stiC; RegulonDB:STMS1H000554" gene complement(207652..208341) /gene="stiB" /locus_tag="STM0176" /db_xref="GeneID:1251694" CDS complement(207652..208335) /gene="stiB" /locus_tag="STM0176" /note="similar to E. coli periplasmic chaperone, required for type 1 fimbriae (AAC77272.1); Blastp hit to AAC77272.1 (241 aa), 39% identity in aa 20 - 235" /codon_start=1 /transl_table=11 /product="putative fimbrial chaparone" /protein_id="NP_459181.1" /db_xref="GeneID:1251694" /translation="MNSLAKAGLLCCLLCGSLAHAAGINIGTTRVIFHGDAKDASISI SNSDNVPYLIQSWAQSISETGASGDAPFMVTPPLFRLNGGQKNVLRIIRTGGNLPEDR ESLYWLDIKSIPSSNPDNKHNTLMLAVKAEFKLIYRPKALTQKPEEVADRLTWSRQGR TLTVKNPTPYYMNFATLSVGSQKVKAPRYVAPFGNAQYTLPAAASGPIVWSIINDFGG TGPEHKQTP" misc_feature complement(207655..208335) /gene="stiB" /locus_tag="STM0176" /note="fimbrial chaperone protein StiB; Provisional; Region: PRK15299" /db_xref="CDD:185199" regulatory complement(208336..208341) /regulatory_class="ribosome_binding_site" /gene="stiB" /locus_tag="STM0176" /note="putative RBS for stiB; RegulonDB:STMS1H000555" gene complement(208383..208928) /gene="stiA" /locus_tag="STM0177" /db_xref="GeneID:1251695" CDS complement(208383..208922) /gene="stiA" /locus_tag="STM0177" /note="similar to E. coli major type 1 subunit fimbrin (pilin) (AAC77270.1); Blastp hit to AAC77270.1 (182 aa), 37% identity in aa 1 - 181" /codon_start=1 /transl_table=11 /product="putative fimbrial subunit" /protein_id="NP_459182.1" /db_xref="GeneID:1251695" /translation="MKLSLKTLTVALAAITLSPAALADTAKDGTVHITGLIKQNACTV KTDSVEVTLQEEFASLFTAAGQTAGDTDFTIELENCDANVYSSVQARFEGTLDGTDAT ILKNEDDAENIGVQILDKTSTPMTFNDLQAWSAPVNLPTAEGVTELSMPFTARYIATA VPVKSGTVDATATFYLQYN" misc_feature complement(208386..208922) /gene="stiA" /locus_tag="STM0177" /note="fimbrial protein StiA; Provisional; Region: PRK15300" /db_xref="CDD:185200" regulatory complement(208923..208928) /regulatory_class="ribosome_binding_site" /gene="stiA" /locus_tag="STM0177" /note="putative RBS for stiA; RegulonDB:STMS1H000556" gene 209282..209733 /gene="yadI" /locus_tag="STM0178" /db_xref="GeneID:1251696" regulatory 209282..209287 /regulatory_class="ribosome_binding_site" /gene="yadI" /locus_tag="STM0178" /note="putative RBS for yadI; RegulonDB:STMS1H000557" CDS 209293..209733 /gene="yadI" /locus_tag="STM0178" /note="similar to E. coli putative PTS enzyme II B component (AAC73240.1); Blastp hit to AAC73240.1 (146 aa), 76% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="putative PTS enzyme" /protein_id="NP_459183.1" /db_xref="GeneID:1251696" /translation="MLGWVISCHDDRAQEMLEGLEKKYGPLAQCRAVNFWRGLSVNML SRMMCDALHATDSGEGVIFLTDISGAAPYRVASLMSHKHSQCEVISGVSYSLMEEMIT WRESMSSSAFRDQIVALGAPDVTSLWHQQQKNPPFVLLHDSYEF" misc_feature 209302..209679 /gene="yadI" /locus_tag="STM0178" /note="Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]; Region: ManX; COG2893" /db_xref="CDD:442138" gene 209795..211024 /gene="yadE" /locus_tag="STM0179" /db_xref="GeneID:1251697" CDS 209795..211024 /gene="yadE" /locus_tag="STM0179" /note="similar to E. coli orf, hypothetical protein (AAC73241.1); Blastp hit to AAC73241.1 (409 aa), 81% identity in aa 1 - 409" /codon_start=1 /transl_table=11 /product="putative xylanase/chitin deacetylase" /protein_id="NP_459184.1" /db_xref="GeneID:1251697" /translation="MVMRVVLILLFFFAGNVLAALPARYMQTTKDAAIWSQIGDKMVT VGNIRAGQILSVTPVAADYYAFKFGFGVGFIDKGHLESVQGKQKVEDGLGDLNKPLSN QNLVTWKDTPVYNAPDISSAPFGVLVDNLRYPIISKLKGRLHQTWYQIRIGDRLAYVN AMDAQEDNGIPILTYHHILRDEENTRFRHTSTTTSVRAFSNQMTWLRDRGYATLTMYQ LEDYIYNRANFPARAVAITFDDGLKSVSRYAYPVLKQYDMKATAFIISSRIKRHPQKW NPRSLQFMSVSELRKISDVFDFQSHTHFLHRVDGHRRPILYSRSYHNILFDFERSRRA LAQFTPHVFYLSYPFGGYNATAIKAAKDAGFHLAVTTVRGKVKPGDNPMLLKRLYILR TDSLETMSRLISNQPQG" misc_feature 210482..210991 /gene="yadE" /locus_tag="STM0179" /note="Putative catalytic polysaccharide deacetylase domain of uncharacterized protein yadE and similar proteins; Region: CE4_yadE_5s; cd10966" /db_xref="CDD:213024" misc_feature order(210509..210514,210695..210697,210710..210712, 210836..210844) /gene="yadE" /locus_tag="STM0179" /note="putative active site [active]" /db_xref="CDD:213024" gene complement(211031..211426) /gene="panD" /locus_tag="STM0180" /db_xref="GeneID:1251698" CDS complement(211031..211411) /gene="panD" /locus_tag="STM0180" /EC_number="4.1.1.11" /note="similar to E. coli aspartate 1-decarboxylase (AAC73242.1); Blastp hit to AAC73242.1 (126 aa), 96% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="aspartate 1-decarboxylase" /protein_id="NP_459185.1" /db_xref="GeneID:1251698" /translation="MIRTMLQGKLHRVKVTQADLHYEGSCAIDQDFLDASGILENEAI DIWNVTNGKRFSTYAIAAERGSRIISVNGAAAHCAEVGDIVIIASFVTMSDEEARTWR PKVAYFEGDNEMKRTAKAIPVQVA" misc_feature complement(211034..211411) /gene="panD" /locus_tag="STM0180" /note="aspartate alpha-decarboxylase; Provisional; Region: PRK05449" /db_xref="CDD:180090" misc_feature complement(order(211109..211111,211136..211144, 211154..211156,211178..211183,211187..211192, 211238..211252,211256..211258,211265..211267, 211271..211273,211283..211288,211295..211297, 211301..211303,211343..211354,211376..211381, 211385..211387,211391..211405)) /gene="panD" /locus_tag="STM0180" /note="tetramerization interface [polypeptide binding]; other site" /db_xref="CDD:132994" misc_feature complement(order(211238..211240,211337..211342, 211379..211381,211385..211387)) /gene="panD" /locus_tag="STM0180" /note="active site" /db_xref="CDD:132994" regulatory complement(211421..211426) /regulatory_class="ribosome_binding_site" /gene="panD" /locus_tag="STM0180" /note="putative RBS for panD; RegulonDB:STMS1H000558" gene complement(211506..212373) /gene="panC" /locus_tag="STM0181" /db_xref="GeneID:1251699" CDS complement(211506..212360) /gene="panC" /locus_tag="STM0181" /EC_number="6.3.2.1" /note="similar to E. coli pantothenate synthetase (AAC73244.1); Blastp hit to AAC73244.1 (283 aa), 87% identity in aa 1 - 283" /codon_start=1 /transl_table=11 /product="pantothenate synthetase" /protein_id="NP_459186.1" /db_xref="GeneID:1251699" /translation="MLIIETLPLLRQHIRRLRQEGKRVALVPTMGNLHDGHMKLVDEA KARADVVIVSIFVNPMQFDRPDDLVRYPRTLQEDCEKLNKRKVDYVFAPAVEEIYPHG LEGQTYVDVPGLSTMLEGASRPGHFRGVSTIVSKLFNLIQPDIACFGEKDFQQLALIR KMVADMSYDIEIVGVPIIRAKDGLALSSRNAYLTAEQRKIAPGLYNVMNSIAEKLIAG NRELQEIIAIAEQELNEKGFRADDIQIRDADTLLELTETSKRAVILAAAWLGQARLID NQSVTLAQ" misc_feature complement(211518..212360) /gene="panC" /locus_tag="STM0181" /note="Panthothenate synthetase [Coenzyme transport and metabolism]; Region: PanC; COG0414" /db_xref="CDD:440183" regulatory complement(212368..212373) /regulatory_class="ribosome_binding_site" /gene="panC" /locus_tag="STM0181" /note="putative RBS for panC; RegulonDB:STMS1H000559" gene complement(212486..213288) /gene="panB" /locus_tag="STM0182" /db_xref="GeneID:1251700" CDS complement(212486..213277) /gene="panB" /locus_tag="STM0182" /EC_number="2.1.2.11" /note="similar to E. coli 3-methyl-2-oxobutanoate hydroxymethyltransferase (AAC73245.1); Blastp hit to AAC73245.1 (264 aa), 92% identity in aa 1 - 264" /codon_start=1 /transl_table=11 /product="3-methyl-2-oxobutanoate hydroxymethyltransferase" /protein_id="NP_459187.1" /db_xref="GeneID:1251700" /translation="MKPTTISLLQKCKQEKKRFATITAYDYSFAKLFADEGINVMLVG DSLGMTIQGHDSTLPVTVEDIAYHTRAVRRGAPNCLLLSDLPFMAYATPEQACENAAI VMRAGANMVKIEGGAWLVDTVKMLTERAVPVCGHLGLTPQSVNIFGGYKIQGRGDAGQ VLLDDALALEAAGAQLLVLECVPVELAKRVTEALSIPVIGIGAGNVTDGQILVMHDAF GITGGHIPKFAKNFLAEAGDMRAAVQQYMAEVESGVYPGEEHSFH" misc_feature complement(212495..213268) /gene="panB" /locus_tag="STM0182" /note="Ketopantoate hydroxymethyltransferase [Coenzyme transport and metabolism]; Region: PanB; COG0413" /db_xref="CDD:440182" regulatory complement(213283..213288) /regulatory_class="ribosome_binding_site" /gene="panB" /locus_tag="STM0182" /note="putative RBS for panB; RegulonDB:STMS1H000560" gene complement(213398..213888) /gene="folK" /locus_tag="STM0183" /db_xref="GeneID:1251701" CDS complement(213398..213877) /gene="folK" /locus_tag="STM0183" /EC_number="2.7.6.3" /note="similar to E. coli 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase (AAC73253.1); Blastp hit to AAC73253.1 (159 aa), 87% identity in aa 1 - 148" /codon_start=1 /transl_table=11 /product="7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, PPPK" /protein_id="NP_459188.1" /db_xref="GeneID:1251701" /translation="MTIAYIALGSNLASPLEQVNAALKAIADIPDSRIVAVSSFYRTP PLGPQDQPDYLNAAVALDTALAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLF GDEVINTDRLTVPHYDMKNRGFMLWPLFEIAPDLIFPDGISLHQHLTHLGAAKPAHW" misc_feature complement(213401..213877) /gene="folK" /locus_tag="STM0183" /note="2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase; Region: PRK10239" /db_xref="CDD:182325" misc_feature complement(order(213506..213508,213512..213514, 213527..213532,213539..213541,213581..213586, 213590..213592,213599..213601,213608..213610, 213623..213625,213629..213631,213644..213646, 213653..213655,213665..213667,213710..213712, 213716..213718,213740..213742,213746..213751, 213851..213853)) /gene="folK" /locus_tag="STM0183" /note="catalytic center binding site [active]" /db_xref="CDD:238269" misc_feature complement(order(213512..213514,213527..213532, 213539..213541,213581..213586,213599..213601, 213623..213625,213629..213631,213644..213646, 213653..213655,213665..213667)) /gene="folK" /locus_tag="STM0183" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238269" gene complement(213874..215292) /gene="pcnB" /locus_tag="STM0184" /db_xref="GeneID:1251702" CDS complement(213874..215292) /gene="pcnB" /locus_tag="STM0184" /EC_number="2.7.7.19" /note="similar to E. coli poly(A) polymerase I (AAC73254.1); Blastp hit to AAC73254.1 (454 aa), 90% identity in aa 1 - 453" /codon_start=1 /transl_table=11 /product="poly(A) polymerase I" /protein_id="NP_459189.1" /db_xref="GeneID:1251702" /translation="MTLPRCAIFTRVANFCRKVLSREESEAEQAVARPHMTIIPREQH AISRKDISENALKVLYRLNKAGYEAYLVGGGVRDLLLGKKPKDFDVTTNATPDQVRKL FRNCRLVGRRFRLAHVMFGPEIIEVATFRGHHEGSESDRTTSQRGQNGMLLRDNIFGS IEEDAQRRDFTINSLYYSVADFTVRDYVGGMQDLQEGVIRLIGNPETRYREDPVRMLR AVRFAAKLNMHISPETAEPIPRLATLLNDIPPARLFEESLKLLQAGNGYETYQQLREY HLFQPLFPTITRYFTENGDSAMERIIAQVLKNTDNRIRNEMRVNPAFLFAAMFWYPLL EMAQKIAQESGLAYYDAFALAMNDVLDEACRSLAIPKRLTTLTRDIWQLQLRMSRRQG KRAWKLMEHPKFRAAFDLLELRAQVENNTELQRLAQWWAEFQASAPPEQKGMLNELDD DPAPRRRRSRPRKRAPRREGTV" misc_feature complement(213940..215292) /gene="pcnB" /locus_tag="STM0184" /note="poly(A) polymerase I; Provisional; Region: pcnB; PRK11623" /db_xref="CDD:236939" regulatory complement(213883..213888) /regulatory_class="ribosome_binding_site" /gene="folK" /locus_tag="STM0183" /note="putative RBS for folK; RegulonDB:STMS1H000561" gene complement(215433..216374) /gene="yadB" /locus_tag="STM0185" /db_xref="GeneID:1251703" CDS complement(215433..216374) /gene="yadB" /locus_tag="STM0185" /note="similar to E. coli putative tRNA synthetase (AAC73255.1); Blastp hit to AAC73255.1 (308 aa), 79% identity in aa 5 - 307" /codon_start=1 /transl_table=11 /product="putative glutamyl t-RNA synthetase" /protein_id="NP_459190.3" /db_xref="GeneID:1251703" /translation="MTGGSFPALFFIARSMTDSHYIGRFAPSPSGELHFGSLIAALGS YLQARAQRGIWRVRIEDIDPPREVPGAAATILRQLEHYGLHWDGEVLWQSQRHEAYRE ALAWLHEQGLSYYCTCPRSRIQRLGGIYDGHCRTLCHGPENAAVRIKQQHPVMHFHDA LRGDIQADPQLASEDFIIHRRDGLFAYNLAVVVDDHFQGVTEIVRGADLIEPTVRQLS LYKQFGWRAPGYVHLPLALNEQGAKLSKQNHAPALATGDPRPVLVQALRFLGQRDVVA WQEMSVEELLRFAVAHWRLTAVPTSANVNPAFSNASR" misc_feature complement(215451..216329) /gene="yadB" /locus_tag="STM0185" /note="tRNA glutamyl-Q(34) synthetase GluQRS; Region: PRK05710" /db_xref="CDD:235573" misc_feature complement(order(215637..215639,216264..216266, 216273..216275)) /gene="yadB" /locus_tag="STM0185" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:173905" misc_feature complement(216264..216275) /gene="yadB" /locus_tag="STM0185" /note="HIGH motif; other site" /db_xref="CDD:173905" gene complement(216398..216866) /gene="dksA" /locus_tag="STM0186" /db_xref="GeneID:1251704" CDS complement(216398..216853) /gene="dksA" /locus_tag="STM0186" /note="dnaK suppressor protein. (SW:DKSA_SALTY)" /codon_start=1 /transl_table=11 /product="dnaK suppressor protein" /protein_id="NP_459191.1" /db_xref="GeneID:1251704" /translation="MQEGQNRKTSSLSILAIAGVEPYQEKPGEEYMNEAQLSHFKRIL EAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKT LKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG" misc_feature complement(216401..216853) /gene="dksA" /locus_tag="STM0186" /note="RNA polymerase-binding protein DksA; Region: dksA; PRK10778" /db_xref="CDD:182722" regulatory complement(216861..216866) /regulatory_class="ribosome_binding_site" /gene="dksA" /locus_tag="STM0186" /note="putative RBS for dksA; RegulonDB:STMS1H000562" gene complement(217030..217745) /gene="sfsA" /locus_tag="STM0187" /db_xref="GeneID:1251705" CDS complement(217030..217734) /gene="sfsA" /locus_tag="STM0187" /note="similar to E. coli probable regulator for maltose metabolism (AAC73257.1); Blastp hit to AAC73257.1 (234 aa), 82% identity in aa 1 - 234" /codon_start=1 /transl_table=11 /product="regulator for maltose metabolism" /protein_id="NP_459192.1" /db_xref="GeneID:1251705" /translation="MLFSPPLQRATLIQRYKRFLADVITPDGTTLTLHCPNTGAMTGC ATPGDTVWYSTSENTKRKYPHTWELTETQSGAFICVNTLRANQLTKEAIQENRLPALA GYNILKSEVKYGAERSRIDFMLQADFRPDCYIEVKSVTLAEKENGYFPDAITERGQKH LRELMGVAAAGHRAVVVFAVLHSAITRFSPARHIDIKYAQLLSEAQNKGVEVLAYKAE LSAQKMELNEPVPITL" misc_feature complement(217033..217734) /gene="sfsA" /locus_tag="STM0187" /note="DNA-binding protein, stimulates sugar fermentation [Carbohydrate transport and metabolism, Signal transduction mechanisms]; Region: SfsA; COG1489" /db_xref="CDD:441098" regulatory complement(217740..217745) /regulatory_class="ribosome_binding_site" /gene="sfsA" /locus_tag="STM0187" /note="putative RBS for sfsA; RegulonDB:STMS1H000563" gene complement(217751..218281) /gene="ligT" /locus_tag="STM0188" /db_xref="GeneID:1251706" CDS complement(217751..218281) /gene="ligT" /locus_tag="STM0188" /EC_number="6.5.1.-" /note="similar to E. coli orf, hypothetical protein (AAC73258.1); Blastp hit to AAC73258.1 (179 aa), 77% identity in aa 4 - 177" /codon_start=1 /transl_table=11 /product="2'-5' RNA ligase" /protein_id="NP_459193.1" /db_xref="GeneID:1251706" /translation="MSEPKRLFFAIDLPDDARAQIIAWRAAHFASEDGRPVAAANLHL TLAFLGDVSSDKQRALAQLAGRIRQPGFTLHLDDAGQWLRSRVVWLGMRQPPRGLLQL ANMLRAQAARSGCYQSPQPFHPHITLLRDASHTVAIPPPGFCWSFPVTSFALYASSYG QGRTRYAELQRWTLGE" misc_feature complement(217754..218281) /gene="ligT" /locus_tag="STM0188" /note="RNA 2',3'-cyclic phosphodiesterase; Region: PRK15124" /db_xref="CDD:185079" gene 218296..220783 /gene="hrpB" /locus_tag="STM0189" /db_xref="GeneID:1251707" regulatory 218296..218301 /regulatory_class="ribosome_binding_site" /gene="hrpB" /locus_tag="STM0189" /note="putative RBS for hrpB; RegulonDB:STMS1H000564" CDS 218309..220783 /gene="hrpB" /locus_tag="STM0189" /note="similar to E. coli helicase, ATP-dependent (AAC73259.1); Blastp hit to AAC73259.1 (824 aa), 84% identity in aa 1 - 824" /codon_start=1 /transl_table=11 /product="ATP-dependent helicase" /protein_id="NP_459194.1" /db_xref="GeneID:1251707" /translation="MLQCGAKKVNPVEPFVTSLPVAAVLPELLTALKIAPQVLLSAPT GAGKSTWLPLQLLQQGPVAGKILLLEPRRLAARNVAQRLAEALNEKPGETVGYRMRAQ SCVGPRTRLEVVTEGVLTRMIQRDPELRGVGLVILDEFHERSLQADLALALLLDIQQG LRDDLRLLIMSATLDNDRLCQRLPDAPTIVSEGRAFPVERRYQPLAAHLRFDEAVAMA TAELLRNENGSLLLFLPGVGEIQRVHEHLASRVGSDVLLCPLYGALSLEAQRKAIVPA PAGMRKVVLATNIAETSLTIEGIRLVVDSAQERVARFDARTGLTRLVTQRISQASMTQ RAGRAGRLAPGICLHLLAKEQAERAAAQSDPEILHSDLSGLLMEVLQWGCHDPASLFW LDRPPEVNLQAARRLLLMLGALEGERLSARGRKMAAMGNDPRLAAMLVNAGEGDSAAT AAMLAAILEDPPRGGGTDLSVVFSRRQPGWQQRSQQLLKRLQVRNGEPDSALIMPLLA RAFSDRIARRRGQEGRYQLANGMGAMLDADDALGRHEWLIAPLLLQGSASPDARILLA QPLDIASLIQACPDLLRQSDTVEWDEAQGTLKAWRRMRIGQLTVSVQPLAKPSEEELH QAMLNGIRDKGLSVLNWTPEAEQFRLRLHCAAKWLPEYDWPAVDEASLLATLENWLLP HMTGVQSLRGLKSLNVNQALRGLLDYAMLQRLDSELPGHYTVPTGSRITIRYHEDNPP ALAVRMQEMFGEAKTPTIAQGRVPLVLELLSPAQRPLQITRDLSAFWQGAYREVQKEM KGRYPKHVWPDDPANTAPTRRTKKYS" misc_feature 218354..220780 /gene="hrpB" /locus_tag="STM0189" /note="ATP-dependent RNA helicase HrpB; Provisional; Region: PRK11664" /db_xref="CDD:236950" gene 220911..223446 /gene="mrcB" /locus_tag="STM0190" /db_xref="GeneID:1251708" regulatory 220911..220916 /regulatory_class="ribosome_binding_site" /gene="mrcB" /locus_tag="STM0190" /note="putative RBS for mrcB; RegulonDB:STMS1H000565" CDS 220924..223446 /gene="mrcB" /locus_tag="STM0190" /note="similar to E. coli peptidoglycan synthetase; penicillin-binding protein 1B (AAC73260.1); Blastp hit to AAC73260.1 (844 aa), 92% identity in aa 1 - 844; transpeptidase of penicillin-binding protein 1b" /codon_start=1 /transl_table=11 /product="peptidoglycan synthetase" /protein_id="NP_459195.1" /db_xref="GeneID:1251708" /translation="MAGNDREPIGRKGKPSRPVKQKVSRRRQHDDDYDDDYEDEEPMP RKGKGKGRKPRGKRGWLWLLLKLFIVFVVLFAIYGVYLDQKIRSRIDGKVWQLPAAVY GRMVNLEPDMPVSKNEMVKLLEATQYRLVTKMTRPGEFTVQANSIEMIRRPFDFPDSK EGQVRARLTFSDGRLETIVNLDNNRQFGFFRLDPRLITMLSSPNGEQRLFVPRSGFPD LLVDTLLATEDRHFYEHDGISLYSIGRAVLANLTAGRTVQGASTLTQQLVKNLFLSSE RSYWRKANEAYMALIMDARYSKDRILELYMNEVYLGQSGDNEIRGFPLASLYYFGRPV EELSLDQQALLVGMVKGASIYNPWRNPKLALERRNLVLRLLQQQKIIDQELYDMLSAR PLGVQPRGGVISPQPAFMQMVRQELQAKLGDKIKDLSGVKIFTTFDSVAQDAAEKAVV EGIPALKKQRKLSDLETAMVVVDRFSGEVRAMVGGAEPQYAGYNRAMQARRSIGSLAK PATYLTALSQPNLYRLNTWIADAPISLRQPNGQVWSPQNDDRRYSESGKVMLVDALTR SMNVPTVNLGMALGLPAVTDTWTKLGVPKDQLNPVPAMLLGALNLTPIEVAQAFQTIA SGGNRAPLSALRSVIAEDGKVLYQSYPQAERAVPAQAAYLTLWTMQQVVQRGTGRQLG AKYPGLHLAGKTGTTNNNVDTWFAGIDGSQVTITWVGRDNNQPTKLYGASGAMAIYQR YLANQTPTPLVLTPPEDVVDMGVDYDGNFVCSGGMRTLPVWTDDPNTLCQQGEMMQQQ QQPSGNPFDQSSQPQQPAQQQPPKEEKSDGVAGWIKEMFGGN" misc_feature 220924..223437 /gene="mrcB" /locus_tag="STM0190" /note="bifunctional glycosyl transferase/transpeptidase; Reviewed; Region: mrcB; PRK09506" /db_xref="CDD:236544" gene 223726..225928 /gene="fhuA" /locus_tag="STM0191" /db_xref="GeneID:1251709" regulatory 223726..223731 /regulatory_class="ribosome_binding_site" /gene="fhuA" /locus_tag="STM0191" /note="putative RBS for fhuA; RegulonDB:STMS1H000566" CDS 223739..225928 /gene="fhuA" /locus_tag="STM0191" /note="similar to E. coli outer membrane protein receptor for ferrichrome, colicin M, and phages T1, T5, and phi80 (AAC73261.1); Blastp hit to AAC73261.1 (747 aa), 68% identity in aa 1 - 747" /codon_start=1 /transl_table=11 /product="outer membrane protein receptor / transporter for ferrichrome, colicin M, and phages T1, T5, and phi80" /protein_id="NP_459196.1" /db_xref="GeneID:1251709" /translation="MARLKTAQPNSSLRKIAVVVATAVSGMSVYAQAAVQPKEETITV TAAPAAQESAWGPAPTIAAKRSATTTKTDTPIEKTPQSVSVVTNEEMQMHQFQSVKEA LGYTPGVTVSSRGASNTYDFVIIRGFSSVGLSQNNYLDGLKLQGNFYNDAVIDPYMLE RVELMRGPTSVLYGKSNPGGIISMVSKRPTTEPLKEIQFKMGTDNLFQTGFDFSDSLD DNGEFSYRLTGLARSTNEQQKSSESQRYAIAPSFTWRPDEKTNFTFLSYFQNEPETGY YGWLPKEGTVEPLPNGKRLPTDFNEGASNNTYSRNEKMVGYSFEHGFNDTFTVRQNLR FVEMKTAQKSVYGTGIAADGHTLNRGTIVDNERLQNFSVDTQLESKFATGDIDHTLLT GVDFMRMRNDINATFGSAPSIDLYNNYHPEYFAFGGAEPYQMNESKQTGLYVQDQAEW NKWVFTLGGRYDWSKQATTVRQNSTTPTEGYIERNDHQFTWRGGVNYVFDNGISPYFS YSQSFEPSAFDLWSTPRVSYKPSKGEQYEAGVKYVPKDMPVVVTGAVYQLTKTNNLTA DPTNPLAQVPAGEIRARGVELEAKAALTANINMTASYTYTDAEYTKDTNLKGNTPEQV PEHMASLWGDYTFNEGPLSGLTLGTGGRFIGSSYGDPANSFKVGSAAVMDAVVKYDLA RFGMAGSSIAVNVNNLLDREYVASCFQTYGCFWGAERQVVATATFRF" misc_feature 223739..225925 /gene="fhuA" /locus_tag="STM0191" /note="ferrichrome outer membrane transporter; Provisional; Region: PRK10044" /db_xref="CDD:236643" gene 225977..226774 /gene="fhuC" /locus_tag="STM0192" /db_xref="GeneID:1251710" CDS 225977..226774 /gene="fhuC" /locus_tag="STM0192" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of hydroxymate-dependent iron transport (AAC73262.1); Blastp hit to AAC73262.1 (265 aa), 92% identity in aa 1 - 265" /codon_start=1 /transl_table=11 /product="hydroxymate-dependent iron transport" /protein_id="NP_459197.1" /db_xref="GeneID:1251710" /translation="MQENHIHSDTTFALRSVAFRVPGRTLLHPLSLTFPAGRVTGLIG HNGSGKSTLLKMLGRHQPPSEGDILLDNQPLASWSSKAFARKVAYLPQQLPQAEGMTV RELVAIGRYPWHGALGRFGVADREKVDEAITLVGLKPLAHRLVDSLSGGERQRAWIAM LVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQQRGLTVVAVLHDINMAARYCDYL VALRGGEMIAQGTPAELMRSDTLEQIYGIPMGILPHPAGAAPVSFVY" misc_feature 225977..226771 /gene="fhuC" /locus_tag="STM0192" /note="Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC; Region: PRK10575" /db_xref="CDD:182561" gene 226774..227664 /gene="fhuD" /locus_tag="STM0193" /db_xref="GeneID:1251711" CDS 226774..227664 /gene="fhuD" /locus_tag="STM0193" /note="ABC superfamily (bind _prot); similar to E. coli hydroxamate-dependent iron uptake, cytoplasmic membrane component (AAC73263.1); Blastp hit to AAC73263.1 (296 aa), 82% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="hydroxamate-dependent iron uptake" /protein_id="NP_459198.1" /db_xref="GeneID:1251711" /translation="MRDLYPLTRRRLLTAMALSPLLWQMNTAQAAAIDPRRIVALEWL PVELLLALGITPYGVADVPNYKLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVW SAGYGPSPEKLARIAPGRGFDFSDGKKPLAVARRSLVELAQTLNLEAAAEKHLAQYDR FIASQKPHFIRRGGRPLLMTTLIDPRHMLVLGPNCLFQEVLDEYGIVNAWQGETNFWG STAVSIDRLAMYKEADVICFDHGNNTDMNALMATPLWQAMPFVRAGRFHRVPAVWFYG ATLSTMHFVRILNNVLGGKA" misc_feature 226783..227658 /gene="fhuD" /locus_tag="STM0193" /note="Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD; Region: PRK10576" /db_xref="CDD:236719" misc_feature order(226975..226977,227023..227028,227089..227091, 227338..227340) /gene="fhuD" /locus_tag="STM0193" /note="siderophore binding site [active]" /db_xref="CDD:238566" gene 227651..229718 /gene="fhuB" /locus_tag="STM0194" /db_xref="GeneID:1251712" regulatory 227651..227656 /regulatory_class="ribosome_binding_site" /gene="fhuD" /locus_tag="STM0193" /note="putative RBS for fhuB; RegulonDB:STMS1H000567" CDS 227661..229718 /gene="fhuB" /locus_tag="STM0194" /note="ABC superfamily (membrane); similar to E. coli hydroxamate-dependent iron uptake, cytoplasmic membrane component (AAC73264.1); Blastp hit to AAC73264.1 (660 aa), 90% identity in aa 9 - 660" /codon_start=1 /transl_table=11 /product="hydroxamate-dependent iron uptake" /protein_id="NP_459199.1" /db_xref="GeneID:1251712" /translation="MSRKREMPDGGAKSVLSDLRFGRFVGRIRRSRHPALLLLALFVA ACWLTWVNFSVALPRSQWQQAIWSPDIDIIEQMIFHYSQLPRLAISLLVGAGLGLVGV LFQQVLRNPLAEPTTLGVATGAQLGITVTTLWAIPGALTTQFAALTGACIVGALVFGV AWGKRLSPVTLILAGLVVSLYCGAINQLLVIFHHDQLQSMFLWSTGTLTQTDWSGVQR LWPQLLGGVMLTLLLLRPMTLMGLDDGVARNLGLALSLARLAALSLAIVLSALLVNAV GIIGFIGLFAPLLAKMLGARRLLARLMLAPLIGALILWLSDQIILWLTRVWMEVSTGS VTALIGAPLLLWLLPRLKSMSAPDMNASDRVAAERRHVLAFAVAGGALLLLATWVALS FGRDAHGWTWASGTLLEELMPWRWPRILAALMAGVMLAVAGCIIQRLTGNPMASPEVL GISSGAAFGVVLMLFLVPGNAFGWLLPAGSLGAAATLLIIMIAAGRGGFSPQRMLLAG MALSTAFTMLLMMLQASGDPRMAEVLTWLSGSTYNATGGQVTRTAIVMVILLAIVPLC RRWLTILPLGGDAARAVGMALTPSRIALLALAACLTATATMTIGPLSFVGLMAPHIAR MLGFRRTMPHMVISALAGGVLLVFADWCGRMALFPYQIPAGLLSSFIGAPYFIYLLRK QSR" misc_feature 227724..229715 /gene="fhuB" /locus_tag="STM0194" /note="Fe(3+)-hydroxamate ABC transporter permease FhuB; Region: PRK10577" /db_xref="CDD:236720" misc_feature order(228969..228971,228981..228989,229350..229355, 229359..229367,229371..229376,229380..229397, 229401..229409,229530..229532,229551..229553) /gene="fhuB" /locus_tag="STM0194" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119348" misc_feature order(228984..228986,228990..228992,229005..229007, 229167..229169,229173..229178,229185..229190, 229197..229202,229209..229211,229218..229223, 229227..229229,229260..229265,229272..229274, 229500..229502,229656..229658,229665..229670, 229677..229679,229686..229691,229698..229700) /gene="fhuB" /locus_tag="STM0194" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(229227..229229,229302..229304,229476..229478, 229488..229490,229620..229622,229647..229649) /gene="fhuB" /locus_tag="STM0194" /note="putative PBP binding regions [active]" /db_xref="CDD:119348" gene 230647..231218 /gene="stfA" /locus_tag="STM0195" /db_xref="GeneID:1251713" regulatory 230647..230652 /regulatory_class="ribosome_binding_site" /gene="stfA" /locus_tag="STM0195" /note="putative RBS for stfA; RegulonDB:STMS1H000568" CDS 230658..231218 /gene="stfA" /locus_tag="STM0195" /note="major fimbrial subunit StfA (gi|3747029)" /codon_start=1 /transl_table=11 /product="putative fimbrial subunit" /protein_id="NP_459200.1" /db_xref="GeneID:1251713" /translation="MNTAVKAAVAAALVMGVSSFANAAGSNTGTVTFTGTIEDSPCSI VVGDEHQTVNLGHIGTGSLMGGKESSKVDFHIGLENCAFTTEKEASTVFSAIGNESSA NPGSVALMRIGGGEMAGSSIVIGNHLGSAIKLGDAYSENLTMNGSVAAAKQTLNFKAW VKGDSAATTIDTGEFSSTVNFTISYL" misc_feature 230658..231215 /gene="stfA" /locus_tag="STM0195" /note="Fimbrial protein; Region: Fimbrial; cl01416" /db_xref="CDD:445401" gene 231287..233961 /gene="stfC" /locus_tag="STM0196" /db_xref="GeneID:1251714" regulatory 231287..231292 /regulatory_class="ribosome_binding_site" /gene="stfC" /locus_tag="STM0196" /note="putative RBS for stfC; RegulonDB:STMS1H000569" CDS 231304..233961 /gene="stfC" /locus_tag="STM0196" /note="outer membrane usher protein StfC (gi|3747030)" /codon_start=1 /transl_table=11 /product="putative fimbrial outer membrane usher" /protein_id="NP_459201.1" /db_xref="GeneID:1251714" /translation="MAHYKKFRLSTLAAVVGIVLAVGPENSYAEAPIQFNTRFLDVKD DASLDLSRFSRKGYIMPGSYHLQVLVNQSQIVQDNVITYSVDNNDPDNTYPCLSPELV SLLGLKPEIADKMIWINAGQCLQPDQLEGMETQTDLSQSTLTVIIPQAYLEYSDEEWD PPSRWDEGIPGVLFDYNVNSQWRHAEHDDGDEYDISGNGTVGANLGAWRLRADWQANY RHENDSEDKDNFGSSSEQNWDWNRYYAWRAIPQLRAQLTLGEGSLESDIFDGFNYVGG SLITDDQMLPPNLRGYAPDISGVARTNAKVTVTQRGRVIYESQVPAGPFRIQDINETV SGDLHVKIEEQSGQVQEYDVSTASIPFLTRPGQVRYKLAAGRPQDWDHNMEGGFFTSA EASWGIANGWSLYGGAIGEQDYQALALGLGRDLALLGAFSVDVTHSRATLPEGSAYGD GTIQGNSFRASYAKDFDDIDSRLTFAGYRFSEENYMTMDEFIDTHNDDNDRQRTGHDK EMYTLTYSQNFSAINVNAYINYTHRTYWNQPNQDSYNLTLSHYFDVGEVRGISLSVNG FRNEYDNERDDGVYVSLSIPWGNNRTLSYNGSFSDDNNSNQVGYYERIDDRNNYQINA GRADNGATLDGYYRYQASYADIDVSANYQEGDYTSGGLNIQGGATLTAKGGALHRTSV NGGSRLLVDVGDEANVPISGYSTPVYTNAFGKAVIVDVNDYYRNQVKIDITQLPEDAE AILSIAQATLTEGAIGYRRMEVLSGKKAMASIRLRDGGTPPFGAEVYNSRQQQLGIVG EDGSVYLIGINPGERLQVTWEGKTQCEATLPDPLPGDLFSGLLLPCIGDASSPEATQP EEKPLLQLHTQRRTSSTQPEALSSRYPTH" misc_feature 231304..233949 /gene="stfC" /locus_tag="STM0196" /note="putative fimbrial outer membrane usher protein StfC; Provisional; Region: PRK15284" /db_xref="CDD:185184" gene 233964..234731 /gene="stfD" /locus_tag="STM0197" /db_xref="GeneID:1251715" regulatory 233964..233969 /regulatory_class="ribosome_binding_site" /gene="stfD" /locus_tag="STM0197" /note="putative RBS for stfD; RegulonDB:STMS1H000570" CDS 233979..234731 /gene="stfD" /locus_tag="STM0197" /note="periplasmic fimbrial chaperone StfD (gi|3747031)" /codon_start=1 /transl_table=11 /product="putative periplasmic fimbrial chaperone" /protein_id="NP_459202.1" /db_xref="GeneID:1251715" /translation="MMSLKRYNLAAVLLLLLGGYGSAQAAIAPDRTRLVFRGEDKSIS VDLKNANSKLPYLAQSWVEDEKGVKITSPLIVVPPVQRIEPSAIGQVKIQGMPALASL PQDRETLFYYNVREIPPQSDKPNTLQIALQTRIKVFYRPQALSKIDMQHPWQYKITLQ RQGNGYQVSNTTGYYVVLSNASNRMDGTPARGFSPLVIAPKSNVTLGGDASELGHSPV LTYVNDYGARLPLIFNCTDNSCAVDEAKSRKS" misc_feature 233979..234728 /gene="stfD" /locus_tag="STM0197" /note="fimbrial chaperone StfD; Region: PRK15285" /db_xref="CDD:185185" gene 234737..235262 /gene="stfE" /locus_tag="STM0198" /db_xref="GeneID:1251716" regulatory 234737..234742 /regulatory_class="ribosome_binding_site" /gene="stfE" /locus_tag="STM0198" /note="putative RBS for stfE; RegulonDB:STMS1H000571" CDS 234750..235262 /gene="stfE" /locus_tag="STM0198" /note="minor fimbrial subunit StfE (gi|3747032)" /codon_start=1 /transl_table=11 /product="putative minor fimbrial subunit" /protein_id="NP_459203.1" /db_xref="GeneID:1251716" /translation="MRQWRLRLGTVTCAAMLSAVSMPLAAGSKTVNMTLTIVVNAAPP CTVTGGEVEFGNVLTTKVDGVNYRQAVGYRLSCNGRVSDYLKLQIQGNAVTINGESVL QTDVDGLGIRLQTATDGALISPGNTQWLSFQYSGGSGPAIEAIPVKNNGVTLTGGAFN AGATLVVDYQ" misc_feature 234750..235259 /gene="stfE" /locus_tag="STM0198" /note="putative minor fimbrial subunit StfE; Provisional; Region: PRK15286" /db_xref="CDD:185186" gene 235245..235735 /gene="stfF" /locus_tag="STM0199" /db_xref="GeneID:1251717" regulatory 235245..235250 /regulatory_class="ribosome_binding_site" /gene="stfF" /locus_tag="STM0199" /note="putative RBS for stfF; RegulonDB:STMS1H000572" CDS 235259..235735 /gene="stfF" /locus_tag="STM0199" /note="minor fimbrial subunit StfF (gi|3747033)" /codon_start=1 /transl_table=11 /product="putative minor fimbrial subunit" /protein_id="NP_459204.1" /db_xref="GeneID:1251717" /translation="MKKIVLTMLMGGSLAAQAADNLKFHGTLISPPNCTINNDQTIDV KFGNLLINKIDGTRYAQNVPYEITCDSTVRDETMAMTLTLSGSVSDFNPAAVNTSVAG LGIELRQNDQPFTLGSTITVNEQSIPVLKAIPVKKSGASLKEGGFDATATLQVDYQ" misc_feature 235259..235732 /gene="stfF" /locus_tag="STM0199" /note="fimbrial minor subunit StfF; Region: PRK15287" /db_xref="CDD:185187" gene 235718..236265 /gene="stfG" /locus_tag="STM0200" /db_xref="GeneID:1251718" regulatory 235718..235723 /regulatory_class="ribosome_binding_site" /gene="stfF" /locus_tag="STM0199" /note="putative RBS for stfG; RegulonDB:STMS1H000573" CDS 235735..236265 /gene="stfG" /locus_tag="STM0200" /note="putative adhesin; minor fimbrial subunit StfG (gi|3747034)" /codon_start=1 /transl_table=11 /product="putative minor fimbrial subunit" /protein_id="NP_459205.1" /db_xref="GeneID:1251718" /translation="MAKRQALLHGAACILCGALILPVSAADNLHFSGSLVASPCTLTM QGTGIAEVDFSSLDSSDFTPDGQSARKPLVFELTDCDSALSNGVQVTFTGTEATGMRG ILAIDSYSGASGIGIGIETLSGVPVGMNDKEGAIFTLVTGKNTLNLNAWVQRLPGEDL IPGRFSASALATFEYL" misc_feature 235735..236262 /gene="stfG" /locus_tag="STM0200" /note="putative minor fimbrial subunit StfG; Provisional; Region: PRK15288" /db_xref="CDD:185188" gene 236265..237104 /locus_tag="STM0201" /db_xref="GeneID:1251719" CDS 236265..237104 /locus_tag="STM0201" /note="hypothetical 30.2 da protein in stfG 3'region precursor. (SW:YADU_SALTY)" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_459206.1" /db_xref="GeneID:1251719" /translation="MKIIRTLFLLLIAVYGSSVVAKPMLKATFSSTTMYYGIGPNSDK SIVAEVTIATPEGVYYGSWNLSGHRKGETLTADSWSGPEPAPKVVLKDFDNTVSRSAC KNLPSNWRGCGSFTLEITVQSDDYGCPWLASSHIVATTFITNETYSPPDTRSSVCPKV PVDTFDISWDANVSKQKTTLMLDATGGTVNRTLHTYLMEGGKLCDGSKFDNRGAYCRF VSSGITLNVLGCDQSSVTTSAVDHPITDVELHDINVAVNTRNIGSGQFTSTCSFQYII DEL" misc_feature 236412..237101 /locus_tag="STM0201" /note="Protein of unknown function (DUF2544); Region: DUF2544; pfam11245" /db_xref="CDD:288142" gene complement(237212..238505) /gene="hemL" /locus_tag="STM0202" /db_xref="GeneID:1251720" CDS complement(237212..238492) /gene="hemL" /locus_tag="STM0202" /EC_number="5.4.3.8" /note="glutamate-1-semialdehyde 2,1-aminomutase. (SW:GSA_SALTY); glutamate-1-semialdehyde aminotransferase" /codon_start=1 /transl_table=11 /product="aminomutase" /protein_id="NP_459207.1" /db_xref="GeneID:1251720" /translation="MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYL YDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAELVTNL VPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTL GQPNSPGVPADFAKHTLTCTYNDLTSVRAAFEQYPQEIASIIVEPVAGNMNCVPPLPE FLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYYGVVPDLTCLGKIIGGGMPVGAF GGRRDVMDALAPTGPVYQAGTLSGNPIAMAAGFACLNEVAQPGIHETLDELTTRLAEG LCEAAQEAGIPLVVNHVGGMFGIFFTDAESVTCYQDVMACDVERFKRFFHLMLEEGVY LAPSAFEAGFMSVAHSMDDINNTIDAARRVFAKL" misc_feature complement(237215..238492) /gene="hemL" /locus_tag="STM0202" /note="glutamate-1-semialdehyde 2,1-aminomutase; Region: PRK00062" /db_xref="CDD:234607" misc_feature complement(order(237698..237700,237773..237778, 237782..237784,237881..237883,238058..238060, 238064..238069,238145..238153)) /gene="hemL" /locus_tag="STM0202" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99735" misc_feature complement(order(237698..237700,237773..237775, 237782..237784,237881..237883,238064..238069, 238145..238150)) /gene="hemL" /locus_tag="STM0202" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature complement(237698..237700) /gene="hemL" /locus_tag="STM0202" /note="catalytic residue [active]" /db_xref="CDD:99735" regulatory complement(238500..238505) /regulatory_class="ribosome_binding_site" /gene="hemL" /locus_tag="STM0202" /note="putative RBS for hemL; RegulonDB:STMS1H000574" gene 238662..240083 /gene="yadQ" /locus_tag="STM0203" /db_xref="GeneID:1251721" CDS 238662..240083 /gene="yadQ" /locus_tag="STM0203" /note="similar to E. coli putative channel transporter (AAC73266.1); Blastp hit to AAC73266.1 (473 aa), 78% identity in aa 1 - 473" /codon_start=1 /transl_table=11 /product="putative ClC family chlorine transport protein" /protein_id="NP_459208.1" /db_xref="GeneID:1251721" /translation="MKTDTSTFLAQQIVRLRRRDQIRRLMQRDKTPLAILFMAAVVGT LTGLVGVAFEKAVSWVQNMRIGALVQVADHAFLLWPLAFILSALLAMVGYFLVRKFAP EAGGSGIPEIEGALEELRPVRWWRVLPVKFIGGMGTLGAGMVLGREGPTVQIGGNLGR MVLDVFRMRSAEARHTLLATGAAAGLSAAFNAPLAGILFIIEEMRPQFRYNLISIKAV FTGVIMSSIVFRIFNGEAPIIEVGKLSDAPVNTLWLYLILGIIFGCVGPVFNSLVLRT QDMFQRFHGGEIKKWVLMGGAIGGLCGILGLIEPAAAGGGFNLIPIAAAGNFSVGLLL FIFITRVVTTLLCFSSGAPGGIFAPMLALGTLLGTAFGMAAAVLFPQYHLEAGTFAIA GMGALMAASVRAPLTGIVLVLEMTDNYQLILPMIITCLGATLLAQFLGGKPLYSTILA RTLAKQDAEQAEKNQNAPADENT" misc_feature 238767..240080 /gene="yadQ" /locus_tag="STM0203" /note="H(+)/Cl(-) exchange transporter ClcA; Region: PRK05277" /db_xref="CDD:235385" misc_feature order(238977..238991,239097..239111,239724..239738, 239994..239996) /gene="yadQ" /locus_tag="STM0203" /note="Cl- selectivity filter [active]" /db_xref="CDD:238504" misc_feature order(238980..238982,238986..238988,239103..239108, 239724..239732,239994..239996) /gene="yadQ" /locus_tag="STM0203" /note="Cl- binding residues [ion binding]; other site" /db_xref="CDD:238504" misc_feature 239103..239105 /gene="yadQ" /locus_tag="STM0203" /note="pore gating glutamate residue [active]" /db_xref="CDD:238504" misc_feature order(239241..239243,239268..239270,239307..239309, 239328..239330,239868..239870,239877..239879, 239901..239903,239937..239939,239958..239963, 239970..239972) /gene="yadQ" /locus_tag="STM0203" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238504" misc_feature 239268..239270 /gene="yadQ" /locus_tag="STM0203" /note="H+/Cl- coupling transport residue [active]" /db_xref="CDD:238504" gene 240120..240509 /gene="yadR" /locus_tag="STM0204" /db_xref="GeneID:1251722" CDS 240120..240509 /gene="yadR" /locus_tag="STM0204" /note="similar to E. coli orf, hypothetical protein (AAC73267.1); Blastp hit to AAC73267.1 (114 aa), 99% identity in aa 1 - 114" /codon_start=1 /transl_table=11 /product="putative HesB-like domain protein" /protein_id="NP_459209.3" /db_xref="GeneID:1251722" /translation="MGENLSNYRCRLEQNMSDDVALPLQFTDAAANKVKSLIADEDNP NLKLRVYITGGGCSGFQYGFTFDDQVNEGDMTIEKQGVGLVVDPMSLQYLVGGSVDYT EGLEGSRFIVTNPNAKSTCGCGSSFSI" misc_feature 240162..240506 /gene="yadR" /locus_tag="STM0204" /note="iron-sulfur cluster insertion protein ErpA; Provisional; Region: PRK13623" /db_xref="CDD:184186" gene complement(240610..241247) /gene="yadS" /locus_tag="STM0205" /db_xref="GeneID:1251723" CDS complement(240610..241233) /gene="yadS" /locus_tag="STM0205" /note="similar to E. coli orf, hypothetical protein (AAC73268.1); Blastp hit to AAC73268.1 (207 aa), 96% identity in aa 1 - 207" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459210.1" /db_xref="GeneID:1251723" /translation="MLVYWLDIVGTAVFAISGVLLAGKLRMDPFGVLVLGVVTAVGGG TIRDMALDNGPVFWVKDPTDLVVAMVTSMLTILLVRQPRRLPKWMLPVLDAVGLAVFV GIGVNKAFLAETGPLVAVCMGVITGVGGGIIRDVLAREIPMILRTEIYATACIIGGIV HATAFYTFSVPLESASMMGMVVTLFIRLAAIRWHLKLPTFALDENGR" misc_feature complement(240613..241233) /gene="yadS" /locus_tag="STM0205" /note="hypothetical protein; Provisional; Region: PRK10578" /db_xref="CDD:182564" regulatory complement(241242..241247) /regulatory_class="ribosome_binding_site" /gene="yadS" /locus_tag="STM0205" /note="putative RBS for yadS; RegulonDB:STMS1H000575" gene complement(241270..242077) /gene="btuF" /locus_tag="STM0206" /db_xref="GeneID:1251724" CDS complement(241270..242070) /gene="btuF" /locus_tag="STM0206" /note="similar to E. coli orf, hypothetical protein (AAC73269.1); Blastp hit to AAC73269.1 (266 aa), 81% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="putative cobalamin periplasmic binding protein" /protein_id="NP_459211.1" /db_xref="GeneID:1251724" /translation="MAKQMFRALVALLLTLPVWLYAAPRVITLSPANTELAFAAGITP VGVSSYSDYPPEAQKIEQVSTWQGMNLERIVALKPDLVVAWRGGNAERQVNQLTSLGI KVMWVDAVTIEQIADTLRQLAAWSPQPEKAQQAAQTLLNEYAALNAEYAGKAKKRVFL QFGMNPLFTSGKGSIQHQVLTTCGGENVFADSRVPWPQVSREQVLARHPQAIIVAGKA GEILKIEQYWGNLLKIPVIPLNSDWFERASPRIILAAKQLCNALSQVN" misc_feature complement(241273..242052) /gene="btuF" /locus_tag="STM0206" /note="vitamin B12-transporter protein BtuF; Provisional; Region: PRK03379" /db_xref="CDD:179575" misc_feature complement(order(241483..241485,241567..241569, 241810..241812,241816..241818,241921..241923, 241975..241980)) /gene="btuF" /locus_tag="STM0206" /note="cobalamin binding residues [chemical binding]; other site" /db_xref="CDD:238564" misc_feature complement(order(241465..241467,241855..241857)) /gene="btuF" /locus_tag="STM0206" /note="putative BtuC binding residues [active]" /db_xref="CDD:238564" misc_feature complement(order(241708..241713,241720..241722, 241729..241734,241738..241740,241747..241749, 241759..241761,241777..241779,241786..241788, 241813..241815)) /gene="btuF" /locus_tag="STM0206" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238564" gene complement(242063..242761) /gene="pfs" /locus_tag="STM0207" /db_xref="GeneID:1251725" CDS complement(242063..242761) /gene="pfs" /locus_tag="STM0207" /EC_number="3.2.2.16" /EC_number="3.2.2.9" /note="similar to E. coli orf, hypothetical protein (AAC73270.1); Blastp hit to AAC73270.1 (232 aa), 96% identity in aa 1 - 232" /codon_start=1 /transl_table=11 /product="5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase" /protein_id="NP_459212.1" /db_xref="GeneID:1251725" /translation="MKIGIIGAMEEEVTLLRDKIDNRQTITLGGCEIYTGQLNGTEVA LLKSGIGKVAAALGATLLLEHCKPDVIINTGSAGGLASTLKVGDIVVSDEARYHDADV TAFGYEYGQLPGCPAGFKADDKLIAAAESCIRELNLNAVRGLIVSGDAFINGSVGLAK IRHNFPDAVAVEMEATAIAHVCHNFNVPFVVVRAISDVADQQSHLSFDEFLAVAAKQS TLMVETLVQKLAHG" misc_feature complement(242072..242761) /gene="pfs" /locus_tag="STM0207" /note="5'-methylthioadenosine/adenosylhomocysteine nucleosidase; Region: PRK05584" /db_xref="CDD:180148" misc_feature complement(order(242126..242128,242165..242167, 242171..242176,242183..242185,242240..242251, 242309..242314,242528..242536,242609..242614, 242726..242728,242735..242740)) /gene="pfs" /locus_tag="STM0207" /note="active site" /db_xref="CDD:350159" misc_feature complement(order(242204..242215,242219..242224, 242231..242233,242243..242245,242309..242317, 242465..242467,242471..242473,242567..242575, 242579..242584,242591..242596,242600..242617, 242621..242623,242669..242671,242732..242734)) /gene="pfs" /locus_tag="STM0207" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:350159" regulatory complement(242072..242077) /regulatory_class="ribosome_binding_site" /gene="pfs" /locus_tag="STM0207" /note="putative RBS for btuF; RegulonDB:STMS1H000576" gene 242840..244363 /gene="dgt" /locus_tag="STM0208" /db_xref="GeneID:1251726" regulatory 242840..242845 /regulatory_class="ribosome_binding_site" /gene="dgt" /locus_tag="STM0208" /note="putative RBS for dgt; RegulonDB:STMS1H000577" CDS 242846..244363 /gene="dgt" /locus_tag="STM0208" /EC_number="3.1.5.1" /note="deoxyguanosinetriphosphate triphosphohydrolase. (SW:DGTP_SALTY)" /codon_start=1 /transl_table=11 /product="deoxyguanosine triphosphate triphosphohydrolase" /protein_id="NP_459213.1" /db_xref="GeneID:1251726" /translation="MASIDFRNKINWHRRYRSPQGVKTEHEILRIFESDRGRIINSPA IRRLQQKTQVFPLERNAAVRTRLTHSMEVQQVGRYIAKEILSRLKEQDRLEEYGLDAL TGPFESIVEMACLMHDIGNPPFGHFGEAAINDWFRQRLHPEDAESQPLTHDRCVVSSL RLQEGEENLNDIRRKVRQDICHFEGNAQGIRLVHTLMRMNLTWAQVGGILKYTRPAWW RGPVPDSHRYLMKKPGYYLSEEKYIARLRKELQLAPYSRFPLTWIMEAADDISYCVAD LEDAVEKRIFSVEQLYHHLYHAWCHHEKDSLFELVVGNAWEKSRANTLSRSTEDQFFM YLRVNTLNKLVPYAAQRFIDNLPQIFAGTFNQALLEDASGFSRLLELYKNVAVEHVFS HPDVEQLELQGYRVISGLLDIYQPLLSLSLNDFRELVEKERLKRFPIESRLFQKLSTR HRLAYVEVVSKLPTDSAEYPVLEYYYRCRLIQDYISGMTDLYAWDEYRRLMAVEQ" misc_feature 242846..244357 /gene="dgt" /locus_tag="STM0208" /note="deoxyguanosinetriphosphate triphosphohydrolase; Provisional; Region: dgt; PRK04926" /db_xref="CDD:235320" gene 244493..245920 /gene="htrA" /locus_tag="STM0209" /db_xref="GeneID:1251727" CDS 244493..245920 /gene="htrA" /locus_tag="STM0209" /EC_number="3.4.21.-" /note="protease DO precursor. (SW:DEGP_SALTY)" /codon_start=1 /transl_table=11 /product="periplasmic serine protease Do, heat shock protein" /protein_id="NP_459214.1" /db_xref="GeneID:1251727" /translation="MKKTTLAMSALALSLGLALSPLSATAAETSSSAMTAQQMPSLAP MLEKVMPSVVSINVEGSTTVNTPRMPRNFQQFFGDDSPFCQDGSPFQNSPFCQGGGNG GNGGQQQKFMALGSGVIIDAAKGYVVTNNHVVDNASVIKVQLSDGRKFDAKVVGKDPR SDIALIQIQNPKNLTAIKLADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLN VENYENFIQTDAAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKN LTSQMVEYGQVKRGELGIMGTELNSELAKAMKVDAQRGAFVSQVMPNSSAAKAGIKAG DVITSLNGKPISSFAALRAQVGTMPVGSKISLGLLREGKAITVNLELQQSSQSQVDSS TIFSGIEGAEMSNKGQDKGVVVSSVKANSPAAQIGLKKGDVIIGANQQPVKNIAELRK ILDSKPSVLALNIQRGDSSIYLLMQ" misc_feature 244496..245917 /gene="htrA" /locus_tag="STM0209" /note="serine endoprotease DegP; Region: PRK10942" /db_xref="CDD:236802" gene 246061..247230 /gene="cdaR" /locus_tag="STM0210" /db_xref="GeneID:1251728" regulatory 246061..246066 /regulatory_class="ribosome_binding_site" /gene="cdaR" /locus_tag="STM0210" /note="putative RBS for cdaR; RegulonDB:STMS1H000578" CDS 246073..247230 /gene="cdaR" /locus_tag="STM0210" /note="similar to E. coli orf, hypothetical protein (AAC73273.1); Blastp hit to AAC73273.1 (391 aa), 95% identity in aa 7 - 391" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459215.1" /db_xref="GeneID:1251728" /translation="MAGWHLDTKMAQDIVARTMRIIDTNINVMDARGRIIGSGDRERI GELHEGALLVLSQGRVVDIDDAVARHLHGVRQGINLPLRLEGEIVGVIGLTGEPEHLR KYGELVCMTAEMMLEQSRLMHLLAQDSRLREELVMNLIQAEENTPALVEWAQRLGIDL NQPRVAAVVEVDSGQLGVDSAMAELQQLQNALTTPERNNLIAIVSLTEMVVLKPALNS FGRWDAEDHRKRVEQLISRMKENGQLRFRVALGNYFTGPGSIARSYRTARTTMMVGKQ RMPESRSYFYQDLMLPVLLDSLRGGWQANELARPLVKLKAMDNNGLLRRTLTAWFRHN VQPLATSKALFIHRNTLEYRLNRISELTGLDLGNFDDRLLLYVALQLDEQR" misc_feature 246073..247227 /gene="cdaR" /locus_tag="STM0210" /note="CdaR family transcriptional regulator; Region: PRK11477" /db_xref="CDD:183155" gene complement(247319..247717) /gene="yaeH" /locus_tag="STM0211" /db_xref="GeneID:1251729" CDS complement(247319..247705) /gene="yaeH" /locus_tag="STM0211" /note="similar to E. coli putative structural protein (AAC73274.1); Blastp hit to AAC73274.1 (128 aa), 95% identity in aa 1 - 128" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459216.1" /db_xref="GeneID:1251729" /translation="MYDNLKSLGITNPEEIDRYSLRQEANNDILKIYFQKDRGEFFAK SVKFKYPRQRKTVVADGIGQGYKEVQEISPNLRYVIDELDQICQRDRSELDLKRKILD DLRHLESVVANKISEIEADLDKLTRK" misc_feature complement(247331..247705) /gene="yaeH" /locus_tag="STM0211" /note="DUF3461 family protein; Region: PRK13677" /db_xref="CDD:184234" regulatory complement(247712..247717) /regulatory_class="ribosome_binding_site" /gene="yaeH" /locus_tag="STM0211" /note="putative RBS for yaeH; RegulonDB:STMS1H000579" gene 247943..249253 /locus_tag="STM0212" /db_xref="GeneID:1251730" regulatory 247943..247948 /regulatory_class="ribosome_binding_site" /locus_tag="STM0212" /note="putative RBS for STM0212; RegulonDB:STMS1H000580" CDS 247952..249253 /locus_tag="STM0212" /note="similar to E. coli putative transport protein, shikimate (AAC75045.1); Blastp hit to AAC75045.1 (438 aa), 40% identity in aa 13 - 435" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459217.1" /db_xref="GeneID:1251730" /translation="MSGTYNATIRRVVVSAWIGNSIEYYDFLLYGLASALVFGPLFFP GASPLTATLSSFASFGVGFISRPLGALFFGNRGDTLGRKNTLLITLGGMGAVTFLIGC LPSYASIGALAPALLVILRFLQGFMVGGEWGGAMLMVVEYAAGKHRGRLSALSQTGGL TGQLLATGVFIVVTQLPQEALLSWGWRIPFLLSALLVLPGLYMRHRLDETPVFRAFKK QQAINHRQQREERPVVKVVREQWRSILLIIILRFAESVPFFLATVFAVSWATTQLGIA SLTILYIVMFTCLLAYPMHVLFGIMSDRRGCRQVYIFGALFVAAMAFPFFWLLESRSL ILMTMGYVLLINIGHNSLNAVQPSFFAGLFHPPVRYSGSSIGAQLGAVVAGGFTPFIA KALSAVYDNSWALVAGYVVLTALASAFAAKIAPETVLPHSP" misc_feature 247979..249214 /locus_tag="STM0212" /note="Shikimate transporter and similar proteins of the Major Facilitator Superfamily; Region: MFS_ShiA_like; cd17369" /db_xref="CDD:340927" misc_feature order(248018..248023,248030..248035,248042..248044, 248159..248161,248333..248338,248342..248350, 248357..248359,248417..248419,248426..248431, 248438..248440,248702..248704,248711..248716, 248723..248731,248738..248740,248822..248824, 248834..248836,248993..248998,249008..249010, 249020..249022,249068..249070,249077..249082, 249089..249094,249101..249103) /locus_tag="STM0212" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340927" gene complement(249290..250114) /gene="dapD" /locus_tag="STM0213" /db_xref="GeneID:1251731" CDS complement(249290..250114) /gene="dapD" /locus_tag="STM0213" /EC_number="2.3.1.117" /note="similar to E. coli 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase (AAC73277.1); Blastp hit to AAC73277.1 (274 aa), 97% identity in aa 1 - 274" /codon_start=1 /transl_table=11 /product="2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase" /protein_id="NP_459218.1" /db_xref="GeneID:1251731" /translation="MQQLQNVIETAFERRADITPANVDTVTREAVNQVISLLDSGALR VAEKIDGQWVTHQWLKKAVLLSFRINDNQVIDGAESRYFDKVPMKFADYDEARFQKEG FRVVPPAAVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSG GVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTKIYDRE TGEVHYGRVPAGSVVVSGNLPSKDGKYSLYCAVIVKKVDAKTRGKVGINELLRTID" misc_feature complement(249302..250114) /gene="dapD" /locus_tag="STM0213" /note="2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional; Region: dapD; PRK11830" /db_xref="CDD:236996" gene complement(250144..252825) /gene="glnD" /locus_tag="STM0214" /db_xref="GeneID:1251732" CDS complement(250144..252816) /gene="glnD" /locus_tag="STM0214" /EC_number="2.7.7.59" /note="[protein-PII] uridylyltransferase. (SW:GLND_SALTY)" /codon_start=1 /transl_table=11 /product="uridylyltransferase" /protein_id="NP_459219.1" /db_xref="GeneID:1251732" /translation="MNTLPEQHANTALPTLPDQPQNPGVWPRAELTVAGIKARIDIFQ HWLGEAFDSGICAEQLIEARTEFIDQLLQRLWIEAGFGQIADLALVAVGGYGRGELHP LSDIDLLILSRKKLPDEQAQKVGELLTLLWDVKLDVGHSVRTLEECLLEGLSDLTVAT NLIETRLLIGDVALFLALQKHIFSEGFWPSDKFYAAKVEEQNQRHQRYHGTSYNLEPD IKSSPGGLRDIHTLQWVARRHFGATSLDEMVGFGFLTPAERAELNECLHILWRIRFAL HLVVSRYDNRLLFDRQLSVAQRLNYSGEGNDPVERMMKDYFRVTRRVSELNQMLLQLF DEAILALPADEKPRPVDDEFQLRGTLIDLRDDTLFIREPQAILRMFYMMVRNSAITGI YSTTLRHLRHARRHLSQPLCYIPEARTLFLSMLRHPGAVSRGLLPMHRHSVLWAYMPQ WSHIVGQMQFDLFHAYTVDEHTIRVMLKLESFAKEETRQRHPLCVDLWPRLPHPELIL IAALFHDIAKGRGGDHSVLGAQDVLTFAELHGLNSRETQLVAWLVRQHLLMSVTAQRR DIQDPEVIKQFAEEVQTETRLRFLVCLTVADICATNETLWNSWKQSLLRELYFATEKQ LRRGMQNTPDMRERVRHHQLQALALLRMDNIDEAALHKIWTRCRANYFVRHSPNQLAW HARHLLQHDLRQPLVLLSPQATRGGTEIFIWSPDRPYLFAAVCAELDRRNLSVHDAQI FTTRDGMAMDTFIVLEPDGSPLAADRHDVIRTGLEQTITQRSWQPPQPRRQPAKLRHF TVETEVNFLPTHTDRKSFMELIALDQPGLLARVGQIFADLGISLHGARITTIGERVED LFIIATADRRALNNVLQLEVQQRLTAALNPNDKG" misc_feature complement(250147..252798) /gene="glnD" /locus_tag="STM0214" /note="bifunctional uridylyltransferase/uridylyl-removing protein GlnD; Region: PRK05007" /db_xref="CDD:235329" regulatory complement(252820..252825) /regulatory_class="ribosome_binding_site" /gene="glnD" /locus_tag="STM0214" /note="putative RBS for glnD; RegulonDB:STMS1H000581" gene complement(253053..253860) /gene="map" /locus_tag="STM0215" /db_xref="GeneID:1251733" CDS complement(253053..253847) /gene="map" /locus_tag="STM0215" /EC_number="3.4.11.18" /note="methionine aminopeptidase. (SW:AMPM_SALTY)" /codon_start=1 /transl_table=11 /product="methionine aminopeptidase" /protein_id="NP_459220.1" /db_xref="GeneID:1251733" /translation="MAISIKTSEDIEKMRVAGRLAAEVLEMIEPYIKPGVTTGELDRI CNDYIVNEQHAISACLGYHGYPKSVCISINEVVCHGIPDDAKHLKDGDIVNIDVTVIK DEFHGDTSKMFIVGKPTILGERLCRVTQESLYLGIKMVKPGIRLRTIGAAIQKYAEGE GFSVVREYCGHGIGRGFHEEPQVLHYDADDGGVVLQPGMTFTIEPMLNAGDYRIRTMK DGWTVKTKDRSLSAQYEHTIVVTENGCEILTLRKDDTIPAIITHDE" misc_feature complement(253086..253847) /gene="map" /locus_tag="STM0215" /note="methionine aminopeptidase; Validated; Region: PRK05716" /db_xref="CDD:235576" misc_feature complement(order(253143..253145,253236..253238, 253335..253337,253524..253526,253557..253559, 253611..253613)) /gene="map" /locus_tag="STM0215" /note="active site" /db_xref="CDD:238519" regulatory complement(253855..253860) /regulatory_class="ribosome_binding_site" /gene="map" /locus_tag="STM0215" /note="putative RBS for map; RegulonDB:STMS1H000582" gene 254285..255023 /gene="rpsB" /locus_tag="STM0216" /db_xref="GeneID:1251734" regulatory 254285..254290 /regulatory_class="ribosome_binding_site" /gene="rpsB" /locus_tag="STM0216" /note="putative RBS for rpsB; RegulonDB:STMS1H000583" CDS 254298..255023 /gene="rpsB" /locus_tag="STM0216" /note="similar to E. coli 30S ribosomal subunit protein S2 (AAC73280.1); Blastp hit to AAC73280.1 (241 aa), 97% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S2" /protein_id="NP_459221.1" /db_xref="GeneID:1251734" /translation="MATVSMRDMLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLE KTVPMFNEALAELNKISARKGKILFVGTKRAASEAVKEAANSCDQFFVNHRWLGGMLT NWKTVRQSIKRLKDLETQSQDGTFEKLTKKEALMRTRELEKLENSLGGIKDMGGLPDA LFVIDADHEHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVSLYLGAVA ATVREGRSQDLASQAEESFVEAE" misc_feature 254298..255020 /gene="rpsB" /locus_tag="STM0216" /note="30S ribosomal protein S2; Provisional; Region: rpsB; PRK05299" /db_xref="CDD:235396" misc_feature order(254370..254375,254400..254408,254580..254582, 254586..254594,254601..254606,254820..254822, 254829..254831) /gene="rpsB" /locus_tag="STM0216" /note="rRNA interaction site [nucleotide binding]; other site" /db_xref="CDD:100106" misc_feature order(254826..254831,254835..254837,254877..254888) /gene="rpsB" /locus_tag="STM0216" /note="S8 interaction site [active]" /db_xref="CDD:100106" misc_feature 254931..254948 /gene="rpsB" /locus_tag="STM0216" /note="putative laminin-1 binding site [active]" /db_xref="CDD:100106" gene 255269..256132 /gene="tsf" /locus_tag="STM0217" /db_xref="GeneID:1251735" regulatory 255269..255274 /regulatory_class="ribosome_binding_site" /gene="tsf" /locus_tag="STM0217" /note="putative RBS for tsf; RegulonDB:STMS1H000584" CDS 255281..256132 /gene="tsf" /locus_tag="STM0217" /note="similar to E. coli protein chain elongation factor EF-Ts (AAC73281.1); Blastp hit to AAC73281.1 (283 aa), 96% identity in aa 1 - 283" /codon_start=1 /transl_table=11 /product="protein chain elongation factor EF-Ts" /protein_id="NP_459222.1" /db_xref="GeneID:1251735" /translation="MAEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS GAIKAAKKAGNVAADGVIKTKIDGNVAFILEVNCQTDFVAKDAGFQAFADKVLDAAVA GKITDVEVLKAQFEEERVALVAKIGENINIRRVASLEGDVLGSYQHGARIGVLVAAKG ADEELVKQLAMHVAASKPEFVKPEDVSADVVEKEYQVQLDIAMQSGKPKEIAEKMVEG RMKKFTGEVSLTGQPFVMEPSKSVGQLLKEHNADVTGFIRFEVGEGIEKVETDFAAEV AAMSKQS" misc_feature 255284..256126 /gene="tsf" /locus_tag="STM0217" /note="Translation elongation factor EF-Ts [Translation, ribosomal structure and biogenesis]; Region: Tsf; COG0264" /db_xref="CDD:440034" gene 256265..257002 /gene="pyrH" /locus_tag="STM0218" /db_xref="GeneID:1251736" regulatory 256265..256270 /regulatory_class="ribosome_binding_site" /gene="pyrH" /locus_tag="STM0218" /note="putative RBS for pyrH; RegulonDB:STMS1H000585" CDS 256277..257002 /gene="pyrH" /locus_tag="STM0218" /EC_number="2.7.4.-" /note="similar to E. coli uridylate kinase (AAC73282.1); Blastp hit to AAC73282.1 (241 aa), 98% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="uridylate kinase" /protein_id="NP_459223.1" /db_xref="GeneID:1251736" /translation="MATNAKPVYKRILLKLSGEALQGTEGFGIDASILDRMAQEIKEL VELGIQVGVVIGGGNLFRGAGLAKAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNA RLMSAIPLNGVCDNYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEADV VLKATKVDGVFTADPAKDPSATMYDQLTYSEVLDKELKVMDLAAFTLARDHKLPIRVF NMNKPGALRRVVMGEKEGTLITE" misc_feature 256289..256999 /gene="pyrH" /locus_tag="STM0218" /note="Uridylate kinase [Nucleotide transport and metabolism]; Region: PyrH; COG0528" /db_xref="CDD:440294" gene 257136..257706 /gene="frr" /locus_tag="STM0219" /db_xref="GeneID:1251737" regulatory 257136..257141 /regulatory_class="ribosome_binding_site" /gene="frr" /locus_tag="STM0219" /note="putative RBS for frr; RegulonDB:STMS1H000586" CDS 257149..257706 /gene="frr" /locus_tag="STM0219" /note="similar to E. coli ribosome releasing factor (AAC73283.1); Blastp hit to AAC73283.1 (185 aa), 93% identity in aa 1 - 185" /codon_start=1 /transl_table=11 /product="ribosome releasing factor" /protein_id="NP_459224.1" /db_xref="GeneID:1251737" /translation="MISDIRKDAEVRMEKCVEAFKTQISKVRTGRASPSLLDGIVVEY YGTPTPLRQLASVTVEDSRTLKINVFDRSMGPAVEKAIMASDLGLNPSSAGTDIRVPL PPLTEERRKDLTKIVRGEAEQARVAVRNVRRDANDKVKALLKDKAISEDDDRRSQEEV QKMTDAAIKKVDAALADKEAELMQF" misc_feature 257149..257703 /gene="frr" /locus_tag="STM0219" /note="Ribosome recycling factor [Translation, ribosomal structure and biogenesis]; Region: Frr; COG0233" /db_xref="CDD:440003" misc_feature order(257233..257244,257452..257463) /gene="frr" /locus_tag="STM0219" /note="hinge region; other site" /db_xref="CDD:238288" gene 257836..259043 /gene="dxr" /locus_tag="STM0220" /db_xref="GeneID:1251738" regulatory 257836..257841 /regulatory_class="ribosome_binding_site" /gene="dxr" /locus_tag="STM0220" /note="putative RBS for dxr; RegulonDB:STMS1H000587" CDS 257847..259043 /gene="dxr" /locus_tag="STM0220" /EC_number="1.1.1.-" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73284.1); Blastp hit to AAC73284.1 (398 aa), 88% identity in aa 1 - 397" /codon_start=1 /transl_table=11 /product="1-deoxy-D-xylulose 5-phosphate reductoisomerase" /protein_id="NP_459225.1" /db_xref="GeneID:1251738" /translation="MKQLTILGSTGSIGCSTLDVVRHNPDSFRVIALVAGKNVARMAE QCLEFSPRYAVMDDTSSAEQLKIMLQQHGSRTEVLSGQQAACEMAALDEVGHVMAAIV GAAGLLPTLAAIRAGKTILLANKESLVTCGRLFMDEVKRSNARLLPVDSEHNAIFQSL PQSIQHNLGYADLEQNGVTSILLTGSGGPFRETPMCDLAAMTPDQACRHPNWSMGRKI SVDSATMMNKGLEYIEARWLFNASARQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDM RTPIAHTMAWPNRVTSGAQPLDFCKLSALTFSAPDYQRYPCLKLAMEAFEQGQAATTA LNAANEITVAAFLAQQIRFTDIAGLNLAVLERMDLQEPASVEDVLQVDAIAREVARKQ VIRLSR" misc_feature 257847..259040 /gene="dxr" /locus_tag="STM0220" /note="1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional; Region: PRK05447" /db_xref="CDD:235472" gene 259337..260114 /gene="uppS" /locus_tag="STM0221" /db_xref="GeneID:1251739" regulatory 259337..259342 /regulatory_class="ribosome_binding_site" /gene="uppS" /locus_tag="STM0221" /note="putative RBS for uppS; RegulonDB:STMS1H000588" CDS 259356..260114 /gene="uppS" /locus_tag="STM0221" /EC_number="2.5.1.31" /note="similar to E. coli orf, hypothetical protein (AAC73285.1); Blastp hit to AAC73285.1 (253 aa), 93% identity in aa 2 - 253" /codon_start=1 /transl_table=11 /product="undecaprenyl pyrophosphate synthetase (di-trans, poly-cis-decaprenylcistransferase)" /protein_id="NP_459226.1" /db_xref="GeneID:1251739" /translation="MLSATQPVSENLPAHGCRHVAIIMDGNGRWAKKQGKIRAFGHKA GAKSVRRAVSFAANNGIDALTLYAFSSENWNRPAQEVSALMELFVWALDSEVKSLHRH NVRLRIIGDISRFNSRLQERIRKSEALTAHNTGLTLNIAANYGGRWDIVQGVRQLAEQ VQAGVLRPDQIDEERLGQQICMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDV LWPDFDEQDFEGALHAFANRERRFGGTEPGDDKA" misc_feature 259425..260111 /gene="uppS" /locus_tag="STM0221" /note="(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase; Region: PRK10240" /db_xref="CDD:182326" misc_feature order(259425..259442,259467..259469,259479..259481, 259491..259493,259500..259502,259557..259559, 259581..259583,259593..259595,259614..259619, 259626..259628,259773..259775,259932..259934, 259950..259952,259956..259958) /gene="uppS" /locus_tag="STM0221" /note="active site" /db_xref="CDD:259850" misc_feature order(259794..259799,259803..259808,259815..259820, 259866..259874,259881..259883,259914..259916, 259947..259961,259968..259976,259980..259994, 259998..260000) /gene="uppS" /locus_tag="STM0221" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:259850" gene 260114..260984 /gene="cdsA" /locus_tag="STM0222" /db_xref="GeneID:1251740" regulatory 260114..260119 /regulatory_class="ribosome_binding_site" /gene="cdsA" /locus_tag="STM0222" /note="putative RBS for cdsA; RegulonDB:STMS1H000589" CDS 260127..260984 /gene="cdsA" /locus_tag="STM0222" /EC_number="2.7.7.41" /note="similar to E. coli CDP-diglyceride synthetase (AAC73286.1); Blastp hit to AAC73286.1 (249 aa), 95% identity in aa 1 - 249" /codon_start=1 /transl_table=11 /product="CDP-diglyceride synthase" /protein_id="NP_459227.1" /db_xref="GeneID:1251740" /translation="MLKYRLISAFVLIPAVIAALFLLPPVGFAIITLVVCMLAAWEWG QLSGFAARSQRVWLAVLCGLLLALMLFLLPEYHHNIRQPLVEMSLWASLGWWVVALLL VLFYPGSAAIWRNSKTLRLIFGLLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMIL VWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLNVAPV ILLICSVVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFAC LLLLVFRTL" misc_feature 260127..260981 /gene="cdsA" /locus_tag="STM0222" /note="phosphatidate cytidylyltransferase; Region: cdsA; PRK11624" /db_xref="CDD:183240" gene 260988..262348 /gene="yaeL" /locus_tag="STM0223" /db_xref="GeneID:1251741" regulatory 260988..260993 /regulatory_class="ribosome_binding_site" /gene="yaeL" /locus_tag="STM0223" /note="putative RBS for yaeL; RegulonDB:STMS1H000590" CDS 260996..262348 /gene="yaeL" /locus_tag="STM0223" /note="similar to E. coli orf, hypothetical protein (AAC73287.1); Blastp hit to AAC73287.1 (450 aa), 88% identity in aa 1 - 450" /codon_start=1 /transl_table=11 /product="putative membrane-associated Zn-dependent protease" /protein_id="NP_459228.1" /db_xref="GeneID:1251741" /translation="MLSILWNLAAFIIALGVLITVHEFGHFWVARRCGVRVERFSIGF GKALWRRTDRYGTEYVIALIPLGGYVKMLDERAEPVAPELRRHAFNNKTVGQRAAIIA AGPVANFIFAIFAYWLVFIIGVPGVRPVIGEITPNSIAAQAQIAPGTELKAVDGIETP DWDAVRLQLVSKIGDQQTTVSVAPFGSDQRQDKTLDLRHWAFEPDKQDPVSSLGIRPR GPQIEPVLSEVQANSAASKAGLQAGDRIVKVDGQPLTQWMKFVTFVRDNPGKPLALEI ERQGSALSLTLTPDTKSVNGKAEGFAGVVPKIIPLPEEYKTIRQYGPFSAILEATDKT WQLMKLTVSMLGKLITGDVKLNNLSGPISIAQGAGMSAEFGVIYYLMFLALISVNLGI INLFPLPVLDGGHLLFLAIEKLKGGPVSERVQDFSYRIGSILLVLLMGLALFNDFSRL " misc_feature 260999..262345 /gene="yaeL" /locus_tag="STM0223" /note="sigma E protease regulator RseP; Region: PRK10779" /db_xref="CDD:182723" gene 262380..264794 /gene="yaeT" /locus_tag="STM0224" /db_xref="GeneID:1251742" CDS 262380..264794 /gene="yaeT" /locus_tag="STM0224" /note="similar to E. coli orf, hypothetical protein (AAC73288.1); Blastp hit to AAC73288.1 (810 aa), 92% identity in aa 1 - 810" /codon_start=1 /transl_table=11 /product="putative outer membrane antigen" /protein_id="NP_459229.1" /db_xref="GeneID:1251742" /translation="MAMKKLLIASLLFSSATVYGAEGFVVKDIHFEGLQRVAVGAALL SMPVRTGDTVNDEDISNTIRALFATGNFEDVRVLRDGNTLLVQVKERPTIASITFSGN KSVKDDMLKQNLEASGVRVGESLDRTTLSDIEKGLEDFYYSVGKYSASVKAVVTPLPR NRVDLKLVFQEGVSAKIQQINIVGNHAFSTEELISHFQLRDEVPWWNVVGDRKYQKQK LAGDLETLRSYYLDRGYARFNIDSTQVSLTPDKKGIYITVNITEGDQYKLSGVQVSGN LAGHSAEIENLTKIEPGELYNGTKVTKMEDDIKKLLGRYGYAYPRVQSQPEINDADKT VKLRVNVDAGNRFYVRKIRFEGNDTSKDSVLRREMRQMEGAWLGSDLVDQGKERLNRL GFFETVDTDTQRVPGSPDQVDVVYKVKERNTGSFNFGIGYGTESGVSFQAGVQQDNWL GTGYSVGINGTKNDYQTYSELSVTNPYFTVDGVSLGGRIFYNDFQADDADLSDYTNKS YGTDVTLGFPINEYNTLRAGLGYVHNKLSNMQPQIAMDRYLESMGQSADTSSFAADDF TFNYGWTYNKLDRGYFPTDGSRVNLTGKVTIPGSDNEYYKVSLDTATYVPIDNDHKWV VLGRTRWGYGDGLGGKEMPFYENFYAGGSSTVRGFQSNTIGPKAVYKNGAHTSWDDND DYEDCTQESGCKSDDAVGGNAMAVASLEFITPTPFISEKYANSVRTSFFWDMGTVWDT NWDPSSAPSDVPDYSDPGNIRMSAGIALQWMSPLGPLVFSYAQPFKKYDGDKAEQFQF NIGKTW" misc_feature 262380..264791 /gene="yaeT" /locus_tag="STM0224" /note="outer membrane protein assembly factor YaeT; Provisional; Region: PRK11067" /db_xref="CDD:236834" gene 264905..265402 /gene="hlpA" /locus_tag="STM0225" /db_xref="GeneID:1251743" regulatory 264905..264910 /regulatory_class="ribosome_binding_site" /gene="hlpA" /locus_tag="STM0225" /note="putative RBS for hlpA; RegulonDB:STMS1H000591" CDS 264917..265402 /gene="hlpA" /locus_tag="STM0225" /note="outer membrane protein OMPH precursor. (SW:OMPH_SALTY)" /codon_start=1 /transl_table=11 /product="histone-like protein, located in outer membrane" /protein_id="NP_459230.1" /db_xref="GeneID:1251743" /translation="MKKWLLAAGLGLAMVTSAQAADKIAIVNMGNLFQQVAQKTGVSN TLENEFKGRAAELQKMETDLQSKMQRLQSMKAGSDRTKLEKDVMSQRQTFAQKAQAFE KDRARRSNEERNKLVTRIQTAVKKVANDQSIDLVVDANTVAYNSSDVKDITADVLKQV K" misc_feature 264917..265399 /gene="hlpA" /locus_tag="STM0225" /note="molecular chaperone Skp; Region: PRK10780" /db_xref="CDD:182724" gene 265391..266431 /gene="lpxD" /locus_tag="STM0226" /db_xref="GeneID:1251744" regulatory 265391..265396 /regulatory_class="ribosome_binding_site" /gene="hlpA" /locus_tag="STM0225" /note="putative RBS for lpxD; RegulonDB:STMS1H000592" CDS 265406..266431 /gene="lpxD" /locus_tag="STM0226" /EC_number="2.3.1.-" /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. (SW:LPXD_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-3-O-(3-hydroxymyristoyl)-glucosamine n-acyltransferase" /protein_id="NP_459231.1" /db_xref="GeneID:1251744" /translation="MPSIRLADLAEQLDAELHGDGDIVITGVASMQSATTGHITFMVN PKYREHLGLCQASAVVMTQDDLPFAKSAALVVKNPYLTYARMAQILDTTPQPAQNIAP SAVIDATATLGSNVSVGANAVIESGVQLGDNVVIGAGCFVGKNSKIGAGSRLWANVTI YHDIQIGENCLIQSSTVIGADGFGYANDRGNWVKIPQLGRVIIGDRVEIGACTTIDRG ALDDTVIGNGVIIDNQCQIAHNVVIGDNTAVAGGVIMAGSLKIGRYCMIGGASVINGH MEICDKVTVTGMGMVMRPITEPGVYSSGIPLQPNKVWRKTAALVMNIDDMSKRLKAIE RKVNQQD" misc_feature 265409..266425 /gene="lpxD" /locus_tag="STM0226" /note="UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional; Region: lpxD; PRK00892" /db_xref="CDD:234858" gene 266524..266992 /gene="fabZ" /locus_tag="STM0227" /db_xref="GeneID:1251745" regulatory 266524..266529 /regulatory_class="ribosome_binding_site" /gene="fabZ" /locus_tag="STM0227" /note="putative RBS for fabZ; RegulonDB:STMS1H000593" CDS 266537..266992 /gene="fabZ" /locus_tag="STM0227" /EC_number="4.2.1.-" /note="(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase. (SW:FABZ_SALTY)" /codon_start=1 /transl_table=11 /product="(3R)-hydroxymyristol acyl carrier protein dehydratase" /protein_id="NP_459232.1" /db_xref="GeneID:1251745" /translation="MTTNTHTLQIEEILELLPHRFPFLLVDRVLDFEEGRFLRAVKNV SVNEPFFQGHFPGKPILPGVLILEAMAQATGILAFKSVGKLEPGELYYFAGIDEARFK RPVVPGDQMIMEVTFEKTRRGLTRFKGVALVDGKVVCEATMMCARSREA" misc_feature 266540..266986 /gene="fabZ" /locus_tag="STM0227" /note="3-hydroxyacyl-ACP dehydratase FabZ; Region: fabZ; PRK00006" /db_xref="CDD:234568" gene 266984..267784 /gene="lpxA" /locus_tag="STM0228" /db_xref="GeneID:1251746" regulatory 266984..266989 /regulatory_class="ribosome_binding_site" /gene="fabZ" /locus_tag="STM0227" /note="putative RBS for lpxA; RegulonDB:STMS1H000594" CDS 266996..267784 /gene="lpxA" /locus_tag="STM0228" /EC_number="2.3.1.129" /note="acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase. (SW:LPXA_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine acetyltransferase" /protein_id="NP_459233.1" /db_xref="GeneID:1251746" /translation="MIDKSAFIHPTAIVEDGAVIGANAHIGPFCIVGPQVEIGEGTVL KSHVVVNGQTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIHRGT VQGGGLTKVGSDNLLMINAHVAHDCTVGNRCILANNATLAGHVSVDDFAIIGGMTAVH QFCIIGAHVMVGGCSGVAQDVPPYVIAQGNHATPFGVNIEGLKRRGFSREGLVAIRNA YKLLYRSGKTLDEAKLEIAELAEKHPEVKAFTEFFERSTRGPIR" misc_feature 267005..267781 /gene="lpxA" /locus_tag="STM0228" /note="acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase; Region: PRK05289" /db_xref="CDD:235390" gene 267768..268932 /gene="lpxB" /locus_tag="STM0229" /db_xref="GeneID:1251747" regulatory 267768..267773 /regulatory_class="ribosome_binding_site" /gene="lpxA" /locus_tag="STM0228" /note="putative RBS for lpxB; RegulonDB:STMS1H000595" CDS 267784..268932 /gene="lpxB" /locus_tag="STM0229" /EC_number="2.4.1.182" /note="similar to E. coli tetraacyldisaccharide-1-P; lipid A biosynthesis, penultimate step (AAC73293.1); Blastp hit to AAC73293.1 (382 aa), 94% identity in aa 1 - 382" /codon_start=1 /transl_table=11 /product="tetraacyldisaccharide-1-P" /protein_id="NP_459234.1" /db_xref="GeneID:1251747" /translation="MAAQRPLTIALVAGETSGDILGAGLIRALKARVPNARFVGVAGP RMQAEGCEAWYEMEELAVMGIVEVLGRLRRLLHIRADLTRRFTELKPDVFVGIDAPDF NITLEGNLKKKGIKTIHYVSPSVWAWRQKRVFKIGRSTHMVLAFLPFEKAFYDKFNVP CRFIGHTMADAMPLDPDKNAARDVLGIPHDAHCLALLPGSRGAEVEMLSADFLKTAQL LRQRYPDLEVVVPLVNAKRREQFEKIKAEVAPDLAVHLLDGMAREAMIASDAALLASG TAALECMLAKCPMVVGYRMKPFTFWLAKRLVKTEYVSLPNLLAGRELVKELLQEECEP QKLAEALLPLLANGKTSHAMHDTFRELHQQIRCNADEQAADAVLELAQ" misc_feature 267784..268923 /gene="lpxB" /locus_tag="STM0229" /note="lipid-A-disaccharide synthase; Region: lpxB; TIGR00215" /db_xref="CDD:129319" gene 268915..269525 /gene="rnhB" /locus_tag="STM0230" /db_xref="GeneID:1251748" regulatory 268915..268920 /regulatory_class="ribosome_binding_site" /gene="rnhB" /locus_tag="STM0230" /note="putative RBS for rnhB; RegulonDB:STMS1H000596" CDS 268929..269525 /gene="rnhB" /locus_tag="STM0230" /EC_number="3.1.26.4" /note="ribonuclease HII. (SW:RNH2_SALTY)" /codon_start=1 /transl_table=11 /product="RNAse HII" /protein_id="NP_459235.1" /db_xref="GeneID:1251748" /translation="MIEFVYPHTHLVAGVDEVGRGPLVGAVVTAAVILDPARPIVGLN DSKKLSEKRRLSLYDEIKEKALSWSLGRAEAHEIDELNILHATMLAMQRAVAGLHIAP EYVLIDGNRCPELPVPSMAVVKGDSRVAEISAASILAKVTRDAEMAALDIVFPQYGFA QHKGYPTAFHLEKLAQYGATAHHRRSFAPVKRALGLVS" misc_feature 268959..269510 /gene="rnhB" /locus_tag="STM0230" /note="Ribonuclease HII [Replication, recombination and repair]; Region: RnhB; COG0164" /db_xref="CDD:439934" gene 269536..273031 /gene="dnaE" /locus_tag="STM0231" /db_xref="GeneID:1251749" regulatory 269536..269541 /regulatory_class="ribosome_binding_site" /gene="dnaE" /locus_tag="STM0231" /note="putative RBS for dnaE; RegulonDB:STMS1H000597" CDS 269549..273031 /gene="dnaE" /locus_tag="STM0231" /EC_number="2.7.7.7" /note="DNA polymerase III, alpha chain. (SW:DP3A_SALTY)" /codon_start=1 /transl_table=11 /product="DNA polymerase III, alpha subunit" /protein_id="NP_459236.1" /db_xref="GeneID:1251749" /translation="MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAASLGMPALAITDF TNLCGLVKFYGAGHGAGIKPIVGADFNVHNELLGDELTHLTVLAANNTGYQNLTLLIS KAYQRGYGAAGPIIERDWLVELKEGLILLSGGRMGDVGRCLLRGNQALVEECVAFYEA HFPDRYFLELIRTGRQDEETYLHAAVELAEARGLPVVATNDVRFLESDDFDAHEIRVA IHDGFTLDDPKRPRNYSPQQYMRSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEY FLPQFPTGDMTTEDYLVKKAKEGLEERLAFLFPDEEERKKRRPEYDERLDIELQVINQ MGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFL NPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLG HPYGFVDRISKLVPPDPGMTLAKAFEAEPQLPEIYEADEEVRALIDMARKLEGVTRNA GKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVEYAGLVKFDFLGLRTLTIIN WALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTAVFQLESRGMKDLIKRLQ PDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQWQHESLKPVLEPTYG IILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVFEEGAKKNGIDGEL AMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVMTADMDNTEKVV GLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIEAIIDARNQG GYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALKAADQHAK AEAIGQTDMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGHPINQYLKE IERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDRSGRLEVML FTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARGLAISL TDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSDRLLNDL RGLIGSEQVELEFD" misc_feature 269561..273001 /gene="dnaE" /locus_tag="STM0231" /note="DNA polymerase III subunit alpha; Validated; Region: dnaE; PRK05673" /db_xref="CDD:235554" gene 272938..274003 /gene="accA" /locus_tag="STM0232" /db_xref="GeneID:1251750" regulatory 272938..272946 /regulatory_class="minus_35_signal" /gene="accA" /locus_tag="STM0232" /note="putative -35_signal for accA; RegulonDB:STMLTH004537" regulatory 272964..272972 /regulatory_class="minus_10_signal" /gene="accA" /locus_tag="STM0232" /note="putative -10_signal for accA; RegulonDB:STMLTH004537" regulatory 273034..273039 /regulatory_class="ribosome_binding_site" /gene="accA" /locus_tag="STM0232" /note="putative RBS for accA; RegulonDB:STMS1H000598" CDS 273044..274003 /gene="accA" /locus_tag="STM0232" /EC_number="6.4.1.2" /note="acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha. (SW:ACCA_SALTY)" /codon_start=1 /transl_table=11 /product="acetylCoA carboxylase, carboxytransferase component, alpha subunit" /protein_id="NP_459237.1" /db_xref="GeneID:1251750" /translation="MSLNFLDFEQPIAELEAKIDSLTAVSRQDEKLDINIDEEVHRLR EKSVELTRKIFADLGAWQVAQLARHPQRPYTLDYVRLAFDEFDELAGDRAYADDKAIV GGIARLEGRPVMIIGHQKGRETKEKIRRNFGMPAPEGYRKALRLMEMAERFNMPIITF IDTPGAYPGVGAEERGQSEAIARNLREMSRLNVPVICTVIGEGGSGGALAIGVGDKVN MLQYSTYSVISPEGCASILWKSADKAPLAAEAMGIIAPRLKELKLIDSIIPEPLGGAH RNPEAMAASLKAQLLEDLADLDVLSTDDLKNRRYQRLMSYGYA" misc_feature 273053..273997 /gene="accA" /locus_tag="STM0232" /note="Acetyl-CoA carboxylase alpha subunit [Lipid transport and metabolism]; Region: AccA; COG0825" /db_xref="CDD:440587" gene 274177..275947 /locus_tag="STM0233" /db_xref="GeneID:1251751" regulatory 274177..274182 /regulatory_class="ribosome_binding_site" /locus_tag="STM0233" /note="putative RBS for STM0233; RegulonDB:STMS1H000599" CDS 274184..275947 /locus_tag="STM0233" /codon_start=1 /transl_table=11 /product="putative endochitinase" /protein_id="NP_459238.1" /db_xref="GeneID:1251751" /translation="MGLQKTLALSAVAAGIMLSLSGAQAAPLLSSSEPMTINASDLAA KEKALTDFPLMEAVKSSIQTLDNSAVEQIEPGRAANPANVKRVESILKEADWDYLFPM RAPEYTYSNFLKAIGKFPAVCGTYTDGRDSDAICRKTLATMFAHFAQETGGHESWRDI PEWRQALVYLREVGWTEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQL SYNYNYGPFSDAMYGDVRPLLDKPELVADTWMNLASAVFFFVYPQPPKPSMLHVIDGT WQPNDRDKANGLVSGFGVTIQIINGGVECGGADENAQSLNRIAYYKEFANYLKVPVPA DEVLGCKKMKQFDEGGAGALPIYWEQDWGWSADTADGKTYSCQLVGYQTPYTAFKEGD YTKCVQHYFNVNVVDDNGTTEPDVTPTPAPVTDENVAPVARIAGPVGAVEAGSPVSLS AEGSTDANGDKLTYTWMSQDGKTLSGQDKAVVIFNAPDVTQNTQYVVNLTVSDGTLSS TAVYTLNVKAKAAAADDEDKTTSYPAWSSSQKWNPGDIVNSNGALYQCKPFPEGSWCN VAPAYYEPGVGIAWADAWNAL" misc_feature 274454..275203 /locus_tag="STM0233" /note="Glycoside hydrolase family 19, chitinase domain; Region: chitinase_GH19; cd00325" /db_xref="CDD:381595" misc_feature order(274628..274633,274688..274690,274694..274702, 274829..274843,274847..274852,274955..274957, 275078..275083,275093..275095,275120..275122, 275132..275134) /locus_tag="STM0233" /note="sugar binding site [chemical binding]; other site" /db_xref="CDD:381595" misc_feature <274859..275710 /locus_tag="STM0233" /note="Chitodextrinase [Carbohydrate transport and metabolism]; Region: COG3979" /db_xref="CDD:443178" misc_feature <275828..275944 /locus_tag="STM0233" /note="N-acetylglucosamine-binding protein GbpA; Region: PRK13211" /db_xref="CDD:237309" gene 276012..278164 /gene="ldcC" /locus_tag="STM0234" /db_xref="GeneID:1251752" regulatory 276012..276017 /regulatory_class="ribosome_binding_site" /gene="ldcC" /locus_tag="STM0234" /note="putative RBS for ldcC; RegulonDB:STMS1H000600" CDS 276023..278164 /gene="ldcC" /locus_tag="STM0234" /EC_number="4.1.1.18" /note="similar to E. coli lysine decarboxylase 2, constitutive (AAC73297.1); Blastp hit to AAC73297.1 (713 aa), 91% identity in aa 1 - 712" /codon_start=1 /transl_table=11 /product="lysine decarboxylase 2, constitutive" /protein_id="NP_459239.1" /db_xref="GeneID:1251752" /translation="MNIIAIMGPHGVYYKDEPIKELERALQSLGFQIIWPQNSVDLLK FIEHNPRICGVIFDWDEYSLDLCSEINQLNEYLPLYAFINTNSTLDVSVHDMRMALWF FEYALGLAEDIATRIHQYTNEYLDNITPPFTKALFTYAKEGKYTFCTPGHMAGTAYQK SPPGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTN GTSTSNKIVGMYAAPAGSTLLIDRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIP RREFTRASIESKIEETPQAQWPVHAVITNSTYDGLLYNTNWIKQMLDVPSIHFDSAWV PYTHFHPIYQGKSGMSGDRVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEA FMMHTSTSPSYPIVASIETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDSWF FDIWQPEEVDEAECWPVTPGETWHGFTDADDDHMFLDPVKVTILTPGMDEQGNMSEEG IPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAYDLNLRV KNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQHDLPGLMLRAFEVLPEMIMTPHQAW QRQIKGEVETVALDQLPGRVSANMILPYPPGVPLLMPGERITQQSRAVLDFLLMLCSI GQHYPGFETDIHGAKRNEDGVYQVRVLKHAC" misc_feature 276023..278161 /gene="ldcC" /locus_tag="STM0234" /note="lysine decarboxylase; Region: PRK15399" /db_xref="CDD:185297" gene 278209..278609 /gene="yaeR" /locus_tag="STM0235" /db_xref="GeneID:1251753" regulatory 278209..278214 /regulatory_class="ribosome_binding_site" /gene="yaeR" /locus_tag="STM0235" /note="putative RBS for yaeR; RegulonDB:STMS1H000601" CDS 278220..278609 /gene="yaeR" /locus_tag="STM0235" /note="similar to E. coli orf, hypothetical protein (AAC73298.1); Blastp hit to AAC73298.1 (138 aa), 88% identity in aa 10 - 138" /codon_start=1 /transl_table=11 /product="putative lactoylglutathione lyase" /protein_id="NP_459240.1" /db_xref="GeneID:1251753" /translation="MLGLKQVHHIAIIATDYAVSKAFYCDILGFDLLSEVWREERDSW KGDLALNGQYVIELFSFPFPPARPSRPEACGLRHLAFSVENVENAVAHLEKHQVKCEP IRIDPYTGKRFTFFNDPDGLPLELYEQ" misc_feature 278220..278606 /gene="yaeR" /locus_tag="STM0235" /note="VOC family protein; Region: PRK11478" /db_xref="CDD:183156" gene 278665..279964 /gene="mesJ" /locus_tag="STM0236" /db_xref="GeneID:1251754" regulatory 278665..278670 /regulatory_class="ribosome_binding_site" /gene="mesJ" /locus_tag="STM0236" /note="putative RBS for mesJ; RegulonDB:STMS1H000602" CDS 278672..279964 /gene="mesJ" /locus_tag="STM0236" /note="similar to E. coli cell cycle protein (AAC73299.1); Blastp hit to AAC73299.1 (432 aa), 76% identity in aa 2 - 427" /codon_start=1 /transl_table=11 /product="cell cycle protein" /protein_id="NP_459241.1" /db_xref="GeneID:1251754" /translation="MTTLTLNTSLLSSRRILAAFSGGLDSTVLLHQLVLWRERHPDVT LRAIHIHHGLSPHADSWVRHCETVCERWQVPLVVERVTLADNGLGIEAHAREARYRAF AQTLLPGEVLATAQHLDDQCETFLLALKRGSGPAGLSAMGERSPFAGTLLLRPLLRET RKTLEQWAVRHGLCWIEDESNQDDAYDRNFLRLRALPLLQQRWPHFPAAVARSATLCA EQERLLDELLASDLTDCITAEGTLRLSPLMSMSDVRRAAILRRWLAMRNAPMPSRDAL ERIWQEVALARDDASPCLRFGDHEIRRYQSQLWWIKSVAGQHETTVAWPVWQTPLALP AGLGTVQLVPGGELRRPREEESVSIRFKAPGVLHIVGRNGGRKLKKIWQEQGIPPWRR DTTPLLFYGETLIAAAGVFVTREGAAEDKEGVSLVWHA" misc_feature 278711..279961 /gene="mesJ" /locus_tag="STM0236" /note="tRNA(Ile)-lysidine synthetase; Provisional; Region: tilS; PRK10660" /db_xref="CDD:182626" gene complement(280048..280321) /gene="rof" /locus_tag="STM0237" /db_xref="GeneID:1251755" CDS complement(280048..280308) /gene="rof" /locus_tag="STM0237" /note="similar to E. coli orf, hypothetical protein (AAC73300.1); Blastp hit to AAC73300.1 (86 aa), 81% identity in aa 1 - 86" /codon_start=1 /transl_table=11 /product="modulator of Rho-dependent transcription termination" /protein_id="NP_459242.1" /db_xref="GeneID:1251755" /translation="MSMNETYQPINCDDYDSLELACMHHLILTLTLKDGEVLQAKAND LILRKNVEYLLAEVSGESCELRLDKIASFSHPEIGTVVVSES" misc_feature complement(280051..280302) /gene="rof" /locus_tag="STM0237" /note="Rho-binding antiterminator; Provisional; Region: PRK11625" /db_xref="CDD:183241" gene complement(280295..280517) /gene="yaeP" /locus_tag="STM0238" /db_xref="GeneID:1251756" CDS complement(280295..280513) /gene="yaeP" /locus_tag="STM0238" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459243.1" /db_xref="GeneID:1251756" /translation="MLTGGHVEKYCELVRKRYAEIASGDLGYVPDALGCVLKVLNEVA ADSALSESVREKAAYAAANLLVSDYVNE" misc_feature complement(280298..280495) /gene="yaeP" /locus_tag="STM0238" /note="hypothetical protein; Provisional; Region: PRK04964" /db_xref="CDD:179901" regulatory complement(280316..280321) /regulatory_class="ribosome_binding_site" /gene="yaeP" /locus_tag="STM0238" /note="putative RBS for rof; RegulonDB:STMS1H000603" regulatory complement(280512..280517) /regulatory_class="ribosome_binding_site" /gene="yaeP" /locus_tag="STM0238" /note="putative RBS for yaeP; RegulonDB:STMS1H000604" gene 280680..281238 /gene="yaeQ" /locus_tag="STM0239" /db_xref="GeneID:1251757" regulatory 280680..280685 /regulatory_class="ribosome_binding_site" /gene="yaeQ" /locus_tag="STM0239" /note="putative RBS for yaeQ; RegulonDB:STMS1H000605" CDS 280693..281238 /gene="yaeQ" /locus_tag="STM0239" /note="hypothetical 20.8 Kda protein in mesJ-cutF intergenic region. (SW:YAEQ_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459244.1" /db_xref="GeneID:1251757" /translation="MALKATIYKAVVNVADLDRNRFLDAALTLARHPSETQERMMLRL LAWIKYADERLQFTRGLSAEDEPEAWLRNDHLGIDLWIELGLPDERRIKKACTQASDV ALFAYNSRAAQIWWQQHQSKCAQFANLSVWYLDDGQLAQLSEFADRTMTLQATIQDGA IWLSDARNNLEIQLTAWQQPS" misc_feature 280696..281232 /gene="yaeQ" /locus_tag="STM0239" /note="Uncharacterized conserved protein YaeQ, suppresses RfaH defect [Function unknown]; Region: YaeQ; COG4681" /db_xref="CDD:443717" gene 281220..281657 /gene="yaeJ" /locus_tag="STM0240" /db_xref="GeneID:1251758" regulatory 281220..281225 /regulatory_class="ribosome_binding_site" /gene="yaeJ" /locus_tag="STM0240" /note="putative RBS for yaeJ; RegulonDB:STMS1H000606" CDS 281235..281657 /gene="yaeJ" /locus_tag="STM0240" /note="similar to E. coli orf, hypothetical protein (AAC73302.1); Blastp hit to AAC73302.1 (140 aa), 85% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="putative-tRNA hydrolase domain protein" /protein_id="NP_459245.1" /db_xref="GeneID:1251758" /translation="MIAISRTVSIADNELEITAIRAQGAGGQHVNKTSSAIHLRFDIR ASGLPEYYKQRLLTASHHLISDDGVIIIKAQEFRSQELNREAAIARLVAVIKELTAEQ KSRRATRPTRASKERRLSSKAQKSSVKALRGKVRRPLD" misc_feature 281235..281642 /gene="yaeJ" /locus_tag="STM0240" /note="aminoacyl-tRNA hydrolase; Region: PRK09256" /db_xref="CDD:181730" gene 281689..282394 /gene="cutF" /locus_tag="STM0241" /note="pseudogene; frameshift relative to E. coli cutF (SW:CUTF_ECOLI); copper homeostasis protein" /pseudo /db_xref="GeneID:1251759" gene complement(282468..284202) /gene="proS" /locus_tag="STM0242" /db_xref="GeneID:1251760" CDS complement(282468..284186) /gene="proS" /locus_tag="STM0242" /EC_number="6.1.1.15" /note="similar to E. coli proline tRNA synthetase (AAC73305.1); Blastp hit to AAC73305.1 (572 aa), 95% identity in aa 1 - 572" /codon_start=1 /transl_table=11 /product="proline tRNA synthetase" /protein_id="NP_459246.1" /db_xref="GeneID:1251760" /translation="MRTSQYLLSTLKETPADAEVISHQLMLRAGMIRKLASGLYTWLP TGLRVLKKVENIVREEMNNAGAIEVSMPVVQPADLWQESGRWEQYGPELLRFVDRGER PFVLGPTHEEVITDLVRNELSSYKQLPLNFFQIQTKFRDEVRPRFGVMRSREFLMKDA YSFHTSQESLQETYDAMYAAYSRIFSRMGLDFRAVQADTGSIGGNASHEFQVLAQSGE DDIVFSDVSDYAANIELAEAIAPQTPRAAATQEMTLVDTPNAKTIAELVEQFNLPIEK TVKTLLVKAVKDSKSPLVALLVRGDHELNEVKAEKLPHVASPLTFATEEEIRAVINAG PGSLGPVNMPIPVIIDRTVAAMSDFAAGANIDGKHYFGINWDRDVATPVVADIRNVVA GDPSPDGQGTLLIKRGIEVGHIFQLGTKYSEALKASVQGEDGRNQILTMGCYGIGVTR VVAAAIEQNFDERGIVWPDAIAPFQVAILPMNMHKSFRVQELAEKLYSELRAQGIEVL MDDRKERPGVMFADMELIGIPHTIVIGDRNLDNDDIEYKYRRSGEKSLIKTGDIVDYL VKAIKG" misc_feature complement(282474..284186) /gene="proS" /locus_tag="STM0242" /note="prolyl-tRNA synthetase; Provisional; Region: PRK09194" /db_xref="CDD:236405" regulatory complement(284197..284202) /regulatory_class="ribosome_binding_site" /gene="proS" /locus_tag="STM0242" /note="putative RBS for proS; RegulonDB:STMS1H000608" gene complement(284297..285012) /gene="yaeB" /locus_tag="STM0243" /db_xref="GeneID:1251761" CDS complement(284297..285004) /gene="yaeB" /locus_tag="STM0243" /note="similar to E. coli orf, hypothetical protein (AAC73306.1); Blastp hit to AAC73306.1 (235 aa), 89% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="putative regulator" /protein_id="NP_459247.1" /db_xref="GeneID:1251761" /translation="MSSFQFEQIGVIRSPYKEKFAVPRQPGLVKSACGELHLIAPYNQ ADAVRGLEAFSHLWVLFVFHQTMDGGWRPTVRPPRLGGNARMGVFATRSTFRPNPIGM SLVALKGIECRKESVILKLGSLDLVDGTPVVDIKPYLPFAEALPDAAASYAQQAPIAE MPVSFTAEVAQQLTTLERRYPQLRTFICDVLAQDPRPAYRKGEETGKTYAVWLHDFNV RWRVVNSGFEVFALEPR" misc_feature complement(284516..284998) /gene="yaeB" /locus_tag="STM0243" /note="tRNA (Thr-GGU) A37 N6-methylase [Translation, ribosomal structure and biogenesis]; Region: TrmO; COG1720" /db_xref="CDD:441326" misc_feature complement(order(284591..284608,284705..284707, 284711..284713,284717..284719,284729..284746, 284819..284821,284831..284833,284852..284854, 284858..284866,284978..284980)) /gene="yaeB" /locus_tag="STM0243" /note="homodimer interaction site [polypeptide binding]; other site" /db_xref="CDD:187753" misc_feature complement(order(284615..284617,284630..284632, 284699..284701,284705..284707,284729..284731, 284813..284818,284822..284824)) /gene="yaeB" /locus_tag="STM0243" /note="cofactor binding site [active]" /db_xref="CDD:187753" misc_feature complement(284339..284530) /gene="yaeB" /locus_tag="STM0243" /note="TrmO C-terminal domain; Region: TrmO_C; pfam18389" /db_xref="CDD:465738" gene complement(285001..285416) /gene="rcsF" /locus_tag="STM0244" /db_xref="GeneID:1251762" CDS complement(285001..285405) /gene="rcsF" /locus_tag="STM0244" /note="overexpression confers mucoid phenotype; increases capsule synthesis; similar to E. coli regulator in colanic acid synthesis; interacts with RcsB (AAC73307.1); Blastp hit to AAC73307.1 (134 aa), 91% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="regulator in colanic acid synthesis" /protein_id="NP_459248.1" /db_xref="GeneID:1251762" /translation="MRALPICLLALMLGGCSMLSRSPVEPVQSTATPPKAEPEKPKAP RAAPVRIYTNAEDLVGKPFRDLGEVSGESCQATNQDSPPNIPTARKRMQINASKMKAN AVLLHSCEITSGTPGCYRQAVCIGSALNISAK" misc_feature complement(285007..285405) /gene="rcsF" /locus_tag="STM0244" /note="Rcs stress response system protein RcsF; Region: rcsF; PRK10781" /db_xref="CDD:182725" regulatory complement(285007..285012) /regulatory_class="ribosome_binding_site" /gene="rcsF" /locus_tag="STM0244" /note="putative RBS for yaeB; RegulonDB:STMS1H000609" regulatory complement(285411..285416) /regulatory_class="ribosome_binding_site" /gene="rcsF" /locus_tag="STM0244" /note="putative RBS for rcsF; RegulonDB:STMS1H000610" gene complement(285524..286351) /gene="yaeC" /locus_tag="STM0245" /db_xref="GeneID:1251763" CDS complement(285524..286339) /gene="yaeC" /locus_tag="STM0245" /note="similar to E. coli putative lipoprotein (AAC73308.1); Blastp hit to AAC73308.1 (271 aa), 96% identity in aa 1 - 271" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_459249.1" /db_xref="GeneID:1251763" /translation="MAFKFKTFAAVGALIGSLALAGCGQDEKDPNHIKVGVIVGAEQQ VAEVAQKVAKEKYGLDVELVTFNDYVLPNEALSKGDIDANAFQHKPYLDQQIKDRGYK LVSVGKTFVYPIAGYSKKIKSLDELKDGSQVAVPNDPTNLGRSLLLLQKVGLIKLKDG VGLLPTSLDIVENPKNLKIVELEAPQLPRSLDDAQIALAVINTTYASQIGLTPAKDGI FVEDKDSPYVNLIVTREDNKDAENVKKFVQAYQSDEVYEAANKVFNGGAVKGW" misc_feature complement(285527..286339) /gene="yaeC" /locus_tag="STM0245" /note="D-methionine ABC transporter substrate-binding protein MetQ; Region: metQ; PRK11063" /db_xref="CDD:182939" misc_feature complement(order(285653..285655,285728..285730, 285734..285736,285908..285910,285917..285919, 286004..286006,286067..286069,286076..286084, 286133..286135)) /gene="yaeC" /locus_tag="STM0245" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270316" regulatory complement(286346..286351) /regulatory_class="ribosome_binding_site" /gene="yaeC" /locus_tag="STM0245" /note="putative RBS for yaeC; RegulonDB:STMS1H000611" gene complement(286378..287044) /gene="yaeE" /locus_tag="STM0246" /db_xref="GeneID:1251764" CDS complement(286378..287031) /gene="yaeE" /locus_tag="STM0246" /note="similar to E. coli putative transport system permease protein (AAC73309.1); Blastp hit to AAC73309.1 (217 aa), 93% identity in aa 1 - 217" /codon_start=1 /transl_table=11 /product="putative ABC superfamily (membrane) transport protein" /protein_id="NP_459250.1" /db_xref="GeneID:1251764" /translation="MSEAMMWLLVRGVWETLAMTFVSGFFGFVIGLPVGVLLYVTRPG QIMENARLYRSLSAVVNIFRSIPFIILLVWMIPFTRIIVGTSIGLQAAIVPLTVGAAP FIARMVENALLEIPAGLIEASRAMGATPLQIVRKILLPEALPGLVNAATITLITLVGY SAMGGAVGAGGLGQIGYQYGYIGYNATVMNTVLVLLVVLVYLIQLSGDRIVRAVTHK" misc_feature complement(286381..287031) /gene="yaeE" /locus_tag="STM0246" /note="D-methionine ABC transporter permease MetI; Region: PRK10782" /db_xref="CDD:182726" misc_feature complement(order(286540..286557,286804..286848)) /gene="yaeE" /locus_tag="STM0246" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(286609..286611,286621..286626, 286642..286680)) /gene="yaeE" /locus_tag="STM0246" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(287024..288063) /gene="abc" /locus_tag="STM0247" /db_xref="GeneID:1251765" CDS complement(287024..288055) /gene="abc" /locus_tag="STM0247" /note="similar to E. coli ATP-binding component of a transporter (AAC73310.1); Blastp hit to AAC73310.1 (343 aa), 95% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="putative ABC superfamily (atp_bind) transport system" /protein_id="NP_459251.1" /db_xref="GeneID:1251765" /translation="MIKLSNITKVFQQGTRTIQALNNVSLHVPAGQIYGVIGASGAGK STLIRCVNLLERPTEGSVQVGGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGN VALPLELDNTPKEEIKRRVTELLDLVGLGDKHDSYPANLSGGQKQRVAIARALASNPK VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGE LIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQARLKASPETDSVPMLRMEFTGQ SVDAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQEETQAAIAWLQDHH VKVEVLGYV" misc_feature complement(287027..288055) /gene="abc" /locus_tag="STM0247" /note="DL-methionine transporter ATP-binding subunit; Provisional; Region: metN; PRK11153" /db_xref="CDD:236863" regulatory complement(287039..287044) /regulatory_class="ribosome_binding_site" /gene="yaeE" /locus_tag="STM0246" /note="putative RBS for yaeE; RegulonDB:STMS1H000612" regulatory complement(288058..288063) /regulatory_class="ribosome_binding_site" /gene="abc" /locus_tag="STM0247" /note="putative RBS for abc; RegulonDB:STMS1H000613" gene 288230..288811 /gene="yaeD" /locus_tag="STM0248" /db_xref="GeneID:1251766" regulatory 288230..288235 /regulatory_class="ribosome_binding_site" /gene="yaeD" /locus_tag="STM0248" /note="putative RBS for yaeD; RegulonDB:STMS1H000614" CDS 288245..288811 /gene="yaeD" /locus_tag="STM0248" /note="similar to E. coli putative phosphatase (AAC73311.1); Blastp hit to AAC73311.1 (191 aa), 94% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="putative dehydratase" /protein_id="NP_459252.1" /db_xref="GeneID:1251766" /translation="MAKFVPAIFLDRDGTINVDHGYVHEIDAFEFIDGVIDAMRELKK MGYALVVVTNQSGIARGKFTEAQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSIEE FRQVCDCRKPHPGMLISARDFLHIDMAASYMVGDKLEDMQAAAAANVGTKVLVRTGKP VTAEAENAADWVLNSLADLPSAIKKQQK" misc_feature 288257..288784 /gene="yaeD" /locus_tag="STM0248" /note="D,D-heptose 1,7-bisphosphate phosphatase; Region: GmhB_yaeD; TIGR00213" /db_xref="CDD:129317" gene 289190..290733 /gene="rrsH" /locus_tag="STM0249" /db_xref="GeneID:1251767" rRNA 289190..290733 /gene="rrsH" /locus_tag="STM0249" /product="16S ribosomal RNA" /db_xref="GeneID:1251767" gene 290801..290874 /gene="ileV" /locus_tag="STM0250" /db_xref="GeneID:1251768" tRNA 290801..290874 /gene="ileV" /locus_tag="STM0250" /product="tRNA-Ile" /db_xref="GeneID:1251768" gene 290987..291059 /gene="alaV" /locus_tag="STM0251" /db_xref="GeneID:1251769" tRNA 290987..291059 /gene="alaV" /locus_tag="STM0251" /product="tRNA-Asx" /db_xref="GeneID:1251769" gene 291245..294337 /gene="rrlH" /locus_tag="STM0252" /db_xref="GeneID:1251770" rRNA 291245..294337 /gene="rrlH" /locus_tag="STM0252" /product="23S ribosomal RNA" /db_xref="GeneID:1251770" gene 294520..294641 /gene="rrfH" /locus_tag="STM0253" /db_xref="GeneID:1251771" rRNA 294520..294641 /gene="rrfH" /locus_tag="STM0253" /product="5S ribosomal RNA" /db_xref="GeneID:1251771" gene 294839..294912 /gene="aspU" /locus_tag="STM0254" /db_xref="GeneID:1251772" tRNA 294839..294912 /gene="aspU" /locus_tag="STM0254" /product="tRNA-Val" /db_xref="GeneID:1251772" gene 295060..295873 /gene="yafB" /locus_tag="STM0255" /db_xref="GeneID:1251773" regulatory 295060..295065 /regulatory_class="ribosome_binding_site" /gene="yafB" /locus_tag="STM0255" /note="putative RBS for yafB; RegulonDB:STMS1H000620" CDS 295070..295873 /gene="yafB" /locus_tag="STM0255" /EC_number="1.1.1.-" /note="similar to E. coli putative aldose reductase (AAC73312.1); Blastp hit to AAC73312.1 (267 aa), 92% identity in aa 1 - 267" /codon_start=1 /transl_table=11 /product="2,5-diketo-D-gluconate reductase B" /protein_id="NP_459253.1" /db_xref="GeneID:1251773" /translation="MTIPAFGLGTFRLKDDVVIASVKTALELGYRAVDTAQIYDNEAA VGQAIAESGVPRNELYITTKIWIENLSKDKLIPSLKESLKKLRTDYVDLTLIHWPSPG DAVSVEEFMQALLEAKKQGLTREIGISNFTIPLMEKAIAAVGADNIATNQIELSPYLQ NRKVVDWAKAHGIHITSYMTLAYGKALKDEVIARIAAKHNATPAQVILAWAMGEGYSV IPSSTRRENLASSLLAQDLHLDAEDKNAIAALDCNDRLVSPEGLAPAWD" misc_feature 295070..295870 /gene="yafB" /locus_tag="STM0255" /note="2,5-didehydrogluconate reductase DkgB; Region: dkgB; PRK11172" /db_xref="CDD:183012" misc_feature order(295094..295102,295169..295171,295181..295186, 295259..295261,295358..295363,295454..295459, 295523..295525,295601..295621,295643..295645, 295679..295681,295724..295741,295748..295750, 295757..295762) /gene="yafB" /locus_tag="STM0255" /note="putative active site [active]" /db_xref="CDD:381365" misc_feature order(295169..295171,295184..295186,295259..295261, 295358..295360) /gene="yafB" /locus_tag="STM0255" /note="catalytic tetrad [active]" /db_xref="CDD:381365" gene complement(295894..296819) /gene="yafC" /locus_tag="STM0256" /db_xref="GeneID:1251774" CDS complement(295894..296808) /gene="yafC" /locus_tag="STM0256" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73313.1); Blastp hit to AAC73313.1 (304 aa), 90% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459254.1" /db_xref="GeneID:1251774" /translation="MKATSEELAIFVAVVESGSFSRAAEQLGQANSAVSRAVKKLEMK LGVSLLNRTTRQLSLTEEGERYFRRVQQILQEMAAAETEIMESRNTPRGLLRIDAATP VMLHFLMPLIKPFRERYPEITLSLVSSETFINLIERKVDVAIRAGTLTDSSLRARPLF TSYRKIIASPDYIARFGKPETVEELKRHLCLGFSEPVSLNTWPIACSDGQLHEIKCGI SSNSGETLKQLCLNGNGIACLSDYMIDKEIARGELVELLADKRLPVEMPFSAVYYSDR AVSTRIRAFIDFLSEYIRTAPAGAVKEG" misc_feature complement(295930..296808) /gene="yafC" /locus_tag="STM0256" /note="DNA-binding transcriptional regulator YafC; Region: trans_reg_YafC; NF040888" /db_xref="CDD:468824" regulatory complement(296814..296819) /regulatory_class="ribosome_binding_site" /gene="yafC" /locus_tag="STM0256" /note="putative RBS for yafC; RegulonDB:STMS1H000621" gene 296901..298088 /locus_tag="STM0257" /db_xref="GeneID:1251775" regulatory 296901..296906 /regulatory_class="ribosome_binding_site" /locus_tag="STM0257" /note="putative RBS for STM0257; RegulonDB:STMS1H000622" CDS 296913..298088 /locus_tag="STM0257" /note="similar to E. coli putative transport protein (AAC74729.1); Blastp hit to AAC74729.1 (389 aa), 41% identity in aa 7 - 378" /codon_start=1 /transl_table=11 /product="putative drug efflux protein (perhaps for chloramphenicol)" /protein_id="NP_459255.1" /db_xref="GeneID:1251775" /translation="MPLALFALTISAFAIGTTEFVIVGLVPTIAQQLAISLPSAGMLV SIYALGVAIGAPVLTALTGRLPRKQLLVALMVLFTAGNLLAWQAPGYMTLIVARLLTG LAHGVFFSIGSTIATSLVPKEKAASAIAIMFGGLTVALVTGVPLGTFIGQHFGWRETF LAVSLLGVIALMSSQLLIPANIPGRAAASIRDQVKVLTHPRLLLIYAVTALGYGGVFT AFTFLAPMMQDLAGFSPAAVSWILLGYGVSVAIGNIWGGKLADKHGAVPALKFIFAAL FVLLMVFQVTASTQYAALATILVMGVFAFGNVPGLQVYVVQKAEQFTPNAVDVASGLN IAAFNIGIALGSVIGGQTVEHYGLAQTPWIGALIVLVAFLLMGVSGRLDKPVRIALE" misc_feature 296925..298040 /locus_tag="STM0257" /note="Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily; Region: MFS_NepI_like; cd17324" /db_xref="CDD:340882" misc_feature order(296955..296960,296967..296972,296979..296981, 297075..297077,297225..297230,297234..297242, 297249..297251,297309..297311,297318..297323, 297330..297332,297537..297539,297546..297551, 297558..297566,297573..297575,297657..297659, 297669..297671,297819..297824,297834..297836, 297846..297848,297903..297905,297912..297917, 297924..297929,297936..297938) /locus_tag="STM0257" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340882" gene 298241..299020 /gene="yafD" /locus_tag="STM0258" /db_xref="GeneID:1251776" CDS 298241..299020 /gene="yafD" /locus_tag="STM0258" /note="similar to E. coli orf, hypothetical protein (AAC73314.1); Blastp hit to AAC73314.1 (266 aa), 96% identity in aa 8 - 266" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459256.1" /db_xref="GeneID:1251776" /translation="MRYVAGQPAERILPPGSFASIGQALPAGEPLSNEERIRILVWNI FKQQRAEWLSVLKNYGKDAHLVLLQEAQTTPELVQFATANYLAADQVPAFVLPQHPSG VMTLSAAHPVYCCPLREREPILRLAKSALVTVYPLPDTRLLMVVNVHAVNFSLGVDVY SKQLLPIGDQIAHHSGPVIMAGDFNAWSRPRMNALYRFAREMSLRQVRFTDDQRRRAF GRPLDFVFYRGLNVNEASVLVTRASDHNPLLVEFSPGKPEQ" misc_feature 298241..299008 /gene="yafD" /locus_tag="STM0258" /note="endonuclease/exonuclease/phosphatase family protein; Region: PRK05421" /db_xref="CDD:235454" gene 299083..299868 /gene="yafE" /locus_tag="STM0259" /db_xref="GeneID:1251777" regulatory 299083..299088 /regulatory_class="ribosome_binding_site" /gene="yafE" /locus_tag="STM0259" /note="putative RBS for yafE; RegulonDB:STMS1H000623" CDS 299098..299868 /gene="yafE" /locus_tag="STM0259" /note="similar to E. coli putative biotin synthesis protein (AAC73315.1); Blastp hit to AAC73315.1 (207 aa), 71% identity in aa 3 - 206" /codon_start=1 /transl_table=11 /product="putative methyltransferase in menaquinone/biotin biosynthesis" /protein_id="NP_459257.1" /db_xref="GeneID:1251777" /translation="MTTHSHHDNVEKQFGSQANAYLHSAVHAAGRDLARLAQRLSDFS HASVLDMGCGAGHASFVAAQHANSVVAYDLSASMLEVVAGAAEERHLSNITLRQGYAE KLPFEDASFEVVISRYSAHHWHDVGQALREVNRVLKPGGVLIIMDVMSPGHPVRDIWL QTVEALRDTSHVRNYSSGEWLAMVNNAMLVTNTVITDRLSLEFRSWVTRMRTPAPLVE AIRLYQASAPVEVKRYFELQDDGSFSSDTIMLEAHKAV" misc_feature 299176..299580 /gene="yafE" /locus_tag="STM0259" /note="Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG [Coenzyme transport and metabolism]; Region: UbiE; COG2226" /db_xref="CDD:441828" gene complement(299924..301291) /gene="dniR" /locus_tag="STM0260" /db_xref="GeneID:1251778" CDS complement(299924..301291) /gene="dniR" /locus_tag="STM0260" /EC_number="3.2.1.-" /note="similar to E. coli transcriptional regulator for nitrite reductase (cytochrome c552) (AAC73316.1); Blastp hit to AAC73316.1 (452 aa), 91% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="transcriptional regulator for nitrite reductase (cytochrome c552)" /protein_id="NP_459258.1" /db_xref="GeneID:1251778" /translation="MKAKAILLASVLLVGCQTSQNTGNVQQHAQSLSAAGQGEAGKFT SQARWMDDGTSIAPDQDLWAFIGDELKMGIPENSRIREQKQKYLRNKSYLHDVTLRAE PYMYWIAGQVKKRNMPMELVLLPIVESAFDPHATSGANAAGIWQIIPSTGRNYGLKQT RNYDARRDVVASTTAALDMMQRLNKMFDGDWLLTVAAYNSGEGRVMRAIKANKARGKP TDFWSLSLPRETKLYVPKMLALSEILKNSKRYGVRLPTTDESRALARVRLNSPVEMAQ VADMAGMSISKLKTFNAGVKGSTLGVSGPQYVMVPKKHAEQLRESLASGEIDAVQSQL IADNTPLNSRSYKVRSGDTLSGIASRLGVSTKDLQQWNNLRGSRLKIGQSLTVGAGSS AQRLANNSDSITYRVRKGDSLSSIARRHGVNIKDVMRWNHDTDNLQPGDQLTLFVKDN STPDS" misc_feature complement(299927..301291) /gene="dniR" /locus_tag="STM0260" /note="membrane-bound lytic murein transglycosylase D; Provisional; Region: mltD; PRK10783" /db_xref="CDD:182727" gene complement(301363..302128) /gene="gloB" /locus_tag="STM0261" /db_xref="GeneID:1251779" CDS complement(301363..302118) /gene="gloB" /locus_tag="STM0261" /EC_number="3.1.2.6" /note="similar to E. coli probable hydroxyacylglutathione hydrolase (AAC73317.1); Blastp hit to AAC73317.1 (251 aa), 78% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="hydroxyacylglutathione hydrolase" /protein_id="NP_459259.1" /db_xref="GeneID:1251779" /translation="MNLNSIPAFQDNYIWVLTNDEGRCVIVDPGEAAPVLKAIAEHKW MPEAIFLTHHHHDHVGGVKELLQHFPQMTVYGPAETQDKGATHLVGDGDTIRVLGEKF TLFATPGHTLGHVCYFSRPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKINSLPDDTL ICCAHEYTLANIKFALSILPHDSFINEYYRKVKELRVKKQMTLPVILKNERKINLFLR TEDIDLINEINKETILQQPEARFAWLRSKKDTF" misc_feature complement(301366..302118) /gene="gloB" /locus_tag="STM0261" /note="hydroxyacylglutathione hydrolase; Provisional; Region: PRK10241" /db_xref="CDD:182327" regulatory complement(302123..302128) /regulatory_class="ribosome_binding_site" /gene="gloB" /locus_tag="STM0261" /note="putative RBS for gloB; RegulonDB:STMS1H000624" gene 302140..302875 /gene="yafS" /locus_tag="STM0262" /db_xref="GeneID:1251780" regulatory 302140..302145 /regulatory_class="ribosome_binding_site" /gene="yafS" /locus_tag="STM0262" /note="putative RBS for yafS; RegulonDB:STMS1H000625" CDS 302153..302875 /gene="yafS" /locus_tag="STM0262" /note="similar to E. coli orf, hypothetical protein (AAC73318.1); Blastp hit to AAC73318.1 (246 aa), 86% identity in aa 7 - 244" /codon_start=1 /transl_table=11 /product="putative SAM-dependent methyltransferase" /protein_id="NP_459260.1" /db_xref="GeneID:1251780" /translation="MKPARLSQTVVAPGCWGELPWGNYYREALEQQLNPWFAKMYGFH LLKIGNLSAEINSEACAVSHQVNVSSQGSPMQVLADPLHLPFADKSVDVCLLAHTLPW CTDPHRLLREADRVLIDDGWLVISGFNPLSLMGLRKLVPVLRKTPPYNSRMFTLMRQL DWLSLLNFEVLHYSRFHVLPWKKQGGRLLNTHIPALGCLQLIVARKRTIPLTLNPLRH NKSKTPIRQTVGATRQYRKPDG" misc_feature <302381..302527 /gene="yafS" /locus_tag="STM0262" /note="Methyltransferase domain; Region: Methyltransf_11; pfam08241" /db_xref="CDD:462406" misc_feature <302402..302689 /gene="yafS" /locus_tag="STM0262" /note="Predicted SAM-depedendent methyltransferase [General function prediction only]; Region: COG4627" /db_xref="CDD:443666" gene complement(302872..303356) /gene="rnhA" /locus_tag="STM0263" /db_xref="GeneID:1251781" CDS complement(302872..303339) /gene="rnhA" /locus_tag="STM0263" /EC_number="3.1.26.4" /note="degrades RNA of DNA-RNA hybrids; ribonuclease HI. (SW:RNH_SALTY)" /codon_start=1 /transl_table=11 /product="RNase HI" /protein_id="NP_459261.1" /db_xref="GeneID:1251781" /translation="MLKQVEIFTDGSCLGNPGPGGYGAILRYRGHEKTFSEGYTLTTN NRMELMAAIVALEALKEHCEVTLSTDSQYVRQGITQWIHNWKKRGWKTAEKKPVKNVD LWKRLDAALGQHQIKWVWVKGHAGHPENERCDELARAAAMNPTQEDSGYQAEA" misc_feature complement(302887..303336) /gene="rnhA" /locus_tag="STM0263" /note="ribonuclease H; Reviewed; Region: rnhA; PRK00203" /db_xref="CDD:178927" misc_feature complement(order(302926..302928,302980..302982, 303130..303132,303196..303198,303205..303213, 303301..303312)) /gene="rnhA" /locus_tag="STM0263" /note="RNA/DNA hybrid binding site [nucleotide binding]; other site" /db_xref="CDD:260010" regulatory complement(303351..303356) /regulatory_class="ribosome_binding_site" /gene="rnhA" /locus_tag="STM0263" /note="putative RBS for rnhA; RegulonDB:STMS1H000626" gene 303403..304134 /gene="dnaQ" /locus_tag="STM0264" /db_xref="GeneID:1251782" CDS 303403..304134 /gene="dnaQ" /locus_tag="STM0264" /EC_number="2.7.7.7" /note="3-5 exonucleolytic proofreading function; DNA polymerase III, epsilon chain. (SW:DP3E_SALTY)" /codon_start=1 /transl_table=11 /product="DNA polymerase III, epsilon subunit" /protein_id="NP_459262.1" /db_xref="GeneID:1251782" /translation="MSTAITRQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLT GNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASF DIGFMDYEFGLLKRDIPKTNTFCKVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRT LHGALLDAQILAEVYLAMTGGQTSMTFAMEGETQRQQGEATIQRIVRQASRLRVVFAS EEELAAHESRLDLVQKKGGSCLWRA" misc_feature 303409..304131 /gene="dnaQ" /locus_tag="STM0264" /note="DNA polymerase III subunit epsilon; Provisional; Region: PRK05711" /db_xref="CDD:235574" misc_feature order(303436..303447,303451..303456,303583..303588, 303595..303600,303694..303699,303703..303711, 303832..303837,303877..303879,303886..303888, 303901..303903) /gene="dnaQ" /locus_tag="STM0264" /note="active site" /db_xref="CDD:99835" misc_feature order(303436..303447,303451..303456,303583..303588, 303595..303600,303694..303699,303703..303708, 303832..303837,303877..303879,303886..303888, 303901..303903) /gene="dnaQ" /locus_tag="STM0264" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:99835" misc_feature order(303436..303438,303442..303444,303709..303711, 303886..303888,303901..303903) /gene="dnaQ" /locus_tag="STM0264" /note="catalytic site [active]" /db_xref="CDD:99835" gene 304278..304351 /gene="aspV" /locus_tag="STM0265" /db_xref="GeneID:1251783" tRNA 304278..304351 /gene="aspV" /locus_tag="STM0265" /product="tRNA-Sec" /db_xref="GeneID:1251783" gene complement(304666..305721) /locus_tag="STM0266" /db_xref="GeneID:1251784" CDS complement(304666..305721) /locus_tag="STM0266" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459263.1" /db_xref="GeneID:1251784" /translation="MDMSLTKPVSAEQPCGPDPEYDPEYLLLFSRAAPQAEAQYGDFV STPEAVNWPEIERDARRLLTRSKDIRVLILLLRSRIQQAGAQGLAEMLTQLAELSVIW SDALHPQLLTGEGASAESIEDASLARSNALAALLDHEGVMADIRGITLSNSAALRLQV RDVERALSAPRPADALAPESVRQQLADLEARGALPLAAFREAQESAERLQVWARETLG DLAPDFSRLRQLLALLPDVVQTTTPEIPPSPAPVPDPAGTVMDNAVPARAEDVPPVNA PPGISLPHNAEPGPIRDRNDALERLRCIRRWFESSEPSSPTIPLLRQAERLVGKRFSE VINEIPVELLEKWDALE" misc_feature complement(304672..305712) /locus_tag="STM0266" /note="Type VI protein secretion system component TssA1/VasJ/EvfE, contains ImpA_N domain [Intracellular trafficking, secretion, and vesicular transport]; Region: TssA1; COG3515" /db_xref="CDD:442737" gene complement(305732..306732) /locus_tag="STM0267" /db_xref="GeneID:1251785" CDS complement(305732..306727) /locus_tag="STM0267" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459264.1" /db_xref="GeneID:1251785" /translation="MTGALNQAQKTPWRYGFLNLMRRVDAQLCDTPAGSIWQPRMEKF RLGQTPTMTFAPREIAQVSWQDGRLHLSLYSLGLWGPNGPLPLHYTELALNRSESRHD PTLVHFSNIFHHRWLTQFWQAWRSAQSAGGGLDKPEHDRFAFYIASLSGQDLRESAES PLSDHVRLAASAHLVRESRNPDGLAATLAHYFSVPFAVKEFALHWITVANDEITRLGT PAQSSVLGNGALIGQAVPDMQYKFRLIIGPLTLEDYLRFLPGGNNLPVLTELVRTFIG FEYCWEIELQLKPHAAPPAVIGGAQRLGWTAWAGKAMHDRPVTGMIFEPEHGLTH" misc_feature complement(305798..306697) /locus_tag="STM0267" /note="type VI secretion protein, VC_A0111 family; Region: VI_chp_1; TIGR03347" /db_xref="CDD:274530" gene complement(306724..308613) /locus_tag="STM0268" /db_xref="GeneID:1251786" CDS complement(306724..308607) /locus_tag="STM0268" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459265.1" /db_xref="GeneID:1251786" /translation="MDPRLLEYYNRELSYLRETGAEFATLHPKIAARLGMQGTDIADP YVERMIEAFSFLSARTQLKIDAEFPRFTQRLLEVVSPNYVTPTPSMAVVKLYPDTQEG DLAKGVTVPRDTAFVSPIPEGENTACQFRSSQDVTLWPLSIEEVRLTAAPPDMPALHR YLPPNIHVAGALRITLRTFGELTFSELAGPARLPFYLCGEERIASHLFELLHTSAVAT LAGEPGHFDGELNVNLQHPVAHEGLEPGQGLLPLAWNVFHGHNLLHEFFACPERFYFF TPTGLSAGLQKVQGNVAEIVILLNRLPPDWLIHQTDAAQFSLFCTPVINLFPRTTTRI EVTHSVTEQHLVVDRTRPLDYEVFSVQEVEGLEAETTRKMIFRPLYHTRNNDEGNHGR YFSLRREPRRSSENARRYGTRTPYTGSEVFLSLVDQHEAPYPENLRHITVTAMVTNRD LPCLIPRNGRDDLTVDAAIPVAGVGLIRPPRPPQPPLAEREMAWRLIRQLSFNYLPLA DLDHRTGGQALRDLLNLFIPAHDSPQSRQVRSLIGCKTTPVTRRLPGSGLLVYGRGVS CELTVDEEGFSGISPYLFGLVLEHYIARHVSINTFSQMTLHSMQRGHVMTWPVRTGQR GSV" misc_feature complement(306736..308607) /locus_tag="STM0268" /note="Type VI secretion system, TssF; Region: T6SS_TssF; pfam05947" /db_xref="CDD:428685" regulatory complement(306727..306732) /regulatory_class="ribosome_binding_site" /locus_tag="STM0267" /note="putative RBS for STM0267; RegulonDB:STMS1H000628" regulatory complement(308608..308613) /regulatory_class="ribosome_binding_site" /locus_tag="STM0268" /note="putative RBS for STM0268; RegulonDB:STMS1H000629" gene complement(308623..309125) /locus_tag="STM0269" /db_xref="GeneID:1251787" CDS complement(308623..309117) /locus_tag="STM0269" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459266.1" /db_xref="GeneID:1251787" /translation="MSTSRFTPANHLLPTLFDRLCDNAPYQKIDRDISVTPVQLKEII RRDLSFLLNTISHEGDIDARRYPQAAASVLNYGLPPLAGSFMYEHKWDDISEAIRRAI IRFEPRLNAATLRVTPLLDKTRQGSYNTLQFEIRGQILTQPYPTEFLVRSALDMELSR ITFF" misc_feature complement(308635..309108) /locus_tag="STM0269" /note="Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]; Region: COG3518" /db_xref="CDD:442740" gene complement(309114..309944) /locus_tag="STM0270" /db_xref="GeneID:1251788" CDS complement(309114..309938) /locus_tag="STM0270" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459267.1" /db_xref="GeneID:1251788" /translation="MKKTDTLPATLSALIQEYSIAEGIQMAEQQVRENPAKALCRHSL FQLLCVAGDWSRALHQLQLCARMEANYTQEARLYRELVRCEMFRHTVFQGEQRPGFLL PQPVWVESLLAALACHDDTGEVDKHRNTALEAITDTGGQWNGGAFDWASDSDSRLGPV LELVTGGVYIWLPFSQIRSLESPQPTRLTDLLWKPVNITLVNGDTHGAWLFTRYSGSE SASDALRLCRETAWQDGPGETTVRALGQKVWLTSHGDISLLDMAHCTFHAQENDGA" misc_feature complement(309126..309917) /locus_tag="STM0270" /note="Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]; Region: ImpE; COG4455" /db_xref="CDD:443553" regulatory complement(309120..309125) /regulatory_class="ribosome_binding_site" /locus_tag="STM0269" /note="putative RBS for STM0269; RegulonDB:STMS1H000630" gene complement(309925..310832) /locus_tag="STM0271" /db_xref="GeneID:1251789" CDS complement(309925..310827) /locus_tag="STM0271" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459268.1" /db_xref="GeneID:1251789" /translation="MKQDMWELRKIQSQGITDNAQYPAGTYIVFTAAAPYIPLFEQHG KDDIALSLVRHEEAWWIVNHSDELCCAVNEQVMEPHHRMRLNDGDTIEWGLSSWCLAR TNDESRPDVSFPQLVQSSESVAEYLDLDWFKQQQLNPQNPFDIIPVRETASSYTGHEA DSTLHQLYQEYQQALRPSGQEKPLRAKPFPRNEDAVTQDLTSLYDKKGDTDTLQDMVA GAPGIDAILDTLDTTGEGEMHWLAMESMPDILQLLSPELGGKTAHSEILPDLTRREHR IIGIDSHYRITPTQKNGNTAHEKN" misc_feature complement(309928..310827) /locus_tag="STM0271" /note="type VI secretion system-associated protein TagK; Region: T6SS_TagK; NF033418" /db_xref="CDD:380261" regulatory complement(309939..309944) /regulatory_class="ribosome_binding_site" /locus_tag="STM0270" /note="putative RBS for STM0270; RegulonDB:STMS1H000631" regulatory complement(310827..310832) /regulatory_class="ribosome_binding_site" /locus_tag="STM0271" /note="putative RBS for STM0271; RegulonDB:STMS1H000632" gene 311190..313834 /locus_tag="STM0272" /db_xref="GeneID:1251790" regulatory 311190..311195 /regulatory_class="ribosome_binding_site" /locus_tag="STM0272" /note="putative RBS for STM0272; RegulonDB:STMS1H000633" CDS 311195..313834 /locus_tag="STM0272" /note="homolog of Yersinia clpB; similar to E. coli ATP-binding component of serine protease (AAC73969.1); Blastp hit to AAC73969.1 (758 aa), 42% identity in aa 150 - 449, 40% identity in aa 421 - 685, 32% identity in aa 30 - 74" /codon_start=1 /transl_table=11 /product="putative ATPase with chaperone activity" /protein_id="NP_459269.1" /db_xref="GeneID:1251790" /translation="METPVSRSALYGKLAGPLFRSLESATAFCKLRSNPWVELTHWLH QLTQQPDNDILHVLRHYQIPLSDVEKALLRQLDMLPAGASAISDFSHHIDLSVEKAWM LASVRYGDNKIRSGWLLLALLTTPELRRVLSSICAPLATLPVDELTEILPSLIETSPE AQERPYDGSGLASAIPGESSQAIPNGGQDGKSALAKYCQDMTAQARDGKIDPVTGREH EIRTMTDILLRRRQNNPLLTGEAGVGKTAVVEGFALAIAQGEVPPALREVRLLALDVG ALLAGASMKGEFESRLKGLLEEAGRSPQPVILFVDEVHTLVGAGGASGTGDAANLLKP ALARGTLRTIGATTWSEYKRHIEKDPALTRRFQVLQIAEPEEIPAMEMVRGLVDTLEK HHNVLILDEAVRAAVQLSHRYIPARQLPDKAISLLDTAAARVALTLHTPPASVQFLRQ QLKAAEMERSLLQKQEKMGIQSDERRDALMARIFSLNNELTASESRWQRELELVHTLQ ELRLAESDADDKTTLQQAETALREWQGDAPVVFPEVSAAVVAAIVADWTGIPAGRMVK DEASQVLELPARLAQRVTGQDGALAQIGERIQTARAGLGDPRKPVGVFMLAGPSGVGK TETALALAEAIYGGEQNLVTINMSEFQEAHTVSTLKGAPPGYVGYGEGGVLTEAVRRH PWSVVLLDEIEKAHHDVHELFYQVFDKGGMEDGEGTHVDFKNTTLLLTTNVGSDLISQ MCEDPALMPDATGLKEALMPELRKHFPAAFLGRVTVIPYLPLDETSRGVIARLHLDRL VARMSEQHGVTLTYSEELVAHIVACCPMHETGARLLIGYIEQHILPRLSRYWLQAMTE KAAIRQIDIGVNGDEQIVFEIVC" misc_feature 311234..313795 /locus_tag="STM0272" /note="type VI secretion ATPase, ClpV1 family; Region: VI_ClpV1; TIGR03345" /db_xref="CDD:274528" gene 313927..314476 /locus_tag="STM0273" /db_xref="GeneID:1251791" regulatory 313927..313932 /regulatory_class="ribosome_binding_site" /locus_tag="STM0273" /note="putative RBS for STM0273; RegulonDB:STMS1H000634" CDS 313934..314476 /locus_tag="STM0273" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459270.1" /db_xref="GeneID:1251791" /translation="MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLA DLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPRVAFAVPNTLTGEGQLMVDITLE NMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLA NAPKSAATQQDVSADNESAE" misc_feature 313946..314446 /locus_tag="STM0273" /note="Predicted component TssA of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]; Region: TssB; COG3516" /db_xref="CDD:442738" gene 314493..316008 /locus_tag="STM0274" /db_xref="GeneID:1251792" regulatory 314493..314498 /regulatory_class="ribosome_binding_site" /locus_tag="STM0274" /note="putative RBS for STM0274; RegulonDB:STMS1H000635" CDS 314500..316008 /locus_tag="STM0274" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459271.1" /db_xref="GeneID:1251792" /translation="MANSNMQATDAVAQDTASASGEFDALLNQAFRPKTTQAAKAVEA AVQTLAQQALANTITVSDDAYKSISAIIAQIDFKLTEQIKLILQHPDWQKLESSWRGM EHLVYNTETDEKLKIRFMNLSKDELRRNMKRYKGIAWDQSPMFKKLYEAEYGQLGGEP YGCIIADYYFDHTPPDVDLLGSIAKVAASAHAPFIAGASPSVLQMDSWQELANPRDLT KIVTQNLEYAPWNSLRASEDSRYIGLTMPRFLARLPYGAKTNPVDEFDFEEDADGSDH TKYVWSNAAYAMGVNINRSFKHYGWCTLIRGVESGGAVENLPCHTFPTDDGGVDMKCP TEIAISDRREAELAKNGFIPLIHRKNSDYAAFIGAQSLQKPQEYYDPDATANANLSAR LPYLFACSRFAHFLKCIVRDKIGSFKEREDMQRWLNEWIMNYVDADPVNSSQETKARR PLAAAEVVVEEVEGNPGYYDAKFFLRPHFQLEGLTGSLRLVTKLPSVKQGNA" misc_feature 314554..315987 /locus_tag="STM0274" /note="Predicted component TssB of the type VI protein secretion system, VipA/VipB/TssB family [Intracellular trafficking, secretion, and vesicular transport]; Region: COG3517" /db_xref="CDD:442739" gene 316071..316181 /locus_tag="STM0274A" /db_xref="GeneID:1251793" CDS 316071..316181 /locus_tag="STM0274A" /codon_start=1 /transl_table=11 /product="invasol SirA" /protein_id="NP_459272.1" /db_xref="GeneID:1251793" /translation="MKKRISSRPRSRKGGVRNDDTYPNASNNAEAFYIIE" misc_feature <316074..316178 /locus_tag="STM0274A" /note="BPSL0067 family protein; Region: BPSL0067_fam; NF033857" /db_xref="CDD:411425" gene 316308..316640 /locus_tag="STM0275" /db_xref="GeneID:1251794" CDS 316308..316640 /locus_tag="STM0275" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459273.3" /db_xref="GeneID:1251794" /translation="MSLKSDVPAAWQLSPRYMSRLWLSSIGVTQGKPENLMDLKPETK KVNGENWSVWETERGSDKETDRYWVSCIYGHEQIWLTQPIPASSTRCKTRNFEGSPED QSVSFICN" gene 316888..317379 /locus_tag="STM0276" /db_xref="GeneID:1251795" regulatory 316888..316893 /regulatory_class="ribosome_binding_site" /locus_tag="STM0276" /note="putative RBS for STM0276; RegulonDB:STMS1H000636" CDS 316894..317379 /locus_tag="STM0276" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459274.1" /db_xref="GeneID:1251795" /translation="MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGS GLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIPQAILVMRKAGGNPLEYLKYTFT DLIVAVVSPSGSHDGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE I" misc_feature 316894..317373 /locus_tag="STM0276" /note="Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion, and vesicular transport]; Region: Hcp; COG3157" /db_xref="CDD:442391" gene 317678..318169 /locus_tag="STM0277" /db_xref="GeneID:1251796" regulatory 317678..317683 /regulatory_class="ribosome_binding_site" /locus_tag="STM0277" /note="putative RBS for STM0277; RegulonDB:STMS1H000637" CDS 317684..318169 /locus_tag="STM0277" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459275.1" /db_xref="GeneID:1251796" /translation="MNRPSFNEAWLAFRKVNHSVADVGSIIGGNVGKNITGGYFQNAC PIRMSYVLNATGFPIARNSPYAKVSGADNKFYIYRVNDMIDYLTHTMGKPDLIVNNPK QSDFIGKKGIIVVKGHGWSNARGHVTLWNGSICSDQCHLLNDPDNGPFVPEVGTLWIL P" misc_feature 317801..318112 /locus_tag="STM0277" /note="Type VI secretion system (T6SS), amidase effector protein 4; Region: Tae4; pfam14113" /db_xref="CDD:433727" gene 318150..318537 /locus_tag="STM0278" /db_xref="GeneID:1251797" regulatory 318150..318155 /regulatory_class="ribosome_binding_site" /locus_tag="STM0278" /note="putative RBS for STM0278; RegulonDB:STMS1H000638" CDS 318154..318537 /locus_tag="STM0278" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459276.1" /db_xref="GeneID:1251797" /translation="MDTAVKWLILVTFSISGMLVWQPSFAQEALTTQYSQSELLKNWA LSHCLALVYKDDVVKNDARATASAYLEYGKQSVEIYHEIDEIAKKYSGLKYNGSISSD FNTMKCIDFIHDRELNELIKRRVEK" misc_feature 318268..318516 /locus_tag="STM0278" /note="Type VI secretion system (T6SS), amidase immunity protein; Region: Tai4; pfam16695" /db_xref="CDD:435522" gene 318674..319165 /locus_tag="STM0279" /db_xref="GeneID:1251798" regulatory 318674..318679 /regulatory_class="ribosome_binding_site" /locus_tag="STM0279" /note="putative RBS for STM0279; RegulonDB:STMS1H000639" CDS 318680..319165 /locus_tag="STM0279" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459277.1" /db_xref="GeneID:1251798" /translation="MSYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGS GLGSGKVSVTNLSFEHYIDRASPNLFKYCSSGKHIPQAILVMRKAGGNPLEYLKYTFT DLIIAMVSPSGSQGGEIASRESIELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE I" misc_feature 318680..319159 /locus_tag="STM0279" /note="Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion, and vesicular transport]; Region: Hcp; COG3157" /db_xref="CDD:442391" gene 319225..319768 /locus_tag="STM0280" /db_xref="GeneID:1251799" regulatory 319225..319230 /regulatory_class="ribosome_binding_site" /locus_tag="STM0280" /note="putative RBS for STM0280; RegulonDB:STMS1H000640" CDS 319232..319768 /locus_tag="STM0280" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_459278.1" /db_xref="GeneID:1251799" /translation="MNEWRNPTRWLCAVAMPFALLLLSGCGSSDALPDLESQRLDLSV KASDKVNPDNQKKAAPIEIRVYELKNDAAFTTADYWSLHDNDKSVLTDDLVRRDSFIL RPGEEKKLRRPLNAQTTAIGVLAGYRNLAKSVWRVTYKIPEAPEKAWYSSFISGKGKV QLEAELEQSAIVITERDK" misc_feature 319241..319765 /locus_tag="STM0280" /note="Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]; Region: COG3521" /db_xref="CDD:442743" gene 319768..321115 /locus_tag="STM0281" /db_xref="GeneID:1251800" regulatory 319768..319773 /regulatory_class="ribosome_binding_site" /locus_tag="STM0281" /note="putative RBS for STM0281; RegulonDB:STMS1H000641" CDS 319772..321115 /locus_tag="STM0281" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459279.1" /db_xref="GeneID:1251800" /translation="MSWNDRVVWSEGQFLLPQMFQQQERYLEHVMHYRSLPLTPFFWG FSHYNIDGEALNIGKLILKEASGIFPDGTPFNAPDHTPLPPPLTILPEHLNQQICLAV PVRAPNSEETTFDNNPESLARFSVHEHDIRDANSLGRGAQLLQLSHLRLRLLPEKAVT GAWIGLPLTRITGLNPDGRIDIDHDLIPPIINYQASSLMCTWLSWINDLIRMRADSLA ERLTGSDNHGHEAAEVSDYLLLQILNRFEPLLTHLAKTPLAPEVLYRYLSELAGELST YVRPQTRRPAEYKEYKHLTPYAGLKSLVDEVQFLLNAVLIRGAQRIELKEGTYGILNA VVAPSDLADFSTLVLAIKASMPTDVLLQHFAAQTKIGPSDRLPELIRSHLPGLALQVL PVPPRQIPFQAGYIYYDIRREGALWEHIARYGGMAMHTAGEFPGLETELWGVRDK" misc_feature 319772..321112 /locus_tag="STM0281" /note="Predicted component of the type VI protein secretion system [Intracellular trafficking, secretion, and vesicular transport]; Region: COG3522" /db_xref="CDD:442744" gene 321106..322416 /locus_tag="STM0282" /db_xref="GeneID:1251801" regulatory 321106..321111 /regulatory_class="ribosome_binding_site" /locus_tag="STM0282" /note="putative RBS for STM0282; RegulonDB:STMS1H000642" CDS 321112..322416 /locus_tag="STM0282" /note="similar to E. coli putative outer membrane protein (AAC76576.1); Blastp hit to AAC76576.1 (219 aa), 44% identity in aa 145 - 214" /codon_start=1 /transl_table=11 /product="putative outer membrane protein, OmpA family" /protein_id="NP_459280.1" /db_xref="GeneID:1251801" /translation="MTDSTLTPPAADMMSFLSTTPEHKDSEYETPVHTSQRTELNVIV EDGPDSKLRLAEISAAANPLLAAARPLLCALAAMPAKLDAALVEPYRNLLVREMHLYQ TLCDQANLRREHVLAVRYCLCTALDEAANNTTWGRRGVWAGKSLLVTFHGESEGGIKL FQIIGRLAASFQEHGNVLEVIYHLLGLGFEGRYSVQPDGRKQLDNIRQQLLTQLSQRR DPVMPALSPDFQGAISGRLRRMRRVPVWLSAGIALLAMLTLFGLYSHRMDVQTVTVQQ HIDAIGIKLPPPPVPVHKLRLKILLANEIARGLLTVDEDDQHSRVVFRGDAMFVPGQK TVSDAIRPVINKAAREIARVGGAVTVTGHTDSQPIHSAEFPSNLVLSEKRAAEVAALL TSGGVPAGRVHIVGKGDTVPVADNGSKAGRAKNRRVEILVVE" misc_feature 321112..322413 /locus_tag="STM0282" /note="hypothetical protein; Provisional; Region: PRK08126" /db_xref="CDD:236157" gene 322414..323194 /locus_tag="STM0283" /db_xref="GeneID:1251802" regulatory 322414..322419 /regulatory_class="ribosome_binding_site" /locus_tag="STM0283" /note="putative RBS for STM0283; RegulonDB:STMS1H000643" CDS 322421..323194 /locus_tag="STM0283" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459281.1" /db_xref="GeneID:1251802" /translation="MMKKSTYDVSHHSAVCGVTGDYYRISATYHITRSVRVFLIILCC LLSGGAFAGSPINAGFISPDNVNLSTQDFLKFYATDNVQKKDNALMYMLGVEDATEGK AWCGYGQVDSITINHTVLTWFEQHAVKKPDVRASILIEEALVKNFPCQRTDSSIKIAS RSSPILSLTPDALNLSGNDFFKFWVSGNQRDKLRAGVYLLGVEDATENKLWCGYALFK TLTLNELVYVSLKNKTNEELNSRAAELIINKLIEYPCNI" misc_feature 322625..322867 /locus_tag="STM0283" /note="Rap1a immunity proteins; Region: Rap1a; pfam18602" /db_xref="CDD:465818" gene 323391..323828 /locus_tag="STM0284" /db_xref="GeneID:1251803" regulatory 323391..323396 /regulatory_class="ribosome_binding_site" /locus_tag="STM0284" /note="putative RBS for STM0284; RegulonDB:STMS1H000644" CDS 323397..323828 /locus_tag="STM0284" /codon_start=1 /transl_table=11 /product="putative shiga-like toxin A subunit" /protein_id="NP_459282.1" /db_xref="GeneID:1251803" /translation="MVCLLVGVPAISYAHDYGCATVGASMESSLFDAIKNDLNIDVAT IIKDKTKVEILDISPVSKVYAESLARMDYEKDKAKNKVAILDKKSYFDSYYENQVKSI VAKYTYINKDKEKDIFIASSFMNADECSVRFNGYITLSREF" gene 323857..327731 /locus_tag="STM0285" /db_xref="GeneID:1251804" regulatory 323857..323862 /regulatory_class="ribosome_binding_site" /locus_tag="STM0285" /note="putative RBS for STM0285; RegulonDB:STMS1H000645" CDS 323862..327731 /locus_tag="STM0285" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459283.1" /db_xref="GeneID:1251804" /translation="MQKFLSLLFSRRALAVVGVLVLALLVWFVGPLVSFDTLRPLASV GSRVVTIALLLMLLVLWLVNWSMSIIGISVLCLAIGFVTPLLALGDVHPFAPLWVRLT LIGFILLMYALYGLYRLWRALRMDEQLLRRFLHPRGEEVPVAGEIKADLRTVNHIVTQ AIRQLRQLRVDMPGWRKIFEGKRFLYELPWFMVVGSPGDGKTTALLNTGLQFPLAEQM EQTSRILTVPGGGTLHCDWWFTNEAVLIDTAGRYARHDDGGEASAAQRNAGEWQGFLG LLRKHRPGAPLNGVILTLNVADLTAQSPAERLAACAALRARLAELRETLGIRFPVYLV VTKMDLLPGFSEYFRTLTSHLRAQIWGFTLPYSRRRKAGDPQALHAACAQELARLTLR LDQGLDTRLQEEYDLKSRQRLYTFPREFAALGEPLLEAIEQIFLDSKFDATQLNNTLR GVFFTSAAQAQADAVADQLSIWQRFVRAIKTARGESSASLPHALPDGNRSYFLHDLLT QFIFREAHLVEPNLQWAWRYRLLRLGGHLLVLVLAFLLWQGMQTSQQTNGDYLNEISA RATRLDGDVKAYTGKPAMAPVPALLDSARELSAWPELDPDAPPLAWRYGLYSVPPVTD SVASLYNRLLDQLLLPPLVKRMEYVLADAIARQDSKAAYDALRIYLLLNLDKDHEDKY NAAEIQSWVINDLGNSDSVAGFGGRAAVLTHIEALFDGSRVVHSPYEKDEALIRQARA FLDGHTSTERIYARALAAMESEAPQEFTLVRAVGADAGTVFVRSNGAPLDRGVPGIFT REGYRELFDKRLPEFVAAATANDGWVMGRESTPKKLTDSLRSQIPGQEQSVAREVRRL YLTEYARRWQDFLDSIHSINSAGEEGSSGLAYDLQVLRTLASPDSPLMRLGKAVVEQT TLVPPPDPQARQKQLAQRASGNAGKVVQTAKLFQDIHPEERLEKTLVDDRFAALREVI AGRTDGGQSGGGTMQIASLLTMLNEYYTQLTIADSALAAGTLPARITAADKLQLEAAK LPAPLKNILLDLTKQGTRKINAGTGDVLNTQMEAMMGDDCRDAIDGRYPFADSPQEVS AEDFNRIFASGGVLDAFWSKQLAPLADTASDPWRYKPTEGNMTLQGPDLTPFQQAKQI RSVFFNSEGGKKFSWSMQISVVDMDPAIMELVIDIDGQVLRYAHGPDRPLKVTWPGPR NGSMAEITASPRIRQDTSTLLTGGPWALFHLLDAGMVQETAVRGRQLVEYDFDGRRVV LEITAGRDFNPVSRELLQNFSCPARAL" misc_feature 324054..327722 /locus_tag="STM0285" /note="Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]; Region: IcmF; COG3523" /db_xref="CDD:442745" gene 327726..328519 /locus_tag="STM0286" /db_xref="GeneID:1251805" regulatory 327726..327731 /regulatory_class="ribosome_binding_site" /locus_tag="STM0286" /note="putative RBS for STM0286; RegulonDB:STMS1H000646" CDS 327731..328519 /locus_tag="STM0286" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459284.1" /db_xref="GeneID:1251805" /translation="MRRPAVVSAPAMFGRLPDQRDYVRWRVGAEEGRIWQDWLNRQTW VGSGRHIVLPGGQTTDEERDGWMHLSPRGEHDMPAPEHHPLPWSFVMSPGFLPMGGTT DWLTGVLMASRDSVGRPWPLVIYQRCGREWLDESLQETQGWLYWLARLAAQHITPDTM RRGRLTEQVDQLWAMWQPGPWWAQWLRGLRRTSQRSRELTGLPDEAPVVELPGVRYLP WPGWPGKTLGQATPGQGWFWQQNSEGRYVDALRLVDEKNRGQML" misc_feature 327767..328207 /locus_tag="STM0286" /note="TagF N-terminal domain, Type VI secretion system-associated; Region: TagF_N; cl01611" /db_xref="CDD:470268" gene 328510..328932 /locus_tag="STM0287" /db_xref="GeneID:1251806" regulatory 328510..328515 /regulatory_class="ribosome_binding_site" /locus_tag="STM0287" /note="putative RBS for STM0287; RegulonDB:STMS1H000647" CDS 328516..328932 /locus_tag="STM0287" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459285.1" /db_xref="GeneID:1251806" /translation="MKKYAVEVLFMSACAGMFLPVFAWGGTDVNIDNPLAECVDIHPV HRQEMDNLTILKTTVTLKKSTGECGCFSTLINYTSLLAQDVEGYGRGSAYSLQEGNIS LAKMQGRYPFSFVLSVDNQSVRDQKLALMIRCTPPL" misc_feature 328537..328926 /locus_tag="STM0287" /note="Uncharacterized protein conserved in bacteria (DUF2195); Region: DUF2195; pfam09961" /db_xref="CDD:430952" gene 328950..329477 /locus_tag="STM0288" /db_xref="GeneID:1251807" regulatory 328950..328955 /regulatory_class="ribosome_binding_site" /locus_tag="STM0288" /note="putative RBS for STM0288; RegulonDB:STMS1H000648" CDS 328956..329477 /locus_tag="STM0288" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459286.1" /db_xref="GeneID:1251807" /translation="MMAVRLTFDGQKLTWPGIGIFKATTGLPDLQWPDKQCVPDAAIP EGNYKLFIQFQGEAPIRNAADCDLGPSWGWSTIPRGQAAGTCEIYWANWGYNRIRLES ADEKTRKACGGKRGGFYIHDSTKGYSHGCIEVEPVFFRILKQETEKENGEKTFTVNVK YVSGQQTNGGTKQ" gene 329867..332063 /locus_tag="STM0289" /db_xref="GeneID:1251808" regulatory 329867..329872 /regulatory_class="ribosome_binding_site" /locus_tag="STM0289" /note="putative RBS for STM0289; RegulonDB:STMS1H000649" CDS 329874..332063 /locus_tag="STM0289" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459287.1" /db_xref="GeneID:1251808" /translation="MSFVSTNNKSGMGGLTTTTPPITGESGGVTADSVAGSVADAAES AVEQAAGSLFGALPEPSGLVKAAVAAAQAAAAAGMAQDAVSAIVSAVAGGPGAHNVTV SGSAVPPGALLFASLDGGETLSELFSYVVQLKTPDTLNLGYVSPAANLPLKPMVGKDL CVNIELDGGGKRHISGLVTAARVVGHEGRSVTYELRMEPWVKLLTHTSDYKAFQNKTV VDILDEVLAEYPYPVEKRLVESYPVRTWQVQYGETDFDFLQRLMQEWGIYWWFEHSED SHTLVLADAISAHKACPDSPLVEWHQEGLKLDKEFIHTITANESLRTGQWVLDDFDFT KPRSLLANTVANPRETGHATYEHYEWPGDYFDKSEGEMLTRIRMEAQRSPGSRVLGGG NIRTLMTGYTFTLENYPTAEVNQEYLLMQTLLFVQDNAQHSGQDQHFTFSTRFELHPT REVFRPQRTVSKPHTKGPQSAIVTGPAGQEIWTDQYGRVKVQFGWDRYGKMDENSSCW IRVSYPWAGKGFGMIQIPRIGQEVLVDFKNGDPDLPIIVGRTYNQDTMPPWGLPGMAS QSGIFSHSLYGGPTNGNMLRFDDKTGAEEVKFHAEKDLNTTVKNNETHTVMVDRTKTI IKNETNSIGEDRNTTVTKNDGLSVKLAQTINIGTTYRLDVGDQFTLRCGNAALVLHKD GSIEFCGKQLMLHTSDVMQLIGKGIDMNPDGGTAVTADDIAPLLTSE" misc_feature 330186..332042 /locus_tag="STM0289" /note="Uncharacterized conserved protein VgrG, implicated in type VI secretion and phage assembly [Intracellular trafficking, secretion, and vesicular transport, Mobilome: prophages, transposons, General function prediction only]; Region: VgrG; COG3501" /db_xref="CDD:442724" gene 332080..332533 /locus_tag="STM0290" /db_xref="GeneID:1251809" regulatory 332080..332085 /regulatory_class="ribosome_binding_site" /locus_tag="STM0290" /note="putative RBS for STM0290; RegulonDB:STMS1H000650" CDS 332087..332533 /locus_tag="STM0290" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459288.1" /db_xref="GeneID:1251809" /translation="MDRPYRIQEGCFVLPETFTDRSVNIFILEGNERTSPSLNISRDT LKPDEDLPAYIDRQIALMKKNLGQHRVLSRAPAQAGTGNDALMGEQIAATHKSGKTEV YQRQAGFIATPGKVLVFTLTSPRPFDDKADLLWNTWLAGFQPDKNE" misc_feature 332096..332518 /locus_tag="STM0290" /note="Uncharacterized conserved protein [Function unknown]; Region: COG5435" /db_xref="CDD:444186" gene 332541..336646 /locus_tag="STM0291" /db_xref="GeneID:1251810" regulatory 332541..332546 /regulatory_class="ribosome_binding_site" /locus_tag="STM0291" /note="putative RBS for STM0291; RegulonDB:STMS1H000651" CDS 332552..336646 /locus_tag="STM0291" /note="similar to E. coli rhsD protein in rhs element (AAC73599.1); Blastp hit to AAC73599.1 (1426 aa), 27% identity in aa 315 - 985, 46% identity in aa 1151 - 1261, 25% identity in aa 297 - 788, 24% identity in aa 346 - 870, 22-1073758628dentity in aa 465 - 904, 26% identity in aa 317 - 724, 32-1073758654dentity in aa 4 - 143, 24% identity in aa 232 - 605, 21% identity in aa 562 - 970, 23% identity in aa 318 - 755, 32% identity in aa 974 - 1076, 26% identity in aa 935 - 1051, 22% identity in aa 358 - 540, 37% identity in aa 1 - 32, 31-1073758588dentity in aa 1041 - 1099, 26% identity in aa 1000 - 1083, 30-1073758532dentity in aa 943 - 1025, 27% identity in aa 1172 - 1193, 32% identity in aa 1211 - 1235, 63% identity in aa 1393 - 1403, 28% identity in aa 1175 - 1210" /codon_start=1 /transl_table=11 /product="putative RHS-family protein" /protein_id="NP_459289.1" /db_xref="GeneID:1251810" /translation="MYEAARVDDPIYHTSALAGFLIGAIIGIAIIALAAFAFFSCGFL AGLILGFMADQIASGVLQLGEAIGRSIHHTAGKILTGSENVSTNSRPAARAVLSTVKC DNHIAEKRIAQGSENIYINSQPAARKDDHTECDAVIEDGSPNVFLGGGTQTVLEISSE IPDWLRKVVDVLFVVASLLGGLAGAWRQAAKLGTKFGTKCAAKFIGGELVGMAVGEAI SGLFSNPVDVTTGQKILLPETDFTLPGRLPVTCSRFYASHLETVGLLGRGWRLNWETS LRDDDEHITLTGVQGRELRYPKTMLTPGHQIFDPEEQLYLSRLHDGRYVLHYTDRSYY VFGDFDSDGMAYLLFMETPHRQRIVFGHEGGRLVRIASSSGHHLLLHRTQTPAGERLS RIELVQGGTRGNLVEYRYDDNGQLTGVVNRAGTQVRQFAYENGLMTAHSNATGFTCRY RWQELDGAPRVTEHDTSDGEHYRFDYDFAAGTTTVTGRQGETWQWWYDRETYITAHRT PGGGMYRFTYNEDHFPVNIELPGGRTVAYEYDIQNRVVKTTDPEGRVTQTQWNGEFDE ITRTALDDDAVWKTQYNAHGQPVQETDPEGRVTQYAYDEQGQMCSRTDAAGGTVVTAF DSRGQMTRYTDCSGRSTGYDHDEDGNLTRVTDAEGKVVRISYNRLGLPETVNSPGKQQ DRYTWNALGLMSSHRRITGSVESWRYTPRGLLAAHTDEEKRETRWQYTPEGRVAALTN GNGAQYRFSHDADGRLVREVRPDGLSRTFILDDSGYLTAIQTTGTQGGVRRETQQRDA LGRLLRTENEHGQRTFSYNRLDQITAVTLTPTEAGQQQHRMQADTVRFEYDRSGWLTA EHAGNGSICYQRDALGNPTDITLPDGQHLTHLYYGSGHLLQTALDGLTVSEYERDSLH RQIMRTQGQLATYSGYDDDGLLSWQRSLASGSAPVLPGQRPARQGCVTSRDYYWNNHG EVGTIDDGLRGSVVYSYDRSGYLTGRSGQMYDHDRYYYDKAGNLLDNEGQGAVMSNRL PGCGRDRYGYNEWGELTTRRDQQLEWNAQGQLTRVISGNTETHYGYDALGRRTRKATY GRHTGHTARSRTDFVWEGFRLLQENVQQQGWRTYLYDAEQPYTPVASVTGRGESRQVW YYHTDVTGTPQEVTAADGTLVWAGYIRGFGENAADISNSGAYFHQPLRLPGQYFDDET GLHYNLFRYYAPECGRFVSQDPIGLRGGLNLYQYAPNPLKYIDPLGLTATVGRWMGPA EYQQMLDTGTVVQSSTGTTHVAYPADIDAFGKQAKNGAMYVEFDVPEKSLVPTNEGWA KIVGPDSIEGRLAKRKGLPVPEMPTAENITVRGEKINGEVEAKC" misc_feature 332738..332995 /locus_tag="STM0291" /note="proline-alanine-alanine-arginine (PAAR) domain, also containing C-terminal Rearrangement hotspot (Rhs) extensions; Region: PAAR_RHS; cd14742" /db_xref="CDD:269827" misc_feature order(332768..332770,332864..332866,332951..332953) /locus_tag="STM0291" /note="putative Zn binding site [ion binding]; other site" /db_xref="CDD:269827" misc_feature 333170..336304 /locus_tag="STM0291" /note="RHS element core protein; Region: RHS_core; NF041261" /db_xref="CDD:469161" gene 337088..337836 /locus_tag="STM0292" /db_xref="GeneID:1251811" regulatory 337088..337093 /regulatory_class="ribosome_binding_site" /locus_tag="STM0292" /note="putative RBS for STM0292; RegulonDB:STMS1H000652" CDS 337096..337836 /locus_tag="STM0292" /note="similar to E. coli rhsE protein in rhs element (AAC74538.1); Blastp hit to AAC74538.1 (682 aa), 44% identity in aa 426 - 541, 28% identity in aa 273 - 300" /codon_start=1 /transl_table=11 /product="putative RHS-family protein" /protein_id="NP_459290.1" /db_xref="GeneID:1251811" /translation="MQQQGWRTYLYDAEQPYTPVASVTGKGESRQVWYYHTDVTGTPQ EVTAADGTLVWAGYIKGFGENAADISNSGAYFHQPLRLPGQYFDDETGLHYNLFRYYA PECGRFVSQDPIGLAGGLNLYQYAPNPIRWIDPLGLAILEHQSNFDAARRTGFENAGM TNPEDVTFSKVDPKTGTVVEFKGPNGAKVAYDAPHADMDVTAGHDKPHVGWQSAGKRG SGGANRGNITYDGPQHPHRSDSKGDDKC" misc_feature 337189..337302 /locus_tag="STM0292" /note="RHS protein; Region: RHS; pfam03527" /db_xref="CDD:427349" misc_feature 337279..337509 /locus_tag="STM0292" /note="RHS repeat-associated core domain; Region: Rhs_assc_core; TIGR03696" /db_xref="CDD:274730" misc_feature 337462..337803 /locus_tag="STM0292" /note="Bacterial toxin 47; Region: Ntox47; pfam15540" /db_xref="CDD:406082" gene 337825..338276 /locus_tag="STM0293" /db_xref="GeneID:1251812" regulatory 337825..337830 /regulatory_class="ribosome_binding_site" /locus_tag="STM0293" /note="putative RBS for STM0293; RegulonDB:STMS1H000653" CDS 337830..338276 /locus_tag="STM0293" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459291.1" /db_xref="GeneID:1251812" /translation="MLNSNMSELRIELENAIKNLGIHDYRVDKPEQIVSEIKEIYVNG NPRTWWLSLKHRQYVFSYTDNSGYKNISQIVSKQLNESNVINKHIFLIADEDNEQIYV YNVPLNSLPEIIENCRYFEYYVADHELSWLICENDHGDLIVCSTIK" misc_feature 337848..338261 /locus_tag="STM0293" /note="Family of unknown function (DUF6756); Region: DUF6756; pfam20541" /db_xref="CDD:466690" gene 338835..339276 /locus_tag="STM0294" /db_xref="GeneID:1251813" regulatory 338835..338840 /regulatory_class="ribosome_binding_site" /locus_tag="STM0294" /note="putative RBS for STM0294; RegulonDB:STMS1H000654" CDS 338839..339276 /locus_tag="STM0294" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459292.1" /db_xref="GeneID:1251813" /translation="MLRFVKPGDIFCFKLDEDRYCFGRIITLMTVGHLSELFDIIKKP PGITELEISNARRIIEPIIVDTYSLFDKKLENGSDWRIIGHQVNYNPKNLDGIYFALG IGDSCKKKDCYGNDFLISESEWKTLPKLSPKGGFDIKKRLEIA" misc_feature 338854..339171 /locus_tag="STM0294" /note="Immunity protein 26; Region: Imm26; pfam15428" /db_xref="CDD:434709" gene 340039..340353 /locus_tag="STM0295" /db_xref="GeneID:1251814" regulatory 340039..340044 /regulatory_class="ribosome_binding_site" /locus_tag="STM0295" /note="putative RBS for STM0295; RegulonDB:STMS1H000655" CDS 340045..340353 /locus_tag="STM0295" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459293.1" /db_xref="GeneID:1251814" /translation="MLTNANKINAVDVFTTGISMVNDKDTAILISDLMLRFGKELDES VAVVQSRCDEDEFNVYRETVGFIMGEMLIKIMNPLYEKHPEIKPKGLKQNIWNRMNNV " gene complement(340455..340703) /locus_tag="STM0296" /db_xref="GeneID:2673756" CDS complement(340455..340703) /locus_tag="STM0296" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_446753.1" /db_xref="GeneID:2673756" /translation="MARLCGILTYSRVERLSVRLYGEWMPQAGFINGMPVKVRVMRDC IVITPQHTHGLFGCIEGMGVTRINKRSAEQWLKTFPGR" misc_feature complement(340557..>340655) /locus_tag="STM0296" /note="Toxin SymE, type I toxin-antitoxin system; Region: SymE_toxin; pfam08845" /db_xref="CDD:370150" gene 340748..340953 /locus_tag="STM0297" /db_xref="GeneID:1251816" regulatory 340748..340753 /regulatory_class="ribosome_binding_site" /locus_tag="STM0297" /note="putative RBS for STM0297; RegulonDB:STMS1H000656" CDS 340756..340953 /locus_tag="STM0297" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_446754.1" /db_xref="GeneID:1251816" /translation="MRKARITAHQIIAVIRSVESGRTVKDVYREAGISEATRDNWRSG YGGRDTRGITKGSTVFTVCSS" misc_feature 340759..>340896 /locus_tag="STM0297" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cl46857" /db_xref="CDD:481197" gene 341175..341460 /locus_tag="STM0298" /db_xref="GeneID:1251817" regulatory 341175..341180 /regulatory_class="ribosome_binding_site" /locus_tag="STM0298" /note="putative RBS for STM0298; RegulonDB:STMS1H000657" CDS 341179..341460 /locus_tag="STM0298" /note="similar to E. coli orf, hypothetical protein (AAC73370.1); Blastp hit to AAC73370.1 (384 aa), 28% identity in aa 221 - 295" /codon_start=1 /transl_table=11 /product="putative integrase core domain protein" /protein_id="NP_446755.1" /db_xref="GeneID:1251817" /translation="MLRMDKGPEFISLALAEWAKKHAVKLAFIQPGKPKKNVFITRFN RTYRTEILNSYLFRTLNEVWEITDKGLSEYNCERPHESRNNMIPKEYRQ" misc_feature <341179..341454 /locus_tag="STM0298" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene 342207..342722 /gene="safA" /locus_tag="STM0299" /db_xref="GeneID:1251818" regulatory 342207..342212 /regulatory_class="ribosome_binding_site" /gene="safA" /locus_tag="STM0299" /note="putative RBS for safA; RegulonDB:STMS1H000658" CDS 342210..342722 /gene="safA" /locus_tag="STM0299" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_459297.1" /db_xref="GeneID:1251818" /translation="MVIQMKSIKKLIIASALSMMAASCYAGSFLPNSEQQKSVDIVFS SPQDLTVSLIPVSGLKAGKNAPSAKIAKLVVNSTTLKEFGVRGISNNVVDSTGTAWRV AGKNTGKEIGVGLSSDSLRRSDSTEKWNGVNWMTFNSNDTLDIVLTGPAQNVTADTYP ITLDVVGYQP" misc_feature 342222..342719 /gene="safA" /locus_tag="STM0299" /note="Saf-pilin pilus formation protein SafA; Provisional; Region: PRK15221" /db_xref="CDD:185143" gene 342830..343543 /gene="safB" /locus_tag="STM0300" /db_xref="GeneID:1251819" CDS 342830..343543 /gene="safB" /locus_tag="STM0300" /note="similar to E. coli putative chaperone (AAC76177.1); Blastp hit to AAC76177.1 (231 aa), 35% identity in aa 26 - 223" /codon_start=1 /transl_table=11 /product="putative fimbriae assembly chaparone" /protein_id="NP_459298.1" /db_xref="GeneID:1251819" /translation="MAVALFATNSMVSVYAVNQQLNSATKLFSVKLGATRVIYHAGTA GATLSVSNPQNYPILVQSSVKAADKSSPAPFLVMPPLFRLEANQQSQLRIVRTGGDMP TDRETLQWVCIKAVPPENEPSDTQAKGATLDLNLSINACDKLIFRPDAVKGTPEDVAG NLRWVETGNKLKVENPTPFYMNLASVTVGGKPITGLEYVPPFADKTLNMPGSAHGDIE WRVITDFGGESHPFHYVLK" misc_feature 342830..343540 /gene="safB" /locus_tag="STM0300" /note="pili assembly chaperone PapD; Region: PRK15224" /db_xref="CDD:185146" gene 343560..346077 /gene="safC" /locus_tag="STM0301" /db_xref="GeneID:1251820" regulatory 343560..343565 /regulatory_class="ribosome_binding_site" /gene="safC" /locus_tag="STM0301" /note="putative RBS for safC; RegulonDB:STMS1H000659" CDS 343567..346077 /gene="safC" /locus_tag="STM0301" /note="similar to E. coli putative outer membrane protein, export function (AAC73634.1); Blastp hit to AAC73634.1 (867 aa), 34% identity in aa 35 - 862" /codon_start=1 /transl_table=11 /product="putative fimbriae usher" /protein_id="NP_459299.1" /db_xref="GeneID:1251820" /translation="MKFKQPALLLFIAGVVHCANAHTYTFDASMLGDAAKGVDMSLFN QGVQQPGTYRVDVMVNGKRVDTRDVVFKLEKDGQGTPVLAPCLTVSQLSRYGVKTEDY PQLWKAAKPPDECADLTAIPQAKAVLDINNQQLQLSIPQLALRPEFKGIAPEDLWDDG IPAFLMNYSARTTQTDYKMDMVGRDNSSWVQLQPGINIGAWRVRNATSWQRSSQLSGK WQAAYTYAERGLYSLKSRLTLGQKTSQGEIFDSVPFTGVMLASDDNMVPYSERQFAPV VRGIARTQARVEVKQNGYTIYNTTVAPGPFALRDLSVTDSSGDLHVTVWEADGSTQMF VVPYQTPAIALHQGYLKYSLLAGRYRSSDSATDKAQIAQATLMYGLPWNLTAYGGIQS ATHYQAALLGLGGSLGRWGSLSVDGSDTHSQRQGEAVQQGASWRLRYSNQLTATGTNF FLTRWQYASQGYNTLSDVLDSYRHNGNRLWSWRENLQPSSRTTLMLSQSWGRHLGNLS LTGSRTDWRNRPGHDDSYGLSWGTSIGGGSLSLNWNQNRTLWRNGAHRKENITSLWFS MPLSRWTGNNVSASWQMTSPSHGGQTQQVGVNGEAFSQQLDWEVRQSYRADAPPGGGN NSALHLAWNGDYGLLGGDYSYSRAMRQMGVNIAGGIVIHHHGVTLGQPLQGSVALVEA PGASGVPVGGWPGVKTDFRGDTTVGNLNVYQENTVSLDPSRLPDDAEVTQTDVRVVPT EGAVVEAKFHTRIGARALMTLKREDGSAIPFGAQVTVNGQDGSAALVDTDSQVYLTGL ADKGELTVKWGAQQCRVNYRLPAHKGIAGLYQMSGLCR" misc_feature 343567..346074 /gene="safC" /locus_tag="STM0301" /note="fimbrial biogenesis outer membrane usher protein; Region: PRK15223" /db_xref="CDD:185145" gene 346092..346569 /gene="safD" /locus_tag="STM0302" /db_xref="GeneID:1251821" regulatory 346092..346097 /regulatory_class="ribosome_binding_site" /gene="safD" /locus_tag="STM0302" /note="putative RBS for safD; RegulonDB:STMS1H000660" CDS 346099..346569 /gene="safD" /locus_tag="STM0302" /codon_start=1 /transl_table=11 /product="putative fimbriae subunit" /protein_id="NP_459300.1" /db_xref="GeneID:1251821" /translation="MWMKIQRVKTVIYSVSLLVAASSLVPIANAAEKLQTTLRVGTYF RAGHVPDGMVLAQGWVTYHGSHSGFRVWSDEQKAGNTPTVLLLSGQQDPRHHIQVRLE GEGWQPDTVSGRGAILRTAADNASFSVVVDGNQEVPADTWTLDFKACALAQEDT" misc_feature 346099..346566 /gene="safD" /locus_tag="STM0302" /note="putative pilin structural protein SafD; Provisional; Region: PRK15222" /db_xref="CDD:185144" gene 346968..347796 /gene="ybeJ" /locus_tag="STM0303" /db_xref="GeneID:1251822" regulatory 346968..346973 /regulatory_class="ribosome_binding_site" /gene="ybeJ" /locus_tag="STM0303" /note="putative RBS for ybeJ; RegulonDB:STMS1H000661" CDS 346975..347796 /gene="ybeJ" /locus_tag="STM0303" /note="similar to E. coli orf, hypothetical protein (AAC74108.1); Blastp hit to AAC74108.1 (672 aa), 36% identity in aa 52 - 189, 21% identity in aa 213 - 280" /codon_start=1 /transl_table=11 /product="putative xylanase/chitin deacetylase" /protein_id="NP_459301.1" /db_xref="GeneID:1251822" /translation="MSYARHLPVLMYHHVSDKPGQITLSPRTFRAQMKWLAESGWKTV TAAEVEAFYHGARLPRKSVMLTFDGGWLDNWLQVFPVLQEFNLHAHLFLVTSLISDGP VRIPAGEPVYSHDECQMLVKQGRADEVMLRWSEVREMHLSGLVEFHSHTHTHRRWDQK PVSRNPSDLLRVDILLSRKRMREMLGYCSQHLCWPEGWYCSDYIHVAEELGFTYLYTT ERRMNNPVIGSQRIGRINAKERKNVGWLKRRLFYHTTPGFSSLLARHKGARRIAD" misc_feature 347050..347736 /gene="ybeJ" /locus_tag="STM0303" /note="Putative catalytic NodB homology domain of a hypothetical protein Ecf1 from Escherichia coli and similar proteins; Region: CE4_Ecf1_like_5s; cd10969" /db_xref="CDD:213026" misc_feature order(347176..347181,347422..347424,347434..347436, 347557..347565) /gene="ybeJ" /locus_tag="STM0303" /note="putative active site [active]" /db_xref="CDD:213026" gene 348606..349558 /gene="sinR" /locus_tag="STM0304" /db_xref="GeneID:1251823" regulatory 348606..348611 /regulatory_class="ribosome_binding_site" /gene="sinR" /locus_tag="STM0304" /note="putative RBS for sinR; RegulonDB:STMS1H000662" CDS 348611..349558 /gene="sinR" /locus_tag="STM0304" /note="SINR protein. (SW:SINR_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_459302.1" /db_xref="GeneID:1251823" /translation="MMELINNRGMRDWMIFIKVAEVGNLSRAARELDISISAVSKSLS RLENSIEVTLLRRDSHHLELTGAGQTAYASMKRITSSFQSLLDELRNPDKIIRGSIKF SAPAIVCEFLANKWIWEFTASYPDTKIYLDSRERSDFFSKSLEFDELVFKSGIIESED LVYRKISPLKLVLCASPKYIRKYGRISHPGDLENHIIVGLHNHGLSGPLTLFRQDESY TISGAVNVHLSSNNLLSVLNLVLEGKGINLMTPAWLATKYLKNNELEIILPEWRVPDL PIYLVWRHRQYYSPLFQRFLSFIEDKWNNRPQIDFLNDD" misc_feature 348641..349513 /gene="sinR" /locus_tag="STM0304" /note="DNA-binding transcriptional regulator, LysR family [Transcription]; Region: LysR; COG0583" /db_xref="CDD:440348" gene 349672..349890 /locus_tag="STM0305" /db_xref="GeneID:1251824" regulatory 349672..349677 /regulatory_class="ribosome_binding_site" /locus_tag="STM0305" /note="putative RBS for STM0305; RegulonDB:STMS1H000663" CDS 349675..349890 /locus_tag="STM0305" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459303.1" /db_xref="GeneID:1251824" /translation="MMPTDGNDNTRKQDGAVFGQPEVKPIPETLQCTEKWRQVAPVQR FSEGAGVFITDILHCAFGNPQDQLFYR" gene complement(349894..350619) /locus_tag="STM0306" /db_xref="GeneID:1251825" CDS complement(349894..350613) /locus_tag="STM0306" /codon_start=1 /transl_table=11 /product="homolog of sapA" /protein_id="NP_459304.1" /db_xref="GeneID:1251825" /translation="MKNFFAVCIIPLVVAWSATASAKEGIYITGKAGTSVVNVYGINS TFSQDEIVNGHATLPDRTKGVFGGGVAIGYDFYDPFQLPVRLELDTTFRGETDAKGGQ DIIAFGDPVHINVKNQVRMTTYMVNGYYDFHNSTAFTPYISAGVGLAHVKLSNNTIPV GFGINETLSASKNNFAWGAGIGAKYAVTDNIMIDASYKYINAGKVSISKNHYAGDEHT AYDADTKAASNDFMLGITYAF" misc_feature complement(349897..350409) /locus_tag="STM0306" /note="Opacity protein LomR and related surface antigens [Cell wall/membrane/envelope biogenesis]; Region: LomR; COG3637" /db_xref="CDD:442854" regulatory complement(350614..350619) /regulatory_class="ribosome_binding_site" /locus_tag="STM0306" /note="putative RBS for STM0306; RegulonDB:STMS1H000664" gene complement(350944..351358) /locus_tag="STM0307" /db_xref="GeneID:1251826" CDS complement(350944..351351) /locus_tag="STM0307" /codon_start=1 /transl_table=11 /product="homology to Shigella VirG protein" /protein_id="NP_459305.1" /db_xref="GeneID:1251826" /translation="MKNFVRTTLLAATLAGVSFGAFATAVPNPPLPAQDPIVQHLKLT NDQITRIKKLHQQLETDVSQISMKGIKDGALIEVIKSGKWDDAAVKQQLAAFSNIEQQ ARYYRVKYYFDLSKVLTPEQRQQVQQDLAQALE" misc_feature complement(350947..351351) /locus_tag="STM0307" /note="Periplasmic chaperone Spy, Spy/CpxP family [Posttranslational modification, protein turnover, chaperones]; Region: CpxP; COG3678" /db_xref="CDD:442894" regulatory complement(351353..351358) /regulatory_class="ribosome_binding_site" /locus_tag="STM0307" /note="putative RBS for STM0307; RegulonDB:STMS1H000665" gene complement(351722..352503) /gene="yafV" /locus_tag="STM0308" /db_xref="GeneID:1251827" CDS complement(351722..352489) /gene="yafV" /locus_tag="STM0308" /note="similar to E. coli putative EC 3.5. amidase-type enzyme (AAC73323.1); Blastp hit to AAC73323.1 (256 aa), 82% identity in aa 3 - 255" /codon_start=1 /transl_table=11 /product="putative amidohydrolase" /protein_id="NP_459306.1" /db_xref="GeneID:1251827" /translation="MSGLKITLLQQPLVWMDGPANLRHFDRQLELVSGRDVIVLPEMF TTGFAMEAANNSLSQDSVITWMQAKARQTDALIAGSAALQTERGAVNRFLLVEPEGKV HLYDKRHLFRMADEHQHYAAGDKRIIVQWRGWRILPLICYDLRFPIWSRNRNDYDLAL YVANWPAPRSLHWQTLLTARAIENQAYVAGCNRVGTDGNGLHYRGDSRIINPQGDIIA TAEPHQATRIDADLSLVALQDYREKFPAWRDADPFTL" misc_feature complement(351725..352489) /gene="yafV" /locus_tag="STM0308" /note="C-N hydrolase family amidase; Provisional; Region: PRK10438" /db_xref="CDD:182461" misc_feature complement(order(351995..352000,352055..352060, 352064..352069,352142..352144,352157..352159, 352169..352171,352346..352348,352364..352366)) /gene="yafV" /locus_tag="STM0308" /note="putative active site [active]" /db_xref="CDD:143599" misc_feature complement(order(352067..352069,352169..352171, 352364..352366)) /gene="yafV" /locus_tag="STM0308" /note="catalytic triad [active]" /db_xref="CDD:143599" misc_feature complement(order(351728..351748,351752..351763, 351800..351802,351806..351811,351815..351817, 351827..351853,351857..351859,351941..351946, 351950..351958,351962..351967,351974..351979, 352037..352039,352043..352057,352064..352066, 352151..352153,352163..352168)) /gene="yafV" /locus_tag="STM0308" /note="multimer interface [polypeptide binding]; other site" /db_xref="CDD:143599" misc_feature complement(order(351728..351748,351752..351763, 351845..351853,351941..351946,351950..351958, 351962..351967,351974..351979,352037..352039, 352043..352057,352064..352066,352151..352153, 352163..352168)) /gene="yafV" /locus_tag="STM0308" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143599" regulatory complement(352498..352503) /regulatory_class="ribosome_binding_site" /gene="yafV" /locus_tag="STM0308" /note="putative RBS for yafV; RegulonDB:STMS1H000666" gene complement(352598..355058) /gene="yafH" /locus_tag="STM0309" /db_xref="GeneID:1251828" CDS complement(352598..355042) /gene="yafH" /locus_tag="STM0309" /EC_number="1.3.99.-" /note="similar to E. coli putative acyl-CoA dehydrogenase (AAC73325.1); Blastp hit to AAC73325.1 (826 aa), 95% identity in aa 13 - 826" /codon_start=1 /transl_table=11 /product="putative acyl-CoA dehydrogenase" /protein_id="NP_459307.1" /db_xref="GeneID:1251828" /translation="MMILSIIATVVLLGALFYHRVSLFLSSLILLAWTAALGVAGLWS IWLLVPLAIILVPFNLTPMRKSMISAPVFRGFRKVMPPMSRTEKEAIDAGTTWWEGDL FQGKPDWKKLHNYPQPQLTAEEQAFLDGPVEEACRMANDFQITHELADLPPELWAYLK EHRFFAMIIKKEYGGLEFSAYAQSRVLQKLSGVSGILAITVGVPNSLGPGELLQHYGT EEQKNHYLPRLARGQEIPCFALTSPEAGSDAGAIPDTGVVCMGEWQGQQVLGMRLTWN KRYITLAPIATVLGLAFKLSDPDRLLGGEEELGITCALIPTSTPGVEIGRRHFPLNVP FQNGPTRGNDIFVPIDYIIGGPKMAGQGWRMLVECLSVGRGITLPSNSTGGVKSVALA TGAYAHIRRQFKISIGKMEGIEEPLARIAGNAYVMDAAASLITYGIMLGEKPAVLSAI VKYHCTHRGQQSIIDAMDITGGKGIMLGESNFLARAYQGAPIAITVEGANILTRSMMI FGQGAIRCHPYVLEEMAAAQNNDVNAFDKLLFKHIGHVGSNTVRSFWLGLTRGLTSHT PTGDATKRYYQHLNRLSANLALLSDVSMAVLGGSLKRRERISARLGDVLSQLYLASAV LKRYDDEGRHEADLPLVHWGVQDALYRAEQAMDDLLQNFPNRVVAGLLTAMIFPTGRH YLAPSDKLDHAVAKILQVPNATRSRIGRGQYLTPAEHNPVGLLEEALRDVIAADPIHQ RICKELGKNLPFTRLDELARNALAKGLIDKDEAAILAKAEESRLRSINVDDFEPEALA TKPVKLPEKVRKVEAA" misc_feature complement(352601..355036) /gene="yafH" /locus_tag="STM0309" /note="acyl-CoA dehydrogenase FadE; Region: FadE_coli; NF038187" /db_xref="CDD:439499" regulatory complement(355053..355058) /regulatory_class="ribosome_binding_site" /gene="yafH" /locus_tag="STM0309" /note="putative RBS for yafH; RegulonDB:STMS1H000667" gene 355270..355860 /gene="ghmA" /locus_tag="STM0310" /db_xref="GeneID:1251829" regulatory 355270..355275 /regulatory_class="ribosome_binding_site" /gene="ghmA" /locus_tag="STM0310" /note="putative RBS for ghmA; RegulonDB:STMS1H000668" CDS 355282..355860 /gene="ghmA" /locus_tag="STM0310" /EC_number="5.-.-.-" /note="similar to E. coli phosphoheptose isomerase (AAC73326.1); Blastp hit to AAC73326.1 (192 aa), 97% identity in aa 1 - 192" /codon_start=1 /transl_table=11 /product="phosphoheptose isomerase" /protein_id="NP_459308.1" /db_xref="GeneID:1251829" /translation="MYQDLIRNELNEAAETLANFLKDDANIHAIQRAAVLLADSFKAG GKVLSCGNGGSHCDAMHFAEELTGRYRENRPGYPAIAISDVSHISCVSNDFGYDYIFS RYVEAVGREGDVLLGISTSGNSGNVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEI RVPHFGYADRIQEIHIKVIHILIQLIEKEMVK" misc_feature 355282..355857 /gene="ghmA" /locus_tag="STM0310" /note="D-sedoheptulose 7-phosphate isomerase; Region: gmhA; PRK00414" /db_xref="CDD:179012" misc_feature order(355318..355320,355330..355332,355372..355374, 355381..355383,355441..355443,355459..355464, 355795..355800,355810..355812,355819..355821, 355831..355833,355843..355845) /gene="ghmA" /locus_tag="STM0310" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:240139" misc_feature order(355435..355443,355636..355644,355651..355653, 355780..355782,355795..355797) /gene="ghmA" /locus_tag="STM0310" /note="active site" /db_xref="CDD:240139" gene 356063..356840 /gene="yafJ" /locus_tag="STM0311" /db_xref="GeneID:1251830" regulatory 356063..356068 /regulatory_class="ribosome_binding_site" /gene="yafJ" /locus_tag="STM0311" /note="putative RBS for yafJ; RegulonDB:STMS1H000669" CDS 356073..356840 /gene="yafJ" /locus_tag="STM0311" /note="similar to E. coli putative amidotransferase (AAC73327.1); Blastp hit to AAC73327.1 (255 aa), 93% identity in aa 1 - 255" /codon_start=1 /transl_table=11 /product="putative glutamine amidotransferase" /protein_id="NP_459309.1" /db_xref="GeneID:1251830" /translation="MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGK GCRTFKDPQPSYHSPIAKLVQNYPIKSCSVIAHIRQANRGEVALENTHPFTRELWGRN WTYAHNGQLNGYKSLETGNFRPVGETDSEKAFCWLLHKLTQRYPRTPGNMTAVFKYIA TLATVLREKGVFNMLLSDGRYVMAFCSTHLHWITRRAPFGVATLVDQDMEIDFSSQTT PNDVVTVIATQPLTGNETWQKIMPGEWALFCLGERII" misc_feature 356073..356828 /gene="yafJ" /locus_tag="STM0311" /note="Glutamine amidotransferases class-II; Region: GATase_4; pfam13230" /db_xref="CDD:433047" misc_feature order(356076..356078,356307..356309,356394..356402, 356457..356459) /gene="yafJ" /locus_tag="STM0311" /note="putative active site [active]" /db_xref="CDD:238889" misc_feature order(356211..356213,356220..356225,356358..356360, 356430..356435,356496..356498) /gene="yafJ" /locus_tag="STM0311" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:238889" gene complement(356811..357565) /gene="yafK" /locus_tag="STM0312" /db_xref="GeneID:1251831" CDS complement(356811..357551) /gene="yafK" /locus_tag="STM0312" /note="similar to E. coli orf, hypothetical protein (AAC73328.1); Blastp hit to AAC73328.1 (246 aa), 90% identity in aa 1 - 246" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459310.1" /db_xref="GeneID:1251831" /translation="MRKIAFFLAMLLMPCVSFAGLLSSSSPVTPVSKEYKQQLMGSPV YIQIFKEERTLDLYVKMGEQYQLLDSYKICNYSGGLGPKRRQGDFKSPEGFYSVQRNQ LKPDSRFYKAINIGFPNAYDRAHGYDGKYLMIHGACVSVGCYAMTDSGIDEIFQFVTA ALVFGQPSVQVSIYPFRMTDANMQRHKYSYYKDFWAQLKPGYDYFEQTHKPPTVSIVD GRYVVSKPLSHEVVQPQLASNYTLSEAK" misc_feature complement(356814..357551) /gene="yafK" /locus_tag="STM0312" /note="peptidoglycan meso-diaminopimelic acid protein amidase; Region: LdtF_DpaA_YafK; NF040599" /db_xref="CDD:468573" regulatory complement(357560..357565) /regulatory_class="ribosome_binding_site" /gene="yafK" /locus_tag="STM0312" /note="putative RBS for yafK; RegulonDB:STMS1H000670" gene 357788..358856 /gene="dinP" /locus_tag="STM0313" /db_xref="GeneID:1251832" regulatory 357788..357793 /regulatory_class="ribosome_binding_site" /gene="dinP" /locus_tag="STM0313" /note="putative RBS for dinP; RegulonDB:STMS1H000671" CDS 357801..358856 /gene="dinP" /locus_tag="STM0313" /note="devoid of proofreading; damage-inducible protein P; similar to E. coli damage-inducible protein P; putative tRNA synthetase (AAC73335.1); Blastp hit to AAC73335.1 (351 aa), 91% identity in aa 1 - 351" /codon_start=1 /transl_table=11 /product="DNA polymerase IV" /protein_id="NP_459311.1" /db_xref="GeneID:1251832" /translation="MRKIIHVDMDCFFAAVEMRDNPALRDIPIAIGGSRERRGVISTA NYPARQFGVRSAMPTAMALKLCPHLTLLPGRFDAYKEASRHVRDIFSRYTSLIEPLSL DEAWLDVTDSPHCYGSATLIAREIRQTIFNELQLTASAGVAPVKFLAKIASDLNKPNG QYVITPADVPDFLKTLPLAKIPGVGKVSAAKLENMGLRTCGDIQQCDLAMLLKRFGKF GRVLWERSQGIDERDVNSERLRKSVGVERTLAEDIHEWSDCEAIIEHLYPELERRLAI VKPDLLIARQGVKLKFNDFQQTTQEHVWPQLNKEDLITTARKTWDERRGERGVRLVGL HVTLLDPQLERQLVLGL" misc_feature 357825..358853 /gene="dinP" /locus_tag="STM0313" /note="DNA polymerase IV; Validated; Region: PRK02406" /db_xref="CDD:235035" gene 359075..360207 /locus_tag="STM0314" /note="pseudogene; frameshift relative to E. coli probable peptide chain release factor (GB:AAC73340.1)" /pseudo /db_xref="GeneID:1251833" gene 360188..360818 /gene="prfH" /locus_tag="STM0315" /db_xref="GeneID:1251834" regulatory 360188..360193 /regulatory_class="ribosome_binding_site" /gene="prfH" /locus_tag="STM0315" /note="putative RBS for prfH; RegulonDB:STMS1H000673" CDS 360204..360818 /gene="prfH" /locus_tag="STM0315" /note="similar to E. coli probable peptide chain release factor (AAC73340.1); Blastp hit to AAC73340.1 (166 aa), 82% identity in aa 2 - 163" /codon_start=1 /transl_table=11 /product="putative peptide chain release factor" /protein_id="NP_459312.1" /db_xref="GeneID:1251834" /translation="MILLQLSSAQGPDECCLAVKKALDCLTKEAAREKVSLTRLETEP GRLPDTLRSALVSLDGEKAMAFSERWCGTLLWICTSPYRPHHGRKNWYVGIGRFSADE HIQSDEIRFETLRSSGPGGQHVNKTDSAVRATHLASGISVKVQSERSQHANKRLARLL IAWRLEQQRQNECAALKSERRLFHHQIERGNPLRIFKGMAFTPQ" misc_feature 360207..360806 /gene="prfH" /locus_tag="STM0315" /note="putative peptide chain release factor H; Region: release_prfH; TIGR03072" /db_xref="CDD:213768" gene complement(360974..362444) /gene="pepD" /locus_tag="STM0316" /db_xref="GeneID:1251835" CDS complement(360974..362431) /gene="pepD" /locus_tag="STM0316" /note="similar to E. coli aminoacyl-histidine dipeptidase (peptidase D) (AAC73341.1); Blastp hit to AAC73341.1 (485 aa), 92% identity in aa 1 - 485" /codon_start=1 /transl_table=11 /product="aminoacyl-histidine dipeptidase (peptidase D)" /protein_id="NP_459313.1" /db_xref="GeneID:1251835" /translation="MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIVSWAKEKG LYVDRDQVGNILIRKPATAGMENRKPVVLQAHLDMVPQKNSDTVHDFTTDPIQPYIDG EWVKARGTTLGADNGIGMASALAVLADDNVVHGPLEVLLTMTEEAGMDGAFGLQSGWL QADILINTDSEEEGEIYMGCAGGIDFTSNLPLTREAVPAGFACFKLTLKGLKGGHSGG EIHLGLGNANKLLARFLAGHAEELDLRLIDFNGGTLRNAIPREAFATLAVAADNVGAL KTLVNAYQDILKNELAEKEKNLTLQLNEVASDKAALTAPSRDTFVRLLNATPNGVIRN SDVAKGVVETSLNVGVVTMSDANVEIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEA KGSYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPDMDMVSIG PTITGPHSPDEQVHIESVGHYWTLLTELLKAIPAK" misc_feature complement(360977..362431) /gene="pepD" /locus_tag="STM0316" /note="aminoacyl-histidine dipeptidase; Provisional; Region: PRK15026" /db_xref="CDD:184986" misc_feature complement(order(361286..361291,361298..361303, 361310..361312,361421..361426,361433..361435, 361454..361459,361463..361468,361562..361564, 361574..361576,361733..361735,361763..361765)) /gene="pepD" /locus_tag="STM0316" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349885" regulatory complement(362439..362444) /regulatory_class="ribosome_binding_site" /gene="pepD" /locus_tag="STM0316" /note="putative RBS for pepD; RegulonDB:STMS1H000674" gene 362662..363138 /gene="gpt" /locus_tag="STM0317" /db_xref="GeneID:1251836" regulatory 362662..362667 /regulatory_class="ribosome_binding_site" /gene="gpt" /locus_tag="STM0317" /note="putative RBS for gpt; RegulonDB:STMS1H000675" CDS 362680..363138 /gene="gpt" /locus_tag="STM0317" /EC_number="2.4.2.22" /note="xanthine-guanine phosphoribosyltransferase. (SW:XGPT_SALTY)" /codon_start=1 /transl_table=11 /product="guanine-hypoxanthine phosphoribosyltransferase" /protein_id="NP_459314.1" /db_xref="GeneID:1251836" /translation="MSEKYVVTWDMLQIHARKLASRLMPSEQWKGIIAVSRGGLVPGA LLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIRE MYPKAHFVTIFAKPAGRPLVDDYVIDIPQNTWIEQPWDMGVVFVPPISGR" misc_feature 362680..363135 /gene="gpt" /locus_tag="STM0317" /note="xanthine-guanine phosphoribosyltransferase; Validated; Region: PRK09177" /db_xref="CDD:236395" misc_feature order(362785..362787,362791..362793,362941..362949, 362953..362967,363022..363024) /gene="gpt" /locus_tag="STM0317" /note="active site" /db_xref="CDD:206754" gene 363212..364471 /gene="yafA" /locus_tag="STM0318" /db_xref="GeneID:1251837" regulatory 363212..363217 /regulatory_class="ribosome_binding_site" /gene="yafA" /locus_tag="STM0318" /note="putative RBS for yafA; RegulonDB:STMS1H000676" CDS 363227..364471 /gene="yafA" /locus_tag="STM0318" /note="hypothetical protein in gpt-crl intergenic region. (SW:YAFA_SALTY)" /codon_start=1 /transl_table=11 /product="putative hydrolase of the alpha/beta superfamily" /protein_id="NP_459315.1" /db_xref="GeneID:1251837" /translation="MTQANLSETLFKPRFKHTETSTLVRRFNRGSQPPMQSALDGKNV PHWYRMINRLMWIWRGVDPREILDVQARIVMSDAERTDDDLYDTVIGYRGGNWIYEWA KQAMDWQQKACQEQDAMRSGRYWLHASTLYNIAAYPHLKGDELAEQAQALANRAYEEA AQRLPGSLREMEFAVPGGSPVTAFLHMPKGDGPFPTVLMCGGLDAMQTDYYTLYERYF APRGIAMLTLDMPSVGFSSKWKLTQDSSLLHQHVLKALPNVPWVDHTRVAAFGFRFGA NVAVRLAYLEAPRLKAVACLGPVVHALLSDPQRQSTVPEMYLDVLASRLGMHDASDEA LRVELNRYSLKVQGLLGRRCPTPMLSGFWKNDPFSPEEESRLITTSSSDGKLIEIPFN PVYRNFDRALQEITDWINHRLC" misc_feature 363227..364468 /gene="yafA" /locus_tag="STM0318" /note="esterase FrsA; Region: frsA; PRK05077" /db_xref="CDD:235337" gene 364517..364930 /gene="crl" /locus_tag="STM0319" /db_xref="GeneID:1251838" regulatory 364517..364522 /regulatory_class="ribosome_binding_site" /gene="crl" /locus_tag="STM0319" /note="putative RBS for crl; RegulonDB:STMS1H000677" CDS 364529..364930 /gene="crl" /locus_tag="STM0319" /note="similar to E. coli transcriptional regulator of cryptic csgA gene for curli surface fibers (AAC73344.1); Blastp hit to AAC73344.1 (133 aa), 83% identity in aa 1 - 133" /codon_start=1 /transl_table=11 /product="transcriptional regulator of cryptic csgA gene for curli surface fibers" /protein_id="NP_459316.1" /db_xref="GeneID:1251838" /translation="MTLPSGHPKSRLIKKFTALGPYIREGQCEDNRFFFDCLAVCVNV KPAPEKREFWGWWMELEAQEKRFTYRYQFGLFDKEGNWTVVPINETEVVERLEYTLRE FHEKLRDLLISMELALEPSDDFNDEPVKLSA" misc_feature 364529..364909 /gene="crl" /locus_tag="STM0319" /note="sigma factor-binding protein Crl; Region: PRK10984" /db_xref="CDD:182882" gene complement(364981..366179) /gene="phoE" /locus_tag="STM0320" /db_xref="GeneID:1251839" CDS complement(364981..366033) /gene="phoE" /locus_tag="STM0320" /note="outer membrane pore protein E precursor. (SW:PHOE_SALTY)" /codon_start=1 /transl_table=11 /product="outer membrane pore protein e (e,ic,nmpab)" /protein_id="NP_459317.1" /db_xref="GeneID:1251839" /translation="MNKSTLAIVVSIIASASVHAAEVYNKNGNKLDVYGKVKAMHYMS DYDSKDGDQSYVRFGFKGETQINDQLTGYGRWEAEFASNKAESDSSQQKTRLAFAGLK LKDIGSFDYGRNLGALYDVEAWTDMFPEFGGDSSAQTDNFMTKRASGLATYRNTDFFG IVDGLDLTLQYQGKNEDRDVKKQNGDGFGTSVSYDFGGSDFAVSGAYTLSDRTREQNL QRRGTGDKAEAWATGVKYDANDIYIATFYSETRNMTPVSGGFANKTQNFEAVIQYQFD FGLRPSLGYVLSKGKDIEGVGSEDLVNYIDVGATYYFNKNMSAFVDYKINQLDSDNTL GINDDDIVAIGLTYQF" misc_feature complement(364984..366033) /gene="phoE" /locus_tag="STM0320" /note="phosphoporin PhoE; Region: PRK10159" /db_xref="CDD:182275" misc_feature complement(order(364984..364986,364990..364992, 364996..364998,365083..365085,365092..365097, 365587..365592,365596..365598,365695..365703, 365731..365745,365749..365754,365785..365796, 365800..365802,365806..365814,365818..365820, 365836..365850,365911..365919,365923..365925, 365941..365943,365947..365949)) /gene="phoE" /locus_tag="STM0320" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238208" misc_feature complement(order(365596..365598,365656..365658, 365749..365751,365863..365865,365926..365928)) /gene="phoE" /locus_tag="STM0320" /note="eyelet of channel [active]" /db_xref="CDD:238208" regulatory complement(366039..366044) /regulatory_class="ribosome_binding_site" /gene="phoE" /locus_tag="STM0320" /note="putative RBS for phoE; RegulonDB:STMS1H000678" protein_bind complement(366111..366129) /gene="phoE" /locus_tag="STM0320" /note="putative binding site for PhoB, RegulonDB: STMS1H000341" /bound_moiety="PhoB" protein_bind complement(366129..366147) /gene="phoE" /locus_tag="STM0320" /note="putative binding site for PhoB, RegulonDB: STMS1H000340" /bound_moiety="PhoB" regulatory complement(366155..366163) /regulatory_class="minus_10_signal" /gene="phoE" /locus_tag="STM0320" /note="putative -10_signal for phoE; RegulonDB:STMLTH004580" regulatory complement(366171..366179) /regulatory_class="minus_35_signal" /gene="phoE" /locus_tag="STM0320" /note="putative -35_signal for phoE; RegulonDB:STMLTH004580" protein_bind complement(366251..366269) /note="putative binding site for PhoB, RegulonDB: STMS1H000339" /bound_moiety="PhoB" gene 366309..367419 /gene="proB" /locus_tag="STM0321" /db_xref="GeneID:1251840" regulatory 366309..366314 /regulatory_class="ribosome_binding_site" /gene="proB" /locus_tag="STM0321" /note="putative RBS for proB; RegulonDB:STMS1H000679" CDS 366316..367419 /gene="proB" /locus_tag="STM0321" /EC_number="2.7.2.11" /note="similar to E. coli gamma-glutamate kinase (AAC73346.1); Blastp hit to AAC73346.1 (367 aa), 96% identity in aa 1 - 367" /codon_start=1 /transl_table=11 /product="gamma-glutamate kinase" /protein_id="NP_459318.1" /db_xref="GeneID:1251840" /translation="MSDSQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHR IVIVTSGAIAAGREHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHIGQML LTRADMEDRERFLNARDTLRALLDNHIVPVINENDAVATAEIKVGDNDNLSALAAILA GADKLLLLTDQQGLFTADPRSNPQAELIKDVYGVDDALRSIAGDSVSGLGTGGMSTKL QAADVACRAGIDTIIASGSKPGVIGDVMEGISVGTRFHAQASPLENRKRWIFGAPPAG EITVDEGATAAMLERGSSLLPKGIKSVTGNFSRGEVIRICNLQGRDIAHGVSRYNSDA LRRIAGHHSQQIDAILGYEYGPVAVHRDDMITR" misc_feature 366328..367413 /gene="proB" /locus_tag="STM0321" /note="glutamate 5-kinase; Region: proB; TIGR01027" /db_xref="CDD:162163" gene 367418..368681 /gene="proA" /locus_tag="STM0322" /db_xref="GeneID:1251841" regulatory 367418..367423 /regulatory_class="ribosome_binding_site" /gene="proA" /locus_tag="STM0322" /note="putative RBS for proA; RegulonDB:STMS1H000680" CDS 367431..368681 /gene="proA" /locus_tag="STM0322" /EC_number="1.2.1.41" /note="gamma-glutamyl phosphate reductase (GPR). (SW:PROA_SALTY)" /codon_start=1 /transl_table=11 /product="gamma-glutamylphosphate reductase" /protein_id="NP_459319.1" /db_xref="GeneID:1251841" /translation="MLEQMGIAAKAASYKLALLSSGEKNRVLEKIADELEAQMESILS ANVQDVEQARANGLSEAMLDRLALTPARLKAIADDVRQVCNLADPVGQVIDGGLLDSG LRLERRRVPLGVVGVIYEARPNVTVDVASLCLKTGNAVILRGGKETYRTNAATVRVIQ KALKACGLPEAAVQAIDNPDRSLVNEMLRMDKYIDMLIPRGGAGLHKLCREQSTIPVI TGGIGVCHIFVDSSADIAPALKIIVNAKTQRPSTCNTVETLLVHQDIAERFLPALSKQ MAESGVTLHGDETVMQVLHGPAKLVPLKPEELDNEFLSLDLNVVVVENMDGAIAHIRE HGTQHSDAILTCDMHNAARFVNEVDSAAVYVNASTRFTDGGQFGLGAEVAVSTQKLHA RGPMGLEALTTYKWIGFGDGTIRA" misc_feature 367431..368678 /gene="proA" /locus_tag="STM0322" /note="gamma-glutamyl phosphate reductase; Provisional; Region: proA; PRK00197" /db_xref="CDD:234685" misc_feature 368187..368189 /gene="proA" /locus_tag="STM0322" /note="putative catalytic cysteine [active]" /db_xref="CDD:143398" gene 368807..368879 /gene="thrW" /locus_tag="STM0323" /db_xref="GeneID:1251842" tRNA 368807..368879 /gene="thrW" /locus_tag="STM0323" /product="tRNA-Thr" /db_xref="GeneID:1251842" gene 369153..369380 /locus_tag="STM0324" /db_xref="GeneID:1251843" regulatory 369153..369158 /regulatory_class="ribosome_binding_site" /locus_tag="STM0324" /note="putative RBS for STM0324; RegulonDB:STMS1H000682" CDS 369159..369380 /locus_tag="STM0324" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_446779.1" /db_xref="GeneID:1251843" /translation="MFRTETATGTVTTLPIVITLTIIKHCCPHYFPADKVLSVDTFHL QRMEEAFRTGIVVTTTSGAHTSPQIMAFQ" gene complement(369198..369998) /locus_tag="STM0325" /db_xref="GeneID:1251844" CDS complement(369198..369998) /locus_tag="STM0325" /note="similar to E. coli IS3 putative transposase (AAC75150.1); Blastp hit to AAC75150.1 (288 aa), 83% identity in aa 30 - 267" /codon_start=1 /transl_table=11 /product="putative IS3 transposase" /protein_id="NP_459321.1" /db_xref="GeneID:1251844" /translation="MLASTPPTSTGVFNRALSSLAIACICKRYVWHQRRHQINRRQRF HLVCDNVFREAFSDAKQRYGAPRLTDELRAQGYQFNVKTVAASLRRQGLRAKASRRFR PVSYRKHGLPVSENLLKQDFYASGPNQKWVGDITYLRTGEGWLYLAVVIDLWSRSVIG WSMSSRMTAQLACDALQMALWRRKCPENVIVHTDRGGQYCSTDYQSLLKRHNLRGSMS ARGCCYDNACAESFFHTLKVECIHGEDFVSREIMRTAVFNYSECDYNR" misc_feature complement(369201..>369914) /locus_tag="STM0325" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene 369925..370630 /locus_tag="STM0326" /note="pseudogene; frameshift; putative HSP70 class molecular chaperone" /pseudo /db_xref="GeneID:1251845" gene 370726..371063 /locus_tag="STM0327" /db_xref="GeneID:1251846" regulatory 370726..370731 /regulatory_class="ribosome_binding_site" /locus_tag="STM0327" /note="putative RBS for STM0327; RegulonDB:STMS1H000684" CDS 370740..371063 /locus_tag="STM0327" /note="similar to E. coli orf, hypothetical protein (AAC74880.1); Blastp hit to AAC74880.1 (119 aa), 66% identity in aa 13 - 119" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459322.1" /db_xref="GeneID:1251846" /translation="MVNFKDKSMPTAIEKALDFIGGMNTSASVPHSMDESTAKGILKY LHDLGVPVSPEVVVARGEQEGWNPEFTKKVAGWAEKVASGNRILIKNPEYFSTYMQEQ LKELV" misc_feature 370764..371051 /locus_tag="STM0327" /note="Domain of unknown function (DUF1889); Region: DUF1889; pfam08986" /db_xref="CDD:462649" gene 371397..372642 /locus_tag="STM0328" /db_xref="GeneID:1251847" regulatory 371397..371402 /regulatory_class="ribosome_binding_site" /locus_tag="STM0328" /note="putative RBS for STM0328; RegulonDB:STMS1H000685" CDS 371404..372642 /locus_tag="STM0328" /note="similar to E. coli putative transport protein (AAC74668.1); Blastp hit to AAC74668.1 (417 aa), 34% identity in aa 33 - 407" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_459323.3" /db_xref="GeneID:1251847" /translation="MCMKNNIEETIGKYLPILMILPLAGLAELASLYSIQALLPKLSE VYNIPLNQVGMILSAEVGFLALAMLFSGTLSDRFGRKPIIFYSLLAGGILTLLCATAS SWPMLVVYRALLGIAVSGITAAVTVYISEEVSPALAGIVTGYFIFGNSLGSMSGRVFA TLMMEHVSIDTIFFIFGGVLIAMALAVKLFLPTSRQFVPTPSLQLGAVLKGGLEHFKN IRVSLCFVIGFILFGSFTSIFNFLAFYLHRPPYELSYTWIGLIPVSFSLTFFLAPYAA RVALNIGSMNALSMLIICMMVGAFLTLIAPSLWVFISGIVLLSVAFFSAHSTVLAWVS SRSPNAKGQATSFYLLCYYSGGAVMGYLNGYLFSWQGWNAIAASCLMMLGIGLFICRF IFAKYEKQPQIKKQSVQESF" misc_feature 371455..372573 /locus_tag="STM0328" /note="Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily; Region: MFS_NepI_like; cd17324" /db_xref="CDD:340882" misc_feature order(371485..371490,371497..371502,371509..371511, 371605..371607,371755..371760,371764..371772, 371779..371781,371839..371841,371848..371853, 371860..371862,372085..372087,372094..372099, 372106..372114,372121..372123,372205..372207, 372217..372219,372364..372369,372379..372381, 372391..372393,372436..372438,372445..372450, 372457..372462,372469..372471) /locus_tag="STM0328" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340882" gene 372766..374195 /locus_tag="STM0329" /db_xref="GeneID:1251848" regulatory 372766..372771 /regulatory_class="ribosome_binding_site" /locus_tag="STM0329" /note="putative RBS for STM0329; RegulonDB:STMS1H000686" CDS 372774..374195 /locus_tag="STM0329" /note="similar to E. coli 3-isopropylmalate isomerase dehydratase subunit (AAC73183.1); Blastp hit to AAC73183.1 (466 aa), 52% identity in aa 2 - 465; subunit with LeuD" /codon_start=1 /transl_table=11 /product="putative 3-isopropylmalate isomerase" /protein_id="NP_459324.1" /db_xref="GeneID:1251848" /translation="MSAKTLYEKLVESHTIRELDNEGHVLLYIDRSILNEYTSPQAFS GLRERGRTVRHPDTFLLNIDHVNPTRSQRDDLMTDPGGQLQVDYFRENAADFGITLFD VLDPRQGIEHVVAHEQGLVMPGMVIAAGDSHTTTYGAFGALGFGIGTSEIEHLLATQT LVYRKLKTMRVSVQGELPFACSAKDIVLELLERIGADGATGYAIEFVGEAISALSVEG RMTLCNMAVEAGARGAIIAPDKKVFDYIYGKPQMPVGELWQQALLEWSQLSSDADAVF DKTVAINCHDLEPKVTWGISPDQTGSITGRVPFPEQETNPLKRLALEKALHYMGLTAG MLLKDIRISHAFIGSCTNGRIEDLRAVAKVLEGRKIASHVRGIIVPGSTMVRRQAEEE GLAKIFIAAGFEWRQSGCSMCLAMNEDVLSPGDRCASGTNRNFPGRQGAGARTHLMSP AMVAAAAVAGHLVDVRSLLQAGE" misc_feature 372774..374189 /locus_tag="STM0329" /note="3-isopropylmalate dehydratase large subunit; Region: PRK12466" /db_xref="CDD:183543" misc_feature order(372876..372878,372885..372887,373164..373169, 374013..374015,374070..374072,374085..374087) /locus_tag="STM0329" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:153133" misc_feature order(373170..373172,373821..373823,374001..374003, 374010..374015,374067..374069) /locus_tag="STM0329" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:153133" gene 374190..374823 /locus_tag="STM0330" /db_xref="GeneID:1251849" regulatory 374190..374195 /regulatory_class="ribosome_binding_site" /locus_tag="STM0330" /note="putative RBS for STM0330; RegulonDB:STMS1H000687" CDS 374197..374823 /locus_tag="STM0330" /note="similar to E. coli isopropylmalate isomerase subunit (AAC73182.1); Blastp hit to AAC73182.1 (201 aa), 39% identity in aa 3 - 193" /codon_start=1 /transl_table=11 /product="putative 3-isopropylmalate isomerase (dehydratase), subunit with LeuC" /protein_id="NP_459325.1" /db_xref="GeneID:1251849" /translation="MDTFKQISGRIAPMLEPNIDTDVIMPKQFLKGIDRQGLDKGVFF DRRFMAGGQPNPDFILNMPGWQSATFLLVGPNFGCGSSREHAVWGLKQLGVRGLIGST FAGIFDDNCQRNGILTVSLDEPALARLAQLAASADTNSITVSLDRCEITTAEETISFV ISELKRAMLAAGEDAIAWTLQYLPEIENFEVAHYSRRPWLKRPASPRG" misc_feature 374200..374796 /locus_tag="STM0330" /note="3-isopropylmalate dehydratase small subunit [Amino acid transport and metabolism]; Region: LeuD; COG0066" /db_xref="CDD:439836" gene 374831..375716 /locus_tag="STM0331" /db_xref="GeneID:1251850" regulatory 374831..374836 /regulatory_class="ribosome_binding_site" /locus_tag="STM0331" /note="putative RBS for STM0331; RegulonDB:STMS1H000688" CDS 374838..375716 /locus_tag="STM0331" /note="similar to E. coli putative isomerase (AAC74264.1); Blastp hit to AAC74264.1 (219 aa), 34% identity in aa 11 - 217" /codon_start=1 /transl_table=11 /product="putative fumarylacetoacetate (FAA) hydrolase" /protein_id="NP_459326.1" /db_xref="GeneID:1251850" /translation="MKLVQYLVNGGKRYGIMQETGIIDLSQRLGDKYPTLKSLLCANA LTDAALWCDEPADYYYQEVTFLPVIDDPQKIICVGMNYADKRIEFNETNPAPTLFVRF ADSQTGHNGLLLKPENTNEFDYEGELAVVIGRRCSRVSAEDALDYVAGYSCYMDGSVR DWQHSWFTAGKNWPSTGSFGPCLVTTDDIPDPQMLRLLTRLNGREVQNESTANMIHPI ASLIAYISTFTLLSPGDTILTGSPGGVGKKRVPPLFLHDGDVIEVEIEHIGTLRNVVR DSRYLTSSVSWHDGRK" misc_feature 375036..375665 /locus_tag="STM0331" /note="2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport and catabolism]; Region: YcgM; COG0179" /db_xref="CDD:439949" gene 375712..376630 /locus_tag="STM0332" /db_xref="GeneID:1251851" regulatory 375712..375717 /regulatory_class="ribosome_binding_site" /locus_tag="STM0332" /note="putative RBS for STM0332; RegulonDB:STMS1H000689" CDS 375716..376630 /locus_tag="STM0332" /note="similar to E. coli orf, hypothetical protein (AAC73780.1); Blastp hit to AAC73780.1 (254 aa), 33% identity in aa 15 - 129" /codon_start=1 /transl_table=11 /product="putative hydrolase or acyltransferase" /protein_id="NP_459327.1" /db_xref="GeneID:1251851" /translation="MSTLIECGASPFIPGFALKDVRLENGLTVRVAIGGSGSPLVLLH GHPQNHTTWRKVAPTLAQNHTVILPDLRGYGDSDKPTSDPAHRTYSKRTMAQDIVMLM DALGFSRFAFVGHDRGGRVGHRLALDYPDRVTCCTFIDIAPTATMYALTDKSFATRYF WWFFLIQPFPLPETMIAHDPAFFLRKHISGQLKIEGATSQEAFNEYLRCYQNPEMIHA ICEDYRAAATIDLDDDAADTSARIRCPLQLLWGGLGTVGQLYNVVGTWKEKALNVQGE ALPCGHSPQEECPEYFIQKLQSFLHSVL" misc_feature 375788..376624 /locus_tag="STM0332" /note="2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; Region: MenH; COG0596" /db_xref="CDD:440361" gene 376656..377629 /locus_tag="STM0333" /db_xref="GeneID:1251852" regulatory 376656..376661 /regulatory_class="ribosome_binding_site" /locus_tag="STM0333" /note="putative RBS for STM0333; RegulonDB:STMS1H000690" CDS 376664..377629 /locus_tag="STM0333" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74869.1); Blastp hit to AAC74869.1 (314 aa), 44% identity in aa 2 - 307" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459328.1" /db_xref="GeneID:1251852" /translation="MKTTPVGKKHRQPLEGWPSVEDLFVFVTVARNGGFARAALELGL SPSYISKRIAILEKCLNARLFFRNNRVMRLTPEGENALGGAMQVVSEMDGFVSRLDNQ RGVLAGNITINCSFGFGHKYVAEALSSFMIAYPDITVKLTLTDREVDLVEEGIDIEIR VGDDINELYIARQLATNRRILCASPEYLERHGKPESVSALVQHDCLMIQEKNSAFGNW ILTDGKQQTHCRLNGFHSSNSGSVVLIWALKGHGITLRSEWDVAQYIERGELVRVLPQ WYQEANIWAVYTRRSSSSDRIKICIDFLTEHLAQCLPGGKAPGVL" misc_feature 376724..376900 /locus_tag="STM0333" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature 376985..377575 /locus_tag="STM0333" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_9; cd08479" /db_xref="CDD:176168" misc_feature order(377015..377017,377027..377029,377144..377146, 377186..377188,377192..377194,377381..377383, 377432..377434,377510..377512) /locus_tag="STM0333" /note="putative effector binding pocket [active]" /db_xref="CDD:176168" misc_feature order(377018..377023,377033..377038,377042..377047, 377054..377056,377066..377068,377072..377092, 377273..377275,377363..377377,377396..377401, 377408..377410) /locus_tag="STM0333" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176168" gene complement(377574..377854) /locus_tag="STM0334" /db_xref="GeneID:1251853" CDS complement(377574..377846) /locus_tag="STM0334" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459329.1" /db_xref="GeneID:1251853" /translation="MTLKPGEKSGNNGGIYVEVGPRGGIKDNFATIAETKPRHQRNAL KATGCWQKEHLTVNVSQSIWRHDSWRRLITVRPVLYRLASIVQDAP" misc_feature complement(<377763..377837) /locus_tag="STM0334" /note="YjzC-like protein; Region: YjzC; pfam14168" /db_xref="CDD:404951" regulatory complement(377849..377854) /regulatory_class="ribosome_binding_site" /locus_tag="STM0334" /note="putative RBS for STM0334; RegulonDB:STMS1H000691" gene 378531..378935 /locus_tag="STM0335" /db_xref="GeneID:1251854" regulatory 378531..378536 /regulatory_class="ribosome_binding_site" /locus_tag="STM0335" /note="putative RBS for STM0335; RegulonDB:STMS1H000692" CDS 378537..378935 /locus_tag="STM0335" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_459330.1" /db_xref="GeneID:1251854" /translation="MKLIIILLLALFPLCSSASNHYALVFENNTILLVLNLKCSPCDL NCANIQYQIFNKETESVISGVAKPVTTGIENNFRGYMMRNNNTFYTLIESDNENVWDM SVEEKGTQQNKDAVQKVKYQLNAIFDNGTC" gene complement(378982..379748) /gene="stbE" /locus_tag="STM0336" /db_xref="GeneID:1251855" CDS complement(378982..379740) /gene="stbE" /locus_tag="STM0336" /note="similar to E. coli periplasmic chaperone, required for type 1 fimbriae (AAC77272.1); Blastp hit to AAC77272.1 (241 aa), 30% identity in aa 32 - 241" /codon_start=1 /transl_table=11 /product="putative fimbriae; chaparone" /protein_id="NP_459331.1" /db_xref="GeneID:1251855" /translation="MRNYRQWLVFSKVILTLLGLTGWYGPAQAAVNIDRTRIIFASDE VAQSLTLSNDNTTPMLLQVWTDAGNIDASPDNSKTPLVALPPVFKMQPGELRTLRLLL SSRQQLATDRESLFWLNIYQIPPVTQDIKNHPRKLVLPLRLRLKILIRPTGLKAPTEA EEKKLRFIAKENTIRIVNPTSWYMSLTLTTDDKKSIGDIMVAPKTARDVPLTRSPTPG ASINYAVISDSGNWRQYTAILEKYISENDFTPEF" misc_feature complement(378985..379683) /gene="stbE" /locus_tag="STM0336" /note="fimbrial assembly chaperone; Region: PRK15246" /db_xref="CDD:185158" gene complement(379706..381038) /gene="stbD" /locus_tag="STM0337" /db_xref="GeneID:1251856" CDS complement(379706..381031) /gene="stbD" /locus_tag="STM0337" /codon_start=1 /transl_table=11 /product="putative fimbriae; usher" /protein_id="NP_459332.1" /db_xref="GeneID:1251856" /translation="MLFSFRTLLFITSLFVSAGTWSSCIKVTDKSALSDAAIKAGYTA QNWIGATDTNTGNIGLPTVISVSNSETFQPSGTLLASGIGNFLTAATGTPYSSKQVLY RCDTADAGKLYEMYSTNGDSAFAGAFFTPEVEGAYYDVERNVAVRMTNLSTGEYYSRF WKERQLTADSWFQDDKYIYIPASAFSNVLYEMFKIDSRKYFAYQNPMDRDTWTQPRGY IAFKGPGLITERIKAGLDHASDYYGWPSYWPGAWSTYNSVTYVRGALCKITDYPAIVK IPPVAVGILAAGGNSQAPFHVSLECESGAVSSALPSTSAANVAMGFVVNQPTAVAAAR RLGLTTSAGGLSWLLDTHYGEPGVASGVGIRIYNDAGTPINLLPDRIKTGTGNARGWY GYKDLTTRVSSGSVETYSGDFTASLEAIGGQTVTAGSVNAQLQAVVSFQ" misc_feature complement(379709..381031) /gene="stbD" /locus_tag="STM0337" /note="fimbrial usher protein StbD; Region: PRK15247" /db_xref="CDD:185159" regulatory complement(379743..379748) /regulatory_class="ribosome_binding_site" /gene="stbE" /locus_tag="STM0336" /note="putative RBS for stbE; RegulonDB:STMS1H000693" regulatory complement(381033..381038) /regulatory_class="ribosome_binding_site" /gene="stbD" /locus_tag="STM0337" /note="putative RBS for stbD; RegulonDB:STMS1H000694" gene complement(381036..383603) /gene="stbC" /locus_tag="STM0338" /db_xref="GeneID:1251857" CDS complement(381036..383597) /gene="stbC" /locus_tag="STM0338" /note="similar to E. coli outer membrane protein; export and assembly of type 1 fimbriae, interrupted (AAC77273.1); Blastp hit to AAC77273.1 (878 aa), 30% identity in aa 30 - 870" /codon_start=1 /transl_table=11 /product="putative fimbriae; usher" /protein_id="NP_459333.1" /db_xref="GeneID:1251857" /translation="MSPTINLNRKSLALLIAIVCSGSAQGEEYYFDPALLQGATYGQN IARFNERQTPSGDYLADVYVNGTLVTSSTNIRFNAVKEGQQTEPCLPLSVMKAAQIKS LPATDAATECRPLREWVPHAGWQFDSATLRLLLTIPMTELTHKPRGYISPSEWDSGAL ALFLRHNTNWTHTENTDSHYRYQYLWSGLNMGVNLGLWQVRHQSNLRYANSNQSGSAW RYNSVRTWVQRPVASVNSILSLGDSYTDSSLFGSLSFNGAKLVTDERMRPQGKRGYAP EVRGVAASSAHVVVKQLGKVIYETNVPPGPFYIDDLYNTRYQGDLEVEVIEASGKTSR FTVPYSSVPDSVRPGNWHYSLAFGRVRQYYDIENRFFEGTFQHGVNNTITLNLGSRIA QRYQAWLAGGVWATGMGAFGLNATWSNARAEHNDRQQGWRAELSYSKTFTTGTNLVLA AYRYSTNGFRDLQDVLGVRREAKTGIDYYSDTLHQRNRLSATVSQPLGRLGTLNLSAS TADYYNNQSRITQLQMGYSNQWRNISYGVNIARQRTTWDYDRFYHGVNEPLDVSSRQK YTETTMSFNVSIPLDWGENRTSVAMNYNQSSQSRSSTVSMTGSSGENSDLSWSVYGGY ERYRNSNSDSSAPTTFGGNLQQNTRFGALRANYDQGDNYRQEGLGASGTLVLHPGGLT AGPYTSDTFALIHADGAQGAIVQNGQGAVVDRFGYAILPSLSPYRVNNVTLDTRKMRS DAELTGGSQQIVPYAGAIARVNFATISGKAVLISVKMPDGGIPPMGADVFNGEGTNIG MVGQSGQIYARIAHPSGSLLVRWGTGANQRCRVAYQLDLHTKEPFLYLNKICEKE" misc_feature complement(381039..383597) /gene="stbC" /locus_tag="STM0338" /note="fimbrial outer membrane usher protein; Region: PRK15248" /db_xref="CDD:185160" gene complement(383581..384357) /gene="stbB" /locus_tag="STM0339" /db_xref="GeneID:1251858" CDS complement(383581..384342) /gene="stbB" /locus_tag="STM0339" /note="similar to E. coli probable pilin chaperone similar to PapD (AAC73251.1); Blastp hit to AAC73251.1 (246 aa), 40% identity in aa 1 - 240" /codon_start=1 /transl_table=11 /product="putative fimbriae; chaparone" /protein_id="NP_459334.1" /db_xref="GeneID:1251858" /translation="MKMDTRHSALYYLIVFLFLALPATASWASVTILGSRIIYPSTAS SVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMPLIATPPVFRIQPKAGQVVRVIY NNTKKLPQDRESVFWFNVLQVPPTNIGSDSGQNKMLVMLRSRIKLFYRPDGLGKPDNL AKKLQIKTVNKGSGKSGIVIVNPQPWFASLSNLNVKVNGASYNLDADMIAPFSSQTWW LPGKRSLKSFSGTVTVTLVNDLGARISESYDVPHH" misc_feature complement(383584..384342) /gene="stbB" /locus_tag="STM0339" /note="fimbrial chaperone; Region: PRK15249" /db_xref="CDD:237930" regulatory complement(383598..383603) /regulatory_class="ribosome_binding_site" /gene="stbB" /locus_tag="STM0339" /note="putative RBS for stbC; RegulonDB:STMS1H000695" regulatory complement(384352..384357) /regulatory_class="ribosome_binding_site" /gene="stbB" /locus_tag="STM0339" /note="putative RBS for stbB; RegulonDB:STMS1H000696" gene complement(384404..384948) /gene="stbA" /locus_tag="STM0340" /db_xref="GeneID:1251859" CDS complement(384404..384940) /gene="stbA" /locus_tag="STM0340" /note="similar to E. coli major type 1 subunit fimbrin (pilin) (AAC77270.1); Blastp hit to AAC77270.1 (182 aa), 28% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="putative fimbriae; major subunit" /protein_id="NP_459335.1" /db_xref="GeneID:1251859" /translation="MSMKKYLAMITGSLLVSSSAMAVSDNTITFQGEVSDETCSVVIN GNQAKPVVLLPTVSTKDLSEQGKTAGPITFDIGLSGCTGSQDKTTKISTVFVGNQVTS NGNLGNTGSAKNVEVQLLDTSGEPINLTGGFTGDGDLQLEPNASEASATYTARYYSTG KAEAGTVAATLQYAVSYK" misc_feature complement(384407..384934) /gene="stbA" /locus_tag="STM0340" /note="Pilin (type 1 fimbrial protein) [Cell motility]; Region: FimA; COG3539" /db_xref="CDD:442760" regulatory complement(384943..384948) /regulatory_class="ribosome_binding_site" /gene="stbA" /locus_tag="STM0340" /note="putative RBS for stbA; RegulonDB:STMS1H000697" gene 385574..386338 /locus_tag="STM0341" /db_xref="GeneID:1251860" CDS 385574..386338 /locus_tag="STM0341" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459336.1" /db_xref="GeneID:1251860" /translation="MMDAVTFRIVMNETIFLLDKRVVFDSTKMTLSHGNEIIRISEAE THLLLAFWHGLYKKEDIIHFVWENRGGCVSESSYYKLINQMRNDFSSIGLQSSDIVTR PRVGVSLSVAIEPIKKITSLKVSDENVKGTTTRENIFYKNKRHSVFVVLTGAILLALL YGVFTIYKAPVRNSPDSFFTYLGEYNDYAIYKTKEDKVTLSEVVFAFNSLKIKIYRQN GRHLYYIREPNMNIFLQCLNPVEMAVPKCITVKERY" misc_feature 385634..385924 /locus_tag="STM0341" /note="DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; Region: CadC1; COG3710" /db_xref="CDD:442924" gene 386306..386610 /locus_tag="STM0342" /db_xref="GeneID:1251861" regulatory 386306..386311 /regulatory_class="ribosome_binding_site" /locus_tag="STM0342" /note="putative RBS for STM0342; RegulonDB:STMS1H000698" CDS 386311..386610 /locus_tag="STM0342" /note="unknown (gi|6707277)" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459337.1" /db_xref="GeneID:1251861" /translation="MYYSKRTLLIIFVIFIAIVAIGSIIALEWVNRDSYRTNNLICTT KSEAYIAPRKLYMDGGLVLDLKSGRITLHYDVTTDTKEKRLFFVISASANCAERV" gene 387105..388684 /locus_tag="STM0343" /db_xref="GeneID:1251862" regulatory 387105..387110 /regulatory_class="ribosome_binding_site" /locus_tag="STM0343" /note="putative RBS for STM0343; RegulonDB:STMS1H000699" CDS 387110..388684 /locus_tag="STM0343" /note="similar to E. coli orf, hypothetical protein (AAC75237.1); Blastp hit to AAC75237.1 (518 aa), 31% identity in aa 10 - 512" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase domain 1" /protein_id="NP_459338.1" /db_xref="GeneID:1251862" /translation="MKVRKLFLMLFIAVPLIVMILVGLLAGIFQLKRDIAVSANTLLR FSADISAASWQVAGKAARLAESSCTDTLKELSRTRAFTPYVRDIGFLENGDITCSFVT GTERYHFSRLAGLSLPASYPERWLRSIGSMAEGPDRLVVVYVKKVAADKAAFVIVDSQ YVQELMEILAAERASAFSLTFGAGEAITSAAKLRGKAFLTQRFTSTDHTIQLMVRTPF STLSAYWLQNLFIFIPLSLCLSVGMMLFYRRWYLKRLSLAREIARGITHNEFTVHYQP VFNVKHGSCGGVEALMRWPQPDGRFITPDIFITAAENEGMIIPLSRHLFELIAHDVIN WTVPDDFYISVNISPAHLMDDGFIQDIEALRTRLGTITLMLELTERSLIVEPSQVAEK LSTLREKGVLIAIDDFGTGYCSLSYLQQLPVDSLKIDRTFIDTIDTSSDDVPVLDTII TLSQRLGLNVVAEGVSTQHQLRYILSHGVGFVQGFLYARPMGTNDFMSWLGKSAQRQN GLLKGESGSASDLVAE" misc_feature 387110..388636 /locus_tag="STM0343" /note="Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal transduction mechanisms]; Region: YjcC; COG4943" /db_xref="CDD:443970" gene 388778..389527 /locus_tag="STM0344" /db_xref="GeneID:1251863" regulatory 388778..388783 /regulatory_class="ribosome_binding_site" /locus_tag="STM0344" /note="putative RBS for STM0344; RegulonDB:STMS1H000700" CDS 388784..389527 /locus_tag="STM0344" /codon_start=1 /transl_table=11 /product="putative response regulator" /protein_id="NP_459339.1" /db_xref="GeneID:1251863" /translation="MSQNNYLIDKRVILDCERMTLSCAGESITISESERSLLIAFYEG LFKKDDLINYVWGRKGVVVSDASYYKLINQLRGSFDKIGLKGASVVTRPRVGVLLSVS IEPLSDEAQNTPLPAVAETEVSTVEVRHDDTIITPTPGAVNKKDWLYFCLAALLMFFM MYKVKGENIDYFTLQGSYDGYTFYSVGHDKTHLTDIVEAYSEMSNEIHKQNGKIIYYI RVPNTNIFVQCLNQLDIAEPKCISIKERY" misc_feature 388799..389110 /locus_tag="STM0344" /note="DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; Region: CadC1; COG3710" /db_xref="CDD:442924" misc_feature 388919..>389323 /locus_tag="STM0344" /note="DNA-binding transcriptional activator CadC; Provisional; Region: PRK10153" /db_xref="CDD:236658" gene 389494..389988 /locus_tag="STM0345" /db_xref="GeneID:1251864" regulatory 389494..389499 /regulatory_class="ribosome_binding_site" /locus_tag="STM0345" /note="putative RBS for STM0345; RegulonDB:STMS1H000701" CDS 389500..389988 /locus_tag="STM0345" /note="unknown (gi|6707277)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459340.1" /db_xref="GeneID:1251864" /translation="MHFHKRTLLSVATLGMLAVSVVLMVVWVRNSNHSSINTNEFLCT TRTVTTIQPKDIHADGSLVLDFKMKRITFQYEIKTKDNGVKILYRDVYMKNLHRTAPG VYTFEVSQVKVFATDTAGELLSHLRVLHPEAANEIRISKVGEKTFFYSLNRQLYNVCT AQ" gene 390383..390913 /locus_tag="STM0346" /db_xref="GeneID:1251865" regulatory 390383..390388 /regulatory_class="ribosome_binding_site" /locus_tag="STM0346" /note="putative RBS for STM0346; RegulonDB:STMS1H000702" CDS 390389..390913 /locus_tag="STM0346" /note="unknown (gi|6707276)" /codon_start=1 /transl_table=11 /product="putative outer membrane protein; homolog of ail and ompX" /protein_id="NP_459341.1" /db_xref="GeneID:1251865" /translation="MKRRSSFLVFLGLLLASPLALANDQHTVSFGYAQTHLSSLKNSD SKDLRGFNFKYRYEFNETWGMLGSFTATRNEMENYTWKEGKLHKNGSDSVDYGSLMFG PTYRFNDYVSLYGNAGIATMKFNKHSKEDSFAYGAGVIFNPVKSISIDASWEASRFFA VDTNTFGVSVGYRF" misc_feature 390461..390910 /locus_tag="STM0346" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" gene 391057..391698 /locus_tag="STM0347" /db_xref="GeneID:1251866" CDS 391057..391698 /locus_tag="STM0347" /note="unknown (gi|6707275)" /codon_start=1 /transl_table=11 /product="putative response regulator" /protein_id="NP_459342.1" /db_xref="GeneID:1251866" /translation="MINSLSEQLPLKTIGIVLTDDYYTYLGIASLFEDGKCFMFPLNG EYNSCQISASEDIIIIIDGRVLIQGVWKGFKALMQHYPHARRIWLTRRDIGKLYPHGC DRDPDIDPDLAKPVFIEHFIKYACANDVAVGEIAPLTKKEEELLWHFLYKKSMSQIAS SYGMSRKTLYIHRLRICRKYGFKRFFHLLFIYQRSRHIFASKICRVDKNADQA" misc_feature <391246..391650 /locus_tag="STM0347" /note="DNA-binding transcriptional regulator, CsgD family [Transcription]; Region: CsgD; COG2771" /db_xref="CDD:442052" gene 391703..391933 /locus_tag="STM0348" /db_xref="GeneID:1251867" regulatory 391703..391708 /regulatory_class="ribosome_binding_site" /locus_tag="STM0348" /note="putative RBS for STM0348; RegulonDB:STMS1H000703" CDS 391709..391933 /locus_tag="STM0348" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459343.1" /db_xref="GeneID:1251867" /translation="MKKLTMRECESINPTMLLAIKILISALDEKTKIRLREHIEKTEQ EIASSIHDSIMTETFLQQMKDIRYILNIVP" gene 391984..392350 /locus_tag="STM0349" /db_xref="GeneID:1251868" regulatory 391984..391989 /regulatory_class="ribosome_binding_site" /locus_tag="STM0349" /note="putative RBS for STM0349; RegulonDB:STMS1H000704" CDS 391991..392350 /locus_tag="STM0349" /note="similar to E. coli orf, hypothetical protein (AAC77104.1); Blastp hit to AAC77104.1 (128 aa), 35% identity in aa 15 - 127" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_459344.1" /db_xref="GeneID:1251868" /translation="MKKILVCFVGLALTACSANSLNYGAEQVRVMTSEPGKECSYLGD ITGSQGNFFTGGWTSNSNLETGARNDLKNKAYKMGGNTVVLLTQRAGQTGSSWHGSGS SKQTNVTLSGNVYRCPR" misc_feature 392045..392341 /locus_tag="STM0349" /note="Domain of unknown function (DUF4156); Region: DUF4156; pfam13698" /db_xref="CDD:433411" gene complement(392420..393948) /locus_tag="STM0350" /db_xref="GeneID:1251869" CDS complement(392420..393931) /locus_tag="STM0350" /note="similar to E. coli putative resistance protein (AAC73673.1); Blastp hit to AAC73673.1 (457 aa), 37% identity in aa 7 - 457" /codon_start=1 /transl_table=11 /product="homology to outer membrane efflux protein" /protein_id="NP_459345.3" /db_xref="GeneID:1251869" /translation="MRTALIRMISKHNDGNGIMKITFTGYRQTATLATLAFVTTLAGC TMAPKHERPASPTAMVYPYATSTVSGAPDAADIGWRDFFHDPLLQELIAIALRNNRDL RKAGLNVEAARALYRIQRAEMLPTLGIATAMDASRTPADLSVMDESEINRRYEAAGAT TAWELDLWGRVRSLSDQALAAYMALDETYIAARMSLVSEVASAWLTLRADRELLRLTE DTLAAQKSSYTLTTQLARTGNATQLDLRMAEIALRSAEINRAAYTRQLARDRNALELL LGQPLTPELSRRLNEAVTLTEGAIPTTLPGGLPSDLLVRRPDIRAAEYRLRGANARIG AARAAFFPTISLTGSAGTASASLSGLFEPGSGSWRFLPQITLPLFHGGALRADLDRAH VQKQIEIARYENVIQQAFRDVADGLAGQRTLNDQVQSEQRAVEASQIAYELAGLRFQE GVDDYLTLLDTHRMLYGAQQRLVRTRLMQQLNIINLYKALGGGWREYSEKKQG" misc_feature complement(392453..393829) /locus_tag="STM0350" /note="efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family; Region: outer_NodT; TIGR01845" /db_xref="CDD:273830" gene complement(393894..397067) /locus_tag="STM0351" /db_xref="GeneID:1251870" CDS complement(393894..397061) /locus_tag="STM0351" /note="similar to E. coli integral transmembrane protein; acridine resistance (AAC76298.1); Blastp hit to AAC76298.1 (1034 aa), 42% identity in aa 3 - 1030" /codon_start=1 /transl_table=11 /product="putative cation efflux system protein" /protein_id="NP_459346.1" /db_xref="GeneID:1251870" /translation="MKFTHFFIARPIFAIVLSLLMLLAGAIAFLKLPLSEYPAVTPPT VQVSASYPGANPQVIADTVAAPLEQVINGVDGMLYMNTQMAIDGRMVISIAFEQGTDP DMAQIQVQNRVSRALPRLPEEVQRIGVVTEKTSPDMLMVVHLVSPQKRYDSLYLSNFA IRQVRDELARLPGVGDVLVWGAGEYAMRVWLDPAKIANRGLTASDIVTALREQNVQVA AGSVGQQPEASAAFQMTVNTLGRLTSEEQFGEIVVKIGADGEVTRLRDVARVTLGADA YTLRSLLNGEAAPALQIIQSPGANAIDVSNAIRGKMDELQQNFPQDIEYRIAYDPTVF VRASLQSVAITLLEALVLVVLVVVMFLQTWRASIIPLVAVPVSLVGTFALMHLFGFSL NTLSLFGLVLSIGIVVDDAIVVVENVERHISQGKSPGEAAKKAMDEVTGPILSITSVL TAVFIPSAFLAGLQGEFYRQFALTIAISTILSAINSLTLSPALAAILLRPHHDTAKAD WLTRLMGTVTGGFFHRFNRFFDSASNRYVSAVRRAVRGSVIVMVLYAGFVGLTWLGFH QVPNGFVPAQDKYYLVGIAQLPSGASLDRTEAVVKQMSAIALAEPGVESVVVFPGLSV NGPVNVPNSALMFAMLKPFDEREDPSLSANAIAGKLMHKFSHIPDGFIGIFPPPPVPG LGATGGFKLQIEDRAELGFEAMTKVQSEIMSKAMQTPELANMLASFQTNAPQLQVDID RVKAKSMGVSLTDIFETLQINLGSLYVNDFNRFGRAWRVMAQADAPFRMQQEDIGLLK VRNAKGEMIPLSAFVTIMRQSGPDRIIHYNGFPSVDISGGPAPGFSSGQATDAIEKIV RETLPEGMVFEWTDLVYQEKQAGNSALAIFALAVLLAFLILAAQYNSWSLPFAVLLIA PMSLLSAIVGVWVSGGDNNIFTQIGFVVLVGLAAKNAILIVEFARAKEHDGADPLTAV LEASRLRLRPILMTSFAFIAGVVPLVLATGAGAEMRHAMGIAVFAGMLGVTLFGLLLT PVFYVVVRRMALKRENRVDSHDQQA" misc_feature complement(393930..397061) /locus_tag="STM0351" /note="Multidrug efflux pump subunit AcrB [Defense mechanisms]; Region: AcrB; COG0841" /db_xref="CDD:440603" regulatory complement(393943..393948) /regulatory_class="ribosome_binding_site" /locus_tag="STM0350" /note="putative RBS for STM0350; RegulonDB:STMS1H000705" gene complement(397058..398290) /locus_tag="STM0352" /db_xref="GeneID:1251871" CDS complement(397058..398284) /locus_tag="STM0352" /note="similar to E. coli acridine efflux pump (AAC73565.1); Blastp hit to AAC73565.1 (397 aa), 31% identity in aa 38 - 383" /codon_start=1 /transl_table=11 /product="putative cation efflux pump" /protein_id="NP_459347.3" /db_xref="GeneID:1251871" /translation="MRRTFKIMLIAGVIAAIGGVIYMAGEALWDKDNAVGPPASAPPP PSVPVAKALSRTLAPTAEFTGFLAAPETVELRSRVGGTLDAISVPEGRLVSRGQLLFQ IDPRPFEVALDTAVAQLRQAEVLARQAQADFDRIQRLVASGAVSRKNADDVTATRNAR QAQMQSAKAAVAAARLELSWTRITAPIAGRVDRILVTRGNLVSGGVAGNATLLTTIVS HNPMYVYFDIDEATWLKALRHTRSDKNPPVVNMGLTTDNGLPYQGVLDFMGNQMNRST GTIRARAVIPDPDGMLSPGLFARISLPIGEPRETVLIDDLAVSADQGKNYVLIVGKEN QVEYRPVELGQMVDGFRVVTQGVLPGEKIILKGLVRPGMTVAPRLVPMRQNVTDKQTA TLTKADGDSAPKAVRQ" misc_feature complement(397154..398134) /locus_tag="STM0352" /note="Multidrug efflux pump subunit AcrA (membrane-fusion protein) [Cell wall/membrane/envelope biogenesis, Defense mechanisms]; Region: AcrA; COG0845" /db_xref="CDD:440606" regulatory complement(397062..397067) /regulatory_class="ribosome_binding_site" /locus_tag="STM0352" /note="putative RBS for STM0351; RegulonDB:STMS1H000706" regulatory complement(398285..398290) /regulatory_class="ribosome_binding_site" /locus_tag="STM0352" /note="putative RBS for STM0352; RegulonDB:STMS1H000707" gene 398554..400849 /locus_tag="STM0353" /db_xref="GeneID:1251872" regulatory 398554..398559 /regulatory_class="ribosome_binding_site" /locus_tag="STM0353" /note="putative RBS for STM0353; RegulonDB:STMS1H000708" CDS 398561..400849 /locus_tag="STM0353" /EC_number="3.6.1.-" /note="similar to E. coli putative ATPase (AAC73586.1); Blastp hit to AAC73586.1 (834 aa), 42% identity in aa 99 - 831, 45% identity in aa 4 - 63" /codon_start=1 /transl_table=11 /product="putative cation transport ATPase" /protein_id="NP_459348.1" /db_xref="GeneID:1251872" /translation="MSQSENRHDTISLLIEGMTCASCVARVEKGIKAVPGVTDATVNL ATERATVRGTASAEAVIAAIEKTGYKARPIETAGQGEDDSEEKKEAERVRLKRDLILA SVLALPVFVLEMGSHLIPGMHEWVIKTIGLQQSWYWQFALTLLVLTIPGRRFYLKGFP ALARLAPDMNSLVAVGTAAAFGYSLVATFTPDLLPEGTVNVYYEAAAVIVALILLGRF LEARAKGRTSEAIKRLVGLQARVAHVLREGRIVDIPVDEVVLGDCVEVRPGERIPVDG EVTEGRSFVDESMITGEPIPVEKSAGSAVVGGTVNQKGALTLRATAVGGQTMLAQIIR LVEQAQGSKLPIQAVVDKVTLWFVPMVMLIAALTFVVWLAFGPSPALTFALINGVAVL IIACPCAMGLATPTSIMVGTGRGAEMGVLFRKGEALQLLKDAKVVAVDKTGTLTEGRP VLTDLDVASGFERREVLAKVAAVESRSEHPIARAIVVSAEEEGIALPGMSGFESVTGM GVYATVDGTRVDVGADRYMREIGVDISGFATTAERLGQEGKSPLYAAIDGQLAAIIAV ADPIKPSTPAAINALHQLGIKVAMITGDNARTAQAIARQLGIDDVVAEVLPEGKVEAI RRLKAAYGQVAFVGDGINDAPALAESDVGLAIGTGTDVAVESADVVLMSGNLQGVPNA IALSKATIRNIHQNLFWAFAYNTALIPVAAGALFPVWGILLSPVFAAGAMAMSSVFVL GNALRLRRFRAPMATPSDTSTT" misc_feature 398588..398785 /locus_tag="STM0353" /note="Copper chaperone CopZ [Inorganic ion transport and metabolism]; Region: CopZ; COG2608" /db_xref="CDD:442020" misc_feature 398849..400804 /locus_tag="STM0353" /note="P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B; Region: P-type_ATPase_Cu-like; cd02094" /db_xref="CDD:319783" misc_feature order(399746..399748,399752..399754,400667..400669) /locus_tag="STM0353" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" misc_feature order(399878..399886,400073..400075,400121..400129, 400214..400216,400334..400342,400400..400402, 400409..400411,400418..400420,400475..400477, 400484..400486) /locus_tag="STM0353" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319783" misc_feature order(400670..400672,400754..400756,400766..400768) /locus_tag="STM0353" /note="putative Cu binding site [ion binding]; other site" /db_xref="CDD:319783" gene 400853..401325 /locus_tag="STM0354" /db_xref="GeneID:1251873" regulatory 400853..400858 /regulatory_class="ribosome_binding_site" /locus_tag="STM0354" /note="putative RBS for STM0354; RegulonDB:STMS1H000710" CDS 400861..401325 /locus_tag="STM0354" /note="similar to E. coli putative transcriptional regulator (AAC73589.1); Blastp hit to AAC73589.1 (135 aa), 42% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_459349.1" /db_xref="GeneID:1251873" /translation="MNIGKAAKASKVSAKMIRYYEQIGLIPAASRTDSGYRAYTQADV NQLHFIRRARDLGFSVAEISDLLNLWNNQSRQSADVKRLAQTHIDELDRRIQNMQHMA QTLKALIHCCAGDALPDCPILHTLGQPDDSEPEARTGAVLRRPRRHGLAKRL" misc_feature 400861..401238 /locus_tag="STM0354" /note="Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators; Region: HTH_CueR; cd01108" /db_xref="CDD:133383" misc_feature order(400864..400872,400912..400914,400963..400971) /locus_tag="STM0354" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133383" misc_feature order(401005..401007,401014..401016,401026..401031, 401056..401058,401068..401070,401089..401094, 401101..401103,401110..401112,401122..401124, 401140..401142,401152..401154,401161..401166, 401185..401187,401200..401214,401218..401220, 401224..401226,401233..401238) /locus_tag="STM0354" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133383" misc_feature order(401089..401091,401194..401196,401218..401220) /locus_tag="STM0354" /note="copper binding site [ion binding]; other site" /db_xref="CDD:133383" gene 401396..401597 /locus_tag="STM0355" /db_xref="GeneID:1251874" regulatory 401396..401401 /regulatory_class="ribosome_binding_site" /locus_tag="STM0355" /note="putative RBS for STM0355; RegulonDB:STMS1H000711" CDS 401403..401597 /locus_tag="STM0355" /codon_start=1 /transl_table=11 /product="putative copper chaperone" /protein_id="NP_459350.1" /db_xref="GeneID:1251874" /translation="MQFHIDDMTCGGCASTVKKTILTLDANATVRTDPATRLVDVETS LSAEQIAAALQKAGFPPRER" misc_feature 401403..401591 /locus_tag="STM0355" /note="Copper chaperone CopZ [Inorganic ion transport and metabolism]; Region: CopZ; COG2608" /db_xref="CDD:442020" gene 401883..403143 /locus_tag="STM0356" /db_xref="GeneID:1251875" regulatory 401883..401888 /regulatory_class="ribosome_binding_site" /locus_tag="STM0356" /note="putative RBS for STM0356; RegulonDB:STMS1H000712" CDS 401890..403143 /locus_tag="STM0356" /note="similar to E. coli putative transport protein (AAC77235.1); Blastp hit to AAC77235.1 (425 aa), 28% identity in aa 33 - 412" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459351.1" /db_xref="GeneID:1251875" /translation="MYTPLNWTTTQRHVAFACFTSWMLDAFDFFILVFVLSDLAEWFH ASVSDVSIAIMLTLAVRPIGALLFGRMAEKYGRRPILMLNILFFTVFELLSAWSPTFM AFLIFRVMYGVAMGGIWGVASSLAMETIPDRSRGLMSGIFQAGYPCGYLFASVIFGLF YSMVGWRGMFLIGALPVVLLPYIWFKVPESPVWLAARARKENTALLPVLRKQWKLCLY LVLVMAFFNFFSHGTQDLYPTFLKMQHGFDPHLISIIAIFYNIAAMLGGIFYGTLSER IGRKKAIMIAAFLALPVLPLWAFSSGSFTIGLGAFLMQFMVQGAWGVVPTWLNELVPA NARAVLPGFVYQLGNLLASVNATLQARIAETHGGNYGLAMAIVAGAVAILICVFVAFG RETRGVVISGTDSDALPESAISHRT" misc_feature 401932..403053 /locus_tag="STM0356" /note="Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily; Region: MFS_SV2_like; cd17316" /db_xref="CDD:340874" misc_feature order(401962..401967,401974..401979,401986..401988, 402082..402084,402232..402237,402241..402249, 402256..402258,402316..402318,402325..402330, 402337..402339,402556..402558,402565..402570, 402577..402585,402592..402594,402676..402678, 402688..402690,402835..402840,402850..402852, 402862..402864,402910..402912,402919..402924, 402931..402936,402943..402945) /locus_tag="STM0356" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340874" gene 403326..405290 /gene="mod" /locus_tag="STM0357" /db_xref="GeneID:1251876" regulatory 403326..403331 /regulatory_class="ribosome_binding_site" /gene="mod" /locus_tag="STM0357" /note="putative RBS for mod; RegulonDB:STMS1H000713" CDS 403332..405290 /gene="mod" /locus_tag="STM0357" /note="type iii restriction-modification system stylti enzyme mod (stylti methyltransferase) (SW:T3MO_SALTY)" /codon_start=1 /transl_table=11 /product="DNA methylase; restriction system" /protein_id="NP_459352.1" /db_xref="GeneID:1251876" /translation="MLKDNQKHNESVAPNSAFLSELQRALPEFFTADRYNEQGELIAK GGFDLARFERALKARNIDELTSGYQIDFIGKDYAKKQAGEKSVTVIVPDVEHNTLAEN KNSHNLFLTGDNLDVLRHLQNNYADTVDMIYIDPPYNTGSDGFVYPDHFEYSDRALQD MFGLNDTELARLKSIQGKSTHSAWLSFMYPRLFLARKLLKDTGFIFISIDDNEYANLK LMMDEIFGEGGFVTNVMWKRKKEISNDSDNVSIQGEYILVYAKTGQGALRLEPLSKEY IQKSYKEPTEQFPEGKWRPVPLTVSKGLSGGGYTYKITTPNGTVHERLWAYPEASYQK LVADNLVYFGKDNGGIPQRVMYAHHSKGQPTTNYWDNVASNKEGKKEILDLFGDNVFD TPKPTALLKKIIKLAIDKDGVVLDFFAGSGTTAHAVMALNEEDGGQRTFILCTIDQAL SNNTIAKKAGYNTIDEISRERITRVAAKIRANNPATNSDLGFKHYRFATPTQQTLDDL DSFDIATGHFINTSGQLAAFTESGFTDMINPFSARGLGVPGGASGEETLLTTWLVADG YKMDIDVQTVDFSGYCARYVDNTRLYLIDERWGTEQTRDLLNHIGTHQLPVQTIVIYG YSFDLESIRELEIGLKQLDQKVNLVKRY" misc_feature 403536..>404828 /gene="mod" /locus_tag="STM0357" /note="Adenine specific DNA methylase Mod [Replication, recombination and repair]; Region: Mod; COG2189" /db_xref="CDD:441792" misc_feature 404985..405275 /gene="mod" /locus_tag="STM0357" /note="Type III R-M EcoP15I C-terminal domain; Region: T3RM_EcoP15I_C; pfam18273" /db_xref="CDD:436377" gene 405293..408272 /gene="res" /locus_tag="STM0358" /db_xref="GeneID:1251877" regulatory 405293..405298 /regulatory_class="ribosome_binding_site" /gene="res" /locus_tag="STM0358" /note="putative RBS for res; RegulonDB:STMS1H000714" CDS 405300..408272 /gene="res" /locus_tag="STM0358" /note="type iii restriction-modification system stylti enzyme res (SW:T3RE_SALTY)" /codon_start=1 /transl_table=11 /product="DNA restriction (DNA helicase)" /protein_id="NP_459353.3" /db_xref="GeneID:1251877" /translation="MMNILLEELPHQEQALAAILASFTGIDHAQADHNHYANPLIKER YDDKANIDVKMETGTGKTYVYTRLMYELHQKYGLFKFVLVVPTPAIKEGARNFITSDY ARQHFSQFYENTRMELCTINAGDFKVKSGRKNFPAQLLSFTDASRRDSHTIQVLLINA QMLNSASMTRDDYDQTLLGGLTSPVKGLQMTRPVVIIDEPHRFARDNKFYRAIQAIQP QMIVRFGATFPDIVEGKGKNKCVRKDYYRRQPQFDLNAVDSFNDGLVKGIDIYYPNLP EEQANNRYIVDSVTAKKLILRRGSKIAEVGVGENLADVDAGFEGSIEYAGSKMLSNDL ELEAGMALVPGTFGASYQELIIQDAIDKHFDTEQANFLRSNEPENNAPRIKTLSLFFI DSIKSYRDDEGWLKVTFERLLKKKLTQLIDDYQRKTLPREVEYLSFLQATLASLHSDN QNVHAGYFGEDRGSGDEAIQAEVDDILKNKEKLLSFSDHHGNWETRRFLFSKWTLREG WDNPNVFVIAKLRSSGSESSKIQEVGRGLRLPVDENGHRVHQEEWPSRLSFLIGYDEK AFASMLVDEINRDSKVQLNEQKLDEAMITLIVTERQKVDPAFTELRLLEDLDDKKLIN RSNEFKPSVTLNGETKSGFAWLLEFYPELTQARVRADRIRDNKPASRLRVRLRKENWE QLSSIWEQFSRRYMLQFERSGASLEQIAAEVLRDPALYIRQKPSQVQQRLVSNEDNGR FEVAQREGELAASEFMAGMKYGHFLKQLALRTSLPVNVLHPVLMAMLRDVLHGDSRYL SEISLDNMTRALQTRINAHFAQRHDYLPLDFQASTSVFDSTARQFREEISAEIVGKNV DENAIDDPRSLYQIPPLRYDSVDPELPLLKYDYPQQVSVFGKLPKRAIQIPKYTGGST TPDFVYRIERQDADSVYLLVETKAENMRVGDQVILDAQRKFFDMLRRQNINVEFAEAT SAPAVFSTINGLIEGKAN" misc_feature 405303..408263 /gene="res" /locus_tag="STM0358" /note="type III restriction-modification system endonuclease; Region: PRK15483" /db_xref="CDD:237972" gene 408544..408650 /locus_tag="STM0359" /db_xref="GeneID:1251878" regulatory 408544..408549 /regulatory_class="ribosome_binding_site" /locus_tag="STM0359" /note="putative RBS for STM0359; RegulonDB:STMS1H000715" CDS 408549..408650 /locus_tag="STM0359" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459354.1" /db_xref="GeneID:1251878" /translation="MLNRYYRFAVEKDDPSEAPESGDKPDSQPQKKS" gene 408761..410170 /locus_tag="STM0360" /db_xref="GeneID:1251879" regulatory 408761..408766 /regulatory_class="ribosome_binding_site" /locus_tag="STM0360" /note="putative RBS for STM0360; RegulonDB:STMS1H000716" CDS 408767..410170 /locus_tag="STM0360" /EC_number="1.10.3.-" /EC_number="1.2.1.41" /note="similar to E. coli probable third cytochrome oxidase, subunit I (AAC74063.1); Blastp hit to AAC74063.1 (514 aa), 38% identity in aa 2 - 316, 38% identity in aa 381 - 512" /codon_start=1 /transl_table=11 /product="cytochrome BD2 subunit I" /protein_id="NP_459355.1" /db_xref="GeneID:1251879" /translation="MEFDAFFLARLQFAFTVSFHIIFPAITIGLASYLVVLEGLWLKT RNPVWRSLYQFWLKIFAVNFGMGVVSGLVMAYQFGTNWSGFSQFAGSITGPLLTYEVL TAFFLEAGFLGVMLFGWNKVGPGLHFLSTCMVALGTLMSTFWILASNSWMHTPQGFEI HNGQVVPVDWFAVIFNPSFPYRLLHMSVAAFLSSAMFVGASAAWHLLKGNDTPAIRRM FSMALWMAVVVAPVQALIGDMHGLNTLKHQPVKIAAIEGHWENTPGEPTPLTLVGWPD MEAERTRYALEIPALGSLILTHSLDKQVPALKDYPKEDRPNSTVVFWSFRLMVGMGVL MIFLGLASLWLRYRRRLYHSRPFMHFALWMGPSGLIAILAGWVTTEVGRQPWVVYGLL RTRDAVSAHSTLQMSISLLAFFVVYSLVFGVGYIYMIRLIQKGPQPAETPTAETDGRP ARPISAVGESLEQEKRE" misc_feature 408773..410101 /locus_tag="STM0360" /note="Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]; Region: AppC; COG1271" /db_xref="CDD:440882" gene 410159..411177 /locus_tag="STM0361" /db_xref="GeneID:1251880" regulatory 410159..410164 /regulatory_class="ribosome_binding_site" /locus_tag="STM0361" /note="putative RBS for STM0361; RegulonDB:STMS1H000717" CDS 410167..411177 /locus_tag="STM0361" /EC_number="1.10.3.-" /EC_number="1.2.1.41" /note="similar to E. coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); Blastp hit to AAC73828.1 (379 aa), 34% identity in aa 7 - 221, 22% identity in aa 121 - 366" /codon_start=1 /transl_table=11 /product="cytochrome BD2 subunit II" /protein_id="NP_459356.1" /db_xref="GeneID:1251880" /translation="MTIDLPVIWFAIIVFATLMYIVMDGFDLGVGILFPFIRDKHDRD VMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVITDALTIPLVVMLLGLIFRGVAFE FRFKATESHRAFWDKSFIVGSILATFAQGVVVGAVVSGFQVEGRTFSGSQLDWLTPFN LFCGVGLVVTYALLGATWLIMKSEDPLHSRMCALSRPLLIVLLLVMGGVSVWTPLTHD DIAERWFTLPNLYYFLPVPVLVLAFSVWLWRSVKKPESHARPFILTLGLIFLGFSGLG ISIWPNIIPPDISLYAAAAPPQSQSFMLVGALIIIPIILAYTFWSYYVFRGKVRHGEG YH" misc_feature 410179..411165 /locus_tag="STM0361" /note="Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]; Region: AppB; COG1294" /db_xref="CDD:440905" gene 411190..411418 /locus_tag="STM0362" /db_xref="GeneID:1251881" regulatory 411190..411195 /regulatory_class="ribosome_binding_site" /locus_tag="STM0362" /note="putative RBS for STM0362; RegulonDB:STMS1H000718" CDS 411194..411418 /locus_tag="STM0362" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459357.3" /db_xref="GeneID:1251881" /translation="MVAASRMDGRDMVRQRASAGGRRNVIQTAHDLRRISLLTDTPGR AFVAGESAFLSTDRRLSITFARLISPLNSG" gene 411510..412518 /locus_tag="STM0363" /db_xref="GeneID:1251882" regulatory 411510..411515 /regulatory_class="ribosome_binding_site" /locus_tag="STM0363" /note="putative RBS for STM0363; RegulonDB:STMS1H000719" CDS 411514..412518 /locus_tag="STM0363" /note="putative XylS/AraC transcriptional activator (gi|3094022)" /codon_start=1 /transl_table=11 /product="putative transcription regulator, AraC family" /protein_id="NP_459358.1" /db_xref="GeneID:1251882" /translation="MSPISCHSSAAPAMKKIFSVSDFIAFGERYGIDYRFPALPQYTQ SSPVLHGDIEEIALPGGICITRSDVHVLQPYETTSRHSSPLYMLVVLEGNVALAVNEQ TFLLSAGMAFCSQLSEQQTIRAHHGADSKLRTLSLGMYPDGGWRERLPVSLADEWENS ATSARVWQVPEFLLSGLRYAQQPGPHAASRQLMLEGIMLQLLGYALNLCQPATQKRGL PVTGEYQRLELIRRLLEQTPEKAYTLNELARRAAMSPSSLRCKFRHAYGCTVFDYLRD CRLARARRYLMEGYSVQQAAWMSGYQHATNFATAFRRRYGCSPGELRDASLTASRHCA " misc_feature <411952..412482 /locus_tag="STM0363" /note="HTH-type transcriptional activator RhaR; Region: PRK13500" /db_xref="CDD:184091" misc_feature 412240..412482 /locus_tag="STM0363" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:197666" gene 412664..414772 /gene="foxA" /locus_tag="STM0364" /db_xref="GeneID:1251883" CDS 412664..414772 /gene="foxA" /locus_tag="STM0364" /note="ferrioxamine B receptor precursor. (SW:FOXA_SALTY)" /codon_start=1 /transl_table=11 /product="ferrioxamine receptor" /protein_id="NP_459359.1" /db_xref="GeneID:1251883" /translation="MPLEMFMFATTRMALLIGGAIGGATFPLFAQETTKNDTVIVTSP VQSGATKLATPDIETPQSVSIITRQQFEEQGATSVRQAVSYTPGVYSNQIGASNRFDY IVLRGFSDGSLDNVYLDGLKMMGDTNSHSSLVVDPWFLEDIEVVRGPASVLYGRSSPG GIVALTSRKPAFDAGGEVKLFAGNNNQRGAAFDVTGPLDDNERVAARLSGMTRYADSQ FTPLKEERYALMPSLTWRITDRTRLDLMAYPHRDPEGGSHSGLPYQGTVVPYNGGKIS NTFFEGEDDYDKYDRRENMVGYNIEHLFDNGWSVRQKLRYLHTKVTLNQVYAAGWLNE TALNRGYSGSGEKMSAIALDNQLDGSVDTGAINHRLLVGIDYQDRSNHTTGYYGAFPP IDAFNPVYGAQPDYITLYSREKHKLRQTGYYLQDQMSWDRWRFTLGGRYDRVSVSNID KLHDSRSDLDKNNVSTRAALLYLFDNGVAPYLSYSTAFTPTSFADENGNVLEPMKGKQ WEAGVKYEPPGGNSQFSAAVYRINQTNIATKEEPTDPYRSIGEIESKGVELEAISHLS DSVRLQAAYTYTDIRYKKSSPQEQGKRAVYAPRNQASAWLSYDVKSGLLEGLTLGSGI RYVNGVTSDRLNTHTLPSYTLVDMVVGYDLSSIGLNGLSAQLNVNNLTDKRYVAACNS LSYCYFGAERSIVGSVSWAF" misc_feature 412697..414769 /gene="foxA" /locus_tag="STM0364" /note="Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid [Inorganic ion transport and metabolism]; Region: FhuE; COG4773" /db_xref="CDD:443805" gene complement(414813..415461) /gene="yahN" /locus_tag="STM0365" /db_xref="GeneID:1251884" CDS complement(414813..415445) /gene="yahN" /locus_tag="STM0365" /note="similar to E. coli putative cytochrome subunit of dehydrogenase (AAC73431.1); Blastp hit to AAC73431.1 (223 aa), 86% identity in aa 14 - 223" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_459360.1" /db_xref="GeneID:1251884" /translation="MEPFHAVVLTVSLFVLTFFNPGANLFVVVQTSLASGRRAGVITG LGVATGDAFYSGLGLFGLATLITQCEAVFSLIKIVGGAYLLWFAWNSIRHQATPQMST LQTPIAAPWTIFFRRGLMTDLSNPQTVLFFISIFSVTLSAETPTWARLMAWAGIVLSS VIWRIFLSQAFSLPAVRRAYGRIQRIASRVIGAIIGMFALRLLYEGVTHR" misc_feature complement(414840..415388) /gene="yahN" /locus_tag="STM0365" /note="The Resistance to Homoserine/Threonine (RhtB) Family protein; Region: 2A76; TIGR00949" /db_xref="CDD:273358" regulatory complement(415456..415461) /regulatory_class="ribosome_binding_site" /gene="yahN" /locus_tag="STM0365" /note="putative RBS for yahN; RegulonDB:STMS1H000720" gene 415665..415952 /gene="yahO" /locus_tag="STM0366" /db_xref="GeneID:1251885" regulatory 415665..415670 /regulatory_class="ribosome_binding_site" /gene="yahO" /locus_tag="STM0366" /note="putative RBS for yahO; RegulonDB:STMS1H000721" CDS 415677..415952 /gene="yahO" /locus_tag="STM0366" /note="similar to E. coli orf, hypothetical protein (AAC73432.1); Blastp hit to AAC73432.1 (91 aa), 72% identity in aa 1 - 91" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459361.1" /db_xref="GeneID:1251885" /translation="MKTGYKVMLGALAFVVTNVYAAEIMKKTDFDKVASEYTKIGTIS TTGEMSPLDAREDLIKKADEKGADVVVLTSGQTENKIHGTADIYKKK" misc_feature 415677..415949 /gene="yahO" /locus_tag="STM0366" /note="hypothetical protein; Provisional; Region: PRK09929" /db_xref="CDD:182151" gene complement(416088..417730) /gene="prpR" /locus_tag="STM0367" /db_xref="GeneID:1251886" CDS complement(416088..417713) /gene="prpR" /locus_tag="STM0367" /note="propionate catabolism operon regulatory protein. (SW:PRPR_SALTY)" /codon_start=1 /transl_table=11 /product="regulator for prp operon (EBP family)" /protein_id="NP_459362.1" /db_xref="GeneID:1251886" /translation="MTTAHSAPRDNSDKPVIWTVSVTRLFELFRDISLEFDHLATITP IQLGFEKAVTYIRKKLATERCDAIIAAGSNGAYLKSRLSIPVILIKPSGFDVLQALAK AGKLTSSIGIVTYQETIPALLAFQKTFHLRLEQRSYVTEEDARGQINELKANGIEAVV GAGLITDLAEEAGMTAIFIYSAATVRQAFHDALDMTRLTRRQRVDYPSGKGLQTRYEL GDIRGQSPQMEQLRQTITLYARSRAAVLIQGETGTGKELAAQAIHQTFFHRQPHRQNK PSPPFVAVNCGAITESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIGEM PLPLQTRLLRVLEEKAVTRVGGHQPIPVDVRVISATHCDLDREIMQGRFRPDLFYRLS ILRLTLPPLRERQADILPLAESFLKQSLAAMEIPFTESIRHGLTQCQPLLLAWRWPGN IRELRNMMERLALFLSVDPAPTLDRQFMRQLLPELMVNTAELTPSTVDANALQDVLAR FKGDKTAAARYLGISRTTLWRRLKAGAKDQSDN" misc_feature complement(416100..417713) /gene="prpR" /locus_tag="STM0367" /note="propionate catabolism operon regulatory protein PrpR; Provisional; Region: PRK15424" /db_xref="CDD:237963" regulatory complement(417725..417730) /regulatory_class="ribosome_binding_site" /gene="prpR" /locus_tag="STM0367" /note="putative RBS for prpR; RegulonDB:STMS1H000722" gene 417967..418865 /gene="prpB" /locus_tag="STM0368" /db_xref="GeneID:1251887" regulatory 417967..417972 /regulatory_class="ribosome_binding_site" /gene="prpB" /locus_tag="STM0368" /note="putative RBS for prpB; RegulonDB:STMS1H000723" CDS 417978..418865 /gene="prpB" /locus_tag="STM0368" /EC_number="2.7.8.23" /note="putative carboxyvinyl-carboxyphosphonate phosphorylmutase. (SW:CPPM_SALTY)" /codon_start=1 /transl_table=11 /product="putative carboxyphosphonoenolpyruvate mutase" /protein_id="NP_459363.1" /db_xref="GeneID:1251887" /translation="MSLHSPGQAFRAALAKENPLQIVGAINANHALLAQRAGYQAIYL SGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCPLPLLVDADIGFGSSAFNVARTVK SIAKAGAAALHIEDQVGAKRCGHRPNKAIVSKEEMVDRIRAAVDARTDPNFVIMARTD ALAVEGLEAALDRAQAYVDAGADMLFPEAITELSMYRRFADVAQVPILANITEFGATP LFTTDELRSAHVAMALYPLSAFRAMNRAAEKVYTVLRQEGTQKNVIDIMQTRNELYES INYYQFEEKLDALYRNKKS" misc_feature 417981..418859 /gene="prpB" /locus_tag="STM0368" /note="2-methylisocitrate lyase; Provisional; Region: prpB; PRK11320" /db_xref="CDD:183086" gene 418979..420157 /gene="prpC" /locus_tag="STM0369" /db_xref="GeneID:1251888" regulatory 418979..418984 /regulatory_class="ribosome_binding_site" /gene="prpC" /locus_tag="STM0369" /note="putative RBS for prpC; RegulonDB:STMS1H000724" CDS 418988..420157 /gene="prpC" /locus_tag="STM0369" /EC_number="2.3.3.5" /note="methylcitrate synthase. (SW:CISZ_SALTY)" /codon_start=1 /transl_table=11 /product="putative citrate synthase" /protein_id="NP_459364.1" /db_xref="GeneID:1251888" /translation="MTDTTILQNNTHVIKPKKSVALSGVPAGNTALCTVGKSGNDLHY RGYDILDLAEHCEFEEVAHLLIHGKLPTRDELNAYKSKLKALRGLPANVRTVLEALPA ASHPMDVMRTGVSALGCTLPEKEGHTVSGARDIADKLLASLSSILLYWYHYSHNGERI QPETDDDSIGGHFLHLLHGEKPTQSWEKAMHISLVLYAEHEFNASTFTSRVIAGTGSD VYSAIIGAIGALRGPKHGGANEVSLEIQQRYETPDEAEADIRKRVENKEVVIGFGHPV YTIADPRHQVIKRVAKQLSEEGGSLKMYHIADRLETVMWETKKMFPNLDWFSAVSYNM MGVPTEMFTPLFVIARVTGWAAHIIEQRQDNKIIRPSANYTGPEDRPFVSIDDRC" misc_feature 419030..420151 /gene="prpC" /locus_tag="STM0369" /note="methylcitrate synthase; Provisional; Region: PRK12351" /db_xref="CDD:183463" misc_feature order(419045..419053,419060..419074,419258..419263, 419270..419275,419297..419299,419309..419311, 419321..419323,419330..419332,419474..419476, 419585..419599,419606..419611,419621..419623, 419630..419641,419648..419650,419669..419674, 419678..419689,419810..419812,420083..420115) /gene="prpC" /locus_tag="STM0369" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99870" misc_feature order(419054..419056,419585..419587,419594..419596, 419687..419695,419699..419701,419708..419710, 419789..419812,419819..419821,419834..419836, 419939..419941,419945..419947,419954..419956, 419960..419962,420023..420025,420035..420037, 420083..420085,420092..420094) /gene="prpC" /locus_tag="STM0369" /note="active site" /db_xref="CDD:99870" misc_feature order(419054..419056,419585..419587,419594..419596, 419687..419692,419789..419794,419798..419812, 419834..419836,419954..419956,420035..420037) /gene="prpC" /locus_tag="STM0369" /note="citrylCoA binding site [chemical binding]; other site" /db_xref="CDD:99870" misc_feature order(419585..419587,419594..419596,419690..419695, 419807..419809,419834..419836,419960..419962, 420023..420025,420035..420037,420092..420094) /gene="prpC" /locus_tag="STM0369" /note="oxalacetate/citrate binding site [chemical binding]; other site" /db_xref="CDD:99870" misc_feature order(419687..419692,419699..419701,419708..419710, 419789..419806,419810..419812,419819..419821, 419939..419941,419945..419947,419954..419956, 419960..419962,420083..420085) /gene="prpC" /locus_tag="STM0369" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:99870" misc_feature order(419690..419692,419807..419809,419960..419962) /gene="prpC" /locus_tag="STM0369" /note="catalytic triad [active]" /db_xref="CDD:99870" gene 420182..421648 /gene="prpD" /locus_tag="STM0370" /db_xref="GeneID:1251889" regulatory 420182..420187 /regulatory_class="ribosome_binding_site" /gene="prpD" /locus_tag="STM0370" /note="putative RBS for prpD; RegulonDB:STMS1H000725" CDS 420197..421648 /gene="prpD" /locus_tag="STM0370" /note="PRPD protein. (SW:PRPD_SALTY)" /codon_start=1 /transl_table=11 /product="putative protein in propionate catabolism" /protein_id="NP_459365.1" /db_xref="GeneID:1251889" /translation="MSTQELNIRPDFDREIVDIVDYVMNYEITSKVAYDTAHYCLLDT LGCGLEALEYPACKKLLGPIVPGTVVPNGARVPGTQFQLDPVQAAFNIGAMIRWLDFN DTWLAAEWGHPSDNLGGILATADWLSRNAVAAGKAPLTMKQVLSGMIKAHEIQGCIAL ENAFNRVGLDHVLLVKVASTAVVAEMLGLTRDEILNAVSLAWVDGQSLRTYRHAPNTG TRKSWAAGDATSRAVRLALMAKTGEMGYPSALTAKTWGFYDVSFKGETFRFQRPYGSY VMENVLFKISFPAEFHSQTAVEAAMTLYEQMQAAGKTAADIEKVTIRTHEACLRIIDK KGPLNNPADRDHCIQYMVAVPLLFGRLTAADYEDEVAQDKRIDALREKIVCYEDPAFT ADYHDPEKRAIGNAITVEFTDGSRFGEVVVEYPIGHARRRADGIPKLIEKFKINLARQ FPTRQQQRILDVSLDRARLEQMPVNEYLDLYVI" misc_feature 420197..421645 /gene="prpD" /locus_tag="STM0370" /note="bifunctional 2-methylcitrate dehydratase/aconitate hydratase; Region: prpD; PRK09425" /db_xref="CDD:181845" gene 421677..423575 /gene="prpE" /locus_tag="STM0371" /db_xref="GeneID:1251890" regulatory 421677..421682 /regulatory_class="ribosome_binding_site" /gene="prpE" /locus_tag="STM0371" /note="putative RBS for prpE; RegulonDB:STMS1H000726" CDS 421689..423575 /gene="prpE" /locus_tag="STM0371" /note="PRPE protein. (SW:PRPE_SALTY)" /codon_start=1 /transl_table=11 /product="putative acetyl-CoA synthetase, propionate catabolism operon" /protein_id="NP_459366.1" /db_xref="GeneID:1251890" /translation="MSFSEFYQRSINEPEAFWAEQARRIDWRQPFTQTLDHSRPPFAR WFCGGTTNLCHNAVDRWRDKQPEALALIAVSSETDEERTFTFSQLHDEVNIVAAMLLS LGVQRGDRVLVYMPMIAEAQITLLACARIGAIHSVVFGGFASHSVAARIDDARPALIV SADAGARGGKILPYKKLLDDAIAQAQHQPKHVLLVDRGLAKMAWVDGRDLDFATLRQQ HLGASVPVAWLESNETSCILYTSGTTGKPKGVQRDVGGYAVALATSMDTIFGGKAGGV FFCASDIGWVVGHSYIVYAPLLAGMATIVYEGLPTYPDCGVWWKIVEKYQVNRMFSAP TAIRVLKKFPTAQIRNHDLSSLEALYLAGEPLDEPTASWVTETLGVPVIDNYWQTESG WPIMALARALDDRPSRLGSPGVPMYGYNVQLLNEVTGEPCGINEKGMLVIEGPLPPGC IQTIWGDDARFVKTYWSLFNRQVYATFDWGIRDAEGYYFILGRTDDVINIAGHRLGTR EIEESISSYPNVAEVAVVGIKDALKGQVAVAFVIPKQSDTLADREAARDEENAIMALV DNQIGHFGRPAHVWFVSQLPKTRSGKMLRRTIQAICEGRDPGDLTTIDDPASLQQIRQ AIEE" misc_feature 421689..423572 /gene="prpE" /locus_tag="STM0371" /note="propionyl-CoA synthetase; Provisional; Region: prpE; PRK10524" /db_xref="CDD:182517" gene complement(423679..424663) /gene="hemB" /locus_tag="STM0372" /db_xref="GeneID:1251891" CDS complement(423679..424653) /gene="hemB" /locus_tag="STM0372" /EC_number="4.2.1.24" /note="similar to E. coli 5-aminolevulinate dehydratase = porphobilinogen synthase (AAC73472.1); Blastp hit to AAC73472.1 (335 aa), 93% identity in aa 12 - 335" /codon_start=1 /transl_table=11 /product="5-aminolevulinate dehydratase (porphobilinogen synthase)" /protein_id="NP_459367.1" /db_xref="GeneID:1251891" /translation="MTDLIHRPRRLRKSAALRAMFEETTLSLNDLVLPIFVEEELDDY KAIDAMPGVMRIPEKQLAREIERIANAGIRSVMTFGISHHTDDTGSDTWKEDGLVARM SRICKQTVPEMIVMSDTCFCEYTSHGHCGVLCEHGVDNDATLANLGKQAVIAAAAGAD FIAPSAAMDGQVQAIRQALDAAGFTDTAIMSYSTKFASSFYGPFREAAGTALKGDRKT YQMNPMNRREAIRESLLDEAQGADCLMVKPAGAYLDVLREIRERTELPLGAYQVSGEY AMIKFAAMAGAIDEEKVVLESLGSIKRAGADLIFSYFALDLAEKNILR" misc_feature complement(423697..424644) /gene="hemB" /locus_tag="STM0372" /note="Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the...; Region: ALAD_PBGS; cl00338" /db_xref="CDD:469728" misc_feature complement(order(423745..423747,423754..423756, 423766..423768,423820..423822,423892..423906, 423958..423963,423970..423972,423988..423990, 423997..423999,424054..424062,424147..424152, 424231..424236,424501..424503,424510..424512, 424582..424584,424615..424620,424627..424629)) /gene="hemB" /locus_tag="STM0372" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238226" misc_feature complement(order(423718..423720,423835..423837, 423844..423846,423913..423915,423994..423996, 424006..424008,424024..424026,424039..424044, 424051..424053,424069..424071,424159..424161, 424264..424266,424288..424290,424294..424296, 424300..424302)) /gene="hemB" /locus_tag="STM0372" /note="active site" /db_xref="CDD:238226" misc_feature complement(order(423913..423915,424069..424071)) /gene="hemB" /locus_tag="STM0372" /note="Schiff base residues [active]" /db_xref="CDD:238226" regulatory complement(424658..424663) /regulatory_class="ribosome_binding_site" /gene="hemB" /locus_tag="STM0372" /note="putative RBS for hemB; RegulonDB:STMS1H000727" gene 425151..428102 /gene="yaiU" /locus_tag="STM0373" /db_xref="GeneID:1251892" regulatory 425151..425156 /regulatory_class="ribosome_binding_site" /gene="yaiU" /locus_tag="STM0373" /note="putative RBS for yaiU; RegulonDB:STMS1H000728" CDS 425166..428102 /gene="yaiU" /locus_tag="STM0373" /note="similar to 3rd module of ATP-binding components of transporters; similar to E. coli putative flagellin structural protein (AAC73477.1); Blastp hit to AAC73477.1 (467 aa), 91% identity in aa 1 - 467" /codon_start=1 /transl_table=11 /product="flagellar protein" /protein_id="NP_459368.1" /db_xref="GeneID:1251892" /translation="MHSWKKKLVVSQLALACTLAITSQANATTYDTWTYYDNPTTALD WNNMDAAGTVDGNYVNYSGFVYYNNANGDFDQTFNGDTVNGTISTYYLNHDYNDATSN ELNISNSVIHGSITSMLPIGYYDRFDTLDHDGYSEYYRFNNGTDTVDGNWYDGDVFTL NIANSTIDDDYEAFYFTDSYKDGDVTKYTNETFDVSEGVAVNLDVESNINISNNSRVA GIALSQGNTYNNTYTTESHNWDNNINVFDSTVTSGSDYILDSAYTTDTGTFGTGHFGN SDEPSDYTGAGDVALSFTDDNGASDYAMKNNVYFSNSTLMGDVKFTSNWNANFDADGD DTNGDGVPDTNHGWADDGLNVDELNLTLDNGSKWVGQATYTVDTTSRMYDVETNSLTP GATLEDNAWNRIVGNEVFQSGVFNVTLNNGSEWDTVGDSTVDTLAVNNGSQVNVSNSD LTSDTIDLTNGSSLNIGEGGYVDTDHLTIDSYSTVGLTESTGWSTYSNLYANTITVTN GGVLDVNVGQFDTEVFSTDKLELTSGNTADHNGNVVSGVFNIHSSDYVLNADLVNDRT WDTTQANYGYGTIAMNSDGHLTINGNGDINNGDELDNSSVDNVVAATGNYKVRIDNAT GAGSVADYKGNELIYVNDVNTDATFSAANKADLGAYTYQAKQEGNTVVLEQMELTDYA NMALSIPSANTNIWNLEQDTVGTRLTNARHGLADNGGAWVSYFGGNFNGDNGTINYDQ DVNGIMVGVDTKVDGNNAKWIVGAAAGFAKGDLSDRTGQVDQDSQSAYIYSSARFANN IFVDGNLSYSHFNNDLSANMSDGTYVDGNTSSDAWGFGLKLGYDLKLGDAGYVTPYGS VSGLFQSGDDYQLSNDMKVDGQSYDSMRYELGVDAGYTFTYSEDQALTPYFKLAYVYD DSNNDADVNGDSIDNGVEGSAVRVGLGTQFSFTKNFSAYTDANYLGGGDVDQDWSANV GVKYTW" misc_feature 425589..428099 /gene="yaiU" /locus_tag="STM0373" /note="Uncharacterized conserved protein, contains a C-terminal beta-barrel porin domain [Function unknown]; Region: COG4625" /db_xref="CDD:443664" misc_feature 426882..428099 /gene="yaiU" /locus_tag="STM0373" /note="outer membrane autotransporter barrel domain; Region: autotrans_barl; TIGR01414" /db_xref="CDD:273608" gene 428177..428811 /gene="yaiV" /locus_tag="STM0374" /db_xref="GeneID:1251893" regulatory 428177..428182 /regulatory_class="ribosome_binding_site" /gene="yaiV" /locus_tag="STM0374" /note="putative RBS for yaiV; RegulonDB:STMS1H000729" CDS 428188..428811 /gene="yaiV" /locus_tag="STM0374" /note="similar to E. coli orf, hypothetical protein (AAC73478.1); Blastp hit to AAC73478.1 (222 aa), 71% identity in aa 16 - 222" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459369.1" /db_xref="GeneID:1251893" /translation="MLSLSKPLQEFYRLDKCLSKHGTRFEFVNDKEIICSPDESNTHT FVILEGVVSLVRGDKVLIGIVQAPFIFGLADGVAKKEAQYKLIAESGCIGYRLSSSQT LAIIEQNQLWREAFCWIVWKSQVLELRDKQLIGNNSYDQIRATLMTMIEWDEELRSRI GVMNYIHQRTRVSRSVVAEVLAALRKGNYIEMNKGKLISINRLPSEY" misc_feature 428188..428808 /gene="yaiV" /locus_tag="STM0374" /note="hydrogen peroxide resistance inhibitor IprA; Region: PRK11832" /db_xref="CDD:183332" gene complement(428856..429986) /gene="ampH" /locus_tag="STM0375" /db_xref="GeneID:1251894" CDS complement(428856..429986) /gene="ampH" /locus_tag="STM0375" /note="similar to E. coli putative enzyme (AAC73479.1); Blastp hit to AAC73479.1 (385 aa), 91% identity in aa 10 - 385" /codon_start=1 /transl_table=11 /product="penicillin- binding protein" /protein_id="NP_459370.3" /db_xref="GeneID:1251894" /translation="MLFAASLTSVQAAQPIADPVFASDIVDRYAEHIFYGSGATGMAL VVIDGNQRVFRSFGDTRPGNNVRPQLDSVIRIASLTKLMTSEMLVKLLDQGTVKLNDP LSKYAPPGARVPTYQGTPITLVNLATHTSALPREQPGGAAHRPVFVWPTREQRWNWLS TATLKVAPGSQAAYSNLAFDLLADALATASGKPYTQLFEEKITRPLGMKDTTFTPSPD QCKRLMVAEKGASPCNNTLAAIGSGGVYSTPGDMMRWMQQYLSSDFYHRSQQADRMQT LIYQRIQLKKIIGMDVPGKADALGLGWVYMAPKDGRPGIIQKTGGGGGFITYMAMIPQ YNIGAFVVVTRSPLTRFTNMSDGINDLVTELSGNKPIAIPAS" misc_feature complement(428880..429986) /gene="ampH" /locus_tag="STM0375" /note="beta-lactam binding protein AmpH; Provisional; Region: PRK10662" /db_xref="CDD:236732" gene 430348..431580 /gene="sbmA" /locus_tag="STM0376" /db_xref="GeneID:1251895" regulatory 430348..430353 /regulatory_class="ribosome_binding_site" /gene="sbmA" /locus_tag="STM0376" /note="putative RBS for sbmA; RegulonDB:STMS1H000730" CDS 430360..431580 /gene="sbmA" /locus_tag="STM0376" /note="similar to E. coli sensitivity to microcin B17, possibly envelop protein (AAC73480.1); Blastp hit to AAC73480.1 (406 aa), 92% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="putative ABC superfamily transporter" /protein_id="NP_459371.1" /db_xref="GeneID:1251895" /translation="MFKSFFPKPGPFFMSAFVWALIAVIFWQAGGGDWVARLVGASDE VPISAARFWSLDYLIFYAYYLICVGLFATFWFIYSPHRWQYWSILGTSLIIFVTWFLV EVGVAVNAWYAPFYDLIQTALSSPHKVTLGQFYHEVGVFLGIALIAVVIGVLNNFFVS HYVFRWRTAMNEHYMAHWQYLRHIEGAAQRVQEDTMRFASTLENMGVSFINAIMTLIA FLPVLVTLSAHVPNLPIVGHIPYGLVIAAIVWSLMGTGLLAVVGIKLPGLEFKNQRVE AAYRKELVYGEDDASRATPPTVRELFSAVRHNYFRLYFHYMYFNIARILYLQVDNVFG LFLLFPSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTLVELMSIYKRLRSFERQ LDGQPVQEVTHSFS" misc_feature 430360..431577 /gene="sbmA" /locus_tag="STM0376" /note="peptide antibiotic transporter SbmA; Region: PRK11098" /db_xref="CDD:182960" gene 431584..432689 /gene="yaiW" /locus_tag="STM0377" /db_xref="GeneID:1251896" regulatory 431584..431589 /regulatory_class="ribosome_binding_site" /gene="yaiW" /locus_tag="STM0377" /note="putative RBS for yaiW; RegulonDB:STMS1H000731" CDS 431595..432689 /gene="yaiW" /locus_tag="STM0377" /note="similar to E. coli orf, hypothetical protein (AAC73481.1); Blastp hit to AAC73481.1 (364 aa), 85% identity in aa 1 - 362" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_459372.1" /db_xref="GeneID:1251896" /translation="MSAASRLYPLPFLAVAILAGCSSQSGQPVSKGEKPVDVASVVRQ KMPASVKDREAWAKDIATTFKSQGLAPTVENICSVLAVAQQESGYQADPVVPGLSKIA WQEIDRRAERLHIPLFLVHTALKINSPNGKSYSERLDTVKTEKQLSAIFDDFINMVPM GQTLFGSYNPVHTGGPMQVSIAFAEQHAKGYPWKMTGTVRQEVFTRRGGLWFGTYHLL NYPANYSAPVFRFADFNAGWYASRNAAFQNAVSKASGVKLALDGDLIRYNSKEPGKTE LAVRKLAGQLGMSEREIRSQLEKGDSLAFEKTALYKKVYKLAEAKTGKTLAREMLPGI QLESPKITRKLTTAWFAKRVDERRARCMGR" misc_feature 431739..432686 /gene="yaiW" /locus_tag="STM0377" /note="Protein of unknown function (DUF1615); Region: DUF1615; pfam07759" /db_xref="CDD:429641" gene complement(432727..433047) /gene="yaiY" /locus_tag="STM0378" /db_xref="GeneID:1251897" CDS complement(432727..433035) /gene="yaiY" /locus_tag="STM0378" /note="similar to E. coli orf, hypothetical protein (AAC73482.1); Blastp hit to AAC73482.1 (102 aa), 86% identity in aa 1 - 102" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459373.1" /db_xref="GeneID:1251897" /translation="MADFTLSKSLFSGKHRETSSTPGNIAYAIFVLFCFWAGAQLLNL LVHAPGIYEHLMQVQDTGRPRVEIGLGVGTIFGLVPFLTGCLIFAVIAAFLRWRHRHQ " misc_feature complement(432733..433035) /gene="yaiY" /locus_tag="STM0378" /note="Protein of unknown function (DUF2755); Region: DUF2755; pfam10954" /db_xref="CDD:402505" regulatory complement(433042..433047) /regulatory_class="ribosome_binding_site" /gene="yaiY" /locus_tag="STM0378" /note="putative RBS for yaiY; RegulonDB:STMS1H000732" gene 433292..433518 /gene="yaiZ" /locus_tag="STM0379" /db_xref="GeneID:1251898" regulatory 433292..433297 /regulatory_class="ribosome_binding_site" /gene="yaiZ" /locus_tag="STM0379" /note="putative RBS for yaiZ; RegulonDB:STMS1H000733" CDS 433303..433518 /gene="yaiZ" /locus_tag="STM0379" /note="similar to E. coli orf, hypothetical protein (AAC73483.1); Blastp hit to AAC73483.1 (114 aa), 84% identity in aa 45 - 114" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459374.1" /db_xref="GeneID:1251898" /translation="MRLPVKIRRDWHYYAFSIGLIFILNGVVGLLGFEAKGWQTYGVG LVTWIISFWLAGFIIRRREEDEVKDAR" misc_feature 433303..433497 /gene="yaiZ" /locus_tag="STM0379" /note="Protein of unknown function (DUF2754); Region: DUF2754; pfam10953" /db_xref="CDD:402504" gene complement(433544..434656) /gene="ddlA" /locus_tag="STM0380" /db_xref="GeneID:1251899" CDS complement(433544..434638) /gene="ddlA" /locus_tag="STM0380" /EC_number="6.3.2.4" /note="D-alanine--D-alanine ligase A. (SW:DDLA_SALTY)" /codon_start=1 /transl_table=11 /product="D-alanine-D-alanine ligase A" /protein_id="NP_459375.1" /db_xref="GeneID:1251899" /translation="MAKLRVGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGID KAGQWHVNDAENYLQNADDPAHIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVI FPIVHGTLGEDGSLQGMLRVANLPFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFIT LTRTNRHAFSFAEVESRLGLPLFVKPANQGSSVGVSKVANEAQYQQAVALAFEFDHKV VVEQGIKGREIECAVLGNDNPQASTCGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPS EVNDKIRAIAIQAYQTLGCAGMARVDVFLTADNEVVINEINTLPGFTNISMYPKLWQA SGLGYTDLISRLIELALERHTANNALKTTM" misc_feature complement(433583..434638) /gene="ddlA" /locus_tag="STM0380" /note="D-alanine--D-alanine ligase; Region: ddl; PRK01966" /db_xref="CDD:234993" regulatory complement(434651..434656) /regulatory_class="ribosome_binding_site" /gene="ddlA" /locus_tag="STM0380" /note="putative RBS for ddlA; RegulonDB:STMS1H000734" gene 434712..435429 /locus_tag="STM0381" /db_xref="GeneID:1251900" regulatory 434712..434717 /regulatory_class="ribosome_binding_site" /locus_tag="STM0381" /note="putative RBS for STM0381; RegulonDB:STMS1H000735" CDS 434716..435429 /locus_tag="STM0381" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459376.1" /db_xref="GeneID:1251900" /translation="MFMGCENGGRVRGKGFLIIVLLGGIGGLGYRYLPSYYNPFAPLQ LADPPGWITTFKLQRLTPSQCRELLTAANQQGLISSQPVADSAGECPLSHVVRVRDFG QVKLSSSFLASCPLALRSALFVEQQAKPLTETWMKRRLTRIEHLGSYACRNIYHRPDA RRSEHASAEALDVSGFQLSDGRKITVLRGWGRQETGPWLRAMLNASCHYYGNGLGPDY NAAHANHFHLGMRGYGVCR" misc_feature 434815..435426 /locus_tag="STM0381" /note="Uncharacterized conserved protein, contains Extensin-like_C domain [Function unknown]; Region: COG3921" /db_xref="CDD:443126" gene 435598..436809 /locus_tag="STM0382" /db_xref="GeneID:1251901" CDS 435598..436809 /locus_tag="STM0382" /note="similar to E. coli putative transport protein (AAC74137.1); Blastp hit to AAC74137.1 (408 aa), 60% identity in aa 11 - 405" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_459377.1" /db_xref="GeneID:1251901" /translation="MESWKVNLISVWFGCFFTGLAISQILPFLPLYISQLGVSSHEAL SMWSGLTFSITFLISAIVSPMWGSLADRKGRKLMLLRASLGMAIAILLQAFATHVWQL FLLRGIMGLTSGYIPNAMALVASQVPRERSGWALSTLSTAQISGVIGGPLMGGFVADH IGLRAVFLITAMLLVVSFLVTLFLIKEGVRPVIKKSERLSGKAVFASLPYPALVISLF FTTMVIQLCNGSISPILALFIKSMMPDSNNIAFLSGLIASVPGISALISAPRLGKLGD RIGTERILMATLICAVLLFFAMSWVTTPFQLGLLRFLLGFADGAMLPAVQTLLVKYSS DQITGRIFGYNQSFMYLGNVVGPLMGATVSAMAGFRWVFIATAAIVLINIGQLTLALR RRRNAQKAKGQ" misc_feature 435628..436749 /locus_tag="STM0382" /note="Multidrug resistance protein MdtG and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily; Region: MFS_MdtG_MDR_like; cd17391" /db_xref="CDD:340949" misc_feature order(435649..435654,435661..435666,435673..435675, 435784..435786,435934..435939,435943..435951, 435958..435960,436015..436017,436024..436029, 436036..436038,436258..436260,436267..436272, 436279..436287,436294..436296,436387..436389, 436399..436401,436546..436551,436561..436563, 436573..436575,436621..436623,436630..436635, 436642..436647,436654..436656) /locus_tag="STM0382" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340949" gene 437092..437366 /gene="yaiB" /locus_tag="STM0383" /db_xref="GeneID:1251902" regulatory 437092..437097 /regulatory_class="ribosome_binding_site" /gene="yaiB" /locus_tag="STM0383" /note="putative RBS for yaiB; RegulonDB:STMS1H000736" CDS 437100..437366 /gene="yaiB" /locus_tag="STM0383" /note="similar to E. coli orf, hypothetical protein (AAC73485.1); Blastp hit to AAC73485.1 (86 aa), 85% identity in aa 1 - 85" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459378.3" /db_xref="GeneID:1251902" /translation="MVMKNLIAELLLKLAQKEEESKELVAQVEALEIIVTAMLRNMAQ NEQEMLIRQVEGALEGVKPDASVPDHDTELLRQYVKKLLRHPRH" misc_feature 437106..437363 /gene="yaiB" /locus_tag="STM0383" /note="anti-adapter protein IraP; Region: PRK10244" /db_xref="CDD:236666" gene 437706..438038 /gene="psiF" /locus_tag="STM0384" /db_xref="GeneID:1251903" regulatory 437706..437711 /regulatory_class="ribosome_binding_site" /gene="psiF" /locus_tag="STM0384" /note="putative RBS for psiF; RegulonDB:STMS1H000737" CDS 437718..438038 /gene="psiF" /locus_tag="STM0384" /note="similar to E. coli induced by phosphate starvation (AAC73487.1); Blastp hit to AAC73487.1 (112 aa), 90% identity in aa 7 - 112" /codon_start=1 /transl_table=11 /product="induced by phosphate starvation" /protein_id="NP_459379.1" /db_xref="GeneID:1251903" /translation="MKITLLVTLLFGLVFLTAVGATEKPLTPQQQRMTTCNQQATAQA LKGDARKTYLSDCLKNSQSAPGEKSLTPQQQKMRECNVQATEQSLKGDDRSKFMSACL KKAA" misc_feature 437718..438035 /gene="psiF" /locus_tag="STM0384" /note="phosphate starvation-inducible protein PsiF; Region: PRK11505" /db_xref="CDD:183165" gene 438111..439242 /gene="yaiC" /locus_tag="STM0385" /db_xref="GeneID:1251904" regulatory 438111..438116 /regulatory_class="ribosome_binding_site" /gene="yaiC" /locus_tag="STM0385" /note="putative RBS for yaiC; RegulonDB:STMS1H000738" CDS 438130..439242 /gene="yaiC" /locus_tag="STM0385" /note="similar to E. coli orf, hypothetical protein (AAC73488.1); Blastp hit to AAC73488.1 (371 aa), 75% identity in aa 1 - 371" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase domain 1" /protein_id="NP_459380.1" /db_xref="GeneID:1251904" /translation="MFPKIMNDENFYRKAVEQAVAPPDPPDDRQRSGLRFARRIRLPR AVGLGGMFLPVAAVLVTQPVFGGWWLLLVGWSFVWPHLAWQWAAKALDPLRQEIYNLK VDAILSGMWIALMGVNMLPAAALFMMMSMNLMGAGGRRLFTVGMGLLLASCLVTLQLA GLPVAMRSSSLEVTLSLPVIMLYPLLFAWVSYQTAIKLAEHKRRLQAMSSRDGMTGVY NRRHWEILLRNEFDHSRRHHREATLLIIDIDHFKSINDTWGHDVGDEAIIALTRQLQI TLRGSDIIGRFGGDEFAVIMCGTPADSAITAMSRVHERLNTLRLPGAPQVMLRISVGV APLTPQIGHYREWLKSADMALYKAKNAGRNRTEVAA" misc_feature 438145..439239 /gene="yaiC" /locus_tag="STM0385" /note="diguanylate cyclase AdrA; Provisional; Region: adrA; PRK10245" /db_xref="CDD:182329" gene complement(439257..440080) /gene="proC" /locus_tag="STM0386" /db_xref="GeneID:1251905" CDS complement(439257..440066) /gene="proC" /locus_tag="STM0386" /EC_number="1.5.1.2" /note="similar to E. coli pyrroline-5-carboxylate reductase (AAC73489.1); Blastp hit to AAC73489.1 (269 aa), 95% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="pyrroline-5-carboxylate reductase" /protein_id="NP_459381.1" /db_xref="GeneID:1251905" /translation="MEKKIGFIGCGNMGKAILGGLIASGQVLPGQIWVYTPSPDKVAA LHDQYGINAAQSAQEVAQVADIVFGAVKPGIMVKVLSEISSSLNKDSLVVSIAAGVTL DQLARALGHDRKIIRAMPNTPSLVNAGMTSVTPNALVTPEDTADVLNIFRCFGGAEVI AEPMIHPVVGVSGSSPAYVFMFIEAMADAAVLGGMPRAQAYKFAAQAVMGSAKMVLET GKHPGELKDMVCSPGGTTIEAVRVLEERGFRAAVIEAMTKCMEKSEALSKS" misc_feature complement(439263..440066) /gene="proC" /locus_tag="STM0386" /note="Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]; Region: ProC; COG0345" /db_xref="CDD:440114" regulatory complement(440075..440080) /regulatory_class="ribosome_binding_site" /gene="proC" /locus_tag="STM0386" /note="putative RBS for proC; RegulonDB:STMS1H000739" gene 440194..440661 /gene="yaiI" /locus_tag="STM0387" /db_xref="GeneID:1251906" regulatory 440194..440199 /regulatory_class="ribosome_binding_site" /gene="yaiI" /locus_tag="STM0387" /note="putative RBS for yaiI; RegulonDB:STMS1H000740" CDS 440206..440661 /gene="yaiI" /locus_tag="STM0387" /note="similar to E. coli orf, hypothetical protein (AAC73490.1); Blastp hit to AAC73490.1 (192 aa), 89% identity in aa 41 - 191" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459382.1" /db_xref="GeneID:1251906" /translation="MTIWVDADACPNVIKEILYRAAERMQLPLILVANQALRVPPSRF IRTLRVAAGFDVADNEIVRQCEAGDLVITADIPLAAEVLEKGAAALNPRGERYSDATI RERLTMRDFMDTLRASGVQTGGPNTLSPRDRQHFAAELDKWWLESQRKK" misc_feature 440206..440658 /gene="yaiI" /locus_tag="STM0387" /note="Uncharacterized conserved protein YaiI, UPF0178 family [Function unknown]; Region: YaiI; COG1671" /db_xref="CDD:441277" protein_bind 440591..440622 /gene="yaiI" /locus_tag="STM0387" /note="putative binding site for TyrR, RegulonDB: STMS1H000380" /bound_moiety="TyrR" protein_bind 440665..440687 /note="putative binding site for TyrR, RegulonDB: STMS1H000382" /bound_moiety="TyrR" gene 440687..441391 /gene="aroL" /locus_tag="STM0388" /db_xref="GeneID:1251907" regulatory 440687..440695 /regulatory_class="minus_35_signal" /gene="aroL" /locus_tag="STM0388" /note="putative -35_signal for aroL; RegulonDB:STMLTH004624" regulatory 440714..440722 /regulatory_class="minus_10_signal" /gene="aroL" /locus_tag="STM0388" /note="putative -10_signal for aroL; RegulonDB:STMLTH004624" protein_bind 440739..440761 /gene="aroL" /locus_tag="STM0388" /note="putative binding site for TyrR, RegulonDB: STMS1H000381" /bound_moiety="TyrR" protein_bind 440765..440793 /gene="aroL" /locus_tag="STM0388" /note="putative binding site for TrpR, RegulonDB: STMS1H000377" /bound_moiety="TrpR" regulatory 440829..440834 /regulatory_class="ribosome_binding_site" /gene="aroL" /locus_tag="STM0388" /note="putative RBS for aroL; RegulonDB:STMS1H000741" CDS 440846..441391 /gene="aroL" /locus_tag="STM0388" /EC_number="2.7.1.71" /note="similar to E. coli shikimate kinase II (AAC73491.1); Blastp hit to AAC73491.1 (174 aa), 74% identity in aa 1 - 168" /codon_start=1 /transl_table=11 /product="shikimate kinase II" /protein_id="NP_459383.1" /db_xref="GeneID:1251907" /translation="MMQPLYLVGPRGCGKTTIGMALAQATGFRFADTDRWLQSHVQMS VADIVEKEGWGGFRARETAALEAVSAPSTVVATGGGIILTEYNRRYMHRVGVVIYLCA PVSTLVNRLEAEPEADLRPTLTGKPLSEEVREVLEQRDALYRETAHYIIDATKAPAQV VSEIIAALPPSTQRLQGDVYT" misc_feature 440846..441358 /gene="aroL" /locus_tag="STM0388" /note="shikimate kinase AroL; Region: aroL; PRK03731" /db_xref="CDD:235153" misc_feature order(440879..440896,441173..441175,441203..441205) /gene="aroL" /locus_tag="STM0388" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:238260" misc_feature order(440891..440893,440939..440941,440945..440947) /gene="aroL" /locus_tag="STM0388" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:238260" misc_feature order(440945..440947,441017..441019,441026..441028, 441077..441085,441260..441262) /gene="aroL" /locus_tag="STM0388" /note="putative shikimate binding site [active]" /db_xref="CDD:238260" gene 441407..441609 /gene="yaiA" /locus_tag="STM0389" /db_xref="GeneID:1251908" regulatory 441407..441412 /regulatory_class="ribosome_binding_site" /gene="yaiA" /locus_tag="STM0389" /note="putative RBS for yaiA; RegulonDB:STMS1H000742" CDS 441418..441609 /gene="yaiA" /locus_tag="STM0389" /note="similar to E. coli orf, hypothetical protein (AAC73492.1); Blastp hit to AAC73492.1 (63 aa), 93% identity in aa 1 - 62" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459384.1" /db_xref="GeneID:1251908" /translation="MPTRPPYPREAYIVTIEKGTPGQTVTWYQLRADHPKPDSLISEH PTAEEAMDAKNRYEDPDKS" misc_feature 441418..441606 /gene="yaiA" /locus_tag="STM0389" /note="hypothetical protein; Provisional; Region: PRK10380" /db_xref="CDD:182421" gene 441846..442537 /gene="aroM" /locus_tag="STM0390" /db_xref="GeneID:1251909" regulatory 441846..441851 /regulatory_class="ribosome_binding_site" /gene="aroM" /locus_tag="STM0390" /note="putative RBS for aroM; RegulonDB:STMS1H000743" CDS 441860..442537 /gene="aroM" /locus_tag="STM0390" /note="similar to E. coli protein of aro operon, regulated by aroR (AAC73493.1); Blastp hit to AAC73493.1 (225 aa), 77% identity in aa 1 - 225" /codon_start=1 /transl_table=11 /product="protein of aro operon, regulated by aroR" /protein_id="NP_459385.1" /db_xref="GeneID:1251909" /translation="MSASLAILTIGVVPMSEVLPLLTEYIDEQHITHHSLLGKMSRED VMADYAVEPGDDPLLTLLNDNQIAHVSRQKVERDLQSVVEVLDNQGYDVIILMSTAAI KSMAARNSILLEPLRIIPPLVASIVDGHQVGVIVPVAELLAAQEKKWQVLQMPPVYSL ANPVHGSEQQLIDAGQALLDQGADVIMLDCLGFHQRHRDILQQALDVPVLLSNVLIAR LASELLV" misc_feature 441860..442531 /gene="aroM" /locus_tag="STM0390" /note="hypothetical protein; Provisional; Region: PRK10481" /db_xref="CDD:182491" gene 442595..442892 /gene="yaiE" /locus_tag="STM0391" /db_xref="GeneID:1251910" regulatory 442595..442600 /regulatory_class="ribosome_binding_site" /gene="yaiE" /locus_tag="STM0391" /note="putative RBS for yaiE; RegulonDB:STMS1H000744" CDS 442608..442892 /gene="yaiE" /locus_tag="STM0391" /note="similar to E. coli orf, hypothetical protein (AAC73494.1); Blastp hit to AAC73494.1 (94 aa), 86% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459386.1" /db_xref="GeneID:1251910" /translation="MLQSNEYFSGKVKSIGFTSSSTGRASVGVMAEGEYTFGTAEPEE MTVVSGALKVLLPGTVEWKVYTAGEVFNVPGHSEFHLQVAEPASYLCRYL" misc_feature 442608..442889 /gene="yaiE" /locus_tag="STM0391" /note="pyrimidine/purine nucleoside phosphorylase; Region: PRK10579" /db_xref="CDD:182565" gene complement(442930..443853) /gene="rdgC" /locus_tag="STM0392" /db_xref="GeneID:1251911" CDS complement(442930..443841) /gene="rdgC" /locus_tag="STM0392" /note="similar to E. coli orf, hypothetical protein (AAC73496.1); Blastp hit to AAC73496.1 (303 aa), 93% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="putative exonuclease involved in removal of stalled replication fork" /protein_id="NP_459387.1" /db_xref="GeneID:1251911" /translation="MLWFKNLMVYRLSRDITLRAEEMEKQLASMTFTPCGSQDMAKMG WVPPMGSHSDALTHTANGQIIICARKEEKILPSPVIKQALEAKIQKLEADQGRKLKKT EKDSLKDEVLHSLLPRAFSRFSQTMMWIDTVNGLIMVDCASAKKAEDTLALLRKSLGS LPVVPLALENPIELTLTEWVRSGTVAQGFQLLDEAELKAMLEDGGVIRAKKQDLVSDE IAVHIEAGKVVTKLALDWQQRIQFVMCDDGSIKRLKFCDELRDQNEDIDREDFAQRFD ADFILMTGELAALIQSLVEGLGGEAQR" misc_feature complement(442933..443838) /gene="rdgC" /locus_tag="STM0392" /note="recombination associated protein; Reviewed; Region: rdgC; PRK00321" /db_xref="CDD:234726" regulatory complement(443848..443853) /regulatory_class="ribosome_binding_site" /gene="rdgC" /locus_tag="STM0392" /note="putative RBS for rdgC; RegulonDB:STMS1H000745" gene 443955..444875 /gene="yajF" /locus_tag="STM0393" /db_xref="GeneID:1251912" regulatory 443955..443960 /regulatory_class="ribosome_binding_site" /gene="yajF" /locus_tag="STM0393" /note="putative RBS for yajF; RegulonDB:STMS1H000746" CDS 443967..444875 /gene="yajF" /locus_tag="STM0393" /note="similar to E. coli possible NAGC-like transcriptional regulator (AAC73497.1); Blastp hit to AAC73497.1 (348 aa), 88% identity in aa 47 - 346" /codon_start=1 /transl_table=11 /product="putative sugar kinase/putative transcriptional regulator (NagC/XylR family)" /protein_id="NP_459388.1" /db_xref="GeneID:1251912" /translation="MRIGIDLGGTKTEVIALDDAGEQRFRHRLPTPREDYQQTIETIA TLVDMAEQATGQTGSVGIGIPGSLSPYTGVVKNANSTWLNGQPFDSDVSRRLKREVRL ANDANCLAVSEAVDGAAAGAQTVFAVIIGTGCGAGVALNGRAHIGGNGTAGEWGHNPL PWMDDDELRYREEIPCYCGKQGCIETFISGTGFATDYQRLSGNALKGDEIIRLVDAQD AVAELALSRYELRLAKALSHVVNILDPDVIVLGGGMSNVERLYKTVPSLMKSFVFGGE CETPVRKARHGDSSGVRGAAWLWPLA" misc_feature 443967..444866 /gene="yajF" /locus_tag="STM0393" /note="fructokinase; Reviewed; Region: PRK09557" /db_xref="CDD:236565" gene complement(444897..446125) /gene="araJ" /locus_tag="STM0394" /db_xref="GeneID:1251913" CDS complement(444897..446069) /gene="araJ" /locus_tag="STM0394" /note="similar to E. coli involved in either transport or processing of arabinose polymers (AAC73499.1); Blastp hit to AAC73499.1 (394 aa), 85% identity in aa 1 - 388" /codon_start=1 /transl_table=11 /product="MFS family, arabinose polymer transporter" /protein_id="NP_459389.1" /db_xref="GeneID:1251913" /translation="MKKVIFSLALGTFGLGMAEFGIMGVLTELARDVGITIPAAGHMI SFYAFGVVLGAPVMALFSSRFSLKHILLFLVMLCVMGNAIFTFSSSYLMLAVGRLVSG FPHGAFFGVGAIVLSKIIRPGKVTAAVAGMVSGMTVANLVGIPFGTYLSQEFSWRYTF LLIAVFNIAVLTAIFFWVPDIRDKAQGSLREQFHFLRSPSPWLIFAATMFGNAGVFAW FSYIKPFMMYISGFSETSMTFIMMLVGLGMVLGNLLSGKLSGRYTPLRIAVVTDLVIV LSLMALFFFSGYKTTSLTFAFICCAGLFALSAPLQILLLQNAKGGELLGAAGGQIAFN LGSAIGAWCGGLMLTLGFAYHYVALPAALLSFSAMSSLLVYGRLKHKQPSVTPVAG" misc_feature complement(444924..446069) /gene="araJ" /locus_tag="STM0394" /note="MFS transport protein AraJ; Provisional; Region: PRK10091" /db_xref="CDD:182234" protein_bind complement(446055..446075) /gene="araJ" /locus_tag="STM0394" /note="putative binding site for CRP, RegulonDB: STMS1H000039" /bound_moiety="CRP" regulatory complement(446072..446077) /regulatory_class="ribosome_binding_site" /gene="araJ" /locus_tag="STM0394" /note="putative RBS for araJ; RegulonDB:STMS1H000747" regulatory complement(446101..446109) /regulatory_class="minus_10_signal" /gene="araJ" /locus_tag="STM0394" /note="putative -10_signal for araJ; RegulonDB:STMLTH004632" regulatory complement(446117..446125) /regulatory_class="minus_35_signal" /gene="araJ" /locus_tag="STM0394" /note="putative -35_signal for araJ; RegulonDB:STMLTH004632" protein_bind complement(446204..446215) /note="putative binding site for CRP, RegulonDB: STMS1H000066" /bound_moiety="CRP" protein_bind complement(446222..446233) /note="putative binding site for AraC, RegulonDB: STMS1H000005" /bound_moiety="AraC" gene complement(446242..449396) /gene="sbcC" /locus_tag="STM0395" /db_xref="GeneID:1251914" CDS complement(446242..449382) /gene="sbcC" /locus_tag="STM0395" /note="similar to E. coli ATP-dependent dsDNA exonuclease (AAC73500.1); Blastp hit to AAC73500.1 (1048 aa), 70% identity in aa 1 - 1048" /codon_start=1 /transl_table=11 /product="ATP-dependent dsDNA exonuclease" /protein_id="NP_459390.1" /db_xref="GeneID:1251914" /translation="MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKT TLLDAICLALYHETPRLNTVSQSQNDLMTRDTAECLAEVEFEVKGEAWRAFWSQNRAR NQPDGNLQAPRVELARCSDGKIFADKVKDKLEMIATLTGLDYGRFTRSMLLSQGQFAA FLNAKAKERAELLEELTGTEIYGQISAQVFEKHKSARLELEKLQAQASGVALLADEQL QQLEASLQALTDEEKRLLADQQGQQQHLHWLTRKNELHTELHARQQALYAAQEAREKA QPQLAALTLAQPARQLRPHWERIQEQTRAVERVRQHSDEVNARLQSAYRLRQRIRACA HRQFTQLNATGQRLKTWLAEHDGIRVWRSELAGWRALLTQQSHDRAQLSQWQQQLLSD TRQRDALPPLTLDLTPQALAEARALHTRQRPLRHRLAALQGQILPKQKRQAQLQAAIA RHHQEQAQYTQRLADKRLSYKTKAQELADVRTICEQEARIKDLESQRAHLQSGQPCPL CGSTTHPAIAAYQALELSANQTRRDALEKEVKTLAEEGAALRGQLDALTQQLQRDESE AQSLLQEEQALTEEWQTLCATLGVQLQPQEDLAGWLTAAEEHEQQLDQLSQRHALQTQ IAAHTEQVARFTAQIAQRQASLTADLAQYTLSLPAPEDEASWLNERADEAKIWQQRQT EFADLQMQIDRLAPLLETLPQTDTADSDDDVPLDNWRQAHDECVSLQSQLQTLQEQTT QEQQRAAEAIAHFDAALKNSPFDSQATFLAALLDEETVTRLEKQQQTLESQLQQAKAL SAQSAQALADHQQQPPAGLDPTCTAEQLAQRLTQLAQQLRENTTRQGEIRQQIKQDAD NRQRQRALMTEMKQASQQVEDWGYLNALIGSKEGDKFRKFAQGLTLDNLVWLANHQLT RLHGRYLLQRKASDALELEVVDTWQADAVRDTRTLSGGESFLVSLALALALSDLVSHK TRIDSLFLDEGFGTLDSETLDAALDALDALNASGKTIGVISHVEAMKERIPVQIKVKK INGLGYSKLDKAFAVE" misc_feature complement(446245..449382) /gene="sbcC" /locus_tag="STM0395" /note="exonuclease subunit SbcC; Provisional; Region: PRK10246" /db_xref="CDD:182330" gene complement(449379..450592) /gene="sbcD" /locus_tag="STM0396" /db_xref="GeneID:1251915" CDS complement(449379..450581) /gene="sbcD" /locus_tag="STM0396" /note="similar to E. coli ATP-dependent dsDNA exonuclease (AAC73501.1); Blastp hit to AAC73501.1 (400 aa), 84% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="ATP-dependent dsDNA exonuclease" /protein_id="NP_459391.1" /db_xref="GeneID:1251915" /translation="MRILHTSDWHLGQNFYSKSRAAEHQAFLDWLLETAQAHQVDAII VAGDIFDTGSPPSYARELYNRFVVNLQQTGCHLVVLAGNHDSVATLNESRDILAFLNT TVIASAGYAPRLLHRRDGSPGAVLCPIPFLRPRDIITSQAGLSGSEKQQQLLHAIADY YQQQYQEACQLRGERKLPVIATGHLTTVGASKSDAVRDIYIGTLDAFPAQHFPPADYI ALGHIHRAQCVGGTEHIRYCGSPIALSFDECGKSKCVHLVTFEQGKWQSTESLAVPVT QPLAVLKGDLASITEQLEQWRGVEQSPPVWLDIEITTDDYLHDIQRRIQTLTESLPVE VLLVRRSREQRERSLANERRETLSELSVEEVFARRLALEALDPPQRERLNQLFSSTLY ALNEEHEA" misc_feature complement(449382..450581) /gene="sbcD" /locus_tag="STM0396" /note="exonuclease subunit SbcD; Provisional; Region: PRK10966" /db_xref="CDD:182871" regulatory complement(449391..449396) /regulatory_class="ribosome_binding_site" /gene="sbcD" /locus_tag="STM0396" /note="putative RBS for sbcC; RegulonDB:STMS1H000748" regulatory complement(450587..450592) /regulatory_class="ribosome_binding_site" /gene="sbcD" /locus_tag="STM0396" /note="putative RBS for sbcD; RegulonDB:STMS1H000749" gene 450723..451485 /gene="phoB" /locus_tag="STM0397" /db_xref="GeneID:1251916" regulatory 450723..450731 /regulatory_class="minus_35_signal" /gene="phoB" /locus_tag="STM0397" /note="putative -35_signal for phoB; RegulonDB:STMLTH004636" protein_bind 450725..450743 /gene="phoB" /locus_tag="STM0397" /note="putative binding site for PhoB, RegulonDB: STMS1H000342" /bound_moiety="PhoB" regulatory 450750..450758 /regulatory_class="minus_10_signal" /gene="phoB" /locus_tag="STM0397" /note="putative -10_signal for phoB; RegulonDB:STMLTH004636" regulatory 450785..450790 /regulatory_class="ribosome_binding_site" /gene="phoB" /locus_tag="STM0397" /note="putative RBS for phoB; RegulonDB:STMS1H000750" CDS 450796..451485 /gene="phoB" /locus_tag="STM0397" /note="regulates pho regulon (OmpR family); similar to E. coli positive response regulator for pho regulon, sensor is PhoR (or CreC) (AAC73502.1); Blastp hit to AAC73502.1 (229 aa), 95% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with PhoR (or CreC)" /protein_id="NP_459392.1" /db_xref="GeneID:1251916" /translation="MARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNE PWPDLILLDWMLPGGSGLQFIKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDY ITKPFSPKELVARIKAVMRRISPMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEF KLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALEHSGHDRMVQTV RGTGYRFSTRF" misc_feature 450796..451482 /gene="phoB" /locus_tag="STM0397" /note="phosphate response regulator transcription factor PhoB; Region: PRK10161" /db_xref="CDD:182277" gene 451540..452850 /gene="phoR" /locus_tag="STM0398" /db_xref="GeneID:1251917" regulatory 451540..451545 /regulatory_class="ribosome_binding_site" /gene="phoR" /locus_tag="STM0398" /note="putative RBS for phoR; RegulonDB:STMS1H000751" CDS 451555..452850 /gene="phoR" /locus_tag="STM0398" /EC_number="2.7.3.-" /note="similar to E. coli positive and negative sensor protein for pho regulon (AAC73503.1); Blastp hit to AAC73503.1 (431 aa), 90% identity in aa 1 - 431" /codon_start=1 /transl_table=11 /product="sensory kinase in two-component regulatory system with PhoB, regulates pho regulon" /protein_id="NP_459393.1" /db_xref="GeneID:1251917" /translation="MLERLSWKRLVLELVLCCIPALILSAFFGYLPWFLLAAVTGLLV WHFWNLLRLSWWLWVDRSMTPPPGRGSWEPLLYGLHQMQLRNKKRRRELGNLIKRFRS GAESLPDAVVLTTEEGGIFWCNGLAQQILGLRWPDDNGQNILNLLRYPEFTQYLKTRD FTRPLHLVLNTGRHLEIRVMPYTDKQLLMVARDVTQMHQLEGARRNFFANVSHELRTP LTVLQGYLEMMQEQALEGATREKALHTMREQTYRMEGLVKQLLTLSKIEAAPALLLNE KVDVPMMLRVVEREAQTLSQQKHTFTFEVDDSLSVLGNEEQLRSAISNLVYNAVNHTP AGTHITVSWRRVAHGAEFCIQDNGPGIAAEHIPRLTERFYRVDKARSRQTGGSGLGLA IVKHALNHHESRLEIDSSPGKGTRFSFVLPERLIAKNSD" misc_feature 451555..452844 /gene="phoR" /locus_tag="STM0398" /note="phosphate regulon sensor histidine kinase PhoR; Region: phoR; PRK11006" /db_xref="CDD:182895" gene 453243..454578 /gene="brnQ" /locus_tag="STM0399" /db_xref="GeneID:1251918" regulatory 453243..453248 /regulatory_class="ribosome_binding_site" /gene="brnQ" /locus_tag="STM0399" /note="putative RBS for brnQ; RegulonDB:STMS1H000752" CDS 453259..454578 /gene="brnQ" /locus_tag="STM0399" /note="branched-chain amino acid transport system II carrier protein(liv-II). (SW:BRNQ_SALTY)" /codon_start=1 /transl_table=11 /product="LIVCS family, branched chain amino acid transporter system II (LIV-II)" /protein_id="NP_459394.1" /db_xref="GeneID:1251918" /translation="MTHQLKSRDIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTA AIGFLITAVGLPVLTVVALAKVGGGVDSLSTPIGKVAGLLLATVCYLAVGPLFATPRT ATVSFEVGIAPLTGDSAMPLLIYSVVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALV ILSVAAIVWPAGPISNALDAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIVNAARSRGV TEARLLTRYTVWAGLMAGVGLTLLYLALFRLGSDSATLVDQSANGAAILHAYVQHTFG GAGSFLLAALIFIACLVTAVGLTCACAEFFAQYIPLSYRTLVFILGGFSMVVSNLGLS HLIQISIPVLTAIYPPCIALVVLSFTRSWWHNSTRIIAPAMFISLLFGILDGIKASAF GDMLPAWSQRLPLAEQGLAWLMPTVVMVILAIIWDRAAGRQVTSSAH" misc_feature 453259..454575 /gene="brnQ" /locus_tag="STM0399" /note="branched-chain amino acid transporter carrier protein BrnQ; Region: PRK15433" /db_xref="CDD:185331" gene 454644..456023 /gene="proY" /locus_tag="STM0400" /db_xref="GeneID:1251919" regulatory 454644..454649 /regulatory_class="ribosome_binding_site" /gene="proY" /locus_tag="STM0400" /note="putative RBS for proY; RegulonDB:STMS1H000753" CDS 454653..456023 /gene="proY" /locus_tag="STM0400" /note="proline-specific permease PROY. (SW:PROY_SALTY)" /codon_start=1 /transl_table=11 /product="putative APC family, proline transporter" /protein_id="NP_459395.1" /db_xref="GeneID:1251919" /translation="MESNNKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSV LLAYIIGGVAAYIIMRALGEMSVHNPAASSFSRYAQENLGPLAGYITGWTYCFEILIV AIADVTAFGIYMGVWFPAVPHWIWVLSVVLIICAINLMSVKVFGELEFWFSFFKVATI IIMIVAGIGIIVWGIGNGGQPTGIHNLWSNGGFFSNGWLGMIMSLQMVMFAYGGIEII GITAGEAKDPEKSIPRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQH MGITFAASILNFVVLTASLSAINSDVFGVGRMLHGMAEQGSAPKVFAKTSRRGIPWVT VLVMTIALLFAVYLNYIMPENVFLVIASLATFATVWVWIMILLSQIAFRRRLPPEEVK ALKFKVPGGVVTTIAGLIFLVFIIALIGYHPDTRISLYVGFAWIVLLLIGWIFKRRRD RQLAQA" misc_feature 454653..456020 /gene="proY" /locus_tag="STM0400" /note="putative proline-specific permease; Provisional; Region: proY; PRK10580" /db_xref="CDD:182566" gene 456172..458002 /gene="malZ" /locus_tag="STM0401" /db_xref="GeneID:1251920" regulatory 456172..456177 /regulatory_class="ribosome_binding_site" /gene="malZ" /locus_tag="STM0401" /note="putative RBS for malZ; RegulonDB:STMS1H000754" CDS 456185..458002 /gene="malZ" /locus_tag="STM0401" /EC_number="3.2.1.20" /note="similar to E. coli maltodextrin glucosidase (AAC73506.1); Blastp hit to AAC73506.1 (605 aa), 83% identity in aa 2 - 605" /codon_start=1 /transl_table=11 /product="maltodextrin glucosidase" /protein_id="NP_459396.1" /db_xref="GeneID:1251920" /translation="MLNAWHLPVAPFVKQHNDKLTITLWLSGENPPSRVTLRSEFDNE EISLAMRKQRRQPQPGVTAWRATLNIALGQPRRRYSFKLLWHDRQLWFTPQGFSRFPP ARLEQFAVDVPDSGPQWVADQIFYQIFPDRFARSQSREAGQDRVYYHHAAGQEIVLRD WDDPLTPQAGGSTFYGGCLNGICEKLPYLKKLGVTALYLNPVFTAPSVHKYDTEDYRH VDPQFGGDRALLRLRRKTQVQGMRLVLDGVFNHSGDSHVWFDRHNRSTGGACHHPDSP WRDWYSFSPQGVALDWLGYPSLPKLDYQSETLVDEIYRGEDSIVRHWLKAPWNMDGWR LDVVHMLGEAGGARHNLQHVAGITRAAKEAQPEAYIVGEHFGDARQWLQADAEDAAMN YRGFTFPLWGFLANTDIAYEPQHIDARTCIAWMDNYRAGLSHQQQLRMFNQLDSHDTA RFKTLLGKDAARLPLAVVWLFTWPGVPCIYYGDEVGVDGANDPMCRKPFPWDERKQDG NLLALYQRMAKLRQSSLALRRGGCQALYAEGDVVVFVRVYQQQRALVAINRGEACEVA LEALPLLNVAGWQCKTGSGDIREGRLSLPAISATVWMNR" misc_feature 456185..457972 /gene="malZ" /locus_tag="STM0401" /note="maltodextrin glucosidase; Provisional; Region: PRK10785" /db_xref="CDD:236759" gene complement(458074..458684) /locus_tag="STM0402" /db_xref="GeneID:1251921" CDS complement(458074..458676) /locus_tag="STM0402" /EC_number="3.2.1.20" /note="similar to E. coli alkyl hydroperoxide reductase, C22 subunit; detoxification of hydroperoxides (AAC73706.1); Blastp hit to AAC73706.1 (187 aa), 36% identity in aa 1 - 186" /codon_start=1 /transl_table=11 /product="putative thiol - alkyl hydroperoxide reductase" /protein_id="NP_459397.1" /db_xref="GeneID:1251921" /translation="MVLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPM DFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAM VADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVDA LQFHEEHGDVCPAQWEKGKEGMNASPDGVAKYLAENISSL" misc_feature complement(458077..458676) /locus_tag="STM0402" /note="peroxiredoxin C; Region: PRK15000" /db_xref="CDD:184962" regulatory complement(458679..458684) /regulatory_class="ribosome_binding_site" /locus_tag="STM0402" /note="putative RBS for STM0402; RegulonDB:STMS1H000755" gene complement(458886..459478) /gene="yajB" /locus_tag="STM0403" /db_xref="GeneID:1251922" CDS complement(458886..459467) /gene="yajB" /locus_tag="STM0403" /note="similar to E. coli putative glycoprotein (AAC73507.1); Blastp hit to AAC73507.1 (193 aa), 87% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459398.1" /db_xref="GeneID:1251922" /translation="MNFLAHLHLAHLADSSLSGNLLADFVRGNPATHYPPDVVEGIYM HRRIDVMTDNLPEVREAREWFRHETRRVAPITLDVMWDHFLSRHWTQISPDFPLQAFV GYAHAQVATILPDSPPRFVNLNDYLWSEKWLERYRDMDFIQNVLNGMANRRPRLDALR DSWYDLDAHYDALEERFWHFYPRMMAQAARKAL" misc_feature complement(458889..459467) /gene="yajB" /locus_tag="STM0403" /note="ACP phosphodiesterase; Region: PRK10045" /db_xref="CDD:182207" regulatory complement(459473..459478) /regulatory_class="ribosome_binding_site" /gene="yajB" /locus_tag="STM0403" /note="putative RBS for yajB; RegulonDB:STMS1H000756" gene 459561..460625 /gene="queA" /locus_tag="STM0404" /db_xref="GeneID:1251923" CDS 459561..460625 /gene="queA" /locus_tag="STM0404" /EC_number="5.-.-.-" /note="similar to E. coli synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase (AAC73508.1); Blastp hit to AAC73508.1 (356 aa), 94% identity in aa 1 - 353" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine-tRNA ribosyltransferase-isomerase" /protein_id="NP_459399.1" /db_xref="GeneID:1251923" /translation="MRVTDFSFELPESLIAHYPQPERSRCRLLSLEGPTGALTHGTFT DLLDKLNPGDLLVFNNTRVIPARLFGRKASGGKIEVLVERMLDDKRILAHIRASKAPK PGTELLLGDDESIHATMTARHGALFEVEFNDPRPVLDILNAIGHMPLPPYIDRPDEDA DRELYQTVYSEKPGAVAAPTAGLHFDEPLLAALREKGVEMAFVTLHVGAGTFQPVRVD TIEDHIMHSEYAEVPQEVVDAVLAAKARGNRVIAVGTTSVRSLESAAQAAKSDLIEPF FGDTQIFIYPGYQYKVIDALITNFHLPESTLIMLVSAFAGYQHTMNAYKTAVEQKYRF FSYGDAMFITYNPQAISERP" misc_feature 459561..460592 /gene="queA" /locus_tag="STM0404" /note="S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional; Region: queA; PRK00147" /db_xref="CDD:234666" gene 460811..461949 /gene="tgt" /locus_tag="STM0405" /db_xref="GeneID:1251924" regulatory 460811..460816 /regulatory_class="ribosome_binding_site" /gene="tgt" /locus_tag="STM0405" /note="putative RBS for tgt; RegulonDB:STMS1H000757" CDS 460822..461949 /gene="tgt" /locus_tag="STM0405" /EC_number="2.4.2.29" /note="similar to E. coli tRNA-guanine transglycosylase (AAC73509.1); Blastp hit to AAC73509.1 (375 aa), 97% identity in aa 1 - 375" /codon_start=1 /transl_table=11 /product="tRNA-guanine transglycosylase" /protein_id="NP_459400.1" /db_xref="GeneID:1251924" /translation="MKFELDTTDGRARRGRLVFDRGVVETPAFMPVGTYGTVKGMTPE EVEATGAQIILGNTFHLWLRPGQEIMKLHGDLHDFMQWKGPILTDSGGFQVFSLGDIR KITEQGVHFRNPINGDPIFLDPEKSMEIQYDLGSDIVMIFDECTPYPADWDYAKRSME MSLRWAKRSRDRFDSLGNKNALFGIIQGSVYEDLRDISVKGLVEIGFDGYAVGGLAVG EPKADMHRILEHVCPQIPADKPRYLMGVGKPEDLVEGVRRGIDMFDCVMPTRNARNGH LFVTDGVVKIRNAKHKSDTSPLDAECDCYTCRNYSRAYLHHLDRCNEILGARLNTIHN LRYYQRLMAGLRKAIEEGKLESFVTEFYQRQGRPVPPLNVD" misc_feature 460822..461922 /gene="tgt" /locus_tag="STM0405" /note="Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]; Region: Tgt; COG0343" /db_xref="CDD:440112" gene 461960..462304 /gene="yajC" /locus_tag="STM0406" /db_xref="GeneID:1251925" regulatory 461960..461965 /regulatory_class="ribosome_binding_site" /gene="yajC" /locus_tag="STM0406" /note="putative RBS for yajC; RegulonDB:STMS1H000758" CDS 461972..462304 /gene="yajC" /locus_tag="STM0406" /note="similar to E. coli orf, hypothetical protein (AAC73510.1); Blastp hit to AAC73510.1 (110 aa), 99% identity in aa 1 - 110" /codon_start=1 /transl_table=11 /product="preprotein translocase IISP family, membrane subunit" /protein_id="NP_459401.1" /db_xref="GeneID:1251925" /translation="MSFFISDAVAATGAPAQGSPMSLILMLVVFGLIFYFMILRPQQK RTKEHKKLMDSIAKGDEVLTNGGLVGRVTKVAEAGYIAIALNDTTEVVIKRDFVAAVL PKGTMKAL" misc_feature 461978..462301 /gene="yajC" /locus_tag="STM0406" /note="preprotein translocase subunit YajC; Validated; Region: yajC; PRK05585" /db_xref="CDD:235518" gene 462320..464179 /gene="secD" /locus_tag="STM0407" /db_xref="GeneID:1251926" regulatory 462320..462325 /regulatory_class="ribosome_binding_site" /gene="secD" /locus_tag="STM0407" /note="putative RBS for secD; RegulonDB:STMS1H000759" CDS 462332..464179 /gene="secD" /locus_tag="STM0407" /note="similar to E. coli protein secretion; membrane protein, part of the channel (AAC73511.1); Blastp hit to AAC73511.1 (615 aa), 94% identity in aa 1 - 615" /codon_start=1 /transl_table=11 /product="preprotein translocase, IISP family, part of the channel" /protein_id="NP_459402.1" /db_xref="GeneID:1251926" /translation="MLNRYPLWKYIMLVVVIIVGLLYALPNLYGEDPAVQITGVRGVA ASEQTLIQVQKTLQEEKIPAKSVALEEGAILARFDTTDTQLRAREALMSVLGDKYVVA LNLAPATPRWLAAIHADPMKLGLDLRGGVHFLMEVDIDTALGKLQEQNIDSLRSDLRE KGIPYTTVRKENNYGLSITFRDSKARDEAIAYLTPRHRDLVISSQSGNQLRAVMTDAR LSEAREYAVQQNINILRNRVNQLGVAEPVVQRQGADRIVVELPGIQDTARAKEILGAT ATLEFRLVNTNVDQAAAAAGRVPGDSEVKQTREGQPVVLYKRVILTGDHITDSTSSQD EYNQPQVNISLDSAGGNIMSNFTKDNIGKPMATLFVEYKDSGKKDANGRAVLVKQEEV INIANIQSRLGNSFRITGISNPNEARQLSLLLRAGALIAPIQIVEERTIGPTLGMQNI KQGLEACLAGLVVSILFMIFFYKKFGLIATSALVANLVLIVGIMSLLPGATLSMPGIA GIVLTLAVAVDANVLINERIKEELSNGRTVQQAINEGYAGAFSSIFDANITTLIKVII LYAVGTGAIKGFAITTGIGVATSMFTAIIGTRAIVNLLYGGKRVTKLSI" misc_feature 462335..462640 /gene="secD" /locus_tag="STM0407" /note="SecD export protein N-terminal TM region; Region: SecD-TM1; pfam13721" /db_xref="CDD:463968" misc_feature 462353..464176 /gene="secD" /locus_tag="STM0407" /note="preprotein translocase subunit SecD; Reviewed; Region: secD; PRK05812" /db_xref="CDD:235615" gene 464178..465161 /gene="secF" /locus_tag="STM0408" /db_xref="GeneID:1251927" regulatory 464178..464183 /regulatory_class="ribosome_binding_site" /gene="secF" /locus_tag="STM0408" /note="putative RBS for secF; RegulonDB:STMS1H000760" CDS 464190..465161 /gene="secF" /locus_tag="STM0408" /note="similar to E. coli protein secretion, membrane protein (AAC73512.1); Blastp hit to AAC73512.1 (323 aa), 95% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="preprotein translocase, IISP family, membrane subunit" /protein_id="NP_459403.1" /db_xref="GeneID:1251927" /translation="MAQEYTVEQLNHGRKVYDFMRWDFWAFGISGLLLIAAIVIMGVR GFNWGLDFTGGTVIEITLEKPAEMDVMREALQKAGYEEPQLQNFGSSHDIMVRMPPTE GETGGQVLGSKVVTIINEATNQNAAVKRIEFVGPSVGADLAQTGAMALLVALISILVY VGFRFEWRLAAGVVIALAHDVIITLGILSLFHIEIDLTIVASLMSVIGYSLNDSIVVS DRIRENFRKIRRGTPYEIFNVSLTQTLHRTLITSGTTLVVILMLYLFGGPVLEGFSLT MLIGVSIGTASSIYVASALALKLGMKREHMLQQKVEKEGADQPSILP" misc_feature 464214..465095 /gene="secF" /locus_tag="STM0408" /note="Preprotein translocase subunit SecF [Intracellular trafficking, secretion, and vesicular transport]; Region: SecF; COG0341" /db_xref="CDD:440110" gene 465301..465674 /locus_tag="STM0409" /db_xref="GeneID:1251928" regulatory 465301..465306 /regulatory_class="ribosome_binding_site" /locus_tag="STM0409" /note="putative RBS for STM0409; RegulonDB:STMS1H000761" CDS 465309..465674 /locus_tag="STM0409" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459404.1" /db_xref="GeneID:1251928" /translation="MKNLINWFEIPVTDMARAIAFYEQVMQISLRRETMDGADLAVFP YAEPGPGGALIKQDDVAPVAQGVVIYLHTADLLASIERVVLAGGKCVLEPMVPGDDIG TIALFIDSEGNRIGLHQPA" misc_feature 465321..465665 /locus_tag="STM0409" /note="N-terminal domain of Streptomyces griseus SgaA and similar domains; Region: SgaA_N_like; cd07247" /db_xref="CDD:319911" gene 465700..466392 /locus_tag="STM0410" /db_xref="GeneID:1251929" CDS 465700..466392 /locus_tag="STM0410" /codon_start=1 /transl_table=11 /product="putative regulatory protein" /protein_id="NP_459405.1" /db_xref="GeneID:1251929" /translation="MTRRADRLFQIVQILRGRRLTTAALLAQRLAVSERTIYRDIRDL SLSGVPVEGEAGSGYRLMAGFDLPPLMLTHRESEALMVAIRLLKTWGGDSLSRELESA QEKVLAILPEESRRKAEQTRIYAPDLGTSPHSRSAFDLIHQAVSAQQVLALHYRDEAG HLSSRDIQPLGLFFWGEHWLLVAWCERREDYRCFRLDRCLQITPLNRRFRETIDRSLR DFLRKVEHEKMP" misc_feature 465703..>466368 /locus_tag="STM0410" /note="Predicted DNA-binding transcriptional regulator YobV, contains HTH and WYL domains [Transcription]; Region: YobV; COG2378" /db_xref="CDD:441945" gene 466546..466909 /gene="yajD" /locus_tag="STM0411" /db_xref="GeneID:1251930" regulatory 466546..466551 /regulatory_class="ribosome_binding_site" /gene="yajD" /locus_tag="STM0411" /note="putative RBS for yajD; RegulonDB:STMS1H000762" CDS 466562..466909 /gene="yajD" /locus_tag="STM0411" /note="hypothetical 12.6 Kda protein in secF-tsx intergenic region. (SW:YAJD_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459406.1" /db_xref="GeneID:1251930" /translation="MAIIPKNYARLESGYREKALKLFPWVCGRCSREFVYSNLRELTV HHIDHDHTNNPEDGSNWELLCLYCHDHEHSKYTEADQYGSTVIAGEDAQKDVGEATYN PFADLKAMMNKKK" misc_feature 466562..466900 /gene="yajD" /locus_tag="STM0411" /note="HNH nuclease family protein; Region: PRK11295" /db_xref="CDD:236895" misc_feature order(466688..466690,466694..466702,466706..466708, 466739..466744,466754..466759,466766..466768, 466778..466780) /gene="yajD" /locus_tag="STM0411" /note="active site" /db_xref="CDD:238038" gene complement(467157..467483) /locus_tag="STM0412" /db_xref="GeneID:2673775" CDS complement(467157..467483) /locus_tag="STM0412" /note="hypothetical protein 14.5K (gi|1073681)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_446866.1" /db_xref="GeneID:2673775" /translation="MRRRVAPTSHYFRRCHQPKNRPVAIPTSVGAARSCQIVMLNSVS VILPPLLQWQRFAAILNLSGVKLAPVMLPVNTEQCAGVFSFQRQGHRGSSPRNIAPHR VAPAYR" gene complement(467538..468539) /gene="tsx" /locus_tag="STM0413" /db_xref="GeneID:1251932" CDS complement(467538..468401) /gene="tsx" /locus_tag="STM0413" /note="nucleoside-specific channel-forming protein TSX precursor. (SW:TSX_SALTY)" /codon_start=1 /transl_table=11 /product="nucleoside channel; receptor of phage T6 and colicin K" /protein_id="NP_459408.1" /db_xref="GeneID:1251932" /translation="MKKTLLAVSAALALTSSFTANAAENDQPQYLSDWWHQSVNVVGS YHTRFSPKLNNDVYLEYEAFAKKDWFDFYGYIDIPKTFDWGNGNDKGIWSDGSPLFME IEPRFSIDKLTGADLSFGPFKEWYFANNYIYDMGDNKASRQSTWYMGLGTDIDTGLPM GLSLNVYAKYQWQNYGASNENEWDGYRFKVKYFVPITDLWGGKLSYIGFTNFDWGSDL GDDPNRTSNSIASSHILALNYDHWHYSVVARYFHNGGQWQNGAKLNWGDGDFSAKSTG WGGYLVVGYNF" misc_feature complement(467541..468401) /gene="tsx" /locus_tag="STM0413" /note="nucleoside-specific channel-forming protein Tsx; Provisional; Region: PRK15106" /db_xref="CDD:237911" regulatory complement(468407..468412) /regulatory_class="ribosome_binding_site" /gene="tsx" /locus_tag="STM0413" /note="putative RBS for tsx; RegulonDB:STMS1H000763" protein_bind complement(468487..468507) /gene="tsx" /locus_tag="STM0413" /note="putative binding site for CRP, RegulonDB: STMS1H000100" /bound_moiety="CRP" protein_bind complement(468501..468543) /note="putative binding site for CytR, RegulonDB: STMS1H000129" /bound_moiety="CytR" regulatory complement(468515..468523) /regulatory_class="minus_10_signal" /gene="tsx" /locus_tag="STM0413" /note="putative -10_signal for tsx; RegulonDB:STMLTH004651" regulatory complement(468531..468539) /regulatory_class="minus_35_signal" /gene="tsx" /locus_tag="STM0413" /note="putative -35_signal for tsx; RegulonDB:STMLTH004651" protein_bind complement(468541..468561) /note="putative binding site for CRP, RegulonDB: STMS1H000103" /bound_moiety="CRP" protein_bind complement(468553..468571) /note="putative binding site for DeoR, RegulonDB: STMS1H000131" /bound_moiety="DeoR" protein_bind complement(468659..468701) /note="putative binding site for CytR, RegulonDB: STMS1H000128" /bound_moiety="CytR" gene complement(468701..469255) /gene="yajI" /locus_tag="STM0414" /db_xref="GeneID:1251933" CDS complement(468701..469240) /gene="yajI" /locus_tag="STM0414" /note="similar to E. coli orf, hypothetical protein (AAC73515.1); Blastp hit to AAC73515.1 (199 aa), 73% identity in aa 21 - 199" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_459409.1" /db_xref="GeneID:1251933" /translation="MTRRYLRILLVGSLLSLTACAPQSEVRQMHQSISTLNKEMTQLN QETVKITQQNKLNAESTRGVYLLPGANTPARLESQIGTLRMTLLEITPVADGAHATLH IQGESRDPLPAFSATVEYGQLQGTTENYQEVNAQSLLVNAPASLLAPSDVNISLPLKG ITPAQLGFIRIHDIQPVNQ" misc_feature complement(468704..469240) /gene="yajI" /locus_tag="STM0414" /note="hypothetical protein; Provisional; Region: PRK11530" /db_xref="CDD:236923" regulatory complement(469250..469255) /regulatory_class="ribosome_binding_site" /gene="yajI" /locus_tag="STM0414" /note="putative RBS for yajI; RegulonDB:STMS1H000764" gene 469381..469841 /gene="ybaD" /locus_tag="STM0415" /db_xref="GeneID:1251934" regulatory 469381..469386 /regulatory_class="ribosome_binding_site" /gene="ybaD" /locus_tag="STM0415" /note="putative RBS for ybaD; RegulonDB:STMS1H000765" CDS 469392..469841 /gene="ybaD" /locus_tag="STM0415" /note="similar to E. coli orf, hypothetical protein (AAC73516.1); Blastp hit to AAC73516.1 (149 aa), 95% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_459410.1" /db_xref="GeneID:1251934" /translation="MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVA ELVMPRVIKSNDVREPFNEDKLRSGMLRALEKRPVSADDVEMALNHIKSQLRATGERE VPSKMIGNLVMEQLKKLDKVAYIRFASVYRSFEDIKDFGEEIARLQD" misc_feature 469392..469838 /gene="ybaD" /locus_tag="STM0415" /note="Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains [Transcription]; Region: NrdR; COG1327" /db_xref="CDD:440938" gene 469833..470948 /gene="ribD" /locus_tag="STM0416" /db_xref="GeneID:1251935" regulatory 469833..469838 /regulatory_class="ribosome_binding_site" /gene="ybaD" /locus_tag="STM0415" /note="putative RBS for ribD; RegulonDB:STMS1H000766" CDS 469845..470948 /gene="ribD" /locus_tag="STM0416" /EC_number="1.1.1.193" /EC_number="3.5.4.26" /note="bifunctional; similar to E. coli bifunctional pyrimidine deaminase/reductase in pathway of riboflavin synthesis (AAC73517.1); Blastp hit to AAC73517.1 (367 aa), 89% identity in aa 1 - 367" /codon_start=1 /transl_table=11 /product="pyrimidine deaminase" /protein_id="NP_459411.1" /db_xref="GeneID:1251935" /translation="MQDEFYMARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHH RAGEPHAEVHALRMAGAKAKGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQD PNPQVAGRGLYRLQQAGIAVSHGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGR TAMASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWAELDASTQAS YPQENLRQPVRIVIDSQNRVTPAHRIVQQPGETWIARTQEDSRAWPDAVRTISVPAHN GHLDLVVLMMQLGRQQINSIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLC ELPGLEKLADAPQFTFSEIRHVGPDVCLHMVSA" misc_feature 469845..470945 /gene="ribD" /locus_tag="STM0416" /note="bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD; Region: ribD; PRK10786" /db_xref="CDD:182729" gene 471023..471507 /gene="ribH" /locus_tag="STM0417" /db_xref="GeneID:1251936" regulatory 471023..471028 /regulatory_class="ribosome_binding_site" /gene="ribH" /locus_tag="STM0417" /note="putative RBS for ribH; RegulonDB:STMS1H000767" CDS 471037..471507 /gene="ribH" /locus_tag="STM0417" /EC_number="2.5.1.9" /note="similar to E. coli riboflavin synthase, beta chain (AAC73518.1); Blastp hit to AAC73518.1 (156 aa), 91% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="riboflavin synthase, beta chain" /protein_id="NP_459412.1" /db_xref="GeneID:1251936" /translation="MNIIKANVAAPDARVAITIARFNQFINDSLLDGAVDALTRIGQV KDDNITVVWVPGAYELPLATEALAKSGKYDAVVALGTVIRGGTAHFEYVAGGASNGLA SVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAIKA" misc_feature 471043..471501 /gene="ribH" /locus_tag="STM0417" /note="6,7-dimethyl-8-ribityllumazine synthase (Riboflavin synthase beta chain) [Coenzyme transport and metabolism]; Region: RibE; COG0054" /db_xref="CDD:439824" gene 471516..471947 /gene="nusB" /locus_tag="STM0418" /db_xref="GeneID:1251937" regulatory 471516..471521 /regulatory_class="ribosome_binding_site" /gene="nusB" /locus_tag="STM0418" /note="putative RBS for nusB; RegulonDB:STMS1H000768" CDS 471528..471947 /gene="nusB" /locus_tag="STM0418" /note="similar to E. coli transcription termination; L factor (AAC73519.1); Blastp hit to AAC73519.1 (139 aa), 96% identity in aa 1 - 139" /codon_start=1 /transl_table=11 /product="transcription termination; L factor" /protein_id="NP_459413.1" /db_xref="GeneID:1251937" /translation="MKPAARRRARECAVQALYSWQLSQNDIADVEYQFLAEQDVKDVD VLYFRELLSGVATNSAYLDGLMKPYLSRLLEELGQVEKAVLRIALFELSKRSDVPYKV AINEAIELAKTFGAEDSHKFVNGVLDKAAPVIRPNKK" misc_feature 471558..471944 /gene="nusB" /locus_tag="STM0418" /note="transcription antitermination factor NusB; Region: nusB; PRK00202" /db_xref="CDD:234686" gene 472014..473003 /gene="thiL" /locus_tag="STM0419" /db_xref="GeneID:1251938" regulatory 472014..472019 /regulatory_class="ribosome_binding_site" /gene="thiL" /locus_tag="STM0419" /note="putative RBS for thiL; RegulonDB:STMS1H000769" CDS 472026..473003 /gene="thiL" /locus_tag="STM0419" /EC_number="2.7.4.16" /note="thiamine-monophosphate kinase. (SW:THIL_SALTY)" /codon_start=1 /transl_table=11 /product="thiamin-monophosphate kinase" /protein_id="NP_459414.1" /db_xref="GeneID:1251938" /translation="MACGEFSLIARYFDRVRSSRLDVETGIGDDCALLNIPEKQTLAI STDTLVAGNHFLPDIDPADLAYKALAVNLSDLAAMGADPAWLTLALTLPEVDEPWLEA FSDSLFALLNYYDMQLIGGDTTRGPLSMTLGIHGYIPAGRALKRSGAKPGDWIYVTGT PGDSAAGLAVLQNRLQVSEETDAHYLIQRHLRPTPRILHGQALRDIASAAIDLSDGLI SDLGHIVKASGCGARVDVDALPKSDAMMRHVDDGQALRWALSGGEDYELCFTVPELNR GALDVAIGQLGVPFTCIGQMSADIEGLNFVRDGMPVTFDWKGYDHFATP" misc_feature 472026..472991 /gene="thiL" /locus_tag="STM0419" /note="thiamine monophosphate kinase; Provisional; Region: PRK05731" /db_xref="CDD:235583" gene 472970..473496 /gene="pgpA" /locus_tag="STM0420" /db_xref="GeneID:1251939" regulatory 472970..472975 /regulatory_class="ribosome_binding_site" /gene="pgpA" /locus_tag="STM0420" /note="putative RBS for pgpA; RegulonDB:STMS1H000770" CDS 472981..473496 /gene="pgpA" /locus_tag="STM0420" /EC_number="3.1.3.27" /note="similar to E. coli phosphatidylglycerophosphatase (AAC73521.1); Blastp hit to AAC73521.1 (172 aa), 95% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphatase A" /protein_id="NP_459415.1" /db_xref="GeneID:1251939" /translation="MTILPRHKDVAKSRLNLRNPWHLLATGFGSGLSPVVPGTMGSLA AIPFWYLMTFLPWQLYSLVVMFGICIGVYLCHQTAKDMGVHDHGSIVWDEFIGMWITL MALPTTDWQWVAAGFVIFRILDMWKPWPIRWFDRNVHGGMGIMIDDIVAGVISAGILY FIGHHWPLGII" misc_feature 473002..473493 /gene="pgpA" /locus_tag="STM0420" /note="phosphatidylglycerophosphatase A; Provisional; Region: PRK11068" /db_xref="CDD:182942" misc_feature order(473050..473052,473116..473118,473164..473166, 473173..473178,473188..473193,473239..473241, 473248..473256,473263..473268,473272..473277, 473284..473286,473317..473325,473329..473337, 473341..473346,473350..473355,473464..473466) /gene="pgpA" /locus_tag="STM0420" /note="tetramer interfaces [polypeptide binding]; other site" /db_xref="CDD:133477" misc_feature order(473248..473250,473257..473262,473410..473412, 473419..473424) /gene="pgpA" /locus_tag="STM0420" /note="binuclear metal-binding site [ion binding]; other site" /db_xref="CDD:133477" gene complement(473600..474587) /gene="yajO" /locus_tag="STM0421" /db_xref="GeneID:1251940" CDS complement(473600..474574) /gene="yajO" /locus_tag="STM0421" /note="similar to E. coli putative NAD(P)H-dependent xylose reductase (AAC73522.1); Blastp hit to AAC73522.1 (348 aa), 92% identity in aa 25 - 348" /codon_start=1 /transl_table=11 /product="putative oxidoreductase / K + channel protein" /protein_id="NP_459416.1" /db_xref="GeneID:1251940" /translation="MQYNTLGNTDLRVSRLCLGCMTFGEPSRGNHAWTLPEESSRPII KRALEGGINFFDTANSYSDGSSEEIVGRALRDFARRDEVVVATKVFHRVGDLPEGLSR AQILRSIDDSLARLGMEYVDILQIHRWDYTTPIEETLEALNDVVKAGKARYIGASSMH ASQFAQALALQKQHGWAPFVTMQDHYNLIYREEEREMLPLCWQEGVAVIPWSPLARGR LTRPWGETTARLVSDDVGKNLYDESDKNDAQIAERLAGVSEALGATRAQVALGWLLSK RGVAAPIIGASREEQLDELLNAVDLTLKPEQIAELETPYKQHPVVGFK" misc_feature complement(473639..474571) /gene="yajO" /locus_tag="STM0421" /note="Escherichia coli YajO and similar proteins; Region: AKR_EcYajO-like; cd19079" /db_xref="CDD:381305" misc_feature complement(order(473690..473695,473702..473704, 473711..473728,473777..473779,473924..473944, 474026..474028,474101..474106,474191..474196, 474311..474313,474392..474394,474407..474409, 474512..474520)) /gene="yajO" /locus_tag="STM0421" /note="putative active site [active]" /db_xref="CDD:381305" misc_feature complement(order(474194..474196,474311..474313, 474392..474394,474407..474409)) /gene="yajO" /locus_tag="STM0421" /note="catalytic tetrad [active]" /db_xref="CDD:381305" regulatory complement(474582..474587) /regulatory_class="ribosome_binding_site" /gene="yajO" /locus_tag="STM0421" /note="putative RBS for yajO; RegulonDB:STMS1H000771" gene complement(474631..476493) /gene="dxs" /locus_tag="STM0422" /db_xref="GeneID:1251941" CDS complement(474631..476493) /gene="dxs" /locus_tag="STM0422" /EC_number="2.2.-.-" /note="similar to E. coli 1-deoxyxylulose-5-phosphate synthase; flavoprotein (AAC73523.1); Blastp hit to AAC73523.1 (620 aa), 96% identity in aa 1 - 620" /codon_start=1 /transl_table=11 /product="1-deoxyxylulose-5-phosphate synthase; flavoprotein" /protein_id="NP_459417.1" /db_xref="GeneID:1251941" /translation="MSFDIAKYPTLALVDSTQELRLLPKESLPKLCDELRRYLLDSVS RSSGHFASGLGTVELTVALHYVYNTPFDQLIWDVGHQAYPHKILTGRRDKIGTIRQKG GLHPFPWRGESEYDVLSVGHSSTSISAGIGIAVAAEKEGKDRRTVCVIGDGAITAGMA FEAMNHAGDIRPDMLVILNDNEMSISENVGALNNHLAQLLSGKLYSSLREGGKKVFSG VPPIKELLKRTEEHIKGMVVPGTLFEELGFNYIGPVDGHDVMGLISTLKNMRDLKGPQ FLHIMTKKGRGYEPAEKDPITFHAVPKFDPSSGCLPKSSGGLPGYSKIFGDWLCETAA KDSKLMAITPAMREGSGMVEFSRKFPDRYFDVAIAEQHAVTFAAGLAIGGYKPVVAIY STFLQRAYDQVIHDVAIQKLPVMFAIDRAGIVGADGQTHQGAFDLSYLRCIPDMVIMT PSDENECRQMLFTGYHYNDGPTAVRYPRGNAQGVALTPLEKLPIGKGLVKRHGEKLAI LNFGTLMPEAAKVAEALNATLVDMRFVKPLDDTLILEMAAQHDALVTLEENAIMGGAG SGVNEVLMAHRKPVPVLNIGLPDFFIPQGTQEEARAELGLDAAGIEAKIKAWLA" misc_feature complement(474634..476475) /gene="dxs" /locus_tag="STM0422" /note="Deoxyxylulose-5-phosphate synthase [Coenzyme transport and metabolism, Lipid transport and metabolism]; Region: Dxs; COG1154" /db_xref="CDD:440768" gene complement(476517..477431) /gene="ispA" /locus_tag="STM0423" /db_xref="GeneID:1251942" CDS complement(476517..477416) /gene="ispA" /locus_tag="STM0423" /EC_number="2.5.1.10" /note="similar to E. coli geranyltranstransferase (farnesyldiphosphate synthase) (AAC73524.1); Blastp hit to AAC73524.1 (299 aa), 90% identity in aa 1 - 299" /codon_start=1 /transl_table=11 /product="geranyltranstransferase (farnesyldiphosphate synthase)" /protein_id="NP_459418.1" /db_xref="GeneID:1251942" /translation="MDFTQQLQACVTQANQALSRFIAPLPFQNTPVVEAMQYGALLGG KRLRPFLVYATGQMFGVSTATLDAPAAAVECIHAYSLIHDDLPAMDDDDLRRGLPTCH IKFGEANAILAGDALQTLAFAIISDAPMPEVADRDRIAMIAELANASGIAGMCGGQAL DLAAEGQRITLDALERIHRHKTGALIRAAVRLGALSAGDKGRNTLPILDRYAESIGLA FQVQDDILDVVGDTATLGKRQGADQQLGKSTYPALLGLEQARNKARDLIEDARQSLHQ LAAQSLDTSALEALANYIIQRDK" misc_feature complement(476520..477416) /gene="ispA" /locus_tag="STM0423" /note="(2E,6E)-farnesyl diphosphate synthase; Region: PRK10581" /db_xref="CDD:182567" misc_feature complement(order(476676..476678,476691..476693, 476706..476708,476736..476738,476745..476750, 476862..476864,476871..476876,476934..476936, 476943..476945,477129..477134,477168..477170, 477174..477182,477189..477191)) /gene="ispA" /locus_tag="STM0423" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173833" misc_feature complement(order(476670..476684,476691..476708, 476724..476729,477099..477137,477165..477167)) /gene="ispA" /locus_tag="STM0423" /note="active site lid residues [active]" /db_xref="CDD:173833" misc_feature complement(order(476676..476678,476691..476693, 476706..476708,476736..476738,476745..476750)) /gene="ispA" /locus_tag="STM0423" /note="aspartate-rich region 2; other site" /db_xref="CDD:173833" gene complement(477417..477679) /gene="xseB" /locus_tag="STM0424" /db_xref="GeneID:1251943" CDS complement(477417..477659) /gene="xseB" /locus_tag="STM0424" /EC_number="3.1.11.6" /note="similar to E. coli exonuclease VII, small subunit (AAC73525.1); Blastp hit to AAC73525.1 (80 aa), 90% identity in aa 1 - 80" /codon_start=1 /transl_table=11 /product="exonuclease VII, small subunit" /protein_id="NP_459419.1" /db_xref="GeneID:1251943" /translation="MPKKNEAPASFETALSELEHIVTRLESGDLPLEDALNEFERGVQ LARQGQAKLQQAEQRVQILLSDNEEASPEPFIADNE" misc_feature complement(477426..477659) /gene="xseB" /locus_tag="STM0424" /note="exodeoxyribonuclease VII small subunit; Provisional; Region: PRK00977" /db_xref="CDD:179195" regulatory complement(477426..477431) /regulatory_class="ribosome_binding_site" /gene="xseB" /locus_tag="STM0424" /note="putative RBS for ispA; RegulonDB:STMS1H000772" regulatory complement(477674..477679) /regulatory_class="ribosome_binding_site" /gene="xseB" /locus_tag="STM0424" /note="putative RBS for xseB; RegulonDB:STMS1H000773" gene 477869..479317 /gene="thiI" /locus_tag="STM0425" /db_xref="GeneID:1251944" CDS 477869..479317 /gene="thiI" /locus_tag="STM0425" /note="thiamine biosynthesis protein thiI. (SW:THII_SALTY)" /codon_start=1 /transl_table=11 /product="sulfur transfer protein (from cys to ThiS and from IscS to U8-tRNA)" /protein_id="NP_459420.1" /db_xref="GeneID:1251944" /translation="MKFIIKLFPEITIKSQSVRLRFIKILTGNIRNVLKHYDETLAVV RHWDNIEVRAKDENQRLVIRDALTRIPGIHHILEVEDVPFTDMHDIFEKALAQYREQL EGKTFCVRVKRRGKHEFSSIEVERYVGGGLNQHIESARVKLTNPDVTVHLEVEDDRLL LIKGRYEGIGGFPIGTQEDVLSLISGGFDSGVSSYMLMRRGCRVHYCFFNLGGAAHEI GVRQVAHYLWNRFGSSHRVRFVAINFEPVVGEILEKVDDGQMGVVLKRMMVRAASKVA ERYGVQALVTGEALGQVSSQTLTNLRLIDNVSDTLILRPLISYDKEHIINLARQIGTE DFARTMPEYCGVISKSPTVKAIKAKIEAEEENFDFSILDKVVEEANNVDIREIAQQTQ QEVVEVETVSGFGPNDVILDIRSVDEQDDKPLKVEGVDVVSLPFYKLSTKFGDLDQSK TWLLWCERGVMSRLQALYLREQGFANVKVYRP" misc_feature 477875..479005 /gene="thiI" /locus_tag="STM0425" /note="Adenylyl- and sulfurtransferase ThiI (thiamine and tRNA 4-thiouridine biosynthesis) [Coenzyme transport and metabolism, Translation, ribosomal structure and biogenesis]; Region: ThiI; COG0301" /db_xref="CDD:440070" misc_feature 479012..479314 /gene="thiI" /locus_tag="STM0425" /note="thiazole biosynthesis domain; Region: ThiI_C_thiazole; TIGR04271" /db_xref="CDD:275094" misc_feature 479234..479236 /gene="thiI" /locus_tag="STM0425" /note="active site residue [active]" /db_xref="CDD:238089" gene complement(479361..480165) /gene="phnV" /locus_tag="STM0426" /db_xref="GeneID:1251945" CDS complement(479361..480158) /gene="phnV" /locus_tag="STM0426" /note="probable membrane component of 2-aminoethylphosphonate transporter phnV (gi|11354255)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate transporter, memrane component" /protein_id="NP_459421.1" /db_xref="GeneID:1251945" /translation="MLIWSPKGRAAAGVVASVLFIVFFFLPLAVILMSSLSQQWNGIL PSGFTLNHFVNALHGAAWDALLASLTIGFCASLFALLCGVWAALALRQYGVKTQKWLS MVFYLPSAIPSVSVGLGILVAFSQGPLQMNGTLWIVLTAHFVLISAFTFSNVSTGLAR ISADIENVASSLGASPWYRLRHVTLPLLMPWMMSALALSLSLSMGELGATMMIYPPGW TTLPVAIFSLTDRGNIADGAALTIVLVAITLLLMMKLERIAKRLGQK" misc_feature complement(479367..480155) /gene="phnV" /locus_tag="STM0426" /note="2-aminoethylphosphonate ABC transport system, membrane component PhnV; Region: PhnV; TIGR03255" /db_xref="CDD:132299" misc_feature complement(order(479412..479417,479424..479429, 479436..479441,479445..479450,479457..479462, 479490..479495,479523..479528,479535..479546, 479565..479567,479574..479579,479619..479621, 479670..479672,479679..479684,479694..479696, 479700..479705,479712..479714,479718..479720, 479724..479726,479730..479732,479796..479798, 479802..479807,479814..479843,479847..479858, 479886..479888,479901..479906,479913..479918)) /gene="phnV" /locus_tag="STM0426" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(479529..479546,479796..479840)) /gene="phnV" /locus_tag="STM0426" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(479460..479462,479490..479492, 479499..479501,479526..479528,479745..479747, 479796..479798)) /gene="phnV" /locus_tag="STM0426" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(479598..479600,479610..479615, 479631..479669)) /gene="phnV" /locus_tag="STM0426" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(480160..480165) /regulatory_class="ribosome_binding_site" /gene="phnV" /locus_tag="STM0426" /note="putative RBS for phnV; RegulonDB:STMS1H000774" gene complement(480161..481027) /gene="phnU" /locus_tag="STM0427" /db_xref="GeneID:1251946" CDS complement(480161..481021) /gene="phnU" /locus_tag="STM0427" /note="probable membrane component of 2-aminoethylphosphonate transporter phnU (gi|11354254)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate transporter, memrane component" /protein_id="NP_459422.1" /db_xref="GeneID:1251946" /translation="MSLILPLEKPALNLRPLLWLLLPLLVLATLFFWPLSLIVEQALR GANGEIGLETFRQVVDSKRFVGALLNTLQIAFFATAGCLLLGSVMSLILVFIPFPGSE LIGRVVDTFIALPTFLITLAFTFIYGSAGLLNGTLMSLFAFELPPVDFLYSMQGVILA EITVFTPLVMRPLMAALRQIDKSQLEAASILGAHPLRVIGQVIFPAALPALMAGGSLC LLLTTNEFGIVLFIGAKGVNTLPMMVYSKAILESDYTVACMIALINIVLSLGLFSLYR LAASRTGVRS" misc_feature complement(480164..481021) /gene="phnU" /locus_tag="STM0427" /note="2-aminoethylphosphonate transport system permease PhnU; Provisional; Region: PRK15050" /db_xref="CDD:237888" regulatory complement(481022..481027) /regulatory_class="ribosome_binding_site" /gene="phnU" /locus_tag="STM0427" /note="putative RBS for phnU; RegulonDB:STMS1H000775" gene complement(481024..482133) /gene="phnT" /locus_tag="STM0428" /db_xref="GeneID:1251947" CDS complement(481024..482133) /gene="phnT" /locus_tag="STM0428" /note="probable ATPase component of 2-aminoethylphosphonate transporter phnT (gi|11354253)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate transporter ATPase component" /protein_id="NP_459423.1" /db_xref="GeneID:1251947" /translation="MLMKTTTVHAPASQGTSGIVLDSLRVAYHGNVVLKPLSLTIEPG EVLALIGPSGSGKTTVLRAVAGFVQPAGGRILIGDTDVTHLPPYKRGLAMVVQNYALF PHLKVEDNVAFGLRAQKQPKALINERVTQALKTVGMSDYAARYPHQLSGGQQQRVAIA RAIAVRPRVLLLDEPLSALDAQIRHNMVEEIARLHRELPELTILYVTHDQTEALTLAD KIGIMKDGSLIAHGETRALYQHPPNRFAAEFLGRANILSAIALGITEAPGLVDVSCGG AVIRAFSRGSHHGYNKLLCIRPQHLSLTPRSAYSNRFNATLQSVHWQGDLTHLLCDVA GETVRMVLTHVNPLPRVGDKLALWFEPDDAVLIEV" misc_feature complement(481027..482094) /gene="phnT" /locus_tag="STM0428" /note="2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT; Region: PhnT; TIGR03258" /db_xref="CDD:132302" gene complement(482139..483157) /gene="phnS" /locus_tag="STM0429" /db_xref="GeneID:1251948" CDS complement(482139..483152) /gene="phnS" /locus_tag="STM0429" /note="probable periplasmic binding-protein of the 2-aminoethylphosphonate transporter PhnS (gi|11354256)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate transporter, periplasmic-binding component" /protein_id="NP_459424.1" /db_xref="GeneID:1251948" /translation="MKLSRLALLSVFALASAPSWAESVVTVYSIDGLHDGDNSWYQVQ FDAFTKATGITVRYVEGGGGVVVERLAKERTNPQADVLVTAPPFIQRAAAEKLLANFN TDTASAIPDANNLYSPLVKNYLSFIYNSKLLKTAPASWQDLLDGKFKNKLQYSTPGQA ADGTAVMLQAFHSFGSKDAGFAYLGKLQANNVGPSASTGKLTALVNKGEIYVANGDLQ MNLAQMERNPNVKIFWPANDKGERSALAIPYVIGLVQGAPQSENGKKLINFLLSKEAQ TRVSELSWGMPVRSDVTPSDEHYKAATAALEGVQSWQPNWDDVAVSLSADISRWHKVT ESE" misc_feature complement(482157..483152) /gene="phnS" /locus_tag="STM0429" /note="2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein; Region: PhnS; TIGR03227" /db_xref="CDD:132271" regulatory complement(483152..483157) /regulatory_class="ribosome_binding_site" /gene="phnS" /locus_tag="STM0429" /note="putative RBS for phnS; RegulonDB:STMS1H000776" gene complement(483350..484085) /gene="phnR" /locus_tag="STM0430" /db_xref="GeneID:1251949" CDS complement(483350..484069) /gene="phnR" /locus_tag="STM0430" /note="probable repressor protein of GntR family phnR (gi|11354257)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate transport, repressor" /protein_id="NP_459425.1" /db_xref="GeneID:1251949" /translation="MKSIPGDIPQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFN TTRITIRESLAQLESSGLIWRADRRGWFVTPERLWLDPTQNTNFHKLCREQGREPKTA LLSGVLTTVPVEVMEPLQLQPFDQIYLLTRLRYADGRAVCYCENHCLPARVPELLQYD LNGSLTEVYESHYNLVYTSMHLSFYPTAMPAQAAQALGVMEGRPALLLRRLNYDQHGR VLDLDIEYWRHDSLRIEVDTH" misc_feature complement(483353..484045) /gene="phnR" /locus_tag="STM0430" /note="phosphonate utilization transcriptional regulator PhnR; Region: phnR; TIGR03337" /db_xref="CDD:132380" regulatory complement(484080..484085) /regulatory_class="ribosome_binding_site" /gene="phnR" /locus_tag="STM0430" /note="putative RBS for phnR; RegulonDB:STMS1H000777" gene 484203..485312 /gene="phnW" /locus_tag="STM0431" /db_xref="GeneID:1251950" regulatory 484203..484208 /regulatory_class="ribosome_binding_site" /gene="phnW" /locus_tag="STM0431" /note="putative RBS for phnW; RegulonDB:STMS1H000778" CDS 484209..485312 /gene="phnW" /locus_tag="STM0431" /EC_number="2.6.1.-" /note="2-aminoethylphosphonate--pyruvate aminotransferase phnW (gi|11354251)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate transport" /protein_id="NP_459426.1" /db_xref="GeneID:1251950" /translation="MTSRNYLLLTPGPLTTSRTVKEAMLFDSCTWDDDYNIGVVEQIR QQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKVLIVSNGAYGARMVEMAGL MGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNPIDEVGALAHR YGKTYIVDAMSSFGGIPMDIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGH SRSLSLDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQ RSLVAGMRALGFNTLLDDELHSPIITAFYSPEDPQYRFSEFYRRLKEQGFVIYPGKVS QSDCFRIGNIGEVYAADITALLTAIRTAMYWTK" misc_feature 484215..485306 /gene="phnW" /locus_tag="STM0431" /note="2-aminoethylphosphonate--pyruvate transaminase; Region: transamin_PhnW; TIGR02326" /db_xref="CDD:131379" gene 485312..486131 /gene="phnX" /locus_tag="STM0432" /db_xref="GeneID:1251951" regulatory 485312..485317 /regulatory_class="ribosome_binding_site" /gene="phnX" /locus_tag="STM0432" /note="putative RBS for phnX; RegulonDB:STMS1H000779" CDS 485319..486131 /gene="phnX" /locus_tag="STM0432" /EC_number="3.1.3.18" /note="phosphonoacetaldehyde phosphonohydrolase phnX (gi|11354252)" /codon_start=1 /transl_table=11 /product="2-aminoethylphosphonate transport" /protein_id="NP_459427.1" /db_xref="GeneID:1251951" /translation="MMNRIHAVILDWAGTTVDFGSFAPTQIFVEAFRQAFDVEITLAE ARVPMGLGKWQHIEALGKLPAVDARWQAKFGRSMSAADIDAIYAAFMPLQIAKVVDFS SPIAGVIDTIAALRAEGIKIGSCSGYPRAVMERLVPAAAGHGYRPDHWVATDDLAAGG RPGPWMALQNVIALGIDAVAHCVKVDDAAPGISEGLNAGMWTVGLAVSGNEFGATWDA YQTMSKEDVAVRREHAASKLYAAGAHYVVDSLADLPGVIAHINARLAQGERP" misc_feature 485322..486128 /gene="phnX" /locus_tag="STM0432" /note="phosphonoacetaldehyde hydrolase; Provisional; Region: PRK13478" /db_xref="CDD:184075" gene complement(486228..486831) /gene="thiJ" /locus_tag="STM0433" /db_xref="GeneID:1251952" CDS complement(486228..486818) /gene="thiJ" /locus_tag="STM0433" /note="4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme. (SW:THIJ_SALTY)" /codon_start=1 /transl_table=11 /product="4-methyl-5(beta-hydroxyethyl)-thiazole synthesis" /protein_id="NP_459428.1" /db_xref="GeneID:1251952" /translation="MSAQALVCLAPGSEETEAVTTIDLLVRGGIHVTTASVASDGNLT IVCSRGVKLLADAPLVEVADGDYDIIVLPGGIKGAECFRDSPLLVETVKQFHRSGRIV AAICAAAATVLVPHDIFPIGNMTGFPALKDKIPAEQWLDKRVVWDARVKLLTSQGPGT AIDFGLKIIDLLAGREKAHEVASQLVMAAGIYNYYE" misc_feature complement(486231..486818) /gene="thiJ" /locus_tag="STM0433" /note="protein deglycase YajL; Region: PRK11574" /db_xref="CDD:183210" misc_feature complement(486498..486500) /gene="thiJ" /locus_tag="STM0433" /note="conserved cys residue [active]" /db_xref="CDD:153229" gene complement(486781..487703) /gene="apbA" /locus_tag="STM0434" /db_xref="GeneID:1251953" CDS complement(486781..487692) /gene="apbA" /locus_tag="STM0434" /EC_number="1.1.1.169" /note="2-dehydropantoate 2-reductase. (SW:APBA_SALTY)" /codon_start=1 /transl_table=11 /product="ketopantoate reductase" /protein_id="NP_459429.1" /db_xref="GeneID:1251953" /translation="MKITVLGCGALGQLWLSALCKHGHDVQGWLRVPQPYCSVNLIDT DGSFFNESLTANDPDFLAKSELLLVTLKAWQVSDAVRTLASTLPVTSPILLIHNGMGT IEELQNIQQPMLMGTITHAARRDGNIIIHVANGTTHIGPAREQDGDYSYLADILQGVL PDVAWHNNIRAEMWRKLAVNCVINPLTALWNCPNGELRHHTDEINAICEEVAAVIERE GYHTSADDLRYYVEQVIDSTAENISSMLQDVRAMRHTEIDYITGYLLKRARVHGLAVP ENSRLFEMVKRKESEYERSGTGMPRPW" misc_feature complement(486811..487692) /gene="apbA" /locus_tag="STM0434" /note="2-dehydropantoate 2-reductase; Reviewed; Region: PRK06522" /db_xref="CDD:235821" regulatory complement(486826..486831) /regulatory_class="ribosome_binding_site" /gene="thiJ" /locus_tag="STM0433" /note="putative RBS for thiJ; RegulonDB:STMS1H000780" regulatory complement(487698..487703) /regulatory_class="ribosome_binding_site" /gene="apbA" /locus_tag="STM0434" /note="putative RBS for apbA; RegulonDB:STMS1H000781" gene 487800..488309 /gene="yajQ" /locus_tag="STM0435" /db_xref="GeneID:1251954" CDS 487800..488309 /gene="yajQ" /locus_tag="STM0435" /note="similar to E. coli orf, hypothetical protein (AAC73529.1); Blastp hit to AAC73529.1 (169 aa), 90% identity in aa 1 - 169" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459430.3" /db_xref="GeneID:1251954" /translation="MKGEEKMPSFDIVSEVDLQEARNGVDNAVREVESRFDFRGVEAT IELNDANKTIKVLSESDFQVNQLLDILRAKLLKRGIEGASLDVPDEFVHSGKTWYVEA KLKQGIESAVQKKIVKLIKDSKLKVQAQIQGEEIRVTGKSRDDLQSVMALVRGGDLGQ PFQFKNFRD" misc_feature 487818..488306 /gene="yajQ" /locus_tag="STM0435" /note="putative nucleotide-binding protein; Reviewed; Region: PRK05412" /db_xref="CDD:180061" gene complement(488356..489705) /gene="yajR" /locus_tag="STM0436" /db_xref="GeneID:1251955" CDS complement(488356..489705) /gene="yajR" /locus_tag="STM0436" /note="similar to E. coli putative transport protein (AAC73530.1); Blastp hit to AAC73530.1 (456 aa), 89% identity in aa 8 - 453" /codon_start=1 /transl_table=11 /product="putative MFS family transporter" /protein_id="NP_459431.3" /db_xref="GeneID:1251955" /translation="MTPGELRATWGLGTVFSLRMLGMFMVLPVLTTYGMALQGASEAL IGIAIGIYGLAQAIFQIPFGLLSDRIGRKPLIVGGLAVFVAGSVIAALSHSIWGIILG RALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIVTHSLGLN ALFWMIAALATLGILLTIWVVPNSTNHVLNRESGMVKGSFSKVLAEPRLLKLNFGIMC LHILLMSTFVALPGQLADAGFPAAEHWKVYLATMVIAFAAVVPFIIYAEVKRRMKQVF LFCVGLIVVAEIVLWGAGQHFWELVIGVQLFFLAFNLMEALLPSLISKESPAGYKGTA MGVYSTSQFLGVALGGSLGGWIDGTFDGQTVFLAGAVLAMVWLAVASTMKEPPYVSSL RVEIPADIVADDRLKQRLLAMKGVSEALIVAEEHSAYVKIDSKVTNRFEVEQLISKG" misc_feature complement(488554..489672) /gene="yajR" /locus_tag="STM0436" /note="Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily; Region: MFS_YajR_like; cd17472" /db_xref="CDD:341025" misc_feature complement(order(488668..488670,488677..488682, 488689..488694,488701..488703,488770..488772, 488782..488784,488794..488799,488929..488931, 488941..488943,489022..489024,489031..489039, 489046..489051,489058..489060,489265..489267, 489274..489279,489286..489288,489352..489354, 489361..489369,489373..489378,489526..489528, 489625..489627,489634..489639,489646..489651)) /gene="yajR" /locus_tag="STM0436" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:341025" gene complement(489948..490109) /locus_tag="STM0436A" /db_xref="GeneID:1251956" CDS complement(489948..490109) /locus_tag="STM0436A" /codon_start=1 /transl_table=11 /product="IS903 transposase" /protein_id="NP_446891.1" /db_xref="GeneID:1251956" /translation="MPSFQNRVPMAKQKFKITHRPATLRQRGSLTVWLDEFCYCNMEQ QRTQPEGRG" misc_feature complement(489969..>490052) /locus_tag="STM0436A" /note="exodeoxyribonuclease V subunit gamma; Region: recC; PRK11069" /db_xref="CDD:236835" gene 490250..491768 /locus_tag="STM0437" /db_xref="GeneID:1251957" regulatory 490250..490255 /regulatory_class="ribosome_binding_site" /locus_tag="STM0437" /note="putative RBS for STM0437; RegulonDB:STMS1H000782" CDS 490257..491768 /locus_tag="STM0437" /note="similar to E. coli orf, hypothetical protein (AAC73748.1); Blastp hit to AAC73748.1 (184 aa), 38% identity in aa 61 - 150, 32% identity in aa 22 - 151, 36% identity in aa 57 - 131, 38% identity in aa 123 - 175, 30-1073758628dentity in aa 105 - 164, 22% identity in aa 10 - 129" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459433.1" /db_xref="GeneID:1251957" /translation="MEIKFLSLCILAGVLFVSQVNASANNGKDDVKYAALTQKDLDAL PVEKRASVLDELGFIHEYGLSVPMNRERALQYYKQACELGGNYGCYNVKYAYQYGDGV AKDSAQANKYAKKMNLDNLLIEQEYIDKFSQEIYMAKALADTDKSQRAAFISILIHAL NNRPESDALFFSRIGFNQEKTFRLATLWSQDGDPQMDYQMGRLTLNDFSGRYADEPYQ ARPASLKWFRAAAEKGVVEAQSLLGGIYSGGEGDEWGIKPDIQEAQKWYGQAAKQGDS DAQIALGKIYYSGATGRTDYAKALALFTQVENDGTNSRSTMPLSWMYYNGLGTAPDCD KAWSYYKKASRYVGKKVEEKIFLSKCAADIQSRKNNADALPKVTLKKERIFSRGITAK PKECALIFQIGTDKIRNMANLHITLELKNADGMATEETLMIPPFGLNTLGIDMQNHDV DPLVTPYDLPLYTQDFCHGIGDIHFTLKSATATINGKNVDLLKADSVRFLDKE" misc_feature 490419..490508 /locus_tag="STM0437" /note="Sel1-like repeats; Region: SEL1; smart00671" /db_xref="CDD:214772" misc_feature 490461..490550 /locus_tag="STM0437" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 490656..490856 /locus_tag="STM0437" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature <490824..491291 /locus_tag="STM0437" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature 490923..491000 /locus_tag="STM0437" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 491031..491120 /locus_tag="STM0437" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 491139..491231 /locus_tag="STM0437" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" gene 491986..493273 /locus_tag="STM0438" /db_xref="GeneID:1251958" regulatory 491986..491991 /regulatory_class="ribosome_binding_site" /locus_tag="STM0438" /note="putative RBS for STM0438; RegulonDB:STMS1H000783" CDS 491990..493273 /locus_tag="STM0438" /note="similar to E. coli orf, hypothetical protein (AAC73748.1); Blastp hit to AAC73748.1 (184 aa), 35% identity in aa 77 - 179, 33% identity in aa 56 - 171" /codon_start=1 /transl_table=11 /product="putative TPR repeat protein" /protein_id="NP_459434.1" /db_xref="GeneID:1251958" /translation="MDIPQAIKYYEQACDLDGDYGCFNAAYFYEYGIGTQKDITQAKT LAKQLREKINLSNINLDKKVSERIIGSVYSNKLEAYRDLSFRPHFIQGLSFYFYAPQS DERKLLSRIGFDSSHLARIAILWAREGDPEVAYQTAKLVSTLYFNNETKTIDIAEALK WLRISAEKGDADSQTLLGFLYEHAGLGLQPDGEKARKWYEMAAQQGNGEALYTLGRMY YSGVLVNVDYDKALYFFKKAYEKKLQEAADYLAQMYFNGQSVDVDCQQSWHYYDNSYI KKMTQRDYLDYCEKDRKRRNDFNQQLPELTLEKYAGLFGRIDNIPLCQIGFVVNTNKL IHVANLRVELILKNDAGVSDERMVAFPPLGLNTLGAEQGMGDSFKSMGYLLMKNGDLC DYHKLTFTVKSATATINGKKVDLLKTDNLHIIQNR" misc_feature 491993..492082 /locus_tag="STM0438" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature <492344..492802 /locus_tag="STM0438" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature 492449..492538 /locus_tag="STM0438" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 492560..492649 /locus_tag="STM0438" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 492668..492757 /locus_tag="STM0438" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" gene complement(493355..494254) /gene="cyoE" /locus_tag="STM0439" /db_xref="GeneID:1251959" CDS complement(493355..494245) /gene="cyoE" /locus_tag="STM0439" /EC_number="2.5.1.-" /note="similar to E. coli protoheme IX farnesyltransferase (haeme O biosynthesis) (AAC73531.1); Blastp hit to AAC73531.1 (296 aa), 95% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="protohaeme IX farnesyltransferase (haeme O biosynthesis)" /protein_id="NP_459435.1" /db_xref="GeneID:1251959" /translation="MMFKQYLQVTKPGIIFGNLISVIGGFLLASKGSIDYPLFIYTLV GVSLVVASGCVFNNYIDRDIDRKMERTKNRVLVKGLISPGVSLVYATLLGIAGFMLLW FGANPLACWLGVMGFVVYVGVYSLYMKRHSVYGTLIGSLSGAAPPVIGYCAVTGDFDS GAAILLAIFSLWQMPHSYAIAIFRFKDYQAANIPVLPVVKGISVAKNHITLYIIAFAV ATLMLTLGGYAGYKYLVVAAAVSVWWLGMALRGYKVEDDKVWARKLFGFSIIAITALS IMMSVDFMVPNSQNLLTYVW" misc_feature complement(493388..494245) /gene="cyoE" /locus_tag="STM0439" /note="protoheme IX farnesyltransferase; Provisional; Region: PRK04375" /db_xref="CDD:235293" regulatory complement(494249..494254) /regulatory_class="ribosome_binding_site" /gene="cyoE" /locus_tag="STM0439" /note="putative RBS for cyoE; RegulonDB:STMS1H000784" gene complement(494257..494600) /gene="cyoD" /locus_tag="STM0440" /db_xref="GeneID:1251960" CDS complement(494257..494586) /gene="cyoD" /locus_tag="STM0440" /note="similar to E. coli cytochrome o ubiquinol oxidase subunit IV (AAC73532.1); Blastp hit to AAC73532.1 (109 aa), 93% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit IV" /protein_id="NP_459436.1" /db_xref="GeneID:1251960" /translation="MSHSTESGGASHGSVKTYMTGFILSVILTVIPFWMVMTGAASPA VILGSILAMAVVQILVHLVCFLHMNTKSDEGWNMTAFIFTVLIIAILVVGSIWIMWNL NYNMMMH" misc_feature complement(494260..494586) /gene="cyoD" /locus_tag="STM0440" /note="cytochrome o ubiquinol oxidase subunit IV; Provisional; Region: PRK10582" /db_xref="CDD:182568" gene complement(494586..495212) /gene="cyoC" /locus_tag="STM0441" /db_xref="GeneID:1251961" CDS complement(494586..495200) /gene="cyoC" /locus_tag="STM0441" /EC_number="1.10.3.-" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome o ubiquinol oxidase subunit III (AAC73533.1); Blastp hit to AAC73533.1 (204 aa), 96% identity in aa 1 - 204" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit III" /protein_id="NP_459437.1" /db_xref="GeneID:1251961" /translation="MATDTLTHATAHAHEHGHHDAGQNKIFGFWVYLMSDCILFSILF ATYAVLVNGTAGGPTGKDIFELPFVLVETFLLLFSSITYGMAAIAMHKNNKSQVISWL ALTFLFGAGFIGMELYEFHHLIVNGMGPDRSGFLSAFFALVGTHGLHVTSGLIWMAVL MVQVARRGLTSTNRTRIMCLSLFWHFLDVIWICVFTVVYLMGAM" misc_feature complement(494589..495200) /gene="cyoC" /locus_tag="STM0441" /note="cytochrome o ubiquinol oxidase subunit III; Provisional; Region: PRK10663" /db_xref="CDD:182628" misc_feature complement(order(495063..495065,495072..495077, 495084..495089,495108..495110,495117..495119, 495129..495134)) /gene="cyoC" /locus_tag="STM0441" /note="Subunit I/III interface [polypeptide binding]; other site" /db_xref="CDD:239214" misc_feature complement(order(494646..494648,494667..494669, 494952..494957,494967..494969,494976..494978, 495087..495089,495111..495113)) /gene="cyoC" /locus_tag="STM0441" /note="Subunit III/IV interface [polypeptide binding]; other site" /db_xref="CDD:239214" regulatory complement(494595..494600) /regulatory_class="ribosome_binding_site" /gene="cyoD" /locus_tag="STM0440" /note="putative RBS for cyoD; RegulonDB:STMS1H000785" gene complement(495190..497193) /gene="cyoB" /locus_tag="STM0442" /db_xref="GeneID:1251962" CDS complement(495190..497181) /gene="cyoB" /locus_tag="STM0442" /EC_number="1.10.3.-" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome o ubiquinol oxidase subunit I (AAC73534.1); Blastp hit to AAC73534.1 (663 aa), 95% identity in aa 1 - 663" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit I" /protein_id="NP_459438.1" /db_xref="GeneID:1251962" /translation="MFGKLSLDAVPFHEPIVMVTIAAIIVGGLAILAAITYFGKWTYL WKEWLTSVDHKRLGIMYIIVAIVMLLRGFADAIMMRSQQALASAGEAGFLPPHHYDQI FTAHGVIMIFFVAMPFVIGLMNLVVPLQIGARDVAFPFLNNLSFWFTVVGVILVNLSL GVGEFAQTGWLAYPPLSGIEYSPSVGVDYWIWALQLSGIGTTLTGINFFVTILKMRAP GMTMFKMPVFTWASLCANVLIIASFPILTVTVALLTLDRYLGTHFFTNDMGGNMMMYI NLIWAWGHPEVYILILPVFGVFSEIAATFSRKRLFGYTSLVWATVCITVLSFIVWLHH FFTMGAGANVNAFFGITTMIIAIPTGVKIFNWLFTMYQGRIVFHSAMMWTIGFIVTFS VGGMTGVLLAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWPKAFGFKLNE TWGKRAFWFWIIGFFVAFMPLYVLGFMGMTRRLSQQIDPQFHTMLMVAAAGAALIALG ILCQLIQIFVSIRDRDQNRDLTGDPWGGRTLEWSTSSPPPFYNFAVVPHVHERDAFWE MKEKGEAYQQPGQYEEIHMPKNSGAGIVIAAFATVFGFAMIWHIWWLAIVGFAGMIIS WIVKSFDEDVDYYVPVPEVEKLENQHFDEITKAGLKNGN" misc_feature complement(495193..497181) /gene="cyoB" /locus_tag="STM0442" /note="cytochrome o ubiquinol oxidase subunit I; Provisional; Region: PRK15017" /db_xref="CDD:184978" misc_feature complement(order(496549..496551,496561..496563, 496579..496584,496747..496749,496756..496758, 496777..496779,496807..496809,496999..497001)) /gene="cyoB" /locus_tag="STM0442" /note="D-pathway [active]" /db_xref="CDD:238832" misc_feature complement(order(496873..496881,496888..496890, 496945..496950,496957..496959,496969..496971)) /gene="cyoB" /locus_tag="STM0442" /note="Putative ubiquinol binding site [chemical binding]; other site" /db_xref="CDD:238832" misc_feature complement(order(495667..495669,495781..495783, 495907..495909,495919..495921,496864..496866)) /gene="cyoB" /locus_tag="STM0442" /note="Low-spin heme (heme b) binding site [chemical binding]; other site" /db_xref="CDD:238832" misc_feature complement(order(495739..495741,495946..495951, 495961..495963,496351..496356,496369..496371)) /gene="cyoB" /locus_tag="STM0442" /note="Putative water exit pathway; other site" /db_xref="CDD:238832" misc_feature complement(order(495925..495927,496180..496185, 496330..496332)) /gene="cyoB" /locus_tag="STM0442" /note="Binuclear center (heme o3/CuB) [ion binding]; other site" /db_xref="CDD:238832" misc_feature complement(order(496096..496098,496105..496107, 496180..496185,496285..496287,496318..496320, 496330..496332)) /gene="cyoB" /locus_tag="STM0442" /note="K-pathway [active]" /db_xref="CDD:238832" misc_feature complement(order(495736..495741,495946..495951, 496180..496182)) /gene="cyoB" /locus_tag="STM0442" /note="Putative proton exit pathway; other site" /db_xref="CDD:238832" regulatory complement(495207..495212) /regulatory_class="ribosome_binding_site" /gene="cyoC" /locus_tag="STM0441" /note="putative RBS for cyoC; RegulonDB:STMS1H000786" regulatory complement(497188..497193) /regulatory_class="ribosome_binding_site" /gene="cyoB" /locus_tag="STM0442" /note="putative RBS for cyoB; RegulonDB:STMS1H000787" gene complement(497192..498229) /gene="cyoA" /locus_tag="STM0443" /db_xref="GeneID:1251963" CDS complement(497192..498148) /gene="cyoA" /locus_tag="STM0443" /EC_number="1.10.3.-" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome o ubiquinol oxidase subunit II (AAC73535.1); Blastp hit to AAC73535.1 (315 aa), 95% identity in aa 1 - 315" /codon_start=1 /transl_table=11 /product="cytochrome o ubiquinol oxidase subunit II" /protein_id="NP_459439.1" /db_xref="GeneID:1251963" /translation="MRLRKYNKSLGWLSLIAGTALLSGCNSALLDPKGQIGLEQRSLI LTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWSHSNKVEAVVWTVPILIIIF LAVLTWKTTHALEPSKPLAHDEKPITIEVVSMDWKWFFIYPEQGIATVNEIAFPANTP VYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISASYSGPGFSGM KFKAIATKDRAEFDQWVAKAKQSPNTMNDMAAFEKVAMPSEYNKVEYFSSVKPDLFKD VINKFMGHGKSMDMTQPEGEHSSHEGMEGMDMSHAESANSKG" misc_feature complement(497204..498148) /gene="cyoA" /locus_tag="STM0443" /note="cytochrome o ubiquinol oxidase subunit II; Provisional; Region: PRK10525" /db_xref="CDD:182518" regulatory complement(498162..498167) /regulatory_class="ribosome_binding_site" /gene="cyoA" /locus_tag="STM0443" /note="putative RBS for cyoA; RegulonDB:STMS1H000788" regulatory complement(498205..498213) /regulatory_class="minus_10_signal" /gene="cyoA" /locus_tag="STM0443" /note="putative -10_signal for cyoA; RegulonDB:STMLTH004674" regulatory complement(498221..498229) /regulatory_class="minus_35_signal" /gene="cyoA" /locus_tag="STM0443" /note="putative -35_signal for cyoA; RegulonDB:STMLTH004674" protein_bind complement(498365..498427) /note="putative binding site for ArcA, RegulonDB: STMS1H000013" /bound_moiety="ArcA" gene complement(498601..500094) /gene="ampG" /locus_tag="STM0444" /db_xref="GeneID:1251964" CDS complement(498601..500076) /gene="ampG" /locus_tag="STM0444" /note="similar to E. coli regulates beta-lactamase synthesis (AAC73536.1); Blastp hit to AAC73536.1 (491 aa), 91% identity in aa 1 - 490" /codon_start=1 /transl_table=11 /product="MFS family, muropeptide transporter" /protein_id="NP_459440.1" /db_xref="GeneID:1251964" /translation="MSSQYLRIFQQPRSAILLILGFASGLPLALTSGTLQAWMTVENI DLKTIGFFSLVGQAYVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLAAIAAMGFLE PGTQLRWMAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLGMLVSG GLALWLADRWLGWQGMYWLMAALLIPCIIATLLAPEPTDTIPSPKSLEQAVVAPLRDF FGRNNAWLILLLIVLYKLGDAFAMSLTTTFLIRGVGFDAGEVGVVNKTLGLLATIVGA LYGGILMQRLSLFRALLIFGILQGASNAGYWLLSITDKNMFSMGAAVFFENLCGGMGT AAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVVAA VPGLLLLLVCRQTLEYSWQSERFIPRTQYRGAYNFALSILLAGVALLAVWVLLLTMNA VDYTNFSFLPELLETAVVVAVCGIVFGGLLDYLALRKTRLL" misc_feature complement(498607..500076) /gene="ampG" /locus_tag="STM0444" /note="muropeptide MFS transporter AmpG; Region: ampG; PRK11010" /db_xref="CDD:182898" misc_feature complement(order(498970..498972,498979..498984, 498991..498996,499003..499005,499051..499053, 499063..499065,499075..499080,499249..499251, 499261..499263,499348..499350,499357..499365, 499372..499377,499384..499386,499621..499623, 499630..499635,499642..499644,499690..499692, 499699..499707,499711..499716,499891..499893, 499981..499983,499990..499995,500002..500007)) /gene="ampG" /locus_tag="STM0444" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:341039" regulatory complement(500089..500094) /regulatory_class="ribosome_binding_site" /gene="ampG" /locus_tag="STM0444" /note="putative RBS for ampG; RegulonDB:STMS1H000789" gene complement(500120..500760) /gene="yajG" /locus_tag="STM0445" /db_xref="GeneID:1251965" CDS complement(500120..500752) /gene="yajG" /locus_tag="STM0445" /note="similar to E. coli putative polymerase/proteinase (AAC73537.1); Blastp hit to AAC73537.1 (226 aa), 85% identity in aa 20 - 226" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_459441.3" /db_xref="GeneID:1251965" /translation="MMAGIFTYHVLSVIESLNMLKKLLFPLVALFMLAGCATPPTTID VAPKITLPQQDPSLMGVTVSITGADQRQDQALAKVTRNNQLVTLTASRDLRFLLQEVL EKQMTARGYMIGPNGAVNLQIIVNQLYADVSQGSVRYNIATKADIAIIATAANGSKMT KNYRANYSIEGAFQASNQNIADAVNSVLTDTIADMSQDTSIHDFIKQNAR" misc_feature complement(500123..500698) /gene="yajG" /locus_tag="STM0445" /note="hypothetical protein; Provisional; Region: PRK11627" /db_xref="CDD:183242" regulatory complement(500755..500760) /regulatory_class="ribosome_binding_site" /gene="yajG" /locus_tag="STM0445" /note="putative RBS for yajG; RegulonDB:STMS1H000790" gene 500990..501319 /gene="bolA" /locus_tag="STM0446" /db_xref="GeneID:1251966" regulatory 500990..500995 /regulatory_class="ribosome_binding_site" /gene="bolA" /locus_tag="STM0446" /note="putative RBS for bolA; RegulonDB:STMS1H000791" CDS 501002..501319 /gene="bolA" /locus_tag="STM0446" /note="similar to E. coli possible regulator of murein genes (AAC73538.1); Blastp hit to AAC73538.1 (116 aa), 92% identity in aa 12 - 116" /codon_start=1 /transl_table=11 /product="morphogene; putative regulator of murein genes (BolA family)" /protein_id="NP_459442.1" /db_xref="GeneID:1251966" /translation="MMIREQIEEKLRTAFDPVFLEVVDESYRHNVPAGSESHFKVVLV SDRFTGERFLNRHRMIYGTLTAELSTTVHALALHTYTLKEWEGLQDTIFASPPCRGAG SIA" misc_feature 501002..501316 /gene="bolA" /locus_tag="STM0446" /note="transcriptional regulator BolA; Provisional; Region: PRK11628" /db_xref="CDD:183243" gene 501655..502964 /gene="tig" /locus_tag="STM0447" /db_xref="GeneID:1251967" regulatory 501655..501660 /regulatory_class="ribosome_binding_site" /gene="tig" /locus_tag="STM0447" /note="putative RBS for tig; RegulonDB:STMS1H000792" CDS 501666..502964 /gene="tig" /locus_tag="STM0447" /note="trigger factor; a molecular chaperone involved in cell division; similar to E. coli trigger factor; a molecular chaperone involved in cell division (AAC73539.1); Blastp hit to AAC73539.1 (432 aa), 95% identity in aa 1 - 432" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis/trans isomerase" /protein_id="NP_459443.1" /db_xref="GeneID:1251967" /translation="MQVSVETTQGLGRRVTITIAADSIETAVKSELVNVAKKVRIDGF RKGKVPMNIVAQRYGASVRQDVLGDLMSRNFVDAIIKEKINPAGAPNYVPGEYKVGED FTYSVEFEVYPEVELTGLESIEVEKPVVEVTDADVDVMLDTLRKQQATWKEKDGAADA EDRVTIDFTGSVDGEEFEGGKATDFVLAMGQGRMIPGFEDGVKGHKAGEEFTIDVTFP EEYHAENLKGKAAKFVINLKKVEERELPELTEEFIKRFGVEDGSVAGLRAEVRKNMER ELKGAVRNRVKSQAIEGLVKANDIDVPSALIDSEIDVLRRQAAQRFGGNEKQALELPR ELFEEQAKRRVVVGLLLGEVIRTNELKADEERVKGLIEEMASAYEDPKEVIEFYSKNK ELMDNMRNVALEEQAVEAVLAKAKVSEKATSFNELMNQQA" misc_feature 501666..502928 /gene="tig" /locus_tag="STM0447" /note="FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]; Region: Tig; COG0544" /db_xref="CDD:440310" gene 503199..503834 /gene="clpP" /locus_tag="STM0448" /db_xref="GeneID:1251968" regulatory 503199..503204 /regulatory_class="ribosome_binding_site" /gene="clpP" /locus_tag="STM0448" /note="putative RBS for clpP; RegulonDB:STMS1H000793" CDS 503211..503834 /gene="clpP" /locus_tag="STM0448" /EC_number="3.4.21.92" /note="heat shock protein F21.5; similar to E. coli ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 (AAC73540.1); Blastp hit to AAC73540.1 (207 aa), 99% identity in aa 1 - 207" /codon_start=1 /transl_table=11 /product="proteolytic subunit of clpA-clpP ATP-dependent serine protease" /protein_id="NP_459444.1" /db_xref="GeneID:1251968" /translation="MSYSGERDNLAPHMALVPMVIEQTSRGERSFDIYSRLLKERVIF LTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVS TICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVK GRMNELMAHHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN" misc_feature 503244..503831 /gene="clpP" /locus_tag="STM0448" /note="ATP-dependent Clp protease proteolytic subunit; Reviewed; Region: clpP; PRK00277" /db_xref="CDD:178955" misc_feature order(503340..503342,503346..503348,503373..503378, 503385..503390,503397..503399,503442..503444, 503463..503465,503475..503477,503484..503486, 503493..503498,503508..503510,503532..503534, 503598..503600,503604..503606,503622..503633, 503673..503675,503682..503684,503688..503690, 503694..503696,503763..503765,503769..503771) /gene="clpP" /locus_tag="STM0448" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132928" misc_feature order(503541..503543,503616..503618,503763..503765) /gene="clpP" /locus_tag="STM0448" /note="active site residues [active]" /db_xref="CDD:132928" gene 504073..505357 /gene="clpX" /locus_tag="STM0449" /db_xref="GeneID:1251969" regulatory 504073..504078 /regulatory_class="ribosome_binding_site" /gene="clpX" /locus_tag="STM0449" /note="putative RBS for clpX; RegulonDB:STMS1H000794" CDS 504086..505357 /gene="clpX" /locus_tag="STM0449" /note="similar to E. coli ATP-dependent specificity component of clpP serine protease, chaperone (AAC73541.1); Blastp hit to AAC73541.1 (424 aa), 98% identity in aa 1 - 424" /codon_start=1 /transl_table=11 /product="specificity component of clpA-clpP ATP-dependent serine protease, chaperone" /protein_id="NP_459445.1" /db_xref="GeneID:1251969" /translation="MTDKRKDGSGKLLYCSFCGKSQHEVRKLIAGPSVYICDECVDLC NDIIREEIKEVAPHRERSALPTPHEIRTHLDDYVIGQEQAKKVLAVAVYNHYKRLRNG DTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVEN IIQKLLQKCDYDVQKAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGT VAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVIANRVETGSGIGFGATVKA KSDKASEGELLSQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALT KQYQALFNLEGVDLEFRDEALDAIARKAMARKTGARGLRSIVEAALLDTMYDLPSMED VEKVVIDESVIAGQSKPLLIYGKPEAQASGE" misc_feature 504086..505324 /gene="clpX" /locus_tag="STM0449" /note="ATP-dependent protease Clp, ATPase subunit ClpX [Posttranslational modification, protein turnover, chaperones]; Region: ClpX; COG1219" /db_xref="CDD:440832" gene 505532..507897 /gene="lon" /locus_tag="STM0450" /db_xref="GeneID:1251970" regulatory 505532..505537 /regulatory_class="ribosome_binding_site" /gene="lon" /locus_tag="STM0450" /note="putative RBS for lon; RegulonDB:STMS1H000795" CDS 505543..507897 /gene="lon" /locus_tag="STM0450" /EC_number="3.4.21.53" /note="ATP-dependent protease la; cleaves RcsA and SulA; heat shock k-protein (DNA binding activity); similar to E. coli DNA-binding, ATP-dependent protease La; heat shock K-protein (AAC73542.1); Blastp hit to AAC73542.1 (784 aa), 99% identity in aa 1 - 784" /codon_start=1 /transl_table=11 /product="DNA-binding protein" /protein_id="NP_459446.1" /db_xref="GeneID:1251970" /translation="MNPERSERIEIPVLPLRDVVVYPHMVIPLFVGREKSIRCLEAAM DHDKKIMLVAQKEASTDEPGVNDLFTVGTVASILQMLKLPDGTVKVLVEGLQRARISA LSDNGEHFSAKAEYLDSPAIDEREQEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSID DPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMESEIDLLQVEKRIRNRVK KQMEKSQREYYLNEQMKAIQKELGEMDDAPDENEALKRKIDAAKMPKEAKEKAEAELQ KLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLRQAQEILDTDHYGLERVKDRI LEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYIRMALGGVRDEAEIR GHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNV AFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLP KQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLK HIEINGDNLHDYLGVQRFDYGRADSENRVGQVTGLAWTEVGGDLLTIETACVPGKGKL TYTGSLGEVMQESIQAALTVVRARAEKLGINPDFYEKRDIHVHVPEGATPKDGPSAGI AMCTALVSCLTGNPVRADVAMTGEITLRGQVLPIGGLKEKLLAAHRGGIKTVLIPFEN KRDLEEIPDNVIADLDIHPVKRIEEVLTLALQNEPSGMQVVTAK" misc_feature 505543..507894 /gene="lon" /locus_tag="STM0450" /note="DNA-binding ATP-dependent protease La; Provisional; Region: PRK10787" /db_xref="CDD:182730" gene 508058..508378 /gene="hupB" /locus_tag="STM0451" /db_xref="GeneID:1251971" regulatory 508058..508066 /regulatory_class="minus_35_signal" /gene="hupB" /locus_tag="STM0451" /note="putative -35_signal for hupB; RegulonDB:STMLTH004679" regulatory 508085..508093 /regulatory_class="minus_10_signal" /gene="hupB" /locus_tag="STM0451" /note="putative -10_signal for hupB; RegulonDB:STMLTH004679" regulatory 508093..508098 /regulatory_class="ribosome_binding_site" /gene="hupB" /locus_tag="STM0451" /note="putative RBS for hupB; RegulonDB:STMS1H000796" CDS 508106..508378 /gene="hupB" /locus_tag="STM0451" /note="DNA-binding protein HU-beta (NS1) (HU-1). (SW:DBHB_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding protein HU-beta, NS1 (HU-1)" /protein_id="NP_459447.1" /db_xref="GeneID:1251971" /translation="MNKSQLIEKIAAGADISKAAAGRALDAIIASVTESLKEGDDVAL VGFGTFAVKERAARTGRNPQTGKEITIAAAKVPSFRAGKALKDAVN" misc_feature 508106..508375 /gene="hupB" /locus_tag="STM0451" /note="DNA sequence specific (IHF) and non-specific (HU) domains; Region: HU_IHF; cl00257" /db_xref="CDD:444792" misc_feature order(508121..508123,508130..508135,508142..508144, 508169..508180,508184..508192,508196..508204, 508208..508213,508223..508237,508244..508246, 508328..508336,508340..508342,508346..508348, 508358..508363) /gene="hupB" /locus_tag="STM0451" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:259853" misc_feature order(508262..508264,508268..508273,508277..508279, 508283..508294,508307..508312,508316..508318) /gene="hupB" /locus_tag="STM0451" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:259853" gene 508651..510540 /gene="cypD" /locus_tag="STM0452" /db_xref="GeneID:1251972" regulatory 508651..508656 /regulatory_class="ribosome_binding_site" /gene="cypD" /locus_tag="STM0452" /note="putative RBS for cypD; RegulonDB:STMS1H000797" CDS 508669..510540 /gene="cypD" /locus_tag="STM0452" /EC_number="5.2.1.8" /note="similar to E. coli putative protease maturation protein (AAC73544.1); Blastp hit to AAC73544.1 (623 aa), 88% identity in aa 1 - 623" /codon_start=1 /transl_table=11 /product="peptidyl prolyl isomerase" /protein_id="NP_459448.1" /db_xref="GeneID:1251972" /translation="MMDSLRTAANSLVLKIIFVIIIVSFILTGVSGYLIGGSNNYAAK VNGQEISRAQFENAFNNERNRMQQQLGDRYSELAANEGYMKSLRQQVLNRLIDEALLD QYSRELKLGISDEQVKQAIFATPAFQVDGKFDNNRYNAIVNQMGMTADQYAQALRNQL TTQQLINGVAGTDFMLKGETDELAALVSQQRVVREAVIDVNALAAKQQVTDQEVSSYY DQNKVRFMTPEQFRVSYIKLDAATMQAPVSDADIQAYYDQHVDQFTQPERIRYSIIQT KTEDDAKAVLDALNKGEDFATLAKEKSTDIISARNGGDMGWLEESATVPELKNAGLKE KGQISGVIKSSVGFLVARLDDIQPAKVKPLSEVRDDIAAKVKQEKALDAYYALQQKVS DAASNDNESLAGAEQVAGVKAVETGWFSRDTLPEELNFKPVADAIFNGGLVGENGTPG PNSDIITVDGDRAFVVRVSEHKPEAVKPLAEVKEQVTALVKHNKAEQQAKLDAEKLLV ELKAGKGAEAMKAAGLSFGEPKTLSRTSQDPVSQAAFALSLPTKDKPVYGVANDMQGN VVLLAFDEVKAGAMPEAQKKAMVQGITQNNAQIVFEALMSNLRKEAKIKIGDALEQQ" misc_feature 508669..510525 /gene="cypD" /locus_tag="STM0452" /note="periplasmic folding chaperone; Provisional; Region: PRK10788" /db_xref="CDD:182731" gene 510676..511064 /gene="ybaV" /locus_tag="STM0453" /db_xref="GeneID:1251973" regulatory 510676..510681 /regulatory_class="ribosome_binding_site" /gene="ybaV" /locus_tag="STM0453" /note="putative RBS for ybaV; RegulonDB:STMS1H000798" CDS 510690..511064 /gene="ybaV" /locus_tag="STM0453" /note="similar to E. coli orf, hypothetical protein (AAC73545.1); Blastp hit to AAC73545.1 (123 aa), 83% identity in aa 1 - 123" /codon_start=1 /transl_table=11 /product="putative DNA uptake protein and related DNA-binding proteins" /protein_id="NP_459449.1" /db_xref="GeneID:1251973" /translation="MKHGIKALLITLSLTCAGMAHSALAATPVAKNAAVETKADTPSS SSAKAALPAKASDDEGTRVSINTASAEDLARVMNGVGLKKAQAIVSYREEYGPFKTVD DLKQVPGMGSALVERNLAVLTL" misc_feature 510855..511061 /gene="ybaV" /locus_tag="STM0453" /note="competence protein ComEA helix-hairpin-helix repeat region; Region: TIGR00426" /db_xref="CDD:129520" gene 511154..511566 /gene="ybaW" /locus_tag="STM0454" /db_xref="GeneID:1251974" regulatory 511154..511159 /regulatory_class="ribosome_binding_site" /gene="ybaW" /locus_tag="STM0454" /note="putative RBS for ybaW; RegulonDB:STMS1H000799" CDS 511168..511566 /gene="ybaW" /locus_tag="STM0454" /note="similar to E. coli orf, hypothetical protein (AAC73546.1); Blastp hit to AAC73546.1 (132 aa), 94% identity in aa 1 - 132" /codon_start=1 /transl_table=11 /product="putative esterase" /protein_id="NP_459450.1" /db_xref="GeneID:1251974" /translation="MQTQIKVRGYHLDVYQHVNNARYLEFLEEARWDGLENSDSFQWM TARNIAFVVVNININYRRPAVLSDLLTVTSQVQQLNGKSGVLSQTITLEPEGQVVADA LITFVCIDLKTQKALPLEGELREKLEQMVQ" misc_feature 511180..511527 /gene="ybaW" /locus_tag="STM0454" /note="acyl-CoA thioester hydrolase, YbgC/YbaW family; Region: TIGR00051" /db_xref="CDD:129161" misc_feature order(511249..511251,511318..511320,511324..511326, 511405..511416) /gene="ybaW" /locus_tag="STM0454" /note="active site" /db_xref="CDD:238329" gene complement(511672..512377) /gene="ybaX" /locus_tag="STM0455" /db_xref="GeneID:1251975" CDS complement(511672..512367) /gene="ybaX" /locus_tag="STM0455" /note="similar to E. coli orf, hypothetical protein (AAC73547.1); Blastp hit to AAC73547.1 (231 aa), 93% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="putative (aluminum) resistance protein" /protein_id="NP_459451.1" /db_xref="GeneID:1251975" /translation="MKRAVVVFSGGQDSTTCLAQARHQYDEVHCVTFDYGQRHRAEID VARALALKLGARAHKVLDVTLLNELAVSSLTRDSIPVPDYEPNADGIPNTFVPGRNIL FLTLAAIYAYQVKAEAVITGVCETDFSGYPDCRDEFVKALNHAVNLGMAKDIRFETPL MWIDKAETWALADYWGQLDLVREETLTCYNGIKGDGCGHCAACNLRANGLNHYLSNKA AVMAAMKQKTGLR" misc_feature complement(511675..512367) /gene="ybaX" /locus_tag="STM0455" /note="queuosine biosynthesis protein QueC; Provisional; Region: PRK11106" /db_xref="CDD:182967" regulatory complement(512372..512377) /regulatory_class="ribosome_binding_site" /gene="ybaX" /locus_tag="STM0455" /note="putative RBS for ybaX; RegulonDB:STMS1H000800" gene complement(512432..514142) /gene="ybaE" /locus_tag="STM0456" /db_xref="GeneID:1251976" CDS complement(512432..514132) /gene="ybaE" /locus_tag="STM0456" /note="similar to E. coli orf, hypothetical protein (AAC73548.1); Blastp hit to AAC73548.1 (566 aa), 79% identity in aa 1 - 565" /codon_start=1 /transl_table=11 /product="putative ABC transporter periplasmic binding protein" /protein_id="NP_459452.1" /db_xref="GeneID:1251976" /translation="MRLLNRLNQYQRLWQPSAGETQHVTVSELAERCFCSERHLRTLL RQAQQAGWLRWEAQSGRGKRGRLQFLVTPESLRTAMMEQALEKGQQLNVLELAQLAPG ELRAMLQPFMGGQWQNDTPTLRIPYYRPLDPLQPGFLPGRAEQHLAGQVFSGLTRFDR DSQYPCGDLAHHWEVSADGLRWDFYIRSTLHWHNGDAVDTAQLHERLERLLTLPALSK LFISVARIEVTHPQCLTFLLHRPDYWLAHRLASYCSGLAHPDLPLIGTGPFRLALFTP ELVRLESHDHYHLSHPLLKAIEFWITPQLFAQDLGTSCRHPVQIAIGKPEELATLSQV SSGISLGFCYLTLKKGSRLNVQQARRLIHIIHHTSLLKTLPVDENLIMPSQGLLPGWT IPQWQDVDETPLPKKLTLAYHLPVELHTMAEQLRHYLATLGCELTLIFHNAKNWDNCP ALAQADLMMGDRLIGEAPEYTLEQWLRCDQIWSHVLDAPAFSHLQATLDALQIQPNEK DRRAALQQVFANLMDDATLTPLFNYHYRISAPPGVNGVRLTPRGWFEFSEAWLPPPSP " misc_feature complement(512435..514132) /gene="ybaE" /locus_tag="STM0456" /note="DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a periplasmic-type solute-binding domain [Transcription]; Region: SgrR; COG4533" /db_xref="CDD:443600" regulatory complement(514137..514142) /regulatory_class="ribosome_binding_site" /gene="ybaE" /locus_tag="STM0456" /note="putative RBS for ybaE; RegulonDB:STMS1H000801" gene 514221..515051 /gene="cof" /locus_tag="STM0457" /db_xref="GeneID:1251977" regulatory 514221..514226 /regulatory_class="ribosome_binding_site" /gene="cof" /locus_tag="STM0457" /note="putative RBS for cof; RegulonDB:STMS1H000802" CDS 514233..515051 /gene="cof" /locus_tag="STM0457" /note="similar to E. coli orf, hypothetical protein (AAC73549.1); Blastp hit to AAC73549.1 (276 aa), 81% identity in aa 5 - 276" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_459453.1" /db_xref="GeneID:1251977" /translation="MARLAAFDMDGTLLMPDHHLGRETIATLARLRERDITLTFATGR HVLEMRHILGTLSLDAYLITGNGTRIHSLEGDVLHRQDLDPQVADTVMHHAWDTRASM HVFNDNGWFTGQEIPALLQAHVYSGFRYQVIDIKSIPAHQVTKICFCGDHDDLIRLRI QLNEALEERAHLCFSAVDCLEVLPLGCNKGSALAVLSNHLGLSLADCMAFGDAMNDRE MLGSVGRGLIMGNAMPQLIAALPHLSVIGHCGNQAVSHFLTHWLDNPHLPYSPE" misc_feature 514233..515048 /gene="cof" /locus_tag="STM0457" /note="HMP-PP phosphatase; Region: PRK15126" /db_xref="CDD:185080" gene complement(515101..516161) /locus_tag="STM0458" /db_xref="GeneID:1251978" CDS complement(515101..516156) /locus_tag="STM0458" /note="similar to E. coli cysteine synthase B, O-acetylserine sulfhydrolase B (AAC75474.1); Blastp hit to AAC75474.1 (303 aa), 26% identity in aa 6 - 207, 35% identity in aa 198 - 289" /codon_start=1 /transl_table=11 /product="putative cysteine synthase/cystathionine beta-synthase" /protein_id="NP_459454.1" /db_xref="GeneID:1251978" /translation="MMSSNWVKNAINEINADHQRSADTHLIRLPLSAFPGIQLYLKDE STHPTGSLKHRLARSLFLYGLCNGWIKEGTPIIEASSGSTAISEAWFARLLGLPFIAV MPACTAKRKIEQIQFYGGHCHFVESACEIYAASERLAHELNGHYMDQFTYAERATDWR GNNNIADSIFRQMRNELHPVPRFIVMSAGTGGTSATIGRYIRCQGYDTQLMVVDPENS VFLPYWQDRDASLRSPVGSKIEGIGRPRVEPSFIPDVVDEMLRVPDAASVATAHWLET QLGRKVGASTGTNMWGALQLAARMREAGETGAIVTLLCDSGDRYLDTYYHPAWVSDHI GDLTPWSAAIAKLLTGD" misc_feature complement(515188..516090) /locus_tag="STM0458" /note="Cysteine synthase [Amino acid transport and metabolism]; Region: CysK; COG0031" /db_xref="CDD:439802" regulatory complement(516156..516161) /regulatory_class="ribosome_binding_site" /locus_tag="STM0458" /note="putative RBS for STM0458; RegulonDB:STMS1H000803" gene 516258..516727 /gene="ybaO" /locus_tag="STM0459" /db_xref="GeneID:1251979" regulatory 516258..516263 /regulatory_class="ribosome_binding_site" /gene="ybaO" /locus_tag="STM0459" /note="putative RBS for ybaO; RegulonDB:STMS1H000804" CDS 516269..516727 /gene="ybaO" /locus_tag="STM0459" /note="similar to E. coli putative LRP-like transcriptional regulator (AAC73550.1); Blastp hit to AAC73550.1 (181 aa), 95% identity in aa 30 - 181" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator (AsnC family)" /protein_id="NP_459455.1" /db_xref="GeneID:1251979" /translation="MLDKIDRKLLCLLQQDCTLSLQALADAVNLTTTPCWKRLKRLED DGILLGRVALLDPEKLGLGLTAFVLIKTQHHSSEWYCRFVTVVSEMPEVLGFWRMAGE YDYLMRVQVADMKRYDDFYKRLVNSVPGLSDVTSSFAMEQIKYTTSLPIE" misc_feature 516269..516688 /gene="ybaO" /locus_tag="STM0459" /note="DNA-binding transcriptional regulator, Lrp family [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:441131" gene 516755..518540 /gene="mdlA" /locus_tag="STM0460" /db_xref="GeneID:1251980" regulatory 516755..516760 /regulatory_class="ribosome_binding_site" /gene="mdlA" /locus_tag="STM0460" /note="putative RBS for mdlA; RegulonDB:STMS1H000805" CDS 516768..518540 /gene="mdlA" /locus_tag="STM0460" /note="similar to E. coli ATP-binding component of a transport system (AAC73551.1); Blastp hit to AAC73551.1 (590 aa), 88% identity in aa 1 - 590" /codon_start=1 /transl_table=11 /product="putative ABC superfamily (atp) transporter" /protein_id="NP_459456.1" /db_xref="GeneID:1251980" /translation="MRLFAQLSWYFRREWRRYLGAVALLMLIAMLQLIPPKVVGIVVD GVTAQQFTPGRIAMWIGTIALIAVVVYLLRYVWRVLLFGASYQLAVELREDYYRQLSR QHPEFYQRHRTGDLIARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQL TLLALLPMPIMALMIKRYGDRLHDYFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDR QSSLFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAISGGSWMVVNGSLTLGE LTSFMMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGEEPVPAGRGE LTAAIREFCYPQTTHPALENVNFRLKPGQMLGICGPTGAGKSTILSLIQRHFDVTQGE IRFHDMPLTHLQLDSWRSRLAVVSQTPFLFSDSIANNIALGRPEATQEEIEQVARLAS VHEDILRLPQGYDTQVGERGVMLSGGQKQRISIARALLLNAEILLLDDALSAVDGRTE HQILHNLRQWGEGRTVIISAHRLSALTDANEIIVMQHGHVVQRGDHDQLAQQIGWYRD MYRYQQLEAALDDAPERGEEAVNA" misc_feature 516831..518537 /gene="mdlA" /locus_tag="STM0460" /note="SmdA family multidrug ABC transporter permease/ATP-binding protein; Region: PRK10789" /db_xref="CDD:182732" gene 518520..520314 /gene="mdlB" /locus_tag="STM0461" /db_xref="GeneID:1251981" regulatory 518520..518525 /regulatory_class="ribosome_binding_site" /gene="mdlA" /locus_tag="STM0460" /note="putative RBS for mdlB; RegulonDB:STMS1H000806" CDS 518533..520314 /gene="mdlB" /locus_tag="STM0461" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73552.1); Blastp hit to AAC73552.1 (593 aa), 88% identity in aa 1 - 593" /codon_start=1 /transl_table=11 /product="putative ABC superfamily (atp&membrane) transporter" /protein_id="NP_459457.1" /db_xref="GeneID:1251981" /translation="MRSFGQLWPTLKRLLAYGSPWRKPLSVAVMMLWIAAAAEVSGPL LISYFIDNMVARHHLPLGKVAGLAAAYVGLQFLAAGLHYAQSLLFNRAAVGVVQSLRT DVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAM FSLDWRMALVAILIFPAVLTVMIIYQRYSTPIVRRVRAYLADINDGFNEIINGMSVIQ QFRQQARFGERMGEASRSHYMARMQTLRLDGFLLRPLLSLFSALILCGLLMLFSFTSA GTIEVGVLYAFISYLSRLNEPLIELTTQQSMLQQAVVAGERVFELMDRPRQRYGSDDR PLQSGAIDIDHLSFAYRDDNLVLQDITLSVPSRSFVALVGHTGSGKSTLASLLMGYYP LTQGEIRLDGREIASLNHRVLRQGVAMVQQDPVVMADTFLANVTLGRDVSEAQVWQAL ETVQLADLARGLSDGLHTHLGEQGNTLSVGQKQLLALARVLVDAPQILILDEATASID SGTEQAIQQALAAIRERTTLVVIAHRLSTIVEADTILVLHRGQAVERGTHQQLLAAQG RYWQMYQLQLVGEELAASVHEEPGPAA" misc_feature 518533..520308 /gene="mdlB" /locus_tag="STM0461" /note="SmdB family multidrug efflux ABC transporter permease/ATP-binding protein; Region: PRK10790" /db_xref="CDD:182733" gene 520515..520865 /gene="glnK" /locus_tag="STM0462" /db_xref="GeneID:1251982" regulatory 520515..520520 /regulatory_class="ribosome_binding_site" /gene="glnK" /locus_tag="STM0462" /note="putative RBS for glnK; RegulonDB:STMS1H000807" CDS 520527..520865 /gene="glnK" /locus_tag="STM0462" /note="nitrogen assimilation by glutamine synthetase; regulates GlnL (NRII) and GlnE (ATase); similar to E. coli nitrogen regulatory protein P-II 2 (AAC73553.1); Blastp hit to AAC73553.1 (112 aa), 97% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="regulatory protein P-II 2" /protein_id="NP_459458.1" /db_xref="GeneID:1251982" /translation="MKLVTVIIKPFKLEDVREALSSIGIQGLTVTEVKGFGRQKGHAE LYRGAEYSVNFLPKVKIDVAIADDQLEEVIDIISKAAYTGKIGDGKIFVAELMRVIRI RTGEADEAAL" misc_feature 520527..520862 /gene="glnK" /locus_tag="STM0462" /note="P-II family nitrogen regulator; Region: PRK10665" /db_xref="CDD:182629" gene 520883..522183 /gene="amtB" /locus_tag="STM0463" /db_xref="GeneID:1251983" regulatory 520883..520888 /regulatory_class="ribosome_binding_site" /gene="amtB" /locus_tag="STM0463" /note="putative RBS for amtB; RegulonDB:STMS1H000808" CDS 520897..522183 /gene="amtB" /locus_tag="STM0463" /note="similar to E. coli probable ammonium transporter (AAC73554.1); Blastp hit to AAC73554.1 (428 aa), 92% identity in aa 1 - 428" /codon_start=1 /transl_table=11 /product="putative Amt family, ammonium transport protein" /protein_id="NP_459459.1" /db_xref="GeneID:1251983" /translation="MKIAMIKTTLASLALLPGLTIAAPAVADKADSAFMMICTALVLF MTIPGIALFYGGLIRAKNVLSMLTQVTVTFALVCILWVVYGYSLAFGEGNHFFGNADG AMLKNIALTAVTGTIYQYIHVAFQGSFACITVGLIVGALAERIRFSAVLIFVVVWFTL SYIPIAHMVWGGGLLAAHGALDFAGGTVVHINAAIAGLVGAYLIGKRVGFGKEAFKPH NLPMVFTGTAILYIGWFGFNAGSAGSANEIAALAFVNTVVATAAAILGWIIGEWTLRG KPSLLGACSGAIAGLVGVTPACGYVGVGGALVIGVIAGLAGLWGVTMLKRLLRVDDPC DVFGVHGVCGIVGCILTGVFAASSLGGVGFVDGVTMGHQVMVQLESIAITVVWSGVVA FVGYKLADILVGLRVPEEQEREGLDVNSHGENAYNA" misc_feature 520897..522180 /gene="amtB" /locus_tag="STM0463" /note="ammonium transporter AmtB; Region: PRK10666" /db_xref="CDD:182630" gene complement(522283..523156) /gene="tesB" /locus_tag="STM0464" /db_xref="GeneID:1251984" CDS complement(522283..523143) /gene="tesB" /locus_tag="STM0464" /EC_number="3.1.2.-" /note="similar to E. coli acyl-CoA thioesterase II (AAC73555.1); Blastp hit to AAC73555.1 (286 aa), 91% identity in aa 1 - 286" /codon_start=1 /transl_table=11 /product="acyl-CoA thioesterase II" /protein_id="NP_459460.1" /db_xref="GeneID:1251984" /translation="MSQTLNNLLTLLNLEKIEEGLFRGQSEDLGLRQVFGGQVVGQAL YAAKETVPEARLVHSFHSYFLRPGDSQKPIIYDVEVLRDGNSFSARRVAAIQNGKPIF YMTASFQAPEPGFEHQKTMPTVVGPEGLPSETEIAQSLAHLLPPILKEKFLCDRPLEI RPVEFHNPLKGHVAAPVRQVWIRANGTVPDDIRVHQYLLGYASDLNFLPVALQPHGIG FLEKGIQIATIDHSMWFHRPFNFNEWLLYSVESTSASSARGFVRGEFYTQDGALVAST VQEGVMRNHN" misc_feature complement(522286..523143) /gene="tesB" /locus_tag="STM0464" /note="acyl-CoA thioesterase II; Provisional; Region: PRK10526" /db_xref="CDD:182519" regulatory complement(523151..523156) /regulatory_class="ribosome_binding_site" /gene="tesB" /locus_tag="STM0464" /note="putative RBS for tesB; RegulonDB:STMS1H000809" gene 523346..523927 /gene="ybaY" /locus_tag="STM0465" /db_xref="GeneID:1251985" regulatory 523346..523351 /regulatory_class="ribosome_binding_site" /gene="ybaY" /locus_tag="STM0465" /note="putative RBS for ybaY; RegulonDB:STMS1H000810" CDS 523358..523927 /gene="ybaY" /locus_tag="STM0465" /note="similar to E. coli glycoprotein/polysaccharide metabolism (AAC73556.1); Blastp hit to AAC73556.1 (190 aa), 88% identity in aa 1 - 190" /codon_start=1 /transl_table=11 /product="glycoprotein/polysaccharide metabolism" /protein_id="NP_459461.1" /db_xref="GeneID:1251985" /translation="MKLVHIVSGLAVAISLAACADKSADIQTPAPNPNMSITANQSTI QQPNVSGTVWIRQKVALPPDAVLTVTLSDASLADAPSKVLSQKAVRTEGKQAPFSFVL PFNPSDIQPNARILLSAAITVDNKLVFITDSVKPVINNGGTKADLTLVPVQQTAVPVQ ASGGATTTVPSTSPTQVNSSSAVPAPTQY" misc_feature 523358..523819 /gene="ybaY" /locus_tag="STM0465" /note="Uncharacterized lipoprotein YbaY [Function unknown]; Region: YbaY; COG3126" /db_xref="CDD:442360" gene complement(523960..524359) /gene="ybaZ" /locus_tag="STM0466" /db_xref="GeneID:1251986" CDS complement(523960..524349) /gene="ybaZ" /locus_tag="STM0466" /note="similar to E. coli orf, hypothetical protein (AAC73557.1); Blastp hit to AAC73557.1 (129 aa), 82% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="putative methyltransferase" /protein_id="NP_459462.1" /db_xref="GeneID:1251986" /translation="MLVSCASGLSSPLIPDYPEALTQDSIMDIQDTFPQRVWQIVASI PEGFVTTYGDVARLAGSPRAARQVGGVLKRLPEGSTLPWHRVVNRHGAISLTGPDLQR QRQALLAEGVVVSGSGQIDLQRYRWVY" misc_feature complement(523969..524262) /gene="ybaZ" /locus_tag="STM0466" /note="Alkylated DNA nucleotide flippase Atl1, participates in nucleotide excision repair, Ada-like DNA-binding domain [Transcription]; Region: Atl1; COG3695" /db_xref="CDD:442910" misc_feature complement(order(524065..524067,524086..524088, 524101..524103,524125..524127,524131..524136, 524143..524145,524149..524154,524158..524160, 524167..524169,524191..524196,524248..524253)) /gene="ybaZ" /locus_tag="STM0466" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:119438" misc_feature complement(order(524020..524022,524092..524094, 524098..524103,524194..524196)) /gene="ybaZ" /locus_tag="STM0466" /note="active site" /db_xref="CDD:119438" regulatory complement(524354..524359) /regulatory_class="ribosome_binding_site" /gene="ybaZ" /locus_tag="STM0466" /note="putative RBS for ybaZ; RegulonDB:STMS1H000811" gene 524427..524542 /gene="ffs" /locus_tag="STM0467" /db_xref="GeneID:1251987" ncRNA 524427..524542 /ncRNA_class="SRP_RNA" /gene="ffs" /locus_tag="STM0467" /product="signal recognition particle, RNA component" /db_xref="GeneID:1251987" gene complement(524580..526142) /gene="ylaB" /locus_tag="STM0468" /db_xref="GeneID:1251988" CDS complement(524580..526130) /gene="ylaB" /locus_tag="STM0468" /note="similar to E. coli orf, hypothetical protein (AAC73559.1); Blastp hit to AAC73559.1 (518 aa), 67% identity in aa 3 - 518" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase domain 2" /protein_id="NP_459463.1" /db_xref="GeneID:1251988" /translation="MTTRHLVSLVTGVLILSVLFPIGLSLWLAHRQVEKRFNEELDIF SSRVALRTERVSDQAKAALTHIASFKGEPCSSAHLLAMRRVSYSFRYVQEVLYLKNSI PVCSSLEKESHIPAFPPPMKITRDGYRAWFTAQNDLGIKRYMAALGSDSYIVMIDPAS FIDVIPFGAWPIDVAIIGRERNTVVASSGNLDPAILPLIHHETPLRLENRGIQYAIHP FPEMGITIVSWAPTAPLERSWYRQAFIWLPAGIVTGLLAAAFILRILRRLQSPRHRLQ DAIDNREINVHYQPIVSLSSGKIVGAEALARWQQADGTFLSPEIFIALAEQTGLTEPL TRLIIDTVFEDMGSWLKSHPEQHISINLEASDLASETLPTLLSTLLNRSQISPSQIAL ELTEREFADPKTSAPIVARYRNAGHSIYIDDFGTGYSSLSYLQNLDVDVLKIDKSFVD ALEYKNVTPHIIEMAKTLKLKMVAEGIETARQEQWLRQHGVHYGQGWLYSKPLPATAF ILWAEQRL" misc_feature complement(524583..526130) /gene="ylaB" /locus_tag="STM0468" /note="Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal transduction mechanisms]; Region: YjcC; COG4943" /db_xref="CDD:443970" regulatory complement(526137..526142) /regulatory_class="ribosome_binding_site" /gene="ylaB" /locus_tag="STM0468" /note="putative RBS for ylaB; RegulonDB:STMS1H000812" gene 526346..526615 /gene="rpmE2" /locus_tag="STM0469" /db_xref="GeneID:1251989" regulatory 526346..526351 /regulatory_class="ribosome_binding_site" /gene="rpmE2" /locus_tag="STM0469" /note="putative RBS for rpmE2; RegulonDB:STMS1H000813" CDS 526355..526615 /gene="rpmE2" /locus_tag="STM0469" /note="similar to E. coli putative ribosomal protein (AAC73399.1); Blastp hit to AAC73399.1 (87 aa), 74% identity in aa 1 - 86" /codon_start=1 /transl_table=11 /product="putative 50S ribosomal protein L31 (second copy)" /protein_id="NP_459464.1" /db_xref="GeneID:1251989" /translation="MKPDIHPVYRTVVFHDTSANEYVKVGSTIKTEREIELDGVTYPY VTIDVSSKSHPFYTGRQKTFDSESSAARFQKRFGHFIGAKRG" misc_feature 526355..526612 /gene="rpmE2" /locus_tag="STM0469" /note="type B 50S ribosomal protein L31; Region: rpmE2; PRK01678" /db_xref="CDD:234969" gene 526616..526761 /gene="rpmJ2" /locus_tag="STM0470" /db_xref="GeneID:1251990" regulatory 526616..526621 /regulatory_class="ribosome_binding_site" /gene="rpmJ2" /locus_tag="STM0470" /note="putative RBS for rpmJ2; RegulonDB:STMS1H000814" CDS 526621..526761 /gene="rpmJ2" /locus_tag="STM0470" /codon_start=1 /transl_table=11 /product="putative 50S ribosomal protein L36 (second copy)" /protein_id="NP_459465.1" /db_xref="GeneID:1251990" /translation="MQVLNSLRNAKQRHPDCQIVKRKGRLYVICKTNPRFKAVQGRKK RR" misc_feature 526621..526743 /gene="rpmJ2" /locus_tag="STM0470" /note="50S ribosomal protein L36; Validated; Region: rpmJ; PRK00831" /db_xref="CDD:179138" gene complement(526817..527297) /gene="ylaC" /locus_tag="STM0471" /db_xref="GeneID:1251991" CDS complement(526817..527287) /gene="ylaC" /locus_tag="STM0471" /note="similar to E. coli orf, hypothetical protein (AAC73560.1); Blastp hit to AAC73560.1 (169 aa), 80% identity in aa 14 - 168" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459466.1" /db_xref="GeneID:1251991" /translation="MTEIQRLLSETIDDLNIREKRDNRPRFSISFIRKHPGLFIAMYA AWFATLAVMLQSETLVGSVWLLVVLFIAFNGFFFFDIAPRYHYNDIDVLDLRVCYNGE WYNTRFVPPTLIETILQSPQVDNEHKVQLQKMVARKGELSFYDIFTLARAEASR" misc_feature complement(526829..527287) /gene="ylaC" /locus_tag="STM0471" /note="Inner membrane protein YlaC; Region: YlaC; pfam10777" /db_xref="CDD:431490" regulatory complement(527292..527297) /regulatory_class="ribosome_binding_site" /gene="ylaC" /locus_tag="STM0471" /note="putative RBS for ylaC; RegulonDB:STMS1H000815" gene complement(527404..527969) /gene="maa" /locus_tag="STM0472" /db_xref="GeneID:1251992" CDS complement(527404..527955) /gene="maa" /locus_tag="STM0472" /EC_number="2.3.1.-" /note="similar to E. coli putative transferase (AAC73561.1); Blastp hit to AAC73561.1 (183 aa), 79% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="maltose o-acetyltransferase" /protein_id="NP_459467.1" /db_xref="GeneID:1251992" /translation="MSDEKQKMIAGALYCPTDETLCQDRLRARQLIHQYNYTTPDEIN KRQAILRDLLGRCEDAYIEPSFRCDYGYNIFLGHSFYANFDCVMLDVCPIHIGDNCML APGVHIYTATHPLDAVERNSGRELGKPVTIGNNVWIGGRAVVNPGVTIGDNVVVASGA VVIKNVPPDVVVGGNPARIIKKL" misc_feature complement(527407..527955) /gene="maa" /locus_tag="STM0472" /note="maltose O-acetyltransferase; Provisional; Region: PRK10092" /db_xref="CDD:182235" misc_feature complement(order(527422..527424,527428..527439, 527464..527469,527473..527475,527482..527487, 527521..527523,527536..527541,527545..527547, 527581..527583,527587..527592,527611..527613, 527617..527619,527623..527625,527629..527631, 527647..527649,527653..527655,527683..527685, 527689..527691,527707..527709,527713..527715, 527749..527751,527881..527883,527908..527910)) /gene="maa" /locus_tag="STM0472" /note="active site" /db_xref="CDD:100047" misc_feature complement(order(527581..527583,527587..527592, 527617..527619,527623..527625,527653..527655, 527683..527685,527689..527691,527707..527709, 527713..527715,527749..527751,527881..527883, 527908..527910)) /gene="maa" /locus_tag="STM0472" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100047" misc_feature complement(order(527431..527433,527467..527469, 527479..527484,527491..527493,527497..527499, 527521..527523,527530..527538,527545..527547, 527551..527553,527572..527574,527578..527580, 527596..527601,527605..527613,527617..527619, 527629..527631,527635..527637,527641..527643, 527653..527655,527659..527661,527701..527706, 527752..527757,527761..527763,527836..527838, 527857..527859,527869..527871,527878..527880)) /gene="maa" /locus_tag="STM0472" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100047" misc_feature complement(order(527428..527430,527434..527439, 527464..527469,527482..527487,527521..527523, 527536..527541,527545..527547,527611..527613, 527617..527619,527623..527625,527629..527631)) /gene="maa" /locus_tag="STM0472" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100047" regulatory complement(527964..527969) /regulatory_class="ribosome_binding_site" /gene="maa" /locus_tag="STM0472" /note="putative RBS for maa; RegulonDB:STMS1H000816" gene complement(528134..528364) /gene="hha" /locus_tag="STM0473" /db_xref="GeneID:1251993" CDS complement(528134..528352) /gene="hha" /locus_tag="STM0473" /note="similar to E. coli haemolysin expression modulating protein (AAC73562.1); Blastp hit to AAC73562.1 (72 aa), 98% identity in aa 1 - 72" /codon_start=1 /transl_table=11 /product="hemolysin expression modulating protein (involved in environmental regulation of virulence factors)" /protein_id="NP_459468.1" /db_xref="GeneID:1251993" /translation="MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFY SAADHRLAELTMNKLYDKIPSSVWKFIR" misc_feature complement(528137..528352) /gene="hha" /locus_tag="STM0473" /note="hemolysin expression modulator Hha; Region: PRK10945" /db_xref="CDD:182856" regulatory complement(528359..528364) /regulatory_class="ribosome_binding_site" /gene="hha" /locus_tag="STM0473" /note="putative RBS for hha; RegulonDB:STMS1H000817" gene complement(528380..528767) /gene="ybaJ" /locus_tag="STM0474" /db_xref="GeneID:1251994" CDS complement(528380..528754) /gene="ybaJ" /locus_tag="STM0474" /note="similar to E. coli orf, hypothetical protein (AAC73563.1); Blastp hit to AAC73563.1 (124 aa), 95% identity in aa 1 - 124" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459469.1" /db_xref="GeneID:1251994" /translation="MDEYSPKRHDIAQLKFLCETLYHDCLANLEESNHGWVNDPTSAV NLQLNELIEHIATFALNYKIKYNEDNKLIAQIDEYLDDTFMLFSSYGINTQDLQKWRK SGNRLFRCFVNATRANPVSLSC" misc_feature complement(528389..528754) /gene="ybaJ" /locus_tag="STM0474" /note="Hha toxicity modulator TomB; Region: PRK10667" /db_xref="CDD:182631" regulatory complement(528762..528767) /regulatory_class="ribosome_binding_site" /gene="ybaJ" /locus_tag="STM0474" /note="putative RBS for ybaJ; RegulonDB:STMS1H000818" gene complement(529250..532415) /gene="acrB" /locus_tag="STM0475" /db_xref="GeneID:1251995" CDS complement(529250..532399) /gene="acrB" /locus_tag="STM0475" /note="similar to E. coli acridine efflux pump (AAC73564.1); Blastp hit to AAC73564.1 (1049 aa), 94% identity in aa 1 - 1048" /codon_start=1 /transl_table=11 /product="RND family, acridine efflux pump" /protein_id="NP_459470.1" /db_xref="GeneID:1251995" /translation="MPNFFIDRPIFAWVIAIIIMLAGGLAILKLPVAQYPTIAPPAVT ISATYPGADAKTVQDTVTQVIEQNMNGIDNLMYMSSNSDSTGTVQITLTFESGTDADI AQVQVQNKLQLAMPLLPQEVQQQGVSVEKSSSSFLMVVGVINTDGTMTQEDISDYVAA NMKDPISRTSGVGDVQLFGSQYAMRIWMNPTELTKYQLTPVDVINAIKAQNAQVAAGQ LGGTPPVKGQQLNASIIAQTRLTSTDEFGKILLKVNQDGSQVRLRDVAKIELGGENYD VIAKFNGQPASGLGIKLATGANALDTATAIRAELKKMEPFFPPGMKIVYPYDTTPFVK ISIHEVVKTLVEAIILVFLVMYLFLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINT LTMFGMVLAIGLLVDDAIVVVENVERVMTEEGLPPKEATRKSMGQIQGALVGIAMVLS AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATMLKPVAKGDHGEG KKGFFGWFNRLFDKSTHHYTDSVGNILRSTGRYLLLYLIIVVGMAYLFVRLPSSFLPD EDQGVFLTMVQLPAGATQERTQKVLDEVTDYYLNKEKANVESVFAVNGFGFAGRGQNT GIAFVSLKDWADRPGEKNKVEAITQRATAAFSQIKDAMVFAFNLPAIVELGTATGFDF ELIDQAGLGHEKLTQARNQLFGEVAKYPDLLVGVRPNGLEDTPQFKIDIDQEKAQALG VSISDINTTLGAAWGGSYVNDFIDRGRVKKVYVMSEAKYRMLPDDINDWYVRGSDGQM VPFSAFSSSRWEYGSPRLERYNGLPSMEILGQAAPGKSTGEAMAMMEELASKLPSGIG YDWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVIGALL AATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLVEATLEAVRMRL RPILMTSLAFMLGVMPLVISSGAGSGAQNAVGTGVLGGMVTATVLAIFFVPVFFVVVR RRFSRKSEDIEHSHSTEHR" misc_feature complement(529256..532399) /gene="acrB" /locus_tag="STM0475" /note="multidrug efflux RND transporter permease subunit AcrB; Region: PRK15127" /db_xref="CDD:185081" regulatory complement(532410..532415) /regulatory_class="ribosome_binding_site" /gene="acrB" /locus_tag="STM0475" /note="putative RBS for acrB; RegulonDB:STMS1H000819" gene complement(532422..533626) /gene="acrA" /locus_tag="STM0476" /db_xref="GeneID:1251996" CDS complement(532422..533615) /gene="acrA" /locus_tag="STM0476" /note="similar to E. coli acridine efflux pump (AAC73565.1); Blastp hit to AAC73565.1 (397 aa), 91% identity in aa 1 - 397" /codon_start=1 /transl_table=11 /product="acridine efflux pump" /protein_id="NP_459471.1" /db_xref="GeneID:1251996" /translation="MNKNRGLTPLAVVLMLSGSLALTGCDDKQDQQGGQQMPEVGVVT LKTEPLQITTELPGRTVAYRIAEVRPQVSGIILKRNFVEGSDIEAGVSLYQIDPATYQ ATYDSAKGDLAKAQAAANIAELTVKRYQKLLGTQYISKQEYDQALADAQQATAAVVAA KAAVETARINLAYTKVTSPISGRIGKSSVTEGALVQNGQASALATVQQLDPIYVDVTQ SSNDFLRLKQELANGSLKQENGKAKVDLVTSDGIKFPQSGTLEFSDVTVDQTTGSITL RAIFPNPDHTLLPGMFVRARLQEGTKPTALLVPQQGVTRTPRGDATVLVVGADNKVET RQIVASQAIGDKWLVTDGLKAGDRVVVSGLQKVRPGAQVKVQEITADNKQQAASGDQP AQPRS" misc_feature complement(532425..533615) /gene="acrA" /locus_tag="STM0476" /note="multidrug efflux RND transporter periplasmic adaptor subunit AcrA; Region: PRK15030" /db_xref="CDD:184990" regulatory complement(533621..533626) /regulatory_class="ribosome_binding_site" /gene="acrA" /locus_tag="STM0476" /note="putative RBS for acrA; RegulonDB:STMS1H000820" gene 533757..534410 /gene="acrR" /locus_tag="STM0477" /db_xref="GeneID:1251997" CDS 533757..534410 /gene="acrR" /locus_tag="STM0477" /note="similar to E. coli acrAB operon repressor (AAC73566.1); Blastp hit to AAC73566.1 (215 aa), 87% identity in aa 1 - 214" /codon_start=1 /transl_table=11 /product="acrAB operon repressor (TetR/AcrR family)" /protein_id="NP_459472.1" /db_xref="GeneID:1251997" /translation="MARKTKQQALETRQHILDVALRLFSQQGVSATSLAEIANAAGVT RGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQAKFPDDPLSVLREILVHILEATVT EERRRLLMEIIFHKCEFVGEMVVVQQAQRSLCLESYDRIEQTLKHCINAKMLPENLLT RRAAILMRSFISGLMENWLFAPQSFDLKKEARAYVTILLEMYQLCPTLRASTVNGSP" misc_feature 533757..534389 /gene="acrR" /locus_tag="STM0477" /note="DNA-binding transcriptional repressor AcrR; Provisional; Region: PRK10668" /db_xref="CDD:182632" gene 534529..537891 /gene="aefA" /locus_tag="STM0478" /db_xref="GeneID:1251998" CDS 534529..537891 /gene="aefA" /locus_tag="STM0478" /note="similar to E. coli putative alpha helix protein (AAC73567.1); Blastp hit to AAC73567.1 (1120 aa), 89% identity in aa 1 - 1117" /codon_start=1 /transl_table=11 /product="putative small-conductance mechanosensitive channel" /protein_id="NP_459473.1" /db_xref="GeneID:1251998" /translation="MTMLQLYKRSQHFVFITISVLIILLSCQSLAFARGQTNGDLPSK ADVQNQLDTLNKQKDLSAQDKLVQQDLIDTLATLEKIERVKEETVQLRQKVAQAPEKM RQATAALNALSDVDNDDEMRKTLSALSLRQLELRVAQVLDDLQNSQNDLAAYNSQLVS LQTQPERVQNAMYTASQQIQQIRNRLDGNNVGEAALRPSQQVLLQAQQALLNAQIDQQ RKSLEGNTVLQDTLQKQRDYVTANSNRLEHQLQLLQEAVNSKRLTLTEKTAQEAISPD ETARIQANPLVKQELDINHQLSQRLIVATENGNMLMQQNIKVKNWLDRALQSERNIKE QIAVLKGSLLLSRILYQQQQTLPSADELEDMTNRIADLRLEQFEINQQRDALFQSDAF VDKLEEGHTSEVNDEVHDALLQVVEMRRELLDQLNKQLGNQLMMAINLQVNQQQLMSV SKNLKAILTQQIFWVNSNRPMDWDWLKAFPQTLKEQFSAMKITVNWQKAWPAVFIAFL AGLPLLLIAGLIRWRLKWLKAYQQKLAAAVGSLRNDSQLNTPKAILIDLIRALPVCLI ILALGLILLTMQLNISDLLWAFSKKLAMFWLVFGLCWKVLEKEGVAIRHFGMPAQLTS HWRRQIVRISLALLPLHFWSVVAELSPLNLMDDVLGQAVIFLNLLVITLLVWPLCRES WRDKESHGIRLVTVTILSIIPVALMVLTATGYFYTTLRLAGRWIETVYLVIIWNLLYQ TVLRGLSVAARRIAWRRALARRQNLVKEGAEGAEPQEEPTIALEQINQQTLRITMLLM LALFGVMFWAIWSDLITVFSYLDSITLWHYNGSEAGAAVVKSVTMGSLLFAIIAAMVA WALIRNLPGLLEVLVLSRLNMRQGASYAITTILNYVIIAVGAMTVFGSLGVSWDKLQW LAAALSVGLGFGLQEIFGNFVSGLIILFERPVRIGDTVTIGTYSGTVSKIRIRATTIT DFDRKEVIIPNKAFVTERLINWSLSDTTTRLVIRLGVAYGSDLEKVKRVLLQAAMEHP KVMHDPEPAVFFTTFGASTLDHELRLYVRELRDRSHTVDELNRAIDRLCRENDINIAF NQLEVHLHNAKGDEVTEVKRDLNGGDLAPTAS" misc_feature 534547..537888 /gene="aefA" /locus_tag="STM0478" /note="mechanosensitive channel MscK; Region: PRK11281" /db_xref="CDD:236892" gene complement(537933..538874) /locus_tag="STM0479" /db_xref="GeneID:1251999" CDS complement(537933..538868) /locus_tag="STM0479" /note="similar to E. coli orf, hypothetical protein (AAC75365.1); Blastp hit to AAC75365.1 (296 aa), 49% identity in aa 7 - 296" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_459474.1" /db_xref="GeneID:1251999" /translation="MERLPTTPHDAVFRQMLMQKEVARDFLAIHMPEDFLAICDLDSL KLESGSFVEDNLRSRYSDILYSLHTQHGPGYVYALIEHQSKSDRLMAFRLMRYAIAAM QRHLDAGHDTLPLVVPILFYHGPESPWPYSLNWHNMFVKPDMAKALYSRDFALVDLTT MPDNQLLQHRRIAMLELLQKHIRQRDLSELLDPLITLLTQDHLTDAQLSVLINYMLKA GNAAEPGALIRQLAQGAPQYKEQLMTIAEWLEEKGRTEGLQKGLQKGLEQGLAQGREA EARAIARKMLANGLEPGLIASVTGITPEELSTLSH" misc_feature complement(538245..538850) /locus_tag="STM0479" /note="Putative transposase, YhgA-like; Region: Transposase_31; pfam04754" /db_xref="CDD:428107" misc_feature complement(<538008..>538118) /locus_tag="STM0479" /note="flagellar assembly protein FliH; Region: fliH; PRK05687" /db_xref="CDD:235562" regulatory complement(538869..538874) /regulatory_class="ribosome_binding_site" /locus_tag="STM0479" /note="putative RBS for STM0479; RegulonDB:STMS1H000821" gene complement(538938..539116) /gene="ybaM" /locus_tag="STM0480" /db_xref="GeneID:1252000" CDS complement(538938..539105) /gene="ybaM" /locus_tag="STM0480" /note="similar to E. coli orf, hypothetical protein (AAC73568.1); Blastp hit to AAC73568.1 (53 aa), 80% identity in aa 1 - 49" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459475.1" /db_xref="GeneID:1252000" /translation="MSLENAPDEVKLAVDLIVLLEENRLPARTVLRALEIVMRDYENK LKSTEDDSQTE" misc_feature complement(538965..539105) /gene="ybaM" /locus_tag="STM0480" /note="hypothetical protein; Provisional; Region: PRK11038" /db_xref="CDD:182920" regulatory complement(539111..539116) /regulatory_class="ribosome_binding_site" /gene="ybaM" /locus_tag="STM0480" /note="putative RBS for ybaM; RegulonDB:STMS1H000822" gene complement(539119..539634) /gene="priC" /locus_tag="STM0481" /db_xref="GeneID:1252001" CDS complement(539119..539634) /gene="priC" /locus_tag="STM0481" /note="similar to E. coli primosomal replication protein N'' (AAC73569.1); Blastp hit to AAC73569.1 (175 aa), 73% identity in aa 5 - 175" /codon_start=1 /transl_table=11 /product="primosomal replication protein N" /protein_id="NP_459476.1" /db_xref="GeneID:1252001" /translation="MLLQTLEERLATLRQRCAPLAQHATLSARFDRHLFRTRSTLLQG YLEEAGANLVALRQAVKHEQLPQVAWLAEHLASQLEAISRETAAWSLRQWDAAAPGLG RWQRRRIQHQEFERRLLAMTQERKIRLAQATGLVEQQTLQKEVEIYEGRLARCRHALE KIENVLARLTR" misc_feature complement(539122..539634) /gene="priC" /locus_tag="STM0481" /note="primosomal replication protein N''; Provisional; Region: PRK10093" /db_xref="CDD:182236" gene 539715..540092 /gene="ybaN" /locus_tag="STM0482" /db_xref="GeneID:1252002" CDS 539715..540092 /gene="ybaN" /locus_tag="STM0482" /note="similar to E. coli putative gene 58 (AAC73570.1); Blastp hit to AAC73570.1 (125 aa), 84% identity in aa 1 - 124" /codon_start=1 /transl_table=11 /product="putative phage gene 58" /protein_id="NP_459477.1" /db_xref="GeneID:1252002" /translation="MQRTILIIIGWLAVVLGTLGVVLPLLPTTPFILLAAWCFARSSP RFHAWLLYRSWFGGYLRHWQRYRAMPPGAKPRAIALILLTFGISLWLVNMMWVRVLLL VILACLLIFMWRIPVIDEKQQKR" misc_feature 539715..540089 /gene="ybaN" /locus_tag="STM0482" /note="DUF454 family protein; Region: PRK10527" /db_xref="CDD:182520" gene 540232..540796 /gene="apt" /locus_tag="STM0483" /db_xref="GeneID:1252003" regulatory 540232..540237 /regulatory_class="ribosome_binding_site" /gene="apt" /locus_tag="STM0483" /note="putative RBS for apt; RegulonDB:STMS1H000823" CDS 540245..540796 /gene="apt" /locus_tag="STM0483" /EC_number="2.4.2.7" /note="similar to E. coli adenine phosphoribosyltransferase (AAC73571.1); Blastp hit to AAC73571.1 (183 aa), 95% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="adenine phosphoribosyltransferase" /protein_id="NP_459478.1" /db_xref="GeneID:1252003" /translation="MTATAQQLEFLKNSIKSIQDYPKPGILFRDVTSLLEDPKAYALS IELLVERYKNAGITKVVGTEARGFLFGAPVALGLGVGFVPVRKPRKLPRETIAETYEL EYGTDQLEIHVDAIKPGDNVLVVDDLLATGGTIEATVKLIRRLGGKVTDAAFIINLFD LGGEQRLEKQGITCYSLVPFPGH" misc_feature 540260..540790 /gene="apt" /locus_tag="STM0483" /note="adenine phosphoribosyltransferase; Provisional; Region: PRK02304" /db_xref="CDD:235028" misc_feature order(540434..540436,540440..540442,540620..540628, 540632..540646,540716..540718) /gene="apt" /locus_tag="STM0483" /note="active site" /db_xref="CDD:206754" gene 540910..542838 /gene="dnaX" /locus_tag="STM0484" /db_xref="GeneID:1252004" CDS 540910..542838 /gene="dnaX" /locus_tag="STM0484" /EC_number="2.7.7.7" /note="DNA elongation factor III; DNA polymerase III subunit TAU [contains: DNA polymerase III subunit gamma]. (SW:DP3X_SALTY)" /codon_start=1 /transl_table=11 /product="DNA polymerase III, tau and gamma subunits" /protein_id="NP_459479.1" /db_xref="GeneID:1252004" /translation="MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFS GTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVE DTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQ KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDAL SLTDQAIASGDGQVSTQAVSAMLGTLDDDQALSLVEAVVDANGERVMSLINEAAARGI EWEALLVEMLSLLHRIAMVQLSPAALGSDMAAIEQRMRELARTVPPGDLQLYYQTLLI GRKELPWAPDRRMGVEMTLLRALAFHPRMPLPEPETPRQSFAPVAPTAVMTPPQLQQP SAPAPQTSPAPLPASTSQVLAARNQLQRAQGVTKTKKSEPAAASRARPVNNSALERLA SVSERVQARPAPSALETAPVKKEAYRWKATTPVVQTKEVVATPKALKKALEHEKTPEL AAKLAAEAIERDPWAAQVSQLSLPKLVEQVALNAWKEQNGNAVCLHLRSTQRHLNSSG AQQKLAQALSDLTGTTVELTIVEDDNPAVRTPLEWRQAIYEEKLAQARESIIADNNIQ TLRRFFDAELDEESIRPI" misc_feature 540910..542835 /gene="dnaX" /locus_tag="STM0484" /note="DNA polymerase III subunits gamma and tau; Validated; Region: PRK07994" /db_xref="CDD:236138" gene 542874..543213 /gene="ybaB" /locus_tag="STM0485" /db_xref="GeneID:1252005" regulatory 542874..542879 /regulatory_class="ribosome_binding_site" /gene="ybaB" /locus_tag="STM0485" /note="putative RBS for ybaB; RegulonDB:STMS1H000825" CDS 542884..543213 /gene="ybaB" /locus_tag="STM0485" /note="similar to E. coli orf, hypothetical protein (AAC73573.1); Blastp hit to AAC73573.1 (109 aa), 100% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459480.1" /db_xref="GeneID:1252005" /translation="MFGKGGLGNLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKV TINGAHNCRRVEIDPSLLEDDKEMLEDLVAAAFNDAARRIEETQKEKMASVSSGMQLP PGFKMPF" misc_feature 542899..543189 /gene="ybaB" /locus_tag="STM0485" /note="DNA-binding nucleoid-associated protein YbaB/EfbC [Transcription]; Region: YbaB; COG0718" /db_xref="CDD:440482" gene 543199..543818 /gene="recR" /locus_tag="STM0486" /db_xref="GeneID:1252006" regulatory 543199..543204 /regulatory_class="ribosome_binding_site" /gene="ybaB" /locus_tag="STM0485" /note="putative RBS for recR; RegulonDB:STMS1H000826" CDS 543213..543818 /gene="recR" /locus_tag="STM0486" /note="similar to E. coli recombination and repair (AAC73574.1); Blastp hit to AAC73574.1 (201 aa), 96% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="putative recombination protein, gap repair" /protein_id="NP_459481.1" /db_xref="GeneID:1252006" /translation="MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLA QALTRAMSEIGHCADCRTFTEQDVCNICSNPRRQENGQICVVESPADIYAIEQTGQFS GRYFVLMGHLSPLDGIGPDDIGLDRLEQRLASEKISELILATNPTVEGEATANYIAEL CAEAGVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIIF" misc_feature 543222..543800 /gene="recR" /locus_tag="STM0486" /note="Recombinational DNA repair protein RecR [Replication, recombination and repair]; Region: RecR; COG0353" /db_xref="CDD:440122" gene 543905..545803 /gene="htpG" /locus_tag="STM0487" /db_xref="GeneID:1252007" CDS 543905..545803 /gene="htpG" /locus_tag="STM0487" /note="similar to E. coli chaperone Hsp90, heat shock protein C 62.5 (AAC73575.1); Blastp hit to AAC73575.1 (624 aa), 94% identity in aa 1 - 624" /codon_start=1 /transl_table=11 /product="chaperone Hsp90, heat shock protein C 62.5" /protein_id="NP_459482.3" /db_xref="GeneID:1252007" /translation="MALLRSIHMKGQETRGFQSEVKQLLHLMIHSLYSNKEIFLRELI SNASDAADKLRFRALSNPDLYEGDGELRVRVSFDKDKRTLTIADNGVGMNRDEVIDHL GTIAKSGTKSFLESMGSDQAKDSQLIGQFGVGFYSAFIVADKVTVRTRAAGDKPENGV FWESAGEGEYTVADITKNDRGTEITLHLREGEDEFLDDWRVRSIISKYSDHIALPVEI EKREEKDGETVISWEKINKAQALWTRNKSEIKDDEYNEFYKHIAHDFTDPLTWSHNRV EGKQEYTSLLYIPSQAPWDLWNRDHKHGLKLYVQRVFIMDDAEQFMPNYLRFVRGLID SNDLPLNVSREILQDSTVTRNLRSALTKRVLQMLEKLAKDDAEKYQTFWKQFGLVLKE GPAEDHANQEAIAKLLRFASTHTDSSAQTVSLEDYVSRMKEGQEKIYYITADSYAAAK NSPHLELLRKKGIEVLLLSDRIDEWMMNYLTEFDGKAFQSVAKADESIEKLADEVDEN AKEAEKALEPFVERVKTLLGDRVKDVRLTHRLTDTPAIVTTDADEMSTQMAKLFAAAG QSVPEVKYIFELNPDHVLVKRTADTKDEAQFKEWVELLLDQALFAERGTLEDPNQFIR RMNQLLVS" misc_feature 543938..545797 /gene="htpG" /locus_tag="STM0487" /note="heat shock protein 90; Provisional; Region: PRK05218" /db_xref="CDD:235366" gene 546029..546688 /gene="adk" /locus_tag="STM0488" /db_xref="GeneID:1252008" regulatory 546029..546034 /regulatory_class="ribosome_binding_site" /gene="adk" /locus_tag="STM0488" /note="putative RBS for adk; RegulonDB:STMS1H000827" CDS 546044..546688 /gene="adk" /locus_tag="STM0488" /EC_number="2.7.4.3" /note="adenylate kinase. (SW:KAD_SALTY)" /codon_start=1 /transl_table=11 /product="adenylate kinase" /protein_id="NP_459483.1" /db_xref="GeneID:1252008" /translation="MRIILLGAPGAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSE LGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGIV VDYVLEFDVPDELIVDRIVGRRVHAASGRVYHVKFNPPKVEGKDDVTGEDLTTRKDDQ EETVRKRLVEYHQMTAPLIGYYQKEAEAGNTKYAKVDGTQAVADVRAALEKILG" misc_feature 546044..546685 /gene="adk" /locus_tag="STM0488" /note="adenylate kinase; Reviewed; Region: adk; PRK00279" /db_xref="CDD:234711" gene 546908..547879 /gene="hemH" /locus_tag="STM0489" /db_xref="GeneID:1252009" regulatory 546908..546913 /regulatory_class="ribosome_binding_site" /gene="hemH" /locus_tag="STM0489" /note="putative RBS for hemH; RegulonDB:STMS1H000828" CDS 546917..547879 /gene="hemH" /locus_tag="STM0489" /EC_number="4.99.1.1" /note="ferrochelatase. (SW:HEMZ_SALTY)" /codon_start=1 /transl_table=11 /product="ferrochelatase" /protein_id="NP_459484.1" /db_xref="GeneID:1252009" /translation="MRQTKTGILLANLGTPDAPTPEAVKRYLKQFLSDRRVVDTPRLL WWPLLRGVILPLRSPRVAKLYQSIWMDGGSPLMVYSREQQQALAARLPDTPVALGMSY GSPSLESAVDELLASDVDHIVVLPLYPQYSCSTVGAVWDELGRILARKRRIPGISFIR DYADDGAYIDALAKSARESFARHGEPDVLLLSYHGIPQRYADEGDDYPQRCRDTTREL VSALGLPPEKVMMTFQSRFGREPWLTPYTDETLKMLGEKGTGHIQVMCPGFAADCLET LEEIAEQNREIFLEAGGKKYAYIPALNATPEHIDMMLKLTAPYR" misc_feature 546929..547861 /gene="hemH" /locus_tag="STM0489" /note="Protoheme ferro-lyase (ferrochelatase) [Coenzyme transport and metabolism]; Region: HemH; COG0276" /db_xref="CDD:440045" gene complement(547876..548859) /gene="aes" /locus_tag="STM0490" /db_xref="GeneID:1252010" CDS complement(547876..548847) /gene="aes" /locus_tag="STM0490" /EC_number="3.1.1.-" /note="similar to E. coli putative lipase (AAC73578.1); Blastp hit to AAC73578.1 (319 aa), 75% identity in aa 1 - 319" /codon_start=1 /transl_table=11 /product="acetyl esterase" /protein_id="NP_459485.1" /db_xref="GeneID:1252010" /translation="MKPENKIPVLTRLSDEMTAVVNFQQPGLPPWPADGDIETQRQYY LLERRFWNADAPSMTTRTCAVPTPYGDVTTRLYSPQPTSQATLYYLHGGGFILGNLDT HDRIMRLLARYTGCTVIGIDYSLSPQARYPQAIEETVAVCSYFSQHADEYSLNVEKIG FAGDSAGAMLALASALWLRDKHIRCGNVIAILLWYGLYGLQDSVSRRLFGGAWDGLTR EDLDMYEKAYLRNDEDRESPWYCLFNNDLTRDVPPCFIASAEFDPLIDDSRLLHQTLQ AHQQPCEYKMYPGTLHAFLHYSRMMTIADDALQDGARFFMARMKTPR" misc_feature complement(547885..548838) /gene="aes" /locus_tag="STM0490" /note="acetyl esterase; Region: PRK10162" /db_xref="CDD:236660" regulatory complement(548854..548859) /regulatory_class="ribosome_binding_site" /gene="aes" /locus_tag="STM0490" /note="putative RBS for aes; RegulonDB:STMS1H000829" gene 549000..550304 /gene="gsk" /locus_tag="STM0491" /db_xref="GeneID:1252011" CDS 549000..550304 /gene="gsk" /locus_tag="STM0491" /EC_number="2.7.1.73" /note="similar to E. coli inosine-guanosine kinase (AAC73579.1); Blastp hit to AAC73579.1 (434 aa), 94% identity in aa 1 - 434" /codon_start=1 /transl_table=11 /product="inosine-guanosine kinase" /protein_id="NP_459486.1" /db_xref="GeneID:1252011" /translation="MKFPGKRKSKHYFPVNARDPLLQQIQPEQETNASWVVGIDQTLV DIEAKVDDDFITRYGLSAGHSLVIEDEVAEKLYQELTRENLITHQFAGGTIGNTMHNY SVLADDRSVLLGVMCSNIEIGSYAYRYLCNTSSRTDLNYLQAVDGPIGRCFTLIGESG ERTFAISPGHMNQLRAESIPEAVIAGASALVLTSYLVRCKPGEPMPDATMKAIEYAKK HNVPVVMTLGTKFVIADNPQWWQAFLKENVSILAMNEEEAEALTGENDPLLAADKALD WVDLVLCTAGPIGLYMAGFTEEEAKRKTQHPLLPGAIAEFNQYEFSRAMRHKDCINPL RVYSHIAPYMGGPEKIMNTNGAGDGALAALLHDITANSYHRSNVPNSSKHKFTWLTYS SLAQVCKYANRVSYQVLNQHSPRLTRGLPEREDSLEESYWDR" misc_feature 549000..550301 /gene="gsk" /locus_tag="STM0491" /note="inosine/guanosine kinase; Provisional; Region: PRK15074" /db_xref="CDD:185033" misc_feature order(549288..549290,550062..550064,550071..550073) /gene="gsk" /locus_tag="STM0491" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238573" misc_feature order(549759..549761,549849..549851,550056..550058, 550065..550070) /gene="gsk" /locus_tag="STM0491" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238573" gene complement(550353..552040) /gene="ybaL" /locus_tag="STM0492" /db_xref="GeneID:1252012" CDS complement(550353..552029) /gene="ybaL" /locus_tag="STM0492" /note="similar to E. coli putative transport protein (AAC73580.1); Blastp hit to AAC73580.1 (558 aa), 94% identity in aa 1 - 556" /codon_start=1 /transl_table=11 /product="putative CPA2 family transport protein" /protein_id="NP_459487.1" /db_xref="GeneID:1252012" /translation="MHHATPLITTIVGGLVLAFILGMIANKLRISPLVGYLLAGVLAG PFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAVAQIAVATLL GMALSAVLGWSLMTGIVFGLCLSTASTVVLLRALEERQLLDSQRGQIAIGWLIVEDLV MVLTLVLLPAVAGMVEKGDVGIASLTVDMGITIGKVVAFIAIMMLVGRRLVPWIMARS AATGSRELFTLSVLALALGIAFGAVELFDVSFALGAFFAGMVLNESELSHRAAHDTLP LRDAFAVLFFVSVGMLFDPLVLIQQPLAVLATLAIIVFGKSIAAFFLVRLFGHSPRTA LTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLEKYLA KTETLEEQTLEEAIEEEKQIPVDICNHALLVGFGRVGSLLGEKLLAAGIPLVVIETSR TRVDELRERGIRAVLGNAANEEIMNLAHLDCARWLLLTIPNGYEAGEIVASARGKSPD IEIIARAHYDDEVKYITERGANQVVMGEREIARAMLELLETPPAGEVVAS" misc_feature complement(550356..552029) /gene="ybaL" /locus_tag="STM0492" /note="putative cation:proton antiport protein; Provisional; Region: PRK10669" /db_xref="CDD:182633" regulatory complement(552035..552040) /regulatory_class="ribosome_binding_site" /gene="ybaL" /locus_tag="STM0492" /note="putative RBS for ybaL; RegulonDB:STMS1H000830" gene complement(552244..553464) /gene="fsr" /locus_tag="STM0493" /db_xref="GeneID:1252013" CDS complement(552244..553464) /gene="fsr" /locus_tag="STM0493" /note="similar to E. coli fosmidomycin resistance protein (AAC73581.1); Blastp hit to AAC73581.1 (406 aa), 93% identity in aa 1 - 405" /codon_start=1 /transl_table=11 /product="putative MFS family of transport protein" /protein_id="NP_459488.1" /db_xref="GeneID:1252013" /translation="MAMSEPTQPLAGAPAAAAKARTSFGILGAISLSHLLNDMIQSLI LAIYPLLQAEFSLTFVQIGLITLTFQLASSLLQPVVGYWTDKYPMPWSLPVGMCFTLS GLVLLAMAGSFGGVLLAAALVGTGSSVFHPESSRVARMASGGRHGLAQSIFQVGGNFG SSLGPLLAAVIIAPYGKGNVAWFVLAALLAIVVLAQISRWYAAQHRIAKGKPKAIIAN PLPRNKVVLAVSVLLLLIFSKYFYMASISSYYTFYLMQKFGLSIQNAQLHLFAFLFAV AAGTVIGGPVGDKIGRKYVIWGSILGVAPFTLVLPYATLYWTGILTVIIGFILASAFS AILVYAQELLPGRIGMVSGLFFGFAFGMGGLGAAVLGLIADHTSIYLVYKICAFLPLL GILTIFLPDNRHKA" misc_feature complement(552271..553377) /gene="fsr" /locus_tag="STM0493" /note="Fosmidomycin resistance protein of the Major Facilitator Superfamily of transporters; Region: MFS_FsR; cd17478" /db_xref="CDD:341031" misc_feature complement(order(552376..552378,552385..552390, 552397..552402,552409..552411,552454..552456, 552466..552468,552478..552483,552625..552627, 552637..552639,552721..552723,552730..552738, 552745..552750,552757..552759,552982..552984, 552991..552996,553003..553005,553060..553062, 553069..553077,553081..553086,553234..553236, 553330..553332,553339..553344,553351..553356)) /gene="fsr" /locus_tag="STM0493" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:341031" gene 553624..555289 /gene="ushA" /locus_tag="STM0494" /db_xref="GeneID:1252014" regulatory 553624..553629 /regulatory_class="ribosome_binding_site" /gene="ushA" /locus_tag="STM0494" /note="putative RBS for ushA; RegulonDB:STMS1H000831" CDS 553637..555289 /gene="ushA" /locus_tag="STM0494" /EC_number="3.1.3.5" /EC_number="3.6.1.45" /note="silent protein USHA(0) precursor. (SW:USHA_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-sugar hydrolase 5'-nucleotidase" /protein_id="NP_459489.1" /db_xref="GeneID:1252014" /translation="MKFLKRGVALALLAAFALTTQPAQAYEKDKTYKITILHTNDHHG HFWRSEYGEYGLAAQKTLVDSIRKEVAQEGGSVLLLSGGDINTGVPESDLQDAEPDFR GMNLIGYDAMAVGNHEFDNPLTVLRQQEKWAKFPFLYANIYQKSTGERLFKPWAIFTR QDIKIAVIGLTTDDTAKIGNPEYFTDIEFRKPAEEAKVVIQELNMNEKPDVIIATTHM GHYDNGDHGSNAPGDVEMARSLPAGSLAMIVGGHSQDPVCMASENKKQVNYVPGTPCA PDKQNGIWIVQAHEWGKYVGRADFEFRNGEMKMVNYQLIPVNLKKKVTWDNGKSERVL YTPEIAENPQMLSLLTPFQNKGKAQLEVKIGSVNGLLEGDRSKVRFVQTNMGRVILAA QIARTGADFGVMSGGGIRDSIEAGDITYKSVLKVQPFGNIVVYADMSGKEVVDYLTAV AQMKPDSGAYPQLANVSFVAKEGKLTDLKIKGEPVDPAKTYRMATLSFNATGGDGYPR IDNKPGYVNTGFIDAEVLKEFIQQNSPLDAAAFTPNGEVSWL" misc_feature 553637..555283 /gene="ushA" /locus_tag="STM0494" /note="bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor; Reviewed; Region: ushA; PRK09558" /db_xref="CDD:236566" gene complement(555406..555895) /gene="ybaK" /locus_tag="STM0495" /db_xref="GeneID:1252015" CDS complement(555406..555885) /gene="ybaK" /locus_tag="STM0495" /note="protein YBAK. (SW:YBAK_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459490.1" /db_xref="GeneID:1252015" /translation="MTPAVKLLEKNKIPFNIHTYDHDPNETNFGDEVVRKLGLNADQV YKTLLVAVNGDMKQLAVAVTPVAGQLDLKKVAKALGAKKVDMADPMVAQRTTGYLVGG ISPLGQKKRLPTLIDAPARTFATIYVSGGKRGLDIELAADDLAAILGAKFADIARRD" misc_feature complement(555409..555885) /gene="ybaK" /locus_tag="STM0495" /note="Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK; Region: PRK10670" /db_xref="CDD:182634" misc_feature complement(order(555499..555501,555580..555585, 555748..555750)) /gene="ybaK" /locus_tag="STM0495" /note="putative deacylase active site [active]" /db_xref="CDD:237976" regulatory complement(555890..555895) /regulatory_class="ribosome_binding_site" /gene="ybaK" /locus_tag="STM0495" /note="putative RBS for ybaK; RegulonDB:STMS1H000832" gene complement(556087..556893) /gene="ybaP" /locus_tag="STM0496" /db_xref="GeneID:1252016" CDS complement(556087..556881) /gene="ybaP" /locus_tag="STM0496" /note="similar to E. coli putative ligase (AAC73584.1); Blastp hit to AAC73584.1 (264 aa), 66% identity in aa 1 - 264" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459491.1" /db_xref="GeneID:1252016" /translation="MELLNQLKRLWRALRGTPNSWPAIDLSLPGGRHLHLVGSIHMGT RDMAPLPAKLVKKLHQADALVVEADISGNETPFSNLPKCPPLVERLSAGQLSALEKRV SELGMPLIHFDNQPLWQIAMVLQATQAQRLGLRPDYGIDYQLLQAAREMSLPVQELEG AKHQLELLCDLPDGGMALLDDTLTHWHTNARLLQVMIGWWLEQPPTSVGASLPRTFSQ PLYDVLMVKRNEAWRDALLALPPGRYVVAVGALHLYGEGNLPQILK" misc_feature complement(556090..556794) /gene="ybaP" /locus_tag="STM0496" /note="Tiki homology domain antagonizes Wnt function via cleavage of amino-terminal residues; Region: Tiki; cd14789" /db_xref="CDD:350614" regulatory complement(556888..556893) /regulatory_class="ribosome_binding_site" /gene="ybaP" /locus_tag="STM0496" /note="putative RBS for ybaP; RegulonDB:STMS1H000833" gene complement(556967..557800) /locus_tag="STM0497" /db_xref="GeneID:1252017" CDS complement(556967..557794) /locus_tag="STM0497" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459492.1" /db_xref="GeneID:1252017" /translation="MFRKAVTLLFLLSPAVSYAGLFDSTPELKCGNDNAVTAAKEWIY NEALGRLQQDYIKEPSTLFFDIPQTQYEQQLRAIPVQFSDVITQNPQAENANLRTCSA TVAMGIPQPLFKLMKDLPNTLFYISQGDGQVINNTVTWKQVNYNIQLADNNKDIVVTS VQKTDKLARSIYVMARMTVSGDSIIKKKNNSLIEIAAKKFESRDRELNQVWNSLPASA RTALKQEQRVWVTQKEQQCGKLSDAKSEAIPAEKRISIYKCQLEMTIARTAYLDGSE" misc_feature complement(556985..557209) /locus_tag="STM0497" /note="Lysozyme inhibitor LprI; Region: LprI; pfam07007" /db_xref="CDD:429244" regulatory complement(557795..557800) /regulatory_class="ribosome_binding_site" /locus_tag="STM0497" /note="putative RBS for STM0497; RegulonDB:STMS1H000834" gene complement(557948..560463) /gene="copA" /locus_tag="STM0498" /db_xref="GeneID:1252018" CDS complement(557948..560449) /gene="copA" /locus_tag="STM0498" /EC_number="7.2.2.9" /note="similar to E. coli putative ATPase (AAC73586.1); Blastp hit to AAC73586.1 (834 aa), 93% identity in aa 1 - 833" /codon_start=1 /transl_table=11 /product="putative copper-transporting ATPase" /protein_id="NP_459493.1" /db_xref="GeneID:1252018" /translation="MSQTIDLTLDGLSCGHCVKRVKESLEQRPDVELADVTVTEAHVT GTASADALIETIKQAGYGATLSHPKAKPLTESSIPSEALAAVPHELPVATADEESQQL LLSGMSCASCVTRVQHALQSVPGVTQARVNLAERTALVMGSASAADLVQAVEKAGYGA EAIEDDIKRRERQQETAIATMKRFRWQAIVALAVGIPVMVWGMIGDNMMVTDDNRSLW LAIGLITLAVMVFAGGHFYRNAWKSLLNGTATMDTLVALGTGVAWLYSMSVNLWPQWF PMEARHLYYEASAMIIGLINLGHMLEARARQRSSKALEKLLDLTPPTARVVTEDGEKS VPLADVQPGMLLRLTTGDRVPVDGEITQGEAWLDEAMLTGEPIPQQKGEGDSVHAGTV VQDGSVLFRASAVGSHTTLSRIIRMVRQAQSSKPEIGQLADKISAVFVPVVVAIALFS AAIWYFFGPAPQIVYTLVIATTVLIIACPCALGLATPMSIISGVGRAAEFGVLVRDAD ALQRASTLDTLVFDKTGTLTEGKPQVVAIKTFNGVEEAQALRLAAALEQGSSHPLAHA ILEKAGDDKLPQVNGFRTLRGLGVSGEAEGHQLLLGNQALLNEQHVATDDMTAEITAQ ASQGSTPVLLAIDGKAAALLAVRDPLRSDSIAALERLHNAGYRLVMLTGDNPTTANAI AKEAGIDEVIAGVLPDGKADAIKRLQSQGRQVAMVGDGINDAPALAQADVGIAMGGGS DVAIETAAITLMRHSLMGVADALAISRATLRNMKQNLLGAFIYNSIGIPVAAGILWPF TGTLLNPVVAGAAMALSSITVVSNANRLLRFKPKA" misc_feature complement(557951..560449) /gene="copA" /locus_tag="STM0498" /note="copper-exporting P-type ATPase CopA; Region: copA; PRK10671" /db_xref="CDD:182635" regulatory complement(560458..560463) /regulatory_class="ribosome_binding_site" /gene="copA" /locus_tag="STM0498" /note="putative RBS for copA; RegulonDB:STMS1H000835" gene 560548..560975 /gene="cueR" /locus_tag="STM0499" /db_xref="GeneID:1252019" regulatory 560548..560553 /regulatory_class="ribosome_binding_site" /gene="cueR" /locus_tag="STM0499" /note="putative RBS for cueR; RegulonDB:STMS1H000836" CDS 560559..560975 /gene="cueR" /locus_tag="STM0499" /note="similar to E. coli putative transcriptional regulator (AAC73589.1); Blastp hit to AAC73589.1 (135 aa), 91% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="putative heavy metal transcriptional repressor (MerR family)" /protein_id="NP_459494.1" /db_xref="GeneID:1252019" /translation="MNISDVAKKTGLTSKAIRFYEEKGLVTPPLRSENGYRTYTQKHL NELTLLRQARQVGFNLEECGELVNLFNDPRRHSADVKKRTLEKVAEIERHISELQSMR DQLLALAESCPGDDSADCPIIDNLSGCCHHKAQKPR" misc_feature 560559..560963 /gene="cueR" /locus_tag="STM0499" /note="HTH-type transcriptional regulator CueR; Region: PRK10227" /db_xref="CDD:182320" gene complement(560976..561440) /gene="ybbJ" /locus_tag="STM0500" /db_xref="GeneID:1252020" CDS complement(560976..561428) /gene="ybbJ" /locus_tag="STM0500" /note="similar to E. coli orf, hypothetical protein (AAC73590.1); Blastp hit to AAC73590.1 (151 aa), 85% identity in aa 3 - 149" /codon_start=1 /transl_table=11 /product="putative membrane protein implicated in regulation of membrane protease activity" /protein_id="NP_459495.1" /db_xref="GeneID:1252020" /translation="MIAMILVHPHIFWLSLGGLLLAAEMLGGNGYLLWSGVAAVITGL TVWLLPLGWEWQGVLFAALTLLAAWLWWRWLARRVREQKPTDSRLNQRGQQLVGRRFM LDAALVNGRGHMRVGDSSWPVCADEDLRAGTHVEVIAVEGITLRIRAV" misc_feature complement(560979..561359) /gene="ybbJ" /locus_tag="STM0500" /note="Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones]; Region: YbbJ; COG1585" /db_xref="CDD:441193" gene complement(561425..562356) /gene="ybbK" /locus_tag="STM0501" /db_xref="GeneID:1252021" CDS complement(561425..562342) /gene="ybbK" /locus_tag="STM0501" /note="similar to E. coli putative protease (AAC73591.1); Blastp hit to AAC73591.1 (305 aa), 95% identity in aa 1 - 302" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459496.1" /db_xref="GeneID:1252021" /translation="MLILIPILIFVALVIVGAGVKIVPQGYQWTVERFGRYTKTLQPG LSLVVPFMDRIGRKINMMEQVLDIPSQEVISKDNANVTIDAVCFIQVIDAPRAAYEVS NLELAIINLTMTNIRTVLGSMELDEMLSQRDSINTRLLHIVDEATNPWGIKVTRIEIR DVRPPAELISSMNAQMKAERTKRAYILEAEGVRQAEILKAEGEKQSQILKAEGERQSA FLQAEARERSAEAEARATQMVSEAIAAGDIQAINYFVAQKYTEALQQIGSANNSKVVM MPLDASSLMGAIAGISELVKDSASERKKA" misc_feature complement(561476..562339) /gene="ybbK" /locus_tag="STM0501" /note="Regulator of protease activity HflC, stomatin/prohibitin superfamily [Posttranslational modification, protein turnover, chaperones]; Region: HflC; COG0330" /db_xref="CDD:440099" regulatory complement(561435..561440) /regulatory_class="ribosome_binding_site" /gene="ybbJ" /locus_tag="STM0500" /note="putative RBS for ybbJ; RegulonDB:STMS1H000837" regulatory complement(562351..562356) /regulatory_class="ribosome_binding_site" /gene="ybbK" /locus_tag="STM0501" /note="putative RBS for ybbK; RegulonDB:STMS1H000838" gene 562474..563166 /gene="ybbL" /locus_tag="STM0502" /db_xref="GeneID:1252022" regulatory 562474..562479 /regulatory_class="ribosome_binding_site" /gene="ybbL" /locus_tag="STM0502" /note="putative RBS for ybbL; RegulonDB:STMS1H000839" CDS 562489..563166 /gene="ybbL" /locus_tag="STM0502" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73592.1); Blastp hit to AAC73592.1 (225 aa), 74% identity in aa 1 - 225" /codon_start=1 /transl_table=11 /product="putative ABC-type sugar/spermidine/putrescine transport system, ATPase component" /protein_id="NP_459497.1" /db_xref="GeneID:1252022" /translation="MTERSMLLELKQVGYRTATTKIVNNISFTLQRGEFKLITGPSGC GKSTLLKMVASLISPDIGVILFEGQDITTLSPEAYRQQVSYCAQTPALFGDTVYDNLI FPWQIRHQRPQPTAFADDLARFELPETILQKPITALSGGEKQRIALIRNLQFLPKILL LDEITSALDEHNKRNVNDIIHRYVRDKQVAVLWVTHDKDEIQHADKVITLTPSAGEMQ EARYERA" misc_feature 562489..563163 /gene="ybbL" /locus_tag="STM0502" /note="putative ABC transporter ATP-binding protein YbbL; Provisional; Region: PRK10247" /db_xref="CDD:182331" gene 563140..563932 /gene="ybbM" /locus_tag="STM0503" /db_xref="GeneID:1252023" regulatory 563140..563145 /regulatory_class="ribosome_binding_site" /gene="ybbL" /locus_tag="STM0502" /note="putative RBS for ybbM; RegulonDB:STMS1H000840" CDS 563153..563932 /gene="ybbM" /locus_tag="STM0503" /note="similar to E. coli putative metal resistance protein (AAC73593.1); Blastp hit to AAC73593.1 (268 aa), 88% identity in aa 10 - 267" /codon_start=1 /transl_table=11 /product="putative YbbM family transport protein, metal resistance protein" /protein_id="NP_459498.1" /db_xref="GeneID:1252023" /translation="MNEHNITNTSLALSMLLVVVAMLISHKEKLALEKDILWSVCRAV IQLIIVGYVLKYIFGVNHAALTLLMVLFICFNAAWNAQKRSKYIDKAFLSSFIAITVG AGLTLTVLVLTGSIEFAPMQVIPIAGMVAGNAMVAVGLCYNQLGLRFHSEQQQIQEKL SLGATPKMASAGLIRDSIRASLIPTIDSAKTVGLVSLPGMMSGLIFAGIDPVKAIKYQ IMVTFMLLSTASLSTIIACYLTYRKFYNSRHQLVVMPLKKS" misc_feature 563168..563905 /gene="ybbM" /locus_tag="STM0503" /note="TIGR00245 family protein; Region: TIGR00245" /db_xref="CDD:272982" gene complement(564018..564872) /gene="ybbN" /locus_tag="STM0504" /db_xref="GeneID:1252024" CDS complement(564018..564872) /gene="ybbN" /locus_tag="STM0504" /note="similar to E. coli putative thioredoxin-like protein (AAC73594.1); Blastp hit to AAC73594.1 (296 aa), 94% identity in aa 13 - 296" /codon_start=1 /transl_table=11 /product="putative thioredoxin protein" /protein_id="NP_459499.1" /db_xref="GeneID:1252024" /translation="MSVQNIVNINESNLQQTLEQSMTTPVLFYFWSERSQHCLQLTPV LESLAAQYHGQFILAKLDCDAEQMIAAQFGLRAIPTVYLFQNGQPVDGFQGPQPEEAI RALLDKVLPREEELKAQQAMQLMQEGNYIDALPLLKDAWQLSSQNSEIGLLLAEAQIA LNRSEEAEAVLKTIPLQDQDTRYQGLVAQIELLKQAADTPEIQQLQQQVADNPQDAAL ATQLALQLHQVGRNEEALELLFSHLRKDLTAAEGQTRKTFQEILAALGTGDALASKYR RQLYALLY" misc_feature complement(564552..564839) /gene="ybbN" /locus_tag="STM0504" /note="ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria; Region: ybbN; cd02956" /db_xref="CDD:239254" misc_feature complement(564444..564533) /gene="ybbN" /locus_tag="STM0504" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" misc_feature complement(564303..564494) /gene="ybbN" /locus_tag="STM0504" /note="Tetratricopeptide repeat; Region: TPR_19; pfam14559" /db_xref="CDD:434038" misc_feature complement(564348..564431) /gene="ybbN" /locus_tag="STM0504" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" misc_feature complement(564021..564290) /gene="ybbN" /locus_tag="STM0504" /note="Tetratricopeptide repeat; Region: TPR_20; pfam14561" /db_xref="CDD:434039" misc_feature complement(564135..564230) /gene="ybbN" /locus_tag="STM0504" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" misc_feature complement(564024..564122) /gene="ybbN" /locus_tag="STM0504" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" gene complement(564932..565713) /gene="ybbO" /locus_tag="STM0505" /db_xref="GeneID:1252025" CDS complement(564932..565702) /gene="ybbO" /locus_tag="STM0505" /EC_number="1.-.-.-" /note="similar to E. coli putative oxidoreductase (AAC73595.1); Blastp hit to AAC73595.1 (269 aa), 90% identity in aa 14 - 268" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_459500.1" /db_xref="GeneID:1252025" /translation="MQKSVLITGCSSGIGLDSALELKRQGFQILAGCRKPDDVARMNS MGFTGVLIDLDSPESVDRAADEVIALTDNRLYGIFNNAGYGVYGPLSTISREQMEQQF SSNFFGAHQLTMRLLPAMLPHGEGRIVMTSSVMGLISTPGRGAYAASKYALEAWSDAL RMELRHTGIKVSLIEPGPIRTRFTDNVNQTQRDKPVENPGIAARFTRDPDAVVAKVRH AFASDKPRLRYPVTLVTWAVMALKRILPGRMLDKILQS" misc_feature complement(564935..565702) /gene="ybbO" /locus_tag="STM0505" /note="SDR family oxidoreductase; Region: PRK08017" /db_xref="CDD:181198" regulatory complement(565708..565713) /regulatory_class="ribosome_binding_site" /gene="ybbO" /locus_tag="STM0505" /note="putative RBS for ybbO; RegulonDB:STMS1H000841" gene complement(565857..566488) /gene="tesA" /locus_tag="STM0506" /db_xref="GeneID:1252026" CDS complement(565857..566471) /gene="tesA" /locus_tag="STM0506" /EC_number="3.1.2.-" /note="similar to E. coli acyl-CoA thioesterase I; also functions as protease I (AAC73596.1); Blastp hit to AAC73596.1 (208 aa), 89% identity in aa 2 - 205" /codon_start=1 /transl_table=11 /product="multifunctional acyl-CoA thioesterase I; also functions as protease I, lysophospholipaseL(I)" /protein_id="NP_459501.1" /db_xref="GeneID:1252026" /translation="MNFNTVFRWHLPFLFLILLTFRAAAADTLLILGDSLSAGYRMAA SAAWPSLLNDKWQNKTSVVNASISGDTSQQGLARLPALLQQHHPRWVVVELGGNDGLR GFAPAQTEQTLRKIIQTVKAADAQPLLMQIHLPANYGRRYNESFSAIYPKLAKEFDIP LLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLTPFLS" misc_feature complement(565860..566423) /gene="tesA" /locus_tag="STM0506" /note="multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional; Region: PRK10528" /db_xref="CDD:182521" gene 566430..567128 /gene="ybbA" /locus_tag="STM0507" /db_xref="GeneID:1252027" regulatory 566430..566435 /regulatory_class="ribosome_binding_site" /gene="ybbA" /locus_tag="STM0507" /note="putative RBS for ybbA; RegulonDB:STMS1H000843" CDS 566442..567128 /gene="ybbA" /locus_tag="STM0507" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73597.1); Blastp hit to AAC73597.1 (228 aa), 92% identity in aa 1 - 228" /codon_start=1 /transl_table=11 /product="putative ABC superfamily (atp_bind) transporter" /protein_id="NP_459502.1" /db_xref="GeneID:1252027" /translation="MPAENSVEVHRLRKSVGQGEHELSILTGVELVVKRGETIALIGE SGSGKSTLLAILAGLDDGSSGEVSLVGKPLHQMDEEARAQLRAQHVGFVFQSFMLIPT LNALENVELPALLRGENSGQSKAGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARA FNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDPALAARCDRRLR LVNGQLQEEA" misc_feature 566442..567125 /gene="ybbA" /locus_tag="STM0507" /note="putative ABC transporter ATP-binding protein YbbA; Provisional; Region: PRK10584" /db_xref="CDD:182569" misc_feature 566568..566591 /gene="ybbA" /locus_tag="STM0507" /note="Walker A/P-loop; other site" /db_xref="CDD:213222" misc_feature order(566577..566582,566586..566594,566724..566726, 566952..566957,567054..567056) /gene="ybbA" /locus_tag="STM0507" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213222" misc_feature 566715..566726 /gene="ybbA" /locus_tag="STM0507" /note="Q-loop/lid; other site" /db_xref="CDD:213222" misc_feature 566880..566909 /gene="ybbA" /locus_tag="STM0507" /note="ABC transporter signature motif; other site" /db_xref="CDD:213222" misc_feature 566940..566957 /gene="ybbA" /locus_tag="STM0507" /note="Walker B; other site" /db_xref="CDD:213222" misc_feature 566964..566975 /gene="ybbA" /locus_tag="STM0507" /note="D-loop; other site" /db_xref="CDD:213222" misc_feature 567042..567062 /gene="ybbA" /locus_tag="STM0507" /note="H-loop/switch region; other site" /db_xref="CDD:213222" regulatory complement(566483..566488) /regulatory_class="ribosome_binding_site" /gene="tesA" /locus_tag="STM0506" /note="putative RBS for tesA; RegulonDB:STMS1H000842" gene 567114..569539 /gene="ybbP" /locus_tag="STM0508" /db_xref="GeneID:1252028" regulatory 567114..567119 /regulatory_class="ribosome_binding_site" /gene="ybbA" /locus_tag="STM0507" /note="putative RBS for ybbP; RegulonDB:STMS1H000844" CDS 567125..569539 /gene="ybbP" /locus_tag="STM0508" /note="similar to E. coli putative oxidoreductase (AAC73598.1); Blastp hit to AAC73598.1 (804 aa), 88% identity in aa 1 - 804" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459503.1" /db_xref="GeneID:1252028" /translation="MIARWFWREWRSPSLIIVWLALSLAVACVLALGSISDRMEKGLS QQSREFMAGDRTLQSSREVPKAWLEEARKRGLNVGEQLTFATMTFAGDTPQLASVKAV DSVYPMYGELQTRPGGVKAQPGSVLLAPRLMALLNLKTGDTIDVGDVTLRIAGEVVQE PDSGFNPFQMAPRLMMNMADVAKTGAIQPGSRVMWRYKFGGTPQQLAGYESWLLPQLK PEHRWYGLEQDDGALGKSLERSQQFLLLSALLTLLLAVAAVAVAMSHYCRSRYDLVAI LKTLGAGRAQLRKLIIGQWLMVLGLSAVTGGAIGLLFENILLVLLKPVLPADLPPASL WPWLWALGAMTVISLLVGLRPYRLLLATQPLRVLRRDVVARVWPLKIYLPVACAVVVA LLVGLMGGSMLLWAVLAGAVILALLCGLVGWMLLNVLRGMTLTSLPLRLAVSRLLRQP WSTLSQLSAFSLSFMLLALLLVLRGDLLDRWQQQLPPESPNYFLINIASEQVAPLKAF LAEHQVIPQTFYPIVRARLTKINGNPTEGQQDESLNRELNLTWQDTRPAHNPLVAGHW PPKPGEVSMEEGLAKRLNVKLGDSVTFMGDTQAFSAKVTSLRQVDWESLRPNFFFIFP SGALDGQPQSWLTSFRWENGNGMLTQLNREFPTVSLLDIGAILKQVGQVLEQVSRALE VMVVLVTLCGMLLLLAQVQVGMRQRHQELVVWRTLGAGKKLLRTTLWCEFAMLGLVAG LVAAIGAETALAILQINVFDFPWEPDWRLWGALPFCGALLLSVCGGWLGVRLLKGKAL FRQFSG" misc_feature 567125..569518 /gene="ybbP" /locus_tag="STM0508" /note="Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component [Secondary metabolites biosynthesis, transport and catabolism]; Region: YbbP; COG3127" /db_xref="CDD:442361" gene 569718..570858 /locus_tag="STM0509" /db_xref="GeneID:1252029" regulatory 569718..569723 /regulatory_class="ribosome_binding_site" /locus_tag="STM0509" /note="putative RBS for STM0509; RegulonDB:STMS1H000845" CDS 569725..570858 /locus_tag="STM0509" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_459504.1" /db_xref="GeneID:1252029" /translation="MTIKITALAASIGAAVAFMPFATQAEITVLKQDPQAGNPLSRLN FTVGGSIRPQFQNMTGNDGANGYKRNGFDGGTRFRFAADYYLFDDISWISYYELGVNI PAVFDWDNHYAKGATDTTRRMLYTGFKSATWGTLTFGQQNSIYYDVVGVKTDIWDYDM IGQAPGNGINGDYDGSYRTRKSLKYKKSIGNVDLYASYLFSDDYNANNGLNYKRKGGG SLGADYHLTDDLTWGTAWNYTRAEMRGNGNKTYDQNIVGTALSWTPENWTIAAGGGWY QNFMTTKKVSVNDYFAGDAWGLEYFVGYAFPIGQYAVKAIQPYFMGDRIEYVNGRDYL RTDNGVGITFQLDYGFRVDYEHVFTSSTDNLGDMNLVRLRYDF" misc_feature 569854..570855 /locus_tag="STM0509" /note="Outer membrane porin OmpC/OmpF/PhoE [Cell wall/membrane/envelope biogenesis]; Region: OmpC; COG3203" /db_xref="CDD:442436" gene 571109..571945 /gene="sfbA" /locus_tag="STM0510" /db_xref="GeneID:1252030" regulatory 571109..571114 /regulatory_class="ribosome_binding_site" /gene="sfbA" /locus_tag="STM0510" /note="putative RBS for sfbA; RegulonDB:STMS1H000846" CDS 571115..571945 /gene="sfbA" /locus_tag="STM0510" /note="similar to E. coli putative lipoprotein (AAC73308.1); Blastp hit to AAC73308.1 (271 aa), 37% identity in aa 14 - 258" /codon_start=1 /transl_table=11 /product="putative ABC-type transport system ATPase component/cell division protein" /protein_id="NP_459505.1" /db_xref="GeneID:1252030" /translation="MGLRQSLRIAASTLLLACGLQFAHADSSPQTIVFGVAPGPYGDM VKQAIAPTLKEKGYKVVVREFSDYVQPNMALANGSIDANLFQHTLYFDKFTADKGLKL SKLIVVPTAGMGFYSRKINSLDALKKGDIITLSNDPTNLARGLRFLQSLGLITIKDNI DPTKASERDIASNPKGLVFKPLEAAQLPRTLDGVTGALVNGNFAVAAGLDLSSAIKQE HLDENLKNIIAVRSEDADKPFAKDIVEAVKSPAYRAVIDDPKNIYSAFQKPEWMTATP " misc_feature 571205..571888 /gene="sfbA" /locus_tag="STM0510" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" gene 571975..572998 /gene="sfbB" /locus_tag="STM0511" /db_xref="GeneID:1252031" regulatory 571975..571980 /regulatory_class="ribosome_binding_site" /gene="sfbB" /locus_tag="STM0511" /note="putative RBS for sfbB; RegulonDB:STMS1H000847" CDS 571982..572998 /gene="sfbB" /locus_tag="STM0511" /note="similar to E. coli ATP-binding component of a transporter (AAC73310.1); Blastp hit to AAC73310.1 (343 aa), 45% identity in aa 1 - 340" /codon_start=1 /transl_table=11 /product="putative ABC-type transport system ATPase component/cell division protein" /protein_id="NP_459506.1" /db_xref="GeneID:1252031" /translation="MIEIEKVCVDFTAGRGTPTRAVDDVSLHIAAGEIFGIVGTSGAG KSTLLRTLNALTRPSQGRVNVNGVEISALDGKALRQARQRIGMIFQHFNLMHTRTVAQ NVAFSLKAAGWERSKIAPRVAEILTLVGLADKANRFPVQLSGGQKQRVGIARAIANHP DVLLCDEPTSALDLETSATILALLRQINAQLGITIVLITHEMNVIKSICDRVAVMSGG KVVESGEVFDVFAHPQHAFTQQLVSHTLNLTLPERLREHLPGQLLKILFIGDSAEQPV LSEVAIKFGVAVNILHGKIEYIGERALGILVVQLTAPHNPTAVAAAVEHIRQRTAQVE VIRG" misc_feature 571982..572992 /gene="sfbB" /locus_tag="STM0511" /note="ABC-type methionine transport system, ATPase component [Amino acid transport and metabolism]; Region: AbcC; COG1135" /db_xref="CDD:440750" gene 572984..573650 /gene="sfbC" /locus_tag="STM0512" /db_xref="GeneID:1252032" regulatory 572984..572989 /regulatory_class="ribosome_binding_site" /gene="sfbC" /locus_tag="STM0512" /note="putative RBS for sfbC; RegulonDB:STMS1H000848" CDS 572991..573650 /gene="sfbC" /locus_tag="STM0512" /note="similar to E. coli putative transport system permease protein (AAC73309.1); Blastp hit to AAC73309.1 (217 aa), 44% identity in aa 15 - 217" /codon_start=1 /transl_table=11 /product="putative binding-protein-dependent transport systems inner membrane component" /protein_id="NP_459507.1" /db_xref="GeneID:1252032" /translation="MDDLLPDLTLAFNETFQMLSISTVLAILGGLPLGFLIFVTDRHL FWQNRFIYLVASVLVNIIRSVPFVILLVLLLPLTQLLLGNTIGPIAASVPLSVAAIAF YARLVDSALREVDKGIIEAALAFGASPMRIICTVLLPEASAGLLRGLTITLVSLIGYS AMAGIVGGGGVGDLAIRYGYYRYETEVMVVTVVALIVLVQVVQMLGDWLAKRADKRDR H" misc_feature 572991..573638 /gene="sfbC" /locus_tag="STM0512" /note="ABC-type methionine transport system, permease component [Amino acid transport and metabolism]; Region: MetP; COG2011" /db_xref="CDD:441614" gene complement(573689..574801) /gene="ybbB" /locus_tag="STM0513" /db_xref="GeneID:1252033" CDS complement(573689..574783) /gene="ybbB" /locus_tag="STM0513" /note="similar to E. coli putative capsule anchoring protein (AAC73605.1); Blastp hit to AAC73605.1 (364 aa), 78% identity in aa 1 - 364" /codon_start=1 /transl_table=11 /product="putative ATPase" /protein_id="NP_459508.1" /db_xref="GeneID:1252033" /translation="MQDRQKAQDYRALLLADTPLIDVRAPIEFEQGAMPGAINLPLMM DDERAAVGTCYKRQGADAALALGHRLVCGDIRQQRLEAWKAAYQRFPNGYLCCARGGQ RSHIVQRWLQETGIDCPLIEGGYKALRQTAIQATWQLAQKPILLIGGCTGSGKTQLVR QQPNGVDLEGLARHRGSSFGRTLNPQLSQASFENKLAVELLKINARQTLKRWVLEDEG RTIGANHLPECLRERMAQAPIAVVEDPFALRLERLREEYFIRMHHDFTHAYGDEAGWQ AYSEYLHHGLFAIRRRLGLQRFAELTDTLDRALAEQLSSGSTDGHMAWLVPLLNEYYD PMYRYQLEKKAANIVFRGTWQDVANWLKAQ" misc_feature complement(573692..574774) /gene="ybbB" /locus_tag="STM0513" /note="tRNA 2-selenouridine synthase; Provisional; Region: PRK11784" /db_xref="CDD:236982" regulatory complement(574796..574801) /regulatory_class="ribosome_binding_site" /gene="ybbB" /locus_tag="STM0513" /note="putative RBS for ybbB; RegulonDB:STMS1H000849" gene complement(574853..575795) /gene="ybbS" /locus_tag="STM0514" /db_xref="GeneID:1252034" CDS complement(574853..575779) /gene="ybbS" /locus_tag="STM0514" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73606.1); Blastp hit to AAC73606.1 (308 aa), 86% identity in aa 1 - 307" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459509.1" /db_xref="GeneID:1252034" /translation="MFDPETLRTFISVAETGSFSKAAERLCKTTATISYRIKLLEENT GVGLFFRTTRSVSLTAAGSHLLSQAKDWLAWLDSMPDELRQVNDGVERQVNIVVNNLL YSPQAVASLLSWLNARYPFTQFHFSRQIYMGVWDSLLYEGFSLAIGVTGTEPLANTFM LDPLGSVQWRFVMSADHPLAHVSGPLTEAQLRRFPAINIEDSARTLTKRVAWRLPGQK EIIVPDMETKIAAHLAGVGIGFVPQPLCQTLIDKNELVSCTIPTMRPPSPLSLAWHKF GGGKAVEDIVKLFTQRQPEIAGFLSIFNTVRC" misc_feature complement(574856..575779) /gene="ybbS" /locus_tag="STM0514" /note="HTH-type transcriptional activator AllS; Region: PRK10094" /db_xref="CDD:182237" regulatory complement(575790..575795) /regulatory_class="ribosome_binding_site" /gene="ybbS" /locus_tag="STM0514" /note="putative RBS for ybbS; RegulonDB:STMS1H000850" gene 575994..576488 /gene="allA" /locus_tag="STM0515" /db_xref="GeneID:1252035" regulatory 575994..575999 /regulatory_class="ribosome_binding_site" /gene="allA" /locus_tag="STM0515" /note="putative RBS for allA; RegulonDB:STMS1H000851" CDS 576006..576488 /gene="allA" /locus_tag="STM0515" /note="similar to E. coli orf, hypothetical protein (AAC73607.1); Blastp hit to AAC73607.1 (160 aa), 85% identity in aa 1 - 160" /codon_start=1 /transl_table=11 /product="ureidoglycolate hydrolase" /protein_id="NP_459510.1" /db_xref="GeneID:1252035" /translation="MKLEVLPLDQKTFSAYGDVIETQEREFFHINNGLVERYHDLAKV EVLEQDRTLISINRAQPAAMPIVVHELERHPLGTQAFVPMNGEAFVVIVALGDDKPDL STLRAFISNGRQGVNYHRNVWHHPLFAWQTVTDFLTVDRGGSDNCDVESIPTHELCFA " misc_feature 576006..576485 /gene="allA" /locus_tag="STM0515" /note="ureidoglycolate lyase; Region: PRK03606" /db_xref="CDD:179606" gene 576550..577385 /gene="allR" /locus_tag="STM0516" /db_xref="GeneID:1252036" regulatory 576550..576555 /regulatory_class="ribosome_binding_site" /gene="allR" /locus_tag="STM0516" /note="putative RBS for allR; RegulonDB:STMS1H000852" CDS 576567..577385 /gene="allR" /locus_tag="STM0516" /note="similar to E. coli putative regulator (AAC73608.1); Blastp hit to AAC73608.1 (271 aa), 91% identity in aa 1 - 268" /codon_start=1 /transl_table=11 /product="putative regulatory protein" /protein_id="NP_459511.1" /db_xref="GeneID:1252036" /translation="MTEVRRRGRPGQAEPTAQKGAQALERGIAILQYLERSGGSSSVS DISGSLDLPLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVFNVGSAYIHNRDVLSVA GPFMHRLMLLSGETVNVAIRNGNEAVLIGQKECKSMVRMCAPLGSRLPLHASGAGKAL LYPLTEEELVGIVVNTGLRRFTPTTLVDLPILLKNLEQAREQGYTVDQEEHVVGLNCI ASAIYDDAGSVVAAISISGPASRLTEDRFISQGELVRDTAKDISTALGLKPPVA" misc_feature 576567..577379 /gene="allR" /locus_tag="STM0516" /note="HTH-type transcriptional repressor AllR; Region: PRK10163" /db_xref="CDD:182279" gene 577456..579251 /gene="gcl" /locus_tag="STM0517" /db_xref="GeneID:1252037" regulatory 577456..577461 /regulatory_class="ribosome_binding_site" /gene="gcl" /locus_tag="STM0517" /note="putative RBS for gcl; RegulonDB:STMS1H000853" CDS 577470..579251 /gene="gcl" /locus_tag="STM0517" /EC_number="4.1.1.47" /note="similar to E. coli glyoxylate carboligase (AAC73609.1); Blastp hit to AAC73609.1 (593 aa), 96% identity in aa 1 - 593" /codon_start=1 /transl_table=11 /product="glyoxylate carboligase" /protein_id="NP_459512.1" /db_xref="GeneID:1252037" /translation="MAKMRAVDAAMYVLEKEGITTAFGVPGAAINPFYSAMRKHGGIR HILARHVEGASHMAEGYTRAAAGNIGVCLGTSGPAGTDMITALYSASADSIPILCITG QAPRARLHKEDFQAVDIEAIAKPVSKMAVTVREAALVPRVLQQAFHLMRSGRPGPVLV DLPFDVQVAEIEFDPDMYEPLPVYKPAASRVQIEKALEMLIQSERPVIVAGGGVINAD AAPLLQQFAELTNVPVIPTLMGWGCIPDDHPLMAGMVGLQTAHRYGNATLLASDMVFG IGNRFANRHTGSVEKYTQGRKIIHIDIEPTQIGRVLCPDLGIVSDAKAALTLLIDVAQ EMQKAGRLPCRKTWVDECQQRKRTLLRKTHFDNVPVKPQRVYEEMNKAFGRDVCYVTT IGLSQIAAAQMLHVFKDRHWINCGQAGPLGWTIPAALGVCAADPQRNVVAISGDFDFQ FLIEELAVGAQFNIPYIHVLVNNAYLGLIRQSQRAFDMDYCVQLAFENINSSEVNGYG VDHVKVAEGLGCKAIRVFKPEDIAPAFEQAKALMAQYRVPVVVEVILERVTNISMGSE LDNVTEFEEVADSAKDAPTETCFMKYE" misc_feature 577470..579230 /gene="gcl" /locus_tag="STM0517" /note="glyoxylate carboligase; Provisional; Region: PRK11269" /db_xref="CDD:183066" gene 579254..580040 /gene="gip" /locus_tag="STM0518" /db_xref="GeneID:1252038" regulatory 579254..579259 /regulatory_class="ribosome_binding_site" /gene="gip" /locus_tag="STM0518" /note="putative RBS for gip; RegulonDB:STMS1H000854" CDS 579264..580040 /gene="gip" /locus_tag="STM0518" /note="similar to E. coli glyoxylate-induced protein (AAC73610.1); Blastp hit to AAC73610.1 (258 aa), 84% identity in aa 1 - 258" /codon_start=1 /transl_table=11 /product="glyoxylate -induced protein" /protein_id="NP_459513.1" /db_xref="GeneID:1252038" /translation="MLRFSANLSMLFTEYDFLERFDKAALSGFRGVEFMFPYDNDIEV LKRKLRDNNLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAAAIRYARALGNKKI NCLVGKTPSGFSATEIHDTLVENLRYAANMLAKEDILLLIEPINHFDMPGFHLTGTQQ ALALIKDIGSDNIKIQYDIYHMQRMEGELTQTMTAWADKIGHLQIADNPRRGEPGTGE INYDFIFNVIKQSGYDGWVGCEYKPLTTTEAGLSWINQYR" misc_feature 579264..580037 /gene="gip" /locus_tag="STM0518" /note="hydroxypyruvate isomerase; Provisional; Region: PRK09997" /db_xref="CDD:182188" gene 580131..581019 /gene="glxR" /locus_tag="STM0519" /db_xref="GeneID:1252039" regulatory 580131..580136 /regulatory_class="ribosome_binding_site" /gene="glxR" /locus_tag="STM0519" /note="putative RBS for glxR; RegulonDB:STMS1H000855" CDS 580141..581019 /gene="glxR" /locus_tag="STM0519" /EC_number="1.1.1.60" /note="similar to E. coli putative oxidoreductase (AAC73611.1); Blastp hit to AAC73611.1 (292 aa), 91% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="tartronic semialdehyde reductase" /protein_id="NP_459514.1" /db_xref="GeneID:1252039" /translation="MKLGFIGLGIMGSPMAINLARAGHQLHVTTIGPVADELLSLGAV NVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKR FAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVG GNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHG ERMINRTFEPGFKIALHQKDLNLALQSAKALALNLPNTATCQELFNTCAANGGSQLDH SAMVQALELMANHKLS" misc_feature 580141..581016 /gene="glxR" /locus_tag="STM0519" /note="2-hydroxy-3-oxopropionate reductase; Region: PRK15059" /db_xref="CDD:185019" gene 581079..582332 /locus_tag="STM0520" /db_xref="GeneID:1252040" regulatory 581079..581084 /regulatory_class="ribosome_binding_site" /locus_tag="STM0520" /note="putative RBS for STM0520; RegulonDB:STMS1H000856" CDS 581085..582332 /locus_tag="STM0520" /note="similar to E. coli putative transport protein, cryptic, orf, joins former yjiZ and yjjL (AAC77312.1); Blastp hit to AAC77312.1 (453 aa), 24% identity in aa 40 - 439" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_459515.1" /db_xref="GeneID:1252040" /translation="MSETKKSGIDYWKQIVVVMSLGWVAIWIYRTVLTPIYPEIQASL DNVSNAEIGAIASFYFFAYCSMQIPCGILVDKFGQKIMLMAGFTLFIIGTLCIAKANG LTMIYIGSLMAGGGCASFFSSAYSLSSANVPQARRALANAIINSGSAIGMGIGLIGSS ILVKNMSMAWQNVLYIVAAILVIMLCVFTLIIRGKAKSDSAQAEKQTQTVTEDEKRAP LFSGLLCSVYFLYFCTCYGYYLIVTWLPSYLQTERGFDGGAIGLASALVAVVGVPGAL FFSHLSDKFRNSKVKVILGLEIVAAAMLAFTVLSPNTTMLMVSLTLYGLLGKMAVDPI LISFVSEQASAKSLGRAFSLFNFFGMSSAVVAPTLTGFISDVTGSKEISFVISACLVV TGTLIFAVVTLYKKKATQRIASA" misc_feature 581115..582287 /locus_tag="STM0520" /note="Sugar phosphate permease [Carbohydrate transport and metabolism]; Region: UhpC; COG2271" /db_xref="CDD:441872" gene 582408..582662 /gene="ybbV" /locus_tag="STM0521" /db_xref="GeneID:1252041" CDS 582408..582662 /gene="ybbV" /locus_tag="STM0521" /note="similar to E. coli orf, hypothetical protein (AAC73612.1); Blastp hit to AAC73612.1 (92 aa), 56% identity in aa 39 - 91" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459516.1" /db_xref="GeneID:1252041" /translation="MREKRDLWNIKESYTSSAVIAKTYYLRQKPNETGRHLTISPYGW DLYITCQITLWSAVFLYWGYQHLISCWPLLSAHYLLRRRW" gene 582569..583882 /gene="allP" /locus_tag="STM0522" /db_xref="GeneID:1252042" CDS 582569..583882 /gene="allP" /locus_tag="STM0522" /note="similar to E. coli putative transport protein (AAC73613.1); Blastp hit to AAC73613.1 (437 aa), 92% identity in aa 1 - 437" /codon_start=1 /transl_table=11 /product="putative NCS1 family, allantoin transport protein" /protein_id="NP_459517.1" /db_xref="GeneID:1252042" /translation="MVGGFFILGLSTFNIMLAIIISALFIAAAMVMNGAAGSKYGVPF AMILRGSYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLAFLILIGKIWPGFLTLGGDF KLLGLSLPGLITFLIFWIINVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLVG IGPILDYLPSGVQKAEHSGFLFLVVINAVVAVWAAPAVSASDFTQNAHSFRAQALGQT LGLIVAYILFAVASVCIIAGASIHYGMDTWNVLDIVQRWDSLFASFFAVLVILMTTIS TNATGNIIPAGYQIAALAPTKLNYKNGVMIASIISLLICPWKLMENQDSIYLFLDIIG GMLGPVIGVMLAHYFVVMRGKINLDELYTASGDYKYYDNGFNLTAFSVTLVAVILSLG GKFIPFMEPLSRVSWFVGVIVAFVAYALLKKRTGFENTGEKKLAG" misc_feature 582569..583879 /gene="allP" /locus_tag="STM0522" /note="putative allantoin permease; Region: PRK11375" /db_xref="CDD:183106" gene 583949..585322 /gene="allB" /locus_tag="STM0523" /db_xref="GeneID:1252043" regulatory 583949..583954 /regulatory_class="ribosome_binding_site" /gene="allB" /locus_tag="STM0523" /note="putative RBS for allB; RegulonDB:STMS1H000857" CDS 583961..585322 /gene="allB" /locus_tag="STM0523" /EC_number="3.5.2.5" /note="similar to E. coli putative hydrolase (AAC73614.1); Blastp hit to AAC73614.1 (453 aa), 93% identity in aa 1 - 453" /codon_start=1 /transl_table=11 /product="allantoinase" /protein_id="NP_459518.1" /db_xref="GeneID:1252043" /translation="MSFDLIIKNGTVILENEARVIDIAVQGGKIAAIGENLGEAKNVL DATGLIVSPGMVDAHTHISEPGRTHWEGYETGTRAAAKGGITTMIEMPLNQLPATVDR ETIELKFDAAKGKLTIDAAQLGGLVSYNLDRLHELDEVGVVGFKCFVATCGDRGIDND FRDVNDWQFYKGAQKLGEMDQTVLVHCENALICDELGEEAKREGRVTAHDYVASRPVF TEVEAIRRVLYLAKAAGCRLHVCHISSPEGVEEVTRARQEGQDVTCESCPHYFVLDTD QFEEIGTLAKCSPPIRDQENQKGMWEKLFNGEIDCLVSDHSPCPPEMKAGNIMQAWGG IAGLQNCMDVMFDEAVQKRGMSLPMFGKLMATNAADIFGLKHKGRIAPGKDADLVFIQ PDSSYVLKNEDLEYRHKVSPYVGRTIGARITKTILRGDVIYDIEHGFPVPPKGQFILK HQQ" misc_feature 583961..585307 /gene="allB" /locus_tag="STM0523" /note="allantoinase AllB; Region: PRK08044" /db_xref="CDD:169193" misc_feature order(584135..584137,584141..584143,584516..584518, 584684..584686,584903..584905) /gene="allB" /locus_tag="STM0523" /note="active site" /db_xref="CDD:238640" gene 585370..586679 /gene="ybbY" /locus_tag="STM0524" /db_xref="GeneID:1252044" regulatory 585370..585375 /regulatory_class="ribosome_binding_site" /gene="ybbY" /locus_tag="STM0524" /note="putative RBS for ybbY; RegulonDB:STMS1H000858" CDS 585381..586679 /gene="ybbY" /locus_tag="STM0524" /note="similar to E. coli putative transport (AAC73615.1); Blastp hit to AAC73615.1 (435 aa), 79% identity in aa 8 - 435" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_459519.1" /db_xref="GeneID:1252044" /translation="MFPVINRESVLSGFQWFFFIFCNTVVVPPTLLSAFHLPADNLLM LTQYAFLTTALACLVQAFCGHRRAIMEGPTGLWWGAILTITLGEASRGTPLNDIASSL SVGIAISAMVTIFIGISGLGHRLARLFTPAVMVFFMLLLGAQLTSIFFKGMLGLPFGI ADTSARIKLAPFGLAVAVMCFILAMIIFLQQRISRYALLVGTVVGWGLWRLCFPSSHL PPGELSWRWFPLGSHGTLMPGIIVTAVMTGLVNISNTYGAIRGTDIFYLHQGSGSSRY RRSFMISGLMTLVTVPFAVVPFSPFVSSIGLLTQTGDSSRKSFICGSALCLLVAIITP LTRLFCAIPLAISSAVMLVSYLPLLYSGLVFSQQITFTARNIYRLALPLFVGIFLMGL PPVYLQDLPLMIRPLLSNGLLVGILLAVLMENLIPWERIK" misc_feature 585381..586676 /gene="ybbY" /locus_tag="STM0524" /note="uracil/xanthine transporter; Region: PRK11412" /db_xref="CDD:183124" gene 586691..587850 /gene="glxK" /locus_tag="STM0525" /db_xref="GeneID:1252045" regulatory 586691..586696 /regulatory_class="ribosome_binding_site" /gene="glxK" /locus_tag="STM0525" /note="putative RBS for glxK; RegulonDB:STMS1H000859" CDS 586702..587850 /gene="glxK" /locus_tag="STM0525" /note="similar to E. coli orf, hypothetical protein (AAC73616.1); Blastp hit to AAC73616.1 (381 aa), 80% identity in aa 1 - 379" /codon_start=1 /transl_table=11 /product="glycerate kinase II" /protein_id="NP_459520.1" /db_xref="GeneID:1252045" /translation="MKIVIAPDSFKESLSADKCCQAIKAGFSTVFPDARYVCLPIADG GEGTVDAMVAATGGKRVSVDVSGPMGEKVNGFYGLTGDGKTAIIEMAAASGLMLVAPE ARNPLLASSFGTGELIRHALDAGIRHIILGIGGSATVDGGMGVAQALGVRFLDAQGTP LGAGGGNLSRLASIDLQGCDPRISECRIEVACDVDNPLVGPRGAAAVFGPQKGATPEM VETLENGLRNYARVLHALTGRDMSQIPGGGAAGGMGIAAIVFLEAEMKPGIEIVMQAV KLEEAVKEASLVITGEGRIDSQTAGGKAPIGVASVAKRHHVPVIGIAGVLGDGVEVVH RHGIDAVFSILPRLAPLPEVLANGEQNLYHSACNIARVIKLGQDIGTR" misc_feature 586702..587844 /gene="glxK" /locus_tag="STM0525" /note="glycerate 3-kinase; Region: PRK09932" /db_xref="CDD:182152" gene complement(587930..588727) /gene="ylbA" /locus_tag="STM0526" /db_xref="GeneID:1252046" CDS complement(587930..588715) /gene="ylbA" /locus_tag="STM0526" /note="similar to E. coli orf, hypothetical protein (AAC73617.1); Blastp hit to AAC73617.1 (261 aa), 92% identity in aa 1 - 261" /codon_start=1 /transl_table=11 /product="putative glyoxylate utilization" /protein_id="NP_459521.1" /db_xref="GeneID:1252046" /translation="MGYLNNVTGYRDDLLANRAIVKHGNYALLTPDGLVKNIIPGFEN CDVTILSTPKLGASFVDYLVTLHQNGGNQQGFGGEGIETFLYVIAGNIEAKAEGKTFS LTQGGYLYCPPGEMMTFSNAQTEDSQLFLYKRRYTPVEGHAPWLVSGNASQLERIHYE GMEDVILLDFLPKELGFDMNMHILSFEPGASHGYIETHVQEHGAYILSGQGVYNLDNN WVPVKKGDYIFMGAYSLQAGYGVGRGEAFSYIYSKDCNRDVMI" misc_feature complement(587933..588685) /gene="ylbA" /locus_tag="STM0526" /note="putative allantoin catabolism protein; Region: ura-cupin; TIGR03214" /db_xref="CDD:200251" regulatory complement(588722..588727) /regulatory_class="ribosome_binding_site" /gene="ylbA" /locus_tag="STM0526" /note="putative RBS for ylbA; RegulonDB:STMS1H000860" gene complement(588726..589973) /gene="allC" /locus_tag="STM0527" /db_xref="GeneID:1252047" CDS complement(588726..589961) /gene="allC" /locus_tag="STM0527" /EC_number="3.5.3.-" /note="similar to E. coli putative hydantoin utilization protein (AAC73618.1); Blastp hit to AAC73618.1 (411 aa), 88% identity in aa 1 - 411" /codon_start=1 /transl_table=11 /product="allantoate amidohydrolase" /protein_id="NP_459522.1" /db_xref="GeneID:1252047" /translation="MIKHFRHAIEETLPWLSSIGADPTGGMTRLLYSPEWLETQQQFK KRMAESGLETRFDDVGNLYGRLCGTQFPEQVILSGSHIDTVVNGGNLDGQFGALAAWL ALDWLKATYGAPLRTVEVVSMAEEEGSRFPYVFWGSKNIFGLANPEEVRHIQDAKGTG FVDAMQACGFTLPAAPLAARTDIRAFVELHIEQGCVLESNGQSIGVVNAIVGQRRYTV TLNGESNHAGTTPMGYRRDTVHAFSRICSQSIEKAKQHGDPLVLTFGKVEPQPNTVNV VPGKTTFTIDCRHTDAAVLREFTEQLENDMRAICDEMDISIDIDLWMDEAPVPMNAEL VAALTRLCETEQLNYRIMHSGAGHDAQIFAPRVPTCMIFVPSINGISHNPAERTNIND LAEGVKTLALMLHQLAWQK" misc_feature complement(588729..589961) /gene="allC" /locus_tag="STM0527" /note="allantoate amidohydrolase; Region: AllC; TIGR03176" /db_xref="CDD:274471" regulatory complement(589968..589973) /regulatory_class="ribosome_binding_site" /gene="allC" /locus_tag="STM0527" /note="putative RBS for allC; RegulonDB:STMS1H000861" gene complement(589983..591043) /gene="allD" /locus_tag="STM0528" /db_xref="GeneID:1252048" CDS complement(589983..591032) /gene="allD" /locus_tag="STM0528" /note="similar to E. coli putative malate dehydrogenase (AAC73619.1); Blastp hit to AAC73619.1 (349 aa), 86% identity in aa 1 - 349" /codon_start=1 /transl_table=11 /product="ureidoglycolate dehydrogenase" /protein_id="NP_459523.1" /db_xref="GeneID:1252048" /translation="MKISRETLHQLIENKLYKAGLKREHAAIVADVLVYADARGIHSH GAVRVEYYAERISKGGTNREPTFRIENTGPCTAILHADNAAGQVAAKMGMEHAIEIAK KNGVAVVGISRMGHSGAISYFVRQAAREGLIGLSICQSDPMVVPFGGADIYYGTNPLA FAAPGEGDDIITFDMATTVQAWGKVLDARSRNESIPESWAVDKNGAPTHDPFAVNALL PAAGPKGYGLMMMIDILSGILLGLPFGRQVSSMYEDLHAGRNLGQLHLVINPAFFSSC ELFRKHISQTMQELNAVKPAPGFKQVYYPGQDQDIKQKNADMNGIDIVDDIYQYLISD ALYLKSYETKNPFAQ" misc_feature complement(589986..591032) /gene="allD" /locus_tag="STM0528" /note="ureidoglycolate dehydrogenase; Provisional; Region: PRK15025" /db_xref="CDD:184985" regulatory complement(591038..591043) /regulatory_class="ribosome_binding_site" /gene="allD" /locus_tag="STM0528" /note="putative RBS for allD; RegulonDB:STMS1H000862" gene 591352..593027 /gene="fdrA" /locus_tag="STM0529" /db_xref="GeneID:1252049" regulatory 591352..591357 /regulatory_class="ribosome_binding_site" /gene="fdrA" /locus_tag="STM0529" /note="putative RBS for fdrA; RegulonDB:STMS1H000863" CDS 591363..593027 /gene="fdrA" /locus_tag="STM0529" /note="similar to E. coli involved in protein transport; multicopy suppressor of dominant negative ftsH mutants (AAC73620.1); Blastp hit to AAC73620.1 (555 aa), 82% identity in aa 1 - 555" /codon_start=1 /transl_table=11 /product="putative acyl-CoA synthetase, involved in protein transport" /protein_id="NP_459524.1" /db_xref="GeneID:1252049" /translation="MIHAFIKKGCFQDSVSLMIISRKLSESENVDDVSVMMGTPANKS LLETTGFWHDDFHGATPNDICVAIRTEAVDDGITQVIVQQLEEALQQLAQGSSGSQSL IQVRRWESACQKLPEASLALVSVAGEYAAELAEQALDRSLNVMIFSDNVTLDDEIRLK RRARDKGLLVMGPDCGTAMIANTPLAFANVMPEGNIGVIGASGTGIQELCSQIALAGE GITHAIGLGGRDLSAEVGGISALTALEILSADEKSQVLAFVSKPPADAVRQHIIAAMK AAGKPVVALFLGFSSPVAREENVWFASTLDEAARLACLLSRVTSQRKEMVSTGGVIRG LYTGGTLAAEAAGLLAGYLGVAADTEHHHGMMLDADGHQIIDLGDDFYTVGRPHPMID PALRNQLIAGLGAQPQVRVLLVDVVIGFGATADPAASLIQAWQKACDARARDQPLFAI ATVTGTERDPQCRSQQIAALEDAGITVVDSLPEATLLAAELIRPTLSSTHPSAPRLLE AVAVINAGLRSFALDLQAAGMPVVHYQWAPVAGGNKKLARLLERLQ" misc_feature 591363..593024 /gene="fdrA" /locus_tag="STM0529" /note="membrane protein FdrA; Validated; Region: PRK06091" /db_xref="CDD:180395" gene 593026..594296 /gene="ylbE" /locus_tag="STM0530" /db_xref="GeneID:1252050" regulatory 593026..593031 /regulatory_class="ribosome_binding_site" /gene="ylbE" /locus_tag="STM0530" /note="putative RBS for ylbE; RegulonDB:STMS1H000864" CDS 593037..594296 /gene="ylbE" /locus_tag="STM0530" /note="similar to E. coli orf, hypothetical protein (AAC73621.1); Blastp hit to AAC73621.1 (333 aa), 94% identity in aa 1 - 332" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459525.1" /db_xref="GeneID:1252050" /translation="MFTSVAQANAAVIEQIRRARPHWLDVKPASSLISVLNQGKTLLH AGPPMRWQEMTGPMKGACIGACLFEGWAKDEMSALALLEQGKVNFIPCHHVNAVGPMG GITSASMPMLVVENITDGNRAYCNLNEGIGKVMRFGAYGEDVQQRLRWMRDVLMPVLS AALGRLERGLDLTAMMAQGITMGDEFHQRNIASSALLMRTLAPHIARLEHDKQQIAEV MDFLSVTDQFFLNLAMAYCKAAMDAGAQIRAGSIVTAMTRNGDMFGIRVSGLGDRWFT APVNTPQGLFFTGFSQDQANPDMGDSAITETFGIGGAAMIAAPGVTRFVGAGGMEAAK SVSEEMAEIYLERNMQLQIPGWDFQGACLGLDIRRVVETGITPLINTGIAHKEAGIGQ IGAGTVRAPLACFEQALEALAESMGVS" misc_feature 593295..593942 /gene="ylbE" /locus_tag="STM0530" /note="Protein of unknown function (DUF1116); Region: DUF1116; pfam06545" /db_xref="CDD:428999" gene 594308..595117 /gene="ylbF" /locus_tag="STM0531" /db_xref="GeneID:1252051" CDS 594308..595117 /gene="ylbF" /locus_tag="STM0531" /note="similar to E. coli putative carboxylase (AAC73622.1); Blastp hit to AAC73622.1 (271 aa), 65% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459526.1" /db_xref="GeneID:1252051" /translation="MKRIHPLMASRQSADYRQPWQMSGVWRRSINFVAKSGELLTLHR RGSGFSPGGWILRGGDFDALRDVLTDGEKPQSTAAGIQIGEFLLCEPERRCSLRVPRY LASPRLNATYMQRSEETGLFGPLTVAAAQPLCPELRQFCHCFQSALAGAATDWRLWLG KGPGLTPSHDDTLTGMLLAAWYFGAIDERAGRNFFAQSGSLDRATTLVSVSYLRYAAM GYFASPLLHFIHALRRDARTETAIDGLLALGHTSGADTLLGFWLGQQIVKG" misc_feature 594779..595099 /gene="ylbF" /locus_tag="STM0531" /note="Protein of unknown function (DUF2877); Region: DUF2877; pfam11392" /db_xref="CDD:431864" gene 595110..596014 /gene="arcC" /locus_tag="STM0532" /db_xref="GeneID:1252052" regulatory 595110..595115 /regulatory_class="ribosome_binding_site" /gene="ylbF" /locus_tag="STM0531" /note="putative RBS for arcC; RegulonDB:STMS1H000865" CDS 595121..596014 /gene="arcC" /locus_tag="STM0532" /EC_number="2.7.2.2" /note="similar to E. coli putative carbamate kinase (AAC73623.1); Blastp hit to AAC73623.1 (297 aa), 86% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="putative carbamate kinase" /protein_id="NP_459527.1" /db_xref="GeneID:1252052" /translation="MKTLVVALGGNALLQRGEALTAENQYRNIADAVPALARLARSYR LAIVHGNGPQVGLLALQNLAWKAVEPYPLDVLVAESQGMIGYMLAQRLALEPDMPPVT AVLTRIKVSADDPAFLEPEKFIGPVYSPEEQMALEATYGWHMKRDGKYLRRVVASPAP RQIIESAAIELLLKEGHVVICSGGGGVPVAGEGEGVEAVIDKDLAAALLAEQIAADGL IILTDADAVYEHWGTPQQRAIRQASPDELAPFAKADGAMGPKVTAVSGYVKRCGKPAW IGALSRIDDTLAGRAGTCICL" misc_feature 595121..596005 /gene="arcC" /locus_tag="STM0532" /note="carbamate kinase; Reviewed; Region: PRK09411" /db_xref="CDD:181831" misc_feature order(595139..595141,595145..595150,595268..595276, 595484..595486,595721..595729) /gene="arcC" /locus_tag="STM0532" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:239768" misc_feature order(595148..595150,595784..595789,595802..595804, 595811..595813,595886..595891,595898..595900) /gene="arcC" /locus_tag="STM0532" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:239768" misc_feature order(595148..595150,595784..595789,595802..595804, 595811..595813,595886..595891,595898..595900) /gene="arcC" /locus_tag="STM0532" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:239768" misc_feature order(595298..595300,595331..595333,595340..595345, 595352..595354,595364..595369,595376..595378, 595385..595390,595427..595435,595439..595441, 595613..595615,595622..595624,595703..595705) /gene="arcC" /locus_tag="STM0532" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:239768" gene complement(596055..597134) /gene="purK" /locus_tag="STM0533" /db_xref="GeneID:1252053" CDS complement(596055..597122) /gene="purK" /locus_tag="STM0533" /EC_number="4.1.1.21" /note="similar to E. coli phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit (AAC73624.1); Blastp hit to AAC73624.1 (355 aa), 88% identity in aa 1 - 353" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole carboxylase = AIR carboxylase, CO(2)-fixing subunit" /protein_id="NP_459528.1" /db_xref="GeneID:1252053" /translation="MKQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPTAVPVQQS VITAEIERWPETALTRELARHPAFVNRDVFPIIADRLTQKQLFDKLGLATAPWQLLTS TDEWSGIFDRLGELAIIKRRVGGYDGRGQWRLRADETGQLPDDCYGECIVERGIHFSG EVSLVGARAHDGSTVFYPLTHNLHQDGILRTSVAFPQANAEQQEQAESMLSAIMQALN YVGVMAMECFITPEGLLINELAPRVHNSGHWTQNGASISQFELHLRAITGLPLPAPVI NAPSVMINLIGSELNYDWLKLPLVHLHWYDKAVRPGRKVGHLNLTDSDTSRLSATLEA LSPLLPGEYASGIIWAQSKLK" misc_feature complement(596112..597122) /gene="purK" /locus_tag="STM0533" /note="phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed; Region: PRK06019" /db_xref="CDD:235674" gene complement(597119..597717) /gene="purE" /locus_tag="STM0534" /db_xref="GeneID:1252054" CDS complement(597119..597628) /gene="purE" /locus_tag="STM0534" /EC_number="4.1.1.21" /note="similar to E. coli phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit (AAC73625.1); Blastp hit to AAC73625.1 (169 aa), 96% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole carboxylase = AIR carboxylase, catalytic subunit" /protein_id="NP_459529.1" /db_xref="GeneID:1252054" /translation="MSSRNNPARVAIVMGSKSDWATMQFAAEIFEILDVPHHVEVVSA HRTPDKLFSFAETAEENGYQVIIAGAGGAAHLPGMIAAKTLVPVLGVPVQSAALSGVD SLYSIVQMPRGIPVGTLAIGKAGAANAALLAAQILAQHDAELHQRIADWRKAQTDEVL ENPDPRGTL" misc_feature complement(597131..597607) /gene="purE" /locus_tag="STM0534" /note="Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]; Region: PurE; COG0041" /db_xref="CDD:439811" regulatory complement(597129..597134) /regulatory_class="ribosome_binding_site" /gene="purE" /locus_tag="STM0534" /note="putative RBS for purK; RegulonDB:STMS1H000866" regulatory complement(597640..597645) /regulatory_class="ribosome_binding_site" /gene="purE" /locus_tag="STM0534" /note="putative RBS for purE; RegulonDB:STMS1H000867" regulatory complement(597693..597701) /regulatory_class="minus_10_signal" /gene="purE" /locus_tag="STM0534" /note="putative -10_signal for purE; RegulonDB:STMLTH004684" protein_bind complement(597697..597713) /gene="purE" /locus_tag="STM0534" /note="putative binding site for PurR, RegulonDB: STMS1H000351" /bound_moiety="PurR" regulatory complement(597709..597717) /regulatory_class="minus_35_signal" /gene="purE" /locus_tag="STM0534" /note="putative -35_signal for purE; RegulonDB:STMLTH004684" gene complement(597746..598468) /gene="lpxH" /locus_tag="STM0535" /db_xref="GeneID:1252055" CDS complement(597746..598468) /gene="lpxH" /locus_tag="STM0535" /note="similar to E. coli orf, hypothetical protein (AAC73626.1); Blastp hit to AAC73626.1 (240 aa), 84% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="UDP-2,3-diacylglucosamine hydrolase" /protein_id="NP_459530.1" /db_xref="GeneID:1252055" /translation="MATLFIADLHLQTEEPAIVAGFLRFLAVEARQADALYILGDLFE AWIGDDDPNPLHREMAVAIKSLVDSGVPCFFIHGNRDFLIGKRFARESGMILLPQEKV LDLYGRNVLIMHGDTLCTDDAGYQAFRAKVHNPWVQRLFLTLPLFIRRRIAARMRAGS KAANSSKSLDIMDVNAQTVVAEMEKHRVQWLIHGHTHRPAVHELSANDQPAFRVVLGA WHHEGSMVKVTPDNVELIAFPL" misc_feature complement(597749..598468) /gene="lpxH" /locus_tag="STM0535" /note="UDP-2,3-diacylglucosamine hydrolase; Provisional; Region: PRK05340" /db_xref="CDD:235420" misc_feature complement(order(597878..597880,597884..597886, 598127..598129,598229..598234,598346..598348, 598439..598441,598445..598447)) /gene="lpxH" /locus_tag="STM0535" /note="putative active site [active]" /db_xref="CDD:277343" misc_feature complement(order(597878..597880,597884..597886, 598127..598129,598232..598234,598346..598348, 598439..598441,598445..598447)) /gene="lpxH" /locus_tag="STM0535" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:277343" gene complement(598471..598977) /gene="ppiB" /locus_tag="STM0536" /db_xref="GeneID:1252056" CDS complement(598471..598965) /gene="ppiB" /locus_tag="STM0536" /EC_number="5.2.1.8" /note="similar to E. coli peptidyl-prolyl cis-trans isomerase B (rotamase B) (AAC73627.1); Blastp hit to AAC73627.1 (164 aa), 97% identity in aa 1 - 164" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase B (rotamase B)" /protein_id="NP_459531.1" /db_xref="GeneID:1252056" /translation="MVTFHTNHGDIVIKTFDDKAPETVKNFLDYCREGFYNNTIFHRV INGFMIQGGGFEPGMKQKATKEAIKNEANNGLKNTRGTLAMARTQAPHSATAQFFINV ADNDFLNFSGESLQGWGYCVFAEVVEGMDVVDKIKGVATGRSGMHQDVPKEDVIIENV TVSE" misc_feature complement(598474..598965) /gene="ppiB" /locus_tag="STM0536" /note="peptidylprolyl isomerase B; Region: PRK10791" /db_xref="CDD:182734" misc_feature complement(order(598606..598608,598642..598647, 598669..598671,598693..598710,598813..598815, 598819..598824,598831..598833,598837..598839)) /gene="ppiB" /locus_tag="STM0536" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238901" regulatory complement(598972..598977) /regulatory_class="ribosome_binding_site" /gene="ppiB" /locus_tag="STM0536" /note="putative RBS for ppiB; RegulonDB:STMS1H000868" gene 599126..600523 /gene="cysS" /locus_tag="STM0537" /db_xref="GeneID:1252057" regulatory 599126..599131 /regulatory_class="ribosome_binding_site" /gene="cysS" /locus_tag="STM0537" /note="putative RBS for cysS; RegulonDB:STMS1H000869" CDS 599138..600523 /gene="cysS" /locus_tag="STM0537" /EC_number="6.1.1.16" /note="similar to E. coli cysteine tRNA synthetase (AAC73628.1); Blastp hit to AAC73628.1 (461 aa), 94% identity in aa 1 - 461" /codon_start=1 /transl_table=11 /product="cysteine tRNA synthetase" /protein_id="NP_459532.1" /db_xref="GeneID:1252057" /translation="MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTF VAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVALVDRMIAEMHQDFDA LNILRPDSEPRATHHIQEIIELTRTLIEKGHAYVADNGDVMFDVPTDPTYGQLSRQDL EQLQAGARVDVVDVKRNPMDFVLWKMSKEGEPSWPSPWGEGRPGWHIECSAMNCKQLG NHFDIHGGGSDLMFPHHENEIAQSTCAHDGEYVNYWMHSGMVMVDREKMSKSLGNFFT VRDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQARASLERLYTALRGTDKSAAPAG GEAFEARFVEAMNDDFNTPEAYSVLFDMAREVNRLKGEDMTAANAMASHLRKISGVLG LLEQEPDVFLQSGAQADDGEVAEIEALIQQRLDARKAKDWAAADAARDRLAEMGIILE DGPQGTTWRRK" misc_feature 599138..600520 /gene="cysS" /locus_tag="STM0537" /note="Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: CysS; COG0215" /db_xref="CDD:439985" gene complement(600567..601395) /locus_tag="STM0538" /db_xref="GeneID:1252058" CDS complement(600567..601391) /locus_tag="STM0538" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_459533.1" /db_xref="GeneID:1252058" /translation="MKRFAFALWLSAISLNAYADSANCHQKANTPESIAATMDQALQL KQQLNSQPDPVVILVRQGQDMSSRHLTWSHAGYAMRQPNGDWRVYHNLNTCGTAESAL YIQGLYEFLADDLVNQSIAVLRPRSDIATALQTLLHSAIKLNLFHSPRYNLIAWPFSG PYQNSNGWLLEVFARANDAQVWSRNDARRWLQLQGYQPSIVSAGTFERLGAKLFTPNV FTDDQPAELLRKGNVGLNSGDSVIRFIAHYSRAIPGCEHQNLGESVCVYLSPGAKK" misc_feature complement(600573..601391) /locus_tag="STM0538" /note="Uncharacterized conserved protein, DUF2145 domain [Function unknown]; Region: COG4727" /db_xref="CDD:443762" gene complement(601388..601832) /locus_tag="STM0539" /db_xref="GeneID:1252059" CDS complement(601388..601825) /locus_tag="STM0539" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459534.1" /db_xref="GeneID:1252059" /translation="MNKMTFAAAVICFSFSHASYSEEMSATGWYAASSAVVSVGSSAL VSGIILSPVLLPLNLSIGSVVENKKQKTALLTTKSPDNKDIKMQVPLHVVKEGNLKAG DKVTLEKTQEGTGAYLKKEGKVLAHMVNQDDAGLSSNQTVPAK" misc_feature complement(601400..601822) /locus_tag="STM0539" /note="STM0539 family protein; Region: STM0539_fam; NF033820" /db_xref="CDD:411393" regulatory complement(601390..601395) /regulatory_class="ribosome_binding_site" /locus_tag="STM0539" /note="putative RBS for STM0538; RegulonDB:STMS1H000870" gene complement(601818..602363) /gene="ybcI" /locus_tag="STM0540" /db_xref="GeneID:1252060" CDS complement(601818..602363) /gene="ybcI" /locus_tag="STM0540" /note="similar to E. coli orf, hypothetical protein (AAC73629.1); Blastp hit to AAC73629.1 (173 aa), 86% identity in aa 1 - 169" /codon_start=1 /transl_table=11 /product="putative membrane-bound metal-dependent hydrolases" /protein_id="NP_459535.1" /db_xref="GeneID:1252060" /translation="MPTVITHAAVPLCFGAGLGLKVIPPRLLFAGVVLAMLPDADVLA FKFGVAYGNVFGHRGFTHSLLFAFVLPLLCVLAGRRWFRAGQVRCWLFLTVSLLSHSL LDSITTGGKGVGWLWPWSDERFFAPWQVIKVAPFALSSYITPYGHQVILSELLWVWLP GSILVLFLWVLKTHIKRNQYE" misc_feature complement(601857..602351) /gene="ybcI" /locus_tag="STM0540" /note="Membrane-bound metal-dependent hydrolase YbcI, DUF457 family [General function prediction only]; Region: YbcI; COG1988" /db_xref="CDD:441591" regulatory complement(601827..601832) /regulatory_class="ribosome_binding_site" /locus_tag="STM0539" /note="putative RBS for STM0539; RegulonDB:STMS1H000871" gene complement(602491..602715) /gene="ybcJ" /locus_tag="STM0541" /db_xref="GeneID:1252061" CDS complement(602491..602703) /gene="ybcJ" /locus_tag="STM0541" /note="similar to E. coli orf, hypothetical protein (AAC73630.1); Blastp hit to AAC73630.1 (77 aa), 92% identity in aa 8 - 77" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459536.1" /db_xref="GeneID:1252061" /translation="MATFSLGKHPHVELCDLLKLEGWSESGAQAKIAIADGLVKVDGA VETRKRCKIVAGQTVSFEGQSVNVVA" misc_feature complement(602494..602703) /gene="ybcJ" /locus_tag="STM0541" /note="ribosome-associated protein YbcJ; Region: PRK11507" /db_xref="CDD:183166" misc_feature complement(order(602542..602544,602548..602571, 602590..602592,602596..602601,602608..602613, 602617..602622,602626..602628)) /gene="ybcJ" /locus_tag="STM0541" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:238095" gene complement(602705..603588) /gene="folD" /locus_tag="STM0542" /db_xref="GeneID:1252062" CDS complement(602705..603571) /gene="folD" /locus_tag="STM0542" /EC_number="1.5.1.5" /EC_number="3.5.4.9" /note="bifunctional; similar to E. coli 5,10-methylene-tetrahydrofolate dehydrogenase; 5,10-methylene-tetrahydrofolate cyclohydrolase (AAC73631.1); Blastp hit to AAC73631.1 (288 aa), 95% identity in aa 1 - 286" /codon_start=1 /transl_table=11 /product="5,10-methylene-tetrahydrofolate cyclohydrolase" /protein_id="NP_459537.1" /db_xref="GeneID:1252062" /translation="MAAKIIDGKTIAQQVRSEVAQKVQARVAAGLRAPGLAVVLVGSN PASQIYVASKRKACDEVGFVSRSYDLPETTSEAELLALIDTLNADNTIDGILVQLPLP AGIDNVKVLERIAPDKDVDGFHPYNVGRLCQRAPRLRPCTPRGIVTLLERYNIDTYGL NAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKDLRHHVEHADLLIVAVGKPGFIPG EWIKEGAIVIDVGINRLENGKVVGDVVFDEAAARASYITPVPGGVGPMTVATLIENTL QACIEYHDPQGK" misc_feature complement(602717..603571) /gene="folD" /locus_tag="STM0542" /note="bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD; Region: PRK10792" /db_xref="CDD:236760" regulatory complement(602710..602715) /regulatory_class="ribosome_binding_site" /gene="ybcJ" /locus_tag="STM0541" /note="putative RBS for ybcJ; RegulonDB:STMS1H000872" regulatory complement(603583..603588) /regulatory_class="ribosome_binding_site" /gene="folD" /locus_tag="STM0542" /note="putative RBS for folD; RegulonDB:STMS1H000873" gene 604107..604675 /gene="fimA" /locus_tag="STM0543" /db_xref="GeneID:1252063" regulatory 604107..604112 /regulatory_class="ribosome_binding_site" /gene="fimA" /locus_tag="STM0543" /note="putative RBS for fimA; RegulonDB:STMS1H000874" CDS 604118..604675 /gene="fimA" /locus_tag="STM0543" /note="type-1 fimbrial protein, a chain precursor (TYPE-1A PILIN). (SW:FM1A_SALTY)" /codon_start=1 /transl_table=11 /product="major type 1 subunit fimbrin (pilin)" /protein_id="NP_459538.3" /db_xref="GeneID:1252063" /translation="MKHKLMTSTIASLMFVAGAAVAADPTPVSVSGGTIHFEGKLVNA ACAVSTKSADQTVTLGQYRTASFTAIGNTTAQVPFSIVLNDCDPKVAANAAVAFSGQA DNTNPNLLAVSSADNSTTATGVGIEILDNTSSPLKPDGATFSAKQSLVEGTNTLRFTA RYKATAAATTPGQANADATFIMKYE" misc_feature 604118..604672 /gene="fimA" /locus_tag="STM0543" /note="type 1 fimbrial protein subunit FimA; Region: PRK15194" /db_xref="CDD:237920" gene 604747..605284 /gene="fimI" /locus_tag="STM0544" /db_xref="GeneID:1252064" regulatory 604747..604752 /regulatory_class="ribosome_binding_site" /gene="fimI" /locus_tag="STM0544" /note="putative RBS for fimI; RegulonDB:STMS1H000875" CDS 604751..605284 /gene="fimI" /locus_tag="STM0544" /note="fimbrin-like protein FIMI. (SW:FIMI_SALTY)" /codon_start=1 /transl_table=11 /product="fimbrial protein internal segment" /protein_id="NP_459539.1" /db_xref="GeneID:1252064" /translation="MIRKGAALAGLVLMSPVIAQPVMVESGRVHLRGQLVNGGCAVAT ESQNLRVLMGQYRTNAFTGPGSFAPVSVPFSLRLISCSAEVWRHVGIAFAGVTPAEDP HVFLASGEGIGNAGIGLALFDDQQRQIIPNTLPLHYTPILTSEMTLHFTARYRAISEN MTPGRIHSEVWFTLVYP" misc_feature 604751..605281 /gene="fimI" /locus_tag="STM0544" /note="type 1 fimbrial protein subunit FimI; Region: PRK15200" /db_xref="CDD:185122" gene 605313..606020 /gene="fimC" /locus_tag="STM0545" /db_xref="GeneID:1252065" regulatory 605313..605318 /regulatory_class="ribosome_binding_site" /gene="fimC" /locus_tag="STM0545" /note="putative RBS for fimC; RegulonDB:STMS1H000876" CDS 605328..606020 /gene="fimC" /locus_tag="STM0545" /note="chaperone protein FIMC precursor. (SW:FIMC_SALTY)" /codon_start=1 /transl_table=11 /product="periplasmic chaperone, required for type 1 fimbriae" /protein_id="NP_459540.1" /db_xref="GeneID:1252065" /translation="MLNSIKVGFIVLLTLFTSLNVQAAGGIALGATRVIYPSAAKQTS LAISNSDTQERYLVNSWIENNAGQKEKTFIVTPPLFVSEPKSENTLRIIYAGQPLPGD RESLFWMNVKAIPSVDKSHIEGKNVLQLAILSRIKLFVRPANLPQTPEDAPTLLKFSR VGNHLKITNPSAYYLTLVNISVGAKKIDNVMIAPKSDMQIPLPTGAQGNVTFQSVNDY GALTSATTASLG" misc_feature 605328..606014 /gene="fimC" /locus_tag="STM0545" /note="molecular chaperone FimC; Region: PRK15195" /db_xref="CDD:185117" gene 606039..608663 /gene="fimD" /locus_tag="STM0546" /db_xref="GeneID:1252066" regulatory 606039..606044 /regulatory_class="ribosome_binding_site" /gene="fimD" /locus_tag="STM0546" /note="putative RBS for fimD; RegulonDB:STMS1H000877" CDS 606051..608663 /gene="fimD" /locus_tag="STM0546" /note="outer membrane usher protein FIMD precursor. (SW:FIMD_SALTY)" /codon_start=1 /transl_table=11 /product="outer membrane usher protein" /protein_id="NP_459541.1" /db_xref="GeneID:1252066" /translation="MKKTTWFAGRFPGYVSPLSSVALSVLAALCPLTSRGESYFNPAF LSADTASVADLSRFEKGNHQPPGIYRVDIWRNDEFVATQDIRFEAGAVGTGDKSGGLM PCFTPEWIKRLGVNTAAFPVSDKGVDTTCIHLPEKIPGAEVAFDFASMRLNISLPQAS LLNSARGYIPPEEWDEGIPAALINYSFTGSRGTDSDSYFLSLLSGLNYGPWRLRNNGA WNYSKGDGYHSQRWNNIGTWVQRAIIPLKSELVMGDSNTGNDVFDSVGFRGARLYSSD NMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPGAFAITDLNPTSSSGDLE VTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFRSGNSQQSSPFFFQGTVIAG LPAGLTAYGGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHARSQLADDSTHQGQSLRF LYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYDYEYDSDGRRHKVPVAQSY HNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQLGYASGWQGISYS LSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATFNANRNRDGDNS WQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGSASASWQATYGTLGVGYNYDRDQHDYN WQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDWRGYAVMPYATV YRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLGGRPLP FGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDSLKQ AITIASATCIRPAS" misc_feature 606051..608660 /gene="fimD" /locus_tag="STM0546" /note="outer membrane usher protein FimD; Region: PRK15198" /db_xref="CDD:185120" gene 608664..609685 /gene="fimH" /locus_tag="STM0547" /db_xref="GeneID:1252067" regulatory 608664..608669 /regulatory_class="ribosome_binding_site" /gene="fimH" /locus_tag="STM0547" /note="putative RBS for fimH; RegulonDB:STMS1H000878" CDS 608678..609685 /gene="fimH" /locus_tag="STM0547" /note="FIMH protein precursor. (SW:FIMH_SALTY)" /codon_start=1 /transl_table=11 /product="minor fimbrial subunit" /protein_id="NP_459542.1" /db_xref="GeneID:1252067" /translation="MKIYSALLLAGTALFFTHPALATVCRNSNGTATDIFYDLSDVFT SGNNQPGQVVTLPEKSGWVGVNATCPAGTTVNYTYRSYVSELPVQSTEGNFKYLKLND YLLGAMSITDSVAGVFYPPRNYILMGVDYNVSQQKPFGVQDSKLVFKLKVIRPFINMV TIPRQTMFTVYVTTSTGDALSTPVYTISYSGKVEVPQNCEVNAGQVVEFDFGDIGASL FSQAGAGNRPQGVTPQTKTIAIKCTNVAAQAYLSMRLEAEKASGQAMVSDNPDLGFVV ANSNGTPLTPNNLSSKIPFHLDDNAAARVGIRAWPISVTGIKPAEGPFTARGYLRVDY D" misc_feature 608678..609682 /gene="fimH" /locus_tag="STM0547" /note="type 1 fimbrin D-mannose specific adhesin FimH; Region: fimH; PRK15199" /db_xref="CDD:237921" gene 609684..610213 /gene="fimF" /locus_tag="STM0548" /db_xref="GeneID:1252068" regulatory 609684..609689 /regulatory_class="ribosome_binding_site" /gene="fimF" /locus_tag="STM0548" /note="putative RBS for fimF; RegulonDB:STMS1H000879" CDS 609695..610213 /gene="fimF" /locus_tag="STM0548" /note="fimbrial-like protein FIMF precursor. (SW:FIMF_SALTY)" /codon_start=1 /transl_table=11 /product="putative fimbrial protein" /protein_id="NP_459543.1" /db_xref="GeneID:1252068" /translation="MILRRVFIAIGCVLFSPLSQANSSLGEVNIELRGNVVDFTCAVV AGDSNKSVNLGTWPTKQLHAAGDATQPVAFSLKLEGCPPGSASITFSGTPAPGTALLA LADTAMAQKLAIEIRDGDQRRLPLEQASKAVDIDNNGNATLKFYANYIALADGVQPGL ANADATFLINYN" misc_feature 609701..610210 /gene="fimF" /locus_tag="STM0548" /note="fimbriae assembly protein; Region: PRK09934" /db_xref="CDD:182153" gene complement(610259..610904) /gene="fimZ" /locus_tag="STM0549" /db_xref="GeneID:1252069" CDS complement(610259..610891) /gene="fimZ" /locus_tag="STM0549" /note="putative transcriptional regulator (LuxR/UhpA family); fimbriae Z protein. (SW:FIMZ_SALTY)" /codon_start=1 /transl_table=11 /product="fimbrial protein Z" /protein_id="NP_459544.1" /db_xref="GeneID:1252069" /translation="MKPASVIIMDEHPIVRMSIEVLLGKNSNIQVVLKTDDSRTAIEY LRTYPVDLVILDIELPGTDGFTLLKRIKSIQEHTRILFLSSKSEAFYAGRAIRAGANG FVSKRKDLNDIYNAVKMILSGYSFFPSETLNFISNTRTPKGGHHDMPLSNREVTVLRY LANGMSNKEIAEQLLLSNKTISAHKANIFSKLGLHSIVELIDYAKSHELL" misc_feature complement(610262..610891) /gene="fimZ" /locus_tag="STM0549" /note="fimbriae biosynthesis transcriptional regulator FimZ; Region: PRK09935" /db_xref="CDD:182154" regulatory complement(610899..610904) /regulatory_class="ribosome_binding_site" /gene="fimZ" /locus_tag="STM0549" /note="putative RBS for fimZ; RegulonDB:STMS1H000880" gene complement(611495..612223) /gene="fimY" /locus_tag="STM0550" /db_xref="GeneID:1252070" CDS complement(611495..612217) /gene="fimY" /locus_tag="STM0550" /note="fimbriae Y protein. (SW:FIMY_SALTY)" /codon_start=1 /transl_table=11 /product="putative regulatory protein" /protein_id="NP_459545.1" /db_xref="GeneID:1252070" /translation="MRSVPRRERHRRLRNAKDCACRYHSPTPQIFDRLELLNQQLNYA LPVGIISQAIITTDNYLGYSLSHYLFSGKRTAAFRSLDDISLWIEKGSLRQLIVDMEA LPVSCIEALNQLRALSWQQSDIQIYLLVSDKTSAITQFIRMAGRFFVLSRRQNLASVR EALLSASKPRLSESFSRTDWLMIETLAQGASLKEIARQQSVPYHRVVYRLKQLITLLN LPHRQSFLRLIQQLNVTFHDIF" regulatory complement(612218..612223) /regulatory_class="ribosome_binding_site" /gene="fimY" /locus_tag="STM0550" /note="putative RBS for fimY; RegulonDB:STMS1H000881" gene complement(612236..612555) /locus_tag="STM0551" /db_xref="GeneID:1252071" CDS complement(612236..612547) /locus_tag="STM0551" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase domain 0" /protein_id="NP_459546.1" /db_xref="GeneID:1252071" /translation="MVAQGILLKERINPPHLASSPTRHSYLNSELLKSEPIVNLSTAQ LIGYEVLTQLPSEHDSEVFFQQLMLMEGIETSEQRSIAFYAGATMEQGYLWPAILPDI Y" regulatory complement(612550..612555) /regulatory_class="ribosome_binding_site" /locus_tag="STM0551" /note="putative RBS for STM0551; RegulonDB:STMS1H000882" gene complement(612709..613311) /gene="fimW" /locus_tag="STM0552" /db_xref="GeneID:1252072" CDS complement(612709..613305) /gene="fimW" /locus_tag="STM0552" /note="fimbriae W protein. (SW:FIMW_SALTY)" /codon_start=1 /transl_table=11 /product="putative fimbrial protein" /protein_id="NP_459547.1" /db_xref="GeneID:1252072" /translation="MLRIAIKEQNSHFEHGLKIIMTRLANQWQQKIDFLPPEEIDNAD IAFLALDDDWFSAGCYQIPMHTQHQLRAIICNKCDKEKLMFRPCLYMLPHIYREDDVE EITRKMILILHKRALRHSVPSGICHYCTTRHFSVTERHLLKLIASGYHLSETAALLSL SEEQTKSLRRSIMRKLHVKTEQQFLKYIRVNLHFLLSK" misc_feature complement(612712..613305) /gene="fimW" /locus_tag="STM0552" /note="fimbriae biosynthesis transcriptional regulator FimW; Region: PRK15201" /db_xref="CDD:185123" regulatory complement(613306..613311) /regulatory_class="ribosome_binding_site" /gene="fimW" /locus_tag="STM0552" /note="putative RBS for fimW; RegulonDB:STMS1H000883" gene 613570..613643 /gene="argU" /locus_tag="STM0553" /db_xref="GeneID:1252073" tRNA 613570..613643 /gene="argU" /locus_tag="STM0553" /product="tRNA-Arg" /db_xref="GeneID:1252073" gene complement(613596..613797) /locus_tag="STM0554" /db_xref="GeneID:1252074" CDS complement(613596..613784) /locus_tag="STM0554" /note="similar to E. coli prophage DLP12 integrase (AAC73638.1); Blastp hit to AAC73638.1 (387 aa), 80% identity in aa 345 - 386" /codon_start=1 /transl_table=11 /product="homology to integrase protein of phage" /protein_id="NP_459548.1" /db_xref="GeneID:1252074" /translation="MIHRYAHLAPNHLTEHARKIDDIFGDDVPNMSHMENKEEIKKRN TLIYKWRALQDSNLRPTA" gene complement(613753..614167) /locus_tag="STM0555" /note="pseudogene; frameshift relative to E. coli IS3 putative transposase (GB:AAC75150.1)" /pseudo /db_xref="GeneID:2673757" regulatory complement(613792..613797) /regulatory_class="ribosome_binding_site" /locus_tag="STM0554" /note="putative RBS for STM0554; RegulonDB:STMS1H000885" gene complement(614202..614427) /locus_tag="STM0556" /db_xref="GeneID:1252076" CDS complement(614202..614420) /locus_tag="STM0556" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_447008.1" /db_xref="GeneID:1252076" /translation="MSGKRYPEEFKIEAVRQVVERGHSVSSAATHLDITTHSLYARIK KYGSNSSTNKEIKSSQMIRPESADSRKS" misc_feature complement(<614283..614411) /locus_tag="STM0556" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" regulatory complement(614422..614427) /regulatory_class="ribosome_binding_site" /locus_tag="STM0556" /note="putative RBS for STM0556; RegulonDB:STMS1H000887" gene complement(614807..616459) /locus_tag="STM0557" /db_xref="GeneID:1252077" CDS complement(614807..616459) /locus_tag="STM0557" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459550.1" /db_xref="GeneID:1252077" /translation="MRRKMVNNRLKMVIAILIVFSLVYSIGFITPMNSDDYTYALREL SLSSVKMHYLGWSGRVVSDTISTSLLKFFSPHIYNAINSAALTLMVLCWTMIPATLTK SSPSPYVMIFLFFLYFVANPALGQTNFWLVGSANYLWTNMFIAIYILISIYLSNGKKS NLILFVYAISSIFAGCSNENTSLVVVLISVAYFFIMNRNKYLLIGVFGSAIGAGVLLL APGNLSRASTIQDWYNQPLAWRVLEHFSERLPSAMGAYWQVYIAFIILLISVVLSRNS SSKLMFGSFLFMLGAIAANVAFLASPAMPSRALNGALCFMILSISFVAHSAFTKFNKA SIYLSVTTYAMAFLYFIPSYILYYSSIKSISKQTEIREEIIDRAKHNKQDQAIIPDYY FPPVLHAGPSLDTFNSEAMSRYYGIDLKITAPGFFDYSRAFNFKPLNINAKICNNVYI KSLWIYKQQMGIKTFVIFEFNKNPADSLDENTAMFISFKTKDGKIINADVDKKTFQID GRWLSGRAINGIDSNELESITSGTWDVRTGARTNENITEIIK" misc_feature complement(615206..616447) /locus_tag="STM0557" /note="Family of unknown function (DUF6056); Region: DUF6056; pfam19528" /db_xref="CDD:437360" gene complement(616440..617378) /gene="yfdH" /locus_tag="STM0558" /db_xref="GeneID:1252078" CDS complement(616440..617366) /gene="yfdH" /locus_tag="STM0558" /note="similar to E. coli putative glycan biosynthesis enzyme (AAC75410.1); Blastp hit to AAC75410.1 (306 aa), 88% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="putative glycosyltransferase" /protein_id="NP_459551.1" /db_xref="GeneID:1252078" /translation="MKISLVVPVFNEEATIPIFYKTVREFEELKPYEVEIVFINDGSK DATESIINKIAASDPLVIPLSFTRNFGKEPALFAGLDHATGDAVIPIDVDLQDPIEVI PHLIEKWQAGADMVLAKRSDRSTDGRMKRKTAEWFYKLHNKISNPKIEENVGDFRLMS REVVENIKQMPERNLFMKGVLSWVGGKTDVVEYARAERVAGDSKFNGWKLWNLALEGI TSFSTFPLRIWTYIGLFIAGMSFLYGAWMIIDKLIFGNNVPGYPSLLVSVLFLGGVQL IGIGILGEYIGRIYIETKKRPKYIIKNEKKNG" misc_feature complement(616812..617354) /gene="yfdH" /locus_tag="STM0558" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature complement(order(617085..617087,617337..617339, 617343..617345)) /gene="yfdH" /locus_tag="STM0558" /note="Ligand binding site [active]" /db_xref="CDD:133030" misc_feature complement(order(617085..617090,617244..617246)) /gene="yfdH" /locus_tag="STM0558" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature complement(617085..617093) /gene="yfdH" /locus_tag="STM0558" /note="DXD motif [active]" /db_xref="CDD:133030" gene complement(617363..617725) /gene="rfbI" /locus_tag="STM0559" /db_xref="GeneID:1252079" CDS complement(617363..617725) /gene="rfbI" /locus_tag="STM0559" /note="similar to E. coli orf, hypothetical protein (AAC75409.1); Blastp hit to AAC75409.1 (120 aa), 81% identity in aa 1 - 120" /codon_start=1 /transl_table=11 /product="putative glycosyl translocase" /protein_id="NP_459552.1" /db_xref="GeneID:1252079" /translation="MLKLFAKYTSIGVLNTLIHWGVFAFCVYGMHTHQALANFSGFVI AVSFSFYANARFTFNASTTTLRYMMYVGFMGTLSAVVGWMADKCSLPPLLTLVTFSAI SLICGFIYSKFIVFRDAK" misc_feature complement(617366..617725) /gene="rfbI" /locus_tag="STM0559" /note="Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) [Lipid transport and metabolism]; Region: GtrA; COG2246" /db_xref="CDD:441847" regulatory complement(617373..617378) /regulatory_class="ribosome_binding_site" /gene="rfbI" /locus_tag="STM0559" /note="putative RBS for yfdH; RegulonDB:STMS1H000888" gene complement(618148..618393) /locus_tag="STM0560" /note="pseudogene; in-frame stop following codon 56" /pseudo /db_xref="GeneID:1252080" gene complement(618593..618927) /locus_tag="STM0561" /db_xref="GeneID:1252081" CDS complement(618593..618922) /locus_tag="STM0561" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC73671.1); Blastp hit to AAC73671.1 (480 aa), 74% identity in aa 375 - 479" /codon_start=1 /transl_table=11 /product="sensor protein" /protein_id="NP_459553.1" /db_xref="GeneID:1252081" /translation="MLRRAISNLLSNTMRYTPPGKTITLRIKEADDQIHIIVENPGTP IAPEHLPLLFDRFYRVDPSRQRKGEGSGIGLAIVKSIVTAHRGKISVTSDTRATRFIL TFPKHLR" misc_feature complement(618602..>618922) /locus_tag="STM0561" /note="Cu(+)/Ag(+) sensor histidine kinase; Region: PRK09835" /db_xref="CDD:182101" regulatory complement(618922..618927) /regulatory_class="ribosome_binding_site" /locus_tag="STM0561" /note="putative RBS for STM0561; RegulonDB:STMS1H000890" gene 619026..619210 /locus_tag="STM0562" /db_xref="GeneID:2673759" regulatory 619026..619031 /regulatory_class="ribosome_binding_site" /locus_tag="STM0562" /note="putative RBS for STM0562; RegulonDB:STMS1H000891" CDS 619031..619210 /locus_tag="STM0562" /note="similar to E. coli putative inner membrane component for iron transport (AAC73676.1); Blastp hit to AAC73676.1 (1047 aa), 82% identity in aa 981 - 1044" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_447013.1" /db_xref="GeneID:2673759" /translation="MRPKAMTVAVIIAGLLPVLWGTGAGSEVMSRITAPLLSLFIIPA AYKLMWLRRHRRLAA" misc_feature <619031..619195 /locus_tag="STM0562" /note="AcrB/AcrD/AcrF family; Region: ACR_tran; cl47191" /db_xref="CDD:481531" gene complement(619261..620126) /locus_tag="STM0563" /db_xref="GeneID:1252083" CDS complement(619261..620115) /locus_tag="STM0563" /note="similar to E. coli putative ARAC-type regulatory protein (AAC73408.1); Blastp hit to AAC73408.1 (284 aa), 71% identity in aa 1 - 282" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator (AraC/XylS family)" /protein_id="NP_459555.1" /db_xref="GeneID:1252083" /translation="MDALSRLLTLNAPQGSIDKNCPLGGDWQLPHAAGELSVIRWHTV TQGEAQLEMPTGDAMTLTPGKVVILPQNSAHRLRQSGESPTHIVCGSLRLHTTSRYFL TALPEVLCLAPPPHSPASIWINATILLLQQESERHLPGADVLYSQQCATLFTLAVRDW LSQAGTAKSVLNLLLHPRLGRVILHMLETPAHPWTVETLAQRVHMSRASFAQLFRDVS ATTPLAVLTTLRLQIAAQTLSREVLPVMVIAESVGYASESSFHKAFVREFGCTPGEYR KRVSALGR" misc_feature complement(619264..620115) /locus_tag="STM0563" /note="reactive chlorine-specific transcriptional regulator RclR; Region: chlor_reg_RclR; NF040475" /db_xref="CDD:439702" regulatory complement(620121..620126) /regulatory_class="ribosome_binding_site" /locus_tag="STM0563" /note="putative RBS for STM0563; RegulonDB:STMS1H000892" gene 620318..621656 /locus_tag="STM0564" /db_xref="GeneID:1252084" regulatory 620318..620323 /regulatory_class="ribosome_binding_site" /locus_tag="STM0564" /note="putative RBS for STM0564; RegulonDB:STMS1H000893" CDS 620331..621656 /locus_tag="STM0564" /note="similar to E. coli putative oxidoreductase (AAC73407.1); Blastp hit to AAC73407.1 (450 aa), 74% identity in aa 10 - 450" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_459556.1" /db_xref="GeneID:1252084" /translation="MTQYQALIIGFGKAGKTLAATLAKTGWRVAIIEQSASMFGGTCI NIGCIPTKTLVHDAEREGDFSVAMQRKAAVVNFLRDKNFHNLADLDNVDVIEGRAEFI DNHTLRVFQADGERVLRGEKIFINTGAESVIPAITGLTTTAGVFDSTGLLSLSQRPAR LGILGGGYIGLEFASMFANFGTKVTIFEAAPQFLPREDRDIAQAITRILQEKGVELIL NANVQAVSSKEGAVQVETPEGAHLVDALLVASGRKPATAGLQLQNAGVAVNERGGIIV DDYLRTTADNIWAMGDVTGGLQFTYISLDDFRIVRDGLLGDGKRSTRDRQNVPYSVFM TPPLSRVGLTEEQARASGATVQVVTLPVAAIPRARVMNDTRGVLKAVVDVNTQRIVGV SLLCVDSHEMINIVKTVMDADLPYTVLRDQIFTHPTMSESLNDLFSLIK" misc_feature 620331..621653 /locus_tag="STM0564" /note="reactive chlorine resistance oxidoreductase RclA; Region: chlor_oxi_RclA; NF040477" /db_xref="CDD:439704" gene 621801..622049 /locus_tag="STM0565" /db_xref="GeneID:1252085" regulatory 621801..621806 /regulatory_class="ribosome_binding_site" /locus_tag="STM0565" /note="putative RBS for STM0565; RegulonDB:STMS1H000894" CDS 621813..622049 /locus_tag="STM0565" /note="similar to E. coli orf, hypothetical protein (AAC73406.1); Blastp hit to AAC73406.1 (83 aa), 53% identity in aa 6 - 83" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459557.1" /db_xref="GeneID:1252085" /translation="MLKVTTLIASLLAAPLAFSASAQPLTDVEYISVSAVSATPSMLE DAIARLAQSKQASSWKITSMRIDNTGYATAILYK" misc_feature 621813..622046 /locus_tag="STM0565" /note="reactive chlorine resistance periplasmic protein RclB; Region: peri_RclB; NF040474" /db_xref="CDD:439701" gene 622048..622622 /locus_tag="STM0566" /db_xref="GeneID:1252086" regulatory 622048..622053 /regulatory_class="ribosome_binding_site" /locus_tag="STM0566" /note="putative RBS for STM0566; RegulonDB:STMS1H000895" CDS 622062..622622 /locus_tag="STM0566" /note="similar to E. coli orf, hypothetical protein (AAC73404.1); Blastp hit to AAC73404.1 (200 aa), 84% identity in aa 4 - 188" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459558.1" /db_xref="GeneID:1252086" /translation="MDKYLRLLSQGDRLGLTLIRLSIAIVFIWIGLLKFVPYEADSIT PFVANSPFMSFFYEHPEEYRQHLTHEGELKPEERAWQTANNTYAFSDGLGVVELIIAA LVLANPVSRWLGLAGGVLAFLTPFVTLSFLITTPEVWVMPLGDAHYGFPYLSGAGRLV LKDTLMLAGAVMIMADSARSLLLQRQ" misc_feature 622062..622613 /locus_tag="STM0566" /note="reactive chlorine resistance membrane protein RclC; Region: chlor_memb_RclC; NF040476" /db_xref="CDD:439703" gene complement(622701..623882) /locus_tag="STM0567" /db_xref="GeneID:1252087" CDS complement(622701..623876) /locus_tag="STM0567" /codon_start=1 /transl_table=11 /product="putative ATPase involved in DNA repair" /protein_id="NP_459559.1" /db_xref="GeneID:1252087" /translation="MNKIIKRLEIIKSAIELEDEEIIRQQLIYLKNEPQDAVISAIAQ AIEARRFSDAMQEIAAWLQAQRALSTWQDPSIAASKLELKALEAQLRDLIDKRNARVQ ILDDFNDLYHLRLGPLMSRILELRKQLAVSMQRKQEAEIKRREKDYQSCLQFISQAVD QLATLKQQWTGLNAASREAVGIRQRIQQQTELITALLAEIRELEADFSHQDDSAFRQA QENAEQDYHQYREQQQEAQFRYARDQRLSADERSELKRLWRQASRLCHPDVVADELKE KAHQMMVQLNQARQNADLAAIRALLTQLQSGLEPMMASDRLNNLEHLRHKIRQLRTQI DALLKEITQLETENAWRLASSVADKEAYFSEQERALTEIRNTLEAQVQQVEQELLSG" misc_feature complement(622713..>623663) /locus_tag="STM0567" /note="chromosome segregation protein SMC, common bacterial type; Region: SMC_prok_B; TIGR02168" /db_xref="CDD:274008" regulatory complement(623877..623882) /regulatory_class="ribosome_binding_site" /locus_tag="STM0567" /note="putative RBS for STM0567; RegulonDB:STMS1H000896" gene 624190..625596 /gene="pheP" /locus_tag="STM0568" /db_xref="GeneID:1252088" regulatory 624190..624195 /regulatory_class="ribosome_binding_site" /gene="pheP" /locus_tag="STM0568" /note="putative RBS for pheP; RegulonDB:STMS1H000897" CDS 624202..625596 /gene="pheP" /locus_tag="STM0568" /note="similar to E. coli phenylalanine-specific transport system (AAC73677.1); Blastp hit to AAC73677.1 (458 aa), 92% identity in aa 1 - 458" /codon_start=1 /transl_table=11 /product="APC family, phenylalanene transporter" /protein_id="NP_459560.1" /db_xref="GeneID:1252088" /translation="MKNASTASGASVSDAASKNEPTLQRGLQNRHIQLIALGGAIGTG LFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPVSGSFAHFAWKYWGPF AGFLSGWNYWVMFVLVGMAELTAAGIYMQYWLPDVPTWVWAAAFFIIINAVNLVNVRL YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEHASIDNLWRYNGFFATGWHGLLLS LAVIMFSFGGLELIGITAAEARDPQKSIPKAVNQVVYRILLFYIGSLVVLLALYPWVE VKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGLSVQGNAPK FLTRVSHRGVPVNSLILSGAITSLVVLINYLLPQKAFSLLMALVVATLLLNWIMICLA HLRFRAAMRRKGRETQFKALFYPAGNYLCIAFLALILVLMCTMDDMRLSAILLPVWIV FLFIAFTVLRRKAH" misc_feature 624202..625587 /gene="pheP" /locus_tag="STM0568" /note="phenylalanine transporter; Provisional; Region: PRK10249" /db_xref="CDD:236667" gene complement(625638..626896) /gene="ybdG" /locus_tag="STM0569" /db_xref="GeneID:1252089" CDS complement(625638..626885) /gene="ybdG" /locus_tag="STM0569" /note="similar to E. coli putative transport (AAC73678.1); Blastp hit to AAC73678.1 (415 aa), 88% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="putative transport" /protein_id="NP_459561.1" /db_xref="GeneID:1252089" /translation="MQELISRVEDLAGIEMNHTTSLVVIFGIIFLTAVVVHIILHWIV LRAFEKRASASSRLWLQIITQNKLFHRLAFTLQGIIVNIQAALWLQKGSEAADILTTC AQLWIMTYALLSLFSLLDVIFNLSQKWPAASQLPLKGIFQGIKLIGAIIVGILMISLL IGQSPAILISGLGAMAAVLMLVFKDPILGLVAGIQLSANDMLKLGDWLEMPKYGADGA VIDIGLTTVKVRNWDNTITTIPTWSLVSDSFKNWSGMSASGGRRIKRSINIDATSIHF LDDDEKQRLLTAQLLKPYLTSRHQEIDEWNKQLDAPESALNHRRMTNIGTFRAYLNEY LRHHPRIRKDMTLMVRQLAPDDHGLPIEIYAFTNTVVWLEYESIQADIFDHIFAVVEE FGLRIHQTPTGSDIRALSGTLRH" misc_feature complement(625698..626459) /gene="ybdG" /locus_tag="STM0569" /note="Mechanosensitive ion channel; Region: MS_channel; pfam00924" /db_xref="CDD:459999" regulatory complement(626891..626896) /regulatory_class="ribosome_binding_site" /gene="ybdG" /locus_tag="STM0569" /note="putative RBS for ybdG; RegulonDB:STMS1H000898" gene 627189..629166 /gene="apeE" /locus_tag="STM0570" /db_xref="GeneID:1252090" regulatory 627189..627194 /regulatory_class="ribosome_binding_site" /gene="apeE" /locus_tag="STM0570" /note="putative RBS for apeE; RegulonDB:STMS1H000899" CDS 627196..629166 /gene="apeE" /locus_tag="STM0570" /note="outer membrane esterase (gi|2896133)" /codon_start=1 /transl_table=11 /product="outer membrane N-acetyl phenylalanine beta-naphthyl ester-cleaving esterase" /protein_id="NP_459562.1" /db_xref="GeneID:1252090" /translation="MTQKRTLLKYGILSLALAAPLSACAFDSLTVIGDSLSDTGNNGR WTWDSGQNKLYDEQLAERYGLELSPSSNGGSNYAAGGATATPELNPQDNTADQVRQWL AKTGGKADHNGLYIHWVGGNDLAAAIAQPTMAQQIAGNSATSAAAQVGLLLDAGAGLV VVPNVPDISATPMLLEAVITAGLGAAAPPALKAALDALAEGATPDFASRQQAIRKALL AAAATVSSNPFIQQLLVEQLLAGYEAAAGQASALTDYYNQMEEKGLEQHGGNIARADI NGLFKEILANPQAFGLTNTVGMACPPGVSASACSSAMPGFNASQDYLFADHLHPGPQV HTIIAQYIQSIIAAPVQATYLNQSVQSMAQGSRTTLDSRYQQLRQGENPVGSLGMFGG YSGGYQRYDNNEADGNGNHNNLTVGVDYQLNEQVLLGGLIAGSLDKQHPDDNYRYDAR GFQAAVFSHLRAGQAWLDSDLHFLSAKFSNIQRSITLGALRRVEEGETNGRLWGARLT SGYDFVMVPWLTTGPMLQYAWDYSHVNGYSEKLNTSTSMRFGDQNAHSQVGSAGWRLD LRHSIIHSWAQINYRRQFGDDTYVANGGLKSTALTFSRDGKTQDKNWVDIAIGADFPL SATVSAFAGLSQTAGLSDGNQTRYNVGFSARF" misc_feature 627211..629163 /gene="apeE" /locus_tag="STM0570" /note="Uncharacterized conserved protein YhjY, contains autotransporter beta-barrel domain [General function prediction only]; Region: YhjY; COG5571" /db_xref="CDD:444313" gene 629328..632062 /locus_tag="STM0571" /db_xref="GeneID:1252091" regulatory 629328..629333 /regulatory_class="ribosome_binding_site" /locus_tag="STM0571" /note="putative RBS for STM0571; RegulonDB:STMS1H000900" CDS 629333..632062 /locus_tag="STM0571" /note="unknown (gi|2896134)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459563.1" /db_xref="GeneID:1252091" /translation="MNKESIFRQLELRLAGCSLTADALGAFSAMAIADSLRQKRSIIS HHLNNLHREQRVVKVNSRPVLFLPVEALRRHHRLAVRQGDYASIQALCAERQDSLELL IGAQGSLQESLRQCKAAISYPGAGLPLLLRGPTGTGKSFLARQLWQYAIEQGILPPEA PFTVFNCAEYANNPELLTSKLFGHAKGAFTGADRAVSGLIETSNGGVLFIDEVHRLPP EGQEKLFHFMDNGTWRRLGESSDERSATVRLIFASTEDLEKHFLATFIRRIPVIVKIL PIAERGQYERLAFIHHFFRREAQRLHHDLSLDSEIISQLMQETLEGNVGGLENLIRNI CASAWTFGQRDDGVLEVKAGQLPDRLLMEVPFTVPQTAERIMIYREGGVFPRVSGQHQ EYLRLTENICGLCEELAQENISARTFDKLVYQNLTLYLDALMNKESPRARQDKRLRFI EDVGKAIAAHYDLELNAEFAYLTGRYLTSLPLTPVEASPSVRHVMLRWLEEAPGLAQR VAQKLLDVVNNKYDLLIDTLDRLVVAAIVSNAIDATSGGKVKALIIAHGYSTASSIAG VANRLIGEKIYHAMDMPMEVAFSDVSRAIVDYLQHTDTRAGVMVLIDMGYTKEIADAL LSVIHGPLVVVDNVTTRLALNVASEIALQKNIEQIAEEIVPLNQSRWDVFWPAQKKAR ALLVTCITGIGTAFKFKNLMEKSQLTDFDINIIACEYTRLKNSRMAASLLNQYEVIAV VGTIDPQLAGVPWVGIEELLGEQGYAHLSQLLSGYLNDKQIALINKNMVREFSLHNVV NSLTILNANKTIGHIETIIAEWQSTLGFSFNNNLIISLYVHLSCMIERLVMRNEITHY KNMTEFNERHGEFIAMVNHSFQRLKILYNVALPVAEIGYIHDIFELRIEDFHW" misc_feature 629333..631804 /locus_tag="STM0571" /note="Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms]; Region: PspF; COG1221" /db_xref="CDD:440834" misc_feature 631772..632035 /locus_tag="STM0571" /note="PRD domain; Region: PRD; pfam00874" /db_xref="CDD:459973" gene complement(632190..633188) /locus_tag="STM0572" /db_xref="GeneID:1252092" CDS complement(632190..633176) /locus_tag="STM0572" /note="similar to E. coli putative transport protein (AAC76396.1); Blastp hit to AAC76396.1 (347 aa), 27% identity in aa 42 - 299" /codon_start=1 /transl_table=11 /product="putative phosphosugar isomerases" /protein_id="NP_459564.1" /db_xref="GeneID:1252092" /translation="MSVAHENARRIISDILGKQNIERVWFVGCGGSLTGFWPGKYFLD CEASKLAVGYITSNEFVHATPKALGKNSVVILASQQGNTAETVAAARVAREKGAATIG LVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKAAYSLWLALEILAQTEGYAQYDEL VSAFGRFSDVVHGAQRQVQEDAQRFAAEWKDEKVVYMMGSGPSFGAAHQESICILLEM QWINSASIHSGEYFHGPFEITEPGTPFILLQSSGRTRPLDDRAIRFIERYQGKLQLID ADKLGIQDLSTDVGEYFCGLLHNCVLDVYNLALATARNHPLTTRRYMWKVEY" misc_feature complement(632199..633167) /locus_tag="STM0572" /note="Fructoselysine-6-P-deglycase FrlB or related protein, duplicated sugar isomerase (SIS) domain [Cell wall/membrane/envelope biogenesis]; Region: AgaS; COG2222" /db_xref="CDD:441824" misc_feature complement(632733..633110) /locus_tag="STM0572" /note="A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars; Region: SIS_1; cd05710" /db_xref="CDD:240214" misc_feature complement(order(632943..632945,633081..633083)) /locus_tag="STM0572" /note="putative active site [active]" /db_xref="CDD:240214" regulatory complement(633183..633188) /regulatory_class="ribosome_binding_site" /locus_tag="STM0572" /note="putative RBS for STM0572; RegulonDB:STMS1H000901" gene complement(633243..634290) /locus_tag="STM0573" /db_xref="GeneID:1252093" CDS complement(633243..634286) /locus_tag="STM0573" /note="similar to E. coli L-glutamine:D-fructose-6-phosphate aminotransferase (AAC76752.1); Blastp hit to AAC76752.1 (609 aa), 21% identity in aa 293 - 601" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459565.1" /db_xref="GeneID:1252093" /translation="MNETPLRLLEMLTQTREDLWRAAQALTERGVTRIILTGSGTSYH GALTARTFMQRWCALPVDVCWPFMLDDETLARSGKALVVGISQGGGSLSTLAAMERAR NVGHITASMAGVAPATIDRAADYILTVPCGEETAGAKTKGYHCTVLNLMLLALAVAGQ QQRLDGEQRRSLLLRMEKTFNHLPALVTASQAWAQTNALALRDSADIRLTGPATLFGT VQEGALKMLETLRCPVSGYEFEEFIHGIYNAFNAQSALIMLDPQPDARQDRLAQILGE WTPSIYRIGPQVENNGLNLNFPFVNDEDFAVFEYIIPLQMLCAILPPQKGINPAIPKD PQFHQKMKSKQEI" misc_feature complement(633300..634286) /locus_tag="STM0573" /note="Fructoselysine-6-P-deglycase FrlB or related protein, duplicated sugar isomerase (SIS) domain [Cell wall/membrane/envelope biogenesis]; Region: AgaS; COG2222" /db_xref="CDD:441824" misc_feature complement(633813..634190) /locus_tag="STM0573" /note="SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal...; Region: SIS_GlmS_GlmD_1; cd05008" /db_xref="CDD:240141" misc_feature complement(order(634008..634010,634074..634076, 634083..634085,634095..634097,634101..634103, 634122..634127,634134..634139,634167..634172)) /locus_tag="STM0573" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:240141" misc_feature complement(order(634023..634031,634161..634166)) /locus_tag="STM0573" /note="active site" /db_xref="CDD:240141" regulatory complement(634285..634290) /regulatory_class="ribosome_binding_site" /locus_tag="STM0573" /note="putative RBS for STM0573; RegulonDB:STMS1H000902" gene complement(634319..635181) /locus_tag="STM0574" /db_xref="GeneID:1252094" CDS complement(634319..635173) /locus_tag="STM0574" /note="similar to E. coli PTS enzyme IID, mannose-specific (AAC74889.1); Blastp hit to AAC74889.1 (286 aa), 37% identity in aa 4 - 284" /codon_start=1 /transl_table=11 /product="putative transport protein, PTS system" /protein_id="NP_459566.1" /db_xref="GeneID:1252094" /translation="MSEVTQTLIDDAQAHSQSESRITARDLRSVFWRSFTLQGSWNYE RQQHMGYAFAMSPALKRIYQDPAELGRALQRHLVLFNTTPHLSTFVFGLSIAMEEENQ RNPDFNEESINAVKTSLMGPLAGIGDSIFWGSLKVIAAGMGIYFAQQGSILGPILALL VYNIPHILCRWYALKLGYRAGTTWLMRLWQSGLMDRVTYIASIVGLMVVGAMTASMID ITTPLSFTAGQTTMKVQDFIDKILPSLLPLLFTLGMYKLIRKGVNINWILLGTVVFGL LASALGLL" misc_feature complement(634352..635128) /locus_tag="STM0574" /note="Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IID component [Carbohydrate transport and metabolism]; Region: ManZ; COG3716" /db_xref="CDD:442930" gene complement(635176..635926) /locus_tag="STM0575" /db_xref="GeneID:1252095" CDS complement(635176..635919) /locus_tag="STM0575" /note="similar to E. coli PTS enzyme IIC, mannose-specific (AAC74888.1); Blastp hit to AAC74888.1 (266 aa), 34% identity in aa 6 - 240" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459567.1" /db_xref="GeneID:1252095" /translation="MLLTATLLGLIAALGILDGRLLGVSMIDRPLVMCALTGLVCGNL HEGILIGATLELIFLGNVAIGAAVPPDVVTGSVLATAFSIMSGRGPEAALTIAIPISM LAQTLGVLVRVVNARFGHMADRYAAQGNTRMVAVMHLGGPTLLYFLSGFLPVFFAILL GSAAVTWFLDAIPAFITNGLVVASKILPALGFALLISMMLSSKLMPYLGLGFLIAAYT KLDIIAIALFAVVLAFIISQFLNTSQQEG" misc_feature complement(635179..635919) /locus_tag="STM0575" /note="Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IIC component [Carbohydrate transport and metabolism]; Region: ManY; COG3715" /db_xref="CDD:442929" regulatory complement(635176..635181) /regulatory_class="ribosome_binding_site" /locus_tag="STM0575" /note="putative RBS for STM0574; RegulonDB:STMS1H000903" regulatory complement(635921..635926) /regulatory_class="ribosome_binding_site" /locus_tag="STM0575" /note="putative RBS for STM0575; RegulonDB:STMS1H000904" gene complement(635934..636410) /locus_tag="STM0576" /db_xref="GeneID:1252096" CDS complement(635934..636404) /locus_tag="STM0576" /note="similar to E. coli PTS enzyme IIAB, mannose-specific (AAC74887.1); Blastp hit to AAC74887.1 (323 aa), 32% identity in aa 163 - 306" /codon_start=1 /transl_table=11 /product="putative transport protein, PTS system" /protein_id="NP_459568.1" /db_xref="GeneID:1252096" /translation="MIKLVRIDYRLLHGQVVFAWTRALDIDHIIVANANAAGDAFVSM SLSLAKPAGVSLDIITVEQAAEKLASGKLDHKKVMVVLGNTAETLAFVEKVPGISVIN YGGIAQKEGAQQFGKAIYLTEQEIADSQALKAKGIRLEMRQVPAHSAELLNDKL" misc_feature complement(635949..636401) /locus_tag="STM0576" /note="PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_man; cd00001" /db_xref="CDD:237975" misc_feature complement(order(636366..636368,636375..636377, 636387..636389)) /locus_tag="STM0576" /note="active site" /db_xref="CDD:237975" misc_feature complement(636366..636368) /locus_tag="STM0576" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:237975" gene complement(636382..636838) /locus_tag="STM0577" /db_xref="GeneID:1252097" CDS complement(636382..636831) /locus_tag="STM0577" /note="similar to E. coli PTS enzyme IIAB, mannose-specific (AAC74887.1); Blastp hit to AAC74887.1 (323 aa), 26% identity in aa 5 - 126" /codon_start=1 /transl_table=11 /product="putative transport protein, PTS system" /protein_id="NP_459569.1" /db_xref="GeneID:1252097" /translation="MRHVYVASHGPFARGLINSLSLLIGDEHGVTPVCAYDGDIVTTE QLEQTLENLIAQANGEEVVVFTDLLGGSINNSAAKVLMRHRHVFVVAGVNMTLLLEFL LCEEESTDAAITYATNAARESIVFINTLITQPSADLQGESHDQISAH" misc_feature complement(636448..636816) /locus_tag="STM0577" /note="Phosphotransferase system, mannose/fructose-specific component IIA [Carbohydrate transport and metabolism]; Region: ManX; COG2893" /db_xref="CDD:442138" regulatory complement(636405..636410) /regulatory_class="ribosome_binding_site" /locus_tag="STM0577" /note="putative RBS for STM0576; RegulonDB:STMS1H000905" regulatory complement(636833..636838) /regulatory_class="ribosome_binding_site" /locus_tag="STM0577" /note="putative RBS for STM0577; RegulonDB:STMS1H000906" gene complement(637031..637695) /gene="nfnB" /locus_tag="STM0578" /db_xref="GeneID:1252098" CDS complement(637031..637684) /gene="nfnB" /locus_tag="STM0578" /EC_number="1.-.-.-" /EC_number="1.5.1.34" /note="oxygen-insensitive NAD(P)H nitroreductase; oxygen-insensitive NAD(P)H nitroreductase. (SW:NFNB_SALTY)" /codon_start=1 /transl_table=11 /product="dihydropteridine reductase" /protein_id="NP_459570.1" /db_xref="GeneID:1252098" /translation="MDIVSVALQRYSTKAFDPSKKLTAEEADKIKTLLQYSPSSTNSQ PWHFIVASTEEGKARVAKSAAGNYTFNERKMLDASHVVVFCAKTAMDDAWLERVVDQE DADGRFATPEAKAANDKGRRFFADMHRVSLKDDHQWMAKQVYLNVGNFLLGVAAMGLD AVPIEGFDAEVLDAEFGLKEKGYTSLVVVPVGHHSVEDFNAGLPKSRLPLETTLTEV" misc_feature complement(637034..637684) /gene="nfnB" /locus_tag="STM0578" /note="oxygen-insensitive NAD(P)H nitroreductase; Region: PRK11053" /db_xref="CDD:182929" misc_feature complement(order(637055..637075,637157..637159, 637187..637192,637214..637219,637226..637231, 637238..637243,637250..637255,637259..637264, 637271..637273,637418..637420,637529..637549, 637553..637555,637559..637561,637565..637567, 637571..637585,637589..637594,637598..637600, 637655..637657,637661..637663,637673..637678)) /gene="nfnB" /locus_tag="STM0578" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:380324" misc_feature complement(order(637064..637066,637070..637072, 637187..637201,637250..637255,637259..637261, 637463..637465,637472..637474,637559..637573, 637643..637645,637649..637657)) /gene="nfnB" /locus_tag="STM0578" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:380324" regulatory complement(637690..637695) /regulatory_class="ribosome_binding_site" /gene="nfnB" /locus_tag="STM0578" /note="putative RBS for nfnB; RegulonDB:STMS1H000907" gene complement(637781..638160) /gene="ybdF" /locus_tag="STM0579" /db_xref="GeneID:1252099" CDS complement(637781..638149) /gene="ybdF" /locus_tag="STM0579" /note="similar to E. coli orf, hypothetical protein (AAC73680.1); Blastp hit to AAC73680.1 (122 aa), 75% identity in aa 1 - 121" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459571.1" /db_xref="GeneID:1252099" /translation="MDGQTLHAWAKRFALELPFTEHCWPFGPQYDVFKVGGKIFMLFT EHHCRPVVNLKSDPQKSLVNQQIYPSIAPGYHMNKKHWISVYAGEDITVSLLNDLIND SWNLVVDGLPKREQLRLRPR" misc_feature complement(637784..638149) /gene="ybdF" /locus_tag="STM0579" /note="MmcQ/YjbR family DNA-binding protein; Region: PRK10250" /db_xref="CDD:182333" gene complement(638149..638735) /locus_tag="STM0580" /db_xref="GeneID:1252100" CDS complement(638149..638730) /locus_tag="STM0580" /codon_start=1 /transl_table=11 /product="putative regulatory protein" /protein_id="NP_459572.1" /db_xref="GeneID:1252100" /translation="MARPKSEDKKQALLEAATQAIAQSGIAASTAVIARNAGVAEGTL FRYFATKDELINTLYLHLKQDLCQSMIMELDRSITDAKMMTRFIWNSYISWGLNHPAR HRAIRQLAVSEKLTKETEQRADDMFPELRDLCHRSVLMVFMSDEYRAFGDGLFLALAE TTMDFAARDPARAGEYIALGFEAMWRALTREEQ" misc_feature complement(638281..638724) /locus_tag="STM0580" /note="DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:440920" regulatory complement(638155..638160) /regulatory_class="ribosome_binding_site" /gene="ybdF" /locus_tag="STM0579" /note="putative RBS for ybdF; RegulonDB:STMS1H000908" regulatory complement(638730..638735) /regulatory_class="ribosome_binding_site" /locus_tag="STM0580" /note="putative RBS for STM0580; RegulonDB:STMS1H000909" gene 639012..639360 /locus_tag="STM0581" /db_xref="GeneID:1252101" regulatory 639012..639017 /regulatory_class="ribosome_binding_site" /locus_tag="STM0581" /note="putative RBS for STM0581; RegulonDB:STMS1H000910" CDS 639019..639360 /locus_tag="STM0581" /note="resistance against oxidative stress protein A (gi|9885772)" /codon_start=1 /transl_table=11 /product="putative regulatory protein" /protein_id="NP_459573.1" /db_xref="GeneID:1252101" /translation="MTISAQVIDTIVEWIDDNLNQPLRIDDIARHAGYSKWHLQRLFM QYKGESLGRYVRERKLKLAARDLLDTDQKVYDICLKYGFDSQQTFTRIFTRTFNLPPG AYRKEKHGRTH" misc_feature 639022..639345 /locus_tag="STM0581" /note="RamA family antibiotic efflux transcriptional regulator; Region: ramA_TF; NF012144" /db_xref="CDD:411085" gene complement(639366..639614) /gene="ybdJ" /locus_tag="STM0582" /db_xref="GeneID:1252102" CDS complement(639366..639614) /gene="ybdJ" /locus_tag="STM0582" /note="similar to E. coli orf, hypothetical protein (AAC73681.1); Blastp hit to AAC73681.1 (82 aa), 85% identity in aa 1 - 82" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459574.1" /db_xref="GeneID:1252102" /translation="MKHPLESLMTAAGILLMALLSSLLLPAPSLGLALAQKLVGIFHL MDLNQLYTLLFCLWFLLLGALEYYVIRFIWRRWFSLAD" misc_feature complement(639378..639611) /gene="ybdJ" /locus_tag="STM0582" /note="Protein of unknown function (DUF1158); Region: DUF1158; pfam06643" /db_xref="CDD:399557" gene complement(639681..640799) /gene="ybdK" /locus_tag="STM0583" /db_xref="GeneID:1252103" CDS complement(639681..640799) /gene="ybdK" /locus_tag="STM0583" /note="similar to E. coli orf, hypothetical protein (AAC73682.1); Blastp hit to AAC73682.1 (372 aa), 84% identity in aa 1 - 371" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459575.1" /db_xref="GeneID:1252103" /translation="MALNDFHVSEPYTLGIELEMQVINPPGYDLSQDSSTLIDAVKPQ LTAGEIKHDITESMLEMATGVCRDIDQAAAQLSAMQHVILQAASEHHLGICGGGTHPF QKWQRQEVCDNERYQRTLENFGYLIQQATVFGQHVHVGCANGDDAIYLLHGLSHFVPH FIALSAASPYMQGADTRFACARLNIFSAFPDNGPMPWVSNWQEFAGLFRRLSYTTMID SIKDLHWDIRPSPAFGTVEVRVMDTPLTLDHAINMAGLIQATAHWLLTERPFKPQEQD YLLYKFNRFQACRYGLEGVLTDAYTGDRRRLADDTLRLLDNVTPSARKLGADSAIDAL RLQVKKGGNEAQYMREFIADGGSLIGLVQKHCEIWAGQ" misc_feature complement(639684..640799) /gene="ybdK" /locus_tag="STM0583" /note="gamma-glutamyl:cysteine ligase; Provisional; Region: PRK13516" /db_xref="CDD:237407" gene complement(640811..641534) /gene="entD" /locus_tag="STM0584" /db_xref="GeneID:1252104" CDS complement(640811..641515) /gene="entD" /locus_tag="STM0584" /note="similar to E. coli enterochelin synthetase, component D (AAC73684.1); Blastp hit to AAC73684.1 (209 aa), 57% identity in aa 4 - 185" /codon_start=1 /transl_table=11 /product="enterochelin synthetase, component D (phoshpantetheinyltransferase)" /protein_id="NP_459576.1" /db_xref="GeneID:1252104" /translation="MLTSHFPLPFAGHRLHIVDFDASSFREHDLLWLPHHDRLRSAGR KRKAEHLAGRIAAVHALREVGVRTVPGMGDKRQPLWPDGLFGSISHCATTALAVISRQ RIGIDIEKIMSQHTATELAPSIIDSDERQILQASLLPFPLALTLAFSAKESVYKAFSD RVTLPGFNSAKVTSLTATHISLHLLPAFAATMAERTVRTEWFQRDNSVITLVSAITRV PHDRSAPASILSAIPR" misc_feature complement(640877..641515) /gene="entD" /locus_tag="STM0584" /note="enterobactin synthase subunit EntD; Region: PRK10251" /db_xref="CDD:182334" regulatory complement(641529..641534) /regulatory_class="ribosome_binding_site" /gene="entD" /locus_tag="STM0584" /note="putative RBS for entD; RegulonDB:STMS1H000911" gene complement(641561..643981) /gene="fepA" /locus_tag="STM0585" /db_xref="GeneID:1252105" CDS complement(641561..643816) /gene="fepA" /locus_tag="STM0585" /note="similar to E. coli outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D (AAC73685.1); Blastp hit to AAC73685.1 (746 aa), 81% identity in aa 1 - 746" /codon_start=1 /transl_table=11 /product="outer membrane porin, receptor for ferric enterobactin (enterochelin) and colicins B and D" /protein_id="NP_459577.1" /db_xref="GeneID:1252105" /translation="MNKKIHSLTLLVNLGIYGATLPVMAEDKTDSAALTNEDTIVVTA AQQNLQAPGVSTITADEIRKNPPARDVSEIIRTMPGVNLTGNSTSGQRGNNRQIDIRG MGPENTLILIDGKPVTSRNSVRLGWRGERDTRGDTAWVPPEMIERIEVLRGPAAARYG NGAAGGVVNIITKKGGSEWHGSWNTYFNAPEHKDEGATKRTNFSLNGPLGGDFSFRLY GNLDKTQADARNINQGHQSERTGSYADTLPAGREGVINKDINGVVRWDFAPLQSLELE AGYSRQGNLYAGDTQNTNTNQLVKDNYGKETNRLYRQNYSLTWNGGWNNGVTTSNWVQ YEHTRNSRMPEGLAGGTEGIFDPKASQKYADADLNDVTLHSEVSLPFDLLVNQNLTLG TEWAQQRMKDQLSNSQTFMGGNIPGYSSTNRSPYSKAEIFSLFAENNMELTDSTMLTP GLRFDHHSIVGDNWSPSLNLSQGLGDDFTLKMGIARAYKAPSLYQTNPNYILYSKGQG CYATGAGTGIGCYMMGNDDLKAETSINKEIGLEFKRDGWLAGVTWFRNDYRNKIEAGT VPLQRINNGKTDVYQWENVPKAVVEGLEGTLNVPVSDTVNWTNNVTYMLQSKNKETGE RLSIIPQYTLNSTLSWQVRQDVSLQSTFTWYGKQEPKKYDYQGNPVTGTDKQAVSPYS IVGLSATWDVTKNVSLTGGVDNLFDKRLWREGNAQTVRDTQTGAYMAGAGAYTYNEPG RTWYMSINTHF" misc_feature complement(641564..643816) /gene="fepA" /locus_tag="STM0585" /note="FepA family TonB-dependent siderophore receptor; Region: PRK13524" /db_xref="CDD:237410" regulatory complement(643822..643827) /regulatory_class="ribosome_binding_site" /gene="fepA" /locus_tag="STM0585" /note="putative RBS for fepA; RegulonDB:STMS1H000912" regulatory complement(643954..643962) /regulatory_class="minus_10_signal" /gene="fepA" /locus_tag="STM0585" /note="putative -10_signal for fepA; RegulonDB:STMLTH004685" regulatory complement(643973..643981) /regulatory_class="minus_35_signal" /gene="fepA" /locus_tag="STM0585" /note="putative -35_signal for fepA; RegulonDB:STMLTH004685" gene 643995..645219 /gene="fes" /locus_tag="STM0586" /db_xref="GeneID:1252106" regulatory 643995..644000 /regulatory_class="ribosome_binding_site" /gene="fes" /locus_tag="STM0586" /note="putative RBS for fes; RegulonDB:STMS1H000913" CDS 644005..645219 /gene="fes" /locus_tag="STM0586" /note="similar to E. coli enterochelin esterase (AAC73686.1); Blastp hit to AAC73686.1 (374 aa), 74% identity in aa 2 - 369" /codon_start=1 /transl_table=11 /product="enterochelin esterase" /protein_id="NP_459578.1" /db_xref="GeneID:1252106" /translation="MKEALATGSEAWWRTKTGPEWIREKDGNYRVTFWWRDPQGNETH SPIRRVWVYITGVTDHHQNAQPQTMARIAGTDVWRWSTALSANWRGSYCFIPTERDDV FAAFAPGETPDRNVLREGWRQLLPQAIADPLNSQSWRGGRGHAVSALEMPDAPLQPGW DRPETPYSPPLMMQWHSERLGNSRRVWILTTGDEAPEERPLAILLDGQFWAENMPVWP ALASLTHQRLLPGAVYLLIDAIDTQHRSQELPCNADFWLAVQQELLPQVRAVTPFSDD AGRTVVAGQSFGGLSALYAGLNWPTRFGCVLSQSGSFWWPHRITPPEGEVITRLKTGA LCARGLRIVLEAGVREPIVFQANQALYAQLNTSQQSIFWRQVDGGHDALCWRGGLTQG LMLLWQPLIDTL" misc_feature 644005..645207 /gene="fes" /locus_tag="STM0586" /note="enterobactin/ferric enterobactin esterase; Provisional; Region: PRK10439" /db_xref="CDD:236695" gene 645242..645468 /gene="ybdZ" /locus_tag="STM0587" /db_xref="GeneID:1252107" regulatory 645242..645247 /regulatory_class="ribosome_binding_site" /gene="ybdZ" /locus_tag="STM0587" /note="putative RBS for ybdZ; RegulonDB:STMS1H000914" CDS 645250..645468 /gene="ybdZ" /locus_tag="STM0587" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459579.1" /db_xref="GeneID:1252107" /translation="MEFSNPFDNPQGQFYILQNAQRQFSLWPAACALPAGWDVVCEPQ SQDACQQWLNTRWTTLNPAHYADKQEAK" misc_feature 645256..645462 /gene="ybdZ" /locus_tag="STM0587" /note="MbtH family protein, regulates adenylation domains of NRPSs [Secondary metabolites biosynthesis, transport and catabolism]; Region: MbtH; COG3251" /db_xref="CDD:442482" gene 645454..649349 /gene="entF" /locus_tag="STM0588" /db_xref="GeneID:1252108" regulatory 645454..645459 /regulatory_class="ribosome_binding_site" /gene="ybdZ" /locus_tag="STM0587" /note="putative RBS for entF; RegulonDB:STMS1H000915" CDS 645465..649349 /gene="entF" /locus_tag="STM0588" /note="similar to E. coli ATP-dependent serine activating enzyme (may be part of enterobactin synthase as component F) (AAC73687.1); Blastp hit to AAC73687.1 (1293 aa), 79% identity in aa 1 - 1293" /codon_start=1 /transl_table=11 /product="enterobactin synthetase, component F (nonribosomal peptide synthetase)" /protein_id="NP_459580.1" /db_xref="GeneID:1252108" /translation="MTQRLPLVAAQPGIWMAEKLSDLPSAWSVAHYVELNGELDAALL AKAVAVGMQQADTLRMRFTEENGEVWQWIDPEHTFGEPPIADLRDQPDPHHAALALMQ ADLRQNLRADSGKPLAFHQLIRIDDTRWYWYQRYHHLLVDGFSFPAITRQIAAIYRAW QSDAPTPESPFTPFADVVEEYQRYRQSEAWQRDGAFWAQQRRELPPPASMSAAPLPGR SASADILRMKLSAPAGAFRQLAAHMPEIPRADLALALVTLWLGRLCGRMDYAAGFIFM RRMGSAALTATGPVLNVLPLAVNLHATEDLPTLAKRLAAQLKKMRRHQRYDAEQIVRD SGRAAGETPLFGPVLNIKVFDYHLDLPGIQAQTHTLATGPVNDLELALFPDENGGLDI ELLANAQRYDDATLSRHALRLMALITQFADNPALRCGDAQMLLAEEQTQLAHLNNTAV TIPAATLSDLVAQQAQKTPEASALADAHYHFTYREMREQVVALAYALRERGVQPGDSV AVALPRSVFLTLALHGIVEAGAAWLPLDTGYPDDRLRMMLEDAQPKLLITTQAQLARF HDIPGMEYLCYSQPLPVSDATPLRLSLPHHTAYIIFTSGSTGRPKGVMVGQTAIVNRL LWMQDHYPLTADDVVAQKTPCSFDVSVWEFFWPFIAGAKLVMAEPEAHRDPLAMQRFF AQYGVTTTHFVPSMLAAFIASLTPASAGKSCASLKRVFCSGEALPTALCREWETLTNA PLHNLYGPTEAAVDVSWYPACGDELAAVDGNSIPIGYPVWNTGLRILDAHMQPVPPGV AGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWLDSGAVEYLGRS DDQLKIRGQRIELGEIDRVMQTLPDVEQAVAHACVFNQAAATGGDARQLVGYLVSHSG LPLDLPALQEKLRQKLPAHMVPVVLLQLASLPLSANGKLDRKALPLPDLAPRVKGRAP QSATEIAVAAAFSRLLGCEINDVESDFFALGGHSLLAMKLAAQLSQTFNRQVTPGQVM VASDVAQLSKLLDTDDDERSRNLGFGPLLPLRESDGPTLFCFHPASGFAWQFSVLSRY LSPSWSIMGIQSPRPAGPMQTATTLDEVCEHHLATLLARQPHGPYYLLGYSLGGTLAQ GIAARLRARGETVAFLGLLDTWPPETQNWREKEANGLNPDVLAEIERERAAFVAAQQG NASDALFTAIEGNYADAVRLLTTAHSVPFDGHATLFVADKTVPEGVSPEQSWSPWIAS LAIYRQPCAHVDIISPSAFETIGPIISELINK" misc_feature 645465..649346 /gene="entF" /locus_tag="STM0588" /note="enterobactin non-ribosomal peptide synthetase EntF; Region: entF; PRK10252" /db_xref="CDD:236668" gene 649586..650735 /gene="fepE" /locus_tag="STM0589" /db_xref="GeneID:1252109" regulatory 649586..649591 /regulatory_class="ribosome_binding_site" /gene="fepE" /locus_tag="STM0589" /note="putative RBS for fepE; RegulonDB:STMS1H000916" CDS 649599..650735 /gene="fepE" /locus_tag="STM0589" /note="similar to E. coli ferric enterobactin (enterochelin) transport (AAC73688.1); Blastp hit to AAC73688.1 (377 aa), 73% identity in aa 1 - 373" /codon_start=1 /transl_table=11 /product="ferric enterobactin (enterochelin) transporter" /protein_id="NP_459581.1" /db_xref="GeneID:1252109" /translation="MPSLNVKQEKNQSFAGYSLPPANSHEIDLFSLIEVLWQAKRRIL ATVFAFACVGLLLSFLLPQKWTSQAIVTPAESVQWQGLERTLTALRVLDMEVSVDRGS VFNLFIKKFSSPSLLEEYLRSSPYVMDQLKGAQIDEQDLHRAIVLLSEKMKAVDSNVG KKNETSLFTSWTLSFTAPTREEAQKVLAGYIQYISDIVVKETLENIRNQLEIKTRYEQ EKLAMDRVRLKNQLDANIQRLHYSLEIANAAGIKRPVYSNGQAVKDDPDFSISLGADG ISRKLEIEKGVTDVAEIDGDLRNRQYHVEQLAAMNVSDVKFTPFKYQLSPSLPVKKDG PGKAIIIILAALIGGMMACGGVLLRHAMVSRKMENALAIDERLV" misc_feature 649599..650732 /gene="fepE" /locus_tag="STM0589" /note="LPS O-antigen length regulator; Provisional; Region: PRK10381" /db_xref="CDD:182422" gene complement(650788..651599) /gene="fepC" /locus_tag="STM0590" /db_xref="GeneID:1252110" CDS complement(650788..651582) /gene="fepC" /locus_tag="STM0590" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of ferric enterobactin transport (AAC73689.1); Blastp hit to AAC73689.1 (271 aa), 92% identity in aa 1 - 263" /codon_start=1 /transl_table=11 /product="enterobactin transporter" /protein_id="NP_459582.1" /db_xref="GeneID:1252110" /translation="MTESVARLRGDQLTLGYGSYTVAKNLNVSIPDGHFTAIIGPNGC GKSTLLRTLSRLMTPVDGHVWLDGEQIQRYASKEVARRIGLLAQNATTPGDITVQELV ARGRYPHQPLFTRWRKEDADAVASAMRATGITSLAAQSVDTLSGGQRQRAWIAMVLAQ ETSIMLLDEPTTWLDISHQIDLLELLSDLNREKGYTLAAVLHDLNQACRYATHLIALR EGNIVAQGAPKEIVTAELIEKIYGLRCMIIDDPVAGTPLVVPLGRR" misc_feature complement(650791..651582) /gene="fepC" /locus_tag="STM0590" /note="iron-enterobactin ABC transporter ATP-binding protein; Region: PRK10253" /db_xref="CDD:182336" gene complement(651579..652584) /gene="fepG" /locus_tag="STM0591" /db_xref="GeneID:1252111" CDS complement(651579..652568) /gene="fepG" /locus_tag="STM0591" /note="ABC superfamily (membrane); similar to E. coli ferric enterobactin transport protein (AAC73690.1); Blastp hit to AAC73690.1 (330 aa), 86% identity in aa 2 - 330" /codon_start=1 /transl_table=11 /product="ferric enterobactin transporter" /protein_id="NP_459583.1" /db_xref="GeneID:1252111" /translation="MFLSRRLIVSCLLLAAGCFAIGLWSLQSGAVPLETGQIIAALLG DAPRNITLVVTEWRLPRVLMALLIGAALGVSGAIFQSLMRNPLGSPDVMGFNTGAWSG VLVAMVLFGQHLTAIALAAMAGGIVTSLIVWLLAWRNGIETFRLIIIGIGIRAMLVAF NTWLLLQASLETALTAGLWNAGSLNGLTWAKTWPSAPLIMVMLTGAALLVRRMRLLEM GDDSACALGVSVERSRLMLMLVAVSLTAAATALAGPISFIALVAPHIARRLSGTARWG LTQSALCGALLLLAADACAQQLFMPYQLPVGVVTVSLGGIYLIVLLIQESRKK" misc_feature complement(651582..652568) /gene="fepG" /locus_tag="STM0591" /note="iron-enterobactin ABC transporter permease; Region: PRK10440" /db_xref="CDD:182463" misc_feature complement(order(651750..651752,651768..651770, 651891..651899,651903..651920,651924..651929, 651933..651941,651945..651950,652311..652319, 652329..652331)) /gene="fepG" /locus_tag="STM0591" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119348" misc_feature complement(order(651603..651605,651612..651617, 651624..651626,651633..651638,651645..651647, 651798..651800,652026..652028,652035..652040, 652074..652076,652080..652085,652092..652094, 652101..652106,652113..652118,652125..652130, 652134..652136,652293..652295,652308..652310, 652314..652316)) /gene="fepG" /locus_tag="STM0591" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature complement(order(651654..651656,651681..651683, 651810..651812,651822..651824,651996..651998, 652074..652076)) /gene="fepG" /locus_tag="STM0591" /note="putative PBP binding regions [active]" /db_xref="CDD:119348" regulatory complement(651594..651599) /regulatory_class="ribosome_binding_site" /gene="fepC" /locus_tag="STM0590" /note="putative RBS for fepC; RegulonDB:STMS1H000917" gene complement(652568..653728) /gene="fepD" /locus_tag="STM0592" /db_xref="GeneID:1252112" CDS complement(652568..653575) /gene="fepD" /locus_tag="STM0592" /note="ABC superfamily (membrane); similar to E. coli ferric enterobactin (enterochelin) transport (AAC73691.1); Blastp hit to AAC73691.1 (334 aa), 88% identity in aa 1 - 333" /codon_start=1 /transl_table=11 /product="ferric enterobactin (enterochelin) transporter" /protein_id="NP_459584.1" /db_xref="GeneID:1252112" /translation="MSCSFSVTRAFAVPGLLLLLSLAAVLSLVIGAKPLPAAVVLEAF TGVCQSADCTIVLDARLPRTLAGLLAGGALGLAGALMQTLTRNPLADPGILGVNNGAS FAIVLGAALFGFSTPLEQLFMAFSGALIASLIVAFTGSQGGGQLSPVRLTLAGVALGA VLEGLTSGIALLNPEVYDQLRFWQAGSLDIRSLQTLKVALAPVVIAGIVALFLSRALN SLSLGSDTATALGSKVARTQLIGLLAITVLCGSATALVGPIAFIGLMMPHMARWLVGA DHRWSLPVTLLATPALLLFADIIGRLLVPGELRVSVVSAFIGAPVLIFLVRRKSSGGG L" misc_feature complement(652571..653575) /gene="fepD" /locus_tag="STM0592" /note="Fe(3+)-siderophore ABC transporter permease; Region: PRK10441" /db_xref="CDD:182464" misc_feature complement(order(652742..652744,652763..652765, 652886..652894,652898..652915,652919..652924, 652928..652936,652940..652945,653312..653320, 653330..653332)) /gene="fepD" /locus_tag="STM0592" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119348" misc_feature complement(order(652598..652600,652607..652612, 652619..652621,652628..652633,652640..652642, 652793..652795,653021..653023,653030..653035, 653066..653068,653072..653077,653084..653086, 653093..653098,653105..653110,653117..653122, 653126..653128,653294..653296,653309..653311, 653315..653317)) /gene="fepD" /locus_tag="STM0592" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature complement(order(652649..652651,652673..652675, 652805..652807,652817..652819,652991..652993, 653066..653068)) /gene="fepD" /locus_tag="STM0592" /note="putative PBP binding regions [active]" /db_xref="CDD:119348" regulatory complement(652579..652584) /regulatory_class="ribosome_binding_site" /gene="fepG" /locus_tag="STM0591" /note="putative RBS for fepG; RegulonDB:STMS1H000918" regulatory complement(653583..653588) /regulatory_class="ribosome_binding_site" /gene="fepD" /locus_tag="STM0592" /note="putative RBS for fepD; RegulonDB:STMS1H000919" gene 653675..654930 /gene="ybdA" /locus_tag="STM0593" /db_xref="GeneID:1252113" regulatory 653675..653680 /regulatory_class="ribosome_binding_site" /gene="ybdA" /locus_tag="STM0593" /note="putative RBS for ybdA; RegulonDB:STMS1H000920" CDS 653686..654930 /gene="ybdA" /locus_tag="STM0593" /note="similar to E. coli putative transport (AAC73692.1); Blastp hit to AAC73692.1 (416 aa), 90% identity in aa 1 - 409" /codon_start=1 /transl_table=11 /product="putative POT family transport protein" /protein_id="NP_459585.1" /db_xref="GeneID:1252113" /translation="MNRQSWLLNLSLLKTHPAFRAVFLARFISIVSLGLLGVAVPVQI QMMTHSTWQVGLSVTLTGGAMFIGLMVGGVLADRYERKKVILLARGTCGIGFIGLCVN ALLPEPSLLAIYLLGLWDGFFASLGVTALLAATPALVGRENLMQAGAITMLTVRLGSV ISPMLGGILLASGGVAWNYGLAAAGTFITLLPLLTLPRLPVPPQPRENPFIALLAAFR FLLASPLIGGIALLGGLVTMASAVRVLYPALAMSWQMSAAQIGLLYAAIPLGAAIGAL TSGQLAHSVRPGLIMLVSTVGSFLAVGLFAIMPVWIAGVICLALFGWLSAISSLLQYT LLQTQTPENMLGRMNGLWTAQNVTGDAIGAALLGGLGAMMTPVASASVSGFGLVIIGL LLLLVLGELRRFRQTPPVSDAG" misc_feature 653686..654927 /gene="ybdA" /locus_tag="STM0593" /note="enterobactin transporter EntS; Region: PRK10489" /db_xref="CDD:236700" regulatory complement(653704..653712) /regulatory_class="minus_10_signal" /gene="fepD" /locus_tag="STM0592" /note="putative -10_signal for fepD; RegulonDB:STMLTH004686" regulatory complement(653720..653728) /regulatory_class="minus_35_signal" /gene="fepD" /locus_tag="STM0592" /note="putative -35_signal for fepD; RegulonDB:STMLTH004686" gene complement(654993..656126) /gene="fepB" /locus_tag="STM0594" /db_xref="GeneID:1252114" CDS complement(654993..655949) /gene="fepB" /locus_tag="STM0594" /note="ABC superfamily (peri_perm); similar to E. coli ferric enterobactin (enterochelin) binding protein; periplasmic component (AAC73693.1); Blastp hit to AAC73693.1 (318 aa), 79% identity in aa 1 - 318" /codon_start=1 /transl_table=11 /product="ferric enterobactin (enterochelin) transporter" /protein_id="NP_459586.1" /db_xref="GeneID:1252114" /translation="MRLPAFYRWLLLVVGISISGISLAQDAGWPRQIQDSRGVHTLDH KPARIVSTSVTLTGSLLAIDAPVVASGATTPNNRFADDQGFMRQWSDVAKARHVARLY IGEPNAETVAAQMPDLILISATGGDSALALYDQLSAIAPTLVINYDDKSWQSLLTQLG EITGQEKQAAARIAEFETQLTTVKQRIALPPQPVSALVYTPAAHSANLWTPESAQGKL LTQLGFTLATLPRGLQTSKSQGKRHDIIQLGGENLAAGLNGESLFLFAGDNKDVAALY ANPLLAHLPAVQNKRVYALGTETFRLDYYSATLLLNRLAALF" misc_feature complement(654996..655937) /gene="fepB" /locus_tag="STM0594" /note="iron-enterobactin transporter periplasmic binding protein; Provisional; Region: PRK10957" /db_xref="CDD:236806" regulatory complement(655956..655961) /regulatory_class="ribosome_binding_site" /gene="fepB" /locus_tag="STM0594" /note="putative RBS for fepB; RegulonDB:STMS1H000921" regulatory complement(656099..656107) /regulatory_class="minus_10_signal" /gene="fepB" /locus_tag="STM0594" /note="putative -10_signal for fepB; RegulonDB:STMLTH004687" regulatory complement(656118..656126) /regulatory_class="minus_35_signal" /gene="fepB" /locus_tag="STM0594" /note="putative -35_signal for fepB; RegulonDB:STMLTH004687" gene 656212..657433 /gene="entC" /locus_tag="STM0595" /db_xref="GeneID:1252115" regulatory 656212..656220 /regulatory_class="minus_35_signal" /gene="entC" /locus_tag="STM0595" /note="putative -35_signal for entC; RegulonDB:STMLTH004688" regulatory 656239..656247 /regulatory_class="minus_10_signal" /gene="entC" /locus_tag="STM0595" /note="putative -10_signal for entC; RegulonDB:STMLTH004688" regulatory 656249..656254 /regulatory_class="ribosome_binding_site" /gene="entC" /locus_tag="STM0595" /note="putative RBS for entC; RegulonDB:STMS1H000922" CDS 656258..657433 /gene="entC" /locus_tag="STM0595" /EC_number="5.4.4.2" /note="similar to E. coli isochorismate hydroxymutase 2, enterochelin biosynthesis (AAC73694.1); Blastp hit to AAC73694.1 (391 aa), 84% identity in aa 1 - 391" /codon_start=1 /transl_table=11 /product="isochorismate synthetase, enterochelin biosynthesis" /protein_id="NP_459587.1" /db_xref="GeneID:1252115" /translation="MDMSLAEDAQETMATLAPDRFFFMSPYRSFTTSGCFARYTEPAV AGDSPDSPFQQKLRQQFAEAKSQGIANPILVGAIPFDTRQPSSLFIPMAWQSFSRQQK QRTARYFTDHQSLTVTARKAIPEQDAFEAMVARAAMLTATPDVDKVVLSRLIDITTDV AVDSGALLERLVAQNPVSYNFHVPLADGGVLLGASPELLLRKEGERFSSLPLAGSARR QPDDVLDREAGNRLLASQKDRHEHELVTQAMKQILRDRSTELQLPSSPQLITTPTLWH LGTPFEGKANAGENALTLACLLHPTPALSGFPHQVAKKLIAELEPFDRELFGGIVGWC DAEGNGEWVVTIRCAKLHGNQVRLFAGAGIVPASSPVGEWRETGVKLSTMLNVFGLH" misc_feature 656258..657430 /gene="entC" /locus_tag="STM0595" /note="isochorismate synthase EntC; Provisional; Region: PRK15016" /db_xref="CDD:184977" gene 657432..659053 /gene="entE" /locus_tag="STM0596" /db_xref="GeneID:1252116" regulatory 657432..657437 /regulatory_class="ribosome_binding_site" /gene="entE" /locus_tag="STM0596" /note="putative RBS for entE; RegulonDB:STMS1H000923" CDS 657443..659053 /gene="entE" /locus_tag="STM0596" /EC_number="6.3.2.-" /note="similar to E. coli 2,3-dihydroxybenzoate-AMP ligase (AAC73695.1); Blastp hit to AAC73695.1 (536 aa), 86% identity in aa 1 - 534" /codon_start=1 /transl_table=11 /product="2,3-dihydroxybenzoate-AMP ligase" /protein_id="NP_459588.1" /db_xref="GeneID:1252116" /translation="MRIPFTRWPDEFARRYREKGYWQDVPLTDILTRHADSDKTAVIE GERAFSYRQLNQAADNLACSLRRQGIKPGETALVQLGNVPELYITFFALLKLGVAPVL ALFSHQRTELNAYAMQIAPTLVIADRQHTLFAGEDFLNTFVAEHRSVRVVLLRNDDGD HSLDAAMRQAAEDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSNEIC GFNEDTRFLCAIPAAHNYAMSSPGALGVFLAKGTVVLATDPSATLCFPLIEKHQINAT ALVPPAVSLWLQAIQEWGGNAPLASLRLLQVGGARLSATLAARIPAEIGCQLQQVFGM AEGLVNYTRLDDSPERIINTQGRPMCPDDEVWVADADGNPLPPGEIGRLMTRGPYTFR GYFNSPLHNASAFDANGFYCSGDLISIDQDGYITVHGREKDQINRGGEKIAAEEIENL LLRHPVVIHAALVSMEDELLGEKSCAYLVVKEPLRAVQVRRFLREQGVAEFKLPDRVE CVASLPLTPVGKVDKKQLRQRLASRSPL" misc_feature 657443..659047 /gene="entE" /locus_tag="STM0596" /note="(2,3-dihydroxybenzoyl)adenylate synthase; Region: entE; PRK10946" /db_xref="CDD:236803" gene 659053..659924 /gene="entB" /locus_tag="STM0597" /db_xref="GeneID:1252117" regulatory 659053..659058 /regulatory_class="ribosome_binding_site" /gene="entB" /locus_tag="STM0597" /note="putative RBS for entB; RegulonDB:STMS1H000924" CDS 659067..659924 /gene="entB" /locus_tag="STM0597" /EC_number="3.3.2.1" /note="similar to E. coli 2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochroismatase (AAC73696.1); Blastp hit to AAC73696.1 (285 aa), 88% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="2,3-dihydro-2,3-dihydroxybenzoate synthetase, isochorismatase" /protein_id="NP_459589.1" /db_xref="GeneID:1252117" /translation="MAIPKLQSYALPTALDIPTNKVNWAFEPERAALLIHDMQDYFVS FWGRNCPMMDQVIANIAALRQYCKEHHIPVYYTAQPKEQSDEDRALLNDMWGPGLTRS PEQQKVVEALTPDEADTVLVKWRYSAFHRSPLEQMLKDTGRNQLIITGVYAHIGCMTT ATDAFMRDIKPFMVADALADFSREEHLMALNYVAGRSGRVVMTESLLPTPVPASKAAL RALILPLLDETDEPLDDENLIDYGLDSVRMMGLAARWRKVHGDIDFVMLAKNPTIDAW WALLSRGVE" misc_feature 659070..659678 /gene="entB" /locus_tag="STM0597" /note="Isochorismatase, also known as 2,3 dihydro-2,3 dihydroxybenzoate synthase, catalyses the conversion of isochorismate, in the presence of water, to 2,3-dihydroxybenzoate and pyruvate, via the hydrolysis of a vinyl ether, an uncommon reaction in biological...; Region: isochorismatase; cd01013" /db_xref="CDD:238495" misc_feature order(659073..659075,659190..659192,659349..659351, 659442..659444,659520..659522,659529..659531, 659607..659609) /gene="entB" /locus_tag="STM0597" /note="hydrophobic substrate binding pocket [active]" /db_xref="CDD:238495" misc_feature order(659175..659177,659301..659303,659328..659330, 659433..659435,659520..659522,659532..659534) /gene="entB" /locus_tag="STM0597" /note="active site" /db_xref="CDD:238495" misc_feature 659517..659522 /gene="entB" /locus_tag="STM0597" /note="conserved cis-peptide bond [active]" /db_xref="CDD:238495" misc_feature 659712..659891 /gene="entB" /locus_tag="STM0597" /note="Phosphopantetheine attachment site; Region: PP-binding; pfam00550" /db_xref="CDD:425746" gene 659911..660679 /gene="entA" /locus_tag="STM0598" /db_xref="GeneID:1252118" regulatory 659911..659916 /regulatory_class="ribosome_binding_site" /gene="entA" /locus_tag="STM0598" /note="putative RBS for entA; RegulonDB:STMS1H000925" CDS 659924..660679 /gene="entA" /locus_tag="STM0598" /EC_number="1.3.1.28" /note="similar to E. coli 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase, enterochelin biosynthesis (AAC73697.1); Blastp hit to AAC73697.1 (248 aa), 90% identity in aa 2 - 248" /codon_start=1 /transl_table=11 /product="2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase" /protein_id="NP_459590.1" /db_xref="GeneID:1252118" /translation="MTGFDFSDKTVWVTGAGKGIGYATALAFVDAGARVIGFDREFTQ ENYPFATEVMDVADAAQVAQVCQRVLQKTTRLDVLVNAAGILRMGATDALSVDDWQQT FAVNVGGAFNLFSQTMAQFRRQQGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALT VGLELAGCGVRCNVVSPGSTDTDMQRTLWVSEDAEQQRIRGFGEQFKLGIPLGKIARP QEIANTILFLASDLASHITLQDIVVDGGSTLGA" misc_feature 659924..660676 /gene="entA" /locus_tag="STM0598" /note="2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated; Region: PRK08220" /db_xref="CDD:236190" gene 660668..661095 /gene="ybdB" /locus_tag="STM0599" /db_xref="GeneID:1252119" regulatory 660668..660673 /regulatory_class="ribosome_binding_site" /gene="ybdB" /locus_tag="STM0599" /note="putative RBS for ybdB; RegulonDB:STMS1H000926" CDS 660682..661095 /gene="ybdB" /locus_tag="STM0599" /note="similar to E. coli orf, hypothetical protein (AAC73698.1); Blastp hit to AAC73698.1 (137 aa), 91% identity in aa 1 - 137" /codon_start=1 /transl_table=11 /product="putative protein PaaI, possibly involved in aromatic compounds catabolism" /protein_id="NP_459591.1" /db_xref="GeneID:1252119" /translation="MIWKRHLTLDELNATSQNTLVAHLGIVYTRLGDDVLEAEMPVDA RTHQPFGLLHGGASAALAETLGSMAGYLMTRDGQCVVGTELNATHHRAISQGKVRGVC LPLHLGRQNQSWEITLFDEQGRRCCTCRLGTAVMG" misc_feature 660682..661092 /gene="ybdB" /locus_tag="STM0599" /note="proofreading thioesterase EntH; Region: PRK10254" /db_xref="CDD:182337" misc_feature order(660838..660840,660925..660927,660946..660957) /gene="ybdB" /locus_tag="STM0599" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:239527" misc_feature order(660841..660843,660847..660849,660856..660858, 660928..660942,660946..660948) /gene="ybdB" /locus_tag="STM0599" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:239527" misc_feature order(660844..660846,660868..660873,660880..660885, 660925..660927) /gene="ybdB" /locus_tag="STM0599" /note="PHB binding site [active]" /db_xref="CDD:239527" gene 661264..663382 /gene="cstA" /locus_tag="STM0600" /db_xref="GeneID:1252120" regulatory 661264..661269 /regulatory_class="ribosome_binding_site" /gene="cstA" /locus_tag="STM0600" /note="putative RBS for cstA; RegulonDB:STMS1H000927" CDS 661277..663382 /gene="cstA" /locus_tag="STM0600" /note="similar to E. coli carbon starvation protein (AAC73699.1); Blastp hit to AAC73699.1 (701 aa), 97% identity in aa 1 - 701" /codon_start=1 /transl_table=11 /product="carbon starvation protein" /protein_id="NP_459592.1" /db_xref="GeneID:1252120" /translation="MNKSGKYLVWTALSVLGAFALGYIALNRGEQINALWIVVASVCV YLIAYRFYGLYIAKKVLAVDPTRMTPAVRHNDGLDYVPTDKKVLFGHHFAAIAGAGPL VGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVSTRRDGRSLGELVKEEMGATAG VIALVACFMIMVIILAVLAMIVVKALTHSPWGTYTVAFTIPLAIFMGIYLRYLRPGRI GEVSVIGLVFLIFAIISGGWVAASPTWAPYFDFTGVQLTWMLVGYGFVAAVLPVWLLL APRDYLSTFLKIGTIVGLAVGILIMRPTLTMPALTKFVDGTGPVWTGDLFPFLFITIA CGAVSGFHALISSGTTPKMLANEGQACFIGYGGMLMESFVAIMALVSACIIDPGVYFA MNSPMAVLAPAGTADVVASAAQVVSSWGFAITPDTLHQIANEVGEQSIISRAGGAPTL AVGMAYILHGALGGMMDVAFWYHFAILFEALFILTAVDAGTRAARFMLQDLLGVVSPG LKRTDSLPANLLATALCVLAWGYFLHQGVVDPLGGINTLWPLFGIANQMLAGMALMLC AVVLFKMKRQRYAWVALVPTAWLLICTLTAGWQKAFSPDAKIGFLAIANKFQAMIDSG NIPPQYTESQLAQLVFNNRLDAGLTIFFMVVVVVLAVFSIKTALAALKIDKPTANETP YEPMPENVDEIVTQAKGAH" misc_feature 661277..663379 /gene="cstA" /locus_tag="STM0600" /note="carbon starvation protein CstA; Region: PRK15015" /db_xref="CDD:184976" gene 663439..663643 /gene="ybdD" /locus_tag="STM0601" /db_xref="GeneID:1252121" regulatory 663439..663444 /regulatory_class="ribosome_binding_site" /gene="ybdD" /locus_tag="STM0601" /note="putative RBS for ybdD; RegulonDB:STMS1H000928" CDS 663446..663643 /gene="ybdD" /locus_tag="STM0601" /note="similar to E. coli orf, hypothetical protein (AAC77309.1); Blastp hit to AAC77309.1 (67 aa), 73% identity in aa 1 - 67" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459593.1" /db_xref="GeneID:1252121" /translation="MFDTLSKAGKYLGQAAKMMIGVPDYDNYVEHMRITHPDQTPMTY EEFFRERQDARYGGKGGARCC" misc_feature 663446..663640 /gene="ybdD" /locus_tag="STM0601" /note="Uncharacterized short protein YbdD, DUF466 family [Function unknown]; Region: YbdD; COG2879" /db_xref="CDD:442126" gene complement(663679..664781) /gene="ybdH" /locus_tag="STM0602" /db_xref="GeneID:1252122" CDS complement(663679..664767) /gene="ybdH" /locus_tag="STM0602" /note="similar to E. coli putative oxidoreductase (AAC73700.1); Blastp hit to AAC73700.1 (362 aa), 81% identity in aa 1 - 361" /codon_start=1 /transl_table=11 /product="putative glycerol dehydrogenase" /protein_id="NP_459594.1" /db_xref="GeneID:1252122" /translation="MNHTEIRVVTGPANYFSHAGSLERLTDFFTPEQLSHAVWVYGER AIAAARPYLPEAFERAGAKHLPFTGHCSERHVAQLAHACNDDRQVVIGVGGGALLDTA KALARRLALPFVAIPTIAATCAAWTPLSVWYNDAGQALQFEIFDDANFLVLVEPRIIL QAPDDYLLAGIGDTLAKWYEAVVLAPQPETLPLTVRLGINSACAIRDLLLDSSEQALA DKQQRRLTQAFCDVVDAIIAGGGMVGGLGERYTRVAAAHAVHNGLTVLPQTEKFLHGT KVAYGILVQSALLGQDDVLAQLITAYRRFHLPARLSELDVDIHNTAEIDRVIAHTLRP VESIHYLPVTLTPDTLRAAFEKVEFFRI" misc_feature complement(663682..664767) /gene="ybdH" /locus_tag="STM0602" /note="putative oxidoreductase; Provisional; Region: PRK10586" /db_xref="CDD:182570" misc_feature complement(order(663946..663948,663985..663987, 663997..663999,664237..664239,664249..664251, 664270..664272,664294..664296,664345..664350, 664405..664407,664411..664416,664459..664461, 664468..664470,664477..664485,664642..664644)) /gene="ybdH" /locus_tag="STM0602" /note="putative active site [active]" /db_xref="CDD:341451" misc_feature complement(order(663946..663948,664294..664296, 664399..664401,664405..664407,664411..664416, 664477..664485,664642..664644)) /gene="ybdH" /locus_tag="STM0602" /note="putative NAD binding site [chemical binding]; other site" /db_xref="CDD:341451" misc_feature complement(order(663946..663948,663997..663999, 664249..664251)) /gene="ybdH" /locus_tag="STM0602" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:341451" regulatory complement(664776..664781) /regulatory_class="ribosome_binding_site" /gene="ybdH" /locus_tag="STM0602" /note="putative RBS for ybdH; RegulonDB:STMS1H000929" gene 664876..666054 /gene="ybdL" /locus_tag="STM0603" /db_xref="GeneID:1252123" regulatory 664876..664881 /regulatory_class="ribosome_binding_site" /gene="ybdL" /locus_tag="STM0603" /note="putative RBS for ybdL; RegulonDB:STMS1H000930" CDS 664894..666054 /gene="ybdL" /locus_tag="STM0603" /EC_number="2.6.1.1" /note="similar to E. coli putative aminotransferase (AAC73701.1); Blastp hit to AAC73701.1 (386 aa), 85% identity in aa 1 - 386" /codon_start=1 /transl_table=11 /product="putative aminotransferase" /protein_id="NP_459595.1" /db_xref="GeneID:1252123" /translation="MRNNPLIPKSKLPNLGTTIFTQMSALAQKHQAINLSQGFPDFDG PRYLHERLAYHVAQGANQYAPMTGAQALREAIADKTAEIYGYRPDDVSDITVTAGATE ALYAAITALVRAGDEVICFDPSYDSYAPAVALSGGVLKRIALTPPHFRVDWQAFSALL SERTRLVILNTPHNPTATVWRQADIEALWQAIGEREIYVLSDEVYEHICFAAEGHASV LAHPQLRERAVAVSSFGKTFHMTGWKIGYCVAPAAISAEIRKVHQYLTFCVNTPAQLA LADMLRAAPEHYRALPDFYRKKRDVLVNALAQSRLKVLPCEGTYFLLIDYSAVSTLND VEFCQWLTEEVGVAAIPLSVFCAAPFPHQLIRLCFAKQESTLLAAAERLCKL" misc_feature 664894..666051 /gene="ybdL" /locus_tag="STM0603" /note="methionine aminotransferase; Validated; Region: PRK09082" /db_xref="CDD:181642" gene complement(666055..666689) /gene="ybdM" /locus_tag="STM0604" /db_xref="GeneID:1252124" CDS complement(666055..666672) /gene="ybdM" /locus_tag="STM0604" /note="similar to E. coli orf, hypothetical protein (AAC73702.1); Blastp hit to AAC73702.1 (209 aa), 77% identity in aa 5 - 209" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_459596.1" /db_xref="GeneID:1252124" /translation="MQHRLTTEITHFLSELPEEERIAAINEFRMAIHSVSPFRDEPVD CVLWVKNDHISPNDYNPNNVAPPEKKLLLKSIEQDGFTQPIVVVKANTEEYEIVDGFH RHELGKGKAALKRRLKGYLPITCLDRERHERMAATIRHNRARGRHQIHAMSEIVRELS LLGWDESKIGQELGMDADEVLRLKQINGLQELFADRRFSRAWTVK" misc_feature complement(666250..666549) /gene="ybdM" /locus_tag="STM0604" /note="immunoglobulin-binding regulator IbrB activates eib genes; Region: IbrB_like; cd16397" /db_xref="CDD:319255" gene complement(666645..667897) /gene="ybdN" /locus_tag="STM0605" /db_xref="GeneID:1252125" CDS complement(666645..667880) /gene="ybdN" /locus_tag="STM0605" /note="similar to E. coli orf, hypothetical protein (AAC73703.1); Blastp hit to AAC73703.1 (406 aa), 82% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="putative 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase" /protein_id="NP_459597.1" /db_xref="GeneID:1252125" /translation="MSVYKVPLEQNVLEAAQERIMWTLETLPRVCVSFSGGKDSGLML HLTATLARKMNKKIHVLFIDWEAQFSCTITYIESLREYYADVIERFYWVALPLTTQNS LSQYQPEWQCWQPGTDWVRQPPEDAITDPAFFSFYQHGMTFEQFVRDFADWFSEKRPA AMLVGIRSDESYNRFAAIANSHKLRFADDKPWTTLAPKGHTWYIYPIYDWKTADIWTW FAKTGKPCNPLYNLMYQAGVPPRYMRICEPFGPEQRQGLWLYHVIEPERWAAMCARVS GALSGGIYAGQDSHFYGHRKILKPDHLNWEEYALLLLHSMPEVTAEHYRNKIAVYLQW YKKKGMHTIPQTQHGDIGSRDIPSWRRICKVLLNNDYWCRALSFSPTKPKNYQRYNER MKAKRQEWGILCNTDSQPK" misc_feature complement(666672..667871) /gene="ybdN" /locus_tag="STM0605" /note="Predicted phosphoadenosine phosphosulfate sulfurtransferase, contains C-terminal DUF3440 domain [General function prediction only]; Region: YbdN; COG3969" /db_xref="CDD:443169" regulatory complement(666684..666689) /regulatory_class="ribosome_binding_site" /gene="ybdM" /locus_tag="STM0604" /note="putative RBS for ybdM; RegulonDB:STMS1H000931" regulatory complement(667892..667897) /regulatory_class="ribosome_binding_site" /gene="ybdN" /locus_tag="STM0605" /note="putative RBS for ybdN; RegulonDB:STMS1H000932" gene complement(668046..668961) /gene="ybdO" /locus_tag="STM0606" /db_xref="GeneID:1252126" CDS complement(668046..668948) /gene="ybdO" /locus_tag="STM0606" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73704.1); Blastp hit to AAC73704.1 (300 aa), 54% identity in aa 1 - 298" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459598.1" /db_xref="GeneID:1252126" /translation="MANLYDLKKFDLNLLVIFECIYQHLSISKAAETLYITPSAVSQS LQRLRTQFNDPLFIRSGKGITPTVTGINLHYHLENNLNSLEQTINIMNQSSLKKKFII YSPQLLITQYVMKLVKYIRKDPQVEIEHHDILTTDELPEDLLAYRKADIVVSMAPLNN RSIVCTHFNRLECILVCSENHPRLGDTATIDEILQESFTQLVSRATGMKEYHSLMDDV LGERIIGFRSKSLMTIANSISSTELIGFLPQTFFDYYSSSIKLKKVTIPFTIAPIQFY LMYNRASLNNSGFAELIEHITKKH" misc_feature complement(668061..668930) /gene="ybdO" /locus_tag="STM0606" /note="DNA-binding transcriptional regulator; Region: PRK11482" /db_xref="CDD:183159" regulatory complement(668956..668961) /regulatory_class="ribosome_binding_site" /gene="ybdO" /locus_tag="STM0606" /note="putative RBS for ybdO; RegulonDB:STMS1H000933" gene complement(669265..670022) /gene="dsbG" /locus_tag="STM0607" /db_xref="GeneID:1252127" CDS complement(669265..670011) /gene="dsbG" /locus_tag="STM0607" /note="similar to E. coli thiol:disulfide interchange protein (AAC73705.1); Blastp hit to AAC73705.1 (268 aa), 80% identity in aa 21 - 266" /codon_start=1 /transl_table=11 /product="periplasmic disulfide isomerase, thiol-disulfide oxidase" /protein_id="NP_459599.1" /db_xref="GeneID:1252127" /translation="MIKRTLLLAMLPILAHAEELPAPVKAIEKQGITILKSFEAPGGM KGYLGKYQDMGVTIYLTPDGKHAISGYMYNEKGENLSNALIEKEIYAPAGREMWQKME KASWILDGKKDAPVVLYVFADPFCPYCKQFWQQARPWVESGKVQLRTLLVGVIKPESP ATAAAILAAKDPAKTWHDYEASAGKMKLEVPASIPPAQMKVINQNQQLMDDLGANATP AIYYMNKDKILQQVVGLPEKAQLDAMMGQP" misc_feature complement(669274..670011) /gene="dsbG" /locus_tag="STM0607" /note="disulfide isomerase/thiol-disulfide oxidase; Provisional; Region: dsbG; PRK11657" /db_xref="CDD:183262" regulatory complement(670017..670022) /regulatory_class="ribosome_binding_site" /gene="dsbG" /locus_tag="STM0607" /note="putative RBS for dsbG; RegulonDB:STMS1H000934" protein_bind 670349..670395 /note="putative binding site for OxyR, RegulonDB: STMS1H000335" /bound_moiety="OxyR" gene 670350..671015 /gene="ahpC" /locus_tag="STM0608" /db_xref="GeneID:1252128" regulatory 670350..670358 /regulatory_class="minus_35_signal" /gene="ahpC" /locus_tag="STM0608" /note="putative -35_signal for ahpC; RegulonDB:STMLTH004689" regulatory 670374..670382 /regulatory_class="minus_10_signal" /gene="ahpC" /locus_tag="STM0608" /note="putative -10_signal for ahpC; RegulonDB:STMLTH004689" regulatory 670440..670445 /regulatory_class="ribosome_binding_site" /gene="ahpC" /locus_tag="STM0608" /note="putative RBS for ahpC; RegulonDB:STMS1H000935" CDS 670452..671015 /gene="ahpC" /locus_tag="STM0608" /note="detoxification of hydroperoxides; alkyl hydroperoxide reductase C22 protein. (SW:AHPC_SALTY)" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase, C22 subunit" /protein_id="NP_459600.1" /db_xref="GeneID:1252128" /translation="MSLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFT FVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTG ALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIKAAQYVAA HPGEVCPAKWKEGEATLAPSLDLVGKI" misc_feature 670452..671012 /gene="ahpC" /locus_tag="STM0608" /note="alkyl hydroperoxide reductase subunit C; Provisional; Region: PRK10382" /db_xref="CDD:182423" gene 671245..672822 /gene="ahpF" /locus_tag="STM0609" /db_xref="GeneID:1252129" regulatory 671245..671250 /regulatory_class="ribosome_binding_site" /gene="ahpF" /locus_tag="STM0609" /note="putative RBS for ahpF; RegulonDB:STMS1H000936" CDS 671257..672822 /gene="ahpF" /locus_tag="STM0609" /note="detoxification of hydroperoxides; alkyl hydroperoxide reductase subunit F. (SW:AHPF_SALTY)" /codon_start=1 /transl_table=11 /product="alkyl hydroperoxide reductase, F52a subunit" /protein_id="NP_459601.1" /db_xref="GeneID:1252129" /translation="MLDTNMKTQLRAYLEKLTKPVELIATLDDSAKSAEIKELLAEIA ELSDKVTFKEDNTLPVRKPSFLITNPGSQQGPRFAGSPLGHEFTSLVLALLWTGGHPS KEAQSLLEQIRDIDGDFEFETYYSLSCHNCPDVVQALNLMAVLNPRIKHTAIDGGTFQ NEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEALNKRDAYDVLIV GSGPAGAAAAVYSARKGIRTGLMGERFGGQVLDTVDIENYISVPKTEGQKLAGALKAH VSDYDVDVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGE DQYRTKGVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA DQVLQDKVRSLKNVDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIG LLPNTHWLEGALERNRMGEIIIDAKCETSVKGVFAAGDCTTVPYKQIIIATGEGAKAS LSAFDYLIRTKIA" misc_feature 671257..672819 /gene="ahpF" /locus_tag="STM0609" /note="alkyl hydroperoxide reductase subunit F; Provisional; Region: PRK15317" /db_xref="CDD:237942" gene 673148..673714 /locus_tag="STM0610" /db_xref="GeneID:1252130" regulatory 673148..673153 /regulatory_class="ribosome_binding_site" /locus_tag="STM0610" /note="putative RBS for STM0610; RegulonDB:STMS1H000937" CDS 673154..673714 /locus_tag="STM0610" /note="similar to E. coli putative oxidoreductase component (AAC74663.1); Blastp hit to AAC74663.1 (207 aa), 30% identity in aa 78 - 196" /codon_start=1 /transl_table=11 /product="putative component of anaerobic dehydrogenases" /protein_id="NP_459602.1" /db_xref="GeneID:1252130" /translation="MDSIYESLTELEKTGLTLRDFFNSHDSRSLKSAYVRLNPTAAVN LTDRAWLEAEYDFNALFVGPGKLLAAPFASVYLEDDALVMGKATLEIRDFMAALGLSV NQESNIPDDHISCVLELTTLLLANTRQTSPYRSTLTQYINNYLTKWVPLYIEKIKTHA QTTTLYTVADILFYWLAELKREYQYE" misc_feature <673304..673702 /locus_tag="STM0610" /note="Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation [Posttranslational modification, protein turnover, chaperones]; Region: TorD; COG3381" /db_xref="CDD:442608" gene 673695..675986 /locus_tag="STM0611" /db_xref="GeneID:1252131" regulatory 673695..673700 /regulatory_class="ribosome_binding_site" /locus_tag="STM0610" /note="putative RBS for STM0611; RegulonDB:STMS1H000938" CDS 673707..675986 /locus_tag="STM0611" /note="similar to E. coli putative oxidoreductase, major subunit (AAC74659.1); Blastp hit to AAC74659.1 (808 aa), 31% identity in aa 10 - 314, 26% identity in aa 298 - 673, 36% identity in aa 636 - 765, 34% identity in aa 489 - 517" /codon_start=1 /transl_table=11 /product="putative oxidoreductase protein" /protein_id="NP_459603.1" /db_xref="GeneID:1252131" /translation="MSNETGHLNRRSFLKGIVALGAVAALPGGLLTSRCALAQPPVPF NPKTYKIYRNACPRNCYDTCSLKTWVKDGVITFVEGAPESTFTHGTPCVKGLSYPRRV YSPDRIKYPMTQDVRGSGNWRRISWEEAMQRIAAKMLEIKKKDGSMLGLALTKYSGKF GVLNYAVEGMMSSLGYTTRFAGTPCWPAGIDAQNYDMGDMWCNDPEDMVKAKYIIIWG ANPAWCSMHSMKYIYQAREKGAKVVVIDPLLSQTAAKADLYLRVRPGSDGALALGMAR HLVDKGLVDQDFVNNDAHGYPEFEAYLRNHVTVEWAAEICGLSADVIRQLAEEFTAVK PATVWIGYGMQRHVNGGANVRAIDAFVAMSGNIGVEGGGARYGHLHTWGFNYNAMLQK PPVGAIGIPGAAGTTSEFGAAAGSDAVQYSDRSLNINQTAQGILEANDPPVRMLWVAC KNPFAQDFDRSKMKKAFEKLEMVVCADQFFNETVQHADIVLPVTTAFEEWNVDASYWH YWLSINQPAIKPMYEAKCDLEIATMLSRTINKMAPGSCTFPQEFDHKRWLDQEFNDGM AKMFGISSWDDLLDGPKKAILPSSAAWYDRKFKTPSGKYEFKSELAEKNGHTALPEYK PEAESKLPFHLFTPHVQFGLHSQFINLDWMQVFYPEPFVYIHPSSAKKKGISENDLVK VFNGTGEVELRAKVTTNVPEDFLVMYEAWFPKRQYNVQNVVADTPADMGLMKTGAPGA AIHSQFADVVLIGKGESVA" misc_feature 673725..673802 /locus_tag="STM0611" /note="TAT (twin-arginine translocation) pathway signal sequence; Region: TAT_signal; pfam10518" /db_xref="CDD:463131" misc_feature 673863..675572 /locus_tag="STM0611" /note="The MopB_3 CD includes a group of related uncharacterized bacterial and archaeal molybdopterin-binding oxidoreductase-like domains with a putative N-terminal iron-sulfur [4Fe-4S] cluster binding site and molybdopterin cofactor binding site. These members...; Region: MopB_3; cd02766" /db_xref="CDD:239167" misc_feature order(673872..673874,673884..673886,673896..673898, 673980..673982) /locus_tag="STM0611" /note="putative [4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:239167" misc_feature order(673986..673988,674250..674252,674256..674264, 674355..674360,674364..674366,674373..674378, 674439..674447,674505..674507,674727..674738, 674841..674846,675054..675062,675132..675140, 675147..675149,675183..675188,675201..675203) /locus_tag="STM0611" /note="putative molybdopterin cofactor binding site [chemical binding]; other site" /db_xref="CDD:239167" misc_feature 675618..675899 /locus_tag="STM0611" /note="Molybdopterin-Binding, C-terminal (MopB_CT) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum-...; Region: MopB_CT; cd02775" /db_xref="CDD:239176" misc_feature order(675618..675623,675627..675632,675639..675644, 675831..675833,675864..675866) /locus_tag="STM0611" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:239176" gene 675977..676540 /locus_tag="STM0612" /db_xref="GeneID:1252132" regulatory 675977..675982 /regulatory_class="ribosome_binding_site" /locus_tag="STM0612" /note="putative RBS for STM0612; RegulonDB:STMS1H000939" CDS 675983..676540 /locus_tag="STM0612" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); Blastp hit to AAC73981.1 (205 aa), 41% identity in aa 7 - 156" /codon_start=1 /transl_table=11 /product="putative hydrogenase protein" /protein_id="NP_459604.1" /db_xref="GeneID:1252132" /translation="MRRAFLVNSDKCIGCRGCAMACKSFNQLEPDRFWRYVYPLDKDI YPHEERAFYSLACNHCEHPACVAACPVEAYTKREDGVVVHNPERCIGCKNCIRNCPYG APRFNEETRKAEKCSMCYERLDIGMNPACVNACPVGALSIIDLDADPVPDNAVQYPPG FPHMPQLNPGTRFILARQPKQPEDK" misc_feature 675992..676411 /locus_tag="STM0612" /note="uncharacterized subfamily of DMSO Reductase beta subunit family; Region: DMSOR_beta_like; cd16371" /db_xref="CDD:319893" misc_feature order(675995..675997,676016..676027,676031..676036, 676046..676048,676058..676060,676085..676087, 676091..676093,676142..676144,676151..676162, 676175..676177,676187..676192,676199..676204, 676226..676228,676256..676267,676277..676285, 676289..676294,676319..676321,676325..676339, 676373..676375,676385..676387,676400..676402) /locus_tag="STM0612" /note="Fe-S cluster binding site [ion binding]; other site" /db_xref="CDD:319893" gene 676533..677307 /locus_tag="STM0613" /db_xref="GeneID:1252133" regulatory 676533..676538 /regulatory_class="ribosome_binding_site" /locus_tag="STM0612" /note="putative RBS for STM0613; RegulonDB:STMS1H000940" CDS 676540..677307 /locus_tag="STM0613" /note="similar to E. coli putative DMSO reductase anchor subunit (AAC74662.1); Blastp hit to AAC74662.1 (284 aa), 30% identity in aa 6 - 200" /codon_start=1 /transl_table=11 /product="putative hydrogenase protein" /protein_id="NP_459605.1" /db_xref="GeneID:1252133" /translation="MEKYELPLVFFTVLSQMSVGMALVLTWRTLRGEVEGQRFYWLAT GLVLALASIAAILHLAHPDRAYDALINLRHAWLSREILGATLFGAAVGVTFLAKGHKA MALIASVFGVLLVAVQGMTYAAPAMVAIANGFTMLLFFITVWVMGCAAIPLLKLRPAV PALRQGIVVCIAVLIAAPLVWLSGGTVMQMTARSWLASPFYLASLVCLALAFVASRHG DSRPKRLFVLLFVGVFLSRLVFFGDTVSTIVNIGHLY" misc_feature 676552..677280 /locus_tag="STM0613" /note="DMSO reductase anchor subunit DmsC [Energy production and conversion]; Region: DmsC; COG3302" /db_xref="CDD:442531" gene complement(677375..677818) /gene="ybdQ" /locus_tag="STM0614" /db_xref="GeneID:1252134" CDS complement(677375..677803) /gene="ybdQ" /locus_tag="STM0614" /note="similar to E. coli orf, hypothetical protein (AAC73708.1); Blastp hit to AAC73708.1 (142 aa), 89% identity in aa 1 - 142" /codon_start=1 /transl_table=11 /product="putative universal stress protein UspA and related nucleotide-binding protein" /protein_id="NP_459606.1" /db_xref="GeneID:1252134" /translation="MYKTIIMPVDVFEMELSDKAIRHAEFLAQQDGVIHLLHVLPGSA SMSLHRFAADVRRFEEHLQHEAETRLQTMVGHFSIDPSRIKTHVRFGSVRDVVNEMGE ELDADVVVIGSRNPSITTHLLGSNASSVVRHATLPVLVVR" misc_feature complement(677378..677803) /gene="ybdQ" /locus_tag="STM0614" /note="universal stress protein UspG; Provisional; Region: PRK15456" /db_xref="CDD:185353" regulatory complement(677813..677818) /regulatory_class="ribosome_binding_site" /gene="ybdQ" /locus_tag="STM0614" /note="putative RBS for ybdQ; RegulonDB:STMS1H000941" gene 678015..679264 /gene="ybdR" /locus_tag="STM0615" /db_xref="GeneID:1252135" regulatory 678015..678020 /regulatory_class="ribosome_binding_site" /gene="ybdR" /locus_tag="STM0615" /note="putative RBS for ybdR; RegulonDB:STMS1H000942" CDS 678026..679264 /gene="ybdR" /locus_tag="STM0615" /note="similar to E. coli putative oxidoreductase (AAC73709.1); Blastp hit to AAC73709.1 (412 aa), 91% identity in aa 1 - 412" /codon_start=1 /transl_table=11 /product="putative dehydrogenase" /protein_id="NP_459607.1" /db_xref="GeneID:1252135" /translation="MKALTYHGPHHVKVENVPDPGIEQPDDIILRVTATAICGSDLHL YRGKIPQVKHGDIFGHEFMGEVVETGHDVKNIRKGDRVVIPFVIACGDCFFCRLQQYS ACENTNDGHGAAMNKKQIPPPAALFGYSHLYGGVPGGQAEYVRVPKGNVGPFKVPPLL SDDKALFLSDILPTAWQAAKNAQIQQGFSVAVFGAGPVGLLTIACARLLGAEQIFVVD HHAWRLRFAEERYGAIPINFDDENDPAEKIIEQTAGHRGVDAVIDAVGFEAKGSLTET VLTNLKLEGSSGKALRQCIAAVRRGGVVSVPGVYAGFIHGFLFGDAFDKGLTFKMGQT HVHAWLGELLPLIEKGLLKPEEIVTHYMPFEEAARGYEIFEKREEECRKVILVPGATS AQAAQKQATGVVNPMPGGVV" misc_feature 678026..679189 /gene="ybdR" /locus_tag="STM0615" /note="Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1; Region: FDH_like_1; cd08283" /db_xref="CDD:176243" misc_feature order(678137..678145,678152..678154,678281..678283, 678533..678535,678545..678547,678602..678607, 678611..678619,678674..678682,678692..678694, 678737..678739,678815..678823,678893..678895, 678944..678952,679019..679027,679145..679147) /gene="ybdR" /locus_tag="STM0615" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:176243" misc_feature order(678137..678139,678143..678145,678203..678205, 678533..678535) /gene="ybdR" /locus_tag="STM0615" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176243" misc_feature order(678293..678298,678302..678304,678311..678313, 678335..678337) /gene="ybdR" /locus_tag="STM0615" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176243" gene complement(679347..679769) /gene="rnk" /locus_tag="STM0616" /db_xref="GeneID:1252136" CDS complement(679347..679757) /gene="rnk" /locus_tag="STM0616" /note="similar to E. coli regulator of nucleoside diphosphate kinase (AAC73711.1); Blastp hit to AAC73711.1 (136 aa), 91% identity in aa 1 - 135" /codon_start=1 /transl_table=11 /product="regulator of nucleoside diphosphate kinase" /protein_id="NP_459608.1" /db_xref="GeneID:1252136" /translation="MSRPTIIINDLDAERIDRLLEQPAYADLPIADALNAELDRAQMC SPQEMPNDVVTMNSRVKFRNLSDGETRVRTLVYPANMTDSSTQLSVMAPVGAALLGLR VGDTIHWELPGGASTHLEVLELEYQPEAAGDFLR" misc_feature complement(679350..679757) /gene="rnk" /locus_tag="STM0616" /note="nucleoside diphosphate kinase regulator; Provisional; Region: PRK05753" /db_xref="CDD:180236" regulatory complement(679764..679769) /regulatory_class="ribosome_binding_site" /gene="rnk" /locus_tag="STM0616" /note="putative RBS for rnk; RegulonDB:STMS1H000943" gene complement(679992..680798) /gene="rna" /locus_tag="STM0617" /db_xref="GeneID:1252137" CDS complement(679992..680798) /gene="rna" /locus_tag="STM0617" /EC_number="4.6.1.21" /note="similar to E. coli RNase I, cleaves phosphodiester bond between any two nucleotides (AAC73712.1); Blastp hit to AAC73712.1 (268 aa), 73% identity in aa 1 - 268" /codon_start=1 /transl_table=11 /product="RNase I" /protein_id="NP_459609.1" /db_xref="GeneID:1252137" /translation="MNTIWHYSPLLAALLTPIFAANADELQAQQYGDFTDYVLALSWQ TGFCQSQHERRHREPDECRLQKEPANKADFLTVHGLWPGLPKSIAARGVDQRRWQRFG CATRPIPNLPEVKASRKCSASAPGLSPDIAAALKEVMPGAGGNSCLERYEYAKHGACF GFDPNAYFGTMIRLDKAIKDSALGQFLTDNYGKTVSRAEFDSVVAQMWGQDNVKAVKV NCHGNPAYLTEIQFSLKASMINAPLSSASFLPQPHPGNCGKQFIIDKAGY" misc_feature complement(679995..680798) /gene="rna" /locus_tag="STM0617" /note="ribonuclease I; Provisional; Region: PRK10095" /db_xref="CDD:236650" misc_feature complement(order(680322..680357,680553..680576)) /gene="rna" /locus_tag="STM0617" /note="CAS motifs [active]" /db_xref="CDD:238513" misc_feature complement(order(680331..680336,680343..680348, 680556..680558,680565..680567)) /gene="rna" /locus_tag="STM0617" /note="active site" /db_xref="CDD:238513" gene complement(680908..682385) /gene="citT" /locus_tag="STM0618" /db_xref="GeneID:1252138" CDS complement(680908..682371) /gene="citT" /locus_tag="STM0618" /note="similar to E. coli putative a membrane protein (AAC73713.1); Blastp hit to AAC73713.1 (487 aa), 94% identity in aa 1 - 487" /codon_start=1 /transl_table=11 /product="DASS family, citrate:succinate transport (antiport) protein" /protein_id="NP_459610.1" /db_xref="GeneID:1252138" /translation="MSLSKDNIWKLLAPLVVMGVMLLIPVPDGMPPQAWHYFAVFVAM IVGMILEPIPATAISFIAVTICVIGSNYLLFDASELADPAFKASKQALKWGLAGFSST TVWLVFGAFIFALGYEVTGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNT ARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVL GLEFVSKIAGVQISWLQWFLSFLPVGIILLIVAPWLSYVLYKPEVTHSAEVAAWAGGE LKNMGRLSRKEWTLIGLVLLSLGLWVFGGKIINATAVGLLAVSLMLALHVVPWKDITR YNSAWNTLVNLATLVVMANGLTRSGFIDWFANTMSTHLEGFSPDATVIVLVLVFYFAH YLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIY GCGYVKSRDYWRLGAIFGVIYIAMLLLVGWPILAMWN" misc_feature complement(680914..682359) /gene="citT" /locus_tag="STM0618" /note="Sodium:sulfate symporter transmembrane region; Region: Na_sulph_symp; pfam00939" /db_xref="CDD:279307" misc_feature complement(order(680929..680967,681040..681099, 681184..681192,681199..681237,681307..681363, 681403..681414,681418..681450,681472..681510, 681604..681615,681619..681651,681727..681795, 681823..681825,681838..681891,681895..681900, 681907..681951,682018..682071)) /gene="citT" /locus_tag="STM0618" /note="transmembrane helices; other site" /db_xref="CDD:238344" regulatory complement(682380..682385) /regulatory_class="ribosome_binding_site" /gene="citT" /locus_tag="STM0618" /note="putative RBS for citT; RegulonDB:STMS1H000944" gene complement(682409..683318) /gene="citG" /locus_tag="STM0619" /db_xref="GeneID:1252139" CDS complement(682409..683305) /gene="citG" /locus_tag="STM0619" /note="similar to E. coli orf, hypothetical protein (AAC73714.1); Blastp hit to AAC73714.1 (292 aa), 77% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="putative modifier of citrate lyase protein" /protein_id="NP_459611.1" /db_xref="GeneID:1252139" /translation="MMPIPANPTNASIQPQSLYDVWADLAWRAMLTEVNLSPKPGLVD RLNCGAHKDMALADFHRSAEAIRHWLPRFMEYGASCTRLPPESVLAGLRPLGMACEAA MFRATAGVNTHKGSIFSLGLLCAAIGRLYQLRQPIAAETLCATAADFCRGLTTRELRQ NNLQLTAGQRLYQQLGLTGARGEAEAGYPLVIRHALPHYRALLAQGRDPELALLDTLL LLMSLNGDTNVASRGGADGLRWLQQQAAVLLQQGGIRTPDDLVYLHRFDQQCIERNLS PGGSADLLIVTWFLAQISQVNH" misc_feature complement(682427..683302) /gene="citG" /locus_tag="STM0619" /note="triphosphoribosyl-dephospho-CoA synthase; Provisional; Region: citG; PRK10096" /db_xref="CDD:182239" gene complement(683277..683846) /gene="citX" /locus_tag="STM0620" /db_xref="GeneID:1252140" CDS complement(683277..683828) /gene="citX" /locus_tag="STM0620" /note="similar to E. coli orf, hypothetical protein (AAC73715.1); Blastp hit to AAC73715.1 (183 aa), 75% identity in aa 1 - 179" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459612.1" /db_xref="GeneID:1252140" /translation="MRLFPELATCHDVSIPELLASRDERQARQRAWLTRHATPLVSFT VVAPGPIKDSALTRRIFNHGVTALHTLAEEYGWTIREQAALASASGPEGLLAIDAPAQ ALKQATIALEQRYPLGRLWDIDVLTAEGEILSRRHFALPARRCLLCGQSAAECARGKT HALTDLLIHMEALLHDADSRQPD" misc_feature complement(683280..683813) /gene="citX" /locus_tag="STM0620" /note="2'-(5''-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase; Reviewed; Region: citX; PRK01392" /db_xref="CDD:234951" regulatory complement(683313..683318) /regulatory_class="ribosome_binding_site" /gene="citX" /locus_tag="STM0620" /note="putative RBS for citG; RegulonDB:STMS1H000945" gene complement(683832..685372) /gene="citF" /locus_tag="STM0621" /db_xref="GeneID:1252141" CDS complement(683832..685361) /gene="citF" /locus_tag="STM0621" /EC_number="2.8.3.10" /EC_number="4.1.3.34" /EC_number="4.1.3.6" /note="bifunctional; similar to E. coli citrate lyase alpha chain (AAC73716.1); Blastp hit to AAC73716.1 (510 aa), 88% identity in aa 1 - 510; citrate-ACP transferase" /codon_start=1 /transl_table=11 /product="citrate lyase alpha chain" /protein_id="NP_459613.1" /db_xref="GeneID:1252141" /translation="MTQKNESQRQDRVAAWSRHAESELSAYQSAAKLDLQAQKPRDHK LCASLEEAIRRSGLRDGMTVSFHHAFRGGDLTINLVMETIAKMGFKNLTLASSSLSDC HAPLVEHIRNGVVSRIYTSGLRGPLAEEISRGLLAEPVQIHSHGGRVHLVQSGELNID VAFLGVPSCDEFGNANGYTGKACCGSLGYAMVDADSAKQVVMLTEQLLPYPHNPASIA QDQVDLIVQIEEVGDANKIGAGATRMTTNPRELLIARSAAEVIAHSGYFNEGFSLQTG TGGASLAVTRFLEDKMRSRNIVANFALGGITATMVDLHEKGLIRKLLDVQSFDRNAAQ SLARNPNHIEISANQYANWGSKGASVDRLDVVVLSALEVDTHFNVNVLTGSDGVLRGA SGGHCDTAVAAALSIIVAPLVRGRIPTLVDNVTTCVTPGSSVDILVTDHGIAVNPARP ELAERLKAAGMKVVSIEWLRERAQLLTGQPRPIEFTDRVIAVVRYRDGSVIDVVHQVK E" misc_feature complement(683835..685295) /gene="citF" /locus_tag="STM0621" /note="Citrate lyase, alpha subunit [Energy production and conversion]; Region: CitF; COG3051" /db_xref="CDD:442285" regulatory complement(683841..683846) /regulatory_class="ribosome_binding_site" /gene="citX" /locus_tag="STM0620" /note="putative RBS for citX; RegulonDB:STMS1H000946" regulatory complement(685367..685372) /regulatory_class="ribosome_binding_site" /gene="citF" /locus_tag="STM0621" /note="putative RBS for citF; RegulonDB:STMS1H000947" gene complement(685371..686290) /gene="citE" /locus_tag="STM0622" /db_xref="GeneID:1252142" CDS complement(685371..686279) /gene="citE" /locus_tag="STM0622" /EC_number="2.8.3.10" /EC_number="4.1.3.34" /EC_number="4.1.3.6" /note="similar to E. coli citrate lyase beta chain (acyl lyase subunit) (AAC73717.1); Blastp hit to AAC73717.1 (307 aa), 95% identity in aa 6 - 307" /codon_start=1 /transl_table=11 /product="citrate lyase beta chain (acyl lyase subunit)" /protein_id="NP_459614.1" /db_xref="GeneID:1252142" /translation="MISASLQQRKTRTRRSMLFVPGANAAMVSNSFIYPADALMFDLE DSVALREKDAARRLVYHALQHPLYRDVETIVRVNALDSEWGVNDLEAVVRGGADVVRL PKTDTAQDVIDIENEILRIENACGREPGSTGLLAAVESPLGITRAVEIAHASERLIGI ALGAEDYVRNLRTERSPEGTELLFARCAILQAARSAGIQAFDTVYSDANNEAGFLQEA AHIKQLGFDGKSLINPRQIELLHNLYAPTRKEVAHARLVVEAAEAAAREGLGVVSLNG KMVDSPVIERARLVLSRAELSGIREE" misc_feature complement(685383..686246) /gene="citE" /locus_tag="STM0622" /note="Malate synthase catalyzes the Claisen condensation of glyoxylate and acetyl-CoA to malyl-CoA, which hydrolyzes to malate and CoA. This reaction is part of the glyoxylate cycle, which allows certain organisms, like plants and fungi, to derive their...; Region: malate_synt; cl21481" /db_xref="CDD:451263" gene complement(686276..686582) /gene="citD" /locus_tag="STM0623" /db_xref="GeneID:1252143" CDS complement(686276..686572) /gene="citD" /locus_tag="STM0623" /note="similar to E. coli citrate lyase acyl carrier protein (gamma chain) (AAC73718.1); Blastp hit to AAC73718.1 (98 aa), 90% identity in aa 1 - 98" /codon_start=1 /transl_table=11 /product="citrate lyase acyl carrier protein (gamma chain)" /protein_id="NP_459615.1" /db_xref="GeneID:1252143" /translation="MKINQLAVAGTLESGDVMIRIAPLDTQDIDLQINSSVEKQFGEA IRATILEVLSRYDVRGVQLNVDDKGALDCILRARLETLLARASGIAALPWEDRQ" misc_feature complement(686297..686572) /gene="citD" /locus_tag="STM0623" /note="citrate lyase subunit gamma; Provisional; Region: PRK13253" /db_xref="CDD:237316" regulatory complement(686285..686290) /regulatory_class="ribosome_binding_site" /gene="citD" /locus_tag="STM0623" /note="putative RBS for citE; RegulonDB:STMS1H000948" gene complement(686569..687661) /gene="citC" /locus_tag="STM0624" /db_xref="GeneID:1252144" CDS complement(686569..687645) /gene="citC" /locus_tag="STM0624" /EC_number="6.2.1.22" /note="similar to E. coli citrate lyase synthetase (citrate (pro-3S)-lyase ligase (AAC73719.1); Blastp hit to AAC73719.1 (381 aa), 86% identity in aa 30 - 380" /codon_start=1 /transl_table=11 /product="citrate lyase synthetase (citrate (pro-3S)-lyase ligase" /protein_id="NP_459616.1" /db_xref="GeneID:1252144" /translation="MFGNNVFTRVKRSENKKMAEIAHFLKENDLSVDTTVEVFITVSR DDRLIACGGIAGNIIKCVAISESVRGEGLALTLATELINLAWERHCTHLFIYTKTEYE ALFKQCSFSTIASVPGVMVLMENSATRLKRYAESLATLRHEGKKIGCIVMNANPFTNG HRYLIQQAAAQCDWLHLFLVKEDTSRFPYEDRLDLVLKGTTDIPRLTVHRGSEYIISR ATFPCYFIKEQSVINHCYTEIDLKIFRQYLAPALGITHRFVGTEPFCTVTAQYNLDMR FWLETPTLPAPPITLVEIERLCFQETPISASWVRKLLVKHDLTAIAPLVPDATLRYLQ GMVERHPGSAAARQKSPVLATGEK" misc_feature complement(686644..687606) /gene="citC" /locus_tag="STM0624" /note="Citrate lyase synthetase CitC [Energy production and conversion]; Region: CitC; COG3053" /db_xref="CDD:442287" regulatory complement(686577..686582) /regulatory_class="ribosome_binding_site" /gene="citD" /locus_tag="STM0623" /note="putative RBS for citD; RegulonDB:STMS1H000949" regulatory complement(687656..687661) /regulatory_class="ribosome_binding_site" /gene="citC" /locus_tag="STM0624" /note="putative RBS for citC; RegulonDB:STMS1H000950" gene 688019..689691 /gene="dpiB" /locus_tag="STM0625" /db_xref="GeneID:1252145" regulatory 688019..688024 /regulatory_class="ribosome_binding_site" /gene="dpiB" /locus_tag="STM0625" /note="putative RBS for dpiB; RegulonDB:STMS1H000951" CDS 688030..689691 /gene="dpiB" /locus_tag="STM0625" /EC_number="2.7.3.-" /note="regulation of cit operon and plasmid inheritance genes; similar to E. coli putative sensor-type protein (AAC73720.1); Blastp hit to AAC73720.1 (552 aa), 86% identity in aa 2 - 552" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with DpiA" /protein_id="NP_459617.1" /db_xref="GeneID:1252145" /translation="MSCQKNKKLFPFFRQLAFPLRIFLLILVVSVFIVAALAQYLSAS FEDYLASHVRDMAMNQAKIIASNDSIIAAVKNRDYKRLAIIANKLQRGTDFDYVVIGD RHSIRLYHPNPEKIGYPMQFTKPGALERGESYFITGKGSIGMAMRAKTPIFDNEGNVI GVVSIGYLVSKIDSWRLDFLLPMAGVFVLLLVVLMLLSWFFAAHIRRQMLGMEPKQIA RVVRQQEALFSSVYEGLIAVDPEGHITAINRNARKMLGLPSPGRQWLGKLIAEVVNPA DFFTCQIAERRQDVMANFNGLSVIANREAIRSGEELLGAIISFRSKDEIATLNAQLTQ IKQYVESLRTLRHEHLNWMSTLNGLLQMKEYDRVREMVQGESQAQQQLIDSLRGAFAD RQVAGLLFGKVQRARELGLKMVIVPGSQLHQLPEGLDSTEFAAIVGNLLDNAFEASLR TQEGDKTIELFLSDEGDEVVIEVADQGCGVPEALREKIFEQGVSTRTDEPGEHGIGLY LIASYVGRCGGVITLEDNDPCGTLFSLFLPKVKKNDDRTINPIDR" misc_feature 688030..689664 /gene="dpiB" /locus_tag="STM0625" /note="sensor histidine kinase DpiB; Provisional; Region: dpiB; PRK15053" /db_xref="CDD:185013" gene 689647..690340 /gene="dpiA" /locus_tag="STM0626" /db_xref="GeneID:1252146" regulatory 689647..689652 /regulatory_class="ribosome_binding_site" /gene="dpiA" /locus_tag="STM0626" /note="putative RBS for dpiA; RegulonDB:STMS1H000952" CDS 689660..690340 /gene="dpiA" /locus_tag="STM0626" /note="transcriptional regulation of cit operon (citrate fermentation) genes and of plasmid inheritance genes (OmpR family); similar to E. coli sequence similarity to Shigella regulator (AAC73721.1); Blastp hit to AAC73721.1 (226 aa), 84% identity in aa 1 - 226" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with DpiB" /protein_id="NP_459618.1" /db_xref="GeneID:1252146" /translation="MTEPLTLLIVEDETLLAEMHAEYIRHIPSFNQIWLAGNLAQARM MIDRFKPGLILLDNYLPDGKGITLLHELMQSRYPGGVVFTTAASDMETVAEAVRSGAF DYLVKPIAYERLGQTLTRYQQRRRMLASADSASQKQIDEMFNAYARGEPKGDLPTGID ALTLNAVMRLFADPTVRHTAETVAQALTISRTTSRRYLEYCASQHLIVAEIIHGKVGR PQRIYHGG" misc_feature 689660..690334 /gene="dpiA" /locus_tag="STM0626" /note="two-component response regulator DpiA; Provisional; Region: dpiA; PRK10046" /db_xref="CDD:182208" gene complement(690394..691790) /gene="dcuC" /locus_tag="STM0627" /db_xref="GeneID:1252147" CDS complement(690394..691779) /gene="dcuC" /locus_tag="STM0627" /note="similar to E. coli transport of dicarboxylates (AAC73722.1); Blastp hit to AAC73722.1 (461 aa), 92% identity in aa 1 - 460" /codon_start=1 /transl_table=11 /product="DcuC family, dicarboxylate transporter" /protein_id="NP_459619.1" /db_xref="GeneID:1252147" /translation="MLTVIELLIGVVVIVGVARYIIKGYSATGVLFVGGLALLIISAL MGHKVLPASETSTGYTATDIVEYIKILLMSRGGDLGMMIMMLCGFAAYMTHIGANDMV VKLASKPLQYINSPYLLMIAAYFVACLMSLAVSSATGLGVLLMATLFPVMVNVGISRG AAAAICASPAAIILSPTSGDVVLAAKAAEMPLIDFAFKTTLPISIAAIIGMAIAHFFW QRYLDKKENISHEMLDVAEITTTAPAFYALLPFTPIIGVLIFDGKWGPQLHIITILVI CMLLAAVLEFVRGFNTQNVFSGLEVAYRGMADAFAGVVMLLVAAGVFAQGLSTIGFIQ SLISIATSFGSASIILMLVLVILTMLAAMTTGSGNAPFYAFVEMIPKLAHSSGINPAY LSIPMLQASNLGRTISPVSGVVVAVAGMAKISPFEVVKRTSVPVIVGLLIVIIATEIM VPGASSSVTGG" misc_feature complement(690415..691779) /gene="dcuC" /locus_tag="STM0627" /note="C4-dicarboxylate transporter DcuC; Provisional; Region: dcuC; PRK10654" /db_xref="CDD:182621" regulatory complement(691785..691790) /regulatory_class="ribosome_binding_site" /gene="dcuC" /locus_tag="STM0627" /note="putative RBS for dcuC; RegulonDB:STMS1H000953" gene 692158..692730 /gene="pagP" /locus_tag="STM0628" /db_xref="GeneID:1252148" CDS 692158..692730 /gene="pagP" /locus_tag="STM0628" /note="PagP (gi|3789781)" /codon_start=1 /transl_table=11 /product="PhoPQ-activated gene" /protein_id="NP_459620.1" /db_xref="GeneID:1252148" /translation="MYVAMIIRKYFLIIALLLMPWLAIPSVSAADKGGFNTFTDNVAE TWRQPEHYDLYVPAITWHARFAYDKEKTDRYNERPWGVGFGQSRWDDKGNWHGLYMMA FKDSFNKWEPIGGYGWEKTWRPLEDDNFRLGLGFTAGVTARDNWNYIPIPVLLPLASI GYGPATFQMTYIPGSYNNGNVYFAWMRFQF" misc_feature 692176..692727 /gene="pagP" /locus_tag="STM0628" /note="lipid IV(A) palmitoyltransferase PagP; Region: pagP; PRK11045" /db_xref="CDD:236829" gene 692906..693127 /gene="cspE" /locus_tag="STM0629" /db_xref="GeneID:1252149" regulatory 692906..692911 /regulatory_class="ribosome_binding_site" /gene="cspE" /locus_tag="STM0629" /note="putative RBS for cspE; RegulonDB:STMS1H000954" CDS 692918..693127 /gene="cspE" /locus_tag="STM0629" /note="similar to E. coli cold shock protein (AAC73724.1); Blastp hit to AAC73724.1 (69 aa), 98% identity in aa 1 - 69" /codon_start=1 /transl_table=11 /product="RNA chaperone, negative regulator of cspA transcription" /protein_id="NP_459621.1" /db_xref="GeneID:1252149" /translation="MSKIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTL AEGQRVEFEITNGAKGPSAANVTAL" misc_feature 692918..693124 /gene="cspE" /locus_tag="STM0629" /note="cold shock-like protein CspE; Region: cspE; PRK09507" /db_xref="CDD:169931" misc_feature order(692945..692947,692972..692974,693005..693007, 693092..693094) /gene="cspE" /locus_tag="STM0629" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:239905" misc_feature order(692963..692983,693002..693013) /gene="cspE" /locus_tag="STM0629" /note="RNA-binding motif [active]" /db_xref="CDD:239905" gene complement(693185..693580) /gene="crcB" /locus_tag="STM0630" /db_xref="GeneID:1252150" CDS complement(693185..693568) /gene="crcB" /locus_tag="STM0630" /note="similar to E. coli orf, hypothetical protein (AAC73725.1); Blastp hit to AAC73725.1 (127 aa), 90% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="high-copy crc-csp restores normal chromosome condensation in presence of camphor or mukB mutations" /protein_id="NP_459622.1" /db_xref="GeneID:1252150" /translation="MLQLLLAVFIGGGTGSVARWMLSMRFNPLHQAIPIGTLTANLLG AFIIGMGFAWFNRMTHIDPMWKVLITTGFCGGLTTFSTFSAEVVFLLQEGRFGWALLN VLINLLGSFAMTALAFWLFSAAAAR" misc_feature complement(693188..693568) /gene="crcB" /locus_tag="STM0630" /note="fluoride efflux transporter CrcB; Region: PRK14196" /db_xref="CDD:184564" regulatory complement(693575..693580) /regulatory_class="ribosome_binding_site" /gene="crcB" /locus_tag="STM0630" /note="putative RBS for crcB; RegulonDB:STMS1H000955" gene 693642..694447 /gene="ybeM" /locus_tag="STM0631" /db_xref="GeneID:1252151" regulatory 693642..693647 /regulatory_class="ribosome_binding_site" /gene="ybeM" /locus_tag="STM0631" /note="putative RBS for ybeM; RegulonDB:STMS1H000956" CDS 693659..694447 /gene="ybeM" /locus_tag="STM0631" /note="similar to E. coli putative amidase (AAC73727.1); Blastp hit to AAC73727.1 (187 aa), 77% identity in aa 2 - 187" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_459623.1" /db_xref="GeneID:1252151" /translation="MFVAAGQFVVSSVWEENAQVCVSLMAQAAGRGVSLLVLPEGILA RDDIDLDLPIRAAQPLDGAFMTRLLEESAHNNMTTIFTILVPSTPGRAVNMLVALRAG HIVARYAKLHLYDAFSMQESQSIDAGTVIAPVLDVEGVKVGLMTCYDLRFPDMALALA LQGADVLALPTGWVRGPLKEQQWSTLLAARALDTTSYMIAAGECGNRNIGQSRIIDPL GVTIAAAADRPALIVAEIFRERIDQVREQLPLLQQRRFAPPQLL" misc_feature 693665..694441 /gene="ybeM" /locus_tag="STM0631" /note="deaminated glutathione amidase; Region: de_GSH_amidase; NF033621" /db_xref="CDD:468114" gene 694567..694779 /gene="ybeC" /locus_tag="STM0632" /db_xref="GeneID:1252152" regulatory 694567..694572 /regulatory_class="ribosome_binding_site" /gene="ybeC" /locus_tag="STM0632" /note="putative RBS for ybeC; RegulonDB:STMS1H000957" CDS 694576..694779 /gene="ybeC" /locus_tag="STM0632" /note="sec-independent protein translocase protein TATE. (SW:TATE_SALTY)" /codon_start=1 /transl_table=11 /product="putative Sec-independent protein secretion pathway component" /protein_id="NP_459624.1" /db_xref="GeneID:1252152" /translation="MGEISITKLLVVAALVVLLFGTKKLRTLGGDLGTAIKGFKKAMN DEDAGVKKDVDGSVQAEKLSHKE" misc_feature 694576..694776 /gene="ybeC" /locus_tag="STM0632" /note="twin-arginine translocase subunit TatE; Region: tatE; PRK03625" /db_xref="CDD:179612" gene complement(694865..695846) /gene="lipA" /locus_tag="STM0633" /db_xref="GeneID:1252153" CDS complement(694865..695830) /gene="lipA" /locus_tag="STM0633" /note="similar to E. coli lipoate synthesis, sulfur insertion? (AAC73729.1); Blastp hit to AAC73729.1 (321 aa), 97% identity in aa 1 - 321" /codon_start=1 /transl_table=11 /product="lipoate synthase, an iron-sulfur enzyme" /protein_id="NP_459625.1" /db_xref="GeneID:1252153" /translation="MSKPIVMERGVKYRDADKMALIPVKNVVTERDALLRKPEWMKIK LPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCD VAHGRPVAPDAEEPQKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIRAKS PEIKIETLVPDFRGRMDRALDILNATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLL ERFKEAHPEIPTKSGLMVGLGETNAEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQ RYVSPEEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK" misc_feature complement(694868..695737) /gene="lipA" /locus_tag="STM0633" /note="lipoyl synthase; Provisional; Region: PRK05481" /db_xref="CDD:235493" regulatory complement(695841..695846) /regulatory_class="ribosome_binding_site" /gene="lipA" /locus_tag="STM0633" /note="putative RBS for lipA; RegulonDB:STMS1H000958" gene complement(696036..697002) /gene="ybeF" /locus_tag="STM0634" /db_xref="GeneID:1252154" CDS complement(696036..696989) /gene="ybeF" /locus_tag="STM0634" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73730.1); Blastp hit to AAC73730.1 (266 aa), 68% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459626.1" /db_xref="GeneID:1252154" /translation="MSDNNQAERQPADQHLQDKPQIFRTLRNIDLNLLTIFEAVYVHK GIVNAAKILNLTPSAISQSIQKLRTIFPDPLFIRKGQGVTPTTYATHLHEYISQGLES ILGALDLTGSYDKQRTITIGTTPSVGALVMPIIYQAIRPRYPQLLLRNIPVDDAESQL SQFQTDLIINTHSYNNRSIQHHVLFSDTLEIVCRQHHPCLANAITEERLNSADHTFLM LEGQHLSLLRQRLQETFPDQQISFSSYNIFTIASLIASSDLLGLMPTRFYDLFSRCWP LERLPYAPVNSEQVEFSLHYNKLSLRDPVLENVIDIIREAF" misc_feature complement(696039..696989) /gene="ybeF" /locus_tag="STM0634" /note="DNA-binding transcriptional regulator; Region: PRK11482" /db_xref="CDD:183159" regulatory complement(696997..697002) /regulatory_class="ribosome_binding_site" /gene="ybeF" /locus_tag="STM0634" /note="putative RBS for ybeF; RegulonDB:STMS1H000959" gene complement(697291..697872) /gene="lipB" /locus_tag="STM0635" /db_xref="GeneID:1252155" CDS complement(697291..697866) /gene="lipB" /locus_tag="STM0635" /EC_number="6.-.-.-" /note="similar to E. coli protein of lipoate biosynthesis (AAC73731.1); Blastp hit to AAC73731.1 (191 aa), 91% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="putative ligase in lipoate biosynthesis" /protein_id="NP_459627.3" /db_xref="GeneID:1252155" /translation="MHNFTDMRDENSHDEIWLVEHYPVFTQGQAGKAEHILMPGDIPV VQSDRGGQVTYHGPGQQVMYVLLNLKRRKLGVRDLVTLLEQTVVNTLAEIGIEAHPRA DAPGVYVGEKKICSLGLRIRRGCSFHGLALNVNMDLSPFLRINPCGYAGMEMAKITQW KEDATTDNIAPRLLANILALLNNPPYEYIAA" misc_feature complement(697351..697866) /gene="lipB" /locus_tag="STM0635" /note="lipoyl(octanoyl) transferase LipB; Region: PRK14342" /db_xref="CDD:237681" misc_feature complement(order(697474..697482,697513..697521, 697528..697530,697675..697677,697699..697701, 697705..697716,697720..697722)) /gene="lipB" /locus_tag="STM0635" /note="active site" /db_xref="CDD:319743" regulatory complement(697867..697872) /regulatory_class="ribosome_binding_site" /gene="lipB" /locus_tag="STM0635" /note="putative RBS for lipB; RegulonDB:STMS1H000960" gene complement(698032..698306) /gene="ybeD" /locus_tag="STM0636" /db_xref="GeneID:1252156" CDS complement(698032..698295) /gene="ybeD" /locus_tag="STM0636" /note="similar to E. coli orf, hypothetical protein (AAC73732.1); Blastp hit to AAC73732.1 (87 aa), 97% identity in aa 1 - 87" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459628.1" /db_xref="GeneID:1252156" /translation="MKTKLNELLEFPTPFTYKVMGQALPELVDQVVEVVQRHAPGDYS PTVKPSSKGNYHSVSITINATHIEQVETLYEELGNIDIVRMVL" misc_feature complement(698035..698295) /gene="ybeD" /locus_tag="STM0636" /note="hypothetical protein; Provisional; Region: PRK04998" /db_xref="CDD:179912" regulatory complement(698301..698306) /regulatory_class="ribosome_binding_site" /gene="ybeD" /locus_tag="STM0636" /note="putative RBS for ybeD; RegulonDB:STMS1H000961" gene complement(698404..699615) /gene="dacA" /locus_tag="STM0637" /db_xref="GeneID:1252157" CDS complement(698404..699615) /gene="dacA" /locus_tag="STM0637" /EC_number="3.4.16.4" /note="similar to E. coli D-alanyl-D-alanine carboxypeptidase, fraction A; penicillin-binding protein 5 (AAC73733.1); Blastp hit to AAC73733.1 (403 aa), 95% identity in aa 1 - 403" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein 5" /protein_id="NP_459629.1" /db_xref="GeneID:1252157" /translation="MKTTFSARFMQRMALTTALCAAFISTAHADDLNIKTMIPGVPQI DAESYILIDYNSGKVLAEQNADERRDPASLTKMMTSYVIGQAMKAGKFKETDLVTVGN DAWATGNPVFKGSSLMFLKPGMQVPVSQLIRGINLQSGNDACVAMADFAAGSQDAFVG LMNSYVNALGLKNTHFQTVHGLDADGQYSSARDMALIGQALIRDVPNEYAVYKEKEFT FNGIRQLNRNGLLWDNSLNVDGIKTGHTSKAGYNLVASATEGQMRLISAVMGGRTYKG RETESKKLLTWGFRFFETVNPLKAGKEFASEPAWFGNTDRASLGVDKDVYLTIPRGRM KDLKASYVLNTAELHAPLQKNQVVGTINFQLDGKTIEQRPLVVLQEIPEGNFFGKIID YIKLMFHHWFG" misc_feature complement(698407..699615) /gene="dacA" /locus_tag="STM0637" /note="D-alanyl-D-alanine carboxypeptidase fraction A; Provisional; Region: PRK10793" /db_xref="CDD:182736" gene complement(699755..700912) /gene="rlpA" /locus_tag="STM0638" /db_xref="GeneID:1252158" CDS complement(699755..700900) /gene="rlpA" /locus_tag="STM0638" /note="similar to E. coli a minor lipoprotein (AAC73734.1); Blastp hit to AAC73734.1 (362 aa), 68% identity in aa 1 - 362" /codon_start=1 /transl_table=11 /product="a minor lipoprotein" /protein_id="NP_459630.1" /db_xref="GeneID:1252158" /translation="MRKQLPVICVAAGIVLLAACTNDGGQQQTTVAPQPAVCNGPTVE ISGAEPRYEPLNPTANQDYQRDGKSYKIVQDPSRFSQAGLAAIYDAEPGSNLTASGEM FDPMQLTAAHPTLPIPSYARITNLANGRMIVVRINDRGPYGTDRVISLSRAAADRLNT SNNTKVRIDPIIVAPDGSLSGPGMACTTVAKQTYALPPRPDLSGGMGSASSAPAQPQG DVLPVSNSTLKSDDTTGAPVSSSGFLGAPTTLAPGVLESNEPTPAPQPAPVSAPVAAP ATAPATATPVSAPAAAAPVSAPVSAPAAAASGRFVVQVGAVSDQTRAQQYQQRLSQQF SVPGRVIQNGAVWRIQLGPFASKAEASALQQRLQTEAQLQSFIASAQ" misc_feature complement(699758..700900) /gene="rlpA" /locus_tag="STM0638" /note="endolytic peptidoglycan transglycosylase RlpA; Region: PRK10672" /db_xref="CDD:236733" regulatory complement(700907..700912) /regulatory_class="ribosome_binding_site" /gene="rlpA" /locus_tag="STM0638" /note="putative RBS for rlpA; RegulonDB:STMS1H000962" gene complement(700911..702037) /gene="mrdB" /locus_tag="STM0639" /db_xref="GeneID:1252159" CDS complement(700911..702023) /gene="mrdB" /locus_tag="STM0639" /note="similar to E. coli rod shape-determining membrane protein; sensitivity to radiation and drugs (AAC73735.1); Blastp hit to AAC73735.1 (370 aa), 98% identity in aa 1 - 370" /codon_start=1 /transl_table=11 /product="rod shape-determining membrane protein; cell elongation in e phase" /protein_id="NP_459631.1" /db_xref="GeneID:1252159" /translation="MTDNPNKKTFWDKIHIDPTMLLILLALLVYSALVIWSASGQDIG MMERKIGQIAMGLVVMVVMAQIPPRVYEGWAPYLYIICIILLVAVDAFGAISKGAQRW LDLGIVRFQPSEIAKIAVPLMVARFINRDVCPPSLKNTAIALVLIFMPTLLVAAQPDL GTSILVALSGLFVLFLSGLSWRLIGVAIVLIAAFIPILWFFLMHDYQRQRVMMLLDPE TDPLGAGYHIIQSKIAIGSGGLRGKGWLHGTQSQLEFLPERHTDFIFAVLAEELGLVG ILILLALYILLIMRGLWIAARAQTTFGRVMAGGLMLILFVYVFVNIGMVSGILPVVGV PLPLVSYGGSALIVLMAGFGIVMSIHTHRKMLSKSV" misc_feature complement(700914..702023) /gene="mrdB" /locus_tag="STM0639" /note="rod shape-determining protein RodA; Region: PRK10794" /db_xref="CDD:182737" gene complement(702026..703945) /gene="mrdA" /locus_tag="STM0640" /db_xref="GeneID:1252160" CDS complement(702026..703927) /gene="mrdA" /locus_tag="STM0640" /note="similar to E. coli cell elongation, e phase; peptidoglycan synthetase; penicillin-binding protein 2 (AAC73736.1); Blastp hit to AAC73736.1 (633 aa), 96% identity in aa 1 - 632" /codon_start=1 /transl_table=11 /product="cell elongation specific transpeptidase of penicillin-binding protein 2 (peptidoglycan synthetase)" /protein_id="NP_459632.1" /db_xref="GeneID:1252160" /translation="MKRQNSFRDYTAESALFVRRALVAFLGILLLTGVLIANLYNLQI LRFTDYQTRSNENRIKLVPIAPSRGIIYDRNGIPLALNRTIYQIEMMPEKVDNVQQTL DALRSVVDLNDDDIAAFKKERARSHRFTSIPVKTNLTEVQVARFAVNQYRFPGVEVKG YKRRYYPYGSALTHVIGYVSKINDKDVERLDRENKLANYAATHDIGKLGIERYYEDIL HGQTGYEEVEVNNRGRVIRQLKEVPPQAGHDIYLTLDLKLQQYIETLLAGSRAAVIVT DPRTGGVLSLVSMPSYDPNLFVDGISSKDYSGLLNDPNTPLVNRATQGVYPPASTVKP YVAVSALSAGVITRNTSLFDPGWWQLPGSEKRYRDWKKWGHGHLNITKSLEESADTFF YQVAYDMGIDRLSEWMGKFGYGHYTGIDLAEERSGNMPTREWKQKRFKKPWYQGDTIP VGIGQGYWTATPIQMSKALMILINDGVVKVPHLLMSTAENGKQVPWVQPHEPPVGDIH SGYWEIAKDGMYGVANRPNGTAHKYFASAPYKIAAKSGTAQVFGLKANETYNAHKIAE RLRDHKLMTAFAPYNNPQVAVAIILENGGAGPAVGTIMRQILDHIMLGDNNTHLPAEN PVVAAAEDQ" misc_feature complement(702029..703927) /gene="mrdA" /locus_tag="STM0640" /note="penicillin-binding protein 2; Provisional; Region: PRK10795" /db_xref="CDD:236761" regulatory complement(702032..702037) /regulatory_class="ribosome_binding_site" /gene="mrdB" /locus_tag="STM0639" /note="putative RBS for mrdB; RegulonDB:STMS1H000963" regulatory complement(703940..703945) /regulatory_class="ribosome_binding_site" /gene="mrdA" /locus_tag="STM0640" /note="putative RBS for mrdA; RegulonDB:STMS1H000964" gene complement(703958..704438) /gene="ybeA" /locus_tag="STM0641" /db_xref="GeneID:1252161" CDS complement(703958..704425) /gene="ybeA" /locus_tag="STM0641" /note="similar to E. coli orf, hypothetical protein (AAC73737.1); Blastp hit to AAC73737.1 (155 aa), 98% identity in aa 1 - 155" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459633.1" /db_xref="GeneID:1252161" /translation="MKLQLVAVGTKMPDWVQTGFTEYLRRFPKDMPFELIEIPAGKRG KNADIKRILDKEGEQMLAAAGKNRIVTLDIPGKPWDTPQLANELERWKQDGRDVSLLI GGPEGLSPACKAAAEQSWSLSALTLPHPLVRVLVAESLYRAWSITTNHPYHRE" misc_feature complement(703964..704422) /gene="ybeA" /locus_tag="STM0641" /note="rRNA large subunit m3Psi methyltransferase RlmH; Region: tRNA_RlmH_YbeA; TIGR00246" /db_xref="CDD:129349" misc_feature complement(order(704000..704002,704009..704014, 704021..704026,704033..704035,704042..704062, 704066..704068,704183..704194,704357..704362, 704369..704374,704378..704386)) /gene="ybeA" /locus_tag="STM0641" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349954" misc_feature complement(order(704030..704032,704045..704053, 704057..704068,704105..704107,704111..704122, 704204..704212)) /gene="ybeA" /locus_tag="STM0641" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:349954" gene complement(704429..704758) /gene="ybeB" /locus_tag="STM0642" /db_xref="GeneID:1252162" CDS complement(704429..704746) /gene="ybeB" /locus_tag="STM0642" /note="similar to E. coli orf, hypothetical protein (AAC73738.1); Blastp hit to AAC73738.1 (69 aa), 95% identity in aa 1 - 69" /codon_start=1 /transl_table=11 /product="putative ACR, homolog of plant Iojap protein" /protein_id="NP_459634.1" /db_xref="GeneID:1252162" /translation="MQGKALQDFVIDKIDDLKGQDIIALDVQGKSSITDCMIICTGTS SRHVMSIADHVVQSSRAAGMLPLGVEGENAADWIVVDLGDVIVHVMQEESRRLYELEK LWS" misc_feature complement(704432..704746) /gene="ybeB" /locus_tag="STM0642" /note="ribosome silencing factor; Region: PRK11538" /db_xref="CDD:183184" regulatory complement(704433..704438) /regulatory_class="ribosome_binding_site" /gene="ybeB" /locus_tag="STM0642" /note="putative RBS for ybeA; RegulonDB:STMS1H000965" regulatory complement(704753..704758) /regulatory_class="ribosome_binding_site" /gene="ybeB" /locus_tag="STM0642" /note="putative RBS for ybeB; RegulonDB:STMS1H000966" gene complement(705075..705693) /gene="cobC" /locus_tag="STM0643" /db_xref="GeneID:1252163" CDS complement(705075..705683) /gene="cobC" /locus_tag="STM0643" /EC_number="3.1.3.-" /note="alpha-ribazole-5'-phosphate phosphatase" /codon_start=1 /transl_table=11 /product="alpha ribazole-5'-P phosphatase in cobalamin synthesis" /protein_id="NP_459635.1" /db_xref="GeneID:1252163" /translation="MRLWLVRHGETEANVAGLYSGHAPTPLTEKGIGQAKTLHTLLRH APFDRVLCSELERARHTARLVLEGRDVPQHILPELNEMYFGDWEMRHHRDLTHEDAES YAAWCTDWQNAVPTNGEGFQAFTRRVERFISRLDAFSDCQNLLIVSHQGVLSLLIARL LTMPAASLWHFRVEQGCWSAIDICEGFATLKVLNSRAVWRPE" misc_feature complement(705087..705683) /gene="cobC" /locus_tag="STM0643" /note="adenosylcobalamin/alpha-ribazole phosphatase; Region: PRK15004" /db_xref="CDD:184966" misc_feature complement(order(705234..705239,705513..705515, 705660..705665)) /gene="cobC" /locus_tag="STM0643" /note="catalytic core [active]" /db_xref="CDD:132718" regulatory complement(705688..705693) /regulatory_class="ribosome_binding_site" /gene="cobC" /locus_tag="STM0643" /note="putative RBS for cobC; RegulonDB:STMS1H000967" gene 705773..706874 /gene="cobD" /locus_tag="STM0644" /db_xref="GeneID:1252164" regulatory 705773..705778 /regulatory_class="ribosome_binding_site" /gene="cobD" /locus_tag="STM0644" /note="putative RBS for cobD; RegulonDB:STMS1H000968" CDS 705780..706874 /gene="cobD" /locus_tag="STM0644" /note="CobD (gi|1895094)" /codon_start=1 /transl_table=11 /product="putative aminotransferase in cobalamin synthesis" /protein_id="NP_459636.1" /db_xref="GeneID:1252164" /translation="MALFNSAHGGNIREAATVLGISPDQLLDFSANINPLGMPVSVKR ALIDNLDCIERYPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGLKPRRAM IVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALTPDLDCLFLCTPNNPTG LLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY AIPGLRLGYLVNSDDAAMARMRRQQMPWSVNALAALAGEVALQDSAWQQATWHWLREE GARFYQALCQLPLLTVYPGRANYLLLRCEREDIDLQRRLLTQRILIRSCANYPGLDSR YYRVAIRSAAQNERLLAALRNVLTGIAPAD" misc_feature 705801..706841 /gene="cobD" /locus_tag="STM0644" /note="L-threonine-O-3-phosphate decarboxylase; Region: L_thr_O3P_dcar; TIGR01140" /db_xref="CDD:273466" gene complement(706849..707499) /gene="nadD" /locus_tag="STM0645" /db_xref="GeneID:1252165" CDS complement(706849..707490) /gene="nadD" /locus_tag="STM0645" /EC_number="2.7.7.18" /note="similar to E. coli orf, hypothetical protein (AAC73740.1); Blastp hit to AAC73740.1 (213 aa), 85% identity in aa 1 - 213" /codon_start=1 /transl_table=11 /product="putative nicotinic acid mononucleotide adenylyltransferase" /protein_id="NP_459637.1" /db_xref="GeneID:1252165" /translation="MKSLQALFGGTFDPVHYGHLKPVETLANLIGLSRVIIMPNNVPP HRPQPEASSAQRKYMLELAIADKPLFTLDERELQRNAPSYTAQTLKAWREEQGPEAPL AFIIGQDSLLNFPTWHDYDTILDNTHLIVCRRPGYPLEMTQAQHQQWLEQHLTHTPDD LHQLPAGKIYLAETPWLNISATLIRERLEKGESCDDLLPENVLNYINQQGLYR" misc_feature complement(706852..707490) /gene="nadD" /locus_tag="STM0645" /note="nicotinate-nucleotide adenylyltransferase; Region: nadD; PRK00071" /db_xref="CDD:234611" misc_feature complement(order(706954..706956,707089..707094, 707137..707142,707161..707166,707170..707175, 707179..707181,707236..707244,707362..707364, 707425..707427,707434..707439,707443..707445, 707455..707469)) /gene="nadD" /locus_tag="STM0645" /note="active site" /db_xref="CDD:185680" misc_feature complement(707434..707445) /gene="nadD" /locus_tag="STM0645" /note="(T/H)XGH motif; other site" /db_xref="CDD:185680" gene complement(707492..708523) /gene="holA" /locus_tag="STM0646" /db_xref="GeneID:1252166" CDS complement(707492..708523) /gene="holA" /locus_tag="STM0646" /EC_number="2.7.7.7" /note="similar to E. coli DNA polymerase III, delta subunit (AAC73741.1); Blastp hit to AAC73741.1 (343 aa), 89% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="DNA polymerase III, delta subunit" /protein_id="NP_459638.1" /db_xref="GeneID:1252166" /translation="MIRLYPEQLRAQLNEGLRAAYLLLGNDPLLLQESQDAIRLAAAS QGFEEHHAFTLDPSTDWGSLFSLCQAMSLFASRQTLVLQLPENGPNAAMNEQLATLSE LLHDDLLLIVRGNKLTKAQENAAWYTALADRSVQVSCQTPEQAQLPRWVAARAKAQNL QLDDAANQLLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWV DALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKH RVWQNRRPMIGDALQRLHPAQLRQAVQLLTRTEITLKQDYGQSVWADLEGLSLLLCHK ALADVFIDG" misc_feature complement(707528..708430) /gene="holA" /locus_tag="STM0646" /note="DNA polymerase III, delta subunit; Region: holA; TIGR01128" /db_xref="CDD:273455" regulatory complement(707494..707499) /regulatory_class="ribosome_binding_site" /gene="nadD" /locus_tag="STM0645" /note="putative RBS for nadD; RegulonDB:STMS1H000969" gene complement(708523..709121) /gene="rlpB" /locus_tag="STM0647" /db_xref="GeneID:1252167" CDS complement(708523..709113) /gene="rlpB" /locus_tag="STM0647" /note="similar to E. coli a minor lipoprotein (AAC73742.1); Blastp hit to AAC73742.1 (193 aa), 79% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="a minor lipoprotein" /protein_id="NP_459639.1" /db_xref="GeneID:1252167" /translation="MRYLVTLLLSLAVLVTAGCGWHLRSTTQVPASMKTMILDSGDPN GPLSRAVRNQLRLNNVNLLDKDTTRKDVPSLRLGTVTILQDTASVFQDGQTAEYQMVM TVNASVLIPGHDIYPISTKVYRSFFDNPQMALAKDNEQAMIVQEMYDKAAEQLIRKLT SVRAADIQATKEEATADNETAAPASTPARVSTTLSN" misc_feature complement(708538..709113) /gene="rlpB" /locus_tag="STM0647" /note="LPS-assembly lipoprotein RlpB; Provisional; Region: PRK10796" /db_xref="CDD:236762" regulatory complement(709116..709121) /regulatory_class="ribosome_binding_site" /gene="rlpB" /locus_tag="STM0647" /note="putative RBS for rlpB; RegulonDB:STMS1H000970" gene complement(709128..711727) /gene="leuS" /locus_tag="STM0648" /db_xref="GeneID:1252168" CDS complement(709128..711710) /gene="leuS" /locus_tag="STM0648" /EC_number="6.1.1.4" /note="similar to E. coli leucine tRNA synthetase (AAC73743.1); Blastp hit to AAC73743.1 (860 aa), 95% identity in aa 1 - 860" /codon_start=1 /transl_table=11 /product="leucine tRNA synthetase" /protein_id="NP_459640.1" /db_xref="GeneID:1252168" /translation="MQEQYRPEEIESKVQLHWDEKRTFEVTEDESKEKYYCLSMLPYP SGRLHMGHVRNYTIGDVVARYQRMLGKNVLQPIGWDAFGLPAEGAAVKNNTAPAPWTY DNIAYMKNQLKTLGFGYDWSREIATCTPEYYRWEQKFFTELYKKGLVYKKTSAVNWCP NDQTVLANEQVIDGCCWRCDTKVERKEIPQWFIKITAYADELLRDLDKLDHWPDTVKT MQRNWIGRSEGVEITFDVKGYDNTLTVYTTRPDTFMGATYLAVAAGHPLAQKAAANNA ELAAFIDECRNTKVAEAEMATMEKKGVDTGYKAIHPLTGEEIPVWAANFVLMEYGTGA VMAVPGHDQRDYEFASKYGLTIKPVILAADGSEPDLSEQALTEKGVLFNSGEFDGLAF EAAFNAIADKLAEKGVGERKVNYRLRDWGVSRQRYWGAPIPMVTLEDGTVLPTPEDQL PVILPEDVVMDGITSPIKADPEWAKTTVNGMPALRETDTFDTFMESSWYYARYTCPQY QEGMLDSKAANYWLPVDIYIGGIEHAIMHLLYFRFFHKLMRDAGMVTSDEPAKQLLCQ GMVLADAFYYVGENGERNWVSPVDAIVERDEKGRIVKAKDAAGHELVYTGMSKMSKSK NNGIDPQVMVERYGADTVRLFMMFASPADMTLEWQESGVEGANRFIKRVWKLVYEHTA KGPVAALNVDALSEDQKALRRDVHKTIAKVTDDIGRRQTFNTAIAAIMELMNKLAKAP QEGEQDRALLQEALQAVVRMLNPFTPHVCFTLWQELGGEGDIDNAPWPVADEQAMVEN TTLVVVQVNGKVRGKITVPVDATEEQVRERAGQEHLVAKYLDGVTVRKVIYVPGKLLN LVVG" misc_feature complement(709131..711710) /gene="leuS" /locus_tag="STM0648" /note="Leucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: LeuS; COG0495" /db_xref="CDD:440261" regulatory complement(711722..711727) /regulatory_class="ribosome_binding_site" /gene="leuS" /locus_tag="STM0648" /note="putative RBS for leuS; RegulonDB:STMS1H000971" gene 711947..712288 /locus_tag="STM0649" /db_xref="GeneID:1252169" CDS 711947..712288 /locus_tag="STM0649" /note="similar to E. coli altronate hydrolase (AAC76126.1); Blastp hit to AAC76126.1 (495 aa), 38% identity in aa 4 - 82" /codon_start=1 /transl_table=11 /product="putative hydrolase N-terminus" /protein_id="NP_447100.1" /db_xref="GeneID:1252169" /translation="MARLLIREDRTKAKELIVKKNAVVIHPQDCVATAITALKAGETA TMFIGEREISVVLHQDVPFGHKFAICDVPFHGEVYKYGESIGRATQEIKSGDYVHVHN VESERGRGDWK" misc_feature 712007..712258 /locus_tag="STM0649" /note="Domains similar to fish antifreeze type III protein; Region: SAF_AH_GD; cd11613" /db_xref="CDD:212158" gene 712300..713477 /locus_tag="STM0650" /db_xref="GeneID:1252170" regulatory 712300..712305 /regulatory_class="ribosome_binding_site" /locus_tag="STM0650" /note="putative RBS for STM0650; RegulonDB:STMS1H000972" CDS 712305..713477 /locus_tag="STM0650" /EC_number="4.2.1.7" /EC_number="6.1.1.4" /note="similar to E. coli putative hydrolase (AAC76162.1); Blastp hit to AAC76162.1 (523 aa), 35% identity in aa 167 - 521, 32% identity in aa 119 - 223" /codon_start=1 /transl_table=11 /product="putative hydrolase C-terminus" /protein_id="NP_447101.1" /db_xref="GeneID:1252170" /translation="MIMSNETFLGFRRPDGRFGIRNYVLILPTSVCANKVAQDIARQV KGATWVNNDFGCCQVAGDARLTEKTLINVANNPNVGAIVVVGLGCEGAEPLRIAEEIT AFGKPTSCITIQEEGGTLKCQARGISLARDYAQQLSMQKPQQAPVSELLLAMECGGSD TTSGLASNPSCGVASDKLIRCGGSSILSETTEFIGAEHVMAKRAVTPEVGQQLIDLVV GCEARAKALGEDIRGGQPTPGNIKGGLTTIEEKSLGCMHKAGHAPLQGVLEYADSPTH PGLWIMDTPGQDIESISGMVAGGAQIVIFTTGRGTPAGNPIAPVIKITGNKATWEMMQ DNIDIDVSAIMSGEASITQMGEEIYQEILRVANGKTTKSEDLGHNEFSIYKIAPTF" misc_feature <712311..713474 /locus_tag="STM0650" /note="Altronate dehydratase [Carbohydrate transport and metabolism]; Region: UxaA; COG2721" /db_xref="CDD:442034" gene 713522..714480 /locus_tag="STM0651" /db_xref="GeneID:1252171" regulatory 713522..713527 /regulatory_class="ribosome_binding_site" /locus_tag="STM0651" /note="putative RBS for STM0651; RegulonDB:STMS1H000973" CDS 713527..714480 /locus_tag="STM0651" /note="similar to E. coli 2-keto-3-deoxy-D-gluconate transport system (AAC76891.1); Blastp hit to AAC76891.1 (330 aa), 38% identity in aa 4 - 315" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_459643.1" /db_xref="GeneID:1252171" /translation="MKIKKTLERFPGGMMVVPLIIGALFKTFAPEALEIGGFVTSISH GAMAILGMFLVCMGADIQFKAAPKALKKGAAITFAKFASGVIIGILVGKFCGPDGLLG LSALAIISAMTNSNSGLYAALVGEYGDETDGGAIAVISLNDGPFFTMLALGSAGMVSI PFMNLVAVIIPIIIGMILGNLDEDMRKFLKQGSVVTIPFFAFGLGYGIDFARLITAGS SGILLGLMTVAIGGFFNIFADRLTGGSGVAGAAVSTTSGNAVATPAAIALLDPHFTDL ASTAAAQVAASTIITALCAPFLTVWIKKRYDRKLNPAAAGG" misc_feature 713539..714423 /locus_tag="STM0651" /note="2-keto-3-deoxygluconate permease; Region: KdgT; pfam03812" /db_xref="CDD:461060" gene 714541..716476 /locus_tag="STM0652" /db_xref="GeneID:1252172" regulatory 714541..714546 /regulatory_class="ribosome_binding_site" /locus_tag="STM0652" /note="putative RBS for STM0652; RegulonDB:STMS1H000974" CDS 714548..716476 /locus_tag="STM0652" /note="similar to E. coli response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) (AAC75280.1); Blastp hit to AAC75280.1 (461 aa), 37% identity in aa 67 - 453" /codon_start=1 /transl_table=11 /product="putative sigma-54 dependent transcriptional regulator" /protein_id="NP_459644.1" /db_xref="GeneID:1252172" /translation="MNKTKDIAASPLCFVSPYPQLAKAAEALVAQLDYAVTIHQTTLN RILDELPLLESRGHQVLISRGGCAEILKKHSKLPVVEIKMSGYDILDALIPFKGQKGT VGIVGFSSVIKGCARVAEQLNINYKIFTLQGNDKETISCLKRQLASTPLDCIVGDTVC QDYFSPLGSQFRLLDSSPASITEALEEARSLYLAFRSQLLERHHLQLILDQFDKAVIT LDDTGALLHYNKYASQLFKINASGEIYDASFLKQVLHQERHTLREGKTVSAKVVDTPQ GAMVVNLYPVFAARQLSRVVLTMQTVSSLQGAEHHVRRQELSRRGLSARYHFDDLLTE NPEMLRRLAIIKNYAGTDATILINGESGTGKEVLAQSIHNASQRVNGPFVAINCGAMA PQILESELFGYVAGAFTGASPKGKIGLFELAHHGTIFLDEISELDKPLQTRLLRVLQE RQIMRLGSDQMIPVDIRVIAATNQTLTKLIADGTFREDLYYRLNVLKVTTIPLRKRPE DIKAIGLSLLTSFSQHYKRPALTLTPALWQELQRFAWPGNVRQLSNIIERLVLSIDHS PATLDEGRLLLDDLEEGSRREPTTCHDCQMLAGDYKTIRLRILRKLLEAERDNKSLVA KRLNVDRTSLTRWIRESA" misc_feature 714641..715135 /locus_tag="STM0652" /note="Propionate catabolism activator; Region: PrpR_N; pfam06506" /db_xref="CDD:428980" misc_feature 715160..716467 /locus_tag="STM0652" /note="RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms]; Region: RocR; COG3829" /db_xref="CDD:443041" gene 716558..717042 /gene="ybeL" /locus_tag="STM0653" /db_xref="GeneID:1252173" regulatory 716558..716563 /regulatory_class="ribosome_binding_site" /gene="ybeL" /locus_tag="STM0653" /note="putative RBS for ybeL; RegulonDB:STMS1H000975" CDS 716569..717042 /gene="ybeL" /locus_tag="STM0653" /note="similar to E. coli putative alpha helical protein (AAC73744.1); Blastp hit to AAC73744.1 (160 aa), 91% identity in aa 1 - 160" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459645.1" /db_xref="GeneID:1252173" /translation="MNKVAQYYRELVASLSERLRNGERDIDALVEQARQRVMQTGELT RTEVDELTRAVRRDLEEFAMSYEESQDDSVFLRVIKESLWQELADITDKTQLEWREVF QDLNHHGVYHSGEVVGLGNLVCEKCHYHLAVYTPDVLPLCPKCGHDQFQRRPFEP" misc_feature 716569..717039 /gene="ybeL" /locus_tag="STM0653" /note="zinc ribbon-containing protein; Region: PRK11032" /db_xref="CDD:182915" gene complement(717081..718096) /gene="ybeQ" /locus_tag="STM0654" /db_xref="GeneID:1252174" CDS complement(717081..718076) /gene="ybeQ" /locus_tag="STM0654" /note="similar to E. coli orf, hypothetical protein (AAC73745.1); Blastp hit to AAC73745.1 (327 aa), 36% identity in aa 6 - 307" /codon_start=1 /transl_table=11 /product="putative TPR repeat protein" /protein_id="NP_459646.1" /db_xref="GeneID:1252174" /translation="MNHSITSHPCDNVSLAQLTELAQSGNSEAQYILGRLYNDERIDG SEEDKLSFYWLQQAAEQGHCEAQYWLGLRYKDTPTDMKDNTLALFWSEKAAQQGHRHA FNTLGWVQEGETGMAPDYAQAVAWYRKGAEQSHNLAQYNLGRMYHSGTGVEQNDTQAL YWFKQAALQGHCASQERLAYMYGNGKGCRKNLSLAALWYKKSALQESSYSQYQMGYCY YIGKGIKQDYQQAIYWFRKAADQGDDDAYNSIGWMYKCGHGVEQNYSLALEWFHKSAE CNNSSGWYNLGCMYRDGHGTAQDLQQALYWFKKAQPTGKWNVDEEIRKLEAQLHA" misc_feature complement(717675..>718013) /gene="ybeQ" /locus_tag="STM0654" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature complement(717849..717935) /gene="ybeQ" /locus_tag="STM0654" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(717741..717830) /gene="ybeQ" /locus_tag="STM0654" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(717147..717797) /gene="ybeQ" /locus_tag="STM0654" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature complement(717633..717722) /gene="ybeQ" /locus_tag="STM0654" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(717525..717614) /gene="ybeQ" /locus_tag="STM0654" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(717417..717506) /gene="ybeQ" /locus_tag="STM0654" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" regulatory complement(718091..718096) /regulatory_class="ribosome_binding_site" /gene="ybeQ" /locus_tag="STM0654" /note="putative RBS for ybeQ; RegulonDB:STMS1H000976" gene 718188..718908 /gene="ybeR" /locus_tag="STM0655" /db_xref="GeneID:1252175" regulatory 718188..718193 /regulatory_class="ribosome_binding_site" /gene="ybeR" /locus_tag="STM0655" /note="putative RBS for ybeR; RegulonDB:STMS1H000977" CDS 718201..718908 /gene="ybeR" /locus_tag="STM0655" /note="similar to E. coli orf, hypothetical protein (AAC73746.1); Blastp hit to AAC73746.1 (235 aa), 62% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459647.1" /db_xref="GeneID:1252175" /translation="MDKESQYLLFALSSPMEVLNEDCLPSHSSPKMYLGVKRFDLESS WGIENRDELLQTISRRTDDGHATQLEWLYRRWFRYAPQEWQEYTDALDEGDRIYARFV ADTAVCCGEGGIRSWDYVRMGFLCRMGVLNEWLTEEESLWLQSRIQLRALSYYSGWLP YFSAYYTGRLYWQLRNGDNLPLLRETFARKEFDDAGRRMMNKLIAGKDSFYATLPWRY LPHYPECPDTLQEVSDL" misc_feature 718318..718848 /gene="ybeR" /locus_tag="STM0655" /note="Protein of unknown function (DUF1266); Region: DUF1266; pfam06889" /db_xref="CDD:462031" gene 718897..720338 /gene="ybeS" /locus_tag="STM0656" /db_xref="GeneID:1252176" regulatory 718897..718902 /regulatory_class="ribosome_binding_site" /gene="ybeR" /locus_tag="STM0655" /note="putative RBS for ybeS; RegulonDB:STMS1H000978" CDS 718905..720338 /gene="ybeS" /locus_tag="STM0656" /note="similar to E. coli putative enzyme of polynucleotide modification (AAC73747.1); Blastp hit to AAC73747.1 (475 aa), 45% identity in aa 1 - 474" /codon_start=1 /transl_table=11 /product="putative molecular chaperone, DnaJ family" /protein_id="NP_459648.1" /db_xref="GeneID:1252176" /translation="MKTCWQVLGIEATTDTDAIRQAYLALLPSFHPETDPQGFKQLRE AYENALQGTTSPAITVVDEDPDTPWVNYLREIFGDLLADGERRFQPQAWQEFIQQINK LSISQVEKSRWWLCAIAMKTFPISYSCLKLLSDRLAWEQGSDNRDVDAEEVEDLLFEI RRGDLFDYSLLLHLPVAVQNQTIAFYDALDNTFFEHPLYFAQLMAQHGPWIIPDNLRF QRRLLRWFSTLHWGIAELLPVALAWQEAEPDNATPGYYYLAQRVFCGEGDSLLPELYA QWWAHPSTQLDDLLLRWCRQHRPDFFPLLVMAVEGREQVDINAEQLLYIPGSSARSCL LWAEALHSGALSPLSESFIARRLNYGAPAVSEAHSQHPYWLLYQVADSLACAEEPSAA LLQSLVTKLDAPDICPLEALVIRGLLGRAAAVATPCEAVVADEEPVTTVTSPSTEESG GGFGLWQVIKIILFIGVVGHVLRQFMH" misc_feature 718905..>719045 /gene="ybeS" /locus_tag="STM0656" /note="Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]; Region: CbpA; COG2214" /db_xref="CDD:441816" gene 720336..721045 /gene="ybeU" /locus_tag="STM0657" /db_xref="GeneID:1252177" regulatory 720336..720341 /regulatory_class="ribosome_binding_site" /gene="ybeU" /locus_tag="STM0657" /note="putative RBS for ybeU; RegulonDB:STMS1H000979" CDS 720350..721045 /gene="ybeU" /locus_tag="STM0657" /note="similar to E. coli putative tRNA ligase (AAC73749.1); Blastp hit to AAC73749.1 (235 aa), 61% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459649.1" /db_xref="GeneID:1252177" /translation="MDKEEQYLLFALSTPMEVLYIGNEPSHTSPAMYTGIPAVDLSDS WGIDNREDLIQTIYRMTDDGHAADLAPFYIRWFTLSPRQWREFTAQFGEQGQIYARFV AETALCCGRGGIKAWDYVRMGFLCRMGVLNQWLTEEESLWLQSRIYARAYYFYDGWTQ YFAAYSLGRLYWQAKGDTIQAYFAHLKYDASGARMFNELASTTESYYAQLPWRPLNEQ PTCPETLKGVSDL" misc_feature 720467..720985 /gene="ybeU" /locus_tag="STM0657" /note="Protein of unknown function (DUF1266); Region: DUF1266; pfam06889" /db_xref="CDD:462031" gene 721026..722514 /gene="ybeV" /locus_tag="STM0658" /db_xref="GeneID:1252178" regulatory 721026..721031 /regulatory_class="ribosome_binding_site" /gene="ybeU" /locus_tag="STM0657" /note="putative RBS for ybeV; RegulonDB:STMS1H000980" CDS 721042..722514 /gene="ybeV" /locus_tag="STM0658" /note="similar to E. coli orf, hypothetical protein (AAC73750.1); Blastp hit to AAC73750.1 (483 aa), 58% identity in aa 1 - 434" /codon_start=1 /transl_table=11 /product="putative molecular chaperone, DnaJ family" /protein_id="NP_459650.1" /db_xref="GeneID:1252178" /translation="MNICWEILGIEPTTDLECIRQAYLALLPSFHPESDPQGFKRLRQ AYEEAQHWAASPAEDAKMEEVGDEHEILVAFRELLASERDRFQPSAWQKFIQQLNQCS MDEIDKLRWQLCDIAMKTETISLSCLALLAQRLNWQPQEAEDDADGEELEAFLETVKR GDAFDLLSLAKLPLVVQDQTDAYFFKLEHIWRFYPEHFADALQVQGAWIIPDDKQLHR KLLHWFSAEQWGMAELVDIARRWQAAEPDNEDAHYYLCKQRLLCGEGESLLADLCDFW QRYPSTQADDLLLGWCRQHRPDFFPLAVMAVEARCMADAEYVPGESARTRLLWADILH SGRLSPLGRSFVDSLFYKRKAMAWANSRLSTQGEPETPLLDLYRTAEQVVLEAFPKEK PFFRLLIRLEEGQSCPLEALITQALSSKIAMKPGDIRDKKELAEELRLAAEKEETKLS SEAKTEAPRQAESGGVMKIMKIVGLIALIVCALNRFFHFF" misc_feature 721051..>721182 /gene="ybeV" /locus_tag="STM0658" /note="Curved DNA-binding protein CbpA, contains a DnaJ-like domain [Transcription]; Region: CbpA; COG2214" /db_xref="CDD:441816" gene complement(722536..724215) /gene="hscC" /locus_tag="STM0659" /db_xref="GeneID:1252179" CDS complement(722536..724215) /gene="hscC" /locus_tag="STM0659" /note="similar to E. coli putative dnaK protein (AAC73751.1); Blastp hit to AAC73751.1 (556 aa), 83% identity in aa 1 - 556" /codon_start=1 /transl_table=11 /product="putative heatshock protein, homolog of hsp70 in Hsc66 subfamily" /protein_id="NP_459651.1" /db_xref="GeneID:1252179" /translation="MDNATLAIGIDLGTTNSLIAVWQDGAAQLIPNKFGEYLTPSIIS MDENKQILVGKPAAARKTSHPDKTAALFKRAMGSNTHWHLGEESFNAPELSSLVLRSL KEDAEDYLQQPIKDVVISVPAYFSDEQRKHTRLAAELAGLNAVRLINEPTAAAMAYGL HTQQNSRSLVFDLGGGTFDVTVLEYATPIIEVHASAGDNYLGGEDFTHLLLDEVLKRW NLDKSALTDSDLAALYACVEAAKCASSSPLRMSWLYQESVLESTFYDDELEALWLPLL NRLRTPIEQALRDSRLKPEQIDSLVLVGGASQMPLVQRIAVRLFGKLPYQSYDPSTIV ALGAATQAACRLRHEDVEEVILTDICPYSLGVEVNRQGVPGIFSPIIERNTTVPVSKV ETYSTMHPEQDSICVRVYQGESHKVKNNILIDSFDVMLKPNGHIQAIDIRFSYDINGL LEVDVLLEDGKSESRIISHNATSLTTQQIDASRERLLALKIYPRDMLINRTFKAQLEE QWSRALGDEREMLGEIITDFDAALLSNDMQRVDDVRRRACEYLGIDEPKAP" misc_feature complement(723175..724194) /gene="hscC" /locus_tag="STM0659" /note="nucleotide-binding domain (NBD) of Escherichia coli chaperone protein HscC and similar proteins; Region: ASKHA_NBD_HSP70_HscC; cd10235" /db_xref="CDD:466833" gene complement(724291..725535) /locus_tag="STM0660" /db_xref="GeneID:1252180" CDS complement(724291..725529) /locus_tag="STM0660" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459652.1" /db_xref="GeneID:1252180" /translation="MFWRNNRPEISLLQHDVAHITFSVRNGKALLRPSVIHDPDSDAG IHTLSWHGSPLIRFYTEAWCPTCAEFVYAGFSNDDEGAAEFLSSLAEWNQPGVGLNEA FTALTPLFSLFADGYYRLEERELYPTDGNGHFFWAVGNEKQPNPATTGQWIADVDYHY QSGEPCFLLPGQPPSRFNPQRAGYYRDKPESHALAWYMNDSWLCVLLDGHHKATAAAL EGRPVKTWVISQPVAMTCYETRQQCLRFYDGERLEEAQFQRRIPLKIQYEKLPPSLWE DYFTRHDERYTRVNWPNALANCATHYPDLAACADIIAAGDLSEAGLNKIMAQGITEEG FPAVLLRALFYTHSPLLIDFVRFLTRAPGYACHYPLAFRLLAQKRTPQADAFFLDFAI NDDGERPELTNIMDEYFRQA" regulatory complement(725530..725535) /regulatory_class="ribosome_binding_site" /locus_tag="STM0660" /note="putative RBS for STM0660; RegulonDB:STMS1H000981" gene complement(725561..726507) /gene="ybeK" /locus_tag="STM0661" /db_xref="GeneID:1252181" CDS complement(725561..726496) /gene="ybeK" /locus_tag="STM0661" /note="similar to E. coli putative tRNA synthetase (AAC73752.1); Blastp hit to AAC73752.1 (311 aa), 92% identity in aa 1 - 311" /codon_start=1 /transl_table=11 /product="putative purine nucleoside hydrolase" /protein_id="NP_459653.1" /db_xref="GeneID:1252181" /translation="MALPIIIDCDPGHDDAIALVLALASPELEVKAITSSAGNQTPEK TLRNVLRMLTLLKRLDIPVAGGAVKPLMRELIIADNVHGESGLDGPALPEPSFAPQSG TAVELMAKTLRESAQPVTIVSTGPQTNVALLLNSHPELHTKIARIVIMGGAMALGNWT PAAEFNIYVDPEAAEIVFQSGIPVVMAGLDVTHKAQIHAADIERFRAIGNPISTIVAE LLDFFMEYHKDEKWGFVGAPLHDPCTIAWLLKPEIFTTVERWVGVETQGKYTQGMTVV DYYFLTGNKPNATVMVDVDRQGFVDLLAERLQYYA" misc_feature complement(725564..726496) /gene="ybeK" /locus_tag="STM0661" /note="ribonucleoside hydrolase 1; Provisional; Region: rihA; PRK10443" /db_xref="CDD:182465" misc_feature complement(order(725774..725776,725999..726001, 726005..726007,726023..726025,726125..726127, 726254..726256,726380..726382,726452..726457, 726467..726469)) /gene="ybeK" /locus_tag="STM0661" /note="active site" /db_xref="CDD:239117" misc_feature complement(order(725687..725689,725696..725701, 725705..725707,725969..725971,726092..726094, 726284..726286)) /gene="ybeK" /locus_tag="STM0661" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:239117" regulatory complement(726502..726507) /regulatory_class="ribosome_binding_site" /gene="ybeK" /locus_tag="STM0661" /note="putative RBS for ybeK; RegulonDB:STMS1H000982" gene complement(726613..727350) /gene="gltL" /locus_tag="STM0662" /db_xref="GeneID:1252182" CDS complement(726613..727338) /gene="gltL" /locus_tag="STM0662" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding protein of glutamate/aspartate transport system (AAC73753.1); Blastp hit to AAC73753.1 (241 aa), 95% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="glutamate/aspartate transporter" /protein_id="NP_459654.1" /db_xref="GeneID:1252182" /translation="MITLKNVSKWYGHFQVLTDCSTEVKKGEVVVVCGPSGSGKSTLI KTVNGLEPVQKGEITVNGIIVNDKKTDLAKLRSRVGMVFQHFELFPHLSIIENLTLAQ VKVLKRDKAAARDKGLKLLERVGLSAHANKFPAQLSGGQQQRVAIARALCMDPIAMLF DEPTSALDPEMINEVLDVMVELANEGMTMMVVTHEMGFARKVANRVIFMDEGKIVEDS PKEEFFANPSSDRAKDFLAKILH" misc_feature complement(726622..727338) /gene="gltL" /locus_tag="STM0662" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:440743" gene complement(727338..728026) /gene="gltK" /locus_tag="STM0663" /db_xref="GeneID:1252183" CDS complement(727338..728012) /gene="gltK" /locus_tag="STM0663" /note="ABC superfamily (membrane); similar to E. coli glutamate/aspartate transport system permease (AAC73754.1); Blastp hit to AAC73754.1 (224 aa), 95% identity in aa 1 - 223" /codon_start=1 /transl_table=11 /product="glutamate/aspartate transporter" /protein_id="NP_459655.1" /db_xref="GeneID:1252183" /translation="MYEFDWSSIIPSLPYLLAGLVITLKITVTAVIVGIVWGTILAVM RLSSFAPIAWFAKAYVNVFRSIPLVMVLLWFYLIVPGFLQNVLGLSPKTDIRLISAMV AFSMFEAAYYSEIIRAGIQSISRGQSSAALALGMTHWQSMKLIILPQAFRAMVPLLLT QGIVLFQDTSLVYVLSLADFFRTASTIGERDGTQVEMILFAGAVYFVISLSASLLVSY LKKRTV" misc_feature complement(727341..728012) /gene="gltK" /locus_tag="STM0663" /note="glutamate/aspartate ABC transporter permease GltK; Region: PRK15107" /db_xref="CDD:185062" regulatory complement(727345..727350) /regulatory_class="ribosome_binding_site" /gene="gltK" /locus_tag="STM0663" /note="putative RBS for gltL; RegulonDB:STMS1H000983" gene complement(728012..728765) /gene="gltJ" /locus_tag="STM0664" /db_xref="GeneID:1252184" CDS complement(728012..728752) /gene="gltJ" /locus_tag="STM0664" /note="ABC superfamily (membrane); similar to E. coli glutamate/aspartate transport system permease (AAC73755.1); Blastp hit to AAC73755.1 (246 aa), 94% identity in aa 1 - 246" /codon_start=1 /transl_table=11 /product="glutamate/aspartate transporter" /protein_id="NP_459656.1" /db_xref="GeneID:1252184" /translation="MSIDWNWGIFLQEAPFGNTTYLGWLWSGFQVTVALSITAWIIAF LVGSIFGILRTVPNRFLSGLGTLYVELFRNVPLIVQFFTWYLVVPELLPEDLGMWFKA ELDPNIQFFLSSMICLGLFTAARVCEQVRAAIQSLPRGQKNAALAMGLTLPQAYRYVL LPNAYRVIVPPMTSEMMNLVKNSAIASTIGLVDMAAQAGKLLDYSAHAWESFTAITLA YVLINAVIMLVMSLVERKVRLPGNVGSK" misc_feature complement(728033..728743) /gene="gltJ" /locus_tag="STM0664" /note="ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; Region: HisM; COG0765" /db_xref="CDD:440528" regulatory complement(728021..728026) /regulatory_class="ribosome_binding_site" /gene="gltK" /locus_tag="STM0663" /note="putative RBS for gltK; RegulonDB:STMS1H000984" regulatory complement(728760..728765) /regulatory_class="ribosome_binding_site" /gene="gltJ" /locus_tag="STM0664" /note="putative RBS for gltJ; RegulonDB:STMS1H000985" gene complement(728912..729847) /gene="gltI" /locus_tag="STM0665" /db_xref="GeneID:1252185" CDS complement(728912..729838) /gene="gltI" /locus_tag="STM0665" /note="ABC superfamily (bind_prot); similar to E. coli putative periplasmic binding transport protein (AAC73756.1); Blastp hit to AAC73756.1 (302 aa), 93% identity in aa 1 - 302" /codon_start=1 /transl_table=11 /product="glutamate/aspartate transporter" /protein_id="NP_459657.1" /db_xref="GeneID:1252185" /translation="MIKELDMQLRKLTTAMLVMGLSAGLAHAEDGAPAAGSTLDKIAK NGVIVVGHRESSVPFSYYDNQQKVVGYSQDYSNAIVEAVKKKLNKPDLQVKLIPITSQ NRIPLLQNGTFDFECGSTTNNLERQKQAAFSDTIFVVGTRLLTKKGGDIKDFPDLKGK AVVVTSGTTSEILLHKLNEEQKMGMRIISAKDHGDSFRTLESGRAVAFMMDDALLAGE RAKAKKPDNWEIVGKPQSQEAYGCMLRKNDPEFKKLMDDTIAQAQTSGEAEKWFDKWF KNPIPPKNLNMNFELSDEMKALFKAPNDKALN" misc_feature complement(728915..729820) /gene="gltI" /locus_tag="STM0665" /note="glutamate and aspartate transporter subunit; Provisional; Region: PRK10797" /db_xref="CDD:236763" regulatory complement(729842..729847) /regulatory_class="ribosome_binding_site" /gene="gltI" /locus_tag="STM0665" /note="putative RBS for gltI; RegulonDB:STMS1H000986" gene complement(730175..731724) /gene="lnt" /locus_tag="STM0666" /db_xref="GeneID:1252186" CDS complement(730175..731713) /gene="lnt" /locus_tag="STM0666" /EC_number="2.3.1.-" /note="copper homeostasis protein; inner membrane; similar to E. coli apolipoprotein N-acyltransferase, copper homeostasis protein, inner membrane (AAC73758.1); Blastp hit to AAC73758.1 (512 aa), 89% identity in aa 1 - 512" /codon_start=1 /transl_table=11 /product="apolipoprotein N-acyltransferase" /protein_id="NP_459658.1" /db_xref="GeneID:1252186" /translation="MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIVSLIGL QALTFNRRPLQSAAIGYCWGLGLFGSGINWVYVSIAQFGGMPGPVNVFLVVLLAAYLS LYTGLFAGILSRLWPKTNWLRVAIAAPAIWQITEFLRGWVLTGFPWLQFGYSQVDGPL KGLAPVMGVEAINFLLMMVSGLLALALATRNWRPLAVAVILFALPFPLRYIQWFTLEP AKATQVSLVQGDIPQSLKWDENQLLNTLKIYLNETRPELGKSQIIIWPESAIPDLEIN QQPFLRSLDEMLREKNSTLITGIVDARLNKQNRYDTYNTIITLGKDNPYSYDSPNRYN KNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPQLHAHDYKLTAAICYEIIL GEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRSLELARPLLRSTNNGITA VIGPQGEIQAMIPQFTRQVLTTNVTPTTGLTPYARTGNWPLWVLTALFAFGAVVMSLR QRRK" misc_feature complement(730178..731689) /gene="lnt" /locus_tag="STM0666" /note="apolipoprotein N-acyltransferase; Reviewed; Region: lnt; PRK00302" /db_xref="CDD:234721" regulatory complement(731719..731724) /regulatory_class="ribosome_binding_site" /gene="lnt" /locus_tag="STM0666" /note="putative RBS for lnt; RegulonDB:STMS1H000987" gene complement(731733..732629) /gene="ybeX" /locus_tag="STM0667" /db_xref="GeneID:1252187" CDS complement(731733..732611) /gene="ybeX" /locus_tag="STM0667" /note="similar to E. coli putative transport protein (AAC73759.1); Blastp hit to AAC73759.1 (292 aa), 97% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="putative CBS domain-containing protein" /protein_id="NP_459659.1" /db_xref="GeneID:1252187" /translation="MSDDNSHSSDTVNSKKGFFSLLLSQLFHGEPKNRDELLALIRDS GQNELIDEDTRDMLEGVMDIADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSR FPVISEDKDHIEGILMAKDLLPFMRSDAEAFSMDKVLRTAVVVPESKRVDRMLKEFRS QRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYDEEDDIDFRQLSRHTWTIRALA SIEDFNDAFGTHFSDEEVDTIGGLVMQAFGHLPARGETIDIDGYQFKVAMADSRRIIQ VHVRIPDDSPQPKLDE" misc_feature complement(731736..732611) /gene="ybeX" /locus_tag="STM0667" /note="magnesium/cobalt transporter CorC; Region: PRK15094" /db_xref="CDD:185050" regulatory complement(732624..732629) /regulatory_class="ribosome_binding_site" /gene="ybeX" /locus_tag="STM0667" /note="putative RBS for ybeX; RegulonDB:STMS1H000988" gene complement(732769..733259) /gene="ybeY" /locus_tag="STM0668" /db_xref="GeneID:1252188" CDS complement(732769..733242) /gene="ybeY" /locus_tag="STM0668" /note="hypothetical protein in cutE-corC intergenic region. (SW:YBEY_SALTY)" /codon_start=1 /transl_table=11 /product="putative metal-dependent hydrolase" /protein_id="NP_459660.1" /db_xref="GeneID:1252188" /translation="MSQVILDLQLACENHAGLPDEAQFQRWLDGVIPQFQEEAEVTIR LVDEAESHDLNLTYRGKDKPTNVLSFPFEAPAGIEMPLLGDLIICRQVVEQEAQEQSK PLEAHWAHMVVHGSLHLLGYDHIDDDEAEEMESLETEIMLAMGYEDPYIAEKIAE" misc_feature complement(732799..733185) /gene="ybeY" /locus_tag="STM0668" /note="ssRNA-specific RNase YbeY, 16S rRNA maturation enzyme [Translation, ribosomal structure and biogenesis]; Region: YbeY; COG0319" /db_xref="CDD:440088" gene complement(733239..734331) /gene="phoL" /locus_tag="STM0669" /db_xref="GeneID:1252189" CDS complement(733239..734324) /gene="phoL" /locus_tag="STM0669" /note="similar to E. coli putative ATP-binding protein in pho regulon (AAC73761.1); Blastp hit to AAC73761.1 (359 aa), 96% identity in aa 1 - 359" /codon_start=1 /transl_table=11 /product="putative phosphate starvation-inducible protein, ATP-binding" /protein_id="NP_459661.3" /db_xref="GeneID:1252189" /translation="MFSVRRYRHKRNSLNIDTREITLEPADNARLLSLCGPFDDNIKQ LERRLGIEINRRDNHFKLTGRPICVTAATDILRSLYVDTAPMRGQTQDIEPEQIHLAI KEARVLEQSAESVPDYGKAINIKTKRGVIKPRTPNQAQYIANILDHDITFGVGPAGTG KTYLAVAAAVDALERQEIRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFE MLGFEKVEKLIERNVIEVAPLAYMRGRTLNDAFIILDESQNTTIEQMKMFLTRIGFNS KAVITGDVTQIDLPRNTKSGLRHAIEVLAEVDEISFNFFHSEDVVRHPVVARIVNAYE AWEEAEQKRKAALAAERKREAQEQEQK" misc_feature complement(733290..734276) /gene="phoL" /locus_tag="STM0669" /note="Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]; Region: PhoH; COG1702" /db_xref="CDD:441308" regulatory complement(733254..733259) /regulatory_class="ribosome_binding_site" /gene="ybeY" /locus_tag="STM0668" /note="putative RBS for ybeY; RegulonDB:STMS1H000989" regulatory complement(734326..734331) /regulatory_class="ribosome_binding_site" /gene="phoL" /locus_tag="STM0669" /note="putative RBS for phoL; RegulonDB:STMS1H000990" gene complement(734490..735914) /gene="miaB" /locus_tag="STM0670" /db_xref="GeneID:1252190" CDS complement(734490..735914) /gene="miaB" /locus_tag="STM0670" /note="similar to E. coli orf, hypothetical protein (AAC73762.1); Blastp hit to AAC73762.1 (474 aa), 98% identity in aa 1 - 474" /codon_start=1 /transl_table=11 /product="methylthiolation of isopentenylated A37 derivatives in rRNA" /protein_id="NP_459662.1" /db_xref="GeneID:1252190" /translation="MTKKLHIKTWGCQMNEYDSSKMADLLDATHGYQLTDVAEEADVL LLNTCSIREKAQEKVFHQLGRWRLLKEKNPDLIIGVGGCVASQEGEHIRQRAHYVDII FGPQTLHRLPEMINSVRGDRSPVVDISFPEIEKFDRLPEPRAEGPTAFVSIMEGCNKY CTYCVVPYTRGEEVSRPSDDILFEIAQLAAQGVREVNLLGQNVNAWRGENYDGTTGTF ADLLRLVAAIDGIDRIRFTTSHPIEFTDDIIEVYRDTPELVSFLHLPVQSGSDRVLNL MGRTHTALEYKAIIRKLRAARPDIQISSDFIVGFPGETTDDFEKTMKLIADVNFDMSY SFIFSARPGTPAADMVDDVPEEEKKQRLYILQERINQQAMAWSRRMLGTTQRILVEGT SRKNIMELSGRTENNRVVNFEGTPEMIGKFVDVEITDVYPNSLRGKVVRTEDEMGLRV AETPESVIARTRKENELGVGFYQP" misc_feature complement(734595..735905) /gene="miaB" /locus_tag="STM0670" /note="tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB; Region: miaB-methiolase; TIGR01574" /db_xref="CDD:273700" gene 736044..737233 /gene="ubiF" /locus_tag="STM0671" /db_xref="GeneID:1252191" regulatory 736044..736049 /regulatory_class="ribosome_binding_site" /gene="ubiF" /locus_tag="STM0671" /note="putative RBS for ubiF; RegulonDB:STMS1H000991" CDS 736058..737233 /gene="ubiF" /locus_tag="STM0671" /EC_number="1.14.13.-" /note="similar to E. coli orf, hypothetical protein (AAC73763.1); Blastp hit to AAC73763.1 (391 aa), 85% identity in aa 1 - 391" /codon_start=1 /transl_table=11 /product="putative monooxygenase" /protein_id="NP_459663.1" /db_xref="GeneID:1252191" /translation="MTNQPTEIAIVGGGMVGGALALGLAQQGFTVMVIEHAAPAPFVA DSQPDVRISAISAASVALLKGLGVWEAVQGMRSHPYRRLETWEWENAHVVFDAAELKL PLLGYMVENNVLQQALWQALEAHPGVTLRVPASLAALQRRHDGYALELADGECITPKL VIGADGANSQVRQMAGIGIHAWQYAQSCMLITVKCENAPGDSTWQQFTPTGPRAFLPL FDDWASLVWYDAPARIRQLQGLSMTQLQVEINQHFPARLGAVMPVAAGAFPLTRRHAL QYAQPGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLASARSYGESWASHSVLKRY QTRRMADNFMMQSGMDLFYAGFSNELPPLRILRNMGLMAAQRAGVLKRQALKYALGL" misc_feature 736058..737230 /gene="ubiF" /locus_tag="STM0671" /note="2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed; Region: ubiF; PRK08020" /db_xref="CDD:181199" gene complement(737300..737878) /locus_tag="STM0672" /db_xref="GeneID:1252192" CDS complement(737300..737875) /locus_tag="STM0672" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459664.1" /db_xref="GeneID:1252192" /translation="MNYQFCWYLFLRPLTFFMVVLLCAFTFIDITASAAWLIILGLVY PVAVSMRLHILHQKKAVMLRQNSAEWIVYLPGIPVQEKQSALINVAFSSKTALRGFYI RALSSKVILHIITFYILWFDVQHATLTWYRIIAALITLAILVKSMSSTLLMLHKVVRC QYNVCTIEMASPWYEIDFKGKLGLCALFAVK" regulatory complement(737873..737878) /regulatory_class="ribosome_binding_site" /locus_tag="STM0672" /note="putative RBS for STM0672; RegulonDB:STMS1H000992" gene complement(738014..738085) /gene="glnX" /locus_tag="STM0673" /db_xref="GeneID:1252193" tRNA complement(738014..738085) /gene="glnX" /locus_tag="STM0673" /product="tRNA-Gln" /db_xref="GeneID:1252193" gene complement(738132..738203) /gene="glnV" /locus_tag="STM0674" /db_xref="GeneID:1252194" tRNA complement(738132..738203) /gene="glnV" /locus_tag="STM0674" /product="tRNA-Gln" /db_xref="GeneID:1252194" gene complement(738253..738326) /gene="metU" /locus_tag="STM0675" /db_xref="GeneID:1252195" tRNA complement(738253..738326) /gene="metU" /locus_tag="STM0675" /product="tRNA-OTHER" /db_xref="GeneID:1252195" gene complement(738345..738416) /gene="glnW" /locus_tag="STM0676" /db_xref="GeneID:1252196" tRNA complement(738345..738416) /gene="glnW" /locus_tag="STM0676" /product="tRNA-Gln" /db_xref="GeneID:1252196" gene complement(738455..738526) /gene="glnU" /locus_tag="STM0677" /db_xref="GeneID:1252197" tRNA complement(738455..738526) /gene="glnU" /locus_tag="STM0677" /product="tRNA-Gln" /db_xref="GeneID:1252197" gene complement(738553..738634) /gene="leuW" /locus_tag="STM0678" /db_xref="GeneID:1252198" tRNA complement(738553..738634) /gene="leuW" /locus_tag="STM0678" /product="tRNA-Leu" /db_xref="GeneID:1252198" gene complement(738646..738719) /gene="metT" /locus_tag="STM0679" /db_xref="GeneID:1252199" tRNA complement(738646..738719) /gene="metT" /locus_tag="STM0679" /product="tRNA-Met" /db_xref="GeneID:1252199" gene complement(738942..740618) /gene="asnB" /locus_tag="STM0680" /db_xref="GeneID:1252200" CDS complement(738942..740606) /gene="asnB" /locus_tag="STM0680" /EC_number="6.3.5.4" /note="similar to E. coli asparagine synthetase B (AAC73768.1); Blastp hit to AAC73768.1 (554 aa), 94% identity in aa 1 - 554" /codon_start=1 /transl_table=11 /product="asparagine synthetase B" /protein_id="NP_459665.1" /db_xref="GeneID:1252200" /translation="MCSIFGVFDIKTDAAELRKKALELSRLMRHRGPDWSGIYACDNA ILAHERLSIVDVNAGAQPLYNARKTHVLAVNGEIYNHQTLRAEYGDRYAFQTGSDCEV ILALYQEKGPDFLDDLQGMFAFALYDSEKDAYLIGRDHIGIIPLYMGYDEFGNFYVAS EMKALTPVCRTIKEFPAGSYLWSKDGEIRQYYQRDWFEFDAVKDNVTDKNALRQALEE SVKSHLMSDVPYGVLLSGGLDSSVISAITKKFAARRVEDQERSEAWWPQLHSFAVGLE GSPDLKAAQEVANHLGTVHHEIHFTVQEGLDAIRDVIYHIETYDVTTIRASTPMYLMS RKIKAMGIKMVLSGEGSDEVFGGYLYFHKAPNAKELHEETVRKLQALHMYDCARANKA MSAWGVEARVPFLDKKFLDVAMRINPQDKMCGNGKMEKHVLRECFESYLPASVAWRQK EQFSDGVGYSWIDTLKEVAAKQISDQQLETARFRFPYNTPSSKEAYLYREIFEELFPV PSAAECVPGGPSVACSSAKAIEWDEAFKTMDDPSGRAVGVHQSAYQ" misc_feature complement(738948..740606) /gene="asnB" /locus_tag="STM0680" /note="asparagine synthetase B; Provisional; Region: asnB; PRK09431" /db_xref="CDD:236513" regulatory complement(740613..740618) /regulatory_class="ribosome_binding_site" /gene="asnB" /locus_tag="STM0680" /note="putative RBS for asnB; RegulonDB:STMS1H000997" gene complement(740896..741659) /gene="nagD" /locus_tag="STM0681" /db_xref="GeneID:1252201" CDS complement(740896..741648) /gene="nagD" /locus_tag="STM0681" /note="similar to E. coli N-acetylglucosamine metabolism (AAC73769.1); Blastp hit to AAC73769.1 (250 aa), 96% identity in aa 1 - 250" /codon_start=1 /transl_table=11 /product="putative phosphatase in N-acetylglucosamine metabolism" /protein_id="NP_459666.1" /db_xref="GeneID:1252201" /translation="MTIKNVICDIDGVLMHDNVAVPGAAEFLTGILEKGLPLVLLTNY PSQTGQDLANRFATAGVNVPDSVFYTSAMATADFLRRQEGKKAYVVGEGALIHELYKA GFTITDVNPDFVIVGETRSYNWDMMHKAAFFVANGARFIATNPDTHGRGFYPACGALC AGIEKISGRKPFYVGKPSPWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETI LVLSGVSTINDIDSMPFRPSWIYPSVAEIDVI" misc_feature complement(740899..741642) /gene="nagD" /locus_tag="STM0681" /note="HAD-IIA family hydrolase; Region: PRK10444" /db_xref="CDD:182466" regulatory complement(741654..741659) /regulatory_class="ribosome_binding_site" /gene="nagD" /locus_tag="STM0681" /note="putative RBS for nagD; RegulonDB:STMS1H000998" gene complement(741695..742921) /gene="nagC" /locus_tag="STM0682" /db_xref="GeneID:1252202" CDS complement(741695..742915) /gene="nagC" /locus_tag="STM0682" /note="similar to E. coli transcriptional repressor of nag (N-acetylglucosamine) operon (AAC73770.1); Blastp hit to AAC73770.1 (406 aa), 94% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="transcriptional repressor of nag (N-acetylglucosamine) operon (NagC/XylR family)" /protein_id="NP_459667.1" /db_xref="GeneID:1252202" /translation="MTPGGQAQIGNVDLVKQLNSAAVYRLIDQHGPISRIQIAEQSQL APASVTKITRQLIERGLIKEVDQQASTGGRRAISIVTETRNFHAIGVRLGRHDTTLTL YDLSSKVVAEEHYPLPERTQETLEHALLNTIAVFIDSCQRKIRELIAISVILPGLVDP ESGVIRYMPHIQVENWGLVEALEKRFHVTCFVGHDIRSLALAEHYFGASQDCEDSILV RVHRGTGAGIISNGRIFIGRNGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQ RVLNLLKQGYQSRVPLDDCTIKTICKAANRGDSLASEVIEHVGRHLGKTIAIAINLFN PQKIVIAGEIIEADKVLLPAIESCINTQALKAFRKNLPVVRSTLDHRSAIGAFALVKR AMLNGTLLQCLLES" misc_feature complement(742685..742843) /gene="nagC" /locus_tag="STM0682" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cl46857" /db_xref="CDD:481197" misc_feature complement(741716..742660) /gene="nagC" /locus_tag="STM0682" /note="ATPase-like domain of N-acetylglucosamine repressor (NagC) and similar proteins; Region: ASKHA_ATPase_ROK_NagC; cd24075" /db_xref="CDD:466925" regulatory complement(742916..742921) /regulatory_class="ribosome_binding_site" /gene="nagC" /locus_tag="STM0682" /note="putative RBS for nagC; RegulonDB:STMS1H000999" gene complement(742920..744086) /gene="nagA" /locus_tag="STM0683" /db_xref="GeneID:1252203" CDS complement(742920..744074) /gene="nagA" /locus_tag="STM0683" /EC_number="3.5.1.25" /note="similar to E. coli N-acetylglucosamine-6-phosphate deacetylase (AAC73771.1); Blastp hit to AAC73771.1 (382 aa), 92% identity in aa 1 - 380" /codon_start=1 /transl_table=11 /product="N-acetylglucosamine-6-phosphate deacetylase" /protein_id="NP_459668.1" /db_xref="GeneID:1252203" /translation="MYALTQGRIFTGHEILDDHALVVANGLIDRVCPMAELPPGIEQR SLNGAILSPGFIDVQLNGCGGVQFNDTAEAVSVETLEIMQKANEKSGCTNFLPTLITT SDELMKQGIRVMREYLEKHPHQALGLHLEGPWLNLVKKGTHNPDFVRKPDAALVDFLC DNADVITKVTLAPEMVPADVIAKLANAGIVVSAGHSNATLKEAKAGFRAGITFATHLF NAMPYITGREPGLAGAVLDEADIYCGVIADGLHVDYANIRNAKRLKGDKLCLVTDATA PAGANIEQFIFAGKTIYYRNGLCVDENGTLSGSSLTMIEGVRNLVAHCGIALDEVLRM ATLYPARAIGVDKHLGSIAPGKVANLTAFTHDFKIIKTIVNGDEVVDLSK" misc_feature complement(742932..744074) /gene="nagA" /locus_tag="STM0683" /note="N-acetylglucosamine-6-phosphate deacetylase; Provisional; Region: nagA; PRK11170" /db_xref="CDD:183010" misc_feature complement(order(743157..743159,743256..743258, 743322..743324,743415..743420,743427..743429, 743490..743492,743649..743651,743682..743684, 743892..743894,743898..743900)) /gene="nagA" /locus_tag="STM0683" /note="active site" /db_xref="CDD:238434" misc_feature complement(order(743289..743291,743298..743303, 743307..743312,743316..743327,743364..743369, 743388..743390,743394..743399,743403..743405, 743421..743423)) /gene="nagA" /locus_tag="STM0683" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238434" regulatory complement(744081..744086) /regulatory_class="ribosome_binding_site" /gene="nagA" /locus_tag="STM0683" /note="putative RBS for nagA; RegulonDB:STMS1H001000" gene complement(744134..745013) /gene="nagB" /locus_tag="STM0684" /db_xref="GeneID:1252204" CDS complement(744134..744934) /gene="nagB" /locus_tag="STM0684" /EC_number="3.5.99.6" /note="similar to E. coli glucosamine-6-phosphate deaminase (AAC73772.1); Blastp hit to AAC73772.1 (266 aa), 95% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="glucosamine-6-phosphate deaminase" /protein_id="NP_459669.1" /db_xref="GeneID:1252204" /translation="MRLIPLSTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGT PLTAYKALVEMHKAGEVSFKHVVTFNMDEYVGLPKEHPESYHSFMHRNFFDHVDIPAE NINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIK TLTHDTRVANSRFFDGDVNQVPKYALTVGVGTLLDAEEVMILVLGHQKAQALQAAVEG NVNHMWTISCLQLHPKAVVVCDEPSTMELKVKTLKYFNELEAENIKGL" misc_feature complement(744158..744934) /gene="nagB" /locus_tag="STM0684" /note="glucosamine-6-phosphate isomerase; Region: nagB; TIGR00502" /db_xref="CDD:129593" misc_feature complement(order(744311..744313,744419..744421, 744500..744502,744506..744508,744521..744526, 744719..744724,744803..744814)) /gene="nagB" /locus_tag="STM0684" /note="active site" /db_xref="CDD:238693" misc_feature complement(order(744239..744247,744269..744289, 744452..744454,744476..744481,744485..744487)) /gene="nagB" /locus_tag="STM0684" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238693" misc_feature complement(order(744452..744463,744479..744484)) /gene="nagB" /locus_tag="STM0684" /note="allosteric site [active]" /db_xref="CDD:238693" misc_feature complement(order(744389..744397,744407..744439, 744446..744448)) /gene="nagB" /locus_tag="STM0684" /note="active site lid [active]" /db_xref="CDD:238693" misc_feature complement(order(744194..744205,744212..744214, 744305..744307,744317..744319,744431..744433)) /gene="nagB" /locus_tag="STM0684" /note="hexamer (dimer of trimers) interface [polypeptide binding]; other site" /db_xref="CDD:238693" protein_bind complement(744939..744951) /gene="nagB" /locus_tag="STM0684" /note="putative binding site for NagC, RegulonDB: STMS1H000301" /bound_moiety="NagC" regulatory complement(744939..744944) /regulatory_class="ribosome_binding_site" /gene="nagB" /locus_tag="STM0684" /note="putative RBS for nagB; RegulonDB:STMS1H001001" protein_bind complement(744977..744997) /gene="nagB" /locus_tag="STM0684" /note="putative binding site for CRP, RegulonDB: STMS1H000075" /bound_moiety="CRP" regulatory complement(744986..744994) /regulatory_class="minus_10_signal" /gene="nagB" /locus_tag="STM0684" /note="putative -10_signal for nagB; RegulonDB:STMLTH004692" regulatory complement(745005..745013) /regulatory_class="minus_35_signal" /gene="nagB" /locus_tag="STM0684" /note="putative -35_signal for nagB; RegulonDB:STMLTH004692" protein_bind complement(745021..745041) /note="putative binding site for CRP, RegulonDB: STMS1H000049" /bound_moiety="CRP" protein_bind 745087..745107 /note="putative binding site for CRP, RegulonDB: STMS1H000112" /bound_moiety="CRP" protein_bind 745119..745147 /note="putative binding site for NagC, RegulonDB: STMS1H000304" /bound_moiety="NagC" protein_bind 745121..745141 /note="putative binding site for CRP, RegulonDB: STMS1H000101" /bound_moiety="CRP" protein_bind 745131..745151 /note="putative binding site for CRP, RegulonDB: STMS1H000059" /bound_moiety="CRP" gene 745168..747213 /gene="nagE" /locus_tag="STM0685" /db_xref="GeneID:1252205" regulatory 745168..745176 /regulatory_class="minus_35_signal" /gene="nagE" /locus_tag="STM0685" /note="putative -35_signal for nagE; RegulonDB:STMLTH004693" regulatory 745192..745200 /regulatory_class="minus_10_signal" /gene="nagE" /locus_tag="STM0685" /note="putative -10_signal for nagE; RegulonDB:STMLTH004693" regulatory 745248..745253 /regulatory_class="ribosome_binding_site" /gene="nagE" /locus_tag="STM0685" /note="putative RBS for nagE; RegulonDB:STMS1H001002" CDS 745261..747213 /gene="nagE" /locus_tag="STM0685" /note="similar to E. coli PTS system, N-acetylglucosamine-specific enzyme IIABC (AAC73773.1); Blastp hit to AAC73773.1 (648 aa), 92% identity in aa 1 - 647" /codon_start=1 /transl_table=11 /product="Sugar Specific PTS family, n-acetylglucosamine-specific enzyme IIABC" /protein_id="NP_459670.1" /db_xref="GeneID:1252205" /translation="MNILGFFQRLGRALQLPIAVLPVAALLLRFGQPDLLNMPFIAQA GGSIFDNLALVFAIGVASSWSKDSAGAAALAGAVGYFVMTKAMVTINPEINMGVLAGI ITGLVGGAVYNRWSGIKLPDFLSFFGGKRFVPIATGFFCLVLAAIFGYVWPPVQHGIH AGGEWIVSAGALGSGIFGFINRLLIPTGLHQVLNTIAWFQIGEFTNAAGTVFHGDINR FYAGDGTAGMFMSGFFPIMMFGLPGAALAMYFAAPKERRPMVGGMLLSVAITAFLTGV TEPLEFLFMFLAPLLYLLHAILTGISLFVATLLGIHAGFSFSAGAIDYVLMYNLPAAS NNVWMLLVMGVVFFIIYFLLFSAVIRMFNLKTPGREDKVDEMVTEEANSNTEEGLTQL ATSYIAAVGGTDNLKAIDACITRLRLTVNDSARVNDAACKRLGASGVVKLNKQTIQVI VGAKAESIGDEMKKVVARGPVAAASADAAHVATPAPAAKPQAVPNAVTIAELVSPITG EVVALDQVPDEAFASKAVGDGVAVKPTDKTVVSPAAGTIVKIFNTNHAFCLETEKGAE IVVHMGIDTVALNGQGFKRLVEEGAEVTAGQPVLELDLDFLNANARSMISPVVCSNSD DFSALVIKADGHVVAGKTPLYEIKSK" misc_feature 745261..747207 /gene="nagE" /locus_tag="STM0685" /note="PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional; Region: PRK10255" /db_xref="CDD:182338" gene 747412..749091 /gene="glnS" /locus_tag="STM0686" /db_xref="GeneID:1252206" regulatory 747412..747417 /regulatory_class="ribosome_binding_site" /gene="glnS" /locus_tag="STM0686" /note="putative RBS for glnS; RegulonDB:STMS1H001003" CDS 747424..749091 /gene="glnS" /locus_tag="STM0686" /EC_number="6.1.1.18" /note="similar to E. coli glutamine tRNA synthetase (AAC73774.1); Blastp hit to AAC73774.1 (554 aa), 96% identity in aa 1 - 554" /codon_start=1 /transl_table=11 /product="glutamine tRNA synthetase" /protein_id="NP_459671.1" /db_xref="GeneID:1252206" /translation="MSEAEARPTNFIRQIIDEDLASGKHTTVHTRFPPEPNGYLHIGH AKSICLNFGIAQDYQGQCNLRFDDTNPVKEDIEYVDSIKNDVEWLGFHWSGDIRYSSD YFDQLHAYAVELINKGLAYVDELTPEQIREYRGTLTAPGKNSPFRDRSVEENLALFEK MRTGGFEEGKACLRAKIDMASPFIVMRDPVLYRIKFAEHHQTGNKWCIYPMYDFTHCI SDALEGITHSLCTLEFQDNRRLYDWVLDNITIPVHPRQYEFSRLNLEYTVMSKRKLNL LVTDKHVEGWDDPRMPTISGLRRRGYTAASIREFCKRIGVTKQDNTIEMASLESCIRE DLNENAPRAMAVIDPVKLVIENYPQGESEMVTMPNHPNKPEMGSREVPFSGEIWIDRA DFREEANKQYKRLVMGKEVRLRNAYVIKAERVEKDAEGNITTIFCTYDADTLSKDPAD GRKVKGVIHWVSAAHALPIEIRLYDRLFSVPNPGAAEDFLSVINPESLVIKQGYGEPS LKAAVAGKAFQFEREGYFCLDSRYATADKLVFNRTVGLRDTWAKAGE" misc_feature 747424..749082 /gene="glnS" /locus_tag="STM0686" /note="glutaminyl-tRNA synthetase; Provisional; Region: PRK05347" /db_xref="CDD:235424" gene 749525..750943 /gene="ybfM" /locus_tag="STM0687" /db_xref="GeneID:1252207" regulatory 749525..749530 /regulatory_class="ribosome_binding_site" /gene="ybfM" /locus_tag="STM0687" /note="putative RBS for ybfM; RegulonDB:STMS1H001004" CDS 749537..750943 /gene="ybfM" /locus_tag="STM0687" /note="similar to E. coli orf, hypothetical protein (AAC73775.1); Blastp hit to AAC73775.1 (468 aa), 91% identity in aa 1 - 468" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_459672.1" /db_xref="GeneID:1252207" /translation="MRTFSGKRSTLALAIAGITAMSGWIVVPQAQASGFFDDSTLTGG IYYWQRERDRKDVTDGDKYKTNLSHATWNANLDFQSGYAADMFGLDIAAFTAIEMAEN GDSGHPNEIAFSKKNKGYDEDYSGDKSGISLYKAAAKFKYGPVWARAGYIQPTGQTLL APHWSFMPGTYQGAEAGASFDYGDAGALSFSYMWTNEYKAPWHTEMDKFYQADKKTNV DYLHSIGAKYDFKNDLVLEAAFGQSEGYVDQYFAKASYKFDLGGNPFTTSYQFYGARD KVDDRSVNDIYDGTAWLQALTFGYKVAEVVDLRLEGTWVKADGQQGYFLQRMTPTYAS SNGRLDIWWDNRSDFNANGEKAVFFGAMYDLKNWNLPGWAVGASYVYAWDAKPATWQS NPDAYYDKNRTIEESSYSLDAVYTLQEGRAKGTMFKLHFTEYDNHSNIPSWGGGYGNI FQDERDVKFIVIAPFTIF" misc_feature 749633..750823 /gene="ybfM" /locus_tag="STM0687" /note="outer membrane porin, OprD family; Region: OprD; pfam03573" /db_xref="CDD:460978" gene 750981..751325 /gene="ybfN" /locus_tag="STM0688" /db_xref="GeneID:1252208" regulatory 750981..750986 /regulatory_class="ribosome_binding_site" /gene="ybfN" /locus_tag="STM0688" /note="putative RBS for ybfN; RegulonDB:STMS1H001005" CDS 750993..751325 /gene="ybfN" /locus_tag="STM0688" /note="similar to E. coli orf, hypothetical protein (AAC73776.1); Blastp hit to AAC73776.1 (108 aa), 84% identity in aa 1 - 107" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_459673.1" /db_xref="GeneID:1252208" /translation="MKKILLIASMTAGLTACASSPAPEEDSRLKEAYSACINTAQGSP EKIEACQSVLNVLKKERRHQQFANEESVRVLDYQQCIQATRTGNDQAVKADCDKVWQE IRSHNNVQ" misc_feature 751050..751313 /gene="ybfN" /locus_tag="STM0688" /note="YbfN-like lipoprotein; Region: YbfN; pfam13982" /db_xref="CDD:433624" gene complement(751374..752685) /gene="citA" /locus_tag="STM0689" /db_xref="GeneID:1252209" CDS complement(751374..752678) /gene="citA" /locus_tag="STM0689" /note="citrate-proton symporter (citrate transporter). (SW:CIT1_SALTY)" /codon_start=1 /transl_table=11 /product="citrate-proton symporter" /protein_id="NP_459674.1" /db_xref="GeneID:1252209" /translation="MAQHTPATSRAGTFGAILRVTSGNFLEQFDFFLFGFYATYIART FFPAESEFASLMLTFAVFGSGFLMRPVGAIVLGAYIDRIGRRKGLMVTLAIMGCGTLL IALVPGYQTIGLAAPALVLLGRLLQGFSAGVELGGVSVYLSEIATPGNKGFYTSWQSA SQQVAIVVAALIGYSLNITLGHDAISEWGWRIPFFIGCMIIPLIFVLRRSLQETEAFL QRKHRPDTREIFATIAKNWRIITAGTLLVAMTTTTFYFITVYTPTYGRTVLNLSARDS LIVTMLVGVSNFIWLPIGGAISDRIGRRAVLMGITLLALITTWPVMQWLTAAPDFTRM TLVLLWFSFFFGMYNGAMVAALTEVMPVYVRTVGFSLAFSLATAIFGGLTPAISTALV KLTGDKSSPGWWLMCAALCGLAATAMLFVRLSRGYIAAENKA" misc_feature complement(751377..752678) /gene="citA" /locus_tag="STM0689" /note="tricarballylate/proton symporter TcuC; Region: PRK15075" /db_xref="CDD:237902" regulatory complement(752680..752685) /regulatory_class="ribosome_binding_site" /gene="citA" /locus_tag="STM0689" /note="putative RBS for citA; RegulonDB:STMS1H001006" gene complement(752729..753875) /gene="citB" /locus_tag="STM0690" /db_xref="GeneID:1252210" CDS complement(752729..753868) /gene="citB" /locus_tag="STM0690" /note="citrate utilization protein B. (SW:CIT2_SALTY)" /codon_start=1 /transl_table=11 /product="citrate utilization protein b" /protein_id="NP_459675.1" /db_xref="GeneID:1252210" /translation="MKQLEKLIIEATVLTEPEAEVERVMQVCNACRYCEGFCAVFPAM TQRLEFGKADIHYLANLCHNCGACLHACQYAPPHEFAINVPKAMAQARLETYQQYAQP AAFGALYRRAGITVALALIVGLTLFLLLAMALKGSLIHPPLAGDFYQIFPHSLLAWMF GSVFVLAIGLLMAGVIRFWREISPGVPRSAEIAEASHNALTLKYLDGGHGKGCNEADD AFTLLRRRFHHFTFYGFMLCFAATVVATGYHYVAGWEAPYPFFSLPVMLGTLGGIGLL IGPAGLLWLNLRRSPLHGDARQKPMDRGFILLLFLTSLTGLALLAGRDTSGMGILLAL HLGVVMALFLTLPYGKFAHGFFRCAALLKWAVEKRRGKHAGDTGN" misc_feature complement(752732..753868) /gene="citB" /locus_tag="STM0690" /note="tricarballylate utilization 4Fe-4S protein TcuB; Region: PRK15033" /db_xref="CDD:237885" gene complement(753855..755263) /locus_tag="STM0691" /db_xref="GeneID:1252211" CDS complement(753855..755258) /locus_tag="STM0691" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459676.1" /db_xref="GeneID:1252211" /translation="MVDVLVIGGGNAALCAALTAREAGASVLLLEAAPREWRGGNSQH TRNLRCMHDAPQDVLVESYPEEEFWQDLWRVTDGNTNEALARLVIRTSSQCRDWMRKH GVNFQPPLSGALHVARTNAFFMGGGKALVNAYYRSAERLGVQVRYNTPVHALELHDGE FVAALAGSERITAKACVLAAGGFESNREWLREAWGENARGEWPADNFLIRGTRFNQGV LLKFMMDAGADIIGDPSQSHCVAIDARAPLYDGGICTRVDCVSLGIVVNRDAERFYDE GEDFWPKRYAIWGRLVAQQPGQIGYSIIDSKAIGHFMPPVFPGAQANTLAELACQLGL DAEKFTHTVTQYNQACQPGHFDHTLLDDCATKNLTPAKTHWARPLDAPPYYGYALRPG ITFTYLGLKVNERAAVHFAGHPSRNLFVAGEMMAGNVLGKGYTAGVGMSIGTTFGRIA GIEAARAAHKEAQHETA" misc_feature complement(753873..755258) /locus_tag="STM0691" /note="FAD-dependent tricarballylate dehydrogenase TcuA; Region: PRK08274" /db_xref="CDD:236214" regulatory complement(753870..753875) /regulatory_class="ribosome_binding_site" /gene="citB" /locus_tag="STM0690" /note="putative RBS for citB; RegulonDB:STMS1H001007" regulatory complement(755258..755263) /regulatory_class="ribosome_binding_site" /locus_tag="STM0691" /note="putative RBS for STM0691; RegulonDB:STMS1H001008" gene complement(755356..756295) /locus_tag="STM0692" /db_xref="GeneID:1252212" CDS complement(755356..756282) /locus_tag="STM0692" /note="similar to E. coli nitrogen assimilation control protein (AAC75050.1); Blastp hit to AAC75050.1 (305 aa), 32% identity in aa 1 - 301" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459677.1" /db_xref="GeneID:1252212" /translation="MELRQLRYFVRIIETGSMGSAAQDLDIGVSALSQQMSRLENELA IRLLQRTSRGVTPTNAGLAFYSQAQLALRHADDAILAAREARLSGHVSVGMAPSTASI LGIPFIHAMQENYADVRLHVVESLSGNLERMINTRQIDLAIVFQKDKILRWSARPILE EQLFLIGSHALLAALPDNPITPEQLAGIPLIMPSQGHGLRGRLDAVCQEHALNVEIVA EIDGLALLMRAVRDGLGATLQPGAAISHLDNDALRVIGVHNPVLSRPNFLVSLSDDEL TPAGLAARVVLTKVMRQLVDAGEWPGATLYAY" misc_feature complement(756100..756276) /locus_tag="STM0692" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature complement(755422..756015) /locus_tag="STM0692" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" misc_feature complement(order(755587..755592,755596..755601, 755617..755634,755911..755931,755935..755937, 755947..755949,755956..755961,755965..755970)) /locus_tag="STM0692" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" regulatory complement(756290..756295) /regulatory_class="ribosome_binding_site" /locus_tag="STM0692" /note="putative RBS for STM0692; RegulonDB:STMS1H001009" gene complement(756397..757003) /gene="fur" /locus_tag="STM0693" /db_xref="GeneID:1252213" CDS complement(756397..756849) /gene="fur" /locus_tag="STM0693" /note="similar to E. coli negative regulator (AAC73777.1); Blastp hit to AAC73777.1 (148 aa), 99% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="transcriptional repressor of iron-responsive genes (Fur family) (ferric uptake regulator)" /protein_id="NP_459678.1" /db_xref="GeneID:1252213" /translation="MTDNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLI DMGEEIGLATVYRVLNQFDDAGIVTRHNFEGGKSVFELTQQHHHDHLICLDCGKVIEF SDDSIEARQREIAAKHGIRLTNHSLYLYGHCAEGDCREDEHAHDDATK" misc_feature complement(756412..756849) /gene="fur" /locus_tag="STM0693" /note="ferric uptake regulator; Provisional; Region: fur; PRK09462" /db_xref="CDD:236527" regulatory complement(756859..756864) /regulatory_class="ribosome_binding_site" /gene="fur" /locus_tag="STM0693" /note="putative RBS for fur; RegulonDB:STMS1H001010" regulatory complement(756979..756987) /regulatory_class="minus_10_signal" /gene="fur" /locus_tag="STM0693" /note="putative -10_signal for fur; RegulonDB:STMLTH004694" protein_bind complement(756981..757001) /gene="fur" /locus_tag="STM0693" /note="putative binding site for CRP, RegulonDB: STMS1H000047" /bound_moiety="CRP" regulatory complement(756995..757003) /regulatory_class="minus_35_signal" /gene="fur" /locus_tag="STM0693" /note="putative -35_signal for fur; RegulonDB:STMLTH004694" gene complement(757131..757676) /gene="fldA" /locus_tag="STM0694" /db_xref="GeneID:1252214" CDS complement(757131..757661) /gene="fldA" /locus_tag="STM0694" /note="similar to E. coli flavodoxin 1 (AAC73778.1); Blastp hit to AAC73778.1 (176 aa), 97% identity in aa 1 - 176" /codon_start=1 /transl_table=11 /product="flavodoxin 1" /protein_id="NP_459679.1" /db_xref="GeneID:1252214" /translation="MAITGIFFGSDTGNTENIAKMIQKQLGKDVADVHDIAKSSKEDL EGYDILLLGIPTWYYGEAQCDWDDFFPTLEEIDFNGKLVALFGCGDQEDYAEYFCDAL GTIRDIIEPRGATIVGHWPTAGYHFEASKGLADDDHFVGLAIDEDRQPELTAERVEKW VKQVSAELHLDDILNA" misc_feature complement(757152..757661) /gene="fldA" /locus_tag="STM0694" /note="flavodoxin FldA; Validated; Region: PRK09267" /db_xref="CDD:236439" protein_bind complement(757165..757185) /gene="fldA" /locus_tag="STM0694" /note="putative binding site for Fur, RegulonDB: STMS1H000187" /bound_moiety="Fur" regulatory complement(757671..757676) /regulatory_class="ribosome_binding_site" /gene="fldA" /locus_tag="STM0694" /note="putative RBS for fldA; RegulonDB:STMS1H001011" gene complement(757812..758122) /gene="ybfE" /locus_tag="STM0695" /db_xref="GeneID:1252215" CDS complement(757812..758105) /gene="ybfE" /locus_tag="STM0695" /note="similar to E. coli orf, hypothetical protein (AAC73779.1); Blastp hit to AAC73779.1 (120 aa), 90% identity in aa 24 - 120" /codon_start=1 /transl_table=11 /product="LexA regulated, putative SOS response" /protein_id="NP_459680.1" /db_xref="GeneID:1252215" /translation="MAKEQTDRTTLDLFAHERRPGRPKTNPLSRDEQLRINKRNQLKR DKVRGLKRVELKLNAQAVDALNELAEARNISRSELIEEILMKQLMALRGQGLV" misc_feature complement(757836..758105) /gene="ybfE" /locus_tag="STM0695" /note="LexA regulated protein; Provisional; Region: PRK11675" /db_xref="CDD:183272" regulatory complement(758117..758122) /regulatory_class="ribosome_binding_site" /gene="ybfE" /locus_tag="STM0695" /note="putative RBS for ybfE; RegulonDB:STMS1H001012" gene complement(758239..759009) /gene="ybfF" /locus_tag="STM0696" /db_xref="GeneID:1252216" CDS complement(758239..759009) /gene="ybfF" /locus_tag="STM0696" /EC_number="3.1.-.-" /note="similar to E. coli orf, hypothetical protein (AAC73780.1); Blastp hit to AAC73780.1 (254 aa), 89% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="putative enzyme" /protein_id="NP_459681.1" /db_xref="GeneID:1252216" /translation="MKLNIRAQSAQNLHNNSPIVLVHGLFGSLDNLGVLARDLVTDHD IIQVDMRNHGLSPRDPVMDYPAMAQDLLDTLDAQQIEKATFIGHSMGGKAVMALTALA PDRIDRLVAIDIAPVDYHVRRHDRIFAAINAVSESDATSRQQAAGIMRQHLNEEGVIQ FLLKSWAEGEWRFNVPVLWEQYPHIVGWETIPPWEHPALFIPGGNSPYVTEAYRDTLL AQFPLARAHVIAGAGHWVHAEKPEAVLRAIRRYLHDKR" misc_feature complement(758245..759009) /gene="ybfF" /locus_tag="STM0696" /note="esterase; Region: PRK10673" /db_xref="CDD:182637" gene 759184..759736 /gene="seqA" /locus_tag="STM0697" /db_xref="GeneID:1252217" regulatory 759184..759189 /regulatory_class="ribosome_binding_site" /gene="seqA" /locus_tag="STM0697" /note="putative RBS for seqA; RegulonDB:STMS1H001013" CDS 759194..759736 /gene="seqA" /locus_tag="STM0697" /note="inhibits open complex formation; mutation in gene alters cell membrane; similar to E. coli negative modulator of initiation of replication (AAC73781.1); Blastp hit to AAC73781.1 (181 aa), 87% identity in aa 1 - 181" /codon_start=1 /transl_table=11 /product="negative modulator of initiation of replication" /protein_id="NP_459682.1" /db_xref="GeneID:1252217" /translation="MKTIEVDDELYSYIASHTKHIGESASDILRRMLKFSATTQPTAS AVKGTPAAQPVAEAKPVNPVKDKVRAMRELLLSDEYAEQKKAVNRFMLILTTLYSLDH HAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIE HIMQSMQFPAELIEKVCGTI" misc_feature 759194..759733 /gene="seqA" /locus_tag="STM0697" /note="replication initiation negative regulator SeqA; Region: PRK11187" /db_xref="CDD:236874" gene 759749..761401 /gene="pgm" /locus_tag="STM0698" /db_xref="GeneID:1252218" regulatory 759749..759754 /regulatory_class="ribosome_binding_site" /gene="pgm" /locus_tag="STM0698" /note="putative RBS for pgm; RegulonDB:STMS1H001014" CDS 759761..761401 /gene="pgm" /locus_tag="STM0698" /EC_number="5.4.2.2" /note="similar to E. coli phosphoglucomutase (AAC73782.1); Blastp hit to AAC73782.1 (546 aa), 97% identity in aa 1 - 546" /codon_start=1 /transl_table=11 /product="phosphoglucomutase" /protein_id="NP_459683.1" /db_xref="GeneID:1252218" /translation="MAIHNRAGQPAQQSDLINVAQLTAQYYVLKPEAGNAEHAVKFGT SGHRGSAGRHSFNEPHILAIAQAIAEERAKNGITGPCYVGKDTHALSEPAFISVLEVL AANGVDVIVQENNGFTPTPAVSNAILVHNKKGGPLADGIVITPSHNPPEDGGIKYNPP NGGPADTNVTKVVEDRANALLAGGLQGVKRISLDAAMASGHVKAVDLVQPFVEGLADI VDMAAIQKAGLTLGVDPLGGSGIEYWKRIAEHYKLNLTLVNDQVDQTFRFMHLDKDGA IRMDCSSECAMAGLLALRDKFDLAFANDPDYDRHGIVTPAGLMNPNHYLAVAINYLFQ HRPLWGKDVAVGKTLVSSAMIDRVVNDLGRKLVEVPVGFKWFVDGLFDGSFGFGGEES AGASFLRFDGTPWSTDKDGIIMCLLAAEITAVTGKNPQEHYNELAARFGAPSYNRLQA SATSAQKAALSKLSPEMVSASTLAGDPITARLTAAPGNGASIGGLKVMTDNGWFAARP SGTEDAYKIYCESFLGEEHRKQIEKEAVEIVSEVLKNA" misc_feature 759764..761392 /gene="pgm" /locus_tag="STM0698" /note="phosphoglucomutase, alpha-D-glucose phosphate-specific; Region: pgm; TIGR01132" /db_xref="CDD:273459" misc_feature order(759887..759889,759893..759895,759902..759904, 760196..760204,760226..760228,760670..760672, 760676..760678,760682..760687,760808..760810, 760871..760879,760928..760930,760934..760936, 760940..760942,761279..761281,761285..761293, 761306..761308) /gene="pgm" /locus_tag="STM0698" /note="active site" /db_xref="CDD:100094" misc_feature order(759893..759895,760196..760198,760685..760687, 760808..760810,760871..760873,760877..760879, 760928..760930,760934..760936,760940..760942, 761279..761281,761285..761293,761306..761308) /gene="pgm" /locus_tag="STM0698" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100094" misc_feature order(760196..760198,760670..760672,760676..760678, 760682..760684) /gene="pgm" /locus_tag="STM0698" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:100094" gene complement(761516..762001) /locus_tag="STM0699" /db_xref="GeneID:1252219" CDS complement(761516..762001) /locus_tag="STM0699" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459684.1" /db_xref="GeneID:1252219" /translation="MSNPEREVTDIAEILAILSKHEVCRIGFNDNLCPYVVPVNFGYE YQNGRWIFYFHGARTGKKMRLLRKNPAVCIEMDGDHALLRADDPCDYSYAYTSVFATG LASILQTREEMRYGLDVIMRQTDPGKTFSYREDMMKAVCVVRIECDALTCRRHLATQS E" misc_feature complement(761537..762001) /locus_tag="STM0699" /note="Nitroimidazole reductase NimA or a related FMN-containing flavoprotein, pyridoxamine 5'-phosphate oxidase superfamily [Defense mechanisms]; Region: NimA; COG3467" /db_xref="CDD:442690" gene complement(762066..763399) /gene="potE" /locus_tag="STM0700" /db_xref="GeneID:1252220" CDS complement(762066..763385) /gene="potE" /locus_tag="STM0700" /note="similar to E. coli putrescine transport protein (AAC73786.1); Blastp hit to AAC73786.1 (439 aa), 94% identity in aa 1 - 439" /codon_start=1 /transl_table=11 /product="APC family, putrescine/ornithine antiporter" /protein_id="NP_459685.1" /db_xref="GeneID:1252220" /translation="MSKPKSNKMGVVQLTILTMVNMMGSGIIMLPTKLSEVGTISIIS WLVTAVGSMALAWAFAKCGMFSRKSGGMGGYAEYAFGKSGNFMANYTYGVSLLIANVA IAISAVGYGTELFGAALTPLQIGLATIAVLWVCTIANFGGARITGQISSVTVWGVIIP VVGLCIIGWFWFSPSMYVASWNPHHVPFFSAVGSSIAMTLWAFLGLESACANADVVEN PEKNVPIAVLGGTLGAAVIYIVSTNVIAGIVPNMDLANSTAPFGLAFAQMFTPAVGKV IMALMVMSCCGSLLGWQFTIAQVFKSSADEGYFPKVFSRVTKVDAPVQGMLIIVIIQT GLSLMTISPSLNSQFNVLVNLAVVTNIIPYILSMAALVIIQKMANVPSSKAKVANFVA FVGAMYSFYALYSSGEEAMLYGSIVTFLGWTLYGLVSPRFELKNKHG" misc_feature complement(762069..763382) /gene="potE" /locus_tag="STM0700" /note="putrescine transporter; Provisional; Region: potE; PRK10655" /db_xref="CDD:182622" gene complement(763382..765590) /gene="speF" /locus_tag="STM0701" /db_xref="GeneID:1252221" CDS complement(763382..765580) /gene="speF" /locus_tag="STM0701" /EC_number="4.1.1.17" /note="similar to E. coli ornithine decarboxylase isozyme, inducible (AAC73787.1); Blastp hit to AAC73787.1 (732 aa), 91% identity in aa 1 - 732" /codon_start=1 /transl_table=11 /product="ornithine decarboxylase isozyme, inducible" /protein_id="NP_459686.1" /db_xref="GeneID:1252221" /translation="MSELKIAVSRHCPDCFSTHRNIVNVDESRFIDVAAIVLSIDDIE HGKLDEIDATGYGIPVFVATHDEGRVPPEYLPRISGVFEYNESRTAFYGRQLETAASH YETQLRPPFFRALVDYVNQGNSAFDCPGHQGGEFFRRHPAGNQFVEYFGETLFRSDLC NADVAMGDLLIHEGAPCIAQQHAAKVFNADKTYFVLNGTSSSNKVVLNALLTPGDLVL FDRNNHKSNHHGALLQAGATPVYLETARNPYGFIGGIDAHCFEEDYLRELISEVAPQR AREARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFIPMMADCS PLLLELNENDPGILVTQSVHKQQAGFSQTSQIHKKDSHIKGQSRYVPHKRMNNAFMMH ASTSPFYPLFAALDVNAKMHEGVSGRNMWMDCVVNGIDARKLILENCHHIRPFVPELI DGKPWQSYPTSEIASDLRFFHFVPGEHWHAFEGYAEHQYFVDPCKLLLTTPGINAASG EYEDFGVPATILANFLRENGVVPEKCDLNSILFLLTPAEDMAKLQQLVALLARFEKLL EADAPLAEVLPSIYKQHEARYAGYTLRQLCQEMHDLYARHNVKQLQKEMFRKSHFPKV SMNPQEANYAYLRGEVELVRLPEAEGRIAAEGALPYPPGVLCVVPGEIWGGSVLRYFS ALEEGINLLPGFAPELQGVYIEEHDGRKQVWCYVIKPRDAQRSLLKEEKL" misc_feature complement(763424..765580) /gene="speF" /locus_tag="STM0701" /note="ornithine decarboxylase; Provisional; Region: PRK13578" /db_xref="CDD:237434" regulatory complement(763394..763399) /regulatory_class="ribosome_binding_site" /gene="potE" /locus_tag="STM0700" /note="putative RBS for potE; RegulonDB:STMS1H001015" regulatory complement(765585..765590) /regulatory_class="ribosome_binding_site" /gene="speF" /locus_tag="STM0701" /note="putative RBS for speF; RegulonDB:STMS1H001016" gene complement(766342..767027) /gene="kdpE" /locus_tag="STM0702" /db_xref="GeneID:1252222" CDS complement(766342..767019) /gene="kdpE" /locus_tag="STM0702" /note="regulates kdp operon encoding a high-affinity K translocating ATPase (OmpR family); similar to E. coli regulator of kdp operon (transcriptional effector) (AAC73788.1); Blastp hit to AAC73788.1 (225 aa), 91% identity in aa 1 - 224" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with KdpD" /protein_id="NP_459687.1" /db_xref="GeneID:1252222" /translation="MTNVLIVEDEQAIRRFLRAALEGDGLRVYEAETLQRGLLEAATR KPDLIILDLGLPDGDGIDFIRDLRQWSAIPVIVLSARSEESDKIAALDAGADDYLSKP FGIGELQARLRVALRRHAASPCADPIVRFSGVTVDLAARLIHRGDEEIHLTPIEFRLL AVLLNNTGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLEQDPTRPRHFITETG IGYRFMP" misc_feature complement(766345..767019) /gene="kdpE" /locus_tag="STM0702" /note="DNA-binding transcriptional activator KdpE; Provisional; Region: PRK10529" /db_xref="CDD:182522" gene complement(767016..769717) /gene="kdpD" /locus_tag="STM0703" /db_xref="GeneID:1252223" CDS complement(767016..769700) /gene="kdpD" /locus_tag="STM0703" /EC_number="2.7.3.-" /note="regulates kdp operon (high-affinity potassium transport system); similar to E. coli sensor for high-affinity potassium transport system (AAC73789.1); Blastp hit to AAC73789.1 (894 aa), 89% identity in aa 1 - 894" /codon_start=1 /transl_table=11 /product="sensory kinase in two-component regulatory system wtih KdpE" /protein_id="NP_459688.1" /db_xref="GeneID:1252223" /translation="MNDEPLRPDPDRLLEQTPPPHRGKLKIFFGACAGVGKTWAMLAQ AQRLRAQGLDVVIGVVETHGRKETAALLDGLTILPPKRHSHRGRQIREFDLDAALARR PALILMDELAHSNAPGSRHPKRWQDIEELLEAGIDVFTTVNVQHLESLNDVVSGVTGI QVRETVPDPFFDAADEVVLVDLPPDDLRQRLNEGKVYIAGQAERAIEHFFRKGNLIAL RELALRRTADRVDDQMRAWRAHPGEEKVWHTRDAILLCIGHNTGSEKLVRTAARLASR LGSVWHAVYVETPTLHRLPEKQRRAILSALRLAQELGAETATLSDPAEEKAVVRYARE HNLGKIVMGRPASRRWWRRDAFADRLARRAPDLDQVIVALEEPPARALAQTPDNRPFK EKWRGQIQGCLVAVALCAITTLIAMQWLVTFDAANLVMLYLLGVVVIALLYGRWPSVV ATVINVASFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLTAGVRYQARVARYR EQRTRHLYEMSKALAVGRSEHDIAATSERFIASTFQARSQILLPDANGKLLPLTHQQG MTPWDDAIARWSFDKGQPAGAGTDTLPGVPYQILPLKSADKTYGLAIVEPGNLRQLMV PEQQRLLETFTLLVANALERLTLTASEEQARLASERESIRNALLAALSHDLRTPLTVL FGQAEILTLDLASAGSPHARQASEIRQHILNTTRLVNNLLDMARIQSGGFNLKKEWLT LEEVVGSALQMLEPGLLHPITLSLPQQLTLIHVDGPLFERVLINLLENAVKYAGPQAS IGIDAAVKDDRLQLDVWDNGPGIPAGQEQKIFDKFARGNKESAVPGVGLGLAICHAIV EVHGGTLTAYNRPQGGACFRVTLPQGKPPELDDFHEDM" misc_feature complement(767019..769700) /gene="kdpD" /locus_tag="STM0703" /note="sensor protein KdpD; Provisional; Region: PRK10490" /db_xref="CDD:236701" regulatory complement(767022..767027) /regulatory_class="ribosome_binding_site" /gene="kdpE" /locus_tag="STM0702" /note="putative RBS for kdpE; RegulonDB:STMS1H001017" gene complement(769697..770291) /gene="kdpC" /locus_tag="STM0704" /db_xref="GeneID:1252224" CDS complement(769697..770281) /gene="kdpC" /locus_tag="STM0704" /EC_number="7.2.2.6" /note="similar to E. coli high-affinity potassium transport system (AAC73790.1); Blastp hit to AAC73790.1 (190 aa), 77% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="P-type ATPase, high-affinity potassium transport system, C chain" /protein_id="NP_459689.1" /db_xref="GeneID:1252224" /translation="MIGLRPAFSTMLFLLLLTGGVYPLLTTALGQWWFPWQANGSLIH KDNVIRGSALIGQSFTAAGYFHGRPSATADTPYNPLASGGSNLAASNPELDAQIQARV AALRAANPQASSAVPVELATASASGLDNNLTPGAAAWQIPRVAAARQLPVEQVAQLVA EYTHRPLARFLGQPVVNIVELNLALDALQGHRAK" misc_feature complement(769706..770281) /gene="kdpC" /locus_tag="STM0704" /note="potassium-transporting ATPase subunit KdpC; Region: PRK00315" /db_xref="CDD:234724" regulatory complement(769712..769717) /regulatory_class="ribosome_binding_site" /gene="kdpC" /locus_tag="STM0704" /note="putative RBS for kdpD; RegulonDB:STMS1H001018" regulatory complement(770286..770291) /regulatory_class="ribosome_binding_site" /gene="kdpC" /locus_tag="STM0704" /note="putative RBS for kdpC; RegulonDB:STMS1H001019" gene complement(770290..772353) /gene="kdpB" /locus_tag="STM0705" /db_xref="GeneID:1252225" CDS complement(770290..772338) /gene="kdpB" /locus_tag="STM0705" /EC_number="7.2.2.6" /note="similar to E. coli ATPase of high-affinity potassium transport system, B chain (AAC73791.1); Blastp hit to AAC73791.1 (682 aa), 91% identity in aa 1 - 681" /codon_start=1 /transl_table=11 /product="P-type ATPase, high-affinity potassium transport system, B chain" /protein_id="NP_459690.1" /db_xref="GeneID:1252225" /translation="MSRKQLALFEPVLLVQALTDAVKKLSPRAQWRNPVMFVVWAGSV LTTLLTLAMVTGQIAGSALFTGIISLWLWFTVLFANFAEALAEGRSKAQANSLKGVKK TAFARRLRAPRHDAQADNVPAAELRKGDIVLVKAGDIIPCDGEVIEGGASVDESAITG ESAPVIRESGGDFASVTGGTRILSDWLVIACSVNPGETFLDRMIAMVEGAQRRKTPNE IALTILLIALTIVFLLATATLWPFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGV AGMSRMLGANVIATSGRAVEAAGDVDVLLLDKTGTITLGNRQASDFIPARGVDERTLA DAAQLASLADETPEGRSIVILAKQRFNLRERDVQSLHATFVPFTAQSRMSGINIDNRM IRKGSVDAIRRHVESNGGHFPADVEQNVENVARLGATPLVVVEGAHVLGVIALKDIVK GGIKERFAQLRKMGIKTVMITGDNRLTAAAIAAEAGVDDFLAEATPEAKLALIRQYQA EGRLVAMTGDGTNDAPALAQADVAVAMNSGTQAAKEAGNMVDLDSNPTKLIEVVHIGK QMLMTRGSLTTFSIANDVAKYFAIIPAAFAATYPQLNALNVMGLHSPNSAILSAVIFN ALIIIFLIPLALKGVSYKPLSASAMLRRNLWIYGLGGLVVPFIGIKVIDVLLTLLGLA " misc_feature complement(770293..772332) /gene="kdpB" /locus_tag="STM0705" /note="K+ transport ATPase, ATPase subunit KdpB [Inorganic ion transport and metabolism]; Region: KdpB; COG2216" /db_xref="CDD:441818" regulatory complement(772348..772353) /regulatory_class="ribosome_binding_site" /gene="kdpB" /locus_tag="STM0705" /note="putative RBS for kdpB; RegulonDB:STMS1H001020" gene complement(772359..774130) /gene="kdpA" /locus_tag="STM0706" /db_xref="GeneID:1252226" CDS complement(772359..774038) /gene="kdpA" /locus_tag="STM0706" /EC_number="7.2.2.6" /note="similar to E. coli ATPase of high-affinity potassium transport system, A chain (AAC73792.1); Blastp hit to AAC73792.1 (557 aa), 85% identity in aa 1 - 557" /codon_start=1 /transl_table=11 /product="P-type ATPase, high-affinity potassium transport system, A chain" /protein_id="NP_459691.1" /db_xref="GeneID:1252226" /translation="MAAQGFLLIASFLLILLVLAKPLGSGLARLIAAVPLPGVAGIER ILWRTLGITDHEMNWRQYLLALLTLNLLGLGILFCLLFWQEWLPLNPQRLPGLSGDLA LNTAVSFVTNTNWQAYSGESTLSYFSQMAGLTVQNFLSAATGIAVVFALIRAFTRQNV HTLGNAWQDLVRITLWILFPVALIIALFFIQQGVPQNLSAYQPITTLEGAKQLLPMGP VASQEAIKMLGTNGGGFFNANSSHPFENPTALTNLAQMLAIFLIPAALCFAFGEAAGD RCQGRALLWAMSFIFVVCVAVVMWAEVQGNPHLLAAGADSSVNMEGKETRFGVLASSL FAVVTTAASCGAVNAMHDSFTALGGMVPMWLMQIGEVVFGGVGSGLYGMLLFVLLAVF IAGLMIGRTPEYLGKKIDVREMKMTALAILVTPMLVLLGSALAMMTDAGRSAMLNPGP HGFSEVLYAVSSAANNNGSAFAGLSANSPFWNCLLAFCMFVGRFGVIIPVMAIAGSLV SKKVQPASQGTLATHGALFIGLLIGTVLLVGALTFIPALALGPVAEHFSLP" misc_feature complement(772365..774038) /gene="kdpA" /locus_tag="STM0706" /note="K+-transporting ATPase, KdpA subunit [Inorganic ion transport and metabolism]; Region: KdpA; COG2060" /db_xref="CDD:441663" gene complement(774038..774134) /locus_tag="STM0707" /db_xref="GeneID:1252227" CDS complement(774038..774127) /locus_tag="STM0707" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_459692.1" /db_xref="GeneID:1252227" /translation="MSAGVITGIVLVFLLLGYLVYALINAEAF" misc_feature complement(774041..774127) /locus_tag="STM0707" /note="K(+)-transporting ATPase subunit F; Region: kdpF; PRK14748" /db_xref="CDD:173209" regulatory complement(774047..774052) /regulatory_class="ribosome_binding_site" /locus_tag="STM0707" /note="putative RBS for kdpA; RegulonDB:STMS1H001021" regulatory complement(774106..774114) /regulatory_class="minus_10_signal" /locus_tag="STM0707" /note="putative -10_signal for kdpA; RegulonDB:STMLTH004695" regulatory complement(774122..774130) /regulatory_class="minus_35_signal" /locus_tag="STM0707" /note="putative -35_signal for kdpA; RegulonDB:STMLTH004695" regulatory complement(774129..774134) /regulatory_class="ribosome_binding_site" /locus_tag="STM0707" /note="putative RBS for STM0707; RegulonDB:STMS1H001022" protein_bind complement(774208..774228) /note="putative binding site for KdpE, RegulonDB: STMS1H000240" /bound_moiety="KdpE" gene 774450..774670 /gene="ybfA" /locus_tag="STM0708" /db_xref="GeneID:1252228" regulatory 774450..774455 /regulatory_class="ribosome_binding_site" /gene="ybfA" /locus_tag="STM0708" /note="putative RBS for ybfA; RegulonDB:STMS1H001023" CDS 774464..774670 /gene="ybfA" /locus_tag="STM0708" /note="similar to E. coli orf, hypothetical protein (AAC73793.1); Blastp hit to AAC73793.1 (68 aa), 82% identity in aa 1 - 68" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459693.1" /db_xref="GeneID:1252228" /translation="MEHYKDYPAHVIFVRRAFAVIAGVLALPVMLFWKDRARFYSYLH RVWSKTSDKPVWMAQAEKATCDFY" misc_feature 774473..774655 /gene="ybfA" /locus_tag="STM0708" /note="Protein of unknown function (DUF2517); Region: DUF2517; pfam10725" /db_xref="CDD:431458" gene 774771..776202 /gene="phrB" /locus_tag="STM0709" /db_xref="GeneID:1252229" regulatory 774771..774776 /regulatory_class="ribosome_binding_site" /gene="phrB" /locus_tag="STM0709" /note="putative RBS for phrB; RegulonDB:STMS1H001024" CDS 774781..776202 /gene="phrB" /locus_tag="STM0709" /EC_number="4.1.99.3" /note="deoxyribodipyrimidine photolyase. (SW:PHR_SALTY)" /codon_start=1 /transl_table=11 /product="deoxyribodipyrimidine photolyase (photoreactivation)" /protein_id="NP_459694.1" /db_xref="GeneID:1252229" /translation="MPTHLVWFRRDLRLQDNLALAAACRDASARVLALYISTPAQWQA HDMAPRQAAFISAQLNALQTALAEKGIPLLFHEVADFNASIETVKNVCRQHDVSHLFY NYQYEFNERQRDAAVEKTLPSVICEGFDDSVILAPGAVMTGNHEMYKVFTPFKNAWLK RLKEDIPPCVPAPKIRVSGALSTPLTPVSLNYPQQAFDAALFPVEENAVIAQLRQFCA QGADEYALRRDFPAVDGTSRLSASLATGGLSPRQCLHRLLAEQPQALDGGPGSVWLNE LIWREFYRHLMTWYPALCKHQPFIRWTKRVAWQENPHYFQAWQKGETGYPIVDAAMRQ LNATGWMHNRLRMITASFLVKDLLIDWRLGERYFMSQLIDGDLAANNGGWQWAASTGT DAAPYFRIFNPTTQGERFDRDGEFIRQWLPALRDIPGKAIHEPWRWAEKAGVVLDYPR PIVEHKQARIATLSAYEAARKGA" misc_feature 774781..776199 /gene="phrB" /locus_tag="STM0709" /note="deoxyribodipyrimidine photolyase; Provisional; Region: PRK10674" /db_xref="CDD:236734" gene complement(776241..777733) /gene="ybgH" /locus_tag="STM0710" /db_xref="GeneID:1252230" CDS complement(776241..777722) /gene="ybgH" /locus_tag="STM0710" /note="similar to E. coli putative transport protein (AAC73803.1); Blastp hit to AAC73803.1 (493 aa), 88% identity in aa 1 - 493" /codon_start=1 /transl_table=11 /product="putative POT family transport protein" /protein_id="NP_459695.1" /db_xref="GeneID:1252230" /translation="MNKQASQPRAIYYVVALQIWEYFSFYGMRALLILYLTNQLKYDD NHAYELFSAYCSLVYVTPILGGYLADKVLGNRMAVMLGAFLMAIGHLVLGASEIAPTF LYLSLAIIVCGYGLFKSNISCLLGELYQPEDPRRDGGFSLLYAAGNIGSIVAPIACGY VQEEYSWAMGFALAAIGMLAGLVIFLCGNRHFTHTTGVNKAVLCARNYLLPNWGWLLI LLVAAPLLITVLFWKEWSVYALIVATAIGLVVLAKIYRQAQTAKQRKELGLIVTLTLF SMLFWAFAQQGGSSISLYIDRFVNRDILGYSVPTAMFQSVNAFAVMLCGVVLAWLVKE SVSGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAAYGHSSMPLMVLGLAVMGFAEL FIDPVAMSQITRIDIPGVTGVLTGIYMLLSGAIANYLAGVIADQTSQSAFDASGAVNY AINAYVDVFEQITWGALACVGVVLLIWLYQSFKFKSRALAVES" misc_feature complement(776244..777722) /gene="ybgH" /locus_tag="STM0710" /note="dipeptide permease; Region: PRK15462" /db_xref="CDD:237971" misc_feature complement(order(776550..776552,776760..776762, 776769..776774,776871..776873,777270..777272, 777279..777284,777291..777293,777369..777371, 777645..777647,777657..777659)) /gene="ybgH" /locus_tag="STM0710" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340904" regulatory complement(777728..777733) /regulatory_class="ribosome_binding_site" /gene="ybgH" /locus_tag="STM0710" /note="putative RBS for ybgH; RegulonDB:STMS1H001025" gene 778039..778794 /gene="ybgI" /locus_tag="STM0711" /db_xref="GeneID:1252231" regulatory 778039..778044 /regulatory_class="ribosome_binding_site" /gene="ybgI" /locus_tag="STM0711" /note="putative RBS for ybgI; RegulonDB:STMS1H001026" CDS 778051..778794 /gene="ybgI" /locus_tag="STM0711" /note="similar to E. coli orf, hypothetical protein (AAC73804.1); Blastp hit to AAC73804.1 (247 aa), 97% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459696.1" /db_xref="GeneID:1252231" /translation="MKNTELEQLINDKLNSAAISDYAPNGLQVEGKETVQKIVTGVTA SQALLDEAVRLQADAVIVHHGYFWKGESPVIRGMKRRRLKTLLANDINLYGWHLPLDA HPELGNNAQLAALLGITVKGEIEPLVPWGELSMPVPGLELASWIEARLGRKPLWCGDT GPENVQRVAWCTGGGQSFIDSAARFGVDAFITGEVSEQTIHSAREQGLHFYAAGHHAT ERGGIRALSEWLNENTALDVTFIDIPNPA" misc_feature 778051..778791 /gene="ybgI" /locus_tag="STM0711" /note="type 2 GTP cyclohydrolase I; Region: PRK10799" /db_xref="CDD:182741" gene 778799..779466 /gene="ybgJ" /locus_tag="STM0712" /db_xref="GeneID:1252232" regulatory 778799..778804 /regulatory_class="ribosome_binding_site" /gene="ybgJ" /locus_tag="STM0712" /note="putative RBS for ybgJ; RegulonDB:STMS1H001027" CDS 778810..779466 /gene="ybgJ" /locus_tag="STM0712" /note="similar to E. coli putative carboxylase (AAC73805.1); Blastp hit to AAC73805.1 (218 aa), 86% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="putative carboxylase" /protein_id="NP_459697.1" /db_xref="GeneID:1252232" /translation="MQRARCYLLGETAVVLELEPPITLASQKRIWRLTQRLVDMPNVV EAIPGMNNITVILREPQTLALDAIERLQRWWEESEALEPDSRSVEIPVIYGGAGGPDL AAVARHSGLSEKQVVELHASVEYVVWFLGFQPGFPYLGNLPEPLHMPRRAEPRLQVPA GSVGIGGAQTGIYPLSTPGGWQLIGLTPLKLFDPMRETPVLLRPGDSVRFVPQKEGIC " misc_feature 778834..779442 /gene="ybgJ" /locus_tag="STM0712" /note="Carboxyltransferase domain, subdomain C and D; Region: CT_C_D; cl19310" /db_xref="CDD:473162" gene 779449..780392 /gene="ybgK" /locus_tag="STM0713" /db_xref="GeneID:1252233" regulatory 779449..779454 /regulatory_class="ribosome_binding_site" /gene="ybgJ" /locus_tag="STM0712" /note="putative RBS for ybgK; RegulonDB:STMS1H001028" CDS 779460..780392 /gene="ybgK" /locus_tag="STM0713" /note="similar to E. coli putative carboxylase (AAC73806.1); Blastp hit to AAC73806.1 (310 aa), 84% identity in aa 1 - 310" /codon_start=1 /transl_table=11 /product="putative carboxylase" /protein_id="NP_459698.1" /db_xref="GeneID:1252233" /translation="MLNIIRAGIYTSVQDSGRHGFRQSGLSHCGALDKPAFQTANLLV GNDANAPALEITLGQLVVEFENETWFALTGAGCEAQLDDQPVWTGWRLPVKAGQRLTL HRPLHGMRSYLAVAGGIAVPEVMGSYSTDLKSGIGGLEGRLLKDGDRLATGKPSRQFS GPQGVKQLLWGNRIRALPGPEYREFDRASQEAFWRSPWQLSPQSNRMGYRLQGQSLTR TTDRELLSHGLLPGVVQVPYNGQPIVLMNDAQTTGGYPRIACIIEADMYHLAQIPLGQ PIHFVQCSLEEALNARRERQRYLEQLTWRLQHEH" misc_feature 779460..780386 /gene="ybgK" /locus_tag="STM0713" /note="biotin-dependent carboxylase uncharacterized domain; Region: urea_amlyse_rel; TIGR00724" /db_xref="CDD:129807" gene 780368..781116 /gene="ybgL" /locus_tag="STM0714" /db_xref="GeneID:1252234" regulatory 780368..780373 /regulatory_class="ribosome_binding_site" /gene="ybgL" /locus_tag="STM0714" /note="putative RBS for ybgL; RegulonDB:STMS1H001029" CDS 780382..781116 /gene="ybgL" /locus_tag="STM0714" /note="similar to E. coli putative lactam utilization protein (AAC73807.1); Blastp hit to AAC73807.1 (244 aa), 80% identity in aa 1 - 244" /codon_start=1 /transl_table=11 /product="putative lactam utilization protein" /protein_id="NP_459699.1" /db_xref="GeneID:1252234" /translation="MNIDLNADLGEGCASDSELLTLVSSANIACGFHAGDAQTMLTCV REALKNGVAIGAHPSFPDRDNFGRTAMVLPPETVYAQTLYQIGALGAIVQAQGGVMRH VKPHGMLYNQAAKDPHLAQAIAKAVHDYDPSLILVGLAGSELIRAGERHRLVTRQEVF ADRGYQADGSLVPRMQPGALIHDEEQALAQTLDMVQAGRVKSVTGVWTTVTAQTVCIH GDGEYALAFARRLRAAFNARNIHVIA" misc_feature 780382..781101 /gene="ybgL" /locus_tag="STM0714" /note="5-oxoprolinase subunit PxpA; Region: PRK05406" /db_xref="CDD:235446" misc_feature order(780403..780405,780550..780552,780583..780585, 780691..780693,780697..780702,780712..780714, 780859..780861,780868..780870,780892..780894, 780901..780903,781033..781035) /gene="ybgL" /locus_tag="STM0714" /note="putative active site [active]" /db_xref="CDD:212111" gene 781440..781571 /locus_tag="STM0715" /db_xref="GeneID:1252235" CDS 781440..781571 /locus_tag="STM0715" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459700.1" /db_xref="GeneID:1252235" /translation="MTTYQEIEARLIRCFTITSWIACQIASYMDFKLFTHSNFFSEN" gene 781618..782197 /locus_tag="STM0716" /db_xref="GeneID:1252236" regulatory 781618..781623 /regulatory_class="ribosome_binding_site" /locus_tag="STM0716" /note="putative RBS for STM0716; RegulonDB:STMS1H001030" CDS 781631..782197 /locus_tag="STM0716" /note="similar to E. coli recombinase involved in phase variation; regulator for fimA (AAC77268.1); Blastp hit to AAC77268.1 (200 aa), 60% identity in aa 9 - 192" /codon_start=1 /transl_table=11 /product="putative phage integrase" /protein_id="NP_459701.1" /db_xref="GeneID:1252236" /translation="MKRKYLTQEEIEKLLSATDRMPFPERNRCLILMAFIHGFRASEL LGLRLSDIDLAGRQLYIRRLKNGFSTCHPLLPDEYNVLKSWLRARKYLEKGADGDWLF LSLRRHPLSRQQFFYILREAGRLAELTIAPHPHMLRHACGYALADKGIDTRLIQDYLG HRNIQHTVRYTASNAGRFHGIWRKKRRV" misc_feature 781634..782191 /locus_tag="STM0716" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain; Region: DNA_BRE_C; cl00213" /db_xref="CDD:469662" misc_feature order(781706..781708,781748..781753,781970..781972, 781976..781978,782033..782035,782138..782140) /locus_tag="STM0716" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:271197" misc_feature order(781748..781750,782033..782035,782042..782044, 782111..782113,782138..782140) /locus_tag="STM0716" /note="active site" /db_xref="CDD:271197" gene 782650..782992 /locus_tag="STM0717" /db_xref="GeneID:1252237" regulatory 782650..782655 /regulatory_class="ribosome_binding_site" /locus_tag="STM0717" /note="putative RBS for STM0717; RegulonDB:STMS1H001031" CDS 782657..782992 /locus_tag="STM0717" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459702.1" /db_xref="GeneID:1252237" /translation="MQPKSRTGQGVREQCLDRARRHFSYRHGMAPGPRKGADMLFPQH EAAVAGAVPGRQWPEENNLMTQEYAEMSTGRGGTSKCRYSMGAKIFLLLLAVSTVAAL FSLYQVLTY" gene 782988..783734 /locus_tag="STM0718" /db_xref="GeneID:1252238" regulatory 782988..782993 /regulatory_class="ribosome_binding_site" /locus_tag="STM0718" /note="putative RBS for STM0718; RegulonDB:STMS1H001032" CDS 782994..783734 /locus_tag="STM0718" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459703.1" /db_xref="GeneID:1252238" /translation="MQTLTRVLPPLRLIMFCQSGENPTQFPDTGGLCVEDCVRLRTPE GLLDRLRRWPGAMVISAGRPSTQLLLWQQVFLRYPRTVVFCSSNAFLPVDVSVEGYFR HLRLIKRAMSVRVLARMAELAIWSSLQTSPYEEEMKSALSVPELVMEINSRTLVRLLS ERLPKQGRRVLGLLLSGCSPEMTARMLGTGVRQVWLAEQTLKQRWDIPTGVPLSDAVR IRIPDVGPDISQQSGLVKTGAGNAPDLC" gene 784020..785171 /locus_tag="STM0719" /db_xref="GeneID:1252239" CDS 784020..785171 /locus_tag="STM0719" /EC_number="5.4.99.9" /note="similar to E. coli UDP-galactopyranose mutase (AAC75097.1); Blastp hit to AAC75097.1 (367 aa), 39% identity in aa 5 - 366" /codon_start=1 /transl_table=11 /product="putative UDP-galactopyranose mutase" /protein_id="NP_459704.1" /db_xref="GeneID:1252239" /translation="MQRKKILIVGAGLSGAVIARQLAEQGHVVNIIDQRSHIGGNAYD ARDEHTGIMVHVYGPHIFHTDNETVWNYVNKYAEMMPYINKVKATVNGQVFSLPINLH TINQFFGVACSPDDARKLLLQKCDSTILEPQNFEQQALRFIGKELYEAFFKGYTIKQW GLHPSALPASVLKRIPVRFNYDDNYFNHKFQGIPKFGYTQMVKSIVEHENIAVELCRS FTQEMRTNYDHVFFSGALDAFYSCQYGRLEYRTLDFKKIICQSDYQGCAVMNYCSIDT PYTRITEHKYFSPWERHEASICYQEYSRECEAGDIPYYPVRRADKMDLLNKYLSRAKK EKNITFIGRLGTYRYLDMDITIAEALQTADVYLTSLYEQKEMPAFTVTV" misc_feature 784032..785111 /locus_tag="STM0719" /note="UDP-galactopyranose mutase [Cell wall/membrane/envelope biogenesis]; Region: Glf; COG0562" /db_xref="CDD:440328" gene 785168..786064 /locus_tag="STM0720" /db_xref="GeneID:1252240" CDS 785168..786064 /locus_tag="STM0720" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_459705.1" /db_xref="GeneID:1252240" /translation="MMKCTALIVTFNRLEKLKKSVRETVKAGFSSIVIVNNGSSDGTR EWLSSLSEPGITILNLKDNLGGAGGFKVGSQYICSYSNADWVFFYDDDAYPEINILKH FSLLDTSRYRIFASRVQDTYGRSCRMNLPFIRVPSTVFETIYYAMRPERFSPVRTQVT DVQTVSFVGMIIDRKVLNNHLNDIHDELFLYYDDFFFGYKLVLSGQKIRYSPEIKFIH DISIHGKCICPEWKVYYLCRNLLLLRKLLPVPRIFSVLSIVLRLSKYLAILPWQRKKF RYLYFIWQGILHGLKGISGKYH" misc_feature 785183..785872 /locus_tag="STM0720" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:472172" misc_feature order(785192..785194,785198..785200,785270..785272, 785435..785437,785441..785443) /locus_tag="STM0720" /note="active site" /db_xref="CDD:133028" gene 786070..787210 /locus_tag="STM0721" /db_xref="GeneID:1252241" regulatory 786070..786075 /regulatory_class="ribosome_binding_site" /locus_tag="STM0721" /note="putative RBS for STM0721; RegulonDB:STMS1H001033" CDS 786077..787210 /locus_tag="STM0721" /note="similar to E. coli putative colanic acid biosynthesis glycosyl transferase (AAC75105.1); Blastp hit to AAC75105.1 (406 aa), 25% identity in aa 199 - 399" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_459706.1" /db_xref="GeneID:1252241" /translation="MKRLCYFVNSDWYFDLHWTERAIAARDAGYEIHIISHFIGEEII KKFKTLGFICHNVSLVAQSFNMFVFFRAFLNARKIIKEINPDLLHCITLKPCLIGGVS ARRSNSPVVISFVGLGRIFLYNTVPMRILRALTVLVYKYIAGNKRGVFIFEHDKDRRK ISRLVGIDYHKTIVIEGAGINPDIYKFSIEKKHEIPIVLFASRMLWSKGLGDLIEAKK ILRQKNIHFVLNVAGILAEDDKDAIPLELIHHWHNEGLINWLGRSSNVYELIQKSNIV ALPSIYPEGVPRLLLEASSVGRACIAYDTGGCDSLIIHNYNGLIVKSNSAQELAVELE YLLKNPQIRLEMGANGRKRVKELFSSILVINKTLQIYKDTIGC" misc_feature 786083..787180 /locus_tag="STM0721" /note="capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins; Region: GT4_CapM-like; cd03808" /db_xref="CDD:340837" misc_feature order(786161..786163,786677..786685,786872..786874, 786941..786943) /locus_tag="STM0721" /note="putative ADP-binding pocket [chemical binding]; other site" /db_xref="CDD:340837" gene 787333..788109 /locus_tag="STM0722" /db_xref="GeneID:1252242" regulatory 787333..787338 /regulatory_class="ribosome_binding_site" /locus_tag="STM0722" /note="putative RBS for STM0722; RegulonDB:STMS1H001034" CDS 787339..788109 /locus_tag="STM0722" /codon_start=1 /transl_table=11 /product="putative ABC transporter permease protein" /protein_id="NP_459707.1" /db_xref="GeneID:1252242" /translation="MNDLKEALARHQLWISLGWNDVLGRYRRSVLGPFWITISMGVTI SAMGPLYGSLFSSGSENFIMHLTLGMIFWAFLSATINESCGIFNESASIIKQSDLPLY LYILRVFYRQFMIMLHNFIIIPFVIFFTNTSVNLDILLFIPAIVITSISLISTGMILA IFCTRYRDMGPVVQSVVTLCFFITPIIWTSEQLPKGRKEFVDYNIFYYFMEMLRKPLM GTVPDVTIWFYTIITSIIMLMVSTLVLTKYRSRIVYWL" misc_feature 787348..788106 /locus_tag="STM0722" /note="ABC-type polysaccharide/teichoic acid/polyol phosphate export permease [Carbohydrate transport and metabolism]; Region: TagG; COG1682" /db_xref="CDD:441288" gene 788108..788823 /locus_tag="STM0723" /db_xref="GeneID:1252243" regulatory 788108..788113 /regulatory_class="ribosome_binding_site" /locus_tag="STM0723" /note="putative RBS for STM0723; RegulonDB:STMS1H001035" CDS 788113..788823 /locus_tag="STM0723" /note="similar to E. coli ATP-binding component of putrescine transport system (AAC73942.1); Blastp hit to AAC73942.1 (404 aa), 28% identity in aa 61 - 259" /codon_start=1 /transl_table=11 /product="putative ABC-type polysaccharide/polyol phosphate transport system, ATPase component" /protein_id="NP_459708.1" /db_xref="GeneID:1252243" /translation="MKISCKNVGVILPIFNSSHRSFKKTFLQAASGGRIGSSNTGIIE VEALKKIDFTLTEGNRLALIGHNGSGKTTLLRVLAGAYKPTSGKYECIGRVTSLIDPM MGMDGELTGLENIKLRGLFLGLSKNEIKNITEDVIEFSELGDFIKIPVRTYSSGMVLR LGFSISTAINPEILLMDEWMSVGDSDFKRKAEMRLNSFISKAGIMVMATHDDELAKSV CNKFIRLEHGEIVSKGGF" misc_feature 788119..788814 /locus_tag="STM0723" /note="ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism]; Region: TagH; COG1134" /db_xref="CDD:440749" gene 788912..790695 /locus_tag="STM0724" /db_xref="GeneID:1252244" regulatory 788912..788917 /regulatory_class="ribosome_binding_site" /locus_tag="STM0724" /note="putative RBS for STM0724; RegulonDB:STMS1H001036" CDS 788917..790695 /locus_tag="STM0724" /codon_start=1 /transl_table=11 /product="putative glycosyltransferase, cell wall biogenesis" /protein_id="NP_459709.1" /db_xref="GeneID:1252244" /translation="MYFLLQKVILPNIDLCTEEQLYFRTQGGKYNYTSRNLLVPRHKV AYFDTFFNAFSIKKWKKYTTLTSLFLRVNIIGRGTITVRHKENGVIRVLKQIDFKSSC NISDEIEIDISKINFGYIYVEWQSDEDSVLNGFELLTKDHVSKSSMALVITTYNRKEA VTKTINRINKTLLTQSEFKDRFKLIVVNNGEAINHPSGNGIIVINNENLGGSGGFMRG LIEAGKINDVKHVIFMDDDGSCEIESICRTHAFLLMAKDKNTVVTGCMLFEDNPAIIH ESGAIWHRDFLHYPDKHYLDAREIDSLDTFDNERKIGYGGWWFFAFNINAIEYYSFPF FVRGDDLLFGYMHKKHNIVTLNGVASWQMDFERKISVLNSYLNFRTVAVPALISKRKF AALLLSVFFVREVFLASFSCRYELARAMIMSYNDCLSGREFWEDNVDLLEIRKRINAI THNEKFNVEGIDIVNGCVDYPCSGKEKAIYKFFRCITLNGHLIPAFFLIKKPIVVDYR HYHPTKFSFRRITIYHLNIENGKLLKLTHSKMEFFKVIINGLFTAVKNFYRFKSAKKE MKNSLPYLTSKLFWYKKFNKKSEDKY" misc_feature 788929..789312 /locus_tag="STM0724" /note="Galactofuranosyltransferase 2 N-terminal; Region: Glft2_N; pfam17994" /db_xref="CDD:436195" misc_feature 789367..>789798 /locus_tag="STM0724" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:472172" misc_feature order(789373..789375,789379..789381,789475..789477, 789619..789621,789625..789627) /locus_tag="STM0724" /note="active site" /db_xref="CDD:133028" gene 790884..791721 /locus_tag="STM0725" /db_xref="GeneID:1252245" regulatory 790884..790889 /regulatory_class="ribosome_binding_site" /locus_tag="STM0725" /note="putative RBS for STM0725; RegulonDB:STMS1H001037" CDS 790888..791721 /locus_tag="STM0725" /codon_start=1 /transl_table=11 /product="putative glycosyltransferase, cell wall biogenesis" /protein_id="NP_459710.1" /db_xref="GeneID:1252245" /translation="MEKSLLVIVRHKPGRTRLLMRALQSINDQTFKKINIIIFCMEEE LKCHNVDDFYLKELSNIYSVIYDESCIFNAIKMSESNYLCFMDDDDSWAPEYVSRLLS VLANIQSTYSSVNAIACHTNKVAEIAENNRIIINSTQPWNHYLNAGPVSFDVIYYRNS IPLSSCLFDKNSVIDMIESHKLSSPAFFWPFFIHYLAENDVWILPEALAFYHFRENDD FEFGNYTVINNELFDIECKIAENKMMRSIDDSSLLNVLLSNIANNSLFHKISYIENKI K" misc_feature 790927..>791205 /locus_tag="STM0725" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cd00761" /db_xref="CDD:132997" gene 791779..793674 /locus_tag="STM0726" /db_xref="GeneID:1252246" CDS 791779..793674 /locus_tag="STM0726" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_459711.1" /db_xref="GeneID:1252246" /translation="MVSRRIYRPRDLFSLMQSTLATEKFFISAYEIGIIDNFPEIRVQ AEVSARENRVRRFGGEPEILISEIYDEILKKHPQLSPATVKKIIDLEIQMEKIVLYKN ARGSCLFEKAISDGCKVILISDMYLPSAILKELLTSCGYDISNIPVYSSGEERYSKNS GKLFSIVKKNENVDIASWMHVGDNVHADILNAKKLGINTLHADWSEYNHGISNHWKAK DIIGESICKTLLLKQVSAFHQNDPLNEIGFKVFGPLLLGYVSWLANQLKIHKIDKALF LARDAHLIYKIYNEYFSEEHVKCEYLYISRASAYMVGMTDWPMHRIWHLFGGKNKKSI KKILAIAGLDASEHISDIHHVGFPDEEYIPVSGEEHKVHWLINKLFPYILLKNTQHRE VYADYFKTACEGYKNIALIDVGWMGNIQSVFARSLGAQWAEKQIHGFYLATFAGANDN RSIYNKMFGWLTNYGHPNDKCDLFLSGGVEIMEFAMADNTGSTIGYKKTDNGIIPVRE DSSGSEIEYLKKAARLQSGIISFFEYVKPLIQKGNYAALSSVVLSEPFFELIARPSSA QLDALSSLTHSESAGSNAERIVLAKKLPLKDKLFPGENYIKELNASYWKEGFKRINRK KFWAKYN" misc_feature 791782..>792720 /locus_tag="STM0726" /note="Predicted sugar hydrolase, contains GT1 and HAD domains [General function prediction only]; Region: COG5610" /db_xref="CDD:444341" gene 793737..793879 /locus_tag="STM0727" /db_xref="GeneID:1252247" regulatory 793737..793742 /regulatory_class="ribosome_binding_site" /locus_tag="STM0727" /note="putative RBS for STM0727; RegulonDB:STMS1H001038" CDS 793742..793879 /locus_tag="STM0727" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459712.1" /db_xref="GeneID:1252247" /translation="MPWRDHVNPDGEVVSCCDNVIITGYHRLFVHPLWMFIMVFDVHS R" gene 793916..794719 /gene="nei" /locus_tag="STM0728" /db_xref="GeneID:1252248" regulatory 793916..793921 /regulatory_class="ribosome_binding_site" /gene="nei" /locus_tag="STM0728" /note="putative RBS for nei; RegulonDB:STMS1H001039" CDS 793928..794719 /gene="nei" /locus_tag="STM0728" /EC_number="3.2.-.-" /note="removes oxidized pyrimidines; may also remove oxidized purines in absence of MutY and Fpg; similar to E. coli endonuclease VIII and DNA N-glycosylase with an AP lyase activity (AAC73808.1); Blastp hit to AAC73808.1 (263 aa), 88% identity in aa 1 - 262" /codon_start=1 /transl_table=11 /product="endonuclease VIII" /protein_id="NP_459713.1" /db_xref="GeneID:1252248" /translation="MPEGPEIRRAADNLEAAIKGKPLTDVWFAFAQLKPYESQLTGQL VTRIETRGKALLTHFSNGLTLYSHNQLYGVWRVIDTGEIPQTTRILRVRLQTADKTIL LYSASDIEMLTAEQLTTHPFLQRVGPDVLDARLTPEEVKARLLSPRFRNRQFSGLLLD QSFLAGLGNYLRVEILWQVGLTGQHKAKDLNEAQLNALSHALLDIPRLSYTTRGQADE NKHHGALFRFKLFHRDGEACERCGGIIEKTTLSSRPFYWCPHCQK" misc_feature 793928..794716 /gene="nei" /locus_tag="STM0728" /note="endonuclease VIII; Provisional; Region: PRK10445" /db_xref="CDD:182467" gene complement(794774..795833) /gene="abrB" /locus_tag="STM0729" /db_xref="GeneID:1252249" CDS complement(794774..795820) /gene="abrB" /locus_tag="STM0729" /note="similar to E. coli putative transport protein (AAC73809.1); Blastp hit to AAC73809.1 (363 aa), 80% identity in aa 16 - 361" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_459714.1" /db_xref="GeneID:1252249" /translation="MPILQWFLLFLLSLLISLIFLYLHLPAAMLLGPMIAGIVLSLRG STLQLPRGIFLAAQAILGCMIAQNLTGSILTTLALYWPVVLLVLLVTLLSSAVVGWLL VRYSSLPGNTGAWGSSPGGAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTRL ILGDSAAAVSQQVIWFPPLSGNVLTTLLLAIVAGIAGRLMRIPSGTMLLPMLAGALLH SQGIIEIELPEWLLAVAYMAIGWRIGLGFDRQVFFMALRPLPQILLSIFALMAICAAM AWGMAYYMQIDFMTAYLATSPGGLDTVAAIAAGSSADMALIMAMQTLRLFSILLTGPA VARFISTYAPKQPL" misc_feature complement(794786..795817) /gene="abrB" /locus_tag="STM0729" /note="Uncharacterized membrane protein AbrB, regulator of aidB expression [General function prediction only]; Region: AbrB; COG3180" /db_xref="CDD:442413" regulatory complement(795828..795833) /regulatory_class="ribosome_binding_site" /gene="abrB" /locus_tag="STM0729" /note="putative RBS for abrB; RegulonDB:STMS1H001040" gene complement(795957..797303) /gene="gltA" /locus_tag="STM0730" /db_xref="GeneID:1252250" CDS complement(795957..797240) /gene="gltA" /locus_tag="STM0730" /EC_number="2.3.3.1" /note="citrate synthase. (SW:CISY_SALTY)" /codon_start=1 /transl_table=11 /product="citrate synthase" /protein_id="NP_459715.1" /db_xref="GeneID:1252250" /translation="MADTKAKITLTGDTTIELDVLKGTLGQDVIDIRSLGSKGVFTFD PGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLYGEKPTQEEYD EFRTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREI AAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCETYEVNPVLER AMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKML EEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKD DLLEVAMELEHIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGW IAHWNEMHTDGMKIARPRQLYTGYDKRDFKSALKR" misc_feature complement(795993..797240) /gene="gltA" /locus_tag="STM0730" /note="citrate synthase; Region: gltA; PRK05614" /db_xref="CDD:180164" gene 797200..797586 /locus_tag="STM0731" /db_xref="GeneID:1252251" CDS 797200..797586 /locus_tag="STM0731" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459716.1" /db_xref="GeneID:1252251" /translation="MSPVRVIFAFVSAIYGLLSALLLKTAGTQTCLLHVIFLVVSAGK ILCMHQSTVTSLLFGSPLCERGDDLGTEQWALAGNDLINFELAANQERSNPSNVTCLS LITVLKEWVNIIVLLHNLLTGERVTP" regulatory complement(797248..797253) /regulatory_class="ribosome_binding_site" /gene="gltA" /locus_tag="STM0730" /note="putative RBS for gltA; RegulonDB:STMS1H001041" regulatory complement(797277..797285) /regulatory_class="minus_10_signal" /gene="gltA" /locus_tag="STM0730" /note="putative -10_signal for gltA; RegulonDB:STMLTH004696" regulatory complement(797295..797303) /regulatory_class="minus_35_signal" /gene="gltA" /locus_tag="STM0730" /note="putative -35_signal for gltA; RegulonDB:STMLTH004696" protein_bind complement(797603..797665) /note="putative binding site for ArcA, RegulonDB: STMS1H000023" /bound_moiety="ArcA" protein_bind complement(797605..797637) /note="putative binding site for IHF, RegulonDB: STMS1H000233" /bound_moiety="IHF" protein_bind complement(797635..797655) /note="putative binding site for CRP, RegulonDB: STMS1H000072" /bound_moiety="CRP" protein_bind 797684..797704 /note="putative binding site for CRP, RegulonDB: STMS1H000057" /bound_moiety="CRP" protein_bind 797725..797787 /note="putative binding site for ArcA, RegulonDB: STMS1H000021" /bound_moiety="ArcA" gene 797906..798384 /gene="sdhC" /locus_tag="STM0732" /db_xref="GeneID:1252252" regulatory 797906..797914 /regulatory_class="minus_35_signal" /gene="sdhC" /locus_tag="STM0732" /note="putative -35_signal for sdhC; RegulonDB:STMLTH004697" regulatory 797931..797939 /regulatory_class="minus_10_signal" /gene="sdhC" /locus_tag="STM0732" /note="putative -10_signal for sdhC; RegulonDB:STMLTH004697" regulatory 797982..797987 /regulatory_class="ribosome_binding_site" /gene="sdhC" /locus_tag="STM0732" /note="putative RBS for sdhC; RegulonDB:STMS1H001042" CDS 797995..798384 /gene="sdhC" /locus_tag="STM0732" /EC_number="1.3.5.1" /note="similar to E. coli succinate dehydrogenase, cytochrome b556 (AAC73815.1); Blastp hit to AAC73815.1 (129 aa), 92% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, cytochrome b556" /protein_id="NP_459717.1" /db_xref="GeneID:1252252" /translation="MIRNVKKQRPVNLDLQTIRFPITAIASILHRVSGVITFIAVGIL LWLLGTSLSSPEGFQQAADIMDGFIVKFIMWGILTALAYHVIVGIRHMLMDFGYLEET FEAGQRSAKISFVITVVLSLLAGVLVW" misc_feature 797995..798381 /gene="sdhC" /locus_tag="STM0732" /note="succinate dehydrogenase cytochrome b556 subunit; Region: sdhC; PRK09487" /db_xref="CDD:181900" misc_feature order(798019..798030,798043..798051,798055..798057, 798064..798066,798085..798087,798265..798267, 798274..798276,798280..798282) /gene="sdhC" /locus_tag="STM0732" /note="Iron-sulfur protein interface [active]" /db_xref="CDD:239579" misc_feature order(798052..798054,798073..798078,798085..798087) /gene="sdhC" /locus_tag="STM0732" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:239579" misc_feature order(798085..798087,798118..798120,798127..798129, 798136..798141,798166..798168,798214..798216, 798277..798279,798364..798366) /gene="sdhC" /locus_tag="STM0732" /note="SdhD (CybS) interface [polypeptide binding]; other site" /db_xref="CDD:239579" misc_feature order(798085..798087,798103..798108,798244..798249) /gene="sdhC" /locus_tag="STM0732" /note="proximal heme binding site [chemical binding]; other site" /db_xref="CDD:239579" gene 798365..798725 /gene="sdhD" /locus_tag="STM0733" /db_xref="GeneID:1252253" regulatory 798365..798370 /regulatory_class="ribosome_binding_site" /gene="sdhD" /locus_tag="STM0733" /note="putative RBS for sdhD; RegulonDB:STMS1H001043" CDS 798378..798725 /gene="sdhD" /locus_tag="STM0733" /EC_number="1.3.5.1" /note="similar to E. coli succinate dehydrogenase, hydrophobic subunit (AAC73816.1); Blastp hit to AAC73816.1 (115 aa), 94% identity in aa 1 - 115" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, hydrophobic subunit" /protein_id="NP_459718.1" /db_xref="GeneID:1252253" /translation="MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELT FEAWTGFFSSAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLAVRLILQLVIVVALV VYVIYGFVVVWGV" misc_feature 798378..798722 /gene="sdhD" /locus_tag="STM0733" /note="succinate dehydrogenase membrane anchor subunit; Region: sdhD; PRK09488" /db_xref="CDD:181901" misc_feature order(798435..798437,798510..798512,798519..798521, 798621..798623,798687..798689,798696..798698) /gene="sdhD" /locus_tag="STM0733" /note="SdhC subunit interface [polypeptide binding]; other site" /db_xref="CDD:239574" misc_feature order(798444..798446,798456..798458,798579..798581, 798588..798590,798600..798602) /gene="sdhD" /locus_tag="STM0733" /note="proximal heme binding site [chemical binding]; other site" /db_xref="CDD:239574" misc_feature order(798486..798488,798498..798500,798504..798506) /gene="sdhD" /locus_tag="STM0733" /note="cardiolipin binding site [active]" /db_xref="CDD:239574" misc_feature order(798609..798611,798618..798623,798630..798632) /gene="sdhD" /locus_tag="STM0733" /note="Iron-sulfur protein interface [active]" /db_xref="CDD:239574" misc_feature 798624..798626 /gene="sdhD" /locus_tag="STM0733" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:239574" gene 798708..800491 /gene="sdhA" /locus_tag="STM0734" /db_xref="GeneID:1252254" regulatory 798708..798713 /regulatory_class="ribosome_binding_site" /gene="sdhD" /locus_tag="STM0733" /note="putative RBS for sdhA; RegulonDB:STMS1H001044" CDS 798725..800491 /gene="sdhA" /locus_tag="STM0734" /EC_number="1.3.5.1" /note="similar to E. coli succinate dehydrogenase, flavoprotein subunit (AAC73817.1); Blastp hit to AAC73817.1 (588 aa), 97% identity in aa 1 - 588" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, flavoprotein subunit" /protein_id="NP_459719.1" /db_xref="GeneID:1252254" /translation="MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRS HTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHM GLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTI FSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHIN TGDGVGMALRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERY APNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELS RTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEQGEDVVIPGLFAVGEIACV SVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGVLRDASESDVEGSLERLNRWNNN RNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNT QRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPERDDANWLCHTLYQPQTESM TRRSVNMEPKLRPAFPPKIRTY" misc_feature 798803..800488 /gene="sdhA" /locus_tag="STM0734" /note="FAD binding domain; Region: FAD_binding_2; cl46878" /db_xref="CDD:481218" gene 800494..801224 /gene="sdhB" /locus_tag="STM0735" /db_xref="GeneID:1252255" regulatory 800494..800499 /regulatory_class="ribosome_binding_site" /gene="sdhB" /locus_tag="STM0735" /note="putative RBS for sdhB; RegulonDB:STMS1H001045" CDS 800505..801224 /gene="sdhB" /locus_tag="STM0735" /EC_number="1.3.5.1" /note="similar to E. coli succinate dehydrogenase, iron sulfur protein (AAC73818.1); Blastp hit to AAC73818.1 (238 aa), 96% identity in aa 1 - 238" /codon_start=1 /transl_table=11 /product="succinate dehydrogenase, Fe-S protein" /protein_id="NP_459720.1" /db_xref="GeneID:1252255" /translation="MMKLEFSIYRYNPDVDNAPRMQDYTLEGEEGRDMMLLDALIQLK EKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALTQPGKKIVIRPLPGLPVIR DLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSC PSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLEGMSDAFSVFRCHSIMNCVSVCP KGLNPTRAIGHIKSMLLQRSA" misc_feature 800517..801221 /gene="sdhB" /locus_tag="STM0735" /note="succinate dehydrogenase iron-sulfur subunit; Reviewed; Region: sdhB; PRK05950" /db_xref="CDD:235652" gene 801627..804549 /gene="sucA" /locus_tag="STM0736" /db_xref="GeneID:1252256" regulatory 801627..801635 /regulatory_class="minus_35_signal" /gene="sucA" /locus_tag="STM0736" /note="putative -35_signal for sucA; RegulonDB:STMLTH004698" regulatory 801654..801662 /regulatory_class="minus_10_signal" /gene="sucA" /locus_tag="STM0736" /note="putative -10_signal for sucA; RegulonDB:STMLTH004698" regulatory 801737..801742 /regulatory_class="ribosome_binding_site" /gene="sucA" /locus_tag="STM0736" /note="putative RBS for sucA; RegulonDB:STMS1H001046" CDS 801748..804549 /gene="sucA" /locus_tag="STM0736" /EC_number="1.2.4.2" /note="similar to E. coli 2-oxoglutarate dehydrogenase (decarboxylase component) (AAC73820.1); Blastp hit to AAC73820.1 (933 aa), 94% identity in aa 1 - 933" /codon_start=1 /transl_table=11 /product="2-oxoglutarate dehydrogenase decarboxylase component" /protein_id="NP_459721.1" /db_xref="GeneID:1252256" /translation="MQNSALKAWLDSSYLSGSNQSWIEQLYEDFLTDPDSVDANWRLT FQQLPGTGVKPDQLHSKTREYFRRQALAGSRHSSTISDPDTNVKQVKVLQLINAYRFR GHQHANLDPLGLWKQERVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLDAL KQTYCGPIGAEYMHITSTEEKRWIQQRIESGRAAFSADEKKRFLNELTAAEGLERYLG AKFPGAKRFSLEGGDALIPMLKEMVRHAGNSGTREVVLGMAHRGRLNVLINVLGKKPQ DLFDEFAGKHKEHLGTGDVKYHMGFSSDIETEGGLVHLALAFNPSHLEIVSPVVMGSV RARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQV GFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFI DLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEADKVATLEDATEMVNL YRDALDAGECVVKEWRPMNMHSFTWSPYLNHEWDEAYPNKVEMKRLQELAKRISTVPE AIEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFF HRHAVIHNQTNGSTYTPLQHIHSGQGQFKVWDSVLSEEAVLAFEYGYATAEPRTLTIW EAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQL CAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSTLDELANGS FQPAIGEIDELDPKAVKRVVMCSGKVYYDLLEQRRKNDQKDVAIVRIEQLYPFPHKAV QEALQPYAHVHDFVWCQEEPLNQGAWYCSQHHFREVTPFGAALRYAGRPASASPAVGY MSVHQKQQQDLVNDALNVD" misc_feature 801751..804540 /gene="sucA" /locus_tag="STM0736" /note="2-oxoglutarate dehydrogenase E1 component; Reviewed; Region: sucA; PRK09404" /db_xref="CDD:236499" gene 804553..805772 /gene="sucB" /locus_tag="STM0737" /db_xref="GeneID:1252257" regulatory 804553..804558 /regulatory_class="ribosome_binding_site" /gene="sucB" /locus_tag="STM0737" /note="putative RBS for sucB; RegulonDB:STMS1H001047" CDS 804564..805772 /gene="sucB" /locus_tag="STM0737" /EC_number="2.3.1.61" /note="similar to E. coli 2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component) (AAC73821.1); Blastp hit to AAC73821.1 (405 aa), 96% identity in aa 1 - 405" /codon_start=1 /transl_table=11 /product="2-oxoglutarate dehydrogenase (dihydrolipoyltranssuccinase E2 component)" /protein_id="NP_459722.1" /db_xref="GeneID:1252257" /translation="MSSVDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDK VVLEVPASADGILDAVLEEEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQ QASLEEQNNDALSPAIRRLLAEHNLEASAIKGTGVGGRLTREDVEKHLAKGESKAPAV EPAAQPALGARGEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYG EVFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGL VTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPI INPPQSAILGMHAIKDRPMAVDGKVEILPMMYLALSYDHRLIDGRESVGFLVTIKELL EDPTRLLLDV" misc_feature 804567..805769 /gene="sucB" /locus_tag="STM0737" /note="2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase; Region: PRK05704" /db_xref="CDD:235571" gene 805897..807080 /gene="sucC" /locus_tag="STM0738" /db_xref="GeneID:1252258" regulatory 805897..805902 /regulatory_class="ribosome_binding_site" /gene="sucC" /locus_tag="STM0738" /note="putative RBS for sucC; RegulonDB:STMS1H001048" CDS 805914..807080 /gene="sucC" /locus_tag="STM0738" /EC_number="6.2.1.5" /note="similar to E. coli succinyl-CoA synthetase, beta subunit (AAC73822.1); Blastp hit to AAC73822.1 (388 aa), 98% identity in aa 1 - 388" /codon_start=1 /transl_table=11 /product="succinyl-CoA synthetase, beta subunit" /protein_id="NP_459723.1" /db_xref="GeneID:1252258" /translation="MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWV VKCQVHAGGRGKAGGVKVVKSKEEIRAFAENWLGKRLVTYQTDANGQPVNQILVEAAT DIGKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQG RELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGA DGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIV KLHGGEPANFLDVGGGATKERVTEAFKIILSDDNVKAVLVNIFGGIVRCDLIADGIIG AVEEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKSLTDAAQQVVAAVEGK" misc_feature 805914..807077 /gene="sucC" /locus_tag="STM0738" /note="ADP-forming succinate--CoA ligase subunit beta; Region: sucC; PRK00696" /db_xref="CDD:234813" gene 807066..807949 /gene="sucD" /locus_tag="STM0739" /db_xref="GeneID:1252259" regulatory 807066..807071 /regulatory_class="ribosome_binding_site" /gene="sucD" /locus_tag="STM0739" /note="putative RBS for sucD; RegulonDB:STMS1H001049" CDS 807080..807949 /gene="sucD" /locus_tag="STM0739" /EC_number="6.2.1.5" /note="similar to E. coli succinyl-CoA synthetase, alpha subunit (AAC73823.1); Blastp hit to AAC73823.1 (289 aa), 95% identity in aa 1 - 289" /codon_start=1 /transl_table=11 /product="succinyl-CoA synthetase, alpha subunit" /protein_id="NP_459724.1" /db_xref="GeneID:1252259" /translation="MSVLINKDTKVICQGFTGSQGTFHSEQAIAYGTQMVGGVTPGKG GTTHLGLPVFNTVREAVEATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPT LDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIMPGHIHKPGKVGIVSRSGTLTYE AVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILKLFQEDPQTEAIVMIGEIGGSAEEEA AAYIKDHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRS LADIGEALKAIIK" misc_feature 807083..807946 /gene="sucD" /locus_tag="STM0739" /note="Succinyl-CoA synthetase, alpha subunit [Energy production and conversion]; Region: SucD; COG0074" /db_xref="CDD:439844" protein_bind 809165..809187 /note="putative binding site for FNR, RegulonDB: STMS1H000169" /bound_moiety="FNR" protein_bind 809233..809257 /note="putative binding site for FNR, RegulonDB: STMS1H000159" /bound_moiety="FNR" gene 809352..811100 /gene="cydA" /locus_tag="STM0740" /db_xref="GeneID:1252260" regulatory 809352..809360 /regulatory_class="minus_35_signal" /gene="cydA" /locus_tag="STM0740" /note="putative -35_signal for cydA; RegulonDB:STMLTH004699" regulatory 809379..809387 /regulatory_class="minus_10_signal" /gene="cydA" /locus_tag="STM0740" /note="putative -10_signal for cydA; RegulonDB:STMLTH004699" protein_bind 809448..809459 /gene="cydA" /locus_tag="STM0740" /note="putative binding site for ArcA, RegulonDB: STMS1H000019" /bound_moiety="ArcA" regulatory 809521..809526 /regulatory_class="ribosome_binding_site" /gene="cydA" /locus_tag="STM0740" /note="putative RBS for cydA; RegulonDB:STMS1H001050" CDS 809532..811100 /gene="cydA" /locus_tag="STM0740" /EC_number="1.10.3.-" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome d terminal oxidase, polypeptide subunit I (AAC73827.1); Blastp hit to AAC73827.1 (523 aa), 96% identity in aa 2 - 523" /codon_start=1 /transl_table=11 /product="cytochrome d terminal oxidase, polypeptide subunit I" /protein_id="NP_459725.1" /db_xref="GeneID:1252260" /translation="MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSG KQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLM AFFLESTFVGLFFFGWDRLSKVQHMCVTWLVALGSNLSALWILVANGWMQNPIAADFN FETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAYYMLKGRDFAFAKR SFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPASFTLFGIPD QDKQENHLAIQIPYALGIIATRSVDTPVIGLKDLMVQHEERIRNGMKAYELLEQLRAG STDQAVRDQFNSMKKDLGYGLLLKRYTPNVTDATEAQIQQATKDSIPRVAPLYFAFRI MVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQP WAIGEVLPTAVANSSLTVGDLLFSMFLICGLYTLFLVAELFLMFKFARLGPSSLKTGR YHFEQSTVTSQPAR" misc_feature 809532..811097 /gene="cydA" /locus_tag="STM0740" /note="cytochrome bd-I ubiquinol oxidase subunit CydA; Region: PRK15097" /db_xref="CDD:185052" gene 811103..812255 /gene="cydB" /locus_tag="STM0741" /db_xref="GeneID:1252261" regulatory 811103..811108 /regulatory_class="ribosome_binding_site" /gene="cydB" /locus_tag="STM0741" /note="putative RBS for cydB; RegulonDB:STMS1H001051" CDS 811116..812255 /gene="cydB" /locus_tag="STM0741" /EC_number="1.10.3.-" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome d terminal oxidase polypeptide subunit II (AAC73828.1); Blastp hit to AAC73828.1 (379 aa), 92% identity in aa 1 - 379" /codon_start=1 /transl_table=11 /product="cytochrome d terminal oxidase polypeptide subunit II" /protein_id="NP_459726.1" /db_xref="GeneID:1252261" /translation="MIDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDT ERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPV GFDYRSKIEDPRWRNMWDWGVFIGSFVPPLVIGVAFGNLLQGVPFHVDEYLRLYYTGN FFQLLNPFGLLAGIVSVGMIITQGATYLQMRTVGELHLRARATSQIAALVTLVCFALA GVWVMYGIDGYVVTSAIDHHAASNPLTKEVAREAGAWLVNFNNAPILWLVPALGVVLP LLTILTSRMEKGAWAFLFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQ MTLNLMTWVAAVFVPIILIYTSWCYWKMFGRITKEHIESNTHSLY" misc_feature 811116..812252 /gene="cydB" /locus_tag="STM0741" /note="cytochrome d ubiquinol oxidase subunit II; Region: PRK15003" /db_xref="CDD:184965" gene 812263..812383 /gene="ybgT" /locus_tag="STM0742" /db_xref="GeneID:1252262" regulatory 812263..812268 /regulatory_class="ribosome_binding_site" /gene="ybgT" /locus_tag="STM0742" /note="putative RBS for ybgT; RegulonDB:STMS1H001052" CDS 812270..812383 /gene="ybgT" /locus_tag="STM0742" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_459727.1" /db_xref="GeneID:1252262" /translation="MWYFAWILGTLLACAFGIITALALEHVEAGKTGQEES" misc_feature 812270..812380 /gene="ybgT" /locus_tag="STM0742" /note="Predicted outer membrane lipoprotein [Function unknown]; Region: COG4890" /db_xref="CDD:443918" gene 812505..812801 /gene="ybgE" /locus_tag="STM0743" /db_xref="GeneID:1252263" regulatory 812505..812510 /regulatory_class="ribosome_binding_site" /gene="ybgE" /locus_tag="STM0743" /note="putative RBS for ybgE; RegulonDB:STMS1H001053" CDS 812520..812801 /gene="ybgE" /locus_tag="STM0743" /note="similar to E. coli orf, hypothetical protein (AAC73829.1); Blastp hit to AAC73829.1 (97 aa), 89% identity in aa 8 - 96" /codon_start=1 /transl_table=11 /product="putative inner membrane lipoprotein" /protein_id="NP_459728.1" /db_xref="GeneID:1252263" /translation="MKYIYAVMDKRPLRALSFVMAIVLAGCMFWDPSRFAARTSTLEI WHGLLLMWAVCAGIIHGVGFRPESVHWQGIFCPLLADIVLIVGLIFFFL" misc_feature 812520..812798 /gene="ybgE" /locus_tag="STM0743" /note="hypothetical protein; Provisional; Region: PRK10588" /db_xref="CDD:236721" gene 813018..813434 /gene="ybgC" /locus_tag="STM0744" /db_xref="GeneID:1252264" regulatory 813018..813023 /regulatory_class="ribosome_binding_site" /gene="ybgC" /locus_tag="STM0744" /note="putative RBS for ybgC; RegulonDB:STMS1H001054" CDS 813030..813434 /gene="ybgC" /locus_tag="STM0744" /note="similar to E. coli orf, hypothetical protein (AAC73830.1); Blastp hit to AAC73830.1 (134 aa), 92% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="putative esterase" /protein_id="NP_459729.1" /db_xref="GeneID:1252264" /translation="MNKYMFRWPIRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHH FSQQVLLAERVAFVVRKMTLEYYAPARLDDMLEVQTEITSMRGTALVFTQRIVNAENT LLNEAEVLIVCVDPLKMKPRALPKSIVAEFKQ" misc_feature 813042..813428 /gene="ybgC" /locus_tag="STM0744" /note="acyl-CoA thioesterase YbgC; Provisional; Region: PRK10800" /db_xref="CDD:182742" misc_feature order(813126..813128,813198..813200,813204..813206, 813285..813296) /gene="ybgC" /locus_tag="STM0744" /note="active site" /db_xref="CDD:238329" gene 813417..814123 /gene="tolQ" /locus_tag="STM0745" /db_xref="GeneID:1252265" regulatory 813417..813422 /regulatory_class="ribosome_binding_site" /gene="ybgC" /locus_tag="STM0744" /note="putative RBS for tolQ; RegulonDB:STMS1H001055" CDS 813431..814123 /gene="tolQ" /locus_tag="STM0745" /note="required for outer membrane integrity, uptake of group A colicins, and translocation of phage DNA to cytoplasm; similar to E. coli inner membrane protein, membrane-spanning, maintains integrity of cell envelope; tolerance to group A colicins (AAC73831.1); Blastp hit to AAC73831.1 (230 aa), 97% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="tol protein, membrane-spanning inner membrane protein" /protein_id="NP_459730.1" /db_xref="GeneID:1252265" /translation="MTDMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNA AAREAEAFEDKFWSGIELSRLYQESQGRRDSLSGSEQIFYSGFKEFVRLHRANSHAPE AVVEGASRAMRISMNRELETLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVK QATLQMVAPGIAEALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILH RQAFTVSESNKG" misc_feature 813440..814120 /gene="tolQ" /locus_tag="STM0745" /note="Tol-Pal system protein TolQ; Region: PRK10801" /db_xref="CDD:182743" gene 814115..814555 /gene="tolR" /locus_tag="STM0746" /db_xref="GeneID:1252266" regulatory 814115..814120 /regulatory_class="ribosome_binding_site" /gene="tolR" /locus_tag="STM0746" /note="putative RBS for tolR; RegulonDB:STMS1H001056" CDS 814127..814555 /gene="tolR" /locus_tag="STM0746" /note="uptake of group A colicins (TonB independent), and translocation of phage DNA to cytoplasm; similar to E. coli putative inner membrane protein, involved in the tonB-independent uptake of group A colicins (AAC73832.1); Blastp hit to AAC73832.1 (142 aa), 85% identity in aa 1 - 142" /codon_start=1 /transl_table=11 /product="tol protein, role in outer membrane integrity" /protein_id="NP_459731.1" /db_xref="GeneID:1252266" /translation="MARTRGRGRRELKSEINIVPLLDVLLVLLLIFMATAPIITQSVE VDLPEANQSQAVSSNDDPPVIIEVSGVGQYSVVVDKDRMDQLPSEQVIAEVKRHLQAN PKTVFLIGGAKEVPYDEIIKALNLLHSAGVKSVGLMTQPI" misc_feature 814130..814552 /gene="tolR" /locus_tag="STM0746" /note="colicin uptake protein TolR; Provisional; Region: PRK11024" /db_xref="CDD:236824" gene 814607..815843 /gene="tolA" /locus_tag="STM0747" /db_xref="GeneID:1252267" regulatory 814607..814612 /regulatory_class="ribosome_binding_site" /gene="tolA" /locus_tag="STM0747" /note="putative RBS for tolA; RegulonDB:STMS1H001057" CDS 814620..815843 /gene="tolA" /locus_tag="STM0747" /note="similar to E. coli membrane spanning protein, required for outer membrane integrity (AAC73833.1); Blastp hit to AAC73833.1 (421 aa), 70% identity in aa 1 - 420" /codon_start=1 /transl_table=11 /product="tol protein, membrane spanning protein" /protein_id="NP_459732.1" /db_xref="GeneID:1252267" /translation="MSKATEQNDKLKRAIIISAVLHIILFAVLIWSSFDEHIEASAGG GGGSAIDAVMVDPGAVVQQYNRQQDQQASARRAEEERKKLQQQQAEELQQKQAAEQER LKQLEKERLAAQEQQKQAEEAAKLAQQQQQQAEEAAKAAADAKKKAEAEAAKAAADAK KKAEAEAVKAAADAKKKAEAEAAKAAADAKKKAEAEAAKAAAEAKKKAEAEAAKAAAE AKKKADAEAAKAAAEAKKKADAAAAKAAAEAKKKADAAAAKAAADAKKKAAAEKAAAA EGVDDLLGDLSSGKNAPKTGGGAKGNGQPSKDSGTSGANGGATGADISAYAKQIQVAI QSRLYDASLYQGKQCVLHISLAPDGSLKSITSEGGDPALCQAALMAAKTAKIPKPPSQ AVYEKIKDAKLDFKL" misc_feature 814620..815840 /gene="tolA" /locus_tag="STM0747" /note="cell envelope integrity inner membrane protein TolA; Provisional; Region: tolA; PRK09510" /db_xref="CDD:236545" gene 815950..817259 /gene="tolB" /locus_tag="STM0748" /db_xref="GeneID:1252268" regulatory 815950..815955 /regulatory_class="ribosome_binding_site" /gene="tolB" /locus_tag="STM0748" /note="putative RBS for tolB; RegulonDB:STMS1H001058" CDS 815967..817259 /gene="tolB" /locus_tag="STM0748" /note="uptake of group A colicins, and translocation of phage DNA to cytoplasm, may be part of multiprotein peptidoglycan recycling complex (Two domains); similar to E. coli periplasmic protein involved in the tonb-independent uptake of group A colicins (AAC73834.1); Blastp hit to AAC73834.1 (430 aa), 95% identity in aa 1 - 430" /codon_start=1 /transl_table=11 /product="tol protein required for outer membrane integrity" /protein_id="NP_459733.1" /db_xref="GeneID:1252268" /translation="MKQALRVAFGFLMLWAAVLHAEVRIEITQGVDSARPIGVVPFKW AGPGAAPEDIGGIVAADLRNSGKFNPLDRSRLPQQPATAQEVQPTAWSALGIDAVVVG QVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIK GAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVT FESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGTKLAFALSKTGSLNLYVMDLA SGQIRQITDGRSNNTEPTWFPDSQTLAFTSDQAGRPQVYKMNINGGAAQRITWEGSQN QDADVSSDGKFMVMVSSNNGQQHIAKQDLVTGGVQVLSSTFLDETPSLAPNGTMVIYS SSQGMGSVLNLVSTDGRFKARLPATDGQVKSPAWSPYL" misc_feature 816003..817247 /gene="tolB" /locus_tag="STM0748" /note="tol-pal system beta propeller repeat protein TolB; Region: propeller_TolB; TIGR02800" /db_xref="CDD:274305" gene 817280..817818 /gene="pal" /locus_tag="STM0749" /db_xref="GeneID:1252269" regulatory 817280..817285 /regulatory_class="ribosome_binding_site" /gene="pal" /locus_tag="STM0749" /note="putative RBS for pal; RegulonDB:STMS1H001059" CDS 817294..817818 /gene="pal" /locus_tag="STM0749" /note="uptake of group A colicins, and translocation of phage DNA to cytoplasm; similar to E. coli peptidoglycan-associated lipoprotein (AAC73835.1); Blastp hit to AAC73835.1 (173 aa), 97% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="tol protein required for outer membrane integrity" /protein_id="NP_459734.1" /db_xref="GeneID:1252269" /translation="MQLNKVLKGLMIALPVMAIAACSSNKNASNDGSEGGMLNGAGTG MDANGNGNMSSEEQARLQMQQLQQNNIVYFDLDKYDIRSDFAAMLDAHANFLRSNPSY KVTVEGHADERGTPEYNISLGERRANAVKMYLQGKGVSADQISIVSYGKEKPAVLGHD EAAYAKNRRAVLVY" misc_feature 817294..817815 /gene="pal" /locus_tag="STM0749" /note="peptidoglycan-associated lipoprotein Pal; Region: PRK10802" /db_xref="CDD:182744" gene 817819..818616 /gene="ybgF" /locus_tag="STM0750" /db_xref="GeneID:1252270" regulatory 817819..817824 /regulatory_class="ribosome_binding_site" /gene="ybgF" /locus_tag="STM0750" /note="putative RBS for ybgF; RegulonDB:STMS1H001060" CDS 817828..818616 /gene="ybgF" /locus_tag="STM0750" /note="similar to E. coli orf, hypothetical protein (AAC73836.1); Blastp hit to AAC73836.1 (263 aa), 90% identity in aa 1 - 263" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459735.1" /db_xref="GeneID:1252270" /translation="MSSNFRHHLLSLSLLVGIAAPWAAFAQAPISSVGSGSVEDRVTQ LERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVMERQKQIMLQLGSLN NGGAAQPAAGDQSGAATTATPAPDAGTATSGAPVQSGDANTDYNAAIALVQDKSRQDD AIVAFQNFIKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA MYKVGVIMQDKGDTAKAKAVYQQVINKYPGTDGAKQAQKRLNAM" misc_feature 817828..818613 /gene="ybgF" /locus_tag="STM0750" /note="tol-pal system protein YbgF; Provisional; Region: PRK10803" /db_xref="CDD:182745" misc_feature 818248..818337 /gene="ybgF" /locus_tag="STM0750" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(818251..818253,818260..818265,818272..818277, 818281..818283,818365..818367,818374..818379, 818386..818391,818395..818400,818467..818469, 818485..818490,818497..818502,818509..818511) /gene="ybgF" /locus_tag="STM0750" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 818350..818451 /gene="ybgF" /locus_tag="STM0750" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 818464..818556 /gene="ybgF" /locus_tag="STM0750" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" protein_bind 818659..818677 /note="putative binding site for FIS, RegulonDB: STMS1H000149" /bound_moiety="FIS" gene 818778..818850 /gene="lysT" /locus_tag="STM0751" /db_xref="GeneID:1252271" tRNA 818778..818850 /gene="lysT" /locus_tag="STM0751" /product="tRNA-Lys" /db_xref="GeneID:1252271" gene 818985..819057 /gene="valT" /locus_tag="STM0752" /db_xref="GeneID:1252272" tRNA 818985..819057 /gene="valT" /locus_tag="STM0752" /product="tRNA-Val" /db_xref="GeneID:1252272" gene 819064..819136 /gene="lysW" /locus_tag="STM0753" /db_xref="GeneID:1252273" tRNA 819064..819136 /gene="lysW" /locus_tag="STM0753" /product="tRNA-Lys" /db_xref="GeneID:1252273" gene 819189..819261 /gene="lysY" /locus_tag="STM0754" /db_xref="GeneID:1252274" tRNA 819189..819261 /gene="lysY" /locus_tag="STM0754" /product="tRNA-Lys" /db_xref="GeneID:1252274" gene 819399..819471 /gene="lysZ" /locus_tag="STM0755" /db_xref="GeneID:1252275" tRNA 819399..819471 /gene="lysZ" /locus_tag="STM0755" /product="tRNA-Lys" /db_xref="GeneID:1252275" gene 820225..821279 /gene="nadA" /locus_tag="STM0756" /db_xref="GeneID:1252276" regulatory 820225..820230 /regulatory_class="ribosome_binding_site" /gene="nadA" /locus_tag="STM0756" /note="putative RBS for nadA; RegulonDB:STMS1H001062" CDS 820236..821279 /gene="nadA" /locus_tag="STM0756" /note="quinolinate synthetase A. (SW:NADA_SALTY)" /codon_start=1 /transl_table=11 /product="quinolinate synthetase, A protein" /protein_id="NP_459736.1" /db_xref="GeneID:1252276" /translation="MSVMFDPQAAIYPFPPKPTPLNDDEKQFYREKIKRLLKERNAVM VAHYYTDPEIQQLAEETGGCISDSLEMARFGTKHAASTLLVAGVRFMGETAKILSPEK TILMPTLAAECSLDLGCPIDEFSAFCDAHPDRTVVVYANTSAAVKARADWVVTSSIAV ELIEHLDSLGEKIIWAPDRHLGNYVQKQTGADVLCWQGACIVHDEFKTQALTRLKKIY PDAALLVHPESPQSIVEMADAVGSTSQLIKAAKTLPHRQLIVATDRGIFYKMQQAVPE KELLEAPTAGEGATCRSCAHCPWMAMNGLKAIAEGLEQGGAAHEIQVDAALREGALLP LNRMLDFAATLRA" misc_feature 820260..821264 /gene="nadA" /locus_tag="STM0756" /note="quinolinate synthase NadA; Region: PRK09375" /db_xref="CDD:236489" gene 821292..822023 /gene="pnuC" /locus_tag="STM0757" /db_xref="GeneID:1252277" regulatory 821292..821297 /regulatory_class="ribosome_binding_site" /gene="pnuC" /locus_tag="STM0757" /note="putative RBS for pnuC; RegulonDB:STMS1H001063" CDS 821304..822023 /gene="pnuC" /locus_tag="STM0757" /note="PNUC protein. (SW:PNUC_SALTY)" /codon_start=1 /transl_table=11 /product="NMN family, nucleoside/purine/pyrimidine transporter" /protein_id="NP_459737.1" /db_xref="GeneID:1252277" /translation="MDFFSTHNILIHIPIGAGGYDLSWIEAVGTIAGLLCIWLASLEK ISNYFFGLVNVTLFAIIFFQIQLYASLLLQLFFFAANIYGWYAWSRQTKDNQAELKIR WLPLPKAMAWLAICVIAIGLMTRYIDPVFAVLTRVAVAIMQMLGLQVTMPVLQPDAFP FWDSCMMVLSIVAMILMTRKYVENWLLWVIINVISVVIFALQGVYAMSLEYLILTFIA VNGSRLWINSARERGSRALSR" misc_feature 821304..822020 /gene="pnuC" /locus_tag="STM0757" /note="nicotinamide riboside transporter PnuC; Provisional; Region: PRK15397" /db_xref="CDD:185295" gene complement(822020..822971) /gene="ybgR" /locus_tag="STM0758" /db_xref="GeneID:1252278" CDS complement(822020..822958) /gene="ybgR" /locus_tag="STM0758" /note="similar to E. coli putative transport system permease protein (AAC73839.1); Blastp hit to AAC73839.1 (313 aa), 85% identity in aa 1 - 312" /codon_start=1 /transl_table=11 /product="putative CDF family transport protein" /protein_id="NP_459738.1" /db_xref="GeneID:1252278" /translation="MAHSHSHADSHLPKDNNARRLLFAFIVTAGFMLLEVVGGILSGS LALLADAGHMLTDAAALLFALLAVQFSRRPPTVRHTFGWLRLTTLAAFVNAIALVVIT LLIVWEAIERFYTPRPVAGNLMMVIAVAGLLANLFAFWILHRGSDEKNLNVRAAALHV MGDLLGSVGAIVAALIIIWTGWTPADPILSILVSVLVLRSAWRLLKDSVNELLEGAPV SLDINALQRHLSREIPEVRNVHHVHVWMVGEKPVMTLHAQVIPPHDHDALLERIQDFL MHEYHIAHATIQMEYQVCHGPDCHLNQTSSGHVHHH" misc_feature complement(822023..822958) /gene="ybgR" /locus_tag="STM0758" /note="CDF family zinc transporter ZitB; Region: PRK03557" /db_xref="CDD:235130" regulatory complement(822966..822971) /regulatory_class="ribosome_binding_site" /gene="ybgR" /locus_tag="STM0758" /note="putative RBS for ybgR; RegulonDB:STMS1H001064" gene complement(823069..823467) /gene="ybgS" /locus_tag="STM0759" /db_xref="GeneID:1252279" CDS complement(823069..823455) /gene="ybgS" /locus_tag="STM0759" /note="similar to E. coli putative homeobox protein (AAC73840.1); Blastp hit to AAC73840.1 (126 aa), 78% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="putative homeobox protein" /protein_id="NP_459739.1" /db_xref="GeneID:1252279" /translation="MKMTKLTTLLLTATLGLASGAALAAESNAQSSNGQANSAANAGQ VAPDARQNVAPNDVNNNDINTNGNTNSTMQHPDGSTMNHDGMTKDEEHKNTMCKDGRC PDINKKVETGNGVNNDVNTKTDGTTQ" misc_feature complement(823072..823371) /gene="ybgS" /locus_tag="STM0759" /note="YbgS-like protein; Region: YbgS; pfam13985" /db_xref="CDD:464062" regulatory complement(823462..823467) /regulatory_class="ribosome_binding_site" /gene="ybgS" /locus_tag="STM0759" /note="putative RBS for ybgS; RegulonDB:STMS1H001065" gene 823653..824827 /gene="aroG" /locus_tag="STM0760" /db_xref="GeneID:1252280" regulatory 823653..823661 /regulatory_class="minus_35_signal" /gene="aroG" /locus_tag="STM0760" /note="putative -35_signal for aroG; RegulonDB:STMLTH004701" regulatory 823680..823688 /regulatory_class="minus_10_signal" /gene="aroG" /locus_tag="STM0760" /note="putative -10_signal for aroG; RegulonDB:STMLTH004701" protein_bind 823685..823709 /gene="aroG" /locus_tag="STM0760" /note="putative binding site for TyrR, RegulonDB: STMS1H000392" /bound_moiety="TyrR" regulatory 823764..823769 /regulatory_class="ribosome_binding_site" /gene="aroG" /locus_tag="STM0760" /note="putative RBS for aroG; RegulonDB:STMS1H001066" CDS 823775..824827 /gene="aroG" /locus_tag="STM0760" /EC_number="2.5.1.54" /note="similar to E. coli 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine repressible) (AAC73841.1); Blastp hit to AAC73841.1 (350 aa), 94% identity in aa 1 - 350" /codon_start=1 /transl_table=11 /product="3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, phenylalanine repressible)" /protein_id="NP_459740.1" /db_xref="GeneID:1252280" /translation="MNYQNDDLRIKEINELLPPVALLEKFPATENAANTVAHARKAIH KILKGNDDRLLVVIGPCSIHDPAAAKEYAARLLALRDELQGELEIVMRVYFEKPRTTV GWKGLINDPHMDNSFQINDGLRIARKLLLDINDSGLPAAGEFLDMITPQYLADLMSWG AIGARTTESQVHRELASGLSCPVGFKNGTDGTIKVAIDAINAAGAPHCFLSVTKWGHS AIVNTSGNGDCHIILRGGKAPNYSAQHVAEVKEGLTKAGLTPQVMIDFSHANSCKQFQ KQMEVCADVCQQIAGGEKAIIGVMVESHLVEGNQSLESGQPLTYGKSITDACIGWEDT DALLRQLSAAVKARRG" misc_feature 823775..824824 /gene="aroG" /locus_tag="STM0760" /note="3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]; Region: AroG1; COG0722" /db_xref="CDD:440486" gene complement(824921..825473) /locus_tag="STM0761" /db_xref="GeneID:1252281" CDS complement(824921..825466) /locus_tag="STM0761" /EC_number="4.2.1.2" /EC_number="2.5.1.54" /note="similar to E. coli fumarase B= fumarate hydratase Class I; anaerobic isozyme (AAC77083.1); Blastp hit to AAC77083.1 (548 aa), 36% identity in aa 361 - 541" /codon_start=1 /transl_table=11 /product="fumarate hydratase Class I anaerobic" /protein_id="NP_459741.1" /db_xref="GeneID:1252281" /translation="MMELTLPLTKEKAKTLKVGDILFLTGFAYTCRDAAHKKIEVALS NGEKSPVDFQNQTIYYAGPCPARPGLPIGSNGPTTAARMDPFVEMMFQQGATAFLGKG DRADYVAELCKKYGGVSLLGIGGASAINTKHVKSVEIVAYEELGTESIKKLYFDRYRV IVGIDSEGNTLQKQEVPKYAK" misc_feature complement(824924..825463) /locus_tag="STM0761" /note="Tartrate dehydratase beta subunit/Fumarate hydratase class I, C-terminal domain [Energy production and conversion]; Region: FumA; COG1838" /db_xref="CDD:441443" regulatory complement(825468..825473) /regulatory_class="ribosome_binding_site" /locus_tag="STM0761" /note="putative RBS for STM0761; RegulonDB:STMS1H001067" gene complement(825481..826333) /locus_tag="STM0762" /db_xref="GeneID:1252282" CDS complement(825481..826326) /locus_tag="STM0762" /EC_number="4.2.1.2" /EC_number="2.5.1.54" /note="similar to E. coli L-tartrate dehydratase, subunit A (AAC76097.1); Blastp hit to AAC76097.1 (303 aa), 29% identity in aa 29 - 287" /codon_start=1 /transl_table=11 /product="fumarate hydratase, alpha subunit" /protein_id="NP_459742.1" /db_xref="GeneID:1252282" /translation="MSRILNTEIIIPIIEKLVKKACYELDDNLMCSFRKAYDKEESKI GKETIKILIDNGEYAKKEQLACCHDTGTCIVIMEIGQHVCWEGKPLKDQVNQGVRQGY ENGYLRKSMVADPLERINTNDNTPAILHTEIVDGDRVTITVMPKGGGSENMGTFKTLL PGDGIDGIKDFVLETVRRVGGNPCPPYIIGIGVGGTMDHCSWMAKKALLRPLGEFNAK PLYAQLEAELLEAVNNTGIGPLGMGGRITALGVHVDYYPCHITALPVAINFQCNASRH ASEII" misc_feature complement(825484..826323) /locus_tag="STM0762" /note="fumarate hydratase; Provisional; Region: PRK06246" /db_xref="CDD:180486" regulatory complement(826328..826333) /regulatory_class="ribosome_binding_site" /locus_tag="STM0762" /note="putative RBS for STM0762; RegulonDB:STMS1H001068" gene 826495..827346 /locus_tag="STM0763" /db_xref="GeneID:1252283" CDS 826495..827346 /locus_tag="STM0763" /note="similar to E. coli cyn operon positive regulator (AAC73441.1); Blastp hit to AAC73441.1 (299 aa), 25% identity in aa 16 - 288" /codon_start=1 /transl_table=11 /product="transcriptional regulator, lysR family" /protein_id="NP_459743.3" /db_xref="GeneID:1252283" /translation="MLGNLTRVAERHFVSQPNITIAIKKLETELGVTLFDRKKNKLVL TEEGMFFLQKIEPILIALKNSVAEMKDYRNENGGIVTLGIPPMISLFLFSPLFKHFRE IYPEMELSLVEEGTFGLHDKLSAGELDLAIVIINDCPKELVTVPLMTQQHVVCMSDKH PLAKKDSIDWEDLQYEPLILMKKDSWHRKTIIEECTKRGIHTHIFLSSNRVQTNIDLV AKNEGISFILDAVDLKAEKVITKAMTEPTYVTIGLAWKKDKYLSYATRALIKFIEDYI KEHFTIK" misc_feature 826498..827328 /locus_tag="STM0763" /note="DNA-binding transcriptional regulator, LysR family [Transcription]; Region: LysR; COG0583" /db_xref="CDD:440348" gene complement(827347..828330) /locus_tag="STM0764" /db_xref="GeneID:1252284" CDS complement(827347..828330) /locus_tag="STM0764" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC77283.1); Blastp hit to AAC77283.1 (303 aa), 30% identity in aa 9 - 300" /codon_start=1 /transl_table=11 /product="transcriptional regulator, lysR family" /protein_id="NP_459744.1" /db_xref="GeneID:1252284" /translation="MYNATYINETHPMLIRLQLMQYRHHLELTWLEDCLALKETLNFS KASASRYVTQPAFSRRIQSLEEWVGTPLFERSKRGVTLTKAGEVFTDQLPELIHSLYT LKSDTLEAAGNKQPSLVFSATHALSFSFVPHLLKQSDKIAKFGSFRLLSDSLNACEKM MRQGDSQFLLCHHHPHMHLNLNKNNFMSIRLGFDTLIPFSKPDSETLKPLWNINNKIQ FPYLSFSSQSGLGRIIANTASINRITHNINVAFVADLAATLLAMVRSGDGVAWIPQSL ARQDIEAKTIVTAAEKESNLWVPIEIRLYRPAKRMPPDAEELWEIFVEEQI" misc_feature complement(827350..828261) /locus_tag="STM0764" /note="hypochlorite stress DNA-binding transcriptional regulator HypT; Region: PRK10082" /db_xref="CDD:182228" gene 828574..829821 /locus_tag="STM0765" /db_xref="GeneID:1252285" CDS 828574..829821 /locus_tag="STM0765" /note="similar to E. coli putative transport protein (AAC75352.1); Blastp hit to AAC75352.1 (610 aa), 31% identity in aa 9 - 193, 27% identity in aa 413 - 610, 27% identity in aa 425 - 594, 24% identity in aa 6 - 196" /codon_start=1 /transl_table=11 /product="putative cation transporter" /protein_id="NP_459745.1" /db_xref="GeneID:1252285" /translation="MLVLVVAIIIFVSDRLPMGLVAFMVPMALYFTGVIDAKDIFASI VNANVILIVAMCVLGAAFFKTGLAWQSSKILLKYAKTERSLSVLIFLIGGVMSAFVSN SGTVAVLIPIVLGIAASSQIKPIKLLMPLVFGATIGADISIIGSPGNLIAKNTIETFS KGSLSVPFFEYAKIGIPLLIACSIFLYFFGSKLIADRDGNTQSDSQMDYSQIPAWHRN LTLAVFILSIAGMVATDYIKFLPPMHIIACCAAIVLVFAGVLTQKETFNSFETLTVFM LAFMMPLGAALNSTGAGEMIANAVISVTGDSGVMIIMASLWILTWALTQVMSNTAACT LLCPVGWTIAQSIGADPRAVVIAVFIASSVAVCTPMAITANSMIIGPGNVKFKDFLKP GLAISLVCFIVSMILLPIFYPFY" misc_feature 828574..829809 /locus_tag="STM0765" /note="Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is...; Region: SLC13_permease; cd01115" /db_xref="CDD:238535" misc_feature order(828595..828606,828625..828666,828709..828762, 828829..828879,828883..828936,828946..829017, 829087..829131,829231..829269,829291..829335, 829378..829434,829507..829554,829606..829665, 829753..829791) /locus_tag="STM0765" /note="transmembrane helices; other site" /db_xref="CDD:238535" gene 829871..830116 /gene="dcoC" /locus_tag="STM0766" /db_xref="GeneID:1252286" CDS 829871..830116 /gene="dcoC" /locus_tag="STM0766" /EC_number="4.1.1.112" /EC_number="2.5.1.54" /note="sodium ion pump oxaloacetate decarboxylase subunit gamma (gi|321934)" /codon_start=1 /transl_table=11 /product="oxalacetate decarboxylase: gamma chain" /protein_id="NP_459746.1" /db_xref="GeneID:1252286" /translation="MNSSVLLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSAAVNRFFP EPVPVPKAAPAAAPADDFARLKPVIAAAIHHHRRLNP" misc_feature 829871..830113 /gene="dcoC" /locus_tag="STM0766" /note="oxaloacetate decarboxylase subunit gamma; Provisional; Region: PRK02919" /db_xref="CDD:235086" gene 830132..831906 /gene="dcoA" /locus_tag="STM0767" /note="pseudogene; frameshift relative to Klebsiella pneumoniae oxaloacetate decarboxylase alpha chain (OADA) (SW:P13187)" /pseudo /db_xref="GeneID:1252287" gene 831914..833223 /gene="dcoB" /locus_tag="STM0768" /db_xref="GeneID:1252288" regulatory 831914..831919 /regulatory_class="ribosome_binding_site" /gene="dcoB" /locus_tag="STM0768" /note="putative RBS for dcoB; RegulonDB:STMS1H001070" CDS 831922..833223 /gene="dcoB" /locus_tag="STM0768" /EC_number="4.1.1.112" /EC_number="2.5.1.54" /note="oxaloacetate decarboxylase beta chain. (SW:DCOB_SALTY)" /codon_start=1 /transl_table=11 /product="oxalacetate decarboxylase: beta chain" /protein_id="NP_459747.1" /db_xref="GeneID:1252288" /translation="MESLNALLQGMGLMHLGAGQAIMLLVSLLLLWLAIAKKFEPLLL LPIGFGGLLSNIPEAGLALTALESLLAHHDAGQLAVIAAKLHCAPDVHAIKEALALAL PSVQNQMENLAVDMGYTPGVLALFYKVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTL LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLAPEL LGAIAVAAYSYMALVPLIQPPIMKALTTETERKIRMVQLRTVSKREKILFPVVLLLLV ALLLPDAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKF LQPQTLGILLLGVIAFGIGTAAGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSN KVGLESDPQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM" misc_feature 831922..833220 /gene="dcoB" /locus_tag="STM0768" /note="oxaloacetate decarboxylase subunit beta; Provisional; Region: PRK15477" /db_xref="CDD:185374" gene 833335..834040 /locus_tag="STM0769" /db_xref="GeneID:1252289" regulatory 833335..833340 /regulatory_class="ribosome_binding_site" /locus_tag="STM0769" /note="putative RBS for STM0769; RegulonDB:STMS1H001071" CDS 833342..834040 /locus_tag="STM0769" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459748.1" /db_xref="GeneID:1252289" /translation="MNETIAFRPEGRASIKDVVVNYTLASLDELEQLHPALNLLAHPS IVRGSHDFFVRCYDAGVQHAQAGAAETVAVLPDSLPQERQRSGLLCAAAGRLDALRQP LTHNRLCDLASQFCAGMADVDSETRSGFYTVRSISLPVYRRLLRDQHSHGVCLQQALL HLLAWKSDSPWARQQAQRLLWQGGVLGDKGEFALMTLDDELRERQIGWPGLWSLLAVT GFLAKFPAGPIFAD" misc_feature <833600..834010 /locus_tag="STM0769" /note="ATP:dephospho-CoA triphosphoribosyl transferase; Region: CitG; cl00768" /db_xref="CDD:445086" gene 834420..835499 /locus_tag="STM0770" /db_xref="GeneID:1252290" CDS 834420..835499 /locus_tag="STM0770" /note="similar to E. coli ferric enterobactin (enterochelin) transport (AAC73691.1); Blastp hit to AAC73691.1 (334 aa), 37% identity in aa 9 - 332" /codon_start=1 /transl_table=11 /product="putative ABC transport protein" /protein_id="NP_459749.1" /db_xref="GeneID:1252290" /translation="MTCQDKSLLAPALASTPVIPRYRQIIRKRAVLMLAIALAMMASL MVDVTCGSSGLPLSALWQALFQPEKVNAGIHVIVWDIRLPYALMALLVGMALGLAGAE MQTILNNPLATPFTLGVSSAAAFGAALAIVLGIGIPGIPAAWFIPANAFIFALLSALL LDGITRWTGVAASGVVLFGIALVFTFNALVAIMQFVADEDTLQGLVFWTMGSLVRASW EKLGVLAVVFIAVLFCALRSAWQLTALRLGEERAMSFGIHVRRLRLLSLLRISLLSAL AVAFVGPIGFIGLVAPHIARILLGEDHRFYLPGSVLIGGLVLSLASIAAKNSIPGVMV PVGIVTSLVGVPFFLSIVLRHRGSL" misc_feature 834561..835487 /locus_tag="STM0770" /note="ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism]; Region: FepD; COG0609" /db_xref="CDD:440374" gene 835495..836275 /locus_tag="STM0771" /db_xref="GeneID:1252291" regulatory 835495..835500 /regulatory_class="ribosome_binding_site" /locus_tag="STM0771" /note="putative RBS for STM0771; RegulonDB:STMS1H001072" CDS 835499..836275 /locus_tag="STM0771" /note="similar to E. coli ATP-binding component of ferric enterobactin transport (AAC73689.1); Blastp hit to AAC73689.1 (271 aa), 34% identity in aa 8 - 244" /codon_start=1 /transl_table=11 /product="putative ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component" /protein_id="NP_459750.1" /db_xref="GeneID:1252291" /translation="MRGLMLRSFSAGYSTQPVIADLNVPLLPRGKITILLGPNGCGKS TLLRSLAGLNNADGEALLDGEDLMSLSFAERAQKVVFLPQSLPQGVHLHVLESIIVVL RASGGRDNAQGRAQILAILEQLGITHLALQYLDQLSGGQRQLVGLAQSLIRRPELLLL DEPLSALDLNYQFHVMDLVRRDTQAQNRVTIVVAHDINIALRHGDHVLMLKDGRLVAS GAPETVITAERLAEVYRVRGRVERCSQGKLQVVLDGVIAV" misc_feature 835508..836254 /locus_tag="STM0771" /note="ABC-type cobalamin/Fe3+-siderophores transport system, ATPase component [Inorganic ion transport and metabolism, Coenzyme transport and metabolism]; Region: FepC; COG1120" /db_xref="CDD:440737" gene complement(836366..837131) /gene="gpmA" /locus_tag="STM0772" /db_xref="GeneID:1252292" CDS complement(836366..837118) /gene="gpmA" /locus_tag="STM0772" /note="similar to E. coli phosphoglyceromutase 1 (AAC73842.1); Blastp hit to AAC73842.1 (250 aa), 98% identity in aa 1 - 250" /codon_start=1 /transl_table=11 /product="phosphoglyceromutase 1" /protein_id="NP_459751.1" /db_xref="GeneID:1252292" /translation="MAVTKLVLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKL LKEEGFSFDFAYTSVLKRAIHTLWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAE TAEKYGDEQVKQWRRGFAVTPPELTKDDERYPGHDPRYAKLSEKELPLTESLALTIDR VIPYWNDTILPRMKSGERVIIAAHGNSLRALVKYLDNMSEDEILELNIPTGVPLVYEF DENFKPLKHYYLGNADEIAAKAAAVANQGKAK" misc_feature complement(836369..837109) /gene="gpmA" /locus_tag="STM0772" /note="2,3-diphosphoglycerate-dependent phosphoglycerate mutase; Region: gpmA; PRK14115" /db_xref="CDD:184516" misc_feature complement(order(836564..836569,836933..836935, 837086..837091)) /gene="gpmA" /locus_tag="STM0772" /note="catalytic core [active]" /db_xref="CDD:132718" regulatory complement(837126..837131) /regulatory_class="ribosome_binding_site" /gene="gpmA" /locus_tag="STM0772" /note="putative RBS for gpmA; RegulonDB:STMS1H001073" gene complement(837342..838395) /gene="galM" /locus_tag="STM0773" /db_xref="GeneID:1252293" CDS complement(837342..838382) /gene="galM" /locus_tag="STM0773" /EC_number="5.1.3.3" /note="similar to E. coli galactose-1-epimerase (mutarotase) (AAC73843.1); Blastp hit to AAC73843.1 (346 aa), 88% identity in aa 1 - 344" /codon_start=1 /transl_table=11 /product="galactose-1-epimerase (mutarotase)" /protein_id="NP_459752.1" /db_xref="GeneID:1252293" /translation="MLNETPALAPDGQPYRLLTLRNSAGMVVTLMDWGATLLSARIPL SDGSVREALLGCASPEHYPEQTSFLGASIGRYANRIANSRYTFAGETVQLSPSQGENQ LHGGPEGFDKRRWQIVNQNDRQVLFALTSDDGDQGFPGHLCATAQYRLTDDNRISITY RATVDKPCPVNLTNHVYFNLDGDRTDVRQHKLQILADEYLPVDESGIPRQGLKSVANT SFDFRMPKVIASEFLADDDQRKVKGYDHAFLLQTQGDGKKPAARLWSQDGKLQMMVYT TAPALQFYSGNYLAGTPSRGPEPYADWQGLALESELLPDSPNHPEWPQPDCILRPGEE YASLTEYQFIPF" misc_feature complement(837348..838364) /gene="galM" /locus_tag="STM0773" /note="galactose-1-epimerase; Provisional; Region: galM; PRK11055" /db_xref="CDD:182931" misc_feature complement(order(837456..837458,837531..837533, 837648..837650,837852..837854,837858..837860, 838071..838073,838146..838148,838179..838181)) /gene="galM" /locus_tag="STM0773" /note="active site" /db_xref="CDD:185696" misc_feature complement(order(837456..837458,837858..837860)) /gene="galM" /locus_tag="STM0773" /note="catalytic residues [active]" /db_xref="CDD:185696" gene complement(838376..839537) /gene="galK" /locus_tag="STM0774" /db_xref="GeneID:1252294" CDS complement(838376..839524) /gene="galK" /locus_tag="STM0774" /EC_number="2.7.1.6" /note="galactokinase. (SW:GAL1_SALTY)" /codon_start=1 /transl_table=11 /product="galactokinase" /protein_id="NP_459753.1" /db_xref="GeneID:1252294" /translation="MNLKEKTRALFAEIFGYPATHTIQAPGRVNLIGEHTDYNDGFVL PCAIDYQTVISCAPRDDRTVRVIAADYDNQVDEFSLDAPIVTHDSQQWSNYVRGVVKH LQQRNNAFGGVDMVISGNVPQGAGLSSSASLEVAVGTVFQQLYHLPLDGAQIALNGQE AENQFVGCNCGIMDQLISALGKKDHALLIDCRTLGAKAVSMPKGVAVVIINSNFKRTL VGSEYNTRREQCETGARFFQQPALRDVSLEAFNAVASELDPVVAKRVRHVLSENARTV EAASALEKGDLQRMGQLMAESHASMRDDFEITVPQIDTLVDIVKATIGDRGGVRMTGG GFGGCVVALIPEDLVPAVRQAVAQQYEAKTGIKETFYVCKPSQGAGQC" misc_feature complement(838379..839524) /gene="galK" /locus_tag="STM0774" /note="galactokinase; Provisional; Region: PRK05101" /db_xref="CDD:179937" regulatory complement(838390..838395) /regulatory_class="ribosome_binding_site" /gene="galM" /locus_tag="STM0773" /note="putative RBS for galM; RegulonDB:STMS1H001074" gene complement(839527..840585) /gene="galT" /locus_tag="STM0775" /db_xref="GeneID:1252295" CDS complement(839527..840573) /gene="galT" /locus_tag="STM0775" /EC_number="2.7.7.10" /EC_number="2.7.7.12" /note="galactose-1-phosphate uridylyltransferase. (SW:GAL7_SALTY)" /codon_start=1 /transl_table=11 /product="galactose-1-phosphate uridylyltransferase" /protein_id="NP_459754.1" /db_xref="GeneID:1252295" /translation="MTPFNPIDHPHRRYNPLTGQWVLVSPHRAKRPWQGAQETPSQQM LPAHDPDCFLCAGNTRVTGDKNPDYKGTYVFTNDFAALMADTPDAPDSHDPLMRCQSA RGTSRVICFSPDHSKTLPELSLPALTEIVRTWQTQTAELGKTYPWVQVFENKGAAMGC SNPHPHGQVWANSFLPNEAEREDRLQKAYFAEQRSPMLVDYVQRELADGSRTVVETEH WLAVVPYWAAWPFETLLLPKTHVLRITDLSDEQRDSLALALKKLTSRYDNLFQCSFPY SMGWHGAPFNGEENAHWQLHAHFYPPLLRSATVRKFMVGYEMLAETQRDLTAEQAAER LRAVSDIHFRESGV" misc_feature complement(839536..840573) /gene="galT" /locus_tag="STM0775" /note="UDP-glucose--hexose-1-phosphate uridylyltransferase; Region: PRK11720" /db_xref="CDD:236963" regulatory complement(839532..839537) /regulatory_class="ribosome_binding_site" /gene="galT" /locus_tag="STM0775" /note="putative RBS for galK; RegulonDB:STMS1H001075" regulatory complement(840580..840585) /regulatory_class="ribosome_binding_site" /gene="galT" /locus_tag="STM0775" /note="putative RBS for galT; RegulonDB:STMS1H001076" gene complement(840584..841667) /gene="galE" /locus_tag="STM0776" /db_xref="GeneID:1252296" CDS complement(840584..841600) /gene="galE" /locus_tag="STM0776" /EC_number="5.1.3.2" /note="UDP-glucose 4-epimerase. (SW:GALE_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-galactose 4-epimerase" /protein_id="NP_459755.1" /db_xref="GeneID:1252296" /translation="MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKRSVLPVI ERLGGKHPTFVEGDIRNEALITEILHDHAIDTVIHFAGLKAVGESVARPLEYYDNNVN GTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQIL TDLQKAQPEWSIALLRYFNPVGAHPSGDMGEDPQGIPNNLMPYIAQVAVGRRESLAVF GNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLADKSGVHIYNLGAGVGSSVLDVVNAF SKACGKPINYHFAPRRDGDLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ GYPD" misc_feature complement(840587..841600) /gene="galE" /locus_tag="STM0776" /note="UDP-galactose-4-epimerase; Provisional; Region: PRK10675" /db_xref="CDD:182639" misc_feature complement(order(841061..841063,841067..841072, 841142..841144,841154..841156,841229..841237, 841304..841306,841349..841351,841355..841363, 841424..841432,841493..841510,841565..841576, 841580..841582)) /gene="galE" /locus_tag="STM0776" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187558" misc_feature complement(order(841112..841120,841124..841129, 841136..841138,841148..841150,841157..841159, 841265..841267,841274..841279,841283..841288, 841295..841300,841307..841312,841319..841327, 841331..841333)) /gene="galE" /locus_tag="STM0776" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187558" misc_feature complement(order(841142..841144,841154..841156, 841229..841231,841301..841303)) /gene="galE" /locus_tag="STM0776" /note="active site" /db_xref="CDD:187558" misc_feature complement(order(840716..840718,840725..840727, 840794..840796,840902..840904,840908..840910, 840914..840916,840947..840958,841001..841009, 841064..841072,841154..841156,841223..841231)) /gene="galE" /locus_tag="STM0776" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187558" protein_bind complement(841585..841603) /gene="galE" /locus_tag="STM0776" /note="putative binding site for GalR, RegulonDB: STMS1H000195" /bound_moiety="GalR" regulatory complement(841607..841612) /regulatory_class="ribosome_binding_site" /gene="galE" /locus_tag="STM0776" /note="putative RBS for galE; RegulonDB:STMS1H001077" regulatory complement(841640..841648) /regulatory_class="minus_10_signal" /gene="galE" /locus_tag="STM0776" /note="putative -10_signal for galE; RegulonDB:STMLTH004702" protein_bind complement(841655..841675) /note="putative binding site for CRP, RegulonDB: STMS1H000085" /bound_moiety="CRP" regulatory complement(841659..841667) /regulatory_class="minus_35_signal" /gene="galE" /locus_tag="STM0776" /note="putative -35_signal for galE; RegulonDB:STMLTH004702" protein_bind complement(841759..841777) /note="putative binding site for GalR, RegulonDB: STMS1H000194" /bound_moiety="GalR" gene complement(841823..842736) /locus_tag="STM0777" /db_xref="GeneID:1252297" CDS complement(841823..842731) /locus_tag="STM0777" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459756.1" /db_xref="GeneID:1252297" /translation="MAFRFPQIILFLLAAILFCPSSYAEQKPTAAQEARKTAVEVAVE DMSRAAVAGPTKISLGDKATLNLPEGFTWIPAKEAAVFMREIGNYVDDEYFYGLVFKK EMNGFISIEYDDSGYVKDDDAKNWDADELMDNLRKGTKEANKDRIAKGIEPIEIIGWI EKPTYDATNHRLIWSAAIQDIGTNEPLNEQGVNYNTYLLGREGYFSLNLVTDRGSVDH EIPLAKRILSSVKFNAGQRYADFNESTDKIAEYGLAALIGGIAAKKVGLLAMLGIALL KFWKVTAIGVVAVGALARKLLSRKKD" misc_feature complement(841826..842710) /locus_tag="STM0777" /note="Uncharacterized membrane-anchored protein [Function unknown]; Region: COG4714" /db_xref="CDD:443749" regulatory complement(842731..842736) /regulatory_class="ribosome_binding_site" /locus_tag="STM0777" /note="putative RBS for STM0777; RegulonDB:STMS1H001078" gene complement(842902..844389) /gene="modF" /locus_tag="STM0778" /db_xref="GeneID:1252298" CDS complement(842902..844377) /gene="modF" /locus_tag="STM0778" /note="similar to E. coli ATP-binding component of molybdate transport system (AAC73847.1); Blastp hit to AAC73847.1 (490 aa), 31% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="putative ABC superfamily (atp_bind), molybdenum transporter" /protein_id="NP_459757.1" /db_xref="GeneID:1252298" /translation="MSSLQISQGTFRLSDTKTLHLDSLTLNAGDSWAFVGANGSGKSA LARALAGELPLLTGERQCRFTRITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTT AEIIQDDVHHPARCAILAQQFGISALLDRRFKYLSTGETRKALLCQALMSEPELLILD EPFDGLDVTARQQLAQRLTALNQAGMTLALVLNRFDEIPDFVQFAGVLADCTLAETGT TAELLQRALVAQLAHSERLTDVQLPEPDEPSARHALPDGEPRIVLNDGVVSYNDRPIL HHLSWRVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDI KKHIGYVSSSLHLDYRVSTTVRNVILSGYFDSIGIYQAVSDRQRKLAQQWLDILGIDK RTADAPFHSLSWGQQRLALIVRALVKHPTVLILDEPLQGLDPLNRQLVRRFVDVLIRQ GETQLLFVSHHAEDAPACITHRLEFVPEGERYKYVSGRCNN" misc_feature complement(842908..844377) /gene="modF" /locus_tag="STM0778" /note="putative molybdenum transport ATP-binding protein ModF; Provisional; Region: PRK10938" /db_xref="CDD:182852" regulatory complement(844384..844389) /regulatory_class="ribosome_binding_site" /gene="modF" /locus_tag="STM0778" /note="putative RBS for modF; RegulonDB:STMS1H001079" gene complement(844445..845245) /gene="modE" /locus_tag="STM0779" /db_xref="GeneID:1252299" CDS complement(844445..845233) /gene="modE" /locus_tag="STM0779" /note="similar to E. coli molybdate uptake regulatory protein (AAC73848.1); Blastp hit to AAC73848.1 (262 aa), 89% identity in aa 1 - 262" /codon_start=1 /transl_table=11 /product="transcriptional repressor of modABCD operon (molybdate uptake)" /protein_id="NP_459758.1" /db_xref="GeneID:1252299" /translation="MQAEILLTLKLQQKLFADPRRISLLKHIALSGSISQGAKDAGIS YKSAWDAINDMNQLSEHMLVERATGGKGGGGAVLTRYGQRLIQLYDLLGQIQQKAFDV LSDDDALPLDSLLAAISRFSLQTSARNQWFGTITARDRDLVQQHVDVLLADGKTRLKV ALTAQSGERLGLEEGKEVLILLKAPWVGITRDAAVARAADNQLSGTISHIERGAEQCE VLMALPDGQTLCATIPTSDAATLKEGDDVIAWFNADRVIIATLC" misc_feature complement(844448..845233) /gene="modE" /locus_tag="STM0779" /note="DNA-binding transcriptional regulator ModE; Provisional; Region: PRK10676" /db_xref="CDD:182640" regulatory complement(845240..845245) /regulatory_class="ribosome_binding_site" /gene="modE" /locus_tag="STM0779" /note="putative RBS for modE; RegulonDB:STMS1H001080" gene 845350..845511 /locus_tag="STM0780" /db_xref="GeneID:1252300" regulatory 845350..845355 /regulatory_class="ribosome_binding_site" /locus_tag="STM0780" /note="putative RBS for STM0780; RegulonDB:STMS1H001081" CDS 845362..845511 /locus_tag="STM0780" /note="similar to E. coli orf, hypothetical protein (AAC73849.1); Blastp hit to AAC73849.1 (49 aa), 91% identity in aa 1 - 48" /codon_start=1 /transl_table=11 /product="putative outer membrane or exported" /protein_id="NP_459759.1" /db_xref="GeneID:1252300" /translation="MLELLKSLVFAVIMVPVVMAIILGLIYGLGEVFNIFSGIGQKDQ SRQNR" misc_feature 845362..845505 /locus_tag="STM0780" /note="Multidrug efflux pump-associated protein AcrZ; Region: AcrZ; pfam10766" /db_xref="CDD:431482" gene 845608..846451 /gene="modA" /locus_tag="STM0781" /db_xref="GeneID:1252301" regulatory 845608..845616 /regulatory_class="minus_35_signal" /gene="modA" /locus_tag="STM0781" /note="putative -35_signal for modA; RegulonDB:STMLTH004703" regulatory 845635..845643 /regulatory_class="minus_10_signal" /gene="modA" /locus_tag="STM0781" /note="putative -10_signal for modA; RegulonDB:STMLTH004703" regulatory 845666..845671 /regulatory_class="ribosome_binding_site" /gene="modA" /locus_tag="STM0781" /note="putative RBS for modA; RegulonDB:STMS1H001082" CDS 845678..846451 /gene="modA" /locus_tag="STM0781" /note="ABC superfamily (peri_perm); similar to E. coli molybdate-binding periplasmic protein; permease (AAC73850.1); Blastp hit to AAC73850.1 (257 aa), 86% identity in aa 1 - 257" /codon_start=1 /transl_table=11 /product="molybdate transporter" /protein_id="NP_459760.1" /db_xref="GeneID:1252301" /translation="MAHSWLRLVAGATLSFVIAGHALADEGKITVFAAASLTNAMQDI AAEYKKEKNVDVVSSFASSSTLARQIEAGAPADLFISADQKWMDYAADKKAVDTTTRE TLLGNSLVVVAPKASEQKPFTIDNKTDWIRLLNGGRLAVGDPQHVPAGIYAKEALQKL GAWQTLEPKLAPGEDVRGALALVERNEAPLGIVYGSDAVASKGVNVVATFPEDSHKKV EYPIAIVEGHKNATVSAFYDYLKGPQASAIFKRYGFTTK" misc_feature 845678..846448 /gene="modA" /locus_tag="STM0781" /note="molybdate transporter periplasmic protein; Provisional; Region: modA; PRK10677" /db_xref="CDD:182641" misc_feature order(845777..845782,845864..845866,845921..845923, 846119..846124,846200..846205,846257..846259) /gene="modA" /locus_tag="STM0781" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270254" gene 846432..847140 /gene="modB" /locus_tag="STM0782" /db_xref="GeneID:1252302" regulatory 846432..846437 /regulatory_class="ribosome_binding_site" /gene="modB" /locus_tag="STM0782" /note="putative RBS for modB; RegulonDB:STMS1H001083" CDS 846451..847140 /gene="modB" /locus_tag="STM0782" /note="ABC superfamily (membrane); similar to E. coli molybdate transport permease protein (AAC73851.1); Blastp hit to AAC73851.1 (229 aa), 95% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="molybdate transporter" /protein_id="NP_459761.1" /db_xref="GeneID:1252302" /translation="MILTDPEWQAVLLSLKVSSLAVLFSLPFGIFFAWLLVRCRFPGK ALLDSVLHLPLVLPPVVVGYLLLVSMGRRGFIGQWLYDWFGLTFAFSWRGAVLAAAVM SFPLMVRAIRLALEGVDIKLEQAARTLGAGRWRVFLTITLPLTLPGIIVGTVLAFARS LGEFGATITFVSNIPGETRTIPSAMYTLIQTPGGESAAARLCVISIVLALISLLISEW LARISRERTGR" misc_feature 846451..847134 /gene="modB" /locus_tag="STM0782" /note="molybdate ABC transporter permease subunit; Region: modB; PRK09421" /db_xref="CDD:181841" misc_feature order(846529..846534,846541..846546,846559..846561, 846589..846600,846604..846633,846640..846645, 846649..846651,846751..846756,846760..846762, 846766..846768,846775..846780,846784..846786, 846796..846801,846808..846810,846859..846861, 846901..846906,846913..846915,846934..846945, 846952..846957,847006..847011,847039..847044, 847051..847056,847060..847065,847072..847077, 847084..847089) /gene="modB" /locus_tag="STM0782" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(846607..846651,846934..846951) /gene="modB" /locus_tag="STM0782" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(846649..846651,846736..846738,846952..846954, 847000..847002,847009..847011,847039..847041) /gene="modB" /locus_tag="STM0782" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(846811..846849,846865..846870,846880..846882) /gene="modB" /locus_tag="STM0782" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 847129..848201 /gene="modC" /locus_tag="STM0783" /db_xref="GeneID:1252303" regulatory 847129..847134 /regulatory_class="ribosome_binding_site" /gene="modB" /locus_tag="STM0782" /note="putative RBS for modC; RegulonDB:STMS1H001084" CDS 847143..848201 /gene="modC" /locus_tag="STM0783" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of molybdate transport (AAC73852.1); Blastp hit to AAC73852.1 (352 aa), 91% identity in aa 1 - 352" /codon_start=1 /transl_table=11 /product="molybdate transporter" /protein_id="NP_459762.1" /db_xref="GeneID:1252303" /translation="MLELNFSQTLGTHCLTLNETLPASGITAIFGVSGAGKTSLINAI SGLTRPQKGRIALNGRVLHDAENGICLTPEKRRIGYVFQDARLFPHYKVRGNLRYGMA KSMTGQFDKLVSLLGIEALLDRLPGSLSGGEKQRVAIGRALLTAPELLLLDEPLASLD IPRKRELLPYLQRLAREINIPMLYVSHSLDEILHLADKVMVLEDGQVKAFGPLEEVWG SSVMHPWLPKEQQSSILKVSVLEHHPHYAMTALALGDQHLWVNKLNQPLQSTLRIRIQ ASDVSLVLQPPQQTSIRNVLRAKVANCYDDNGQVEVQLEIGGRTLWARISPWARDELN IKPGLWLYAQVKSVSITA" misc_feature 847143..848198 /gene="modC" /locus_tag="STM0783" /note="molybdenum ABC transporter ATP-binding protein ModC; Region: modC; PRK11144" /db_xref="CDD:182993" gene complement(848202..849032) /gene="ybhA" /locus_tag="STM0784" /db_xref="GeneID:1252304" CDS complement(848202..849020) /gene="ybhA" /locus_tag="STM0784" /note="similar to E. coli putative phosphatase (AAC73853.1); Blastp hit to AAC73853.1 (272 aa), 84% identity in aa 1 - 272" /codon_start=1 /transl_table=11 /product="putative hydrolase of the HAD superfamily" /protein_id="NP_459763.1" /db_xref="GeneID:1252304" /translation="MTARVIALDLDGTLLTPHKTLLPSSLEALSRAKEAGFQLIIVTG RHHVAIHPFYQALALETPAICCNGTYLYDYQAKTVLDADPMPVDKALQLIDLLDEHQI HGLMYVDDAMLYEHPTGHVVRTSRWAQTLPPEQRPTFTQVSSLAQAARDVNAVWKFAL TDEDIPRLQRFGQHVEQALGLECEWSWHDQVDIARKGNSKGKRLTQWIEAQGGSMKNV IAFGDNYNDISMLEAAGTGVAMGNADEAVKARADVVIGDNTTDSIAKFIYTHLL" misc_feature complement(848205..849020) /gene="ybhA" /locus_tag="STM0784" /note="pyridoxal phosphate (PLP) phosphatase; Provisional; Region: PRK10530" /db_xref="CDD:182523" regulatory complement(849027..849032) /regulatory_class="ribosome_binding_site" /gene="ybhA" /locus_tag="STM0784" /note="putative RBS for ybhA; RegulonDB:STMS1H001085" gene 849173..850179 /gene="ybhE" /locus_tag="STM0785" /db_xref="GeneID:1252305" regulatory 849173..849178 /regulatory_class="ribosome_binding_site" /gene="ybhE" /locus_tag="STM0785" /note="putative RBS for ybhE; RegulonDB:STMS1H001086" CDS 849184..850179 /gene="ybhE" /locus_tag="STM0785" /note="similar to E. coli putative isomerase (AAC73854.1); Blastp hit to AAC73854.1 (331 aa), 91% identity in aa 1 - 331" /codon_start=1 /transl_table=11 /product="putative 3-carboxymuconate cyclase" /protein_id="NP_459764.1" /db_xref="GeneID:1252305" /translation="MKQTVYTASPESQQIHVWSLNHEGTLTLVQVVDVPGQVQPMVVS PDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSPTHISTDHHGRFVFVGSYN AGNVSVTRLQDGLPVELVDVVEGLDGCHSANITPDNRTLWVPALKQDRICLFTLSDDG HLVAQEPAEVNTVEGAGPRHMVFHPNRQYAYCVNELNSSVDVWQLKNPHGEIECVQTL DMMPADFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSVEGFQPTEAQ PRGFNIDNSGKYLIAAGQKSHHIAVYEITGTQGLLTEKGRYAVGQGPMWVVVNAY" misc_feature 849187..850176 /gene="ybhE" /locus_tag="STM0785" /note="6-phosphogluconolactonase; Provisional; Region: PRK11028" /db_xref="CDD:182912" gene complement(850323..851618) /gene="ybhC" /locus_tag="STM0786" /db_xref="GeneID:1252306" CDS complement(850323..851606) /gene="ybhC" /locus_tag="STM0786" /note="similar to E. coli putative pectinesterase (AAC73859.1); Blastp hit to AAC73859.1 (427 aa), 86% identity in aa 1 - 427" /codon_start=1 /transl_table=11 /product="putative pectinesterase" /protein_id="NP_459765.1" /db_xref="GeneID:1252306" /translation="MNTLSVSRLALALAFGVTLSACSSTPPDQIPSDQTAPGTASRPI LSANEAKNFVAARYFASLTPNTAPWSPSPITLPAQPDFVVGPAGTPGVTHTSIQAAVD AAMVKRTNKRQYIAIMPGDYQGTVYVPAAPGSLTLYGTGEKPIDVKIGMAIDGEMSVA DWRRAVNPGGKYMPGKPAWYMFDNCQSKHAATIGVMCSAAFWSQNNGLQLQNLTIENT LGDSVDAGNHPAVALRTDGDKVQINKVNILGRQNTFFVTNSGVQNRLQTDRQPRTLVT NSYIEGDVDMVSGRGAVVFDNTNFQVVNSRTQQEAYVFAPATLSNIYYGFLAINSRFN ASGDGVAQLGRSLDVDANTNGQVVIRDSVINEGFNVAKPWADAVISKRPFAGNTGTVD DKDEVQRNLNDTNYNRMWEYNNRGIGSKVVAEPKQ" misc_feature complement(850347..851606) /gene="ybhC" /locus_tag="STM0786" /note="putative acyl-CoA thioester hydrolase; Region: PRK10531" /db_xref="CDD:236709" regulatory complement(851613..851618) /regulatory_class="ribosome_binding_site" /gene="ybhC" /locus_tag="STM0786" /note="putative RBS for ybhC; RegulonDB:STMS1H001087" gene 851838..853067 /gene="hutI" /locus_tag="STM0787" /db_xref="GeneID:1252307" regulatory 851838..851843 /regulatory_class="ribosome_binding_site" /gene="hutI" /locus_tag="STM0787" /note="putative RBS for hutI; RegulonDB:STMS1H001088" CDS 851844..853067 /gene="hutI" /locus_tag="STM0787" /EC_number="3.5.2.7" /codon_start=1 /transl_table=11 /product="Imidazolonepropionase" /protein_id="NP_459766.1" /db_xref="GeneID:1252307" /translation="MRQLLPGDTVWRNIRLATMDPQQQALYGLVDNQALIVREGHICD IVPETQLPVSGDNIHDMQGRLVTPGLIDCHTHLVFAGNRAAEWEQRLNGASYQHISAQ GGGINATVSATRACAEETLYLLARERMMRLASEGVTLLEIKSGYGLELATEEKLLRVA AKLAAENAIDISPTLLAAHATPAEYRDDPDGYITLVCETMIPQLWQKGLFDAVDLFCE SVGFNVAQSERVLQTAKALGIPVKGHVEQLSLLGGAQLVSRYQGLSADHIEYLDEVGV AAMRDGGTVGVLLPGAFYFLRETQRPPVELLRRYQVPVAVASDFNPGTSPFCSLHLAM NMACVQFGLTPEEAWAGVTRHAARALGRQATHGQIRAGYRADFVVWDAEQPVEIVYEP GRNPLYQRVYRGKIS" misc_feature 851946..853055 /gene="hutI" /locus_tag="STM0787" /note="Imidazolonepropionase/imidazolone-5-propionate hydrolase (Imidazolone-5PH) catalyzes the third step in the histidine degradation pathway, the hydrolysis of (S)-3-(5-oxo-4,5-dihydro-3H-imidazol-4-yl)propanoate to N-formimidoyl-L-glutamate. In bacteria; Region: Imidazolone-5PH; cd01296" /db_xref="CDD:238621" misc_feature order(852063..852065,852069..852071,852573..852575, 852582..852584,852642..852644,852798..852800) /gene="hutI" /locus_tag="STM0787" /note="active site" /db_xref="CDD:238621" gene 853057..854005 /gene="hutG" /locus_tag="STM0788" /db_xref="GeneID:1252308" regulatory 853057..853062 /regulatory_class="ribosome_binding_site" /gene="hutG" /locus_tag="STM0788" /note="putative RBS for hutG; RegulonDB:STMS1H001089" CDS 853064..854005 /gene="hutG" /locus_tag="STM0788" /note="similar to E. coli agmatinase (AAC75974.1); Blastp hit to AAC75974.1 (306 aa), 24% identity in aa 47 - 298" /codon_start=1 /transl_table=11 /product="formimionoglutamate hydrolase" /protein_id="NP_459767.1" /db_xref="GeneID:1252308" /translation="MTQWYPASPALWQGRDDSIEAPDARRLFQTVTRSETFSPENWQQ KIALMGFACDEGVKRNAGRPGAAGAPDALRKALANMASHQGHERLVDLGNWVAPTPDL EGAQQALRDAVSRCLRAGMRTLVLGGGHETAFGHGAGVLDAFAQESVGIINLDAHLDL RQTDRATSGTPFRQLAQLCDAQSRAFHYACFGVSRAANTQALWREAQWRNVTVVEDLD CHDALAQMAQFIDKVDKIYLTIDLDVLPVWEMPAVSAPAALGVPLIQVLRLIEPVCRS GKLQAADLVEFNPRFDEDGAAARVAARLGWQIAHWWR" misc_feature 853202..853987 /gene="hutG" /locus_tag="STM0788" /note="Formimidoylglutamase or HutE; Region: Formimidoylglutamase; cd09988" /db_xref="CDD:212514" misc_feature order(853451..853453,853526..853528,853532..853540, 853565..853570,853784..853786,853790..853792, 853919..853921) /gene="hutG" /locus_tag="STM0788" /note="putative active site [active]" /db_xref="CDD:212514" gene 854043..854775 /gene="hutC" /locus_tag="STM0789" /db_xref="GeneID:1252309" regulatory 854043..854048 /regulatory_class="ribosome_binding_site" /gene="hutC" /locus_tag="STM0789" /note="putative RBS for hutC; RegulonDB:STMS1H001090" CDS 854050..854775 /gene="hutC" /locus_tag="STM0789" /note="similar to E. coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); Blastp hit to AAC73824.1 (240 aa), 24% identity in aa 5 - 229" /codon_start=1 /transl_table=11 /product="histidine utilization repressor" /protein_id="NP_459768.1" /db_xref="GeneID:1252309" /translation="MYSSRSRSAPAPFYETVKQDICKKIAGGVWQPHDRIPSEAELVA QYGFSRMTINRALRELTDEGWLVRLQGVGTFVAEPKGQSALFEVRSIAEEIAARRHQH RCEVLTLERVRANAIQASALNVNESDVIFHSIMVHYENDLPVQIEDRCVNADIAVDYL TQDYSQTTPHAYLSRIAPLTEGEHIVEAVRATAQECAWLTIKEHEPCLLIRRTTWSAS RIVSHARLLFPGSRYRLQGRFIS" misc_feature 854050..854772 /gene="hutC" /locus_tag="STM0789" /note="histidine utilization repressor; Provisional; Region: PRK14999" /db_xref="CDD:184961" gene 854972..856656 /gene="hutU" /locus_tag="STM0790" /note="pseudogene; frameshift relative to Pseudomonas putida urocanate hydratase (HUTU) (SW:P25080)" /pseudo /db_xref="GeneID:1252310" gene 856651..858178 /gene="hutH" /locus_tag="STM0791" /db_xref="GeneID:1252311" regulatory 856651..856656 /regulatory_class="ribosome_binding_site" /gene="hutH" /locus_tag="STM0791" /note="putative RBS for hutH; RegulonDB:STMS1H001092" CDS 856658..858178 /gene="hutH" /locus_tag="STM0791" /EC_number="4.3.1.3" /codon_start=1 /transl_table=11 /product="histidine ammonia lyase" /protein_id="NP_459769.1" /db_xref="GeneID:1252311" /translation="MNTMTLTPGQLSLSQLYDIWRHPVQLRLDASAIDGINASVACVN DIVAEGRTAYGINTGFGLLAQTRIADEDLQNLQRSLVLSHAAGVGDPLDDAMVRLIMV LKINSLARGFSGIRLSVIEALIALVNAGVYPLIPAKGSVGASGDLAPLAHLSLTLLGE GKARWQGEWLPAQTALKKAGLEPVALAAKEGLALLNGTQASTAFALRGLFEAQELFAS AVVCGALTTEAVLGSRRPFDARIHAARGQQGQIDVARLFRHLLTDTSAIAESHHHCHK VQDPYSLRCQPQVMGACLTQLRQTKEVLLAEANAVSDNPLVFADAGEVISGGNFHAEP VAMAADNLALAIAEIGALSERRIALMMDKHMSQLPPFLVKNGGVNSGFMIAQVTAAAL ASENKALAHPHSVDSLPTSANQEDHVSMAPAAGRRLWEMAANTRGIIAVEWLAACQGI DLREGLTSSPLLEQARQTLREQVAHYTQDRFFAPDIECATALLAQGALQRLVPDFM" misc_feature 856658..858163 /gene="hutH" /locus_tag="STM0791" /note="histidine ammonia-lyase; Provisional; Region: PRK09367" /db_xref="CDD:236484" misc_feature order(856817..856825,856829..856831,856835..856837, 856886..856888,856895..856897,857219..857233, 857243..857245,857498..857500,857507..857509, 857597..857599,857633..857635) /gene="hutH" /locus_tag="STM0791" /note="active sites [active]" /db_xref="CDD:176460" misc_feature order(856832..856837,856892..856894,856901..856924, 856985..856987,857069..857074,857111..857113, 857120..857122,857375..857380,857387..857392, 857396..857398,857405..857407,857489..857491, 857495..857503,857507..857512,857519..857524, 857540..857545,857552..857554,857561..857566, 857573..857578,857585..857590,857603..857611, 857624..857626,857630..857650,857654..857659, 857666..857668,857678..857680,857699..857701, 857708..857710,857720..857722,857732..857734, 857741..857743,857750..857752,857786..857791, 857795..857800,857804..857815,857819..857821, 857825..857842,857846..857857,857888..857908, 857915..857917,857933..857938,857945..857947, 857954..857959) /gene="hutH" /locus_tag="STM0791" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176460" gene complement(858263..858750) /gene="ybhB" /locus_tag="STM0792" /db_xref="GeneID:1252312" CDS complement(858263..858739) /gene="ybhB" /locus_tag="STM0792" /note="similar to E. coli orf, hypothetical protein (AAC73860.1); Blastp hit to AAC73860.1 (158 aa), 93% identity in aa 1 - 158" /codon_start=1 /transl_table=11 /product="putative phospholipid-binding protein" /protein_id="NP_459770.1" /db_xref="GeneID:1252312" /translation="MKLISNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDNVPMGTK SFVVTCYDPDAPTGSGWWHWVVVNLPADTRVLTQGFGSGLVAVPDGVIQTRTDFGKAG YGGAAPPKGETHRYIFTVHALDVERLDVDEDASGAMVGFNVHFHSLASASITAMFS" misc_feature complement(858266..858739) /gene="ybhB" /locus_tag="STM0792" /note="putative kinase inhibitor protein; Provisional; Region: PRK10257" /db_xref="CDD:182339" misc_feature complement(order(858392..858394,858398..858400, 858404..858406,858413..858427,858551..858553, 858557..858559,858581..858586)) /gene="ybhB" /locus_tag="STM0792" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176643" regulatory complement(858745..858750) /regulatory_class="ribosome_binding_site" /gene="ybhB" /locus_tag="STM0792" /note="putative RBS for ybhB; RegulonDB:STMS1H001093" gene complement(858797..860137) /gene="bioA" /locus_tag="STM0793" /db_xref="GeneID:1252313" CDS complement(858797..860086) /gene="bioA" /locus_tag="STM0793" /EC_number="2.6.1.62" /note="similar to E. coli 7,8-diaminopelargonic acid synthetase (AAC73861.1); Blastp hit to AAC73861.1 (429 aa), 86% identity in aa 1 - 427" /codon_start=1 /transl_table=11 /product="7,8-diaminopelargonic acid synthetase" /protein_id="NP_459771.1" /db_xref="GeneID:1252313" /translation="MTTDDLAFDKRHIWHPYTSMTSPLPVYPVERAEGCELVLASGKR LIEGMSSWWAAIHGYNHPQLNAAMKAQIDAMSHVMFGGITHQPAVNLCRKLVAITPEP LECVFLADSGSVSVEVAMKMALQYWQARGESRQRFLTFRHGYHGDTFGAMSVCDPDNS MHSLWKGYLPENLFAPAPQSRMDGEWDESDIAPFARLMAAHRHEIAAVILEPIVQGAG GMRIYHPQWLRRIRNMCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILCLGKAL TGGTMTLSATLTTRQVAETISNGEAGCFMHGPTFMGNPLACAVACANLTLLESGEWRQ QVASIESQLRAELAPAQSSPWVADVRVLGAIGVVETTHPVNMAALQRFFVGQGVWIRP FGKLIYLMPPYIIRPDQLRRLTQAVNDAVHNETFFSH" misc_feature complement(858803..860086) /gene="bioA" /locus_tag="STM0793" /note="adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated; Region: PRK07986" /db_xref="CDD:181189" misc_feature complement(order(859265..859267,859343..859348, 859352..859354,859454..859456,859646..859648, 859652..859657,859748..859756)) /gene="bioA" /locus_tag="STM0793" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99735" misc_feature complement(order(859265..859267,859343..859345, 859352..859354,859454..859456,859652..859657, 859748..859753)) /gene="bioA" /locus_tag="STM0793" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature complement(859265..859267) /gene="bioA" /locus_tag="STM0793" /note="catalytic residue [active]" /db_xref="CDD:99735" protein_bind 860093..860133 /note="putative binding site for BirA, RegulonDB: STMS1H000036" /bound_moiety="BirA" regulatory complement(860099..860104) /regulatory_class="ribosome_binding_site" /gene="bioA" /locus_tag="STM0793" /note="putative RBS for bioA; RegulonDB:STMS1H001094" regulatory complement(860110..860118) /regulatory_class="minus_10_signal" /gene="bioA" /locus_tag="STM0793" /note="putative -10_signal for bioA; RegulonDB:STMLTH004704" gene 860127..861213 /gene="bioB" /locus_tag="STM0794" /db_xref="GeneID:1252314" regulatory 860127..860135 /regulatory_class="minus_35_signal" /gene="bioB" /locus_tag="STM0794" /note="putative -35_signal for bioB; RegulonDB:STMLTH004705" regulatory complement(860129..860137) /regulatory_class="minus_35_signal" /gene="bioA" /locus_tag="STM0793" /note="putative -35_signal for bioA; RegulonDB:STMLTH004704" protein_bind complement(860131..860143) /note="putative binding site for BirA, RegulonDB: STMS1H000035" /bound_moiety="BirA" regulatory 860154..860162 /regulatory_class="minus_10_signal" /gene="bioB" /locus_tag="STM0794" /note="putative -10_signal for bioB; RegulonDB:STMLTH004705" regulatory 860160..860165 /regulatory_class="ribosome_binding_site" /gene="bioB" /locus_tag="STM0794" /note="putative RBS for bioB; RegulonDB:STMS1H001095" CDS 860173..861213 /gene="bioB" /locus_tag="STM0794" /EC_number="2.8.1.6" /note="similar to E. coli biotin synthesis, sulfur insertion? (AAC73862.1); Blastp hit to AAC73862.1 (346 aa), 94% identity in aa 1 - 346" /codon_start=1 /transl_table=11 /product="biotin synthetase" /protein_id="NP_459772.1" /db_xref="GeneID:1252314" /translation="MARHPRWTLSQVTELFEKPLLELLFEAQQIHRQHFDPQQVQVST LLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLDSARKAKNAGSTRFCMGAAW RNPHERDMPYLEKIVQGVKAMGLETCMTLGMLNESQAQRLANAGLDYYNHNLDTSPEF YGNIITTRTYQERLDTLEKVREAGIKVCSGGIVGLGETVTDRAGLLLQLANLPTPPES VPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMC FMAGANSIFYGCKLLTTPNPAEDKDLQLFRKLGLNPQQTRVLAGDNEQQQRLEQTLMT PDTDDYYNAAAL" misc_feature 860188..861108 /gene="bioB" /locus_tag="STM0794" /note="Biotin synthase or related enzyme [Coenzyme transport and metabolism]; Region: BioB; COG0502" /db_xref="CDD:440268" gene 861199..862367 /gene="bioF" /locus_tag="STM0795" /db_xref="GeneID:1252315" regulatory 861199..861204 /regulatory_class="ribosome_binding_site" /gene="bioB" /locus_tag="STM0794" /note="putative RBS for bioF; RegulonDB:STMS1H001096" CDS 861210..862367 /gene="bioF" /locus_tag="STM0795" /EC_number="2.3.1.47" /note="similar to E. coli 8-amino-7-oxononanoate synthase (AAC73863.1); Blastp hit to AAC73863.1 (384 aa), 80% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="7-keto-8-aminopelargonic acid synthetase" /protein_id="NP_459773.1" /db_xref="GeneID:1252315" /translation="MSWQQRVDDALTARRVTDTLRRRYVVSQGAGRWLVANGRQYLNF SSNDYLGLSQHPQIIRAWQQAATRFGVGSGGSGHISGYSVAHQALEEELAQWLGYPRA LLFISGFAANQAVITALMKKNDRIVADRLSHASLLEAANLSPAQLRRFIHNDTQHLSR LLQSPCVGQQLVVTEGVYSMDGDSAPLAEIQHIARRHHAWLLVDDAHGIGVTGDEGRG TCWLRGVKPELLVVTFGKGFGVSGAAVLCSESVADYLLQFARHLVYSTSMPPAQAQAL SASLAVIRSDEGGERREKLAALVQRFRAGVNASRFTLLNAHSAIQPLIVGDNSRALRL AEALRQQGCWATAIRPPTVPVGTARLRLTLTQAHEACDIDRLLEVLHGAGE" misc_feature 861210..862361 /gene="bioF" /locus_tag="STM0795" /note="8-amino-7-oxononanoate synthase; Reviewed; Region: PRK05958" /db_xref="CDD:235655" misc_feature order(861348..861350,861528..861536,861606..861608, 861732..861734,861744..861749,861819..861821, 861825..861830,861906..861908,861915..861917, 862290..862292) /gene="bioF" /locus_tag="STM0795" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:99747" misc_feature order(861528..861536,861606..861608,861732..861734, 861744..861746,861819..861821,861825..861830, 861906..861908,861915..861917) /gene="bioF" /locus_tag="STM0795" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99747" misc_feature 861915..861917 /gene="bioF" /locus_tag="STM0795" /note="catalytic residue [active]" /db_xref="CDD:99747" gene 862338..863106 /gene="bioC" /locus_tag="STM0796" /db_xref="GeneID:1252316" regulatory 862338..862343 /regulatory_class="ribosome_binding_site" /gene="bioC" /locus_tag="STM0796" /note="putative RBS for bioC; RegulonDB:STMS1H001097" CDS 862351..863106 /gene="bioC" /locus_tag="STM0796" /note="similar to E. coli biotin biosynthesis; reaction prior to pimeloyl CoA (AAC73864.1); Blastp hit to AAC73864.1 (251 aa), 70% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="biotin biosynthesis; reaction prior to pimeloyl CoA" /protein_id="NP_459774.1" /db_xref="GeneID:1252316" /translation="MAQVNKQAIAAAFGRAASQYEQHASLQQHSADALLTLLTGRQFA SVLDAGCGPGRMSRYWRERGSEVTALDLSLPMLQQARDRQAAHHYLLADIEAIPHDAE VFDLAWSNLAVQWCGDLRDALSELYRVVRPGGVVAFTTLCQGSLPELRQAWQAVDNRA HANSFLPEEAIDHALRGWRAFRHTQAMTLWFEDALSAMRSLKGIGATHLHEGRESDVL TRARLRQIQLAWPQRQGKYPLTYHLFMGVIERD" misc_feature 862351..863103 /gene="bioC" /locus_tag="STM0796" /note="biotin biosynthesis protein BioC; Provisional; Region: PRK10258" /db_xref="CDD:182340" gene 863083..863785 /gene="bioD" /locus_tag="STM0797" /db_xref="GeneID:1252317" regulatory 863083..863088 /regulatory_class="ribosome_binding_site" /gene="bioD" /locus_tag="STM0797" /note="putative RBS for bioD; RegulonDB:STMS1H001098" CDS 863099..863785 /gene="bioD" /locus_tag="STM0797" /EC_number="6.3.3.3" /note="similar to E. coli dethiobiotin synthetase (AAC73865.1); Blastp hit to AAC73865.1 (225 aa), 74% identity in aa 1 - 225" /codon_start=1 /transl_table=11 /product="dethiobiotin synthetase" /protein_id="NP_459775.1" /db_xref="GeneID:1252317" /translation="MTKRYFVTGTDTEVGKTVASCALLQAATQLGYQTVGYKPVASGS EMTTDGLRNSDALALQRNSSLPQPYSAINPYTFAEPTSPHIVSADEGRAIDAAVLSRG LRTLEAQADWVLTEGAGGWFTPLSATLTFADWVQTEQLPVILVVGVKLGCINHAMLTA LAVEQAGLPLVGWIANDIQPPGARHGEYLATLRRVIPAPLLGEIPWLGVSPSQAATGQ YLDLSPLERA" misc_feature 863102..863770 /gene="bioD" /locus_tag="STM0797" /note="Dethiobiotin synthetase [Coenzyme transport and metabolism]; Region: BioD; COG0132" /db_xref="CDD:439902" protein_bind 864343..864361 /note="putative binding site for LexA, RegulonDB: STMS1H000245" /bound_moiety="LexA" gene 864348..866457 /gene="uvrB" /locus_tag="STM0798" /db_xref="GeneID:1252318" regulatory 864348..864356 /regulatory_class="minus_35_signal" /gene="uvrB" /locus_tag="STM0798" /note="putative -35_signal for uvrB; RegulonDB:STMLTH004706" regulatory 864372..864380 /regulatory_class="minus_10_signal" /gene="uvrB" /locus_tag="STM0798" /note="putative -10_signal for uvrB; RegulonDB:STMLTH004706" regulatory 864423..864428 /regulatory_class="ribosome_binding_site" /gene="uvrB" /locus_tag="STM0798" /note="putative RBS for uvrB; RegulonDB:STMS1H001099" CDS 864436..866457 /gene="uvrB" /locus_tag="STM0798" /note="similar to E. coli DNA repair; excision nuclease subunit B (AAC73866.1); Blastp hit to AAC73866.1 (673 aa), 95% identity in aa 1 - 673" /codon_start=1 /transl_table=11 /product="UvrB with UvrAC is a DNA excision repair enzyme" /protein_id="NP_459776.1" /db_xref="GeneID:1252318" /translation="MSKPFKLNSAFKPSGDQPDAIRRLEEGLEDGLAHQTLLGVTGSG KTFTIANVIADLQRPTMVLAPNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYV PSSDTFIEKDASVNEHIEQMRLSATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLH LTVGMLIDQRAILRRLAELQYTRNDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFD EEVERLSLFDPLTGQVESTVPRYTIYPKTHYVTPRERILQAMEEIKDELADRRKVLLA NNKLLEEQRLSQRTQFDLEMMNELGYCSGIENYSRFLSGRGPGEPPPTLFDYLPADGL LVVDESHVTIPQIGGMYRGDRARKETLVEYGFRLPSALDNRPLKFEEFEALAPQTIYV SATPGNYELEKSGDEVVDQVVRPTGLLDPIIEVRPVATQVDDLLSEIRQRAAINERVL VTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVERMEIIRDLRLGEFDVLVGINLLRE GLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKAILYGDKITPSMAKAIG ETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNIAKTKAKGKGKGRSTAKAGIVE LDMTPKALQQKIHELEGQMMQHAQNLEFEEAAQIRDQLHQLRELFIAAS" misc_feature 864436..866454 /gene="uvrB" /locus_tag="STM0798" /note="excinuclease ABC subunit UvrB; Region: PRK05298" /db_xref="CDD:235395" gene 866766..866939 /locus_tag="STM0799" /db_xref="GeneID:1252319" CDS 866766..866939 /locus_tag="STM0799" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_447236.1" /db_xref="GeneID:1252319" /translation="MATDYIILLKKEVMEARASISQALQILNDLSEIMTTVTSYLKLR ISLSVTLGYVQIR" gene 866940..869244 /gene="slrP" /locus_tag="STM0800" /db_xref="GeneID:1252320" regulatory 866940..866945 /regulatory_class="ribosome_binding_site" /gene="slrP" /locus_tag="STM0800" /note="putative RBS for slrP; RegulonDB:STMS1H001100" CDS 866947..869244 /gene="slrP" /locus_tag="STM0800" /note="leucine-rich repeat protein SlrP (gi|5107020)" /codon_start=1 /transl_table=11 /product="leucine-rich repeat protein" /protein_id="NP_459778.1" /db_xref="GeneID:1252320" /translation="MFNITNIQSTARHQSISNEASTEVPLKEEIWNKISAFFSSEHQV EAQNCIAYLCHPPETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQ EILSIVFNTEGYTVEGGGKSVTYTRVTESEQASSASGSKDAVNYELIWSEWVKEAPAK EAANREEAVQRMRDCLKNNKTELRLKILGLTTIPAYIPEQITTLILDNNELKSLPENL QGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPERLPSALQSLDLFHNKISC LPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGE NALTSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLPAALQI MQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQNMQRLMSSVDYQGPRVL FAMGDFSIVRVTRPLHQAVQGWLTSLEEEDVNQWRAFEAEANAAAFSGFLDYLGDTQN TRHPDFKEQVSAWLMRLAEDSALRETVFIIAMNATISCEDRVTLAYHQMQEATLVHDA ERGAFDSHLAELIMAGREIFRLEQIESLAREKVKRLFFIDEVEVFLGFQNQLRESLSL TTMTRDMRFYNVSGITESDLDEAEIRIKMAENRDFHKWFALWGPWHKVLERIAPEEWR EMMAKRDECIETDEYQSRVNAELEDLRIADDSDAERTTEVQMDAERAIGIKIMEEINQ TLFTEIMENILLKKEVSSLMSAYWR" misc_feature 866947..869238 /gene="slrP" /locus_tag="STM0800" /note="type III secretion system effector E3 ubiquitin transferase SlrP; Region: PRK15370" /db_xref="CDD:185268" misc_feature 867487..867546 /gene="slrP" /locus_tag="STM0800" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 867547..867609 /gene="slrP" /locus_tag="STM0800" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 867610..867672 /gene="slrP" /locus_tag="STM0800" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 867673..867735 /gene="slrP" /locus_tag="STM0800" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 867736..867798 /gene="slrP" /locus_tag="STM0800" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 867799..867864 /gene="slrP" /locus_tag="STM0800" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 867868..867933 /gene="slrP" /locus_tag="STM0800" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature 867988..868050 /gene="slrP" /locus_tag="STM0800" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" gene complement(869336..870255) /gene="ybhK" /locus_tag="STM0801" /db_xref="GeneID:1252321" CDS complement(869336..870244) /gene="ybhK" /locus_tag="STM0801" /note="similar to E. coli putative structural protein (AAC73867.1); Blastp hit to AAC73867.1 (302 aa), 91% identity in aa 1 - 302" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459779.1" /db_xref="GeneID:1252321" /translation="MRNRTLADLDRVVALGGGHGLGRVLSSLSSLGSRLTGIVTTTDN GGSTGRIRRSEGGIAWGDMRNCLNQLITEPSVASAMFEYRFGGNGELSGHNLGNLMLK ALDHLSVRPLEAINLIRNLLKVDAQLIPMSELPVDLMAIDDQGHEIYGEVNIDQLATP PQEIMLTPNVPATREAVQAINDADLILIGPGSFYTSLMPCLLLDELAQALRRTPAPMV YIGNLGRELSLPAASLTLVDKLAMMEQYIGKKVIDAVVVGPRVDVSAVNDRLVIQEVL EASDIPYRHDRQLLHNALEKALQALG" misc_feature complement(869348..870211) /gene="ybhK" /locus_tag="STM0801" /note="Family of CofD-like proteins and proteins related to YvcK; Region: CofD_YvcK; cl00425" /db_xref="CDD:444899" misc_feature complement(order(869567..869572,869657..869659, 869669..869674,870188..870196)) /gene="ybhK" /locus_tag="STM0801" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:132873" misc_feature complement(order(869951..869953,870053..870055, 870062..870064,870104..870106,870116..870118)) /gene="ybhK" /locus_tag="STM0801" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:132873" misc_feature complement(order(869882..869887,869894..869896, 869924..869929,869933..869938,869945..869950, 869957..869959,869972..869974)) /gene="ybhK" /locus_tag="STM0801" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132873" regulatory complement(870250..870255) /regulatory_class="ribosome_binding_site" /gene="ybhK" /locus_tag="STM0801" /note="putative RBS for ybhK; RegulonDB:STMS1H001101" gene 870632..871630 /gene="moaA" /locus_tag="STM0802" /db_xref="GeneID:1252322" regulatory 870632..870637 /regulatory_class="ribosome_binding_site" /gene="moaA" /locus_tag="STM0802" /note="putative RBS for moaA; RegulonDB:STMS1H001102" CDS 870641..871630 /gene="moaA" /locus_tag="STM0802" /note="similar to E. coli molybdopterin biosynthesis, protein A (AAC73868.1); Blastp hit to AAC73868.1 (329 aa), 92% identity in aa 1 - 329" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis, protein A" /protein_id="NP_459780.1" /db_xref="GeneID:1252322" /translation="MASQLTDAFARKFYYLRLSITDVCNFRCTYCLPDGYKPGGVTNN GFLTVDEIRRVTRAFASLGTEKVRLTGGEPSLRRDFTDIIAAVGENDAIRQIAVTTNG YRLARDAANWREAGLTGVNVSVDSLDARQFHAITGQDKFRQVMAGIDAAFDAGFEKVK VNTVLMRDVNHHQLDTFLAWIQPRPIQLRFIELMETGEGSDLFRKHHISGQVLRDELI KRGWIHQLRQRSDGPAQVFCHPDYAGEIGLIMPYEKDFCATCNRLRVSSVGKLHLCLF GDGGVSLRDLLQDDAQQYALEERISDALREKKQTHFLHQSNTGITQNLSYIGG" misc_feature 870641..871627 /gene="moaA" /locus_tag="STM0802" /note="GTP 3',8-cyclase MoaA; Region: moaA; PRK00164" /db_xref="CDD:234672" gene 871639..872164 /gene="moaB" /locus_tag="STM0803" /db_xref="GeneID:1252323" regulatory 871639..871644 /regulatory_class="ribosome_binding_site" /gene="moaB" /locus_tag="STM0803" /note="putative RBS for moaB; RegulonDB:STMS1H001103" CDS 871652..872164 /gene="moaB" /locus_tag="STM0803" /note="similar to E. coli molybdopterin biosynthesis, protein B (AAC73869.1); Blastp hit to AAC73869.1 (170 aa), 95% identity in aa 1 - 170" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis, protein B" /protein_id="NP_459781.1" /db_xref="GeneID:1252323" /translation="MSQVSAEFIPTRIAILTVSSRRGEEDDTSGHYLRDSAQEAGHEV VAKAIVKENRYAIRAQVSAWIASDEVQVVLITGGTGLTEGDQAPEALLPLFDREVEGF GEVFRMLSFEEIGTATLQSRAVAGVANNTLIFAMPGSTKACRTAWENIIAPQLDARTR PCNFHPHLKK" misc_feature 871670..872158 /gene="moaB" /locus_tag="STM0803" /note="molybdenum cofactor biosynthesis protein B, proteobacterial; Region: moaB_proteo; TIGR02667" /db_xref="CDD:131715" misc_feature order(871883..871891,871979..871981,872060..872065, 872075..872077,872084..872086) /gene="moaB" /locus_tag="STM0803" /note="MPT binding site [active]" /db_xref="CDD:238451" misc_feature order(871889..871891,871895..871900,871904..871906, 871916..871918,871940..871948,871961..871963, 871970..871975,872006..872008,872015..872017) /gene="moaB" /locus_tag="STM0803" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238451" gene 872156..872652 /gene="moaC" /locus_tag="STM0804" /db_xref="GeneID:1252324" regulatory 872156..872161 /regulatory_class="ribosome_binding_site" /gene="moaC" /locus_tag="STM0804" /note="putative RBS for moaC; RegulonDB:STMS1H001104" CDS 872167..872652 /gene="moaC" /locus_tag="STM0804" /note="similar to E. coli molybdopterin biosynthesis, protein C (AAC73870.1); Blastp hit to AAC73870.1 (161 aa), 94% identity in aa 1 - 161" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis, protein C" /protein_id="NP_459782.1" /db_xref="GeneID:1252324" /translation="MSQLTHINAAGEAHMVDVSAKAETVREARAEAFVTMRSETLAMI VDGKHHKGDVFATARIAGIQAAKRTWELIPLCHPLLLSKVEIQLQAEPEHNRVRIESL CRLTGKTGVEMEALTAASVAALTIYDMCKAVQKDMVIGPVRLLAKSGGKSGDFKVDAH D" misc_feature 872167..872643 /gene="moaC" /locus_tag="STM0804" /note="cyclic pyranopterin monophosphate synthase MoaC; Region: moaC; PRK09364" /db_xref="CDD:236483" misc_feature order(872209..872220,872323..872400,872407..872427, 872581..872616) /gene="moaC" /locus_tag="STM0804" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238708" misc_feature order(872317..872325,872371..872385,872566..872574) /gene="moaC" /locus_tag="STM0804" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238708" misc_feature order(872317..872319,872365..872367,872386..872388, 872392..872397,872491..872493,872500..872508, 872515..872517,872548..872550,872557..872559) /gene="moaC" /locus_tag="STM0804" /note="putative active site [active]" /db_xref="CDD:238708" gene 872632..872890 /gene="moaD" /locus_tag="STM0805" /db_xref="GeneID:1252325" regulatory 872632..872637 /regulatory_class="ribosome_binding_site" /gene="moaD" /locus_tag="STM0805" /note="putative RBS for moaD; RegulonDB:STMS1H001105" CDS 872639..872890 /gene="moaD" /locus_tag="STM0805" /note="similar to E. coli molybdopterin biosynthesis (AAC73871.1); Blastp hit to AAC73871.1 (81 aa), 86% identity in aa 1 - 81" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis protein" /protein_id="NP_459783.3" /db_xref="GeneID:1252325" /translation="MRMIKVLFFAQVRELTGTDALDLPADFSTVESLRQHLATKSDRW ALALEDGKLLAAVNQTLVSFDHPLTAGDEVAFFPPVTGG" misc_feature 872645..872887 /gene="moaD" /locus_tag="STM0805" /note="molybdopterin synthase small subunit; Provisional; Region: moaD; PRK11130" /db_xref="CDD:182985" misc_feature order(872663..872668,872789..872791,872795..872800, 872804..872806,872813..872824,872867..872887) /gene="moaD" /locus_tag="STM0805" /note="MoaD-MoeB interaction site [polypeptide binding]; other site" /db_xref="CDD:340452" misc_feature order(872663..872668,872810..872818,872855..872857, 872870..872887) /gene="moaD" /locus_tag="STM0805" /note="MoaD-MoaE interaction site [polypeptide binding]; other site" /db_xref="CDD:340452" misc_feature order(872663..872668,872813..872818,872873..872887) /gene="moaD" /locus_tag="STM0805" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:340452" misc_feature 872885..872887 /gene="moaD" /locus_tag="STM0805" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:340452" gene 872879..873344 /gene="moaE" /locus_tag="STM0806" /db_xref="GeneID:1252326" regulatory 872879..872884 /regulatory_class="ribosome_binding_site" /gene="moaD" /locus_tag="STM0805" /note="putative RBS for moaE; RegulonDB:STMS1H001106" CDS 872892..873344 /gene="moaE" /locus_tag="STM0806" /note="similar to E. coli molybdopterin converting factor, subunit 2 (AAC73872.1); Blastp hit to AAC73872.1 (150 aa), 91% identity in aa 1 - 150" /codon_start=1 /transl_table=11 /product="molybdopterin converting factor, subunit 2" /protein_id="NP_459784.1" /db_xref="GeneID:1252326" /translation="MHETRIVVGPAPFSVGEEYSWLAARDEDGAVVTFTGKVRNHNLG DSVKALTLEHYPGMTEKALAEIVAKARSRWPLGRVTVIHRVGELWPGDEIVFVGVTSA HRSSAFDAGQFIMDYLKTRAPFWKREATPEGDRWVEARDSDQQLAKRW" misc_feature 872892..873341 /gene="moaE" /locus_tag="STM0806" /note="molybdopterin synthase catalytic subunit MoaE; Region: moaE; PRK10678" /db_xref="CDD:182642" misc_feature order(872946..872948,872958..872960,872976..872978, 872982..872996,873000..873002,873006..873008, 873168..873170,873195..873197,873201..873203, 873225..873227,873237..873239) /gene="moaE" /locus_tag="STM0806" /note="MoaE homodimer interface [polypeptide binding]; other site" /db_xref="CDD:238385" misc_feature order(873048..873050,873054..873056,873063..873065, 873072..873074,873084..873086,873138..873140, 873246..873251,873255..873257,873261..873269, 873297..873299) /gene="moaE" /locus_tag="STM0806" /note="MoaD interaction [polypeptide binding]; other site" /db_xref="CDD:238385" misc_feature order(873246..873248,873267..873269) /gene="moaE" /locus_tag="STM0806" /note="active site residues [active]" /db_xref="CDD:238385" gene 873380..874096 /gene="ybhL" /locus_tag="STM0807" /db_xref="GeneID:1252327" regulatory 873380..873385 /regulatory_class="ribosome_binding_site" /gene="ybhL" /locus_tag="STM0807" /note="putative RBS for ybhL; RegulonDB:STMS1H001107" CDS 873392..874096 /gene="ybhL" /locus_tag="STM0807" /note="similar to E. coli orf, hypothetical protein (AAC73873.1); Blastp hit to AAC73873.1 (234 aa), 87% identity in aa 1 - 234" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_459785.1" /db_xref="GeneID:1252327" /translation="MDRFPRSDSIVQARSGLQTYMAQVYGWMTVGLLLTAFIAWYAAN TPAVMMFVFSSKITFFGLIIAQLALVFVLSGLVHKLSAGMATTLFMLYSALTGLTLSS IFIVYTYSSIASTFVVTGGMFGAMSLYGYTTKRDLSGFGNMLFMALIGIVLASLVNFW LKSEALMWAVTYIGVVVFVGLTAYDTQKLKNIGEQIDTRDSANLRKYSILGALTLYLD FINLFLMLLRIFGNRR" misc_feature 873392..874093 /gene="ybhL" /locus_tag="STM0807" /note="Integral membrane protein YbhL, putative Ca2+ regulator, Bax inhibitor (BI-1)/TMBIM family [Inorganic ion transport and metabolism]; Region: YbhL; COG0670" /db_xref="CDD:440434" gene 874243..874950 /gene="ybhM" /locus_tag="STM0808" /db_xref="GeneID:1252328" CDS 874243..874950 /gene="ybhM" /locus_tag="STM0808" /note="similar to E. coli orf, hypothetical protein (AAC73874.1); Blastp hit to AAC73874.1 (237 aa), 31% identity in aa 24 - 228" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_459786.1" /db_xref="GeneID:1252328" /translation="MGPLAAIRIRQIAFIPSTMLSLTYWYTALGLWCTAGIIWLTLYS HFLITHVQPVVVLWISALLLGLGYGAITCLSRFGTVVATLIYIAIITLTGVSLAYLFS GGATIFVIVGIMFSLNALFIFYLNISSGLFRPLIFMAVSGIIAAIVVNSLVASSTLVW IVSVLTVLVWTLITALEKSTLHGYARMLYHSEFSSLPRCALFGALTLYLGIINAVVTL CRYIILMILEILLSFRP" misc_feature 874309..874881 /gene="ybhM" /locus_tag="STM0808" /note="BAX inhibitor (BI)-1/YccA-like protein family; Region: BI-1-like; cl00473" /db_xref="CDD:469783" gene 874968..875582 /locus_tag="STM0809" /db_xref="GeneID:1252329" regulatory 874968..874973 /regulatory_class="ribosome_binding_site" /locus_tag="STM0809" /note="putative RBS for STM0809; RegulonDB:STMS1H001108" CDS 874974..875582 /locus_tag="STM0809" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459787.1" /db_xref="GeneID:1252329" /translation="MVMMGIMSKLCGKQFWLAFCEAKDVTRAIKNGGEDFNKKCPPAL ISHFITGLSWEHSLPNPAPVCAFSFMLLVGGVCSAHFVFDKFILYWPLNIIIYFGSAI GIMLCVMAEVWLIAKGFILGLRLCVLLFLLNIMLCGTGLFDVLCHQNSELKSDLVIAI IMVVLCRWVMNGETFTMMIRFCLGRRLVRVALQKYLTSQTRK" gene 875583..876150 /locus_tag="STM0810" /db_xref="GeneID:1252330" regulatory 875583..875588 /regulatory_class="ribosome_binding_site" /locus_tag="STM0810" /note="putative RBS for STM0810; RegulonDB:STMS1H001109" CDS 875590..876150 /locus_tag="STM0810" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459788.1" /db_xref="GeneID:1252330" /translation="MNLMTWLTGKTLAELVKKGQLIPPEIKLPVYPASHYKKNWYEQG IPHGGVIGLTAIMMTMTWIVSINMVIAQFELHNKKHLELVFFLAVGYIAFLTPSNQLL LKGRMSGVIIYRYALLLVIISVTLATFCTLSSVFMGEFHEVLLLLFSWSLLLFSRLQM NTSFFSAYVYFYRIKRVVLESENASA" gene complement(876153..877131) /gene="ybhN" /locus_tag="STM0811" /db_xref="GeneID:1252331" CDS complement(876153..877115) /gene="ybhN" /locus_tag="STM0811" /note="similar to E. coli orf, hypothetical protein (AAC73875.1); Blastp hit to AAC73875.1 (318 aa), 89% identity in aa 1 - 318" /codon_start=1 /transl_table=11 /product="putative negative regulator" /protein_id="NP_459789.1" /db_xref="GeneID:1252331" /translation="MAKSHPRWRLAKKVLTWLFFIAVVVLLVVYAKKVDWGDVWTVIR DYNRTALLSAVGLVIVSYLLYGCYDLLGRLYCGHKLAKRQVMLVSFVCYAFNLTLSTW VGGIGMRYRLYSRLGLPGSTITRIFSLSITTNWLGYILLGGIIFTFGIVQLPDHWYID AGTLRILGIVLLLIIAVYLWFCAFAKRRHMTIKGQKLVLPSWKFALAQMAISSANWMA MGAIIWLLMGQDVNYFFVLGVLLVSSIAGVIVHIPAGIGVLEAVFLALLAGEHTSQGT IIAALLAYRVLYYFIPLLLALVCYLILESRAKKLRAKNERAMAK" misc_feature complement(876189..876989) /gene="ybhN" /locus_tag="STM0811" /note="Predicted membrane flippase AglD2/YbhN, UPF0104 family [Cell wall/membrane/envelope biogenesis]; Region: AglD2; COG0392" /db_xref="CDD:440161" gene complement(877115..878370) /gene="ybhO" /locus_tag="STM0812" /db_xref="GeneID:1252332" CDS complement(877115..878356) /gene="ybhO" /locus_tag="STM0812" /note="similar to E. coli putative synthetase (AAC73876.1); Blastp hit to AAC73876.1 (413 aa), 86% identity in aa 1 - 413" /codon_start=1 /transl_table=11 /product="cardiolipin (CL) synthase" /protein_id="NP_459790.1" /db_xref="GeneID:1252332" /translation="MKCGWREGNQIQLLENGDQFYPAVFEAIAQAQQKIILETFILFE DEVGKKLHTALLKAAQRGVKAEVLLDGYGSPDLSDAFVGELTSAGVIFRYYDPRPRLL GLRTNIFRRMHRKIVVIDDRIAFVGGINYSAEHMSDYGPQAKQDYAVRVEGPVVADIL QFEVENLPGQSPARRWWKRHHQAEENRHPGEAQALFVWRDNEEHRDDIERHYLKMLTQ AKREVIIANAYFFPGYRLLHAMRKAARRGVSVKLIVQGEPDMPIVKVGARLLYNYLVK GGVQVYEYRRRPLHGKVALMDDHWATVGSSNLDPLSLSLNLEANLIIHDRTFNQTLRD NLQGIIVNDCKQVDESMLPKRTWWNLTKSVLAFHFLRHFPALVGWLPAHTPHLAQVPP PAQPEMETQDRVDPENTGVKP" misc_feature complement(877121..878353) /gene="ybhO" /locus_tag="STM0812" /note="cardiolipin synthase ClsB; Region: PRK11263" /db_xref="CDD:236888" regulatory complement(877126..877131) /regulatory_class="ribosome_binding_site" /gene="ybhN" /locus_tag="STM0811" /note="putative RBS for ybhN; RegulonDB:STMS1H001110" gene complement(878353..879121) /gene="ybhP" /locus_tag="STM0813" /db_xref="GeneID:1252333" CDS complement(878353..879111) /gene="ybhP" /locus_tag="STM0813" /note="similar to E. coli orf, hypothetical protein (AAC73877.1); Blastp hit to AAC73877.1 (253 aa), 86% identity in aa 1 - 253" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459791.1" /db_xref="GeneID:1252333" /translation="MTQHTRNFSFKVLTINTHKGFTAFNKRFILPELRDAVRTVGADI VCLQEVMGAHEVHPLHIENWPDTTHYEFLADTMWSDFAYGRNAVYPEGHHGNAVLSRY PIEHYENRDVSVGGSEKRGVLYCRITPPMLNRPIHVMCVHLGLRESHRQAQLTMLAGW VNALPESEPVLVAGDFNDWRQKAGPPLNAAGLEEIFTRAHGRPARTFPVSMPLLRLDR IYVKNANASSPTALPLRNWRHLSDHAPLSAEIHL" misc_feature complement(878356..879087) /gene="ybhP" /locus_tag="STM0813" /note="Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family [General function prediction only]; Region: ElsH; COG3568" /db_xref="CDD:442789" regulatory complement(878365..878370) /regulatory_class="ribosome_binding_site" /gene="ybhP" /locus_tag="STM0813" /note="putative RBS for ybhO; RegulonDB:STMS1H001111" regulatory complement(879116..879121) /regulatory_class="ribosome_binding_site" /gene="ybhP" /locus_tag="STM0813" /note="putative RBS for ybhP; RegulonDB:STMS1H001112" gene 879231..879654 /gene="ybhQ" /locus_tag="STM0814" /db_xref="GeneID:1252334" regulatory 879231..879236 /regulatory_class="ribosome_binding_site" /gene="ybhQ" /locus_tag="STM0814" /note="putative RBS for ybhQ; RegulonDB:STMS1H001113" CDS 879244..879654 /gene="ybhQ" /locus_tag="STM0814" /note="similar to E. coli orf, hypothetical protein (AAC73878.1); Blastp hit to AAC73878.1 (136 aa), 84% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459792.1" /db_xref="GeneID:1252334" /translation="MKWQQRVRVATGLGCWQIMLHLLVVAMLVIGWMSGTLVRVGLGL CVLYGVTVLLMLALQRHHEQRWRDVADVLEELTTTWYFGTALIVLWLLSRVLQNNVLL ALAGLAILAGPAVVSLLAKDKKLHHFASKHRIRR" misc_feature 879244..879639 /gene="ybhQ" /locus_tag="STM0814" /note="Putative inner membrane protein YbhQ; Region: YbhQ; pfam11076" /db_xref="CDD:431643" gene complement(879616..880732) /gene="ybhR" /locus_tag="STM0815" /db_xref="GeneID:1252335" CDS complement(879616..880722) /gene="ybhR" /locus_tag="STM0815" /note="similar to E. coli orf, hypothetical protein (AAC73879.1); Blastp hit to AAC73879.1 (368 aa), 95% identity in aa 1 - 368" /codon_start=1 /transl_table=11 /product="putative ABC superfamily (membrane) transport protein" /protein_id="NP_459793.1" /db_xref="GeneID:1252335" /translation="MFHRLWTLIRKELQSLLREPQTRAILILPVLIQVILFPFAATLE VTNATIAIYNEDNGKHSVELTQRFARAKAFTHVLLLNSPQEIQPTIDTQKALLLVRFP ADFSRNLDTFQPAPMQLILDGRNSNSAQIAANYLQQIVKEYQQTLMDGKPKPNNSELV VRNWYNPNLDYKWFVVPSLIAMITTIGVMIVTSLSVAREREQGTLDQLLVSPLTTWQI FVGKAVPALIVATFQATIVLAIGIWAYQIPFAGSLALFYFTMVIYGLSLVGFGLLISS LCATQQQAFIGVFVFMMPAILLSGYVSPVENMPVWLQNLTWINPIRHFTDITKQIYLK DASLGIVWGSLWPLLVIAATTGSAAYAMFRRKVM" misc_feature complement(<879829..880719) /gene="ybhR" /locus_tag="STM0815" /note="ABC-type Na+ efflux pump, permease component NatB [Energy production and conversion, Inorganic ion transport and metabolism]; Region: NatB; COG1668" /db_xref="CDD:441274" misc_feature complement(879625..880212) /gene="ybhR" /locus_tag="STM0815" /note="ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: YadH; COG0842" /db_xref="CDD:440604" regulatory complement(880727..880732) /regulatory_class="ribosome_binding_site" /gene="ybhR" /locus_tag="STM0815" /note="putative RBS for ybhR; RegulonDB:STMS1H001114" gene complement(880838..881981) /gene="ybhS" /locus_tag="STM0816" /db_xref="GeneID:1252336" CDS complement(880838..881968) /gene="ybhS" /locus_tag="STM0816" /note="similar to E. coli orf, hypothetical protein (AAC73880.1); Blastp hit to AAC73880.1 (377 aa), 94% identity in aa 6 - 377" /codon_start=1 /transl_table=11 /product="putative ABC superfamily (membrane) transport protein" /protein_id="NP_459794.1" /db_xref="GeneID:1252336" /translation="MSKSLSWRRVRALCVKETRQIVRDPSSWLIAVVIPLLLLFIFGY GINLDSSKLRVGILLEQQSQEALDFTHAMTGSPYIDATISDNRHELIEKMQAGRIRGL VVIPVDFAQQMARDGDSAPIQVITDGSEPNTANFVQGYVEGIWQIWQQQRAEDRGDTF EPLIDVQTRYWFNPAAISQHFIIPGAVTIIMTVIGAILTSLVVAREWERGTMEALLST EVTRVELLLCKLIPYYFLGMLAMLLCMLVSVFILGVPYRGSLVILFIITSLFLLSTLG MGLLISTITRNQFNAAQVALNAAFLPSIMLSGFIFQIDSMPAVIRAVTYIIPARYFVS TLQSLFLAGNIPVVLGVNVLFLIASAVMFIGLTWLKTKRRLD" misc_feature complement(880901..>881965) /gene="ybhS" /locus_tag="STM0816" /note="ribosome-associated ATPase/putative transporter RbbA; Region: ABC2_perm_RbbA; NF033858" /db_xref="CDD:468210" gene complement(881961..883707) /gene="ybhF" /locus_tag="STM0817" /db_xref="GeneID:1252337" CDS complement(881961..883697) /gene="ybhF" /locus_tag="STM0817" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73881.1); Blastp hit to AAC73881.1 (583 aa), 91% identity in aa 6 - 583" /codon_start=1 /transl_table=11 /product="putative ABC-type multidrug transport system, ATPase component" /protein_id="NP_459795.1" /db_xref="GeneID:1252337" /translation="MSEAVITLHGLTKRFAGMDKPAVAPLDCTIHSGYVTGLVGPDGA GKTTLMRMLAGLLKADGGSASVLGFDPIQNDSELHAVLGYMPQKFGLYEDLTVMENLN LYADLRSVTGEIREKTFARLLEFTALGPFTGRLAGKLSGGMKQKLGLACTLVGEPKVL LLDEPGVGVDPISRRELWQMVHELAGDGMLILWSTSYLDEAEQCRDVLLMNEGELLYQ GEPKALTQTMAGRSFLMSSPQENNRKLLQRALRLPQVSDGMIQGRSVRLILKKEATAA DIRQAEGMPEITLNETAPRFEDAFIDLLGGAGTSESPLGSILHTVEGTAGETVIEAQE LTKKFGDFAATDHVNFVVQRGEIFGLLGPNGAGKSTTFKMMCGLLVPTSGKALVLDMD LKVSSGKARQHLGYMAQKFSLYGNLTVEQNLRFFSGVYGLRGRAQNEKIQRMSEAFGL KSIASHPTDALPLGFKQRLALACSLMHEPDILFLDEPTSGVDPLTRREFWLHINSMVE KGVTVMVTTHFMDEAEYCDRIGLVYRGKLIASGTPDDLKAQAADEQQADPTMEQAFIT LINDWDKEHTHE" misc_feature complement(<882003..883685) /gene="ybhF" /locus_tag="STM0817" /note="ribosome-associated ATPase/putative transporter RbbA; Region: ABC2_perm_RbbA; NF033858" /db_xref="CDD:468210" regulatory complement(881976..881981) /regulatory_class="ribosome_binding_site" /gene="ybhS" /locus_tag="STM0816" /note="putative RBS for ybhS; RegulonDB:STMS1H001115" gene complement(883690..884700) /locus_tag="STM0818" /db_xref="GeneID:1252338" CDS complement(883690..884685) /locus_tag="STM0818" /note="similar to E. coli putative membrane protein (AAC73882.1); Blastp hit to AAC73882.1 (332 aa), 87% identity in aa 2 - 332" /codon_start=1 /transl_table=11 /product="membrane permease predicted cation efflux pump" /protein_id="NP_459796.1" /db_xref="GeneID:1252338" /translation="MKKPVVIGLAIAAIVAVIAGGTWWYQSRQDDGLTLYGNVDIRTV NISFRVGGRLASLNVDEGDTIKAGQVLGELDHAPYENALMQAKAGVSVAQAQYDLMLA GYRDEEIAQAAAAVRQAQAAYDYAQNFYNRQQGLWKSRTISANDLENARSSRDQAQAT LKSAQDKLSQYRTGNREQDIAQAKASLEQAKAQLAQAQLDLQDTTLIAPANGTLLTRA VEPGSMLNAGSTVLTLSLTRPVWVRAYVDERNLSQTQPGRDILLYTDGRPDKPYHGKI GFVSPTAEFTPKTVETPDLRTDLVYRLRIIVTDADDALRQGMPVTVKFNDEARHE" misc_feature complement(883693..884685) /locus_tag="STM0818" /note="putative efflux pump membrane fusion protein; Provisional; Region: PRK03598" /db_xref="CDD:235136" regulatory complement(883702..883707) /regulatory_class="ribosome_binding_site" /locus_tag="STM0818" /note="putative RBS for ybhF; RegulonDB:STMS1H001116" gene complement(884685..885370) /gene="ybiH" /locus_tag="STM0819" /db_xref="GeneID:1252339" CDS complement(884685..885359) /gene="ybiH" /locus_tag="STM0819" /note="similar to E. coli putative transcriptional regulator (AAC73883.1); Blastp hit to AAC73883.1 (227 aa), 85% identity in aa 5 - 227" /codon_start=1 /transl_table=11 /product="putative transcriptional repressor (TetR/AcrR family)" /protein_id="NP_459797.1" /db_xref="GeneID:1252339" /translation="MNIPTTTTKGEQAKSQLIAAALAQFGEYGLHATTRDIAALAGQN IAAITYYFGSKEDLYLACAQWIADFLGEKFRPHAEKAERLFSQPAPDRDAIRELILLA CKNMIMLLTQEDTVNLSKFISREQLSPTSAYQLVHEQVIDPLHTHLTRLVAAYTGCDA NDTRMILHTHALLGEVLAFRLGKETILLRTGWPQFDEEKAELIYQTVTCHIDLILHGL TQRSLD" misc_feature complement(884688..885359) /gene="ybiH" /locus_tag="STM0819" /note="putative DNA-binding transcriptional regulator; Provisional; Region: PRK11552" /db_xref="CDD:236928" regulatory complement(884695..884700) /regulatory_class="ribosome_binding_site" /gene="ybiH" /locus_tag="STM0819" /note="putative RBS for STM0818; RegulonDB:STMS1H001117" regulatory complement(885365..885370) /regulatory_class="ribosome_binding_site" /gene="ybiH" /locus_tag="STM0819" /note="putative RBS for ybiH; RegulonDB:STMS1H001118" gene 885578..886953 /gene="rhlE" /locus_tag="STM0820" /db_xref="GeneID:1252340" regulatory 885578..885583 /regulatory_class="ribosome_binding_site" /gene="rhlE" /locus_tag="STM0820" /note="putative RBS for rhlE; RegulonDB:STMS1H001119" CDS 885589..886953 /gene="rhlE" /locus_tag="STM0820" /note="similar to E. coli putative ATP-dependent RNA helicase (AAC73884.1); Blastp hit to AAC73884.1 (454 aa), 90% identity in aa 1 - 454" /codon_start=1 /transl_table=11 /product="putative ATP-dependent RNA helicase" /protein_id="NP_459798.1" /db_xref="GeneID:1252340" /translation="MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMAS AQTGTGKTAGFTLPLLQHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADR MLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASE QVTQHVHFVDKKRKRELLSQMIGQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIH GNKSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIG RTGRAAATGEALSLVCVDEHKLLRDIEKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQ QRGGGGGRGRGQNQGGAGRSQQPRRQDSGAAKAKPKPRTGEGKTAGDKARPPRRPRRI TPAQ" misc_feature 885589..886911 /gene="rhlE" /locus_tag="STM0820" /note="ATP-dependent RNA helicase RhlE; Provisional; Region: PRK10590" /db_xref="CDD:236722" misc_feature order(885646..885651,885655..885663,885670..885672, 885724..885747) /gene="rhlE" /locus_tag="STM0820" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350669" gene 887150..889305 /gene="dinG" /locus_tag="STM0821" /db_xref="GeneID:1252341" regulatory 887150..887155 /regulatory_class="ribosome_binding_site" /gene="dinG" /locus_tag="STM0821" /note="putative RBS for dinG; RegulonDB:STMS1H001120" CDS 887161..889305 /gene="dinG" /locus_tag="STM0821" /note="similar to E. coli probably ATP-dependent helicase (AAC73886.1); Blastp hit to AAC73886.1 (716 aa), 91% identity in aa 1 - 716" /codon_start=1 /transl_table=11 /product="LexA regulated (SOS) repair enzyme" /protein_id="NP_459799.1" /db_xref="GeneID:1252341" /translation="MALTAALKAQIAAWYKALQDQIPDFIPRAPQRQMIADVARTLAG EEGRHLAIEAPTGVGKTLSYLIPGIAIAREEQKTLVVSTANVALQDQIFSKDLPLLRK IIPDLRFTAAFGRGRYVCPRNLAALASSEPTQQDLLAFLDDELTPNNQEEQKRCARLK GDLDGYKWDGLRDHTDIAIDDDLWRRLSTDKASCLNRNCHYYRECPFFVARREIQEAE VVVANHALVMAAMESEAVLPEPKHLLLVLDEGHHLPDVARDALEMSAEITASWYRLQL DLFSKLVATCMEQFRPKTTPPLANPERLNAHCEEVYELIASLNAILNLYMPAAQEAEH RFAMGELPDEVMEICQRLAKLTETLRGLAESFLNDLSEKTGSHDIVRLHRVILQMNRA LGMFEAQSKLWRLASMAQSSGAPVSKWATREIREGQLHVWFHCVGIRVSDQLERLLWR SVPHIIVTSATLRSLNSFSRLQEMSGLKEKAGDRFVALDSPFNHVEQGKLVIPQMRYE PTIDNEEQHIAEMAAYFREQLESKKHHGMLVLFASGRAMQRFLEHVADVRLLLLVQGD QPRYRLVELHRKRVESGERSVLVGLQSFAEGLDLKGELLTQVHIHKIAFPPIDSPVVI TEGEWLKSLNRYPFEVQSLPSASFNLIQQVGRLIRSHACRGEVVIYDKRLLTKNYGQR LLNALPVFPIEQPAVPDVIVKPKAKPARRRRR" misc_feature 887164..889248 /gene="dinG" /locus_tag="STM0821" /note="ATP-dependent DNA helicase DinG; Provisional; Region: dinG; PRK11747" /db_xref="CDD:236966" gene 889323..890309 /gene="ybiB" /locus_tag="STM0822" /db_xref="GeneID:1252342" regulatory 889323..889328 /regulatory_class="ribosome_binding_site" /gene="ybiB" /locus_tag="STM0822" /note="putative RBS for ybiB; RegulonDB:STMS1H001121" CDS 889335..890309 /gene="ybiB" /locus_tag="STM0822" /note="similar to E. coli putative enzyme (AAC73887.1); Blastp hit to AAC73887.1 (320 aa), 84% identity in aa 1 - 320" /codon_start=1 /transl_table=11 /product="putative transferase" /protein_id="NP_459800.1" /db_xref="GeneID:1252342" /translation="MDYRKIIKEIGRGKNHARDLDLDTARGLYTRMLNGDVPDLEMGS ILMALRIKGEGEAEMLGFYEAMQNHTIKLTPPADRPLPVVIPSYNGARKQANLTPLLA ILLHKLGFPVVVHGVSEDPTRVLTETIFELMGIIPTLHGGQAQAKLDGRQPVFIPVSA LCPPLEKQLAMRWRMGVRNSAHSLAKLATPFAEDAALRLSSVSHPEYVPRVATFFSRI GGRALLMHGTEGEVYANPQRCPQISLIDSRGVQVLHERQSDTYDEPLSLPATKDPEIT ARWIERCLAGHEPVPQSLKTQMACCLVATGEAATLEDGLARVEQAFSE" misc_feature 889335..890285 /gene="ybiB" /locus_tag="STM0822" /note="glycosyl transferase family protein; Provisional; Region: PRK08136" /db_xref="CDD:236160" gene complement(890465..890737) /gene="ybiJ" /locus_tag="STM0823" /db_xref="GeneID:1252343" CDS complement(890465..890725) /gene="ybiJ" /locus_tag="STM0823" /note="similar to E. coli orf, hypothetical protein (AAC73889.1); Blastp hit to AAC73889.1 (86 aa), 80% identity in aa 1 - 86" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459801.1" /db_xref="GeneID:1252343" /translation="MKTIKYAVAAIALSTLSFGAFAAEPVSASQTQNLHKIGVVSADG ATTLDGLEAKLAEKAAAAGASAYNITSAVGNDKMSGTAVIYK" misc_feature complement(890468..890725) /gene="ybiJ" /locus_tag="STM0823" /note="YdgH/BhsA/McbA-like domain; Region: YdgH_BhsA-like; cl11507" /db_xref="CDD:448290" regulatory complement(890732..890737) /regulatory_class="ribosome_binding_site" /gene="ybiJ" /locus_tag="STM0823" /note="putative RBS for ybiJ; RegulonDB:STMS1H001122" gene complement(891010..891288) /gene="ybiI" /locus_tag="STM0825" /db_xref="GeneID:1252344" CDS complement(891010..891276) /gene="ybiI" /locus_tag="STM0825" /note="similar to E. coli orf, hypothetical protein (AAC73890.1); Blastp hit to AAC73890.1 (88 aa), 80% identity in aa 1 - 88" /codon_start=1 /transl_table=11 /product="putative DnaK suppressor protein" /protein_id="NP_459802.1" /db_xref="GeneID:1252344" /translation="MASGWANDDAVNEQINNTIEDAVARARGELPHGESRDECESCGD PIPEARRKAVPGVRLCIACQQEKDLHNATFSGYNRRGSKDSQLR" misc_feature complement(891013..891276) /gene="ybiI" /locus_tag="STM0825" /note="DksA/TraR family C4-type zinc finger protein; Region: PRK11019" /db_xref="CDD:182903" regulatory complement(891283..891288) /regulatory_class="ribosome_binding_site" /gene="ybiI" /locus_tag="STM0825" /note="putative RBS for ybiI; RegulonDB:STMS1H001124" gene 891469..892407 /gene="ybiN" /locus_tag="STM0826" /db_xref="GeneID:1252345" regulatory 891469..891474 /regulatory_class="ribosome_binding_site" /gene="ybiN" /locus_tag="STM0826" /note="putative RBS for ybiN; RegulonDB:STMS1H001125" CDS 891481..892407 /gene="ybiN" /locus_tag="STM0826" /note="similar to E. coli orf, hypothetical protein (AAC73894.1); Blastp hit to AAC73894.1 (335 aa), 84% identity in aa 28 - 335" /codon_start=1 /transl_table=11 /product="putative SAM-dependent methyltransferase" /protein_id="NP_459803.1" /db_xref="GeneID:1252345" /translation="MSAQKPGLHPRNRHQHRYDLAALCQTTPELTSFLIRTPAGEQSV DFANPQAVKALNKALLAHFYAVTHWDIPPGFLCPPVPGRADYIHHLADLLGETTGSIP AQATILDVGVGANCIYPLIGVHEYGWRFTGSEVSDAAMSSAQAIIQANTGLSRAIRLR RQKDPAAIFTGIIHKNEFYDATLCNPPFHDSAAAARAGSERKRRNLGQNKDDALNFGG QQQELWCEGGEVAFIKKMIAESQSFRRQVLWFTTLVSRGENLPPLYRALTEAGAVKVV KKEMAQGQKQSRFIAWTFMDDDQRRRFITRKR" misc_feature 891481..892404 /gene="ybiN" /locus_tag="STM0826" /note="23S rRNA (adenine(1618)-N(6))-methyltransferase RlmF; Region: PRK11727" /db_xref="CDD:236964" gene complement(892404..894634) /gene="ybiO" /locus_tag="STM0827" /db_xref="GeneID:1252346" CDS complement(892404..894626) /gene="ybiO" /locus_tag="STM0827" /note="similar to E. coli putative transport protein (AAC73895.1); Blastp hit to AAC73895.1 (786 aa), 85% identity in aa 46 - 786" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_459804.1" /db_xref="GeneID:1252346" /translation="MRWTLFILFCLLGAPAHAVAIPGVTTGTSTSQQAAPEPSPEQKK AAYAALADVLENEASRNELIAQLREASTTPPTEPAPALAPPAAKDEKTVLENVTTVTR QYGDAFATRFAQLYRNITDAPHKPFNSQTFTNALTHFLFLAVAVFGFYSVIRLCALPL YRKMGLWARKKNRERSNWLQLPAMIVGAFIIDLLLLALTLFIGQMLSDNFHAGSRTIA FQQSLFLNAFALIEFFKAILRLIFCPNVPELRPFAIQDATARYWNRRMSSLSSLIGYG LIVAVPIISNQVNVQVGAMANVAIMLCITIWALYLIFKNKAEITQHLLSLAERSLAFF SLFIRAFALVWHWLASAYFIVLFFFSLFDPGNSLKFMMGATVRSLAIIGIAAFISGMF TRWIAKTITLSPHTQRNYPELQKRLNGWLSSALKVARFLTVCVAVMLLLNAWGLFDFW HWLHYGAGEKMVDILIRIALILFFSAVGWTILASLIENRLASDIHGRPLPSARTRTLL TLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDIITGVFI QFENGMNTGDLVTIGPLTGTVERMSIRSVGVRQDTGAYHIIPWSSITTFANFVRGIGS VVANYDVDRHEDADKANQALKDAVTALMETEDIRGLIIGEPTFAGIVSLTNTAFTLRV SFTTLPLKQWTVRFALDSQVKKHFDLANVRAPVQTYQVLPAPVGGPSPDSLPPREPTI " misc_feature complement(892407..894626) /gene="ybiO" /locus_tag="STM0827" /note="putative mechanosensitive channel protein; Provisional; Region: PRK11465" /db_xref="CDD:183147" regulatory complement(894629..894634) /regulatory_class="ribosome_binding_site" /gene="ybiO" /locus_tag="STM0827" /note="putative RBS for ybiO; RegulonDB:STMS1H001126" gene complement(894745..895482) /gene="glnQ" /locus_tag="STM0828" /db_xref="GeneID:1252347" CDS complement(894745..895467) /gene="glnQ" /locus_tag="STM0828" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of glutamine high-affinity transport system (AAC73896.1); Blastp hit to AAC73896.1 (240 aa), 95% identity in aa 1 - 240" /codon_start=1 /transl_table=11 /product="glutamine high-affinity transporter" /protein_id="NP_459805.1" /db_xref="GeneID:1252347" /translation="MIEFKNVSKHFGPTQVLHNIDLNIRQGEVVVIIGPSGSGKSTLL RCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGP LRVRGVKKEEAEKQAKALLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKMMLF DEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG SPQALIENPPSPRLQEFLQHVS" misc_feature complement(894748..895467) /gene="glnQ" /locus_tag="STM0828" /note="glutamine ABC transporter ATP-binding protein GlnQ; Region: glnQ; PRK09493" /db_xref="CDD:181906" gene complement(895464..896135) /gene="glnP" /locus_tag="STM0829" /db_xref="GeneID:1252348" CDS complement(895464..896123) /gene="glnP" /locus_tag="STM0829" /note="ABC superfamily (membrane); similar to E. coli glutamine high-affinity transport system; membrane component (AAC73897.1); Blastp hit to AAC73897.1 (219 aa), 96% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="glutamine high-affinity transporter" /protein_id="NP_459806.1" /db_xref="GeneID:1252348" /translation="MQFDWSAIWPAIPLLLEGAKMTLWISVLGLAGGLVIGLAAGFAR TFGGWFANHIALVFIEIIRGTPIVVQVMFIYFALPMAFNDLRIDPFSAAVVTIMINSG AYIAEITRGAVLSIHKGFREAGLALGLSRRETIRHVILPLALRRMLPPLGNQWIISIK DTSLFIVIGVAELTRQGQEIIAGNFRALEIWSAVAVFYLIITLVLSFILRRLERRMKI L" misc_feature complement(895467..896123) /gene="glnP" /locus_tag="STM0829" /note="glutamine ABC transporter permease protein; Reviewed; Region: glnP; PRK09494" /db_xref="CDD:181907" misc_feature complement(order(895503..895508,895515..895520, 895527..895532,895536..895541,895548..895553, 895581..895586,895623..895628,895635..895646, 895665..895667,895674..895679,895719..895721, 895770..895772,895779..895784,895794..895796, 895800..895805,895812..895814,895818..895820, 895824..895829,895899..895901,895905..895910, 895917..895946,895950..895961,895989..895991, 896004..896009,896016..896021)) /gene="glnP" /locus_tag="STM0829" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(895629..895646,895899..895943)) /gene="glnP" /locus_tag="STM0829" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(895551..895553,895581..895583, 895590..895592,895626..895628,895842..895844, 895899..895901)) /gene="glnP" /locus_tag="STM0829" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(895698..895700,895710..895715, 895731..895769)) /gene="glnP" /locus_tag="STM0829" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(895477..895482) /regulatory_class="ribosome_binding_site" /gene="glnP" /locus_tag="STM0829" /note="putative RBS for glnQ; RegulonDB:STMS1H001127" regulatory complement(896130..896135) /regulatory_class="ribosome_binding_site" /gene="glnP" /locus_tag="STM0829" /note="putative RBS for glnP; RegulonDB:STMS1H001128" gene complement(896267..897024) /gene="glnH" /locus_tag="STM0830" /db_xref="GeneID:1252349" CDS complement(896267..897013) /gene="glnH" /locus_tag="STM0830" /note="ABC superfamily (bind_prot); similar to E. coli periplasmic glutamine-binding protein; permease (AAC73898.1); Blastp hit to AAC73898.1 (248 aa), 96% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="glutamine high-affinity transporter" /protein_id="NP_459807.1" /db_xref="GeneID:1252349" /translation="MKSLLKVSLAALTLAFAVSSHAADKKLVVATDTAFVPFEFKQGD KYVGFDVDLWDAIAKELKLDYTLKPMDFSGIIPALQTKNIDLALAGITITDERKKAID FSDGYYKSGLLVMVKANNNDIKSVKDLDGKVVAVKSGTGSVDYAKANIKTKDLRQFPN IDNAYMELGTNRADAVLHDTPNILYFIKTAGNGQFKAVGESLEAQQYGVAFPKGSDEL REKVNGALKTLRENGTYNEIYKKWFGTEPK" misc_feature complement(896270..897013) /gene="glnH" /locus_tag="STM0830" /note="glutamine ABC transporter periplasmic protein; Reviewed; Region: glnH; PRK09495" /db_xref="CDD:236540" misc_feature complement(order(896477..896482,896591..896596, 896603..896605,896723..896725,896738..896740, 896744..896749,896798..896800,896909..896911, 896918..896920)) /gene="glnH" /locus_tag="STM0830" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270216" regulatory complement(897019..897024) /regulatory_class="ribosome_binding_site" /gene="glnH" /locus_tag="STM0830" /note="putative RBS for glnH; RegulonDB:STMS1H001129" protein_bind complement(897123..897131) /note="putative binding site for NR(I), RegulonDB: STMS1H000294" /bound_moiety="NR(I)" protein_bind complement(897132..897145) /note="putative binding site for IHF, RegulonDB: STMS1H000224" /bound_moiety="IHF" protein_bind complement(897140..897155) /note="putative binding site for NR(I), RegulonDB: STMS1H000295" /bound_moiety="NR(I)" protein_bind complement(897169..897185) /note="putative binding site for NR(I), RegulonDB: STMS1H000297" /bound_moiety="NR(I)" protein_bind complement(897181..897195) /note="putative binding site for IHF, RegulonDB: STMS1H000221" /bound_moiety="IHF" protein_bind complement(897243..897259) /note="putative binding site for NR(I), RegulonDB: STMS1H000291" /bound_moiety="NR(I)" gene complement(897490..898127) /gene="dps" /locus_tag="STM0831" /db_xref="GeneID:1252350" CDS complement(897490..897993) /gene="dps" /locus_tag="STM0831" /note="similar to E. coli global regulator, starvation conditions (AAC73899.1); Blastp hit to AAC73899.1 (167 aa), 95% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="stress response DNA-binding protein; starvation induced resistance to H2O2" /protein_id="NP_459808.1" /db_xref="GeneID:1252350" /translation="MSTAKLVKTKASNLLYTRNDVSESDKKATVELLNRQVIQFIDLS LITKQAHWNMRGANFIAVHEMLDGFRTALTDHLDTMAERAVQLGGVALGTTQVINSKT PLKSYPLDIHNVQDHLKELADRYAVVANDVRKAIGEAKDEDTADIFTAASRDLDKFLW FIESNIE" misc_feature complement(897493..897975) /gene="dps" /locus_tag="STM0831" /note="DNA starvation/stationary phase protection protein Dps; Provisional; Region: PRK09448" /db_xref="CDD:236521" misc_feature complement(order(897748..897753,897760..897762, 897772..897774,897805..897807,897838..897843, 897847..897849,897859..897864)) /gene="dps" /locus_tag="STM0831" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153102" misc_feature complement(order(897748..897750,897760..897762, 897793..897795,897805..897807,897841..897843)) /gene="dps" /locus_tag="STM0831" /note="DPS ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153102" misc_feature complement(order(897544..897549,897568..897570)) /gene="dps" /locus_tag="STM0831" /note="ion pore [active]" /db_xref="CDD:153102" regulatory complement(898002..898007) /regulatory_class="ribosome_binding_site" /gene="dps" /locus_tag="STM0831" /note="putative RBS for dps; RegulonDB:STMS1H001130" regulatory complement(898100..898108) /regulatory_class="minus_10_signal" /gene="dps" /locus_tag="STM0831" /note="putative -10_signal for dps; RegulonDB:STMLTH004707" regulatory complement(898119..898127) /regulatory_class="minus_35_signal" /gene="dps" /locus_tag="STM0831" /note="putative -35_signal for dps; RegulonDB:STMLTH004707" protein_bind complement(898121..898135) /note="putative binding site for IHF, RegulonDB: STMS1H000230" /bound_moiety="IHF" gene complement(898296..899194) /gene="ybiF" /locus_tag="STM0832" /db_xref="GeneID:1252351" CDS complement(898296..899183) /gene="ybiF" /locus_tag="STM0832" /note="hypothetical protein in dps-ompX intergenic region. (SW:YBIF_SALTY)" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_459809.1" /db_xref="GeneID:1252351" /translation="MPGSTRKLPVWLPILVLLIAMSSIQSGASLAKSLFPLVGAPGVT ALRLALGTLILIAFFKPWRLRFAKEQRLPLLFYGLSLGGMNYLFYLSIQTVPLGIAVA LEFTGPLAVALFSSRRPVDFIWVVLAVLGLWFLLPLGQDMSHVDLTGAALALGAGACW AVYILTGQRAGAEHGPATVAVGSLIAAIIFVPIGAVQAGDALWHWSILPLGLAVAVLS TALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTGIQILALCAIIAAS MGSTLTIRREPQIKQVDVK" misc_feature complement(898305..899183) /gene="ybiF" /locus_tag="STM0832" /note="threonine and homoserine efflux system; Provisional; Region: PRK10532" /db_xref="CDD:182525" regulatory complement(899189..899194) /regulatory_class="ribosome_binding_site" /gene="ybiF" /locus_tag="STM0832" /note="putative RBS for ybiF; RegulonDB:STMS1H001131" gene 899528..900052 /gene="ompX" /locus_tag="STM0833" /db_xref="GeneID:1252352" regulatory 899528..899533 /regulatory_class="ribosome_binding_site" /gene="ompX" /locus_tag="STM0833" /note="putative RBS for ompX; RegulonDB:STMS1H001132" CDS 899537..900052 /gene="ompX" /locus_tag="STM0833" /note="similar to E. coli outer membrane protein X (AAC73901.1); Blastp hit to AAC73901.1 (171 aa), 91% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="outer membrane protease, receptor for phage OX2" /protein_id="NP_459810.1" /db_xref="GeneID:1252352" /translation="MKKIACLSALAAVLAFSAGTAVAATSTVTGGYAQSDAQGVANKM SGFNLKYRYEQDDNPLGVIGSFTYTEKDRTNGAGDYNKGQYYGITAGPAYRLNDWASI YGVVGVGYGKFQTTDYPTYKHDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDV GTWIAGVGYRF" misc_feature 899537..900049 /gene="ompX" /locus_tag="STM0833" /note="outer membrane protein OmpX; Region: ompX; PRK09408" /db_xref="CDD:181828" gene complement(900115..901702) /gene="ybiP" /locus_tag="STM0834" /db_xref="GeneID:1252353" CDS complement(900115..901695) /gene="ybiP" /locus_tag="STM0834" /note="similar to E. coli putative enzyme (AAC73902.1); Blastp hit to AAC73902.1 (527 aa), 84% identity in aa 1 - 526" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_459811.1" /db_xref="GeneID:1252353" /translation="MNSTLIDSLLARRRAVSPWAGLYFLQSLLINLALGYPFSLLYTA AFTCLLLLLWRYLPRGQKALLGICSLVAACYFPFGQAYGAPNFNTLLALHSTNMEESS EILTIFPWYSYLTGLFIFALGIIALRRRKEEARPRWNSLDSLCLLISVAAFFVAPVQN LAWGGVFKVIDTGYPVFRFAKDVIVNNNEVIEEQHRMAQLSGIKDSWTVTAVKPRYHI YVVVIGESARRDAMGAFGGHWDNTPFASHVNGDFFMDYIAASGSTQKSLGLTLNRVVD NKPQYQDNFVTLANRAGFQTWWFSNQGQIGEYDTAIASIAKRADEAHFLKNGDFEADK NTRDEALLTMTAQVLATERTQPQLIVLHLMGSHPQACDRTQGKYATFVQSKETSCYLY TMTQTDDLLRQLYTQLRHSGDSFSLVYFSDHGLAFKERGKAVQYLAHDDKFQQNFQVP FMVLSSDSKAHRIIKARRSANDFLSFFSQWTGISAKEIKNRYRFISEQKAGPVYITNF KLQKVDYNHLGSDIFSLK" misc_feature complement(900244..901053) /gene="ybiP" /locus_tag="STM0834" /note="Lipooligosaccharide Phosphoethanolamine Transferase A (LptA) or Lipid A Phosphoethanolamine Transferase; Region: LptA; cd16017" /db_xref="CDD:293741" misc_feature complement(order(900379..900381,900427..900432, 900595..900597,900907..900909,901021..901023)) /gene="ybiP" /locus_tag="STM0834" /note="putative active site [active]" /db_xref="CDD:293741" misc_feature complement(order(900427..900429,900595..900597, 900907..900909,901021..901023)) /gene="ybiP" /locus_tag="STM0834" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:293741" misc_feature complement(order(900376..900384,900787..900789, 900826..900828)) /gene="ybiP" /locus_tag="STM0834" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:293741" regulatory complement(901697..901702) /regulatory_class="ribosome_binding_site" /gene="ybiP" /locus_tag="STM0834" /note="putative RBS for ybiP; RegulonDB:STMS1H001133" gene 902263..902747 /locus_tag="STM0835" /db_xref="GeneID:1252354" regulatory 902263..902268 /regulatory_class="ribosome_binding_site" /locus_tag="STM0835" /note="putative RBS for STM0835; RegulonDB:STMS1H001134" CDS 902274..902747 /locus_tag="STM0835" /note="similar to E. coli putative toxin (AAC73904.1); Blastp hit to AAC73904.1 (155 aa), 92% identity in aa 1 - 153" /codon_start=1 /transl_table=11 /product="putative Mn-dependent transcriptional regulator" /protein_id="NP_459812.1" /db_xref="GeneID:1252354" /translation="MGRRAGTPTTKKVTQLVNVEEHVEGFRQVREAHRRELIDDYVEL ISDLIIEVGEARQVDMAARLGVSQPTVAKMLKRLASLGFIQMIPWRGVFLTPEGEKLA QESRERHQIVENFLLVLGVSPEIARRDAEGMEHHVSQETLDAFLAFTQQHGTSAE" misc_feature 902283..902738 /locus_tag="STM0835" /note="manganese-binding transcriptional regulator MntR; Region: PRK11050" /db_xref="CDD:182927" gene 902728..903856 /gene="ybiR" /locus_tag="STM0836" /db_xref="GeneID:1252355" regulatory 902728..902733 /regulatory_class="ribosome_binding_site" /locus_tag="STM0835" /note="putative RBS for ybiR; RegulonDB:STMS1H001135" CDS 902744..903856 /gene="ybiR" /locus_tag="STM0836" /note="similar to E. coli orf, hypothetical protein (AAC73905.1); Blastp hit to AAC73905.1 (372 aa), 83% identity in aa 1 - 370" /codon_start=1 /transl_table=11 /product="putative di- and tricarboxylate transporters" /protein_id="NP_459813.1" /db_xref="GeneID:1252355" /translation="MSLAFLRALRRDRFFQLLIIVGMALSLFVPFAPRAWPGAIDWHT IITLSGLMLLTKGVELSGYFDVLGRKMTRRFHTERQLAMFLVLAAAALSTFLTNDVAL FIVVPLTITLKKLCAIPVNRLIIFEALAVNAGSLLTPVGNPQNILLWGRSGLTFAEFS GQMAPLAVMMMLTLLLLCWFCFPGRALQYHTGTRSPQWQPRLVWSCLALYVVFLTALE LRQELWGLVLVAAGFIVLARRVIVSVDWTLLLVFMAMFIDVHLLTQLPALQGVFNQVG ALSHLGLWLTAIGLSQIISNVPSTILLLNYVPASTLLAWAVNIGGFGLLPGSLANLIA LRMANDRRIWWRFHFYSLPMLAWAALVGYGLLQLMP" misc_feature 902768..903841 /gene="ybiR" /locus_tag="STM0836" /note="Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate...; Region: YbiR_permease; cd01117" /db_xref="CDD:238537" misc_feature order(902780..902821,902867..902920,902987..903037, 903041..903094,903104..903175,903239..903283, 903353..903391,903407..903451,903473..903529, 903578..903625,903677..903730,903797..903835) /gene="ybiR" /locus_tag="STM0836" /note="transmembrane helices; other site" /db_xref="CDD:238537" gene complement(903900..904836) /gene="ybiS" /locus_tag="STM0837" /db_xref="GeneID:1252356" CDS complement(903900..904820) /gene="ybiS" /locus_tag="STM0837" /note="similar to E. coli orf, hypothetical protein (AAC73906.1); Blastp hit to AAC73906.1 (306 aa), 92% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459814.1" /db_xref="GeneID:1252356" /translation="MNMKLTTLFAAAFAVVGFCKTASAVTYPLPTDGSRLIGQNQVIT VPEGNTQPLEYFAAEYQMGLSNMLEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGII INSAEMRLYYYPKGTNTVIVLPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAE YRAAGEPLPAVVPAGPDNPMGLYALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNDDI KFLFENVPVGTRVQFIDEPVKATTEPDGSRYIEVHNPLSTTEAQFEGKEAVPITLNKS ILAVTNEPDVDQTVVQQAVQDRSGMPVRLN" misc_feature complement(903903..904820) /gene="ybiS" /locus_tag="STM0837" /note="L,D-transpeptidase; Provisional; Region: PRK10260" /db_xref="CDD:182341" regulatory complement(904831..904836) /regulatory_class="ribosome_binding_site" /gene="ybiS" /locus_tag="STM0837" /note="putative RBS for ybiS; RegulonDB:STMS1H001136" gene 905027..906631 /gene="ybiT" /locus_tag="STM0838" /db_xref="GeneID:1252357" regulatory 905027..905032 /regulatory_class="ribosome_binding_site" /gene="ybiT" /locus_tag="STM0838" /note="putative RBS for ybiT; RegulonDB:STMS1H001137" CDS 905039..906631 /gene="ybiT" /locus_tag="STM0838" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73907.1); Blastp hit to AAC73907.1 (530 aa), 96% identity in aa 1 - 530" /codon_start=1 /transl_table=11 /product="putative ATPase component of ABC transporter with duplicated ATPase domain" /protein_id="NP_459815.1" /db_xref="GeneID:1252357" /translation="MLVSSNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM KILGGDLEPTLGNVSLDPNERIGKLRQDQFAFETFTVLDTVIMGHGELWEVKQERDRI YALPEMSEEDGYKVADLEVKYGEMDGYSAEARAGELLLGVGIPLEQHYGLMSEVAPGW KLRVLLAQALFSNPDILLLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMV CTHMADLDYGDLRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANA SKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKLFRNALEVEALTKGFDNGPL FKNVNLLLEVGEKLAVLGTNGVGKSTLLKTLVGDLDADHGTVKWSENARIGYYAQDHE YEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFG KLMMQKPNILIMDEPTNHLDMESIESLNMALELYQGTLIFVSHDREFVSSLATRVIEI TPERVVDFSGNYDDYLRSKGIE" misc_feature 905039..906628 /gene="ybiT" /locus_tag="STM0838" /note="ABC transporter ATP-binding protein; Provisional; Region: PRK15064" /db_xref="CDD:237894" gene 907240..907983 /locus_tag="STM0839" /db_xref="GeneID:1252358" CDS 907240..907983 /locus_tag="STM0839" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459816.1" /db_xref="GeneID:1252358" /translation="MLRNYHSSMKQATCELVPELDFFGLAGWGKHVISMVGFKTPYPQ ESIEQCVAPAHYPQEVKEQVRATSANIILYYKGYDTSPLEQYVALAVVAGALSNMGAV AVLNESAHTSLPAGVFKSQELGKHSLEMLREGFPLTSLFCGFVKYEVEDIEGVWMRTY GADCFGLPDFAAHAQGHHEGQKYSDIFNNVLRYLLESGAEMAAGHTMQVGKTTFMKLR DPLDDEYYLQGPGTTLVVELIEEDECNAH" misc_feature 907711..907950 /locus_tag="STM0839" /note="Domain of unknown function (DUF4261); Region: DUF4261; pfam14080" /db_xref="CDD:464083" gene complement(908012..908739) /gene="ybiV(2)" /locus_tag="STM0840" /db_xref="GeneID:1252359" CDS complement(908012..908731) /gene="ybiV(2)" /locus_tag="STM0840" /note="similar to E. coli orf, hypothetical protein (AAC73909.1); Blastp hit to AAC73909.1 (271 aa), 94% identity in aa 33 - 269" /codon_start=1 /transl_table=11 /product="putative hydrolase of the HAD superfamily" /protein_id="NP_459817.1" /db_xref="GeneID:1252359" /translation="MKKRGIEFVVASGNQYYQLISFFPELKDAISFVAENGALVYEHG KQLFHGELTRHESRIIIGELLKDKQLNFVACGLQSAYVSENAPEAFVTLMAKHYHRLK PVKDYQEIDDVLFKFSLNLPDEQIPLVIDKLHVTLDGIMKPVTSGFGFIDLIIPGLHK ANGISRLLKRWDLPPQNMVAIGDSGNDAEMLKMAHYSFAMDNAAENIKQIARYATDNN KHEGALNVIQAVLENKVPFTL" misc_feature complement(908048..908731) /gene="ybiV(2)" /locus_tag="STM0840" /note="Escherichia coli YbiV sugar phosphatase/phosphotransferase and related proteins; belongs to the haloacid dehalogenase-like superfamily; Region: HAD_YbiV-Like; cd07518" /db_xref="CDD:319820" regulatory complement(908734..908739) /regulatory_class="ribosome_binding_site" /gene="ybiV(2)" /locus_tag="STM0840" /note="putative RBS for ybiV(2); RegulonDB:STMS1H001138" gene complement(908936..910210) /gene="ybiU" /locus_tag="STM0841" /db_xref="GeneID:1252360" CDS complement(908936..910201) /gene="ybiU" /locus_tag="STM0841" /note="similar to E. coli orf, hypothetical protein (AAC73908.1); Blastp hit to AAC73908.1 (421 aa), 85% identity in aa 1 - 421" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459818.1" /db_xref="GeneID:1252360" /translation="MTTPFTHETLPADPKAAIRQMKQALRAQIGDVQAVFDRLSATIA ARVAEINDLKAQGQPVWPIIPFSELAMGNISDATRAEVKRRGCAVIKGHFPREQALAW DQSMLDYLDKNHFDEVYKGPGDNFFGTLSASRPEIYPVYWSQAQMQARQSEEMALAQS FLNRLWQVEHDGKRWFNPDISIIYPDRIRRRPPGTTSKGLGAHTDSGALERWLLPAYQ QVFASVFNGNVEQYDPWNAAHRTDVEEYTVDNTTKCSVFRTFQGWTALSDMLPGQGLL HVVPIPEAMAYILLRPLLDDVPEDELCGVAPGRVLPISEQWHPLLMAALTSIPPLEAG DSVWWHCDVIHSVAPVENQQGWGNVMYIPAAPMCEKNLAYARKVKAALETGASPGDFP REDYETTWEGRFTLRDLNIHGKRALGIDV" misc_feature complement(908948..910156) /gene="ybiU" /locus_tag="STM0841" /note="Protein of unknown function (DUF1479); Region: DUF1479; pfam07350" /db_xref="CDD:399968" regulatory complement(910205..910210) /regulatory_class="ribosome_binding_site" /gene="ybiU" /locus_tag="STM0841" /note="putative RBS for ybiU; RegulonDB:STMS1H001139" gene 910450..911272 /gene="ybiV(1)" /locus_tag="STM0842" /db_xref="GeneID:1252361" regulatory 910450..910455 /regulatory_class="ribosome_binding_site" /gene="ybiV(1)" /locus_tag="STM0842" /note="putative RBS for ybiV(1); RegulonDB:STMS1H001140" CDS 910463..911272 /gene="ybiV(1)" /locus_tag="STM0842" /note="similar to E. coli orf, hypothetical protein (AAC73909.1); Blastp hit to AAC73909.1 (271 aa), 88% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="putative hydrolase of the HAD superfamily" /protein_id="NP_459819.1" /db_xref="GeneID:1252361" /translation="MTVNVVVTDMDGTFLDDAKQYDRVRFMAQYQELKKRNIEFVVAS GNQYYQLISFFPELKDEISFVAENGALVYEHGKQLFHGELTRHESRIVIGELLKDKQL NFVACGLKSAYVSKNAPETFVALMAKHYHRLQPVNDYHDIDDILFKFSLNLPDEQIPL VIDKLHVSLDGIMKPVTSGFGFIDLIIPGLHKANGISRLLKRWNRSPQNVVAIGDSGN DAEMLKMAHYSFAMGNAADNIKALSRYHTDDNNHQGALNVIQAVLDGTDPF" misc_feature 910472..911242 /gene="ybiV(1)" /locus_tag="STM0842" /note="Escherichia coli YbiV sugar phosphatase/phosphotransferase and related proteins; belongs to the haloacid dehalogenase-like superfamily; Region: HAD_YbiV-Like; cd07518" /db_xref="CDD:319820" misc_feature order(910487..910501,910592..910600,910661..910663, 910904..910906,910910..910912,911012..911014, 911036..911038,911102..911110,911114..911119) /gene="ybiV(1)" /locus_tag="STM0842" /note="active site" /db_xref="CDD:319820" gene complement(911350..913795) /gene="pflF" /locus_tag="STM0843" /db_xref="GeneID:1252362" CDS complement(911350..913782) /gene="pflF" /locus_tag="STM0843" /EC_number="2.3.1.54" /note="similar to E. coli putative formate acetyltransferase (AAC73910.1); Blastp hit to AAC73910.1 (810 aa), 95% identity in aa 1 - 810" /codon_start=1 /transl_table=11 /product="putative pyruvate formate lyase" /protein_id="NP_459820.1" /db_xref="GeneID:1252362" /translation="MTQLKLDTLSDRIKAHKTALVHIVKPPVCTERAQHYTEMYQQHL DKPIPVRRALALAHHLAERTIWIKHDELIVGNQASEVRAAPIFPEYTVSWIEKEIDDL ADRPGAGFSVSEENKRILHDVCPWWRGQTVQDRCYGMFTDEQKGLLATGIIKAEGNMT SGDAHLAVNFPLLLEKGLYGLRDKVAERRSRINLTVLEDLHGEQFLKAIDIVLDAVSQ HITRFAALARQMAGEESRESRRKELLTIAENCEVIAHQPPQTFWQALQLCYFIQLILQ IESNGHSVSFGRMDQYLYPYYRRDVELNQTLDREHAIELLHSCWLKLLEVNKIRSGSH SKASAGSPLYQNVTIGGQKLINGQPMDAVNPLSYAILESCGRLRSTQPNLSVRYHAGM SNDFLDACVQVIRCGFGMPAFNNDEIVIPEFIKLGIEPQDAYDYAAIGCIETAVGGKW GYRCTGMSFINFARVMLAALEGGRDATSGKVFLPQEKALSAGNFNNFDEVMAAWDTQI RYYTRKSIEIEYVVDTMLEENVHDILCSALVDDCIERAKSIKQGGAKYDWVSGLQVGI ANLGNSLAAVKKLVFEQGVIGQQQLAAALADDFDGLTHEQLRQRLINGAPKYGNDDDT VDTLLARAYQTYIDELKQYHNPRYGRGPVGGNYYAGTSSISANVPFGAATMATPDGRK AHTPLAEGASPASGTDHLGPTAVIGSVGKLPTGSILGGVLLNQKLNPTTLENESDKQK LMVLLRTFFEVHKGWHIQYNIVSRETLLDAKKHPDQYRDLVVRVAGYSAFFTALSPDA QDDIIARTEHML" misc_feature complement(911353..913761) /gene="pflF" /locus_tag="STM0843" /note="glycyl radical enzyme, PFL2/glycerol dehydratase family; Region: PFL2-3; TIGR01774" /db_xref="CDD:273798" gene complement(913788..914697) /gene="pflE" /locus_tag="STM0844" /db_xref="GeneID:1252363" CDS complement(913788..914687) /gene="pflE" /locus_tag="STM0844" /EC_number="1.97.1.4" /note="similar to E. coli putative pyruvate formate-lyase 2 activating enzyme (AAC73911.1); Blastp hit to AAC73911.1 (308 aa), 87% identity in aa 10 - 308" /codon_start=1 /transl_table=11 /product="putative pyruvate formate lyase activating enzyme" /protein_id="NP_459821.1" /db_xref="GeneID:1252363" /translation="MIFNIQRYSTHDGPGIRTVVFLKGCSLGCRWCQNPESRARAQDL LYDARLCLEGCDLCAQAAPDVIERALNGLLIHREKLTDAHFSILAHCCPTQALTVCGE IKSVDEIMATVLRDKPFYDRSGGGLTLSGGEPFMQPELAAELFKASHDAGIHTAVETC LHVPWKYIAPSLPYIDLFLADLKHVADGPFKQWTDGSASRVLENLRKLAAAGKKMVIR VPLIQGFNADEEAIKAITDFAADELHVGEIHFLPYHTLGINKYHLLSQPYHAPDKPLD APALLDFAQKYACQKGLTATLRG" misc_feature complement(913812..914684) /gene="pflE" /locus_tag="STM0844" /note="glycyl-radical enzyme activating protein; Region: PFLE_PFLC; TIGR02494" /db_xref="CDD:274163" regulatory complement(913790..913795) /regulatory_class="ribosome_binding_site" /gene="pflE" /locus_tag="STM0844" /note="putative RBS for pflF; RegulonDB:STMS1H001141" regulatory complement(914692..914697) /regulatory_class="ribosome_binding_site" /gene="pflE" /locus_tag="STM0844" /note="putative RBS for pflE; RegulonDB:STMS1H001142" gene complement(914965..915727) /gene="moeB" /locus_tag="STM0845" /db_xref="GeneID:1252364" CDS complement(914965..915714) /gene="moeB" /locus_tag="STM0845" /note="molybdopterin biosynthesis MOEB protein. (SW:MOEB_SALTY)" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis" /protein_id="NP_459822.1" /db_xref="GeneID:1252364" /translation="MAELSDQEMLRYNRQIILRGFDFEGQEALKDARVLVVGLGGLGC AATQYLAGAGVGQLTLLDFDTVSVSNLQRQTLHSDATVGQPKVESARDALARINPHIT ITPVNARLDDDAMTSLIAGHSLVLDCTDNVSVRNQLNAGCYTAKVPLISGAAIRMEGQ VTVFTYRENEPCYRCLSRLFGENALTCVEAGVMAPLIGVIGSLQAMEAIKLLAHYGQP ASGKIVMYDAMTCQFREMKLMRNPGCEVCGQ" misc_feature complement(914983..915714) /gene="moeB" /locus_tag="STM0845" /note="molybdopterin biosynthesis protein MoeB; Provisional; Region: PRK05690" /db_xref="CDD:180204" gene complement(915714..916962) /gene="moeA" /locus_tag="STM0846" /db_xref="GeneID:1252365" CDS complement(915714..916955) /gene="moeA" /locus_tag="STM0846" /note="molybdopterin biosynthesis MEOA protein. (SW:MOEA_SALTY)" /codon_start=1 /transl_table=11 /product="molybdopterin biosynthesis protein" /protein_id="NP_459823.3" /db_xref="GeneID:1252365" /translation="MFMEFSAGLMPLETALTQMLSRITPLTAVETLPLVNCFGRILAT DIVSPLDVPGFDNSAMDGYAVRVADLSADKPLPVAGKAFAGQPYQGEWPAGTCIRIMT GAPVPAGCEAVVMQEQTEQTDDGVRFTADVRCGQNIRRRGEDIRQDAVVFPAGTRLTT AELPVLASLGIADAQVVRKVRVALFSTGDELQLPGQPLEAGQIYDTNRLTIHLMLQQL GCEVINLGIIPDDPGKLRAAFIDADSQADVVISSGGVSVGEADYTKTILEELGEIAFW KLAIKPGKPFAFGKLSNSWFCGLPGNPVSAALTFYQLVQPLLAKLGGNTASAVPPRQR VRTASRLKKTPGRLDFQRGILQRSANGELEVTTTGHQGSHIFSSFSLGNCFIVLERER GNVEPGEWVEVEPFNALFGGL" misc_feature complement(915717..916949) /gene="moeA" /locus_tag="STM0846" /note="molybdopterin biosynthesis protein MoeA; Provisional; Region: PRK10680" /db_xref="CDD:182643" regulatory complement(915722..915727) /regulatory_class="ribosome_binding_site" /gene="moeB" /locus_tag="STM0845" /note="putative RBS for moeB; RegulonDB:STMS1H001143" regulatory complement(916957..916962) /regulatory_class="ribosome_binding_site" /gene="moeA" /locus_tag="STM0846" /note="putative RBS for moeA; RegulonDB:STMS1H001144" gene 917139..918093 /gene="ybiK" /locus_tag="STM0847" /db_xref="GeneID:1252366" regulatory 917139..917144 /regulatory_class="ribosome_binding_site" /gene="ybiK" /locus_tag="STM0847" /note="putative RBS for ybiK; RegulonDB:STMS1H001145" CDS 917152..918093 /gene="ybiK" /locus_tag="STM0847" /EC_number="3.5.1.1" /note="similar to E. coli putative asparaginase (AAC73915.1); Blastp hit to AAC73915.1 (321 aa), 88% identity in aa 1 - 313" /codon_start=1 /transl_table=11 /product="putative asparaginase" /protein_id="NP_459824.1" /db_xref="GeneID:1252366" /translation="MNKAVIAIHGGAGAIARAQMSHEQELRYIQALSEIVESGQKMLE AGDSALDVVTEAVRLLEACPLFNAGIGAVYTRDGTHELDACVMDGNTLKAGAVAGVSH VRHPVLAARLVMERSPHVLMVGEGAENFAFSQGMARVSPDIFSTPARYEQLLAARAAG EMALDHSGAPLDETKKMGTVGAVARDKFGNLAAATSTGGMTNKLPGRVGDSPLVGAGC YANNASVAVSCTGTGEVFIRTLAAYDIAALMEYGGLSLADACERVVMEKLPALGGSGG LIAVDHEGNVALPFNSEGMYRAWGYAGDTPTTGIYRE" misc_feature 917152..918090 /gene="ybiK" /locus_tag="STM0847" /note="isoaspartyl peptidase; Provisional; Region: PRK10226" /db_xref="CDD:182319" gene 918092..919975 /gene="yliA" /locus_tag="STM0848" /db_xref="GeneID:1252367" regulatory 918092..918097 /regulatory_class="ribosome_binding_site" /gene="yliA" /locus_tag="STM0848" /note="putative RBS for yliA; RegulonDB:STMS1H001146" CDS 918104..919975 /gene="yliA" /locus_tag="STM0848" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73916.1); Blastp hit to AAC73916.1 (612 aa), 84% identity in aa 1 - 611" /codon_start=1 /transl_table=11 /product="putative ATPase components of ABC-type transport system, containing duplicated ATPase domain" /protein_id="NP_459825.1" /db_xref="GeneID:1252367" /translation="MPHSDELDSRDVLSVSGLNIAFHHEGQQVDAVRNVSLRLKRGET LAIVGESGSGKSVTALALMRLIEQSGANVRCGEMLLRRRNRQVIELSEQSDAQMRRVR GADIAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASHEEALAEAKRMLDQVRIPESQA ILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQQEM SMGVIFITHDMGVVADIADRVLVMYQGEAVETGSVEQIFHAPTHPYTQTLLAAVPQLG AMRGHSLPRRFPLISADEPALYESQIEQDTVVEGEPILQVRGLVTRFPLRSGLFNRVT REVHAVENISFDLWPGETLSLVGESGSGKSTTGRALLRLVESRQGEIIFNGQRIDTLS AGKLQPLRRDIQCIFQDPYASLDPRQTVGYSIMEPLRIHGLGQGDAAAKRVAWLLERV GLRPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSVRGQIINLLLD LQREMGIAYLFISHDMAVVERISHRVAVMYLGQIVEMGPRRAVFENPQHPYTRKLMAA VPVADPSRHRPRRVLLSDDIPSNIHKRGEETPAVSLQLVGPGHYVARPLQDNALSRL" misc_feature 918104..919972 /gene="yliA" /locus_tag="STM0848" /note="glutathione transporter ATP-binding protein; Provisional; Region: PRK10261" /db_xref="CDD:182342" gene 919996..921546 /gene="yliB" /locus_tag="STM0849" /db_xref="GeneID:1252368" regulatory 919996..920001 /regulatory_class="ribosome_binding_site" /gene="yliB" /locus_tag="STM0849" /note="putative RBS for yliB; RegulonDB:STMS1H001147" CDS 920008..921546 /gene="yliB" /locus_tag="STM0849" /note="similar to E. coli putative transport protein (AAC73917.1); Blastp hit to AAC73917.1 (512 aa), 88% identity in aa 1 - 512" /codon_start=1 /transl_table=11 /product="putative ABC transporter periplasmic binding protein" /protein_id="NP_459826.1" /db_xref="GeneID:1252368" /translation="MTQFITHKWLAALGLASSIAAFPALAAKDVVVAVGSNFTTLDPY DANDTLSQAVAKSFYQGLFGLDKDMKVKNVLAEGYTVSDDGLTYTITLRQGVKFQDGA DFNAAAVKANLDRASNPDNHLKRYNLYKNIAKTEVVDPATVKITLKQPFSAFINILAH PATAMISPQALEKYGKDIGFHPVGTGPYQLETWNQTDFVKVKKFAGYWQQGLPKLDSI TWRPVTDNNTRAAMLQTGEAQFAFPIPYEQAALLAKNKNLELVASPSIMQRYISMNVT QKPFDNPKVREALNYAINRQALVKVAFAGYATPATGVVPPSIAYAQSYQPWPYDPAKA RELLKEAGYPDGFSTTLWSSHNHSTAQKVLQFTQQQLAQIGVKARITAMDAGQRAAEV EGKGQKESGVRMFYTGWSASTGEADWALSPLFASQNWPPTQFNTAFYSNKQVDSDLAA ALKTNDPQEKTRLYKEAQDIIWKESPWIPLVVEKLVSAHSKNLTGFWIMPDTGFSFDD ADLK" misc_feature 920008..921543 /gene="yliB" /locus_tag="STM0849" /note="glutathione ABC transporter substrate-binding protein GsiB; Provisional; Region: PRK15413" /db_xref="CDD:185311" gene 921595..922527 /gene="yliC" /locus_tag="STM0850" /db_xref="GeneID:1252369" regulatory 921595..921600 /regulatory_class="ribosome_binding_site" /gene="yliC" /locus_tag="STM0850" /note="putative RBS for yliC; RegulonDB:STMS1H001148" CDS 921607..922527 /gene="yliC" /locus_tag="STM0850" /note="similar to E. coli putative transport system permease protein (AAC73918.1); Blastp hit to AAC73918.1 (306 aa), 90% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="putative ABC transporter periplasmic binding protein" /protein_id="NP_459827.1" /db_xref="GeneID:1252369" /translation="MLNYVLKRLLGLIPTLLIVAVLVFLFVHLLPGDPARLIAGPEAD AQVIALVRQQLGLDQPLHVQFWHYITHVLQGDFGTSMVSRRPVSEEIASRFLPTLWLT ITSMIWAVLFGMAIGIAAAVWRNRWPDRLGMTLAVTGISFPAFALGMLLMQIFSVDLG WLPTVGADSWQHYILPSLTLGAAVASVMARFTRSSFVDVLSEDYMRTARAKGVSETWV VLKHGLRNAMIPVVTMMGLQFGFLLGGSIVVEKVFNWPGLGRLLVDSVDMRDYPVIQA EVLLFSLEFILINLVVDVLYAAINPAIRYK" misc_feature 921607..922524 /gene="yliC" /locus_tag="STM0850" /note="glutathione ABC transporter permease GsiC; Provisional; Region: PRK15081" /db_xref="CDD:185039" gene 922515..923441 /gene="yliD" /locus_tag="STM0851" /db_xref="GeneID:1252370" regulatory 922515..922520 /regulatory_class="ribosome_binding_site" /gene="yliD" /locus_tag="STM0851" /note="putative RBS for yliD; RegulonDB:STMS1H001149" CDS 922530..923441 /gene="yliD" /locus_tag="STM0851" /note="similar to E. coli putative transport system permease protein (AAC73919.1); Blastp hit to AAC73919.1 (303 aa), 91% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="putative ABC transporter inner membrane component" /protein_id="NP_459828.1" /db_xref="GeneID:1252370" /translation="MRLFNWRRQAILHAMPVVKPDQIRTPWREFWRRFRRQHVALVAG GFVLALILVAIFARWLTPYDAENYFDYDSLNNGPSLQHWFGVDSLGRDIFSRVLVGAQ ISLAAGVFAVFIGAIIGTVLGLLAGYYEGWWDRFIMRICDVLFAFPGILLAIAVVAVL GSGIANVIVAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDTTILFSHILPGT VSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVIAPHVALFPA VAIFLTVLAFNLLGDGLRDALDPKIKG" misc_feature 922536..923438 /gene="yliD" /locus_tag="STM0851" /note="glutathione ABC transporter permease GsiD; Provisional; Region: PRK15082" /db_xref="CDD:185040" gene complement(923532..924857) /gene="yliG" /locus_tag="STM0852" /db_xref="GeneID:1252371" CDS complement(923532..924857) /gene="yliG" /locus_tag="STM0852" /note="similar to E. coli orf, hypothetical protein (AAC73922.1); Blastp hit to AAC73922.1 (441 aa), 97% identity in aa 1 - 441" /codon_start=1 /transl_table=11 /product="putative Fe-S oxidoreductases family 1" /protein_id="NP_459829.1" /db_xref="GeneID:1252371" /translation="MSNVTHQPKIGFVSLGCPKNLVDSERILTELRTEGYDVVPRYDD ADMVIVNTCGFIDSAVQESLEAIGEALNENGKVIVTGCLGAKEDQIREVHPKVLEITG PHSYEQVLQHVHHYVPKPKHNPFLSLVPEQGVKLTPRHYAYLKISEGCNHRCTFCIIP SMRGDLVSRPIGDVLSEAKRLVDAGVKEILVISQDTSAYGVDVKHRTGFHNGEPVKTS MVSLCEQLSKLGVWTRLHYVYPYPHVDDVIPLMAEGKILPYLDIPLQHASPRILKLMK RPGSVDRQLARIKQWREICPELTLRSTFIVGFPGETEEDFQMLLDFLKEARLDRVGCF KYSPVEGAGANELPDQVPEEVKEERWNRFMQLQQQISAERLQEKVGREILVIVDEVDE EGAIGRSMADAPEIDGAVYLNGETNVKPGDIVRVKVENADEYDLWGSRV" misc_feature complement(923544..924833) /gene="yliG" /locus_tag="STM0852" /note="ribosomal protein S12 methylthiotransferase RimO; Region: TIGR01125" /db_xref="CDD:273453" gene 925072..925471 /gene="yliH" /locus_tag="STM0853" /db_xref="GeneID:1252372" regulatory 925072..925077 /regulatory_class="ribosome_binding_site" /gene="yliH" /locus_tag="STM0853" /note="putative RBS for yliH; RegulonDB:STMS1H001150" CDS 925088..925471 /gene="yliH" /locus_tag="STM0853" /note="similar to E. coli putative receptor (AAC73923.1); Blastp hit to AAC73923.1 (127 aa), 78% identity in aa 1 - 124" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459830.1" /db_xref="GeneID:1252372" /translation="MVVDRLRTDLLNKLINARIDLAAYLQLRKAKGYMSVSESDTLRD NFFELNRELHDHALRQGLHLDQEEWNALRRAEGALAAAAVCLMSGHHDCPTFIAVNAD KLENCLTTLTLSIQSLKAHSPLTQV" misc_feature 925088..925468 /gene="yliH" /locus_tag="STM0853" /note="biofilm formation regulator BssR; Region: bssR; PRK12302" /db_xref="CDD:183420" gene 926180..926699 /locus_tag="STM0854" /db_xref="GeneID:1252373" regulatory 926180..926185 /regulatory_class="ribosome_binding_site" /locus_tag="STM0854" /note="putative RBS for STM0854; RegulonDB:STMS1H001151" CDS 926184..926699 /locus_tag="STM0854" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459831.1" /db_xref="GeneID:1252373" /translation="MQTLERFFLFVTGDQPERFEKANSSCADSVILDLENAVSSEKKI IARENALNFMSNDEKVLIAVRAKIVITSRLAGSYPSVDGITTEFMKNELTIQNAIHSC KMGFSGKVCIHPPQISHVNRAFSYLKQEIEWVPQIMRLAQYPHGAFSHEGQMVDKPLL EKAKRILAHSI" misc_feature 926184..926687 /locus_tag="STM0854" /note="Citrate lyase beta subunit [Carbohydrate transport and metabolism]; Region: CitE; cl46074" /db_xref="CDD:480414" gene 926613..927471 /locus_tag="STM0855" /db_xref="GeneID:1252374" regulatory 926613..926618 /regulatory_class="ribosome_binding_site" /locus_tag="STM0854" /note="putative RBS for STM0855; RegulonDB:STMS1H001152" CDS 926617..927471 /locus_tag="STM0855" /note="similar to E. coli probable flavoprotein subunit, carnitine metabolism (AAC73152.1); Blastp hit to AAC73152.1 (268 aa), 27% identity in aa 13 - 248" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein beta subunit" /protein_id="NP_459832.3" /db_xref="GeneID:1252374" /translation="MERSVMKGKWWINRYWKKQKGFWLIAFSKYMKESPMKALVCVKQ VVDHNVRIRIKRDHSDVDISDSKLSINPFDEIAVEEAVRLKERGLISEVVVVSIGNTG VGDVLRTALAAGADRAIHILTKNSLTPLIVAKTITAITRNEKPDIILLGKQAIDDDCN QVGQMLAALLDLPQATNVSEITISDNSLTAVREVDGGLETLNLSLPAVLTTDLRLNTP RNISLPNVIKAKKKPVKEIDFDSLGINPSSRLTIIKVDEPARRKAGIIVPDINTLLDK LKNEEKVI" misc_feature 926722..927465 /locus_tag="STM0855" /note="Electron transfer flavoprotein, alpha and beta subunits [Energy production and conversion]; Region: FixA; COG2086" /db_xref="CDD:441689" gene 927475..928429 /locus_tag="STM0856" /db_xref="GeneID:1252375" regulatory 927475..927480 /regulatory_class="ribosome_binding_site" /locus_tag="STM0856" /note="putative RBS for STM0856; RegulonDB:STMS1H001153" CDS 927482..928429 /locus_tag="STM0856" /note="similar to E. coli putative flavoprotein (AAC74768.1); Blastp hit to AAC74768.1 (312 aa), 35% identity in aa 65 - 310" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein alpha subunit" /protein_id="NP_459833.1" /db_xref="GeneID:1252375" /translation="MASLVIAEHNGNTLLPSTLSTITAAKAINSDIDILMLGYGIESI AVKASHIQGISTVFVADSPLFEHLLAENVEKQISYFLNSGKNHYQSILFPASSFGKNC APRLAAKLDVSQISDITRVIDQHTFERPIYAGNAIATVHSDDEYKVITVRPTSFAAAV AEDEGKAPIEFTEVVLGSDQVKFISQHVNKSNRPDLQSARVVVSGGRGVGSAQAFKEL VDNLADKLGAAVGASRAAVDAGYAPNDYQIGQTGKIVAPQLYIALGISGAIQHLAGMK ESGVIVAINKDPDAPIFSIADYGLVADIFKAVPELIDKL" misc_feature 927491..928426 /locus_tag="STM0856" /note="Electron transfer flavoprotein, alpha subunit FixB [Energy production and conversion]; Region: FixB; COG2025" /db_xref="CDD:441628" gene 928716..929886 /locus_tag="STM0857" /db_xref="GeneID:1252376" regulatory 928716..928721 /regulatory_class="ribosome_binding_site" /locus_tag="STM0857" /note="putative RBS for STM0857; RegulonDB:STMS1H001154" CDS 928723..929886 /locus_tag="STM0857" /note="similar to E. coli putative oxidoreductase (AAC74765.1); Blastp hit to AAC74765.1 (401 aa), 28% identity in aa 33 - 390" /codon_start=1 /transl_table=11 /product="putative acyl-CoA dehydrogenase" /protein_id="NP_459834.1" /db_xref="GeneID:1252376" /translation="MKSIEKDKYQDIRDAVRSLCSEFDDKYHRKIDEAKAYPEEFVNK LTKAGWLAALIPEEFGGSGLGLTEASIIMEEINRSGGNSGACHGQMYNMNTLLRHGSD KQKEFWLPRIATGEWRLQSMGVTEPTAGTDTTRIKTTAVKREDRYVINGQKVWISRVQ HSDWMILLVRTTPLANVKRKSEGMSIFMVDIKEAMKNGMTVRPIPNMVNHETNELFFD NLEIPEENLIGEEGMGFHYILDGLNAERTLIAAECIGDGYWFMDRVTRYTCEREVFGR PIGQNQGVQFPIAEAFIAVEAANLMRFKACELFDQHLDCGAQANMAKYLAAKASWEAA NACLQFHGGYGFACEYDIERKFRETRLYQVAPISTNLILSYIAEHVLEMPRSF" misc_feature 928741..929877 /locus_tag="STM0857" /note="Acyl-CoA dehydrogenase related to the alkylation response protein AidB [Lipid transport and metabolism]; Region: CaiA; COG1960" /db_xref="CDD:441563" gene 930328..932020 /locus_tag="STM0858" /db_xref="GeneID:1252377" regulatory 930328..930333 /regulatory_class="ribosome_binding_site" /locus_tag="STM0858" /note="putative RBS for STM0858; RegulonDB:STMS1H001155" CDS 930335..932020 /locus_tag="STM0858" /EC_number="1.5.5.1" /note="similar to E. coli flavoprotein; probably electron transport (AAC74769.1); Blastp hit to AAC74769.1 (429 aa), 27% identity in aa 29 - 363, 30% identity in aa 7 - 148" /codon_start=1 /transl_table=11 /product="putative dehydrogenase (flavoproteins)" /protein_id="NP_459835.1" /db_xref="GeneID:1252377" /translation="MNDTLSNTQQSRETIECDVLIVGAGPAGLSAALKLKLQANDAGK ELSIIVLDKGAEPGSHILSGAVMDPRALNELIPDWQERGAPIKQPVTQDKLLLLTNEK CINLPDALIPDNFRNHGNFIVSLGNLIKWLAGQAETSGVDIYAGFSATEILYDQDTNI IGVVTGDMGRHRDGSKKEGFLSGIEILAKYTIFAEGARGSLAKELIKKFHLDTGKAPQ SFSIGIKELWEVPSDQSHPGLVIHTTGWPLDKESFGGGFLYHLNDNKIALGLVVGLDY SNPWLSPFQEMQRLKTHPSIRKYIDRGKRIGYGARAINNGGIASMPDPCLPGGLLIGC NAGTLNASRIKGIHTAIKSGMIAADAIFNALLDNRKNDILTEYQTLLRQSWLWQELEN GSNFKPWFKKGRVIGFIMTGIEHWLLPRMGIKKIPWRVKNNRPDNITLQPANKSQKKL YDKPDGKLTFDILSSVYLSNTWHDDDQPVHLKISDQNIPISINLDIYGGPEERYCPAG VYEFLQDSETQNMRLQINSQNCIHCKVCDIKDPKQNITWTTPEGGNGPNYTGM" misc_feature 930404..931483 /locus_tag="STM0858" /note="Dehydrogenase (flavoprotein) [Energy production and conversion]; Region: FixC; COG0644" /db_xref="CDD:440409" misc_feature 931700..932011 /locus_tag="STM0858" /note="Electron transfer flavoprotein-ubiquinone oxidoreductase, 4Fe-4S; Region: ETF_QO; pfam05187" /db_xref="CDD:461576" gene complement(932026..932916) /locus_tag="STM0859" /db_xref="GeneID:1252378" CDS complement(932026..932916) /locus_tag="STM0859" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74667.1); Blastp hit to AAC74667.1 (297 aa), 28% identity in aa 1 - 264" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_459836.1" /db_xref="GeneID:1252378" /translation="MHFDIKDLKLFLAISEEGSITRGAEKTYMSAASGSVRIRNLEQS INLRLLYRSSKGITLSSAGETFKHHASLIVNQMEMLRSDMQEHVKGIKGHVRIFSSIT AIAEYLPPLLSHFLTLYNDVNIDLREYPSPEIVRSVIEGKTDLGIVAGNITTDNLEIL PFRTDRLVLITATDHPFADRKSVTFHELIQYEQISLPEGTGMFEFIRKKAELVPSKLK IRIQVGNFETFCRMVEAKVGIGIMPHSAASRLRQLHEFSIIDLDEFWSLRKLQICARS FDKLPGFTQKLVTMLTAQTE" misc_feature complement(932725..932904) /locus_tag="STM0859" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature complement(932044..932637) /locus_tag="STM0859" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_1; cd08421" /db_xref="CDD:176113" misc_feature complement(order(932212..932217,932221..932226, 932242..932259,932533..932553,932557..932559, 932569..932571,932578..932583,932587..932592)) /locus_tag="STM0859" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176113" gene complement(933181..933609) /locus_tag="STM0860" /db_xref="GeneID:1252379" CDS complement(933181..933606) /locus_tag="STM0860" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459837.1" /db_xref="GeneID:1252379" /translation="MYSLLMLVAYRGYSVILFAPLVALGAVLFTRPVTVAPVFSDIFM DKLIGFVKLYFPVFLLGAVFGKLIELAGFYYSIVSAVTCMVGQNKAMPMIILVCALLT YGGVSLFVVAFANLFFTWLIPHIYGDQFMINLPGLKKPL" misc_feature complement(<933265..933597) /locus_tag="STM0860" /note="H+/gluconate symporter GntT or related permease, GntP/DsdX family [Carbohydrate transport and metabolism]; Region: GntT; COG2610" /db_xref="CDD:442022" regulatory complement(933604..933609) /regulatory_class="ribosome_binding_site" /locus_tag="STM0860" /note="putative RBS for STM0860; RegulonDB:STMS1H001156" gene 933942..934633 /gene="yliI" /locus_tag="STM0861" /db_xref="GeneID:1252380" regulatory 933942..933947 /regulatory_class="ribosome_binding_site" /gene="yliI" /locus_tag="STM0861" /note="putative RBS for yliI; RegulonDB:STMS1H001157" CDS 933953..934633 /gene="yliI" /locus_tag="STM0861" /note="similar to E. coli putative dehydrogenase (AAC73924.1); Blastp hit to AAC73924.1 (371 aa), 75% identity in aa 197 - 369" /codon_start=1 /transl_table=11 /product="putative dehydrogenase" /protein_id="NP_447297.1" /db_xref="GeneID:1252380" /translation="MAKVDVKCPFCAQTASVKKYGPGSAGHQHYRCQVCCRSFQVDYE YRACQPGMKEQVVDLAMYTAGIRNPQGLAINPWSGALWLHEHGPRGGDEINIPEKGKN YGWPLATWGVNYSGLKVPEAKGEIVEGTAQPVYYWKDSPAISGMAFYASDVFAPWRHK LFIGALKDKEVIVMRVDGNTVTEEGRILGDRKQRIYDVRVGPDGYLYVLTDESDGQLL KVSPAATR" misc_feature 933974..>934153 /gene="yliI" /locus_tag="STM0861" /note="IS1 family transposase; Region: transpos_IS1; NF033558" /db_xref="CDD:468085" misc_feature <934136..934600 /gene="yliI" /locus_tag="STM0861" /note="Glucose / Sorbosone dehydrogenase; Region: GSDH; pfam07995" /db_xref="CDD:429776" gene complement(934630..935267) /gene="yliJ" /locus_tag="STM0862" /db_xref="GeneID:1252381" CDS complement(934630..935256) /gene="yliJ" /locus_tag="STM0862" /note="similar to E. coli putative transferase (AAC73925.1); Blastp hit to AAC73925.1 (210 aa), 82% identity in aa 3 - 210" /codon_start=1 /transl_table=11 /product="putative glutathione S-transferase" /protein_id="NP_459839.1" /db_xref="GeneID:1252381" /translation="MITLWGRNNSTNVKKVLWTLEELELPYDQILAGGKFGVNQDADY LAMNPNGLVPLLKDDETDLLLWESNAIVRYLAAQYGQNRLWVDNPARRAEGEKWMDWA NQTLSPAHRVILMGLVRTPPEKRDQAAIEAGIEKCDSLFALLDDALAHQPWFSGDNFG TGDIAIAPFVYNLLNVGLKWTPRPNLERWYQQLTERPAFRKVVMIPVT" misc_feature complement(934639..935256) /gene="yliJ" /locus_tag="STM0862" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: GstA; COG0625" /db_xref="CDD:440390" regulatory complement(935262..935267) /regulatory_class="ribosome_binding_site" /gene="yliJ" /locus_tag="STM0862" /note="putative RBS for yliJ; RegulonDB:STMS1H001158" gene 935480..936702 /gene="dacC" /locus_tag="STM0863" /db_xref="GeneID:1252382" regulatory 935480..935485 /regulatory_class="ribosome_binding_site" /gene="dacC" /locus_tag="STM0863" /note="putative RBS for dacC; RegulonDB:STMS1H001159" CDS 935500..936702 /gene="dacC" /locus_tag="STM0863" /EC_number="3.4.16.4" /note="similar to E. coli D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6 (AAC73926.1); Blastp hit to AAC73926.1 (400 aa), 92% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a" /protein_id="NP_459840.1" /db_xref="GeneID:1252382" /translation="MTQYASSLRSLAAGSVLLFLFASPVKAEEQTIAPPGVDARAWIL MDYASGKVLAEGNADEKLDPASLTKIMTSYVVGQALKAGKIKLTDMVTVGKDAWATGN PALRGSSVMFLKPGDQVSVADLNKGIIIQSGNDACIALADYVAGSQESFIGLMNAYAK RLGLTNTTFQTVHGLDAPGQFSTARDMALLGKALIHDVPDEYAIHKEKEFTFNNIRQP NRNRLLWSTNLHVDGMKTGTTAGAGYNLVASATQGDMRLISVVLGAKTDRIRFNESEK LLTWGFRFFETVTPIKPDATFVTQRVWFGDKHEVNLGAGDAGSVTIPRGQLKNLKASF TLNEPQLTAPLKKGQVVGTIDFQLNGKSIEQRPLMVMENVEEGGFFSRMWDFVLMKLH QWFGSWFS" misc_feature 935500..936699 /gene="dacC" /locus_tag="STM0863" /note="serine-type D-Ala-D-Ala carboxypeptidase; Region: PRK10001" /db_xref="CDD:182189" gene complement(936747..937515) /gene="deoR" /locus_tag="STM0864" /db_xref="GeneID:1252383" CDS complement(936747..937505) /gene="deoR" /locus_tag="STM0864" /note="similar to E. coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); Blastp hit to AAC73927.1 (252 aa), 83% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="transcriptional repressor for deoxyribose operon (DeoR family)" /protein_id="NP_459841.1" /db_xref="GeneID:1252383" /translation="METRRDERIGQLLQALKRSDKLHLKEAATLLGVSEMTIRRDLNH KSAPVVLLGGYIVLEPRSASHYLLSDQKSRLVEEKRRAAQLAAGLVQAHQTVFIDCGT TTPWIIEAIDNDLPFTAVCYSLNTFLALQDKPHCRAILSGGEFHASNAIFKPLDFHET LNNICPDIAFYSAAGVHTSKGATCFNLEELPVKHWAMTMAQCHVLVVDHSKFGKVRPA RMGELSRFDTIISDRRPDEAFVAYAKAQQITLMY" misc_feature complement(936750..937505) /gene="deoR" /locus_tag="STM0864" /note="DNA-binding transcriptional repressor DeoR; Provisional; Region: PRK10681" /db_xref="CDD:182644" regulatory complement(937510..937515) /regulatory_class="ribosome_binding_site" /gene="deoR" /locus_tag="STM0864" /note="putative RBS for deoR; RegulonDB:STMS1H001160" gene complement(937577..938194) /gene="ybjG" /locus_tag="STM0865" /db_xref="GeneID:1252384" CDS complement(937577..938185) /gene="ybjG" /locus_tag="STM0865" /note="similar to E. coli orf, hypothetical protein (AAC73928.1); Blastp hit to AAC73928.1 (198 aa), 78% identity in aa 1 - 198" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_459842.1" /db_xref="GeneID:1252384" /translation="MLENLNNSLFYFINATPDSAQWIISLAIFIAKDVINIVPLLAVV LWLWGPRDRVCAQRQLIVKIGIALIISLAVSWTMGHLFPHDRPFVDHIGYNFLHHAAD DSFPSDHGTVIFTFALAFLFWHRLWSGIVMMAIAITIAWSRVYLGVHWPLDMIGALLV AMLGCLSAQLIWQWYGAPLYQALQRCYRFCFALPIRKGWVRD" misc_feature complement(937580..938185) /gene="ybjG" /locus_tag="STM0865" /note="undecaprenyl pyrophosphate phosphatase; Provisional; Region: PRK11837" /db_xref="CDD:183335" misc_feature complement(order(937727..937729,937739..937741, 937757..937759,937859..937867,937928..937930)) /gene="ybjG" /locus_tag="STM0865" /note="active site" /db_xref="CDD:239480" regulatory complement(938189..938194) /regulatory_class="ribosome_binding_site" /gene="ybjG" /locus_tag="STM0865" /note="putative RBS for ybjG; RegulonDB:STMS1H001161" gene 938490..939730 /gene="mdfA" /locus_tag="STM0866" /db_xref="GeneID:1252385" regulatory 938490..938495 /regulatory_class="ribosome_binding_site" /gene="mdfA" /locus_tag="STM0866" /note="putative RBS for mdfA; RegulonDB:STMS1H001162" CDS 938498..939730 /gene="mdfA" /locus_tag="STM0866" /note="similar to E. coli proton motive force efflux pump (AAC73929.1); Blastp hit to AAC73929.1 (410 aa), 90% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="multidrug translocase" /protein_id="NP_459843.1" /db_xref="GeneID:1252385" /translation="MQNRLQSGGRLGRQALLFPLCLVLYEFSTYIGNDMIQPGMLAVV EQYQAGLDWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVVWFIVTCLATLLA KNIEQFTFLRFLQGISLCFIGAVGYAAIQESFEEAVCIKITALMANVALIAPLLGPLV GAAWVHVLPWEGMFILFAALAAIAFFGLQRAMTETATRRGETLSFKALGRDYRLVIKN RRFVAGALALGFVSLPLLAWIAQSPIIIISGEQLSSYEYGLLQVPVFGALIAGNLVLA RLTSRRTVRSLIVMGGWPIVAGLIIAAAATVVSSHAYLWMTAGLSVYAFGIGLANAGL VRLTLFSSDMSKGTVSAAMGMLQMLIFTVGIEVSKHAWLSGGNGLFSLFNLANGILWL LLMLVFLKDKRTGNLQTV" misc_feature 938510..939715 /gene="mdfA" /locus_tag="STM0866" /note="MdfA family multidrug efflux MFS transporter; Region: PRK15402" /db_xref="CDD:185300" gene complement(939784..940613) /locus_tag="STM0867" /db_xref="GeneID:1252386" CDS complement(939784..940599) /locus_tag="STM0867" /note="similar to E. coli orf, hypothetical protein (AAC73931.1); Blastp hit to AAC73931.1 (262 aa), 82% identity in aa 1 - 261" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_459844.1" /db_xref="GeneID:1252386" /translation="MSIKLIAVDMDGTFLSDQKTYNRDRFMAQYQQMKRQGIRFVVAS GNQYYQLISFFPEIAHEIAFVAENGGWVVSEGEDIFNGELTKADFQAVVEHLLTRADV EIIACGKNSAYTLKRYDDALKAVAAMYYHRLEFVDNFNNINDVFFKFGLNITDERIPE VQAALHDAIGDIMVPVHTGYGSIDLIIPGVHKANGLRLLQQRWGIHDSEVVVFGDGGN DIEMLRQAGFSFAMSHASEAVAAAAKYRAGSNNQEGVLDIIDSVLNNEPPFNV" misc_feature complement(939820..940590) /locus_tag="STM0867" /note="Escherichia coli YbiV sugar phosphatase/phosphotransferase and related proteins; belongs to the haloacid dehalogenase-like superfamily; Region: HAD_YbiV-Like; cd07518" /db_xref="CDD:319820" misc_feature complement(order(939943..939948,939952..939960, 940024..940026,940048..940050,940150..940152, 940156..940158,940399..940401,940462..940470, 940561..940575)) /locus_tag="STM0867" /note="active site" /db_xref="CDD:319820" gene complement(940596..941820) /locus_tag="STM0868" /db_xref="GeneID:1252387" CDS complement(940596..941807) /locus_tag="STM0868" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC73932.1); Blastp hit to AAC73932.1 (402 aa), 87% identity in aa 1 - 402" /codon_start=1 /transl_table=11 /product="putative transport protein/putative regulator" /protein_id="NP_459845.1" /db_xref="GeneID:1252387" /translation="MTVLSSRNALKRRTWALFMFFFLPGLLMASWATRTPAIRDILSV STAEMGAVLFGLSIGSMSGILCSAWLVKRFGTRKVIRTTMTCAVTGMVILSVALWCAS PLIFALGLAVFGASFGAAEVAINVEGAAVERELNKTVLPMMHGFYSFGTLAGAGVGMA LTALSVPANIHIILAAAVAIAPIFIAIRAIPDGTGKNASEDSHLQEKGLPFYRDIQLL LIGVVVLAMAFAEGSANDWLPLLMVDGHGFSPTSGSLIYAGFTLGMTVGRFTGGWFID RYSRVTVVRASALMGALGIGLIIFVDSDWVAGVSVILWGLGASLGFPLTISAASDTGP DAPTRVSVVATTGYLAFLVGPPLLGYLGEHYGLRSAMMVVLALVILAALVAKAVAKPV STPQPVMEHNA" misc_feature complement(940671..941765) /locus_tag="STM0868" /note="Membrane protein MosC and similar proteins of the Major Facilitator Superfamily of transporters; Region: MFS_MosC_like; cd17393" /db_xref="CDD:340951" misc_feature complement(order(940752..940754,940761..940766, 940773..940778,940785..940787,940830..940832, 940842..940844,940854..940859,941004..941006, 941016..941018,941100..941102,941109..941117, 941124..941129,941136..941138,941355..941357, 941364..941369,941376..941378,941433..941435, 941442..941450,941454..941459,941616..941618, 941712..941714,941721..941726,941733..941738)) /locus_tag="STM0868" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340951" regulatory complement(940608..940613) /regulatory_class="ribosome_binding_site" /locus_tag="STM0867" /note="putative RBS for STM0867; RegulonDB:STMS1H001163" regulatory complement(941815..941820) /regulatory_class="ribosome_binding_site" /locus_tag="STM0868" /note="putative RBS for STM0868; RegulonDB:STMS1H001164" gene 941963..942595 /locus_tag="STM0869" /db_xref="GeneID:1252388" regulatory 941963..941968 /regulatory_class="ribosome_binding_site" /locus_tag="STM0869" /note="putative RBS for STM0869; RegulonDB:STMS1H001165" CDS 941975..942595 /locus_tag="STM0869" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC73933.1); Blastp hit to AAC73933.1 (178 aa), 78% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="putative regulator (TetR/Acr family)" /protein_id="NP_459846.1" /db_xref="GeneID:1252388" /translation="MKENAVRRANDPKRREKIIQATLEAVKTYGVHAVTHRKIAAIAQ VPLGSMTYYFAGMDALLSEAFTLFTENMSRQYQDFFAQVTDAEGACQAITEMIYGSQV TTPDNMALMYQLYAYASDKPALKIVMQNWMQRSQNTLAQWFDAQTARALDAFIEGMTL HFVTDRTPLAREAILQMVKRIAGVSMSCHSALGNKKPTNLEPKWRG" misc_feature 941993..942523 /locus_tag="STM0869" /note="DNA-binding transcriptional regulator YbjK [Transcription]; Region: YbjK; COG3226" /db_xref="CDD:442459" gene complement(942712..944412) /locus_tag="STM0870" /db_xref="GeneID:1252389" CDS complement(942712..944397) /locus_tag="STM0870" /note="similar to E. coli putative transport protein (AAC73934.1); Blastp hit to AAC73934.1 (561 aa), 96% identity in aa 1 - 561" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_459847.1" /db_xref="GeneID:1252389" /translation="MNINVADLLNGNYILLLFVVLALGLCLGKLRLGSVQLGNSIGVL VVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNFFSIFFRDGKNYLMLALVMVGS ALLIALGLGKLFGWDIGLTAGMLAGSMTSTPVLVGAGDTLRHSGIASTQLSSALDNLS LGYALTYLIGLVSLIVGARYLPKLQHQDLQTSAQQIARERGLDTDANRKVYLPVIRAY RVGPELVAWTDGKNLRELGIYRQTGCYIERIRRNGILANPDGDAVLQMGDEIALVGYP DAHARLDPSFRNGKEVFDRDLLDMRIVTEEIVVKNHNAVGRRLAQLKLTDHGCFLNRV IRSQIEMPIDDNVVLNKGDVLQVSGDARRVKTIADRIGFISIHSQVTDLLAFCAFFII GLMIGMITFQFSNFSFGIGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLM VFMAGVGLSAGSGISNGLGAVGGQMLIAGLVVSLVPVVICFLFGAYVLRMNRALLFGA MMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVLLTLAGTLIVIIWPGLG" misc_feature complement(942724..944397) /locus_tag="STM0870" /note="putative transporter; Provisional; Region: PRK04972" /db_xref="CDD:179905" regulatory complement(944407..944412) /regulatory_class="ribosome_binding_site" /locus_tag="STM0870" /note="putative RBS for STM0870; RegulonDB:STMS1H001166" gene 944656..945045 /gene="ybjM" /locus_tag="STM0871" /db_xref="GeneID:1252390" regulatory 944656..944661 /regulatory_class="ribosome_binding_site" /gene="ybjM" /locus_tag="STM0871" /note="putative RBS for ybjM; RegulonDB:STMS1H001167" CDS 944668..945045 /gene="ybjM" /locus_tag="STM0871" /note="similar to E. coli orf, hypothetical protein (AAC73935.1); Blastp hit to AAC73935.1 (125 aa), 72% identity in aa 1 - 125" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459848.1" /db_xref="GeneID:1252390" /translation="MKHKHGWASVVCCFVLFIVVCLSLTMHVQGAFRAAGHPEIGLLF FTLPGAVASFCSHRREVIRPLIGAMLAAPFCLVLMRVVFMPTRSFWQELAWLFSAVFW CALGALCYLFISSLFSHRRKKRR" misc_feature 944674..945018 /gene="ybjM" /locus_tag="STM0871" /note="Putative inner membrane protein of Enterobacteriaceae; Region: YbjM; pfam11045" /db_xref="CDD:431625" gene complement(945077..945350) /gene="grxA" /locus_tag="STM0872" /db_xref="GeneID:1252391" CDS complement(945077..945340) /gene="grxA" /locus_tag="STM0872" /note="glutaredoxin 1 (GRX1). (SW:GRX1_SALTY)" /codon_start=1 /transl_table=11 /product="redox coenzyme for glutathione-dependent ribonucleotide reductase glutaredoxin1" /protein_id="NP_459849.1" /db_xref="GeneID:1252391" /translation="MFTVIFGRPGCPYCVRAKELAEKLSKERDDFNYRYIDIHAEGIT KADLEKTVGKPVETVPQIFVDQKHIGGCTDFEAWAKENLNLFA" misc_feature complement(945086..945340) /gene="grxA" /locus_tag="STM0872" /note="glutaredoxin 1; Provisional; Region: grxA; PRK11200" /db_xref="CDD:183036" misc_feature complement(order(945164..945169,945302..945310, 945317..945319)) /gene="grxA" /locus_tag="STM0872" /note="GSH binding site [chemical binding]; other site" /db_xref="CDD:239017" misc_feature complement(order(945299..945301,945308..945310)) /gene="grxA" /locus_tag="STM0872" /note="catalytic residues [active]" /db_xref="CDD:239017" regulatory complement(945345..945350) /regulatory_class="ribosome_binding_site" /gene="grxA" /locus_tag="STM0872" /note="putative RBS for grxA; RegulonDB:STMS1H001168" gene 945500..945800 /gene="ybjC" /locus_tag="STM0873" /db_xref="GeneID:1252392" regulatory 945500..945505 /regulatory_class="ribosome_binding_site" /gene="ybjC" /locus_tag="STM0873" /note="putative RBS for ybjC; RegulonDB:STMS1H001169" CDS 945510..945800 /gene="ybjC" /locus_tag="STM0873" /note="similar to E. coli orf, hypothetical protein (AAC73937.1); Blastp hit to AAC73937.1 (95 aa), 59% identity in aa 1 - 95" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459850.1" /db_xref="GeneID:1252392" /translation="MRTIGVLPKSVLILEYLGMILLALALLSLNHYLTLPAPFNTPLA GVLMVFLGVVLILPAAVAMMWRIAQLLAPQLMKRPPDISSRSDREKHNESDH" misc_feature 945510..945791 /gene="ybjC" /locus_tag="STM0873" /note="Protein of unknown function (DUF1418); Region: DUF1418; pfam07214" /db_xref="CDD:369264" gene 945772..946506 /gene="mdaA" /locus_tag="STM0874" /db_xref="GeneID:1252393" regulatory 945772..945777 /regulatory_class="ribosome_binding_site" /gene="ybjC" /locus_tag="STM0873" /note="putative RBS for mdaA; RegulonDB:STMS1H001170" CDS 945784..946506 /gene="mdaA" /locus_tag="STM0874" /EC_number="1.-.-.-" /note="oxygen-insensitive NADPH nitroreductase. (SW:NFSA_SALTY)" /codon_start=1 /transl_table=11 /product="oxygen-insensitive NADPH nitroreductase" /protein_id="NP_459851.1" /db_xref="GeneID:1252393" /translation="MSPTIELLCGHRSIRHFTDEPVTDAQREAIIAAARSTSSSSFLQ CSSIIRITDRALREALVPLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLL LGVVDTAMMGQNALTAAESLGLGGVYIGGIRNNIESVTELLKLPKHVLPLFGLCLGWP ADNPDLKPRLPAELVVHENQYQPLDEKLLARYDEQLAEYYLTRGSNTRRDTWSDHIRR TLIKENRPFILEYLHKQGWATR" misc_feature 945784..946503 /gene="mdaA" /locus_tag="STM0874" /note="oxygen-insensitive NADPH nitroreductase; Region: PRK10765" /db_xref="CDD:182710" misc_feature order(945793..945798,945802..945810,945814..945816, 945868..945870,945874..945882,945886..945897, 945904..945915,945919..945942,945949..945951, 946027..946029,946084..946092,946096..946101, 946108..946113,946120..946125,946132..946134, 946144..946149,946165..946167,946180..946182, 946210..946215,946219..946221,946240..946242, 946282..946293,946297..946299,946303..946314, 946357..946359,946417..946422,946429..946431, 946441..946458) /gene="mdaA" /locus_tag="STM0874" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:380322" misc_feature order(945814..945822,945826..945828,945895..945903, 945907..945909,945982..945984,945988..945990, 946099..946104,946111..946113,946162..946176, 946282..946284,946288..946290) /gene="mdaA" /locus_tag="STM0874" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:380322" misc_feature order(945826..945828,945907..945909,946180..946185, 946276..946278,946282..946284,946378..946383, 946390..946392) /gene="mdaA" /locus_tag="STM0874" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:380322" gene 946554..947466 /gene="rimK" /locus_tag="STM0875" /db_xref="GeneID:1252394" regulatory 946554..946559 /regulatory_class="ribosome_binding_site" /gene="rimK" /locus_tag="STM0875" /note="putative RBS for rimK; RegulonDB:STMS1H001171" CDS 946564..947466 /gene="rimK" /locus_tag="STM0875" /note="ribosomal protein S6 modification protein. (SW:RIMK_SALTY)" /codon_start=1 /transl_table=11 /product="ribosomal protein S6 modification protein" /protein_id="NP_459852.1" /db_xref="GeneID:1252394" /translation="MKIAILSRDGTLYSCKRLREAAMRRGHLVEILDPLSCYMNINPA ASSIHYKGRRLPHFDAVIPRIGSAITFYGTAALRQFELLGSYPLNESVAITRARDKLR SLQLLARQGIDLPITGIAHSPDDTSDLIKMVGGAPLVVKLVEGTQGIGVVLAETRQAA ESVIDAFRGLNAHILVQEYIAEAKGCDIRCLVVGNEVVAAIERCAKAGDFRSNLHRGG VASIATITPRERDIAIKAAQTLGLDVAGVDILRAARGPLVMEVNASPGLEGIEKTTGV DIAGRMIQWIERHATPEFCLKIGG" misc_feature 946564..947463 /gene="rimK" /locus_tag="STM0875" /note="30S ribosomal protein S6--L-glutamate ligase; Region: PRK10446" /db_xref="CDD:182468" gene 947547..948039 /gene="ybjN" /locus_tag="STM0876" /db_xref="GeneID:1252395" regulatory 947547..947552 /regulatory_class="ribosome_binding_site" /gene="ybjN" /locus_tag="STM0876" /note="putative RBS for ybjN; RegulonDB:STMS1H001172" CDS 947563..948039 /gene="ybjN" /locus_tag="STM0876" /note="similar to E. coli putative sensory transduction regulator (AAC73940.1); Blastp hit to AAC73940.1 (158 aa), 84% identity in aa 1 - 158" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459853.1" /db_xref="GeneID:1252395" /translation="MISLVVPTLDTLRQWLDDLGMNFFECDTCQALHLPHMQNFDGVY DAKIDLVDNTVLFSAMAEVRPSALLPLAADLSAINASSLTVKAFLDMQDDNLPKLVVC QSLSVMQGVTYEQFEWFVRQSEEQISMVILEAGAHQLLFNAEEDAQKTSAVDHFLH" misc_feature 947584..947955 /gene="ybjN" /locus_tag="STM0876" /note="YbjN protein family is structurally similar to type III secretion system chaperones; Region: YbjN_AmyR-like; cd17511" /db_xref="CDD:409323" misc_feature order(947713..947715,947725..947727,947785..947790, 947797..947802,947806..947820,947824..947829, 947869..947874,947878..947880,947887..947895, 947905..947907,947914..947916,947926..947928) /gene="ybjN" /locus_tag="STM0876" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:409323" gene 948375..949500 /gene="potF" /locus_tag="STM0877" /db_xref="GeneID:1252396" regulatory 948375..948380 /regulatory_class="ribosome_binding_site" /gene="potF" /locus_tag="STM0877" /note="putative RBS for potF; RegulonDB:STMS1H001173" CDS 948388..949500 /gene="potF" /locus_tag="STM0877" /note="similar to E. coli periplasmic putrescine-binding protein; permease protein (AAC73941.1); Blastp hit to AAC73941.1 (370 aa), 94% identity in aa 1 - 370" /codon_start=1 /transl_table=11 /product="ABC superfamily (peri_perm), putrescine transporter" /protein_id="NP_459854.1" /db_xref="GeneID:1252396" /translation="MTALKKKWLSGLVAGALMVVSVGTLAAEQKTLHIYNWSDYIAPD TVANFEKETGINVIYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVFQPLD KSKLPGWKNLDPELLKLVAKHDPDNKYAMPYMWATTGIGYNVDKVKAVLGDDAPVNSW DLVLKPENLEKLKSCGVSFLDAPEEIFATVLNYLGKDPNSSKADDYTGPATDLLLKLR PNIRYFHSSQYINDLANGDTCVAIGWAGDVWQAANRAKEAKNGVNISFSIPKEGAMAF FDVFAMPADAKNKDEAYQFLNYLLRPDVIAHISDHVFYANANKEATALVSQQVRDNPG IYPPADVRAKLFTLKVQEPKIDRVRTRAWTKVKSGK" misc_feature 948388..949497 /gene="potF" /locus_tag="STM0877" /note="putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional; Region: PRK10682" /db_xref="CDD:182645" misc_feature order(948496..948498,949117..949119,949126..949128, 949213..949215,949219..949221,949327..949329) /gene="potF" /locus_tag="STM0877" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270377" misc_feature order(948529..948531,948538..948543,949291..949296) /gene="potF" /locus_tag="STM0877" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:270377" gene 949574..950721 /gene="potG" /locus_tag="STM0878" /db_xref="GeneID:1252397" regulatory 949574..949579 /regulatory_class="ribosome_binding_site" /gene="potG" /locus_tag="STM0878" /note="putative RBS for potG; RegulonDB:STMS1H001174" CDS 949588..950721 /gene="potG" /locus_tag="STM0878" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of putrescine transport system (AAC73942.1); Blastp hit to AAC73942.1 (404 aa), 93% identity in aa 28 - 404" /codon_start=1 /transl_table=11 /product="putrescine transporter" /protein_id="NP_459855.1" /db_xref="GeneID:1252397" /translation="MNDVPHRPQVKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYK GEIFALLGASGCGKSTLLRMLAGFEPPSSGQIMLDGVDLAHVPPYQRPINMMFQSYAL FPHMTVEQNIAFGLKQDKLPKAEITSRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVAL ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAG RIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIGSVNVFEGLLKAREEDGLVIDAPGLV HPLKVDADASVVDNVPVYVALRPEKIMLCESPPADGYNFAVGEVAHIAYLGDLSIYHV RLKSGQMISAQLQNAHRYRKGLPTWGDEVRLCWEADSCVVLTV" misc_feature 949588..950718 /gene="potG" /locus_tag="STM0878" /note="putrescine ABC transporter ATP-binding subunit PotG; Region: potG; PRK11607" /db_xref="CDD:183226" gene 950720..951684 /gene="potH" /locus_tag="STM0879" /db_xref="GeneID:1252398" regulatory 950720..950725 /regulatory_class="ribosome_binding_site" /gene="potH" /locus_tag="STM0879" /note="putative RBS for potH; RegulonDB:STMS1H001175" CDS 950731..951684 /gene="potH" /locus_tag="STM0879" /note="ABC superfamily (membrane); similar to E. coli putrescine transport protein; permease (AAC73943.1); Blastp hit to AAC73943.1 (317 aa), 92% identity in aa 1 - 317" /codon_start=1 /transl_table=11 /product="putrescine transporter" /protein_id="NP_459856.1" /db_xref="GeneID:1252398" /translation="MSTLEPPARISKPGGAALWLARMQMKHGRKLVIALPYIWLILLF LLPFLIVFKISLAEMARAIPPYTDLLEWADGQLSITLNLGNFLQLTDDPLYFEAYLQS LQIAGISTICCLLLGYPLAWAVAHSKPSTRNILLLLVILPSWTSFLIRVYAWMGILKN NGALNNVLLWLGVIDQPLTILHTNLAVYIGIVYAYLPFMVLPIYTALTRIDYSLVEAS LDLGARPLKTFFSIIVPLTKGGIIAGSMLVFIPAVGEFVIPELLGGPDSIMIGRVLWQ EFFNNRDWPVASAVAIIMLLLLIVPIMWFHKHQQKSVGEHG" misc_feature 950731..951681 /gene="potH" /locus_tag="STM0879" /note="putrescine transporter subunit: membrane component of ABC superfamily; Provisional; Region: PRK10683" /db_xref="CDD:182646" misc_feature order(951073..951078,951085..951090,951103..951105, 951133..951144,951148..951177,951184..951189, 951232..951234,951307..951312,951316..951318, 951322..951324,951331..951336,951340..951342, 951352..951357,951364..951366,951415..951417, 951457..951462,951469..951471,951490..951501, 951508..951513,951544..951549,951577..951582, 951589..951594,951598..951603,951610..951615, 951622..951627) /gene="potH" /locus_tag="STM0879" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(951151..951192,951232..951234,951490..951507) /gene="potH" /locus_tag="STM0879" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(951232..951234,951292..951294,951508..951510, 951547..951549,951577..951579) /gene="potH" /locus_tag="STM0879" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(951367..951405,951421..951426,951436..951438) /gene="potH" /locus_tag="STM0879" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 951667..952526 /gene="potI" /locus_tag="STM0880" /db_xref="GeneID:1252399" regulatory 951667..951672 /regulatory_class="ribosome_binding_site" /gene="potI" /locus_tag="STM0880" /note="putative RBS for potI; RegulonDB:STMS1H001176" CDS 951681..952526 /gene="potI" /locus_tag="STM0880" /note="ABC superfamily (membrane); similar to E. coli putrescine transport protein; permease (AAC73944.1); Blastp hit to AAC73944.1 (281 aa), 94% identity in aa 1 - 281" /codon_start=1 /transl_table=11 /product="putrescine transporter" /protein_id="NP_459857.1" /db_xref="GeneID:1252399" /translation="MNNLPVVRSPWRILILVLGFTFLYAPMLMLVIYSFNSSKLVTVW AGWSTRWYGELFRDTAMMSAVGLSLTIAACAATMAVVLGTIAAVVMVRFGRFRGANGF AFMITAPLVMPDVITGLSLLLLFVALGHAIGWPSDRGMLTIWLAHVTFCTAYVAVVIA SRLRELDRSIEEAAMDLGAAPLKVFFVITLPMIMPAVISGWLLAFTLSLDDLVIASFV SGPGATTLPMLVFSSVRMGVNPEINALATLILGVVGIVGFIAWYLMARAEKQRIRDIQ RARRG" misc_feature 951681..952523 /gene="potI" /locus_tag="STM0880" /note="putrescine transporter subunit: membrane component of ABC superfamily; Provisional; Region: PRK10592" /db_xref="CDD:182574" misc_feature order(951921..951926,951933..951938,951951..951953, 951984..951995,951999..952028,952035..952040, 952044..952046,952122..952124,952128..952130, 952134..952136,952140..952142,952149..952154, 952158..952160,952170..952175,952182..952184, 952233..952235,952275..952280,952287..952289, 952308..952319,952326..952331,952368..952373, 952401..952406,952413..952418,952422..952427, 952434..952439,952446..952448) /gene="potI" /locus_tag="STM0880" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(952002..952046,952308..952325) /gene="potI" /locus_tag="STM0880" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(952044..952046,952107..952109,952326..952328, 952362..952364,952371..952373,952401..952403) /gene="potI" /locus_tag="STM0880" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(952185..952223,952239..952244,952254..952256) /gene="potI" /locus_tag="STM0880" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 952585..953073 /gene="ybjO" /locus_tag="STM0881" /db_xref="GeneID:1252400" regulatory 952585..952590 /regulatory_class="ribosome_binding_site" /gene="ybjO" /locus_tag="STM0881" /note="putative RBS for ybjO; RegulonDB:STMS1H001177" CDS 952600..953073 /gene="ybjO" /locus_tag="STM0881" /note="similar to E. coli orf, hypothetical protein (AAC73945.1); Blastp hit to AAC73945.1 (162 aa), 80% identity in aa 6 - 162" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459858.1" /db_xref="GeneID:1252400" /translation="MGFIKQSTSSHARLNVPTLVQVAAMAIILIRGLDVLMIMNTLGI RGMGEFIHRSVQTWSLTLVFLASLVLVFVEIYCAFSLVKGRSWARWVYLATQIIVSGY LWAASLGYGYPELFSIAGESKRDILHSLVMQKLPDLLILFLLFIPAPSRRFFRLQ" misc_feature 952645..953067 /gene="ybjO" /locus_tag="STM0881" /note="Protein of unknown function (DUF2593); Region: DUF2593; pfam10767" /db_xref="CDD:431483" gene 953103..954246 /gene="ybjF" /locus_tag="STM0882" /db_xref="GeneID:1252401" regulatory 953103..953108 /regulatory_class="ribosome_binding_site" /gene="ybjF" /locus_tag="STM0882" /note="putative RBS for ybjF; RegulonDB:STMS1H001178" CDS 953116..954246 /gene="ybjF" /locus_tag="STM0882" /EC_number="2.1.1.-" /note="similar to E. coli putative enzyme (AAC73946.1); Blastp hit to AAC73946.1 (375 aa), 87% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="putative tRNA (uracil-5-)-methyltransferase" /protein_id="NP_459859.1" /db_xref="GeneID:1252401" /translation="MQCALYDAGRCRSCQWITQSVNEQLSAKTADLHRLLAGLPVEQW CAPIGGPEQHFRNKAKMVVSGSVEKPLFGMLHRDGTPVDLCGCPLYPASFDPVFSALK PFIARAGLTPYNVARKRGELKYLLLTESQFDGGMMLRFVLRSETKLTQLRAALPWLRA QLPQLRVITANIQPVHMAIMEGETEIYLTDQQALAERFNDVPLWIRPQSFFQTNPTVA SRLYATARDWVGQLPVRHMWDLFCGVGGFGLHCATPQMQLTGIEIAPEAIACAKQSAA ELGLTRLHFQALDSTQFATAQGETPDLVLVNPPRRGIGKPLCDYLAQMAPRFIIYSSC NAQTMAQDIRHLPNYRIQRVQLFDMFPHTAHYEVLALLRRSI" misc_feature 953119..954237 /gene="ybjF" /locus_tag="STM0882" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173" /db_xref="CDD:473071" misc_feature order(953833..953853,953899..953904,953977..953985, 954034..954036) /gene="ybjF" /locus_tag="STM0882" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 954525..955872 /locus_tag="STM0884" /db_xref="GeneID:1252402" regulatory 954525..954530 /regulatory_class="ribosome_binding_site" /locus_tag="STM0884" /note="putative RBS for STM0884; RegulonDB:STMS1H001179" CDS 954529..955872 /locus_tag="STM0884" /note="similar to E. coli orf, hypothetical protein (AAC77150.1); Blastp hit to AAC77150.1 (484 aa), 38% identity in aa 20 - 441" /codon_start=1 /transl_table=11 /product="putative inner membrane protein; homology to SgaT from Vibrio" /protein_id="NP_459860.1" /db_xref="GeneID:1252402" /translation="MEGVQTMFAKFIDVIQTFLTEPAILIGILVGVGYALDKKTPIKI ITGMISAMVGLMMVLFGGFQFSATFKPVAEAVSKAYGVHGYLMDSYAMKAATQIALGD NFGYVGYVFVLAFFTNLLLVLFGRYTGAKGIFLTGNTGVSHSQAVLWLIVFWLGFGWV QSIVIAGVLTGVFWAFSTTLIVKPIAKVTNNAGFTIAHNQMLGLWFFSKFAHKFGDPE KHDAENLKLPGWLAIFNHNVTAIAIVMTLFVGGFLLATGIDNVQLMAKGKPWYIYIIN LGLQFSMYMVILLQGVRMMVGEINGSFKGWQDRFIPNAIPAVDVAALLPFSPNAATLG FVFCTFGTIFSMGILLLIHSPIMVLPGFVPLFFSGGPIGVLANRMGGYRSVIICTFLL GIIQTFGTVWAIPLTGLAKEGVGWTGIFDWATLWPAICELLKFIASTFHLGPYSI" misc_feature 954529..955839 /locus_tag="STM0884" /note="PTS sugar transporter subunit IIC; Region: PRK12997" /db_xref="CDD:237262" gene 955896..956222 /locus_tag="STM0885" /db_xref="GeneID:1252403" regulatory 955896..955901 /regulatory_class="ribosome_binding_site" /locus_tag="STM0885" /note="putative RBS for STM0885; RegulonDB:STMS1H001180" CDS 955902..956222 /locus_tag="STM0885" /note="similar to E. coli orf, hypothetical protein (AAC77151.1); Blastp hit to AAC77151.1 (101 aa), 25% identity in aa 2 - 97" /codon_start=1 /transl_table=11 /product="putative inner membrane protein; homology to SgaT from Vibrio" /protein_id="NP_459861.1" /db_xref="GeneID:1252403" /translation="MKDSVNILFVCGYGVGSSVMLQTVVKKALAKYDFSFDMEHTAAG EVGGFTDWADIYAISKKLLDVVSLDPKHGQYLIPIENIMDGESIGKQIYDVVEKNFPH LLNK" misc_feature 955917..956186 /locus_tag="STM0885" /note="subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel...; Region: PTS_IIB_ascorbate; cd05563" /db_xref="CDD:99905" misc_feature order(955932..955943,955947..955955) /locus_tag="STM0885" /note="P-loop; other site" /db_xref="CDD:99905" misc_feature order(955932..955934,955938..955943,955950..955955) /locus_tag="STM0885" /note="active site" /db_xref="CDD:99905" misc_feature 955932..955934 /locus_tag="STM0885" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99905" gene 956226..957719 /locus_tag="STM0886" /db_xref="GeneID:1252404" regulatory 956226..956231 /regulatory_class="ribosome_binding_site" /locus_tag="STM0886" /note="putative RBS for STM0886; RegulonDB:STMS1H001181" CDS 956232..957719 /locus_tag="STM0886" /note="similar to E. coli putative sulfatase (AAC76701.1); Blastp hit to AAC76701.1 (497 aa), 25% identity in aa 7 - 358, 26% identity in aa 401 - 446" /codon_start=1 /transl_table=11 /product="putative sulfatase" /protein_id="NP_459862.1" /db_xref="GeneID:1252404" /translation="MKAIILLFDSLNKNYLPPYGDLLTKAPNFQRLAAHAATFDNSYV GSMPCMPARRELHTGRYNFLHREWGPLEPFDDSMPELLKKAGIYTHLISDHLHYWEDG GGNYHNRYSSWDVVRGQEGDHWKASVGEPPIPEVLRVPQKQTGGGVSGLWRHDWANRE YIQQEADFPQTKVFDAGCDFIHKNHAEDNWLLQVETFDPHEPFYTTEEYLSLYDDEWQ GPHYDWPRGKVSESEEAIAHIRCRYRALVSMCDRNLGRILDLMDEHDLWRDTMLIVGT DHGFLLGEHGWWAKNQMPYYNEVANNPLFIWDPRSAVCGARRQSLVQMIDWAPTLLDY FQQPIPADMQGQPLAKIIASDEPVREGALFGVFSGHVNVTDGRYVYMRAAQPGREHDI ANYTLMPIKMNARYDVDELGKLSLAPPFNFTKGLQVLRIPAREKYKGVNSFGHLLFDL RDDPQQQHPIHDEAIEARMINLLIRLMKENDAPAEQYRRLGLDVV" misc_feature 956232..957281 /locus_tag="STM0886" /note="uncharacterized sulfatase subfamily; Region: sulfatase_like; cd16148" /db_xref="CDD:293767" misc_feature order(956256..956261,956376..956378,956511..956513, 956517..956519,956829..956831,957060..957065) /locus_tag="STM0886" /note="putative active site [active]" /db_xref="CDD:293767" misc_feature order(956256..956261,956376..956378,956511..956513, 956517..956519,956829..956831,957063..957065) /locus_tag="STM0886" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:293767" gene complement(957938..958683) /gene="artJ" /locus_tag="STM0887" /db_xref="GeneID:1252405" CDS complement(957938..958669) /gene="artJ" /locus_tag="STM0887" /note="ABC superfamily (bind_prot); similar to E. coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); Blastp hit to AAC73947.1 (243 aa), 91% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="arginine 3rd transport system" /protein_id="NP_459863.1" /db_xref="GeneID:1252405" /translation="MKKLVLAALLASFATGSIAAEKINFGVSATYPPFESLDASNKIV GFDIDLATALCKQMQAECTFTNHAFDSLIPALKFRKYDAVISGMDITPERSKQVAFSN PYYANSALVIAKKDTYKTFTDLKGKRIGMENGTTHQKYLQDKHPEVKTVAYDSYQNAI IDLKNGRIDGVFGDTAVVNEWLKTNPQLGPATEKVTDPQYFGTGLGIAVRPDNKALLE KLNNALAAIKADGTYQKISDQWFPQ" misc_feature complement(957947..958612) /gene="artJ" /locus_tag="STM0887" /note="Substrate binding domain of arginine-specific ABC transporter; type 2 periplasmic-binding protein fold; Region: PBP2_Arg_STM4351; cd13700" /db_xref="CDD:270418" misc_feature complement(order(958148..958150,958259..958267, 958274..958276,958388..958390,958403..958408, 958412..958414,958463..958465,958577..958579, 958586..958588)) /gene="artJ" /locus_tag="STM0887" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:270418" regulatory complement(958678..958683) /regulatory_class="ribosome_binding_site" /gene="artJ" /locus_tag="STM0887" /note="putative RBS for artJ; RegulonDB:STMS1H001182" gene complement(958906..959589) /gene="artM" /locus_tag="STM0888" /db_xref="GeneID:1252406" CDS complement(958906..959574) /gene="artM" /locus_tag="STM0888" /note="ABC superfamily (membrane); similar to E. coli arginine 3rd transport system permease protein (AAC73948.1); Blastp hit to AAC73948.1 (222 aa), 94% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="arginine 3rd transport system" /protein_id="NP_459864.1" /db_xref="GeneID:1252406" /translation="MLEYLPELLKGLHTSLTLTVASIAVALVLALVFTIILTLKTPFV VWLVRGYITLFTGTPLLVQIFLIYYGPGQFPTLQEYPLLWHLLSEPWLCALIALSLNS AAYTTQLFYGAIRAIPEGQWQSCSALGMSKKDTLAILLPYAFKRALSSYSNEVVLVFK STSLAYTITLMEVMGYSQLLYGRTYDVVVFGAAGVIYLVVNGLLTLMMRLIERKALAF ERRN" misc_feature complement(958909..959574) /gene="artM" /locus_tag="STM0888" /note="arginine ABC transporter permease ArtM; Region: artM; PRK11122" /db_xref="CDD:182978" gene complement(959574..960305) /gene="artQ" /locus_tag="STM0889" /db_xref="GeneID:1252407" CDS complement(959574..960290) /gene="artQ" /locus_tag="STM0889" /note="ABC superfamily (membrane); similar to E. coli arginine 3rd transport system permease protein (AAC73949.1); Blastp hit to AAC73949.1 (238 aa), 94% identity in aa 1 - 237" /codon_start=1 /transl_table=11 /product="arginine 3rd transport system" /protein_id="NP_459865.1" /db_xref="GeneID:1252407" /translation="MNEFFPLASAAGMTVGLAVCALIIGLALAMFFAVWESVKWRPIA WIGSALVTILRGLPEILVVLFIYFGSSQLLLTLSDGFTLHLGFTQIPVQMEIENFDVS PFLCGVIALSLLYAAYASQTLRGALKAVPSGQWESGQALGLSKTAIFFRLVMPQMWRH ALPGLGNQWLVLLKDTALVSLISVNDLMLQTKSIATRTQEPFNWYIIAAAIYLVITLI SQYILKRIDLRATRFERRPD" misc_feature complement(959580..960290) /gene="artQ" /locus_tag="STM0889" /note="arginine ABC transporter permease ArtQ; Region: PRK11123" /db_xref="CDD:182979" misc_feature complement(order(959640..959645,959652..959657, 959661..959666,959673..959678,959706..959711, 959748..959753,959760..959771,959790..959792, 959799..959804,959844..959846,959895..959897, 959904..959909,959919..959921,959925..959930, 959937..959939,959943..959945,959949..959954, 960090..960092,960096..960101,960108..960137, 960141..960152,960180..960182,960195..960200, 960207..960212)) /gene="artQ" /locus_tag="STM0889" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(959754..959771,960090..960134)) /gene="artQ" /locus_tag="STM0889" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(959676..959678,959706..959708, 959715..959717,959751..959753,959967..959969, 960090..960092)) /gene="artQ" /locus_tag="STM0889" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(959823..959825,959835..959840, 959856..959894)) /gene="artQ" /locus_tag="STM0889" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(959584..959589) /regulatory_class="ribosome_binding_site" /gene="artM" /locus_tag="STM0888" /note="putative RBS for artM; RegulonDB:STMS1H001183" gene complement(960297..961028) /gene="artI" /locus_tag="STM0890" /db_xref="GeneID:1252408" CDS complement(960297..961028) /gene="artI" /locus_tag="STM0890" /note="ABC superfamily (bind_prot); similar to E. coli arginine 3rd transport system periplasmic binding protein (AAC73950.1); Blastp hit to AAC73950.1 (243 aa), 95% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="arginine transport system" /protein_id="NP_459866.1" /db_xref="GeneID:1252408" /translation="MKKVLIAALIAGFSLSATAAQTIRFATEASYPPFESMDANNKIV GFDVDLANALCKEIDASCTFTNQAFDSLIPSLKFRRFDAVMAGMDITPEREKQVLFTT PYYDNSALFVGQQGKYTSVDQLKGKKVGVQNGTTHQKFIMDKHPEITTVPYDSYQNAK LDLQNGRIDAVFGDTAVVTEWLKANPKLAPVGDKVTDKDYFGTGLGIAVRQGNTELQQ KFNTALEKVKKDGTYETIYNKWFQK" misc_feature complement(960300..961028) /gene="artI" /locus_tag="STM0890" /note="arginine ABC transporter substrate-binding protein; Region: PRK15007" /db_xref="CDD:184969" regulatory complement(960300..960305) /regulatory_class="ribosome_binding_site" /gene="artQ" /locus_tag="STM0889" /note="putative RBS for artQ; RegulonDB:STMS1H001184" gene complement(961046..961774) /gene="artP" /locus_tag="STM0891" /db_xref="GeneID:1252409" CDS complement(961046..961774) /gene="artP" /locus_tag="STM0891" /note="ABC superfamily (atp&memb); similar to E. coli ATP-binding component of 3rd arginine transport system (AAC73951.1); Blastp hit to AAC73951.1 (242 aa), 95% identity in aa 1 - 242" /codon_start=1 /transl_table=11 /product="arginine transport system" /protein_id="NP_459867.1" /db_xref="GeneID:1252409" /translation="MSIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSL LRVLNLLEMPRSGTLTIAGNHFDFTKTPSDKAIRELRQNVGMVFQQYNLWPHLTVVQN LIEAPCRVLGLTKDQALARAEKLLERLRLKPYSDRYPLHLSGGQQQRVAIARALMMEP QVLLFDEPTAALDPEITAQIVSIIHELAETNITQVIVTHEVEVARKTASRVIYMENGH IVEHGDAGCFAHPQTEAFKNYLSH" misc_feature complement(961049..961774) /gene="artP" /locus_tag="STM0891" /note="arginine transporter ATP-binding subunit; Provisional; Region: artP; PRK11124" /db_xref="CDD:182980" gene complement(962004..962531) /gene="ybjP" /locus_tag="STM0892" /db_xref="GeneID:1252410" CDS complement(962004..962519) /gene="ybjP" /locus_tag="STM0892" /note="similar to E. coli putative enzyme (AAC73952.1); Blastp hit to AAC73952.1 (171 aa), 84% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_459868.1" /db_xref="GeneID:1252410" /translation="MRYSKLSLLIPCALLLSACTTVTPAYKDNGPRIGACVEGGPDSV AQQFYDYRIQHHSNDIAALRPYLSDNLAKLLTDASRDTEHRQLMSGDLFSSRATLPDS ANVASASTIPNRDARNIPLRVALKQGDQSWQDEVLMIHEGSCWVIDDVRYLGGDVHAP AGTLRQSIENR" misc_feature complement(962007..962519) /gene="ybjP" /locus_tag="STM0892" /note="putative lipoprotein; Provisional; Region: PRK10533" /db_xref="CDD:182526" regulatory complement(962526..962531) /regulatory_class="ribosome_binding_site" /gene="ybjP" /locus_tag="STM0892" /note="putative RBS for ybjP; RegulonDB:STMS1H001185" gene complement(962615..963952) /locus_tag="STM0893" /db_xref="GeneID:1252411" CDS complement(962615..963940) /locus_tag="STM0893" /note="similar to E. coli putative transposase (AAC74651.1); Blastp hit to AAC74651.1 (398 aa), 55% identity in aa 2 - 398" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage integrase" /protein_id="NP_459869.1" /db_xref="GeneID:1252411" /translation="MTLLDAGGIMAKPAYPTGVEKHGDKLRICFHYKGRRVRENLGVP DTPKNRKVAGELRASVCFAIKVGTFDYAAQFPDSPNLKLFGIVNKEITVAELADKWLK LKEMEISKNTMLRYESIIKISVSLLGGRVLASSVTQEDLLFFRKELMTGHHITRPGRE LAPKGRSVATVNSYLGVVSGLFQFAARNGYIPQNPFNGITMLKRAKAEPDPLSREEFA RLIDACHHQQIKNLWSLAVYTGMRHGELCALAWEDIDLKAGTLIVRRNYTQAKEFTLP KTQAGTDRVIHLVQPAIDALKSQASFTKLSKQHKIEVKLREYGRTKTHSCTFVFNPQI TDRSGKSKAHYAAPSLNRIWESALRRAGLRHRKAYQSRHTYACWALAAGANPNFIASQ MGHSNAQMVYTVYGAWMADNNQSQVDILNQQLASTAPGVPQKDNMLNFI" misc_feature complement(962726..963862) /locus_tag="STM0893" /note="Integrase/recombinase, includes phage integrase [Replication, recombination and repair, Mobilome: prophages, transposons]; Region: FimB; COG0582" /db_xref="CDD:440347" regulatory complement(963947..963952) /regulatory_class="ribosome_binding_site" /locus_tag="STM0893" /note="putative RBS for STM0893; RegulonDB:STMS1H001186" gene complement(963968..964216) /locus_tag="STM0894" /db_xref="GeneID:1252412" CDS complement(963968..964210) /locus_tag="STM0894" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage excisionase" /protein_id="NP_459870.1" /db_xref="GeneID:1252412" /translation="MQTIIYQIAPNDWVTDEVLMASTGLKPGTILRARKKAWFVGREY KHMTLDGKPKANGECLYHLPTINRWIRNMPDPDVDL" misc_feature complement(963989..964198) /locus_tag="STM0894" /note="Putative excisionase (DUF1233); Region: DUF1233; pfam06806" /db_xref="CDD:399649" regulatory complement(964211..964216) /regulatory_class="ribosome_binding_site" /locus_tag="STM0894" /note="putative RBS for STM0894; RegulonDB:STMS1H001187" gene complement(964576..964890) /locus_tag="STM0895" /db_xref="GeneID:1252413" CDS complement(964576..964884) /locus_tag="STM0895" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459871.1" /db_xref="GeneID:1252413" /translation="MNVLKQQITASIAKDIAFRLGAELNDEEADIFADGYNAAMLQNC NVVTSGKPLTITLPDTSSKAFWSSTGKNETFHPETYKRQVKEAIERSCVIAGIGVEVK " regulatory complement(964885..964890) /regulatory_class="ribosome_binding_site" /locus_tag="STM0895" /note="putative RBS for STM0895; RegulonDB:STMS1H001188" gene complement(965344..965740) /locus_tag="STM0896" /db_xref="GeneID:1252414" CDS complement(965344..965736) /locus_tag="STM0896" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459872.1" /db_xref="GeneID:1252414" /translation="MGSPVGRNDEAETVLREVEMAMKTELATVAARDLQIIEYRGQRV VTTEQLAAGYGTDAENIRRNFNRNKSRFIEGKHYFQITGPELENLRVTFSPAQISNKT RITGTYSNAEFQSRVSNWLTDFFRIWSE" misc_feature complement(965428..965637) /locus_tag="STM0896" /note="ORF6N domain; Region: ORF6N; pfam10543" /db_xref="CDD:431348" regulatory complement(965735..965740) /regulatory_class="ribosome_binding_site" /locus_tag="STM0896" /note="putative RBS for STM0896; RegulonDB:STMS1H001189" gene complement(966312..966733) /locus_tag="STM0897" /db_xref="GeneID:1252415" CDS complement(966312..966728) /locus_tag="STM0897" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459873.1" /db_xref="GeneID:1252415" /translation="MPSISHQVFLSGWTKRRNAVKNNTIEIYRRRIAIAALERMKRKT GSNCVIVNMPDGDIQKIDFDEKSMLKLLMRFERQACSEYGISESTSFIRSTYMNSLDI NGHTEYLTETGKLIVDELLGEVITWAKEKYFSGGIN" regulatory complement(966728..966733) /regulatory_class="ribosome_binding_site" /locus_tag="STM0897" /note="putative RBS for STM0897; RegulonDB:STMS1H001190" gene complement(967914..968613) /locus_tag="STM0898" /db_xref="GeneID:1252416" CDS complement(967914..968609) /locus_tag="STM0898" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage transcriptional regulator" /protein_id="NP_459874.1" /db_xref="GeneID:1252416" /translation="MFVKVGQKIRELRKARKMTITQLAALTDWDVGNISRLERGMQGY SAQSIQKIAEALQVPVSELFSTETDSDTVNKYSVLSLSHQRRNDVYRVDVMDVSASAG NGNSSRDFIEVISSIEYVTEEAKTLFGHRPANQVKLINVRGDSMQGTIEPGDLIFVDI GVNYFDGDGIYVFDFSGDLYVKRLQKIKSQLLVLSDNPLYKEWQITKEEMEMLHVCGK VLLSQSQQIRRHA" misc_feature complement(968394..968597) /locus_tag="STM0898" /note="Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Region: HipB; COG1396" /db_xref="CDD:441006" misc_feature complement(967950..968336) /locus_tag="STM0898" /note="Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains [Mobilome: prophages, transposons]; Region: COG2932" /db_xref="CDD:442176" regulatory complement(968608..968613) /regulatory_class="ribosome_binding_site" /locus_tag="STM0898" /note="putative RBS for STM0898; RegulonDB:STMS1H001191" gene 968722..968976 /locus_tag="STM0898A" /db_xref="GeneID:1252417" CDS 968722..968976 /locus_tag="STM0898A" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459875.1" /db_xref="GeneID:1252417" /translation="MRMFTTPLRKARLNAKLTIQEVATQTKCDPGNLSRMERGIQRPS PELAEKLAKLFCTELTEIQILYPERFFPDGNANQNTTGNA" misc_feature 968743..968907 /locus_tag="STM0898A" /note="Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators; Region: HTH_XRE; cd00093" /db_xref="CDD:238045" misc_feature order(968746..968748,968758..968760,968833..968835) /locus_tag="STM0898A" /note="non-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:238045" misc_feature order(968755..968757,968830..968832) /locus_tag="STM0898A" /note="salt bridge [active]" /db_xref="CDD:238045" misc_feature order(968776..968781,968812..968814,968821..968823, 968833..968838) /locus_tag="STM0898A" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:238045" gene 969470..969844 /locus_tag="STM0899" /db_xref="GeneID:1252418" regulatory 969470..969475 /regulatory_class="ribosome_binding_site" /locus_tag="STM0899" /note="putative RBS for STM0899; RegulonDB:STMS1H001192" CDS 969476..969844 /locus_tag="STM0899" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459876.1" /db_xref="GeneID:1252418" /translation="MNTDLKQNLIALLEEQFIRSDDKVVFDYVMQKKIKSQGYHLQRN FSISISGGRKGFIDCLVASPDGQQCAIEVDKRTPRSRSLLKLSELPEGISGFVLLKDG KHPLRYSEGGIDVIRATKFK" gene 969994..971585 /locus_tag="STM0900" /db_xref="GeneID:1252419" regulatory 969994..969999 /regulatory_class="ribosome_binding_site" /locus_tag="STM0900" /note="putative RBS for STM0900; RegulonDB:STMS1H001193" CDS 970002..971585 /locus_tag="STM0900" /note="similar to E. coli putative ATP-dependent helicase (AAC75245.1); Blastp hit to AAC75245.1 (586 aa), 29% identity in aa 124 - 378, 25% identity in aa 20 - 158" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage DNA or RNA helicases of superfamily II" /protein_id="NP_459877.1" /db_xref="GeneID:1252419" /translation="MLRRDWKSHNTFMVYAPTGSGKTGLAAFIVDGFVSRGMRVMFCV PYQILITQTASRFIEYGLSGDEIGYVWASHPNHNPALKIQIASADTLIRREFPDNIDL LIIDEAHLRKKRILQDIERLRASGVKVIGLSGTPFSPFLGKYYDRLIKPTTIGELIQR GDLSKYEFYAPTKPDLKGVKTKSSLEYGSDYNEAQLAEIMCGSTLVGDIVQNWLENGR DLPTIAFCVNVAHANYLTIQFNLAGINAEVMTADTPVDERQTIIHRFETGATKIIVSV GVLVAGFDSDVRCIIYARPTKSEIRWLQAIGRGLRTAPGKESCLIFDHSGTVHRLGYP DSIEYDDLPGKSDGMEESARRSSQERAEKLPRECSQCHYMKPAGVYVCPKCGHKPLAG EDVDTDTGRKLKKLGKNQHRPTKAQKQAWWSQIKFYQRQRVSQGKRPVSDGWCAHTFR EKFGEWPNDLSDFPMEITPEVSNYIRHKLIRYAKGKGKAAAPAETASPIPDSDITHKV ISAKRQVENIRSMLGRRTA" misc_feature 970020..971408 /locus_tag="STM0900" /note="Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair]; Region: SSL2; COG1061" /db_xref="CDD:440681" gene 971577..972550 /locus_tag="STM0901" /db_xref="GeneID:1252420" regulatory 971577..971582 /regulatory_class="ribosome_binding_site" /locus_tag="STM0901" /note="putative RBS for STM0901; RegulonDB:STMS1H001194" CDS 971582..972550 /locus_tag="STM0901" /codon_start=1 /transl_table=11 /product="Fels-1 putative prophage DNA primase" /protein_id="NP_459878.1" /db_xref="GeneID:1252420" /translation="MKTAEAAKGRWPEILEHFDLPPITGKNHYRGECPVCGARGKFRI DDRDGAGTWICVCGSGDGMKLVTLTQGKPFNEICTEIDRLIGNDYQRVKIPVNSSATS LRKRVLSKFSKLEALRGTSGAAYLNSRGIFNLPAEAIRFNARQRHNGCVFQSLYSLAT DDKGELCYLHQTLLDGAKKADIGSSSKRLKSLQEDNYLDHARSVAIRMFPVASTLGIA EGIETALSAHQIYKVNTWATINSGFMKKFRVPAGVLHLIIFADRDENSATGLAAAYEC AHANLMAKNDLQRVSVYWPDHGDFNNMLMNGDQVRELVFHKKKVAA" misc_feature 971588..>972535 /locus_tag="STM0901" /note="Uncharacterized domain associated with phage/plasmid primase [Mobilome: prophages, transposons]; Region: COG4643" /db_xref="CDD:443681" gene 972544..973410 /locus_tag="STM0902" /db_xref="GeneID:1252421" regulatory 972544..972549 /regulatory_class="ribosome_binding_site" /locus_tag="STM0902" /note="putative RBS for STM0902; RegulonDB:STMS1H001195" CDS 972550..973410 /locus_tag="STM0902" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459879.1" /db_xref="GeneID:1252421" /translation="MRTDNNEHKALFTIPTAAHSSALVNVKPLPEQRRITGHKQTDAY LWVLEVIHLNEPAHLDAAEAALEKIKISPKEAGERYSRYLLANGCDPFQIAFGTIGMN NPANAIKSARENIKKASEVRATFGSYESAMEDVEAERVIKSSAKFIDDYDWGWTTEEL EAGHIDGGRMFEIDEQRRVMVDGYRDVLPEPHTLSDVVREFIYWDWLYQVRHTAGREL GHGYGYSEHHKSVCDRERYLEKLLATIKPLSRAEAVEVCRWFLASGKDEYMEDKGAAV ILNLVGECEE" gene 973402..974222 /locus_tag="STM0903" /db_xref="GeneID:1252422" regulatory 973402..973407 /regulatory_class="ribosome_binding_site" /locus_tag="STM0903" /note="putative RBS for STM0903; RegulonDB:STMS1H001196" CDS 973407..974222 /locus_tag="STM0903" /note="similar to E. coli orf, hypothetical protein (AAC74632.1); Blastp hit to AAC74632.1 (260 aa), 38% identity in aa 11 - 130, 37% identity in aa 152 - 259, 35% identity in aa 121 - 165, 58% identity in aa 123 - 134, 40-1073758628dentity in aa 168 - 187" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage chaparone" /protein_id="NP_459880.1" /db_xref="GeneID:1252422" /translation="MKLEASLKHFSPQGMHISDSVKETSPDRLTGTDIMVAIGTTSSR ARFGLAAFFGKAGISKTDEQLAVQALVRHAMDTAPKNVRKAAGGEFGWCMLVLAQFAF AEYSRSAATSVTCHTCKGSGRITRTQTTRKVSYPWGKAPYWASKSRAVRPSDWEKWTE VTEIVPAVCEACDGKGTISARCRCGGKGEVLDRIATKERGVPVFKTCERCSGEGYSRV SSATVHRAILKRLPDLHQSSWSRNWKPFYEMLVDVLYKGERQAASEFEKATAY" misc_feature 973479..973733 /locus_tag="STM0903" /note="Antitermination protein; Region: Antiterm; pfam03589" /db_xref="CDD:427381" misc_feature 973722..973970 /locus_tag="STM0903" /note="Zinc finger domain of DnaJ and HSP40; Region: DnaJ_zf; cl21539" /db_xref="CDD:473904" misc_feature 973938..974192 /locus_tag="STM0903" /note="Antitermination protein; Region: Antiterm; pfam03589" /db_xref="CDD:427381" gene complement(974377..974777) /locus_tag="STM0904" /db_xref="GeneID:1252423" CDS complement(974377..974769) /locus_tag="STM0904" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459881.1" /db_xref="GeneID:1252423" /translation="MPGYYKISHSWEYRRRTCQDDVLLEAVITSDTNLNTEKTLLQWL NDKNKNKGTNTVDYKDITCWYYGGVWLHYAINNNALSLYMHSSGEDAFDSLNYCAYEI AKTFYKNHSDISILWIEHPHKRNKLKET" regulatory complement(974772..974777) /regulatory_class="ribosome_binding_site" /locus_tag="STM0904" /note="putative RBS for STM0904; RegulonDB:STMS1H001197" gene 975827..976225 /locus_tag="STM0905" /db_xref="GeneID:1252424" CDS 975827..976225 /locus_tag="STM0905" /note="similar to E. coli orf, hypothetical protein (AAC74261.1); Blastp hit to AAC74261.1 (122 aa), 48% identity in aa 3 - 118" /codon_start=1 /transl_table=11 /product="Fels-1 prophage hypothetical protein" /protein_id="NP_459882.1" /db_xref="GeneID:1252424" /translation="MWMRVFVIQELNMKSVIMALFLVPGLFMASAVAKQPESAAVYSP GRGVLCDQYFCADSTGISFVLTKHYAGSVQLKKLKSMGDFDRTAFTFSNGIFCDVKER LCRQDRYFGNDGKRSGVVNQHFTKILFGSK" misc_feature 975920..976039 /locus_tag="STM0905" /note="Fels-1 Prophage Protein-like; Region: Fels1; pfam05666" /db_xref="CDD:428573" misc_feature 976061..976216 /locus_tag="STM0905" /note="Fels-1 Prophage Protein-like; Region: Fels1; pfam05666" /db_xref="CDD:428573" gene 976808..977159 /locus_tag="STM0906" /db_xref="GeneID:1252425" regulatory 976808..976813 /regulatory_class="ribosome_binding_site" /locus_tag="STM0906" /note="putative RBS for STM0906; RegulonDB:STMS1H001198" CDS 976815..977159 /locus_tag="STM0906" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459883.1" /db_xref="GeneID:1252425" /translation="MKMHFDPHSWDSWIELFQSWWRGDVPIGGVVMAIVVAFFRMVYN GSSWKETLFEGLLCGSLTLTAVSALDYFDVPKSLTIAIGGTIGFIGVKKISTIISTYF SNRFGGGNPPQV" misc_feature 976824..977129 /locus_tag="STM0906" /note="Phage holin family (Lysis protein S); Region: Phage_holin_3_1; pfam05106" /db_xref="CDD:428307" gene 977156..977776 /locus_tag="STM0907" /db_xref="GeneID:1252426" regulatory 977156..977161 /regulatory_class="ribosome_binding_site" /locus_tag="STM0907" /note="putative RBS for STM0907; RegulonDB:STMS1H001199" CDS 977162..977776 /locus_tag="STM0907" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage chitinase" /protein_id="NP_459884.1" /db_xref="GeneID:1252426" /translation="MNELQFQQAAGISAGLSARWFPHIDAAMSEFGITAPLDQAMFIA QTGHESAGFTVLRESFNYSVEALKKTFGKRLTPYQCEMLGRIDGRQVAHQPQIANLVY GGRMGNKDAGDGWKYRGRGLIQITGLENYTRCGVALKLDLVANPGQLELERHAARSAA WFFVTKGCLKYSGDLVRVTQIINGGQNGFGDRRERFEKAKSVLV" misc_feature 977162..977770 /locus_tag="STM0907" /note="Chitinase, GH19 family [Carbohydrate transport and metabolism]; Region: GH19; COG3179" /db_xref="CDD:442412" gene 977762..978258 /locus_tag="STM0908" /db_xref="GeneID:1252427" regulatory 977762..977767 /regulatory_class="ribosome_binding_site" /locus_tag="STM0908" /note="putative RBS for STM0908; RegulonDB:STMS1H001200" CDS 977773..978258 /locus_tag="STM0908" /note="bacteriophage ES18 gp15 protein (gi|1143595)" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459885.1" /db_xref="GeneID:1252427" /translation="MNLLPVLLKKYWLQLSVTLLIAALAWTTEHYRDNAIQYKSQRDT ASHRLTLANATITDMTKRQRDIAALDARYTKELADAKAENDALRDDVAAGRRRLLVNA TCPAMPTGKSTSAARVDNAARPRLADSAQRDYFTLKERVTTMQKQLEGAQDYIRTQCL K" misc_feature 977872..978252 /locus_tag="STM0908" /note="Bacteriophage Rz lysis protein; Region: Phage_lysis; pfam03245" /db_xref="CDD:427215" gene 979087..979584 /locus_tag="STM0909" /db_xref="GeneID:1252428" regulatory 979087..979092 /regulatory_class="ribosome_binding_site" /locus_tag="STM0909" /note="putative RBS for STM0909; RegulonDB:STMS1H001201" CDS 979093..979584 /locus_tag="STM0909" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459886.1" /db_xref="GeneID:1252428" /translation="MDGELKNLKCNISQLAAITGLHRQTVVSRLSGVPLAPGSNEKNK LYLLTDVIRVLMEAPVSQAAEHQDPNKMTPKERKDWFDSEKGRLWLEKEMKQVVPLPE VRQQMAAIVKAITQVLEVWPDKLERDKGWSADQLNEAQDVVDEVRILLVKAIQETADD DGE" misc_feature 979120..979560 /locus_tag="STM0909" /note="Protein of unknown function (DUF1441); Region: DUF1441; pfam07278" /db_xref="CDD:429379" gene 979563..981679 /locus_tag="STM0910" /db_xref="GeneID:1252429" regulatory 979563..979568 /regulatory_class="ribosome_binding_site" /locus_tag="STM0909" /note="putative RBS for STM0910; RegulonDB:STMS1H001202" CDS 979571..981679 /locus_tag="STM0910" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459887.1" /db_xref="GeneID:1252429" /translation="MTGNKYGSAAAVRREVAEYLRPPRRMPVAEGIKQFMFVPRGANT AVPWDDTLTPYMNEAINTLSKREYDAVIFAGPARTGKTLGLIDGWIVYGIVCDPADML VVQMTETKAREHSKTRLARTFHHSPEVRKRLSPSRNDNNVHDKMFRDGSFLKIGWPSI TVFSSSDYKRVALTDYDRFPENIDGEGDGFSLASKRTTTFMSAGMTLAESSPGREITD VKWRRSSPHEAPPTTGILSLYNRGDRRRWYWPCPHCGDWFQPAMENMVGYRDNPDLMA ASEAARIQCPHCRALIQPEQKRGLNNRGVWLKEGQFINKDGEISGEARRSRIASFWME GPAAAYQTWQQLVYKLLTAEEEYERTGSEETLKAVINTDWGLPYLPRISLDQRKAETL IARAEKLPPRRVPDGVRFLVATVDVQGGKKRRFVVQVVGYGSHGERWIVDRFNITRSL RCDESGEAMQINPGAYPEDWHLLITDVLERAWPLVGHPEQEMSVLCMGVDSGGEDGVT DNAYAFWRHCRREGLAGRVYLFKGDSTARSKIFSKSYPNNTGRSDRQARACGEVPLYL LQTNALKDRIASALDRKEPGANYVHIPDWLGDWFFEELTYEERGMDGRWAKPGKGANE ALDLLCYAHALVMIRGYERINWDNPPPWARLPESAQSSRNTSAAVDPEPVTNESENHE MTEQHNPAMPFGGVSGGGWL" misc_feature 979580..981676 /locus_tag="STM0910" /note="Phage terminase, large subunit GpA [Mobilome: prophages, transposons]; Region: gpA1; COG5525" /db_xref="CDD:444276" gene 981873..983414 /locus_tag="STM0911" /db_xref="GeneID:1252430" regulatory 981873..981878 /regulatory_class="ribosome_binding_site" /locus_tag="STM0911" /note="putative RBS for STM0911; RegulonDB:STMS1H001203" CDS 981879..983414 /locus_tag="STM0911" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459888.1" /db_xref="GeneID:1252430" /translation="MNFLDKAIGALAPGWGASRLRSRMAIRAYEAITPTRTHRVKREN RSGDQLIQLAGKSLREQARWFDNNHDLVIGALDKMEERIIGAKGIIVEPQPLTGTGTL NSVLAEKIRRCWAEWSVSPEVTGQYTRPVLERLMLRTWLRDGEVFTQVLTGKISGLSP VAGVPFWLEALEPDYIPLERTDNNSNLVQGIYFNEWRRPVKYLVCQSWPGAGAAAVAV KEVTAENMLHLRFTRRLNQARGASLLAPVIIRLMDLKEYEDSERIAARIAASLGMFIK KQDVGTDGYVAPEKRKETQIQPGMLFDGLNPGEDIGMIKSDRPNAGLESFRMGQLRAV AAGLRGSFSSIARNYDGTYSAQRQELVEAQEGYSILQDSFIAAFTRPLYRRWLAAAVA SGAIEVPAGTDMSSLFNAVYSGPVMPWIDPLKEANAWRVLIRGGAATEGDWVRARGGA PADVKRRRKAETDENRKLGLVFDTDPAHETGEQSDVKEEKKDPEKSTQGDGSRAREER KRR" misc_feature 981966..983303 /locus_tag="STM0911" /note="phage portal protein, lambda family; Region: portal_lambda; TIGR01539" /db_xref="CDD:273679" gene 983260..985452 /locus_tag="STM0912" /db_xref="GeneID:1252431" regulatory 983260..983265 /regulatory_class="ribosome_binding_site" /locus_tag="STM0911" /note="putative RBS for STM0912; RegulonDB:STMS1H001204" CDS 983266..985452 /locus_tag="STM0912" /note="similar to E. coli ATP-dependent proteolytic subunit of clpA-clpP serine protease; ClpP family members; heat shock protein F21.5 (AAC73540.1); Blastp hit to AAC73540.1 (207 aa), 29% identity in aa 73 - 203" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protease subunits of ATP-dependent proteases" /protein_id="NP_459889.3" /db_xref="GeneID:1252431" /translation="MKTVSWGWCLTPIRRMKPESNPMLKRKKRTLKSPPRAMAAARGK NESGAESWYTIRAAADNAADISIYDEIGGWGISAHWFAEELVALGSITQINLHIHSPG GSIFDGLAIYNLLKNHPARKVVYVDGVACSMASVIAMVGDPVIMPENAMMMIHRPRGI AGGESSDIRDYADLLDKMESVIIPIYAEKTGKSPDDIAALLASETWMSGAECVREGFA DKVIQPVRAMAHLHSKRLEEFEHMPQNVKNMIIAPQGNAGTLTQPEPEPQAIMTTPPV AVTTPSPQPATTAPGTDEITLRARFQEEQRQRISGIQNVFGMFGNRHGELMAQCIADV DCNVDAAKDKLLEALGRGVTPTNTLGGTQNTQNPMLSHIYAGNGNFAGDGIRASLMAR AGFESSQADNPYNAMTMRELARMSLTERGVGVSTLNPMQMVGMAFTHSTSDFGNILLD VANKAILQGWEEAPETYELWTRKGQLSDFKTAHRVGMGGFNSLRQVREGAEYKYVTTG DKQATIALATYGELFSITRQAIINDDLNMLTDVPMKLGRAAKSTIADLVYAILTSNPK MSTDNVNLFDKAKHANVLEGALMDVASLDKARQLMRTQKEGERHLNIRPAFVLVPTAL ESVTNQVIKSTSVKGADINAGIINPVKDFATVIAEPRLDDNSQSTFYLAAAKGTDTIE VAYLNGVDTPYIDQQDGFSVDGVTTKVRIDAGVAPVDHRGLVKCSA" misc_feature 983452..983928 /locus_tag="STM0912" /note="Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_1; cd07016" /db_xref="CDD:132927" misc_feature order(983461..983463,983467..983469,983500..983505, 983512..983514,983560..983562,983581..983583, 983593..983595,983602..983604,983611..983616, 983626..983628,983650..983652,983710..983712, 983716..983718,983734..983745,983764..983766, 983773..983775,983779..983781,983785..983787, 983875..983877,983881..983883) /locus_tag="STM0912" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132927" misc_feature order(983659..983661,983728..983730,983875..983877) /locus_tag="STM0912" /note="active site residues [active]" /db_xref="CDD:132927" misc_feature <985030..985251 /locus_tag="STM0912" /note="Mu-like prophage major head subunit gpT; Region: Mu-like_gpT; cl01826" /db_xref="CDD:470363" gene complement(985466..986140) /locus_tag="STM0913" /db_xref="GeneID:1252432" CDS complement(985466..986137) /locus_tag="STM0913" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459890.1" /db_xref="GeneID:1252432" /translation="MIHSSEIWYFPLTRCQRVTVKSSPRQSTACFLAGLYCGLNTIRC VPSPESAPSSAINVASAATYSAPSIRTGRPKRAAVTSSILVLRRSKGLAIEPYRHRFL PFCRRRPGHAHQRQSAGGIQLYLTVFQIHFFSRRHHIGGQFGDQENAVGDAVPGGACR NIGDSDDEHIAGLHQAATLYCSGGRNGERGARLYIILCHNDFLRSGHEWPDFRRKKSP DGPFG" gene 986129..986720 /locus_tag="STM0914" /db_xref="GeneID:1252433" regulatory 986129..986134 /regulatory_class="ribosome_binding_site" /locus_tag="STM0914" /note="putative RBS for STM0914; RegulonDB:STMS1H001206" regulatory complement(986135..986140) /regulatory_class="ribosome_binding_site" /locus_tag="STM0913" /note="putative RBS for STM0913; RegulonDB:STMS1H001205" CDS 986136..986720 /locus_tag="STM0914" /codon_start=1 /transl_table=11 /product="putative Fels-1 phage tail component" /protein_id="NP_459891.1" /db_xref="GeneID:1252433" /translation="MSLKGLENAIRNLNSLDRHMVPQASAWAVNRVAASAVSAATHRV AKEAVAGDNQKKGIPFRLVKQRVRLWKASATGKHYARIRVNRGNLPAIKLGSAQVRLS RRGGKLLRRGSVLKIGPYLFRDAFIQQLANGRWHVMRRVNGKSRYPIDVVKIPLVAPL TQAFETEKKRMLEQEMPKQLMYALKQQLRLYLTR" misc_feature 986142..986717 /locus_tag="STM0914" /note="Prophage minor tail protein Z (GPZ); Region: Minor_tail_Z; pfam06763" /db_xref="CDD:284235" gene 986712..987118 /locus_tag="STM0915" /db_xref="GeneID:1252434" regulatory 986712..986717 /regulatory_class="ribosome_binding_site" /locus_tag="STM0915" /note="putative RBS for STM0915; RegulonDB:STMS1H001207" CDS 986717..987118 /locus_tag="STM0915" /codon_start=1 /transl_table=11 /product="Fels-1 prophage protein" /protein_id="NP_459892.1" /db_xref="GeneID:1252434" /translation="MNKHTQIRHAVLAKLESLSGSSAMLHDGLPVFIEPEELPALAVW LTDAQFAGQMLDERDWEAVLHVAVFLKAQAPDAELDMWMEEKIFPALEEVRGLENLIN TMTPLGYDYQRDSEMATWGMAEITYRITYTN" misc_feature 986723..987109 /locus_tag="STM0915" /note="Phage minor tail protein U; Region: Phage_tail_U; pfam06141" /db_xref="CDD:399267" gene 987122..987872 /locus_tag="STM0916" /db_xref="GeneID:1252435" regulatory 987122..987127 /regulatory_class="ribosome_binding_site" /locus_tag="STM0916" /note="putative RBS for STM0916; RegulonDB:STMS1H001208" CDS 987129..987872 /locus_tag="STM0916" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage major tail protein" /protein_id="NP_459893.1" /db_xref="GeneID:1252435" /translation="MGVPNPLIKTKGAGTTFWLYTGRGDAFHNPLADDDWLRLAGIKD LQPGEMTADAEDDDYLDDEDADWKSTTQGQKSVGDTTATLAWKPGETGQKTLVDLFDS GEVRAFRIKYPNGTVDIFRGWLSSLGKTITAKEVMTRTVKISGVGRPFLAEEDAPSVI SVSGVTVAPLNASVAVGATTTLTFTLKPDDATDKSLRIASSDTTLATVTQKDNVATVK GVKAGSVTVVGITTDGSLVAVAPVTVTAP" misc_feature 987180..987584 /locus_tag="STM0916" /note="Lambda phage tail tube protein, TTP; Region: Phage_TTP_12; cl11463" /db_xref="CDD:472191" misc_feature 987618..987854 /locus_tag="STM0916" /note="Bacterial Ig-like domain (group 2); Region: Big_2; pfam02368" /db_xref="CDD:396788" gene 988334..988656 /locus_tag="STM0917" /db_xref="GeneID:1252436" regulatory 988334..988339 /regulatory_class="ribosome_binding_site" /locus_tag="STM0917" /note="putative RBS for STM0917; RegulonDB:STMS1H001209" CDS 988339..988656 /locus_tag="STM0917" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage minor tail protein" /protein_id="NP_459894.1" /db_xref="GeneID:1252436" /translation="MMQLAREFRRPDWRRMLSEMTASELGEWADHFVRFSFSDALLDA EFATLKALVTGLVTGEAQDADDFRLLSASESAPEKTDEELMRLGEGITGGVRYGPDSE PGH" misc_feature 988345..988644 /locus_tag="STM0917" /note="Minor tail protein T; Region: Phage_tail_T; pfam06223" /db_xref="CDD:283804" gene 988621..991789 /locus_tag="STM0918" /db_xref="GeneID:1252437" regulatory 988621..988626 /regulatory_class="ribosome_binding_site" /locus_tag="STM0917" /note="putative RBS for STM0918; RegulonDB:STMS1H001210" CDS 988628..991789 /locus_tag="STM0918" /note="lambda phage H tail component homolog (gi|2232364)" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage minor tail protein" /protein_id="NP_459895.1" /db_xref="GeneID:1252437" /translation="MDQIANLVIDLSVDAADFKNEVPRVKKLLDEVSGKTDLVTQRQK NLIETLKSQGRAYVDGSIAASDAGTRQKQAMVMAAQGYDQVAQRVDMTQRHVAALSQK MQEERAQAAAVAAAQDQASAAFYRQIDSVKSLENGLQQLQRIQTQIRQARNSGGIAQQ DYLALTSEVAAKTRTLTDAEAAATKQKVRFIQRLKEQVTSQRLSSTEILRVKAAQLGV SSAADIYIRQMENAGTVTRSLGLKSAAARREIGVLFGELARGNFGALRGSGITLANRA GWLETLMSPKGLAVGGTVTAIAAAVYGLGKAWYSGTKEGEEFNKQLILTGNYAGKTAG QLQQMARSIAGNGITQHDAAGILAQVVGSGAFGSTDLSRVANAAARLKQATGQDISET ISQFKKLKDDPVNAVVALNDSLHFLTATQYQQISAAQAVGDSQLAAALAIQAYSDAVM QRTGAVQDNLGSLEKAWNWVRNAAVGAWDAMLGVGRSPDTAMKRQDMFAQWQAAEKEY QVLSRNLKVDPDYSGSNPLQKADAERLRNARQSLALKKAAYDEADKAYAQEGLAAAME KQRTDQQAQAIRSQQEFNQLVKNGTSQAEKRAQAEQELNQLIAKNRRDAKDGVTALWT EKDISSARTGIEKRFKDPTPPKTAATRNDEASRLLLRYSQQQAQVEGQIAAAKQSSGL NTDRMTEAHKQLLALQQRISDLSGKKLTADEKSVLAHKTELVQALTLLDLKQQELQRQ SALNDLKKKAVQLESQLKLEEQSQRQRHDLDLATAGMGDVQKQRYQEQLTLRQKFAQQ QEQLERDSRQKGTYGSAEYSEAEQKLRDSLNVQLNENRRYWQQLSVEQGNWKNGATRA FQNYTADAGNAAGVAEQLFSSAFSSMGNGLATFVTTGKLSFKSFTASLLSDLAKIMAQ MAMMQAVKGVGNALGFGVTANADGGVYQSASLSRYSGSVVNTPTFFAFAKGAGVMGEA GPEAILPLKRGADGKLGVVAAGMGGMAMFAPQYHIAINNDAGNGQIGPGALKVVYDLG RKAAADFIAQQGRDGGRLSGAYS" misc_feature 989312..989902 /locus_tag="STM0918" /note="Prophage tail length tape measure protein; Region: TMP_2; pfam06791" /db_xref="CDD:429120" misc_feature <990209..>990946 /locus_tag="STM0918" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:440809" misc_feature 990701..991666 /locus_tag="STM0918" /note="phage tail tape measure protein, lambda family; Region: tape_meas_lam_C; TIGR01541" /db_xref="CDD:273681" gene 991782..992118 /locus_tag="STM0919" /db_xref="GeneID:1252438" regulatory 991782..991787 /regulatory_class="ribosome_binding_site" /locus_tag="STM0919" /note="putative RBS for STM0919; RegulonDB:STMS1H001211" CDS 991789..992118 /locus_tag="STM0919" /note="lambda phage M tail component homolog (gi|2232363)" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage minor tail protein" /protein_id="NP_459896.1" /db_xref="GeneID:1252438" /translation="METFHWKIRPDMTMEAEPQVIAVKMGDGYEQRRPAGLNSNLAKY NVTIKVRKGEHQRLDAFLSRHGAVKSFLWTPPYTWTQIRVVSRKWSVSVGAMWVTYTT TFEQVVV" misc_feature 991795..992112 /locus_tag="STM0919" /note="Phage minor tail protein; Region: Phage_min_tail; pfam05939" /db_xref="CDD:428681" gene 992238..992763 /locus_tag="STM0920" /db_xref="GeneID:1252439" regulatory 992238..992243 /regulatory_class="ribosome_binding_site" /locus_tag="STM0920" /note="putative RBS for STM0920; RegulonDB:STMS1H001212" CDS 992245..992763 /locus_tag="STM0920" /note="ail and ompX homolog (gi|2232362)" /codon_start=1 /transl_table=11 /product="Fels-1 prophage attachment and invasion protein" /protein_id="NP_459897.1" /db_xref="GeneID:1252439" /translation="MKQVLIAVLIVSVTGGLAQAAGVKNTVSLGYAYTDLGGALSGNA RGLNLKYNAEDLNSGFGGMGSFTFTTADIQSYSGGKAGDMDYSSFLVGPSYRFNEYLN AYVMAGLGHGHIDDKRDNSGKKTGFAYGAGVQINPVENIAINASYEYSRFSAYDSKVN AGTWVLGVGYSF" misc_feature 992272..992760 /locus_tag="STM0920" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" gene 992889..993590 /locus_tag="STM0921" /db_xref="GeneID:1252440" regulatory 992889..992894 /regulatory_class="ribosome_binding_site" /locus_tag="STM0921" /note="putative RBS for STM0921; RegulonDB:STMS1H001213" CDS 992895..993590 /locus_tag="STM0921" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage minor tail protein" /protein_id="NP_459898.1" /db_xref="GeneID:1252440" /translation="MRDIPQDTLSQTTKTEQSARIDLWEIDLTAIGGQRYYFSNELNE KGDPVTWQGRKYDAYPIQGTGFELSGKGTSARPTLAVSNLFGMVTGLAEDVQSLVGGT VVRRVVYARFLDAVNFTGGNPEADPEQEVVSRWVIEQLSELKKTTATFVLATPTETDG SVFPGRTMLADVCNWTYRSDECGYAGPPVADEFDKPTADPSKDACSKCRTGCELRDNL PRIGCFLSINRLS" misc_feature 992910..993587 /locus_tag="STM0921" /note="Phage tail protein [Mobilome: prophages, transposons]; Region: gp18; COG4672" /db_xref="CDD:443709" gene 993596..994336 /locus_tag="STM0922" /db_xref="GeneID:1252441" regulatory 993596..993601 /regulatory_class="ribosome_binding_site" /locus_tag="STM0922" /note="putative RBS for STM0922; RegulonDB:STMS1H001214" CDS 993602..994336 /locus_tag="STM0922" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage tail assembly protein" /protein_id="NP_459899.1" /db_xref="GeneID:1252441" /translation="MEKTILVHAAACAPAESCGYVVNTSAGERYFPCQNLSAEPTMYF RMAPEDYLRAQAAGDVVALVHSHPDGLPFLSDVDRRLQVQSGLPWWLVCHDRIYTFRC VPFLTGRVFEHGVTDCYTLFRDAYHLAGIEMPDFSRGEDWWKNGENLYLDNLEATGFY RVSGEEAQSGDILICCFGSSVANHAAIYCGNGELLHHIPDQLSKRERYTDKWQRRTHS IWRHRAWHESAFTGIYNDLAAALASV" misc_feature 993605..993916 /locus_tag="STM0922" /note="Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains; Region: MPN_NLPC_P60; cd08073" /db_xref="CDD:163704" misc_feature order(993647..993649,993794..993796,993800..993802, 993824..993826,993833..993835) /locus_tag="STM0922" /note="MPN+ (JAMM) motif [active]" /db_xref="CDD:163704" misc_feature order(993794..993796,993800..993802,993833..993835) /locus_tag="STM0922" /note="Zinc-binding site [ion binding]; other site" /db_xref="CDD:163704" misc_feature 993923..994264 /locus_tag="STM0922" /note="NlpC/P60 family; Region: NLPC_P60; cl21534" /db_xref="CDD:473902" gene 994228..994911 /locus_tag="STM0923" /db_xref="GeneID:1252442" regulatory 994228..994233 /regulatory_class="ribosome_binding_site" /locus_tag="STM0923" /note="putative RBS for STM0923; RegulonDB:STMS1H001215" CDS 994234..994911 /locus_tag="STM0923" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage tail assembly protein" /protein_id="NP_459900.1" /db_xref="GeneID:1252442" /translation="MATPHTLDMATPGMARVCLHGDLQRFGRRFSFSIKTGAEAIYAL AVQIPGFRQKMNEGWYQIRIAGQDVDETSVSARLHEPLPDGAIIHIVPRIAGAGKGGL FQVVLGAVAIGASFFTAGASMAAWGAALSAGAISASSVLFSMGAAMMLGGVAQMLTPQ AKIPSSRQTDNGKQNTWFSSLDNMVAQGNALPVLYGEMLVGSRTISQEISTRDEGGGG QVVIIGR" misc_feature 994270..994875 /locus_tag="STM0923" /note="Phage-related protein, tail assembly protein I [Mobilome: prophages, transposons]; Region: COG4723" /db_xref="CDD:443758" gene complement(994965..995495) /locus_tag="STM0924" /db_xref="GeneID:1252443" CDS complement(994965..995489) /locus_tag="STM0924" /EC_number="1.15.1.1" /note="similar to E. coli superoxide dismutase precursor (Cu-Zn) (AAC74718.1); Blastp hit to AAC74718.1 (173 aa), 55% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage Cu/Zn superoxide dismutase" /protein_id="NP_459901.1" /db_xref="GeneID:1252443" /translation="MNKKLMTLAVFLFSSAASAASTDATVNLVNANGTGQKIGNITIT ETEYGLLFTPHLSSLPAGIHGFHIHENGSCDAGMKDGKPVAALAAGGHLDPQHTNKHL GPYNPEGHLGDLPALYVNQAGNADYPVLAPRLKSISQVKGHAIMIHTGGDNHEDHPNP LGGGGARIACGVIK" misc_feature complement(994968..995423) /locus_tag="STM0924" /note="Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the...; Region: Cu-Zn_Superoxide_Dismutase; cl00891" /db_xref="CDD:469976" misc_feature complement(order(995064..995069,995271..995279, 995364..995366,995370..995372,995409..995411, 995415..995417)) /locus_tag="STM0924" /note="E-class dimer interface [polypeptide binding]; other site" /db_xref="CDD:238186" misc_feature complement(order(995136..995138,995337..995339)) /locus_tag="STM0924" /note="P-class dimer interface [polypeptide binding]; other site" /db_xref="CDD:238186" misc_feature complement(order(995046..995048,995151..995153, 995160..995162,995214..995216,995283..995285, 995289..995291)) /locus_tag="STM0924" /note="active site" /db_xref="CDD:238186" misc_feature complement(order(995046..995048,995214..995216, 995283..995285,995289..995291)) /locus_tag="STM0924" /note="Cu2+ binding site [ion binding]; other site" /db_xref="CDD:238186" misc_feature complement(order(995151..995153,995160..995162, 995187..995189,995214..995216)) /locus_tag="STM0924" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238186" regulatory complement(995490..995495) /regulatory_class="ribosome_binding_site" /locus_tag="STM0924" /note="putative RBS for STM0924; RegulonDB:STMS1H001216" gene 995583..999029 /locus_tag="STM0925" /db_xref="GeneID:1252444" CDS 995583..999029 /locus_tag="STM0925" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage host specificity protein" /protein_id="NP_459902.3" /db_xref="GeneID:1252444" /translation="MMTNRLWAVLSFQREQIMGKGGGSSKTPHEAPDDLKSSQMLTVV DAICEGPIEGPVDGLKSVRINKTPVLDSDGNAMVHGVTVVYRVGEDEQSAMEGFEDSG AETLLGVEVKKSEPVTRTITTKTVDRLRFTFGVQSLVSTSTKGDRNPTSVQMLIQFRR DGQWQVERDITITGKTTTQFLASVVIDDLPPRPFEVRMMRITDDSTSDLLQNKTVWSG YTEIIDVKQCYPNTAVIGVKVDAEQFGSQQVTRNYLLRGRIVPVPSNYDPVKRTYTGI WDGTFKPAWTDNPAWCVLDMLTHPRYGMGNRIGVADVDKWALYAIAQYCDQPVPDGFG GTEPRITCNAYLTDQRKAWDVLGDFCSLMRCMPVWNGSTLTFVQDRPSDKVWTYTQSN VVMPADGAPFVYSFSALKERHNAAEVRYTDPNNGWETSTELVENDAAIRRYGRNVLKM DAFACTSRGQAHRAGLWAITTELLETQTVDFSVGAEGLRHVPGDIIEVCDSDYAGVTV GGRVLSVDSLSRTLTLDREVDIPAGGNVVLNLVGSNGQPVTVAVTAHPAPDRVTVSQL PDGVAAYSVWGLKLPDLRQRLFRCVAIRENDDGTYAITAVQHVPEKESIVDNGAKFDP LPGTSITNTPPAVQHLTTEILAEEGQYQARARWDTPRVVKGVNFSLRLTVKAEDDSDR LASSLTLTETEHTFRNLTPGRYTLSVRAVNSQGQQGDPASTQFSISAPAAPSFIELTP GYFQITATPRQAVYDPTVQYEFWFSDAQITDIHQVENAARYLGTALYWIAASVNIRPG RDYYFYIRAVNRVGKSAFVEATGQASNDAAGYLDFFKGQITESHLGKELLEKVDLTED NASKLQQFSKEWQDANGKWNAMWGVKIEQTEDGRHYVAGLGLSMEDTPDGKISQFLVA ADRIAFINPQNGNQTPGFVMQGDQIFMNEAFLKYLSAPTITSGGNPPAFSLTPDGRLT AKNADISGHINAISGALNNVVIAEDCTIQGTLRAERILGDIVKAVGKEFPYFREPATG AKRYASGTLTVQIDDDQSFDRQIIIPPINFQGSYYGRNDTWDTCTLEVRRNGALIYSG TSSSVPESYGATLDMPAGGGIVTLTFSVSTRGNSTGWPNSRISDLILMVVKKSTAGIR IS" misc_feature 996279..998363 /locus_tag="STM0925" /note="Phage-related protein, tail protein J [Mobilome: prophages, transposons]; Region: COG4733" /db_xref="CDD:443767" misc_feature 998475..998900 /locus_tag="STM0925" /note="Fibronectin type III protein; Region: DUF3672; pfam12421" /db_xref="CDD:289206" gene 999067..1001445 /locus_tag="STM0926" /db_xref="GeneID:1252445" regulatory 999067..999072 /regulatory_class="ribosome_binding_site" /locus_tag="STM0926" /note="putative RBS for STM0926; RegulonDB:STMS1H001217" CDS 999073..1001445 /locus_tag="STM0926" /note="similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 50% identity in aa 3 - 515, 57% identity in aa 878 - 1084, 43% identity in aa 1008 - 1122, 34% identity in aa 354 - 568, 29-1073758628dentity in aa 116 - 346, 24% identity in aa 962 - 1111, 26-1073758654dentity in aa 940 - 1106, 27% identity in aa 420 - 581, 23% identity in aa 959 - 1113, 23% identity in aa 961 - 1079, 30% identity in aa 778 - 829, 22% identity in aa 778 - 850" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage minor tail protein" /protein_id="NP_459903.1" /db_xref="GeneID:1252445" /translation="MPVLISGVLKDGTGMPVQNCTIQLKACRTSTAVVVNTVASENPD EAGRYSMDVEQGQYTVTLLVEGYPPSPAGVITVYVDSKPGTLNDFLGAMTEDDVRPEA LRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQAAESATAAASAAGAADASAT QAASSAASAESSAGTATTKAGEASASAASADTARTAAAASEAAAKTSEANADASRTAA GDSAAAAAASATAAQTSAERAGASETAAKTSETQAASSAGDAGASATAAAASEKAAAA SAAEAKTSETNAATSASTAAASATAASSSASEASTHAAASDTSASLAAQSRAAAGESA TRAEEAAKRAEDIADVISLEDASLTKKGIVQLSSATDSDSEALASTPKAVKTVMGEVQ TKAPLDSPALTGTPTAPTPETTAAGIEIATAAFVAAKVAQLVGSAPEALDTLKELADA LGNDPNFATTVLNKLAGKQPLDDTLTALSGKSVDGLIEYIGLRNTIDKAAGALPAGGT AVAANRLVSRGALPALTGTTRGSDSGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIG WSGANGAPAPAYIRSHRDTADAEWSEWAMLYTTLNPPPDSHPVGAAIAWPSDATPAGY ALMQGQSFDKSAYPLLAIAYPSGVIPDMRGWTIKGKPASGRAVLSQEMDGNKSHSHTA RAQDTDLGTKTTSSFDYGTKSTNTTGGHTHEFGGYINSYWGDSNHTSFQPGGGAWTQA AGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA" misc_feature 999073..999474 /locus_tag="STM0926" /note="Prophage tail fibre N-terminal; Region: phage_tail_N; pfam08400" /db_xref="CDD:285585" misc_feature 1000141..1000254 /locus_tag="STM0926" /note="Phage tail fibre repeat; Region: Phage_fiber_2; pfam03406" /db_xref="CDD:427282" misc_feature 1000900..1001043 /locus_tag="STM0926" /note="Phage Tail Collar Domain; Region: Collar; pfam07484" /db_xref="CDD:429485" gene 1001440..1002020 /locus_tag="STM0927" /db_xref="GeneID:1252446" regulatory 1001440..1001445 /regulatory_class="ribosome_binding_site" /locus_tag="STM0927" /note="putative RBS for STM0927; RegulonDB:STMS1H001218" CDS 1001445..1002020 /locus_tag="STM0927" /note="hypothetical protein in nanH 3'region. (SW:YCDD_SALTY)" /codon_start=1 /transl_table=11 /product="putative Fels-1 prophage tail assembly protein" /protein_id="NP_459904.1" /db_xref="GeneID:1252446" /translation="MPFKMSSKAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTD IAPPDIPSSHIAVFDAETQTWNLKEDHRGETVYDTTTGNQMYISEPGPLPENVTSVSP GGGYKKWDSKAKAWVNDEGAEVAARLREAEGTKSRLLQMASGKIAPLQDAVDLGIATD DEKAQLDEWKKYRVLVNRVDTSNPDWPEQPV" misc_feature 1001658..1002017 /locus_tag="STM0927" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; pfam02413" /db_xref="CDD:426761" gene complement(1002091..1003333) /gene="nanH" /locus_tag="STM0928" /db_xref="GeneID:1252447" CDS complement(1002091..1003329) /gene="nanH" /locus_tag="STM0928" /note="neuraminidase; sialidase (SW:NANH_SALTY)" /codon_start=1 /transl_table=11 /product="sialidase" /protein_id="NP_459905.1" /db_xref="GeneID:1252447" /translation="MTRHLLNCRILYMHPPLDMHTHPFIKEGKSMTVEKSVVFKAEGE HFTDQKGNTIVGSGSGGTTKYFRIPAMCTTSKGTIVVFADARHNTASDQSFIDTAAAR STDGGKTWNKKIAIYNDRVNSKLSRVMDPTCIVANIQGRETILVMVGKWNNNDKTWGA YRDKAPDTDWDLVLYKSTDDGVTFSKVETNIHDIVTKNGTISAMLGGVGSGLQLNDGK LVFPVQMVRTKNITTVLNTSFIYSTDGITWSLPSGYCEGFGSENNIIEFNASLVNNIR NSGLRRSFETKDFGKTWTEFPPMDKKVDNRNHGVQGSTITIPSGNKLVAAHSSAQNKN NDYTRSDISLYAHNLYSGEVKLIDDFYPKVGNASGAGYSCLSYRKNVDKETLYVVYEA NGSIEFQDLSRHLPVIKSYN" misc_feature complement(1002124..1003173) /gene="nanH" /locus_tag="STM0928" /note="Non-viral sialidases; Region: Sialidase_non-viral; cd15482" /db_xref="CDD:271234" misc_feature complement(1002979..1003134) /gene="nanH" /locus_tag="STM0928" /note="Sialidase propeller 1 [structural motif]; Region: Sialidase propeller 1" /db_xref="CDD:271234" misc_feature complement(order(1002157..1002159,1002214..1002216, 1002313..1002315,1002502..1002504,1002547..1002549, 1003054..1003056,1003129..1003131)) /gene="nanH" /locus_tag="STM0928" /note="catalytic site [active]" /db_xref="CDD:271234" misc_feature complement(1002757..1002948) /gene="nanH" /locus_tag="STM0928" /note="Sialidase propeller 2 [structural motif]; Region: Sialidase propeller 2" /db_xref="CDD:271234" misc_feature complement(1002571..1002723) /gene="nanH" /locus_tag="STM0928" /note="Sialidase propeller 3 [structural motif]; Region: Sialidase propeller 3" /db_xref="CDD:271234" misc_feature complement(1002442..1002552) /gene="nanH" /locus_tag="STM0928" /note="Sialidase propeller 4 [structural motif]; Region: Sialidase propeller 4" /db_xref="CDD:271234" misc_feature complement(1002250..1002405) /gene="nanH" /locus_tag="STM0928" /note="Sialidase propeller 5 [structural motif]; Region: Sialidase propeller 5" /db_xref="CDD:271234" regulatory complement(1003328..1003333) /regulatory_class="ribosome_binding_site" /gene="nanH" /locus_tag="STM0928" /note="putative RBS for nanH; RegulonDB:STMS1H001219" gene complement(1003903..1004278) /locus_tag="STM0929" /db_xref="GeneID:1252448" CDS complement(1003903..1004274) /locus_tag="STM0929" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_447365.1" /db_xref="GeneID:1252448" /translation="MGIQTSKFMPEKSKAKTKKIVVSTQSVLFKKNKHIPVIYYTATI QRRETYLPQYHLIATISFQSLNYCGFNFTPHPGNCGWDFLTIQVDLMMTQADWIILIS TVVIIIFGIILYTVICHIFKR" regulatory complement(1004273..1004278) /regulatory_class="ribosome_binding_site" /locus_tag="STM0929" /note="putative RBS for STM0929; RegulonDB:STMS1H001220" gene 1005356..1005693 /locus_tag="STM0930" /db_xref="GeneID:1252449" regulatory 1005356..1005361 /regulatory_class="ribosome_binding_site" /locus_tag="STM0930" /note="putative RBS for orf; RegulonDB:STMS1H001221" CDS 1005370..1005693 /locus_tag="STM0930" /note="similar to E. coli orf, hypothetical protein (AAC73953.1); Blastp hit to AAC73953.1 (107 aa), 94% identity in aa 1 - 107" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459907.1" /db_xref="GeneID:1252449" /translation="MQFSTTPTLEGQSIVEYCGVVTGEAILGANIFRDFFAGIRDIVG GRSGAYEKELRKAREIAFQELGEQAKALGADAVVGIDIDYETVGKDGSMLMVSVSGTA VKTRR" misc_feature 1005370..1005687 /locus_tag="STM0930" /note="hypothetical protein; Provisional; Region: PRK02877" /db_xref="CDD:179490" gene 1005673..1006520 /gene="ybjR" /locus_tag="STM0931" /db_xref="GeneID:1252450" regulatory 1005673..1005678 /regulatory_class="ribosome_binding_site" /locus_tag="STM0930" /note="putative RBS for ybjR; RegulonDB:STMS1H001222" CDS 1005690..1006520 /gene="ybjR" /locus_tag="STM0931" /note="similar to E. coli putative regulator (AAC73954.1); Blastp hit to AAC73954.1 (276 aa), 81% identity in aa 1 - 276" /codon_start=1 /transl_table=11 /product="putative aminidase" /protein_id="NP_459908.1" /db_xref="GeneID:1252450" /translation="MKALLWLVGLALLLTGCASEKGIIDKEGYQLDTRHRAQAAYPRI KVLVIHYTAENFDVSLATLTGRNVSSHYLIPATPPLYGGKPRIWQLVPEQDQAWHAGV SFWRGATRLNDTSIGIELENRGWRMSGGVKSFAPFESAQIQALIPLAKDIIARYNIKP QNVVAHADIAPQRKDDPGPRFPWRELAAQGISAWPDAQRVAFYLAGRAPYTPVDTATV LALLSRYGYEVKADMTAREQQRVIMAFQMHFRPAQWNGIADAETQAIAEALLEKYGQD " misc_feature 1005816..1006256 /gene="ybjR" /locus_tag="STM0931" /note="N-acetyl-anhydromuramyl-L-alanine amidase AmpD [Cell wall/membrane/envelope biogenesis]; Region: AmpD; COG3023" /db_xref="CDD:442259" gene complement(1006517..1007540) /locus_tag="STM0932" /db_xref="GeneID:1252451" CDS complement(1006517..1007530) /locus_tag="STM0932" /note="similar to E. coli putative nucleotide di-P-sugar epimerase or dehydratase (AAC73955.1); Blastp hit to AAC73955.1 (349 aa), 93% identity in aa 13 - 349" /codon_start=1 /transl_table=11 /product="putative nucleoside-diphosphate-sugar epimerase" /protein_id="NP_459909.1" /db_xref="GeneID:1252451" /translation="MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLEKMG AEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQQAFDLANVRATRRLGEWAV AWGVRNFIHISSPSLYFDYHHHRDIKEDFRPHRFANEFARSKAAGEEVINLLAQANPQ TRFTVLRPQSLFGPHDKVFIPRLAHMMHHYGSVLLPHGGSALVDMTYYENAIHAMWLA SQPGCDHLPSGRAYNITNGENRTLRSIVQKLIDELTIDCRIRSVPYPMLDMIARSMER FGKKSAKEPPLTHYGVSKLNFDFTLDTTRAQDELGYQPIVTLDEGIERTAAWLRDHGN LPR" misc_feature complement(1006538..1007527) /locus_tag="STM0932" /note="Nucleoside-diphosphate-sugar epimerase [Cell wall/membrane/envelope biogenesis]; Region: WcaG; COG0451" /db_xref="CDD:440220" regulatory complement(1007535..1007540) /regulatory_class="ribosome_binding_site" /locus_tag="STM0932" /note="putative RBS for STM0932; RegulonDB:STMS1H001223" gene complement(1007626..1009071) /gene="ybjT" /locus_tag="STM0933" /db_xref="GeneID:1252452" CDS complement(1007626..1009059) /gene="ybjT" /locus_tag="STM0933" /note="similar to E. coli putative dTDP-glucose enzyme (AAC73956.1); Blastp hit to AAC73956.1 (486 aa), 84% identity in aa 11 - 486" /codon_start=1 /transl_table=11 /product="putative nucleoside-diphosphate-sugar epimerase" /protein_id="NP_459910.1" /db_xref="GeneID:1252452" /translation="MAQRILVLGASGYIGQHLVFALSQQGHQVRAAARRIERLEKQRL ANVSCHKVDLHWPENLPALLRDIDTVYYLVHGMGEGGDFIAHERQAALNVRDALRQTP VKQLIFLSSLQAPAHEQSDHLRARQLTADTLRDAGVPVTELRAGIIVGAGSAAFEVMR DMVYNLPILTPPRWVRSRTTPIALENLLYYLVGLLDHPAREHRILEAAGPQVLSYQQQ FERFMAVSGKRRPLIPVPFPTRWISVWFLNVITSVPPTTAKALIQGLRHDLLADDAAL KKLIPQTLITFDDAVRRTLKEEEKLVNSSDWGYDALAFARWRPEYGYFPKQAGFTAQT PASLSALWQVVNRLGGKEGYFFGNILWQTRAAMDRLVGHKLAKGRPSHTLLKPGDTVD SWKVIIVEPEKQLTLLFGMKAPGLGRLSFTLHDKGRYREIDVRAWWHPHGMPGLIYWL LMIPAHLFIFRGMARRIARLAEQITEK" misc_feature complement(1008172..1009047) /gene="ybjT" /locus_tag="STM0933" /note="atypical (a) SDRs, subgroup 2; Region: SDR_a2; cd05245" /db_xref="CDD:187556" misc_feature complement(order(1008616..1008627,1008682..1008684, 1008694..1008696,1008727..1008735,1008835..1008843, 1008955..1008963,1009018..1009020,1009024..1009029, 1009033..1009035)) /gene="ybjT" /locus_tag="STM0933" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187556" misc_feature complement(order(1008682..1008684,1008694..1008696)) /gene="ybjT" /locus_tag="STM0933" /note="putative active site [active]" /db_xref="CDD:187556" misc_feature complement(1007671..1008072) /gene="ybjT" /locus_tag="STM0933" /note="Protein of unknown function (DUF2867); Region: DUF2867; pfam11066" /db_xref="CDD:431633" regulatory complement(1009066..1009071) /regulatory_class="ribosome_binding_site" /gene="ybjT" /locus_tag="STM0933" /note="putative RBS for ybjT; RegulonDB:STMS1H001224" gene complement(1009070..1010083) /gene="ltaA" /locus_tag="STM0934" /db_xref="GeneID:1252453" CDS complement(1009070..1010071) /gene="ltaA" /locus_tag="STM0934" /EC_number="4.1.2.-" /note="similar to E. coli putative arylsulfatase (AAC73957.1); Blastp hit to AAC73957.1 (333 aa), 88% identity in aa 1 - 333" /codon_start=1 /transl_table=11 /product="L-allo-threonine aldolase" /protein_id="NP_459911.1" /db_xref="GeneID:1252453" /translation="MIDLRSDTVTRPGRAMLEAMMTAPVGDDVYGDDPTVNALQRYAA DLSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQP IDAAADGTLPLENVAAKIKADDIHFARTRLLSLENTHNGKVLPRAYLKDAWTFTRERG LALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRAT RWRKMVGGGMRQAGILAAAGLYALKHNVARLQEDHDNAAWLAQQLREAGAEVIRHETN MLFVRVGEAQAAALGDYLRERNILINAAPIVRLVTHLDVSREQLTDVVAHWRAFLAR" misc_feature complement(1009073..1010071) /gene="ltaA" /locus_tag="STM0934" /note="L-threonine aldolase; Provisional; Region: PRK10534" /db_xref="CDD:236710" misc_feature complement(order(1009166..1009168,1009370..1009375, 1009403..1009408,1009415..1009420,1009463..1009465, 1009481..1009486,1009769..1009777,1009796..1009819, 1009871..1009873,1009892..1009897,1009904..1009906, 1010006..1010014,1010021..1010023,1010039..1010050, 1010057..1010059)) /gene="ltaA" /locus_tag="STM0934" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:99748" misc_feature complement(order(1009481..1009483,1009490..1009492, 1009565..1009567,1009574..1009576,1009664..1009666, 1009886..1009888,1009895..1009900)) /gene="ltaA" /locus_tag="STM0934" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99748" misc_feature complement(1009481..1009483) /gene="ltaA" /locus_tag="STM0934" /note="catalytic residue [active]" /db_xref="CDD:99748" regulatory complement(1010078..1010083) /regulatory_class="ribosome_binding_site" /gene="ltaA" /locus_tag="STM0934" /note="putative RBS for ltaA; RegulonDB:STMS1H001225" gene complement(1010110..1011844) /gene="poxB" /locus_tag="STM0935" /db_xref="GeneID:1252454" CDS complement(1010110..1011828) /gene="poxB" /locus_tag="STM0935" /note="similar to E. coli pyruvate oxidase (AAC73958.1); Blastp hit to AAC73958.1 (572 aa), 94% identity in aa 1 - 572" /codon_start=1 /transl_table=11 /product="pyruvate dehydrogenase/oxidase FAD and thiamine PPi cofactors, cytoplasmic in absence of cofactors" /protein_id="NP_459912.1" /db_xref="GeneID:1252454" /translation="MKQTVAAFIAKTLEQAGVKQIWGVTGDSLNGLSDSLNRMGTIEW MPTRHEEVAAFAAGAQAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHI PSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAVLNRGVSVVVLP GDVALKPAPENAVTHWYHAPLPVVTPAEEELKKLAQLLRYSSNIALMCGSGCAGAHEE LVALAAKLKAPIVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQF PYRAFYPSDAKIIQIDINPGSIGAHSKVDMALVGDIKATLRALLPLVEEKSNRKFLDK ALEHYRDARKGLDDLAKLSDKAIHPQYLAQQISHFAADDAIFTCDVGTPTVWAARYLK MNGKRRLLGSFNHGSMANAMPQALGAQATAPGRQVIAMCGDGGFSMLMGDFLSVVQMK LPIKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKAADVD GALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELA KTNWLR" misc_feature complement(1010113..1011828) /gene="poxB" /locus_tag="STM0935" /note="ubiquinone-dependent pyruvate dehydrogenase; Region: PRK09124" /db_xref="CDD:181661" regulatory complement(1011839..1011844) /regulatory_class="ribosome_binding_site" /gene="poxB" /locus_tag="STM0935" /note="putative RBS for poxB; RegulonDB:STMS1H001226" gene complement(1011986..1012967) /gene="hcr" /locus_tag="STM0936" /db_xref="GeneID:1252455" CDS complement(1011986..1012957) /gene="hcr" /locus_tag="STM0936" /note="similar to E. coli putative enzyme (AAC73959.1); Blastp hit to AAC73959.1 (322 aa), 90% identity in aa 1 - 322" /codon_start=1 /transl_table=11 /product="NADH oxidoreductase for hcp gene product" /protein_id="NP_459913.1" /db_xref="GeneID:1252455" /translation="MMTMPTSQCPWRMQVHHIRQETPDVWTIALLCHDYYPYRAGQYA LVSVRNSAETLRAYTLSSTPGVSEYITLTVRRIDDGTGSQWLTHDIKRGDYIWLSDAM GDFTCDDKTEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFNVRSPDDVIFADE WRQYPVTLVAENHATEGFIAGRLTTELLQSVPDLASRTVMTCGPAPYMDFVEQGVKAL GVTRFFKEKFFTPVAETATSGLKFTKLQPAQEFYAPIGTTLLEALESNKVPVAAACRA GVCGCCKTKVVSGDYTVSSTMTLSEAEIAEGYVLACSCHPQGDLVLA" misc_feature complement(1011989..1012954) /gene="hcr" /locus_tag="STM0936" /note="HCP oxidoreductase, NADH-dependent; Provisional; Region: PRK10684" /db_xref="CDD:236735" regulatory complement(1012962..1012967) /regulatory_class="ribosome_binding_site" /gene="hcr" /locus_tag="STM0936" /note="putative RBS for hcr; RegulonDB:STMS1H001227" gene complement(1012966..1014629) /gene="hcp" /locus_tag="STM0937" /db_xref="GeneID:1252456" CDS complement(1012966..1014618) /gene="hcp" /locus_tag="STM0937" /note="similar to prismane-protein homolog; similar to E. coli putative prismane (AAC73960.1); Blastp hit to AAC73960.1 (552 aa), 96% identity in aa 3 - 552" /codon_start=1 /transl_table=11 /product="hybrid cluster protein" /protein_id="NP_459914.1" /db_xref="GeneID:1252456" /translation="MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQG LSAWAVKAREYGIINHDVDNFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQC LSVDANAHCDNPMADLQLVSDDLGDLQRQAAEFTPNKDKAAIGENILGLRLLCLYGLK GAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECAMEIGQMNFKVMSIL DAGETTKYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLP AHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGSYDDRIWTRS IVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHIITVGFGRQTLLGAADTLIDLVS REKLRHIFLVGGCDGARGERNYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLP RLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVK NIVTGPTAPGFFTPDLLAILNEKFGLRSVTTVEEDMKQLLSA" misc_feature complement(1012969..1014618) /gene="hcp" /locus_tag="STM0937" /note="hybrid cluster protein; Provisional; Region: PRK05290" /db_xref="CDD:235391" misc_feature complement(order(1014544..1014546,1014565..1014567, 1014601..1014603,1014610..1014612)) /gene="hcp" /locus_tag="STM0937" /note="cubane metal cluster [ion binding]; other site" /db_xref="CDD:238895" misc_feature complement(order(1013143..1013145,1013245..1013247, 1013320..1013322,1013404..1013406,1013668..1013670, 1013800..1013802,1013872..1013874)) /gene="hcp" /locus_tag="STM0937" /note="hybrid metal cluster [active]" /db_xref="CDD:238895" regulatory complement(1014624..1014629) /regulatory_class="ribosome_binding_site" /gene="hcp" /locus_tag="STM0937" /note="putative RBS for hcp; RegulonDB:STMS1H001228" gene complement(1014762..1015677) /gene="ybjE" /locus_tag="STM0938" /db_xref="GeneID:1252457" CDS complement(1014762..1015661) /gene="ybjE" /locus_tag="STM0938" /note="similar to E. coli putative surface protein (AAC73961.1); Blastp hit to AAC73961.1 (315 aa), 88% identity in aa 17 - 315" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459915.1" /db_xref="GeneID:1252457" /translation="MFSGLLIILVPLIVGYLIPLRHKAALQLINRLLSWIVYLILFFM GISLAFLDNLASNLVAIFHYSAVSITIILLCNIAALLWLERILPWRHHHQQEKLPSRI AMALESLQLCGVVVLGFVIGLSGLSVLQHATEASEYTLIFLLFLVGIQLRNSGMTLKQ IVLNRRGMMVAVVVVASSLLGGVINAFILDLPLKTALAMASGFGWYSLSGILLTESFG PVIGSAAFFNDLARELLAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGVEIV PAAIVHGFILSLLVPLLMAFFSA" misc_feature complement(1014765..1015346) /gene="ybjE" /locus_tag="STM0938" /note="Lysine export protein LysO/YbjE, DUF340 family [Amino acid transport and metabolism]; Region: LysO; COG2431" /db_xref="CDD:441979" regulatory complement(1015672..1015677) /regulatory_class="ribosome_binding_site" /gene="ybjE" /locus_tag="STM0938" /note="putative RBS for ybjE; RegulonDB:STMS1H001229" gene 1015855..1017521 /gene="ybjD" /locus_tag="STM0939" /db_xref="GeneID:1252458" regulatory 1015855..1015860 /regulatory_class="ribosome_binding_site" /gene="ybjD" /locus_tag="STM0939" /note="putative RBS for ybjD; RegulonDB:STMS1H001230" CDS 1015863..1017521 /gene="ybjD" /locus_tag="STM0939" /note="similar to E. coli orf, hypothetical protein (AAC73963.1); Blastp hit to AAC73963.1 (552 aa), 89% identity in aa 1 - 552" /codon_start=1 /transl_table=11 /product="homology with RecF protein" /protein_id="NP_459916.2" /db_xref="GeneID:1252458" /translation="MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTL LLSPELDLYHFVREDFWFPPGDIKGREHHLHIILTFRETQPGRHRVRRYRALEACWSL CEDDFHRIFYRLEGECGADGSVMTLRSFLNSDGQPLLVENINDQVRHLVRLMPVLRLR DARFMRRIRNGTVPNVPDVEVTARQLDFLARELATRPQNLTDGQIRQGLSAMVQLLEH YFSEQGAGQARHRLMRRRSQNEQRSWRYLDIINRMIDKPGSRSHRVILLGLFSTLLQA KGTLRLHKDARPLLLVEDPETRLHPIMLSVAWQLLNLLPLQRIATTNSGELLSLTPVE HVVRLVRESSRVAAWRLGPGGLSAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWV INELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATV RSLLNNDREEEREHLTALPALDMEHFMYRQGFADVFHRVAQLPPNVPMNTRKIITKAI HRSSKPDLAIEVAMEAGRRGIDAVPPLFRKMFSRVVWLARGRAD" misc_feature 1015863..1016987 /gene="ybjD" /locus_tag="STM0939" /note="Protein of unknown function (DUF2813); Region: DUF2813; pfam11398" /db_xref="CDD:431868" misc_feature 1016988..1017278 /gene="ybjD" /locus_tag="STM0939" /note="topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity; Region: TOPRIM_OLD; cd01026" /db_xref="CDD:173776" misc_feature order(1017015..1017020,1017027..1017029,1017174..1017176, 1017180..1017182) /gene="ybjD" /locus_tag="STM0939" /note="putative active site [active]" /db_xref="CDD:173776" misc_feature order(1017015..1017017,1017174..1017176) /gene="ybjD" /locus_tag="STM0939" /note="putative metal-binding site [ion binding]; other site" /db_xref="CDD:173776" gene complement(1017518..1018486) /gene="ybjX" /locus_tag="STM0940" /db_xref="GeneID:1252459" CDS complement(1017518..1018486) /gene="ybjX" /locus_tag="STM0940" /note="similar to E. coli putative enzyme (AAC73964.1); Blastp hit to AAC73964.1 (330 aa), 57% identity in aa 15 - 329" /codon_start=1 /transl_table=11 /product="homolog of virK" /protein_id="NP_459917.1" /db_xref="GeneID:1252459" /translation="MSRITIMTQLTDNTWYTSDYISPLQLFIRLTRGQLQPGKFWRKA SFRRKFLIRSLVMPRATSQLLTNLTQWPELNTLLARQPRLPIRLHRPYMAVNIKRDFA LDALCFHYQQMRQLLSREQQVSYLSQYGLNLAKFETKTGELFQLDLVSLVSLDKEGES TIVVRDAQLRILAEITFTLCRFNQQRTLFIGGLQGAANDVPHEIIQQATKACHGLFPK RIVMEALCQFAQVFQAEKIIAVSNDAHVYRSWRYMDKKTQMHADYDAFWESLGGERIK GNYYTLPLAIARKSEAEIASKKRAEYRRRYALLDSVVEQVPATFKR" misc_feature complement(1017521..1018417) /gene="ybjX" /locus_tag="STM0940" /note="Outer membrane protein VirK/YbjX involved in antimicrobial peptide resistance, DUF535 family [Function unknown]; Region: VirK; COG2990" /db_xref="CDD:442229" gene 1018604..1019732 /gene="ybjY" /locus_tag="STM0941" /db_xref="GeneID:1252460" regulatory 1018604..1018609 /regulatory_class="ribosome_binding_site" /gene="ybjY" /locus_tag="STM0941" /note="putative RBS for ybjY; RegulonDB:STMS1H001231" CDS 1018614..1019732 /gene="ybjY" /locus_tag="STM0941" /note="similar to E. coli putative membrane protein (AAC73965.1); Blastp hit to AAC73965.1 (380 aa), 83% identity in aa 12 - 378" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_459918.1" /db_xref="GeneID:1252460" /translation="MRAKGKKFKKRYLVIILILLVGGMAGWRMINAPLPTYQTLIVRP GDLEQSVLATGKLDALRKVDVGAQVSGQLKTLLVSIGDNVKKDQLLGVIDPDQAENQI KEVEATLMELNAERQQAAAELKLARVTLARQQQLAKTQAVSQQDLDTAATEMAVKQAR IGTIDAQIKRNRASLDTAKTNLEYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTL ADMSTMLVKAQVSEADVIHLRAGQKAWFTIAGDPQTRYEGVLKDILPTPEKINDAIFY YARFEVPNPKRILRLDMTAQVYIQLMDVKNVLIIPLAALGEPVGGNRYKVALLRNGEK REREVVIGERNDTDVEVVKGLEAGDEVIIGESRPGATP" misc_feature 1018623..1019726 /gene="ybjY" /locus_tag="STM0941" /note="macrolide transporter subunit MacA; Provisional; Region: PRK11578" /db_xref="CDD:183211" gene 1019716..1021675 /gene="ybjZ" /locus_tag="STM0942" /db_xref="GeneID:1252461" regulatory 1019716..1019721 /regulatory_class="ribosome_binding_site" /gene="ybjY" /locus_tag="STM0941" /note="putative RBS for ybjZ; RegulonDB:STMS1H001232" CDS 1019729..1021675 /gene="ybjZ" /locus_tag="STM0942" /note="similar to E. coli putative ATP-binding component of a transport system (AAC73966.1); Blastp hit to AAC73966.1 (648 aa), 83% identity in aa 1 - 648" /codon_start=1 /transl_table=11 /product="putative ABC superfamily (atp&memb) transport protein" /protein_id="NP_459919.1" /db_xref="GeneID:1252461" /translation="MTALLELCNVSRSYPSGEEQVAVLKDISLQIHAGEMVAIVGVSG SGKSTLMNILGCLDKPTSGTYRVAGRDVSTLDPDALAQLRREHFGFIFQRYHLLSHLT AAQNVEIPAVYAGIERKKRQARARELLLRLGLSDRVDYPPSQLSGGQQQRVSIARALM NGGQVILADEPTGALDSHSGEEVMAILRQLRDRGHTVIIVTHDPLIAAQAERIIEIHD GKIVHNPPAQEKKREQGVDAAVVNTAPGWRQFASSFREALSMAWLAMAANKMRTLLTM LGIIIGIASVVSIVVVGDAAKQMVLADIRAMGTNTIDIHPGKDFGDDNPQYRQALKYD DLVAIQKQPWVNSATPSVSKSLRLRYGNIDIAVNANGVSGDYFNVYGMSFREGNTFNA VQQQDRAQVVVLDANTRRQLFPNKANVVGEVVLAGNMPVIVIGVAEEKPSMYGNSNLL QVWLPYSTMSDRIMGQSWLNSITVRVKDGVDSDQAEQQLTRLLTLRHGKKDFFTWNMD SVLKTAEKTTYTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARAS DVLQQFLIEAVLVCLVGGALGISLSMFIAFMLQLFLPGWEIGFSLTALASAFLCSTFT GILFGWLPARNAARLDPVDALARE" misc_feature 1019729..1021672 /gene="ybjZ" /locus_tag="STM0942" /note="macrolide ABC transporter ATP-binding protein/permease MacB; Region: PRK10535" /db_xref="CDD:182528" gene complement(1021805..1022040) /gene="cspD" /locus_tag="STM0943" /db_xref="GeneID:1252462" CDS complement(1021805..1022026) /gene="cspD" /locus_tag="STM0943" /note="similar to E. coli cold shock protein (AAC73967.1); Blastp hit to AAC73967.1 (74 aa), 94% identity in aa 1 - 71" /codon_start=1 /transl_table=11 /product="CspA-like protein but not cold shock induced" /protein_id="NP_459920.1" /db_xref="GeneID:1252462" /translation="METGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKA GQSVRFDVHQGPKGNHASVIVPIEAEAVA" misc_feature complement(1021808..1022026) /gene="cspD" /locus_tag="STM0943" /note="Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains...; Region: S1_like; cl09927" /db_xref="CDD:471952" misc_feature complement(order(1021856..1021858,1021943..1021945, 1021976..1021978,1022003..1022005)) /gene="cspD" /locus_tag="STM0943" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:239905" misc_feature complement(order(1021937..1021948,1021967..1021987)) /gene="cspD" /locus_tag="STM0943" /note="RNA-binding motif [active]" /db_xref="CDD:239905" regulatory complement(1022035..1022040) /regulatory_class="ribosome_binding_site" /gene="cspD" /locus_tag="STM0943" /note="putative RBS for cspD; RegulonDB:STMS1H001233" gene 1022350..1022670 /gene="yljA" /locus_tag="STM0944" /db_xref="GeneID:1252463" CDS 1022350..1022670 /gene="yljA" /locus_tag="STM0944" /note="similar to E. coli orf, hypothetical protein (AAC73968.1); Blastp hit to AAC73968.1 (106 aa), 97% identity in aa 1 - 106" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459921.1" /db_xref="GeneID:1252463" /translation="MGKTNDWLDFDQLVEDSVRDALKPPSMYKVILVNDDYTPMEFVI DVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCT LEKA" misc_feature 1022350..1022667 /gene="yljA" /locus_tag="STM0944" /note="ATP-dependent Clp protease adaptor protein ClpS; Reviewed; Region: clpS; PRK00033" /db_xref="CDD:178809" gene 1022655..1024977 /gene="clpA" /locus_tag="STM0945" /db_xref="GeneID:1252464" regulatory 1022655..1022663 /regulatory_class="minus_35_signal" /gene="yljA" /locus_tag="STM0944" /note="putative -35_signal for clpA; RegulonDB:STMLTH004708" regulatory 1022679..1022687 /regulatory_class="minus_10_signal" /gene="clpA" /locus_tag="STM0945" /note="putative -10_signal for clpA; RegulonDB:STMLTH004708" regulatory 1022692..1022697 /regulatory_class="ribosome_binding_site" /gene="clpA" /locus_tag="STM0945" /note="putative RBS for clpA; RegulonDB:STMS1H001234" CDS 1022701..1024977 /gene="clpA" /locus_tag="STM0945" /note="similar to E. coli ATP-binding component of serine protease (AAC73969.1); Blastp hit to AAC73969.1 (758 aa), 97% identity in aa 1 - 758" /codon_start=1 /transl_table=11 /product="ATP-binding subunit of serine protease" /protein_id="NP_459922.1" /db_xref="GeneID:1252464" /translation="MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREAL EACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRSE VTGANVLVAIFSEQESQAAYLLRKHEVSRLDIVNFISHGTRKDEPSQSSDLGNQPTGD EQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGV GKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKD RALARRFQKIDITEPSVEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDR HLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLK NLGDRLKMLVFGQDNAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQL SKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEI EKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDN STDAMGEIKKVFTPEFRNRLDNIIWFDHLSGEVIHQVVDKFIVELQAQLDQKGVSLEV SQEARDWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKN ALTYDFQSAQKHKPEAAH" misc_feature 1022701..1024974 /gene="clpA" /locus_tag="STM0945" /note="ATP-dependent Clp protease ATP-binding subunit; Provisional; Region: clpA; PRK11034" /db_xref="CDD:236828" mobile_element 1025026..1025734 /mobile_element_type="insertion sequence:IS200_1" gene 1025163..1025627 /gene="tnpA_1" /locus_tag="STM0946" /db_xref="GeneID:1252465" regulatory 1025163..1025168 /regulatory_class="ribosome_binding_site" /gene="tnpA_1" /locus_tag="STM0946" /note="putative RBS for tnpA_1; RegulonDB:STMS1H001235" CDS 1025169..1025627 /gene="tnpA_1" /locus_tag="STM0946" /note="transposase for insertion sequence element is200 (SW:T200_SALTY)" /codon_start=1 /transl_table=11 /product="IS200 transposase" /protein_id="NP_459923.1" /db_xref="GeneID:1252465" /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKL CEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRN REFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK" misc_feature 1025181..1025552 /gene="tnpA_1" /locus_tag="STM0946" /note="Transposase IS200 like; Region: Y1_Tnp; cl00848" /db_xref="CDD:469954" gene complement(1026090..1026773) /locus_tag="STM0947" /db_xref="GeneID:1252466" CDS complement(1026090..1026773) /locus_tag="STM0947" /note="similar to E. coli IS150 putative transposase (AAC76582.1); Blastp hit to AAC76582.1 (283 aa), 29% identity in aa 109 - 279" /codon_start=1 /transl_table=11 /product="putative integrase protein" /protein_id="NP_459924.1" /db_xref="GeneID:1252466" /translation="MQADKTLNIGRDRLFNLLGEYRLLVPVKRAYHKTTNSHHRFYRH PNLLKPGPEQVTALEPEQVWVADITYLPLRSGTACLSLVTDACSRKIVGYHVGENLQT ENVVKAFRQALRRRKTTGPLVHHSDRGLQYCSVLYQSVHERNGITCSMTDGYDCYQNA LAERINGILKNEFLLSRPADLEQAREIVKESVAIYNHERPHLALKYKTPDDVHQAFYR QKTVNLYQD" misc_feature complement(1026117..>1026755) /locus_tag="STM0947" /note="Transposase InsO and inactivated derivatives [Mobilome: prophages, transposons]; Region: Tra5; COG2801" /db_xref="CDD:442053" gene complement(1026944..1027352) /locus_tag="STM0948" /db_xref="GeneID:1252467" CDS complement(1026944..1027345) /locus_tag="STM0948" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459925.1" /db_xref="GeneID:1252467" /translation="MMTEFKRTQRDYPLSFKIAVVEQVEKGEMTYKQAQQRYGIQGRS TVLVWLRKYGRLDWRPGLPDLVKRKLPVAQTTIPLTPEQRIRELEEQLELANQKAEFF ESVINVLKNDYGVSVVKKRPGKSSRKVRPPK" misc_feature complement(<1027010..1027300) /locus_tag="STM0948" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" regulatory complement(1027347..1027352) /regulatory_class="ribosome_binding_site" /locus_tag="STM0948" /note="putative RBS for STM0948; RegulonDB:STMS1H001236" gene complement(1027444..1027528) /gene="serW" /locus_tag="STM0949" /db_xref="GeneID:1252468" tRNA complement(1027444..1027528) /gene="serW" /locus_tag="STM0949" /product="tRNA-Ser" /db_xref="GeneID:1252468" gene complement(1027682..1028366) /locus_tag="STM0950" /db_xref="GeneID:1252469" CDS complement(1027682..1028359) /locus_tag="STM0950" /note="SlsA (gi|4324613)" /codon_start=1 /transl_table=11 /product="homolog of slsA in STM" /protein_id="NP_459926.1" /db_xref="GeneID:1252469" /translation="MSSPANFNGLRPVIDVNDSVMLLIDHQSGLFQTVGDMPMPELRA RAAALAKMATLAKMPVITTASVPQGPNGPLIPEIHANAPHAQYIARKGEINAWDNEDF VKAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITLAR IVQAGVVPMDTAAVASELQGTWNREDAAAWADVYTQVFPAYQLLIESYSKAQDVVKNN EMLDSQR" misc_feature complement(1027820..1028302) /locus_tag="STM0950" /note="YcaC related amidohydrolases; E.coli YcaC is an homooctameric hydrolase with unknown specificity. Despite its weak sequence similarity, it is structurally related to other amidohydrolases and shares conserved active site residues with them; Region: YcaC_related; cd01012" /db_xref="CDD:238494" misc_feature complement(order(1027988..1027990,1028090..1028092, 1028285..1028287)) /locus_tag="STM0950" /note="catalytic triad [active]" /db_xref="CDD:238494" misc_feature complement(order(1028129..1028131,1028267..1028269, 1028276..1028278)) /locus_tag="STM0950" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238494" misc_feature complement(1028000..1028005) /locus_tag="STM0950" /note="conserved cis-peptide bond [active]" /db_xref="CDD:238494" regulatory complement(1028361..1028366) /regulatory_class="ribosome_binding_site" /locus_tag="STM0950" /note="putative RBS for STM0950; RegulonDB:STMS1H001238" gene complement(1028379..1029247) /locus_tag="STM0951" /db_xref="GeneID:1252470" CDS complement(1028379..1029239) /locus_tag="STM0951" /note="similar to E. coli orf, hypothetical protein (AAC76464.1); Blastp hit to AAC76464.1 (231 aa), 27% identity in aa 52 - 222, 23% identity in aa 101 - 231" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459927.1" /db_xref="GeneID:1252470" /translation="MKQITGVYTAPRPHWVGDGFPVRSLFSYQSHAQQLSPFLLLDYA GPHTFTPGNEKRGVGEHPHRGFETVTIVYSGEVEHRDSTGRGGVIGPGDVQWMTAGAG ILHEEFHSDAFTRRGGELEMVQLWVNLPMKDKMTTPGYQSITHDVIPTVTLPDNAGVV RVIAGRYEETKGPAHTFSPLNVWDMRLQRNRQLTLAQPEGWSTALVVLKGNITVNGTT PVNEAQLVVLSQQGKTLHLEASSDASVLLLSGEPLNEPIVGYGPFVMNTKQEIAEAVR DFNSGRFGQI" misc_feature complement(1028406..1029206) /locus_tag="STM0951" /note="Redox-sensitive bicupin YhaK, pirin superfamily [General function prediction only]; Region: YhaK; COG1741" /db_xref="CDD:441347" regulatory complement(1029242..1029247) /regulatory_class="ribosome_binding_site" /locus_tag="STM0951" /note="putative RBS for STM0951; RegulonDB:STMS1H001239" gene 1029343..1030259 /locus_tag="STM0952" /db_xref="GeneID:1252471" regulatory 1029343..1029348 /regulatory_class="ribosome_binding_site" /locus_tag="STM0952" /note="putative RBS for STM0952; RegulonDB:STMS1H001240" CDS 1029348..1030259 /locus_tag="STM0952" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73313.1); Blastp hit to AAC73313.1 (304 aa), 31% identity in aa 1 - 291" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, lysR family" /protein_id="NP_459928.1" /db_xref="GeneID:1252471" /translation="MIKTDLNDFAWFVHVVEEGGFAAAGRALDEPKSKLSRRIAQLEE RLGVRLIQRTTRQFNVTEVGQTFYEHCKAMLVEAQAAQDAIAALQVEPRGIVKLTCPV TLLHVHIGPMLAKFMARYPDVSLQLEATNRRVDVVGEGVDVAIRVRPRPFEDSDLVMR VLADRGHRLFASPDLIARMGIPSAPAELSHWPGLSLASGKHIHRWELYGPQGARAEVH FTPRMITTDMLALREAAMAGVGLVQLPVLMVKEQLAAGELVAVLEEWEPRREVIHAVF PSRRGLLPSVRALVDFLTEEYARMVEE" misc_feature 1029354..1030256 /locus_tag="STM0952" /note="LysR family transcriptional regulator; Provisional; Region: PRK14997" /db_xref="CDD:184959" gene complement(1030350..1030577) /gene="infA" /locus_tag="STM0953" /db_xref="GeneID:1252472" CDS complement(1030350..1030568) /gene="infA" /locus_tag="STM0953" /note="similar to E. coli protein chain initiation factor IF-1 (AAC73970.1); Blastp hit to AAC73970.1 (72 aa), 100% identity in aa 1 - 72" /codon_start=1 /transl_table=11 /product="protein chain initiation factor IF-1" /protein_id="NP_459929.1" /db_xref="GeneID:1252472" /translation="MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNY IRILTGDKVTVELTPYDLSKGRIVFRSR" misc_feature complement(1030353..1030568) /gene="infA" /locus_tag="STM0953" /note="translation initiation factor IF-1; Validated; Region: infA; PRK00276" /db_xref="CDD:178954" misc_feature complement(order(1030371..1030373,1030377..1030379, 1030428..1030439,1030452..1030457,1030464..1030466, 1030500..1030502,1030518..1030526)) /gene="infA" /locus_tag="STM0953" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:239898" misc_feature complement(order(1030359..1030361,1030452..1030454, 1030464..1030466)) /gene="infA" /locus_tag="STM0953" /note="predicted 30S ribosome binding site [active]" /db_xref="CDD:239898" gene complement(1030496..1030885) /locus_tag="STM0954" /db_xref="GeneID:1252473" CDS complement(1030496..1030879) /locus_tag="STM0954" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459930.1" /db_xref="GeneID:1252473" /translation="MFSAHFLLGCYNCCRRIGLAHYPAARCQVTPIVYFTVPLYVALM SIHQAVVSGKRCITRRCRVSRNHVLNLVCCVLNAQIFTYQKKFGIILPVQIMVVIPQR IRWPKKTILKCKVPFSKRYLIPCSA" regulatory complement(1030572..1030577) /regulatory_class="ribosome_binding_site" /gene="infA" /locus_tag="STM0953" /note="putative RBS for infA; RegulonDB:STMS1H001241" gene complement(1030880..1031600) /gene="aat" /locus_tag="STM0955" /db_xref="GeneID:1252474" CDS complement(1030880..1031584) /gene="aat" /locus_tag="STM0955" /EC_number="2.3.2.6" /note="similar to E. coli leucyl, phenylalanyl-tRNA-protein transferase (AAC73971.1); Blastp hit to AAC73971.1 (234 aa), 82% identity in aa 1 - 234" /codon_start=1 /transl_table=11 /product="leucyl, phenylalanyl-tRNA-protein transferase" /protein_id="NP_459931.1" /db_xref="GeneID:1252474" /translation="MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQH GIFPWFSPGDPILWWSPDPRAVLWPEKFHLSRSMKRFHNASPYRVTLNYAFDRVIDGC ANHRDEGTWITRGIEEAYRRLHELGHAHSIEVWRDRELVGGMYGVSQGALFCGESMFS RQENASKTALLVFCAEFTRHGGKLIDCQVLNSHTASLGAIEIPRRDYLDHLAALRQQP LASRFWVPRTLFLPRK" misc_feature complement(1030928..1031548) /gene="aat" /locus_tag="STM0955" /note="Leu/Phe-tRNA-protein transferase [Posttranslational modification, protein turnover, chaperones]; Region: Aat; COG2360" /db_xref="CDD:441927" regulatory complement(1030880..1030885) /regulatory_class="ribosome_binding_site" /locus_tag="STM0954" /note="putative RBS for STM0954; RegulonDB:STMS1H001242" regulatory complement(1031595..1031600) /regulatory_class="ribosome_binding_site" /gene="aat" /locus_tag="STM0955" /note="putative RBS for aat; RegulonDB:STMS1H001243" gene complement(1031629..1033365) /gene="cydC" /locus_tag="STM0956" /db_xref="GeneID:1252475" CDS complement(1031629..1033350) /gene="cydC" /locus_tag="STM0956" /note="ABC superfamily (atp&memb); similar to E. coli ATP-binding component of cytochrome-related transport (AAC73972.1); Blastp hit to AAC73972.1 (573 aa), 86% identity in aa 1 - 573" /codon_start=1 /transl_table=11 /product="cytochrome-related transporter" /protein_id="NP_459932.1" /db_xref="GeneID:1252475" /translation="MRALLPYLTLYKRHKWMLTLGIALAILTLLASIGLLTLSGWFLS ASAIAGFAGIYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSK LLPLSPASLARYQQGELLNRIVADVDTLDHLYLRVISPLVGAFVVIMIVTLGLSVLDV TLAITLGGIMLLTLFIMPPVFYRAGKNTGQNLTHLRGQYRQQLTSWLQGQAELTIFGA SKRYRAQMEATELQWHEAQRRQSELTALSQALMLLIGALAVMLMLWMASGGVGGNTQP GALIALFVFCALAAFEALAPVTGAFQHLGQVIASALRITELTEQKPEVTFPQAETPAP EKVTLTLRDVSFRYPDQPINALNALSLQANPGEHVAILGRTGCGKSTLLQLLTRAWDP QQGEILLNDLPLSSLSESALRRTISVVPQRVHLFSATLRDNLLLAAPNASDEALSDML RRVGLENLLEDSGLNSWLGEGGRLLSGGELRRLAIARALLHDAPLMLLDEPTEGLDAT TESEMLELLADVMREKTVLMVTHRLRGLARFDQIIVMDDGHIIERGTHAELLAGQGRY YQFKQRL" misc_feature complement(1031632..1033350) /gene="cydC" /locus_tag="STM0956" /note="cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed; Region: PRK11160" /db_xref="CDD:236865" gene complement(1033351..1035117) /gene="cydD" /locus_tag="STM0957" /db_xref="GeneID:1252476" CDS complement(1033351..1035117) /gene="cydD" /locus_tag="STM0957" /note="Zn sensitive; ABC superfamily (atp&memb); similar to E. coli ATP-binding component of cytochrome-related transport, Zn sensitive (AAC73973.1); Blastp hit to AAC73973.1 (588 aa), 90% identity in aa 1 - 588" /codon_start=1 /transl_table=11 /product="cytochrome-related transporter" /protein_id="NP_459933.1" /db_xref="GeneID:1252476" /translation="MNKTRQKELTRWLKQQSVISQRWLNISRLLGFMSGVLIVAQAWI MARILQHMIMENIPREALLLPFILLILVFVLRAWVVWLRERVGFHAGQHIRFEIRRQV LDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVCVPLLIVAAIFP SNWAAALILLGTAPLIPLFMAMVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIF GRGEAETESIRAASQDFRQRTMEVLRLAFLSSGVLEFFTSLSIALVAVYFGFSYLGEL NFGHYGTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFLETPLAH PARGEVELAENEPVTIDAVNLIITSPEGKTLAGPLNFSLAAGERAVLVGRSGSGKSSL LNVLSGFLSYQGSLRINGVELRDLSPESWRQHLSWVGQNPQLPAATLRENVLLARPDA SEQELYAALDAAWVSEFLPLLPQGVDTPLGNHASRLSVGQAQRVAVARALLNPCQLLL LDEPAASLDAHSEQRVMQALKAASKRQTTLMVTHQLEDLADWDAIWVMQDGAIVEQGS YAELSAANGAFATLLAHRQEDI" misc_feature complement(1033354..1035117) /gene="cydD" /locus_tag="STM0957" /note="cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed; Region: PRK11174" /db_xref="CDD:236870" regulatory complement(1033360..1033365) /regulatory_class="ribosome_binding_site" /gene="cydC" /locus_tag="STM0956" /note="putative RBS for cydC; RegulonDB:STMS1H001244" gene complement(1035231..1036210) /gene="trxB" /locus_tag="STM0958" /db_xref="GeneID:1252477" CDS complement(1035231..1036199) /gene="trxB" /locus_tag="STM0958" /EC_number="1.8.1.9" /note="similar to E. coli thioredoxin reductase (AAC73974.1); Blastp hit to AAC73974.1 (321 aa), 96% identity in aa 1 - 320" /codon_start=1 /transl_table=11 /product="thioredoxin reductase" /protein_id="NP_459934.1" /db_xref="GeneID:1252477" /translation="MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQL TTTTEVENWPGDPNDLTGPLLMERMHEHAAKFETEIIFDHINNVDLQNRPFRLTGDSA EYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVE EALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGV TGLRLRDTQQSDNIETLDIAGLFVAIGHSPNTALFEGQLELENGYIKVQSGTHGNATQ TSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADASK" misc_feature complement(1035240..1036199) /gene="trxB" /locus_tag="STM0958" /note="thioredoxin reductase; Provisional; Region: PRK10262" /db_xref="CDD:182343" regulatory complement(1036205..1036210) /regulatory_class="ribosome_binding_site" /gene="trxB" /locus_tag="STM0958" /note="putative RBS for trxB; RegulonDB:STMS1H001245" protein_bind 1036409..1036423 /note="putative binding site for Lrp, RegulonDB: STMS1H000263" /bound_moiety="Lrp" protein_bind 1036519..1036533 /note="putative binding site for Lrp, RegulonDB: STMS1H000260" /bound_moiety="Lrp" gene 1036670..1037239 /gene="lrp" /locus_tag="STM0959" /db_xref="GeneID:1252478" regulatory 1036670..1036678 /regulatory_class="minus_35_signal" /gene="lrp" /locus_tag="STM0959" /note="putative -35_signal for lrp; RegulonDB:STMLTH004709" regulatory 1036698..1036706 /regulatory_class="minus_10_signal" /gene="lrp" /locus_tag="STM0959" /note="putative -10_signal for lrp; RegulonDB:STMLTH004709" regulatory 1036729..1036734 /regulatory_class="ribosome_binding_site" /gene="lrp" /locus_tag="STM0959" /note="putative RBS for lrp; RegulonDB:STMS1H001246" CDS 1036745..1037239 /gene="lrp" /locus_tag="STM0959" /note="mediator of of leucine response (AsnC family); leucine-responsive regulatory protein. (SW:LRP_SALTY)" /codon_start=1 /transl_table=11 /product="regulator for lrp regulon and high-affinity branched-chain amino acid transport system" /protein_id="NP_459935.1" /db_xref="GeneID:1252478" /translation="MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTP CLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNAAVQKLEE IQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLV IKTR" misc_feature 1036745..1037236 /gene="lrp" /locus_tag="STM0959" /note="leucine-responsive transcriptional regulator Lrp; Region: PRK11169" /db_xref="CDD:183009" gene 1037360..1041429 /gene="ftsK" /locus_tag="STM0960" /db_xref="GeneID:1252479" regulatory 1037360..1037365 /regulatory_class="ribosome_binding_site" /gene="ftsK" /locus_tag="STM0960" /note="putative RBS for ftsK; RegulonDB:STMS1H001247" CDS 1037374..1041429 /gene="ftsK" /locus_tag="STM0960" /note="required for cell division and chromosome partitioning; similar to E. coli cell division protein (AAC73976.1); Blastp hit to AAC73976.1 (1329 aa), 63% identity in aa 263 - 843" /codon_start=1 /transl_table=11 /product="cell division protein" /protein_id="NP_459936.1" /db_xref="GeneID:1252479" /translation="MSQEYTEDKDVTLTKLSSGRRLLEALLILIALFAVWLMAALLSF NPSDPSWSQTAWHEPIHNLGGAPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQS TDDYIDYFAVSLRLIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHS SGGTIMLLCIWAAGLTLFTGWSWVSIAEKLGGWLLNILTFASNRTRRDDTWVDDEEYD DEYDEETDGVQRESRRARILRGALARRKRLAEKFSNPRGRQTDAALFSGKRMDDDEDI QYSARGVAADPDDVLFSGNRATQPEYDEYDPLLNGHSVTEPVAAAAAATAVTQTWAAS ADPIMQTPPMPGAEPVVAQPTVEWQPVPGPQTGEPVIAPAPEGYQPHPQYAQPQEAQS APWQQPVPVASAPQYAATPATAAEYDSLAPQETQPQWQPEPTHQPTPVYQPEPIAAEP SHMPPPVIEQPVATEPEPDTEETRPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPV KENVPVKPTVSVAPSIPPVEAVAAAASLDAGIKSGALAAGAAAAAPAFSLATGGAPRP QVKEGIGPQLPRPNRVRVPTRRELASYGIKLPSQRIAEEKAREAERNQYETGAQLTDE EIDAMHQDELARQFAQSQQHRYGETYQHDTQQAEDDDTAAEAELARQFAASQQQRYSG EQPAGAQPFSLDDLDFSPMKVLVDEGPHEPLFTPGVMPESTPVQQPVAPQPQPQYQQP QQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAP QPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPTAPQDSLIHPLLMRNGDSRPLQ RPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITR FELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLRE VLDNAKFRENPSPLTVVLGKDIAGDPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSM LYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWSVNEMERRYKL MSALGVRNLAGYNEKIAEAARMGRPIPDPYWKPGDSMDVQHPVLEKLPYIVVLVDEFA DLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSS KIDSRTILDQGGAESLLGMGDMLYSGPNSTMPVRVHGAFVRDQEVHAVVQDWKARGRP QYVDGITSDSESEGGGGGFDGGEELDALFDQAVNFVTQKRKASISGVQRQFRIGYNRA ARIIEQMEAQGIVSAQGHNGNREVLAPPPFE" misc_feature 1037374..1041426 /gene="ftsK" /locus_tag="STM0960" /note="DNA translocase FtsK; Provisional; Region: PRK10263" /db_xref="CDD:236669" gene 1041561..1042183 /gene="lolA" /locus_tag="STM0961" /db_xref="GeneID:1252480" regulatory 1041561..1041566 /regulatory_class="ribosome_binding_site" /gene="lolA" /locus_tag="STM0961" /note="putative RBS for lolA; RegulonDB:STMS1H001248" CDS 1041569..1042183 /gene="lolA" /locus_tag="STM0961" /note="affects translocation of lipoproteins from inner membrane to outer membrane; similar to E. coli periplasmic protein effects translocation of lipoproteins from inner membrane to outer (AAC73977.1); Blastp hit to AAC73977.1 (204 aa), 94% identity in aa 1 - 204" /codon_start=1 /transl_table=11 /product="periplasmic protein" /protein_id="NP_459937.1" /db_xref="GeneID:1252480" /translation="MMKKMAIACALLSSVVASSVWADAASSLKSRLDKVSSFHATFTQ KVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATW LKDATGNTPFMLIARNQASDWQQYNIKQDGDNFVLTPKASNGNLKQFTINVGRDGTIH QFSAVEQDDQRSAYQLKSQQNGAVDPSKFTFTPPQGVTIDDQRK" misc_feature 1041572..1042180 /gene="lolA" /locus_tag="STM0961" /note="family containing periplasmic molecular chaperone LolA, the outer membrane lipoprotein receptor LolB and the periplasmic protein RseB; Region: LolA_fold-like; cl19192" /db_xref="CDD:473147" misc_feature order(1041686..1041688,1041692..1041694,1041698..1041700, 1041704..1041706,1041737..1041739,1041743..1041745, 1041749..1041751,1041779..1041781,1041785..1041787, 1041803..1041805,1041809..1041811,1041836..1041838, 1041842..1041844,1041977..1041979,1042013..1042015, 1042019..1042021,1042043..1042045,1042052..1042054, 1042058..1042060,1042082..1042084,1042088..1042090, 1042094..1042096) /gene="lolA" /locus_tag="STM0961" /note="hydrophobic core; other site" /db_xref="CDD:319983" gene 1042183..1043536 /gene="ycaJ" /locus_tag="STM0962" /db_xref="GeneID:1252481" regulatory 1042183..1042188 /regulatory_class="ribosome_binding_site" /gene="ycaJ" /locus_tag="STM0962" /note="putative RBS for ycaJ; RegulonDB:STMS1H001249" CDS 1042193..1043536 /gene="ycaJ" /locus_tag="STM0962" /note="similar to E. coli putative polynucleotide enzyme (AAC73978.1); Blastp hit to AAC73978.1 (447 aa), 97% identity in aa 1 - 447" /codon_start=1 /transl_table=11 /product="putative polynucleotide enzyme" /protein_id="NP_459938.1" /db_xref="GeneID:1252481" /translation="MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRA IEAGHLHSMILWGPPGTGKTTLAEVIARYASADVERISAVTSGVKEIREAIERARQNR NAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVY LLKSLTTDDIEQVLDQAMQDKTRGYGDQDIVLPDETRRAIAELVNGDARRALNTLEMM ADMAEADDSGKRVLLPALLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALY WYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIA QAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYA HDEPNAYAAGEVYFPPEIAQTRYYHPTNRGLEGKIGEKLAWLAEQDQNSPTKRYR" misc_feature 1042193..1043518 /gene="ycaJ" /locus_tag="STM0962" /note="Replication-associated recombination protein RarA (DNA-dependent ATPase) [Replication, recombination and repair]; Region: RarA; COG2256" /db_xref="CDD:441857" gene 1043785..1045087 /gene="serS" /locus_tag="STM0963" /db_xref="GeneID:1252482" regulatory 1043785..1043790 /regulatory_class="ribosome_binding_site" /gene="serS" /locus_tag="STM0963" /note="putative RBS for serS; RegulonDB:STMS1H001250" CDS 1043795..1045087 /gene="serS" /locus_tag="STM0963" /EC_number="6.1.1.11" /note="also charges selenocystein tRNA with serine; similar to E. coli serine tRNA synthetase; also charges selenocystein tRNA with serine (AAC73979.1); Blastp hit to AAC73979.1 (430 aa), 97% identity in aa 1 - 430" /codon_start=1 /transl_table=11 /product="serine tRNA synthetase" /protein_id="NP_459939.1" /db_xref="GeneID:1252482" /translation="MLDPNLLRNEPDAVAEKLARRGFKLDVDKLRALEERRKVLQVNT ENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDTLLAEIRDIALT IPNLPADEVPVGKDENDNVEVSRWGTPREFDFEIRDHVTLGEMHSGLDFAAAVKLTGS RFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNHDTLYGTGQLPKFAGDLF HTRPLEEEADSSNYALIPTAEVPLTNLVRDEIIDEDQLPIKMTAHTPCFRSEAGSYGR DTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMG FGACKTYDLEVWVPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSG LAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG" misc_feature 1043795..1045084 /gene="serS" /locus_tag="STM0963" /note="seryl-tRNA synthetase; Provisional; Region: PRK05431" /db_xref="CDD:235461" protein_bind 1044965..1044985 /gene="serS" /locus_tag="STM0963" /note="putative binding site for NarL, RegulonDB: STMS1H000312" /bound_moiety="NarL" protein_bind 1044994..1045003 /gene="serS" /locus_tag="STM0963" /note="putative binding site for FNR, RegulonDB: STMS1H000162" /bound_moiety="FNR" protein_bind 1045085..1045105 /note="putative binding site for NarL, RegulonDB: STMS1H000317" /bound_moiety="NarL" protein_bind 1045163..1045183 /note="putative binding site for NarL, RegulonDB: STMS1H000308" /bound_moiety="NarL" gene 1045269..1047768 /gene="dmsA" /locus_tag="STM0964" /db_xref="GeneID:1252483" regulatory 1045269..1045277 /regulatory_class="minus_35_signal" /gene="dmsA" /locus_tag="STM0964" /note="putative -35_signal for dmsA; RegulonDB:STMLTH004710" regulatory 1045296..1045304 /regulatory_class="minus_10_signal" /gene="dmsA" /locus_tag="STM0964" /note="putative -10_signal for dmsA; RegulonDB:STMLTH004710" regulatory 1045307..1045312 /regulatory_class="ribosome_binding_site" /gene="dmsA" /locus_tag="STM0964" /note="putative RBS for dmsA; RegulonDB:STMS1H001251" CDS 1045324..1047768 /gene="dmsA" /locus_tag="STM0964" /EC_number="1.8.99.-" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1); Blastp hit to AAC73980.1 (785 aa), 93% identity in aa 1 - 784" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase, subunit A" /protein_id="NP_459940.1" /db_xref="GeneID:1252483" /translation="MKTKIPDAVLAAEVSRRGLVKTTAIGGLAMASSAFTLPFTRIAN AAEAISPAKTGEKVVWSACTVNCGSRCPLRMHVVDGEIKYVETDNTGNDDYDGLHQVR ACLRGRSMRRRVYNPDRLKYPMKRVGARGEGKFERISWDEAYDIIATNMQRLIKEYGN ESIYLNYGTGTLGGTLTRSWPPGKTLVARLMNCCGGYLNHYGDYSSAQIAAGLNYTYG GWADGNSPSDIENSKLVVLFGNNPGETRMSGGGVTYYLEQARQKSNARMIIIDPRYTD TGAGREDEWIPIRPGTDAALVNGLAYVLITENMVDQPFLDKYCVGYDEKTLPASAPKN GHYKAYILGQGKDGIAKTPEWAAQITGIPADRIIKLAREIGSAKPAYICQGWGPQRHA NGEIATRAISMLAILTGNVGINGGNSGAREGSYALPFERMPTLENPVETSISMFMWTD AIERGPEMTALRDGVRGKDKLDVPIKMIWNYAGNCLINQHSEINRTHEILQDDKKCEM IVVIDCHMTSSAKYADILLPDCTASEQMDFALDASCGNMSYVIFTDQAIKPRFECKTI YEMTSELAKRLGVEQQFTEGRTQEEWMRHLYEQSRKSIPNLPTFEEFRKQGIFKQRDP EGHHVAYKDFREDPQANPLTTPSGKIEIYSQALADIAATWELPEGDVIDPLPIYTPGF ENYNDPLTDKFPLQLTGFHYKARVHSTYGNVDVLKAACRQEMWINPMDAQKRGINNGD KVRIFNDRGEVHIEAKVTPRMMPGVVALGEGAWYDPDAKRVDQGGCINVLTTQRPSPL AKGNPSHTNLVQVEKA" misc_feature 1045324..1047762 /gene="dmsA" /locus_tag="STM0964" /note="anaerobic dimethyl sulfoxide reductase subunit A; Provisional; Region: PRK14990" /db_xref="CDD:184952" gene 1047767..1048396 /gene="dmsB" /locus_tag="STM0965" /db_xref="GeneID:1252484" regulatory 1047767..1047772 /regulatory_class="ribosome_binding_site" /gene="dmsB" /locus_tag="STM0965" /note="putative RBS for dmsB; RegulonDB:STMS1H001252" CDS 1047779..1048396 /gene="dmsB" /locus_tag="STM0965" /EC_number="1.8.99.-" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); Blastp hit to AAC73981.1 (205 aa), 96% identity in aa 1 - 205" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase, subunit B" /protein_id="NP_459941.1" /db_xref="GeneID:1252484" /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPDVSFRRIYEYAG GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGC RYCHMACPYGAPQYNAAKGHMTKCDGCYDRVAEGKKPICVESCPLRALDFGPIDELRK KHGELAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV" misc_feature 1047788..1048267 /gene="dmsB" /locus_tag="STM0965" /note="DMSO reductase, iron-sulfur subunit; Region: DMSO_dmsB; TIGR02951" /db_xref="CDD:131996" gene 1048385..1049261 /gene="dmsC" /locus_tag="STM0966" /db_xref="GeneID:1252485" regulatory 1048385..1048390 /regulatory_class="ribosome_binding_site" /gene="dmsB" /locus_tag="STM0965" /note="putative RBS for dmsC; RegulonDB:STMS1H001253" CDS 1048398..1049261 /gene="dmsC" /locus_tag="STM0966" /EC_number="1.8.99.-" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); Blastp hit to AAC73982.1 (287 aa), 89% identity in aa 1 - 287" /codon_start=1 /transl_table=11 /product="anaerobic dimethyl sulfoxide reductase, subunit C" /protein_id="NP_459942.1" /db_xref="GeneID:1252485" /translation="MGSGWHEWPLMIFTVFGQCVAGGFIVLALALMKGDLRAETQQRV IACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSVFFAVGGIGW LLAVLKKLPPALRTLWLIITMVLGVVFVWMMVRVYNSIDTVPTWYSVWTPLGFFLTLF MGGPLLGYLLLRIAGVNGWAMRLLPAVSVLALVVIAIMVAMQGAELATIHSSIQQASA LVPDYGSLMAWRMVLLAAALCCWIVPQLKGYQPAVPLLSVAFILMLAGELIGRGVFYG LHMTVGMAVAS" misc_feature 1048398..1049228 /gene="dmsC" /locus_tag="STM0966" /note="DMSO reductase anchor subunit (DmsC); Region: DmsC; pfam04976" /db_xref="CDD:398575" gene 1049598..1050759 /gene="ycaD" /locus_tag="STM0968" /db_xref="GeneID:1252486" regulatory 1049598..1049603 /regulatory_class="ribosome_binding_site" /gene="ycaD" /locus_tag="STM0968" /note="putative RBS for ycaD; RegulonDB:STMS1H001255" CDS 1049611..1050759 /gene="ycaD" /locus_tag="STM0968" /note="similar to E. coli putative transport (AAC73984.1); Blastp hit to AAC73984.1 (382 aa), 88% identity in aa 1 - 382" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_459943.1" /db_xref="GeneID:1252486" /translation="MSTYTRPVMLLLCGLLLLTLAIAVLNTLVPLWLAQANLPTWQVG MVSSSYFTGNLVGTLFTGYLIKRIGFNRSYYLASLIFAAGCVGLGVMVGFWSWMSWRF IAGIGCAMIWVVVESALMCSGTSHNRGRLLAAYMMVYYMGTFLGQLLVSKVSGELLHV LPWVTGMILAGILPLLFTRIVNQQTQARHSSSISAMLKLRQARLGVNGCIISGIVLGS LYGLMPLYLKHQGMANASIGFWMAVLVSAGILGQWPMGRLADKFGRLLVLRVQVFVVI LGSIAMLTQAAMAPALFILGAAGFTLYPVAMAWACEKVEHHQLVAMNQALLLSYTVGS LLGPSFAAMLMQNYSDNLLFIMIASVSFIYLLMLLRNAGQTPNPVAHI" misc_feature 1049611..1050753 /gene="ycaD" /locus_tag="STM0968" /note="putative MFS family transporter protein; Provisional; Region: PRK03633" /db_xref="CDD:179614" gene 1050965..1052398 /gene="ycaM" /locus_tag="STM0969" /db_xref="GeneID:1252487" regulatory 1050965..1050970 /regulatory_class="ribosome_binding_site" /gene="ycaM" /locus_tag="STM0969" /note="putative RBS for ycaM; RegulonDB:STMS1H001256" CDS 1050977..1052398 /gene="ycaM" /locus_tag="STM0969" /note="similar to E. coli putative transport (AAC73985.1); Blastp hit to AAC73985.1 (540 aa), 93% identity in aa 68 - 536" /codon_start=1 /transl_table=11 /product="putative APC family, amino-acid transporter" /protein_id="NP_459944.1" /db_xref="GeneID:1252487" /translation="MPNVQEKQLRWYNIALMSFITVWGFGNVVNNYANQGLVVVFSWV FIFALYFIPYALIVGQLGSTFKEGKGGVSTWIKHTMGPGLAYLAAWTYWVVHIPYLAQ KPQAILIALGWALKGDGSLIKEYTVVALQGLTLALFVFFMWVASRGMKSLKVVGSVAG IAMFIMSILYVVMAVTAPAITNVEIATTNITWQSFIPHIDFTYITTISMLVFAVGGAE KISPYVNQTRNPGKEFPKGMLFLAVMVAVCAILGSLAMGMMFDSRHIPDDLMTNGQYY AFQKLGEYYHMGNSLMVIYAIANTLGQIAALVFSIDAPLKVLLGDADTKYIPQRLCRT NASGTPVNGYLLTLVLVAILIMLPTLGIGDMNNLYKWLLNLNSVVMPLRYLWVFVAFI AVIRLAQKYKPEYVFIRNRALALTVGIWCFAFTAFACLTGIFPKMEAFTPEWTFQLTL NIVTPFVLVGLGLIFPLLARRNT" misc_feature 1050995..1052389 /gene="ycaM" /locus_tag="STM0969" /note="Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism]; Region: PotE; COG0531" /db_xref="CDD:440297" gene complement(1052691..1053515) /gene="pflA" /locus_tag="STM0970" /db_xref="GeneID:1252488" CDS complement(1052691..1053515) /gene="pflA" /locus_tag="STM0970" /EC_number="1.97.1.4" /note="similar to E. coli pyruvate formate lyase activating enzyme 1 (AAC73988.1); Blastp hit to AAC73988.1 (246 aa), 97% identity in aa 3 - 246" /codon_start=1 /transl_table=11 /product="pyruvate formate lyase activating enzyme 1" /protein_id="NP_459945.3" /db_xref="GeneID:1252488" /translation="MLFRASRSDMSNLTNCITNESVAVTADKKPVIGRIHSFESCGTV DGPGIRFITFFQGCLMRCLYCHNRDTWDTHGGKEITVEDLMKEVVTYRHFMNASGGGV TASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLDVTDLVMLDLK QMNDEIHQNLVGVSNHRTLEFAQYLSKKNVKVWIRYVVVPGWSDDDDSAHRLGEFTRD MGNVEKIELLPYHELGKHKWVAMGEEYKLDGVKPPKKETMERVKGILEQYGHKVMY" misc_feature complement(1052694..1053425) /gene="pflA" /locus_tag="STM0970" /note="pyruvate formate lyase 1-activating protein; Region: pflA; PRK11145" /db_xref="CDD:182994" gene complement(1053607..1053936) /locus_tag="STM0971" /db_xref="GeneID:1252489" CDS complement(1053607..1053933) /locus_tag="STM0971" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459946.1" /db_xref="GeneID:1252489" /translation="MRVECDARRWTAHNVLWTHLNYVENYFRSDHNKTAPTIRKKRRI INSKTRALWMIHLQYVLRLRRYELMNEPEFLAVRVMQHRFAVYFILNRGKIAPLQHIL EQPHIL" regulatory complement(1053931..1053936) /regulatory_class="ribosome_binding_site" /locus_tag="STM0971" /note="putative RBS for STM0971; RegulonDB:STMS1H001257" gene 1054059..1055023 /locus_tag="STM0972" /db_xref="GeneID:1252490" regulatory 1054059..1054064 /regulatory_class="ribosome_binding_site" /locus_tag="STM0972" /note="putative RBS for STM0972; RegulonDB:STMS1H001258" CDS 1054064..1055023 /locus_tag="STM0972" /codon_start=1 /transl_table=11 /product="homologous to secreted protein sopD" /protein_id="NP_459947.1" /db_xref="GeneID:1252490" /translation="MPVTLSFGNRHNYEINHSRLARLMSPDKEEALYMGVWDRFKDCF RTHKKQEVLEVLYTLIHGCERENQAELNVDITGMEKIHAFTQLKEYANPSQQDRFVMR FDMNQTQVLFEIDGKVIDKCNLHRLLNVSENCIFKVMEEDEEELFLKICIKYGEKISR YPELLEGFANKLKDAVNEDDDVKDEVYKLMRSGEDRKMECVEWNGTLTEEEKNKLRCL QMGSFNITTQFFKIGYWELEGEVLFDMVHPTLSYLLQAYKPSLSSDLIETNTMLFSDV LNKDYDDYQNNKREIDAILRRIYRSHNNTLFISEKSSCRNMLI" misc_feature 1054064..1055020 /locus_tag="STM0972" /note="type III secretion system effector SopD2; Region: PRK15380" /db_xref="CDD:185278" gene complement(1055099..1057510) /gene="pflB" /locus_tag="STM0973" /db_xref="GeneID:1252491" CDS complement(1055099..1057381) /gene="pflB" /locus_tag="STM0973" /EC_number="2.3.1.54" /note="similar to E. coli formate acetyltransferase 1 (AAC73989.1); Blastp hit to AAC73989.1 (760 aa), 96% identity in aa 1 - 760" /codon_start=1 /transl_table=11 /product="pyruvate formate lyase I, induced anaerobically" /protein_id="NP_459948.1" /db_xref="GeneID:1252491" /translation="MSELNEKLATAWEGFTKGDWQNEVNVRDFIQKNYTPYEGDESFL AGATDATTKLWDSVMEGVKQENRTHAPVDFDTSVASTITSHDAGYINKALEKIVGLQT EAPLKRAIIPFGGIKMVEGSCKAYNRELDPMIKKIFTEYRKTHNQGVFDVYTPDILRC RKSGVLTGLPDAYGRGRIIGDYRRVALYGIDYLMKDKFAQFTSLQSDLENGVNLEATI RLREEIAEQHRALGQIKEMAAKYGCDISGPATNAQEAIQWTYFGYLAAVKSQNGAAMS FGRVSTFLDAYIERDLKAGKITEQDAQEMIDHLVMKLRMVRFLRTPEYDELFSGDPIW ATESIGGMGVDGRTLVTKNSFRFLNTLYTMGPSPEPNITVLWSEKLPLNFKKFAAKVS IDTSSLQYENDDLMRPDFNNDDYAIACCVSPMIVGKQMQFFGARANLAKTMLYAINGG VDEKLKMQVGPKSEPIKGDVLNFDEVMDRMDHFMDWLAKQYVTALNVIHYMHDKYSYE ASLMALHDRDVIRTMACGIAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQ FGNNDARVDDMAVDLVERFMKKIQKLTTYRGAIPTQSVLTITSNVVYGKKTGNTPDGR RAGAPFGPGANPMHGRDQKGAVASLTSVAKLPFAYAKDGISYTFSIVPNALGKDDEVR KTNLAGLMDGYFHHEASIEGGQHLNVNVMNREMLLDAMEHPEKYPQLTIRVSGYAVRF NSLTKEQQQDVITRTFTQTM" misc_feature complement(1055114..1057351) /gene="pflB" /locus_tag="STM0973" /note="Pyruvate formate lyase 1; Region: PFL1; cd01678" /db_xref="CDD:153087" misc_feature complement(order(1056896..1056901,1056908..1056910, 1056923..1056925,1056929..1056934,1056941..1056946, 1057028..1057033)) /gene="pflB" /locus_tag="STM0973" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:153087" misc_feature complement(order(1055561..1055563,1055567..1055569, 1056074..1056076,1056083..1056085,1056125..1056127, 1056380..1056382,1056398..1056400,1056560..1056565, 1056851..1056853)) /gene="pflB" /locus_tag="STM0973" /note="active site" /db_xref="CDD:153087" misc_feature complement(order(1055177..1055179,1056122..1056127)) /gene="pflB" /locus_tag="STM0973" /note="catalytic residues [active]" /db_xref="CDD:153087" misc_feature complement(1055174..1055188) /gene="pflB" /locus_tag="STM0973" /note="glycine loop [active]" /db_xref="CDD:153087" regulatory complement(1057390..1057395) /regulatory_class="ribosome_binding_site" /gene="pflB" /locus_tag="STM0973" /note="putative RBS for pflB; RegulonDB:STMS1H001259" gene complement(1057441..1058474) /gene="focA" /locus_tag="STM0974" /db_xref="GeneID:1252492" CDS complement(1057441..1058298) /gene="focA" /locus_tag="STM0974" /note="formate channel 1; putative FNT family member; similar to E. coli probable formate transporter (formate channel 1) (AAC73990.1); Blastp hit to AAC73990.1 (285 aa), 95% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="formate transporter" /protein_id="NP_459949.1" /db_xref="GeneID:1252492" /translation="MKADNPFDLLLPAAMAKVAEEAGVYKATKHPLKTFYLAITAGVF ISIAFVFYITATTGTGAMPYGMAKLIGGICFSLGLILCVICGADLFTSTVLIVVAKAS GRITWGQLAKNWLNVYFGNLIGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKMHHT FIEAVCLGILANLMVCLAVWMSYSGRSLMDKAFIMVLPVAMFVASGFEHSIANMFMIP MGIVIRDFATPEFWTAVGSSPESFSHLTVMSFITDNLIPVTIGNIIGGGLLVGLTYWV IYLRGNEHH" misc_feature complement(1057444..1058298) /gene="focA" /locus_tag="STM0974" /note="formate transporter; Provisional; Region: PRK10805" /db_xref="CDD:182746" regulatory complement(1057483..1057491) /regulatory_class="minus_10_signal" /gene="focA" /locus_tag="STM0974" /note="putative -10_signal for pflB; RegulonDB:STMLTH004711" regulatory complement(1057502..1057510) /regulatory_class="minus_35_signal" /gene="focA" /locus_tag="STM0974" /note="putative -35_signal for pflB; RegulonDB:STMLTH004711" regulatory complement(1058305..1058310) /regulatory_class="ribosome_binding_site" /gene="focA" /locus_tag="STM0974" /note="putative RBS for focA; RegulonDB:STMS1H001260" protein_bind complement(1058416..1058427) /gene="focA" /locus_tag="STM0974" /note="putative binding site for ArcA, RegulonDB: STMS1H000024" /bound_moiety="ArcA" regulatory complement(1058447..1058455) /regulatory_class="minus_10_signal" /gene="focA" /locus_tag="STM0974" /note="putative -10_signal for focA; RegulonDB:STMLTH004712" regulatory complement(1058466..1058474) /regulatory_class="minus_35_signal" /gene="focA" /locus_tag="STM0974" /note="putative -35_signal for focA; RegulonDB:STMLTH004712" protein_bind complement(1058525..1058545) /note="putative binding site for NarL, RegulonDB: STMS1H000307" /bound_moiety="NarL" protein_bind complement(1058531..1058551) /note="putative binding site for CRP, RegulonDB: STMS1H000076" /bound_moiety="CRP" protein_bind complement(1058545..1058569) /note="putative binding site for FNR, RegulonDB: STMS1H000158" /bound_moiety="FNR" protein_bind complement(1058593..1058613) /note="putative binding site for NarL, RegulonDB: STMS1H000321" /bound_moiety="NarL" protein_bind complement(1058617..1058642) /note="putative binding site for IHF, RegulonDB: STMS1H000226" /bound_moiety="IHF" protein_bind complement(1058623..1058685) /note="putative binding site for ArcA, RegulonDB: STMS1H000022" /bound_moiety="ArcA" protein_bind complement(1058633..1058653) /note="putative binding site for NarL, RegulonDB: STMS1H000311" /bound_moiety="NarL" protein_bind complement(1058635..1058697) /note="putative binding site for ArcA, RegulonDB: STMS1H000014" /bound_moiety="ArcA" gene complement(1058703..1060463) /gene="ycaO" /locus_tag="STM0975" /db_xref="GeneID:1252493" CDS complement(1058703..1060463) /gene="ycaO" /locus_tag="STM0975" /note="similar to E. coli orf, hypothetical protein (AAC73991.1); Blastp hit to AAC73991.1 (589 aa), 93% identity in aa 4 - 589" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459950.1" /db_xref="GeneID:1252493" /translation="MTQTFIPGKDAALEDSIARFQQKLLDLGFHIEEASWLNPVPNVW SVHIRDKECALCFTNGKGATKKAALASALGEYFERLSTNYFFADFWLGETVANGPFVH YPNEKWFPLTENDDVPEGLLDARLRAFYDPENELTGSQLIDLQSGNEARGVCGLPFTR QSDNQTVYIPMNIIGNLYVSNGMSAGNTRNEARVQGLSEVFERYVKNRIIAESISLPE IPAEVMARYPAVMESIATLEAEGFPIFAYDGSLGGKYPVICVVLFNPANGTCFASFGA HPDFGVALERTVTELLQGRGLKDLDVFTPPTFDDEEVAEHTNLETHFIDSSGLISWDL FKQDADYPFTDWSFSGTTEEEFATLMAIFAAEDKEVYIADYEHLGVYACRIIVPGMSD IYPAEDLWLANNNMGSHLRETLLSLPGSAWNKEDYLNLIEQLDEEGFDDFTRVRELLG LATGADNGWYTLRVGELKAMLALAGGDLEQALIWTEWTMEFNSSVFSPTRANYYRCLQ TLLLLSQEDARQPLQYLNAFIKMYGAEAVEAASAALSGEAAFYGLPAVDHDLQAFPAH QSLLKAYDKLQRAKAAYWSK" misc_feature complement(1058730..1060454) /gene="ycaO" /locus_tag="STM0975" /note="30S ribosomal protein S12 methylthiotransferase accessory factor YcaO; Region: YcaO_for_S12; NF040716" /db_xref="CDD:468680" gene 1060583..1061292 /gene="ycaP" /locus_tag="STM0976" /db_xref="GeneID:1252494" regulatory 1060583..1060588 /regulatory_class="ribosome_binding_site" /gene="ycaP" /locus_tag="STM0976" /note="putative RBS for ycaP; RegulonDB:STMS1H001261" CDS 1060600..1061292 /gene="ycaP" /locus_tag="STM0976" /note="similar to E. coli orf, hypothetical protein (AAC73992.1); Blastp hit to AAC73992.1 (230 aa), 86% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459951.1" /db_xref="GeneID:1252494" /translation="MKAFDLQRMALDNVPVAFLGEVALRSFYTFVLVFLFLKVTGRRG VRQMSLFEVLIILTLGSAAGDVAFYDDVPMLPVLVVFITLALLYRLVMWLMAHSEKLE DLLEGKSVVIVEDGELAWEKLQRSNMTEFEFFMELRLNGVEQLGQVRLAILETNGQIS VYFFENKDVKPGLSILPEHCTPRFIVAPEAGDYACVRCSEVIRMNAGEKQLCPRCANP EWTKASRAKRVV" misc_feature 1060639..1061100 /gene="ycaP" /locus_tag="STM0976" /note="Uncharacterized membrane protein YcaP, DUF421 family [Function unknown]; Region: YcaP; COG2323" /db_xref="CDD:441897" gene 1061470..1062566 /gene="serC" /locus_tag="STM0977" /db_xref="GeneID:1252495" regulatory 1061470..1061475 /regulatory_class="ribosome_binding_site" /gene="serC" /locus_tag="STM0977" /note="putative RBS for serC; RegulonDB:STMS1H001262" CDS 1061478..1062566 /gene="serC" /locus_tag="STM0977" /EC_number="2.6.1.52" /note="(SW:SERC_SALTY); phosphohydroxythreonine transaminase" /codon_start=1 /transl_table=11 /product="3-phosphoserine aminotransferase" /protein_id="NP_459952.1" /db_xref="GeneID:1252495" /translation="MAQVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGK EFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNLLGDKTTADYVDAGYW AASAIKEAKKYCAPQIIDAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDGIAID ETPDFGPEVVVTADFSSTILSAPLDVSRYGVIYAGAQKNIGPAGLTLVIVREDLLGKA HESCPSILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELL YGVIDNSDFYRNDVAQANRSRMNVPFQLADNTLDKVFLEESFAAGLHALKGHRVVGGM RASIYNAMPIEGVKALTDFMIDFERRHG" misc_feature 1061478..1062563 /gene="serC" /locus_tag="STM0977" /note="3-phosphoserine/phosphohydroxythreonine transaminase; Region: PRK05355" /db_xref="CDD:235428" misc_feature order(1061493..1061495,1061508..1061513,1061517..1061519, 1061694..1061699,1061706..1061708,1061802..1061804, 1061811..1061816,1062084..1062086,1062192..1062200) /gene="serC" /locus_tag="STM0977" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99736" misc_feature order(1061502..1061504,1061703..1061708,1061781..1061783, 1061934..1061936,1061997..1061999,1062066..1062071, 1062459..1062461) /gene="serC" /locus_tag="STM0977" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:99736" misc_feature order(1061700..1061708,1061781..1061783,1061934..1061936, 1061997..1061999,1062003..1062005,1062066..1062071) /gene="serC" /locus_tag="STM0977" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99736" misc_feature 1062069..1062071 /gene="serC" /locus_tag="STM0977" /note="catalytic residue [active]" /db_xref="CDD:99736" gene 1062637..1063920 /gene="aroA" /locus_tag="STM0978" /db_xref="GeneID:1252496" CDS 1062637..1063920 /gene="aroA" /locus_tag="STM0978" /EC_number="2.5.1.19" /note="3-phosphoshikimate 1-carboxyvinyltransferase. (SW:AROA_SALTY)" /codon_start=1 /transl_table=11 /product="3-enolpyruvylshikimate-5-phosphate synthetase" /protein_id="NP_459953.1" /db_xref="GeneID:1252496" /translation="MESLTLQPIARVDGAINLPGSKSVSNRALLLAALACGKTALTNL LDSDDVRHMLNALSALGINYTLSADRTRCDITGNGGALRAPGALELFLGNAGTAMRPL AAALCLGQNEIVLTGEPRMKERPIGHLVDSLRQGGANIDYLEQENYPPLRLRGGFTGG DIEVDGSVSSQFLTALLMTAPLAPKDTIIRVKGELVSKPYIDITLNLMKTFGVEIANH HYQQFVVKGGQQYHSPGRYLVEGDASSASYFLAAGAIKGGTVKVTGIGRKSMQGDIRF ADVLEKMGATITWGDDFIACTRGELHAIDMDMNHIPDAAMTIATTALFAKGTTTLRNI YNWRVKETDRLFAMATELRKVGAEVEEGHDYIRITPPAKLQHADIGTYNDHRMAMCFS LVALSDTPVTILDPKCTAKTFPDYFEQLARMSTPA" misc_feature 1062637..>1063917 /gene="aroA" /locus_tag="STM0978" /note="bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidylate kinase; Region: PRK11860" /db_xref="CDD:237003" gene 1064050..1064824 /gene="ycaL" /locus_tag="STM0979" /db_xref="GeneID:1252497" regulatory 1064050..1064055 /regulatory_class="ribosome_binding_site" /gene="ycaL" /locus_tag="STM0979" /note="putative RBS for ycaL; RegulonDB:STMS1H001263" CDS 1064063..1064824 /gene="ycaL" /locus_tag="STM0979" /EC_number="3.4.24.-" /note="similar to E. coli putative heat shock protein (AAC73995.1); Blastp hit to AAC73995.1 (262 aa), 69% identity in aa 9 - 262" /codon_start=1 /transl_table=11 /product="putative Zn-dependent protease with chaperone function" /protein_id="NP_459954.1" /db_xref="GeneID:1252497" /translation="MKNKSLLLAVAISATLLAGCKNGVNGNLIASSGMSTYKAATLSD ADVKALSNNACKQMDSENQLAGSKSKYTKRLSKIAKALGNNIDGTPVSYKVYMTSDIN AWAMANGCVRVYSGLMDLMTDNEIEGVLGHELGHVSLGHSRKAMQTAYATLAARDAIS ATSGVAAQLSQSQLGDLAEGVINSAFSRSQESDADDFSYDLLKKRGINTQGLVTAFDK FATMDAGHAKSLMDSHPASADRAQHMRDRIAEDKK" misc_feature 1064156..1064803 /gene="ycaL" /locus_tag="STM0979" /note="Peptidase M48C Ste24p loiP-like, integral membrane protein; Region: M48C_loiP_like; cd07334" /db_xref="CDD:320693" misc_feature order(1064456..1064461,1064468..1064470,1064633..1064635, 1064645..1064647,1064762..1064764) /gene="ycaL" /locus_tag="STM0979" /note="putative active site [active]" /db_xref="CDD:320693" misc_feature order(1064456..1064458,1064468..1064470,1064633..1064635, 1064762..1064764) /gene="ycaL" /locus_tag="STM0979" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:320693" gene 1064803..1065680 /gene="cmk" /locus_tag="STM0980" /db_xref="GeneID:1252498" regulatory 1064803..1064811 /regulatory_class="minus_35_signal" /gene="ycaL" /locus_tag="STM0979" /note="putative -35_signal for cmk; RegulonDB:STMLTH004713" regulatory 1064831..1064839 /regulatory_class="minus_10_signal" /gene="cmk" /locus_tag="STM0980" /note="putative -10_signal for cmk; RegulonDB:STMLTH004713" regulatory 1064985..1064990 /regulatory_class="ribosome_binding_site" /gene="cmk" /locus_tag="STM0980" /note="putative RBS for cmk; RegulonDB:STMS1H001264" CDS 1064997..1065680 /gene="cmk" /locus_tag="STM0980" /EC_number="2.7.4.14" /note="similar to E. coli cytidylate kinase (AAC73996.1); Blastp hit to AAC73996.1 (227 aa), 97% identity in aa 1 - 227" /codon_start=1 /transl_table=11 /product="cytidine monophosphate (CMP) kinase" /protein_id="NP_459955.1" /db_xref="GeneID:1252498" /translation="MTAIAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLA LAALHHHVDLASEDALVPLASHLDVRFVSTDGNLEVILEGEDVSGEIRTQEVANAASQ VAAFPRVREALLRRQRAFREAPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRML QLQENGFSVNFERLLAEIKERDDRDRHRAVAPLVPAADALVLDSTRLSIEQVIEKALQ YARQKLALA" misc_feature 1065012..1065671 /gene="cmk" /locus_tag="STM0980" /note="Cytidylate kinase [Nucleotide transport and metabolism]; Region: Cmk; COG0283" /db_xref="CDD:440052" gene 1065699..1067467 /gene="rpsA" /locus_tag="STM0981" /db_xref="GeneID:1252499" regulatory 1065699..1065707 /regulatory_class="minus_35_signal" /gene="rpsA" /locus_tag="STM0981" /note="putative -35_signal for rpsA; RegulonDB:STMLTH004714" regulatory 1065726..1065734 /regulatory_class="minus_10_signal" /gene="rpsA" /locus_tag="STM0981" /note="putative -10_signal for rpsA; RegulonDB:STMLTH004714" regulatory 1065781..1065786 /regulatory_class="ribosome_binding_site" /gene="rpsA" /locus_tag="STM0981" /note="putative RBS for rpsA; RegulonDB:STMS1H001265" CDS 1065794..1067467 /gene="rpsA" /locus_tag="STM0981" /note="similar to E. coli 30S ribosomal subunit protein S1 (AAC73997.1); Blastp hit to AAC73997.1 (557 aa), 99% identity in aa 1 - 557" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S1" /protein_id="NP_459956.1" /db_xref="GeneID:1252499" /translation="MTESFAQLFEESLKEIETRPGSIVRGVVVAIDKDVVLVDAGLKS ESAIPAEQFKNAQGELEIQVGDEVDVALDAVEDGFGETLLSREKAKRHEAWITLEKAY EDAETVTGVINGKVKGGFTVELNGIRAFLPGSLVDVRPVRDTLHLEGKELEFKVIKLD QKRNNVVVSRRAVIESENSAERDQLLENLQEGMEVKGIVKNLTDYGAFVDLGGVDGLL HITDMAWKRVKHPSEIVNVGDEINVKVLKFDRERTRVSLGLKQLGEDPWVAIAKRYPE GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLD IDEERRRISLGLKQCKSNPWQQFAETHNKGDRVEGKIKSITDFGIFIGLDGGIDGLVH LSDISWNVAGEEAVREYKKGDEIAAVVLQVDAERERISLGVKQLAEDPFNNWVALNKK GAIVTGKVTAVDAKGATVELADGVEGYLRASEASRDRVEDATLVLSVGDDVEAKFTGV DRKNRAISLSVRAKDEADEKDAIATVNKQEDANFSNNAMAEAFKAAKGE" misc_feature 1065794..1067464 /gene="rpsA" /locus_tag="STM0981" /note="30S ribosomal protein S1; Reviewed; Region: rpsA; PRK06299" /db_xref="CDD:235775" gene 1067568..1067907 /gene="himD" /locus_tag="STM0982" /db_xref="GeneID:1252500" regulatory 1067568..1067576 /regulatory_class="minus_35_signal" /gene="himD" /locus_tag="STM0982" /note="putative -35_signal for himD; RegulonDB:STMLTH004715" regulatory 1067592..1067600 /regulatory_class="minus_10_signal" /gene="himD" /locus_tag="STM0982" /note="putative -10_signal for himD; RegulonDB:STMLTH004715" regulatory 1067615..1067620 /regulatory_class="ribosome_binding_site" /gene="himD" /locus_tag="STM0982" /note="putative RBS for himD; RegulonDB:STMS1H001266" CDS 1067623..1067907 /gene="himD" /locus_tag="STM0982" /note="site-specific recombination; similar to E. coli integration host factor (IHF), beta subunit; site-specific recombination (AAC73998.1); Blastp hit to AAC73998.1 (94 aa), 98% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="integration host factor (IHF), beta subunit" /protein_id="NP_459957.1" /db_xref="GeneID:1252500" /translation="MTKSELIERLATQQSHIPAKAVEDAVKEMLEHMASTLAQGERIE IRGFGSFSLHYRAPRTGRNPKTGDKVELEGKYVPHFKPGKELRDRANIYG" misc_feature 1067623..1067904 /gene="himD" /locus_tag="STM0982" /note="integration host factor subunit beta; Reviewed; Region: ihfB; PRK00199" /db_xref="CDD:178925" misc_feature order(1067629..1067631,1067638..1067640,1067647..1067652, 1067659..1067661,1067671..1067673,1067683..1067685, 1067692..1067700,1067704..1067733,1067743..1067760, 1067764..1067766,1067845..1067850,1067854..1067856, 1067860..1067862,1067866..1067868,1067878..1067880) /gene="himD" /locus_tag="STM0982" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:259858" misc_feature order(1067629..1067634,1067752..1067760,1067764..1067766, 1067782..1067784,1067788..1067793,1067857..1067859, 1067863..1067865,1067869..1067874) /gene="himD" /locus_tag="STM0982" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:259858" gene 1068128..1070401 /gene="ycaI" /locus_tag="STM0983" /db_xref="GeneID:1252501" regulatory 1068128..1068133 /regulatory_class="ribosome_binding_site" /gene="ycaI" /locus_tag="STM0983" /note="putative RBS for ycaI; RegulonDB:STMS1H001267" CDS 1068137..1070401 /gene="ycaI" /locus_tag="STM0983" /note="similar to E. coli orf, hypothetical protein (AAC73999.1); Blastp hit to AAC73999.1 (780 aa), 70% identity in aa 27 - 780" /codon_start=1 /transl_table=11 /product="putative recombination protein" /protein_id="NP_459958.1" /db_xref="GeneID:1252501" /translation="MKITTVSVCVVCGILPLMILPVLPDTWILAVLFCLACLLCLIPH HYARYAALTLLFFMWGIFAARQAIWAGNVLPAATQEATVVITATDHMTTHYGRITHLR GKPLFPAVGIVLHGQYLPTEVCAGQQWAMTLKVRAVHGQLNEGGFDSQRYALAQHQPL TGRFLQAKAINPECSLRGRYLASLRATLAPYPWQQVILALGMGERGAVSQEVKAVMRD TGTAHLMAISGLHIAFAALLAAGLIRGGQFFLPVRWIRWQTPLLGGILCAICYAWLTG LQPPALRTVAALSVWGGLKLSGRQWSGWQVWCCCLAAIIFADPVAVISQSLWLSAFAV AGLLFWYQWFPAPNGNFPRGLRWLLNLLHLQAGITLLLLPLQVALFHGISVTAMLANL FAVPWVTFVTVPLILAGMILHLTGPFFLEEWVWYLTDRALAALFYLLNALPQGWVNID NRWQWLTLLPWLTLIAWRLNVWRTWPAVCLCGLLLMSWPLWRPINASGWQVHMLDVGQ GLAIAIVRGDKVILYDTGRAWPEGDSGQQVIIPWLRWHNLTPEGVILSHEHLDHRGGL RSLQQVWPSMWIRSPLGWQGHLPCFRGEQWQWQGLTFQAHWPLRESADRGNNRSCVVK VDDGVHSILLTGDIEAGAEQKMLSRYWRHLAATFIQVPHHGSNTSSSLPFIQRVHGEA ALASASRYNAWRLPSRKVKQRYRQQAYQWFDTPHQGQISLRFSPQGWRIQGLRDQILP RWYHQWFGVSEDNG" misc_feature 1068137..1070395 /gene="ycaI" /locus_tag="STM0983" /note="ComEC family competence protein; Provisional; Region: PRK11539" /db_xref="CDD:236924" misc_feature order(1069805..1069807,1069811..1069822,1069985..1069987, 1070045..1070047,1070123..1070128) /gene="ycaI" /locus_tag="STM0983" /note="active site" /db_xref="CDD:293817" gene 1070426..1072186 /gene="msbA" /locus_tag="STM0984" /db_xref="GeneID:1252502" regulatory 1070426..1070431 /regulatory_class="ribosome_binding_site" /gene="msbA" /locus_tag="STM0984" /note="putative RBS for msbA; RegulonDB:STMS1H001268" CDS 1070438..1072186 /gene="msbA" /locus_tag="STM0984" /note="similar to E. coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); Blastp hit to AAC74000.1 (582 aa), 96% identity in aa 1 - 582" /codon_start=1 /transl_table=11 /product="multicopy repressor of htrB transport protein; ABC superfamily (atp&membrane)" /protein_id="NP_459959.1" /db_xref="GeneID:1252502" /translation="MHNDKDLSTWQTFRRLWPTIAPFKAGLIVAGIALILNAASDTFM LSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMILRGITSYISSYCISWVSGKVVMTMRR RLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMM FYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVL IFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM DSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRV IDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRF YDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEAT SALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL AQHGVYAQLHKMQFGQ" misc_feature 1070438..1072183 /gene="msbA" /locus_tag="STM0984" /note="lipid A ABC transporter ATP-binding protein/permease MsbA; Region: PRK11176" /db_xref="CDD:183016" gene 1072166..1073160 /gene="lpxK" /locus_tag="STM0985" /db_xref="GeneID:1252503" regulatory 1072166..1072171 /regulatory_class="ribosome_binding_site" /gene="lpxK" /locus_tag="STM0985" /note="putative RBS for lpxK; RegulonDB:STMS1H001269" CDS 1072183..1073160 /gene="lpxK" /locus_tag="STM0985" /EC_number="2.7.1.130" /note="lipid A 4'kinase; similar to E. coli putative EC 1.2 enzyme (AAC74001.1); Blastp hit to AAC74001.1 (328 aa), 82% identity in aa 1 - 324" /codon_start=1 /transl_table=11 /product="tetraacyldisaccharide 4' kinase" /protein_id="NP_459960.1" /db_xref="GeneID:1252503" /translation="MIARIWSGESPLWRLLLPLSWLYGLVSGAIRLSYKLGFKRAWRA PVPVVVVGNLTAGGNGKTPVVIWLVEKLQQRGVRVGVVSRGYGGKAAAYPLLLTPETT TAEAGDEPVLIYQRTGAPVAVAPERAAAVKAILAAHNVQIIITDDGLQHYRLARDIEI VVIDGVRRFGNGWWLPAGPMRERASRLKTVDAAIVNGGVARAGEIPMQLAPGLAVNLR TGARCDVAQLSNIVAMAGIGHPPRFFATLEACGAHPQKCVPLADHQTLAPADVQALVG EGQTLVMTEKDAVKCRAFAEDNWWFLPVDARLSGEQPDKLLQHITSLVR" misc_feature 1072183..1073148 /gene="lpxK" /locus_tag="STM0985" /note="tetraacyldisaccharide 4'-kinase; Reviewed; Region: lpxK; PRK00652" /db_xref="CDD:234808" gene 1073192..1074436 /gene="ycaQ" /locus_tag="STM0986" /db_xref="GeneID:1252504" regulatory 1073192..1073197 /regulatory_class="ribosome_binding_site" /gene="ycaQ" /locus_tag="STM0986" /note="putative RBS for ycaQ; RegulonDB:STMS1H001270" CDS 1073204..1074436 /gene="ycaQ" /locus_tag="STM0986" /note="similar to E. coli orf, hypothetical protein (AAC74002.1); Blastp hit to AAC74002.1 (410 aa), 77% identity in aa 1 - 408" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_459961.1" /db_xref="GeneID:1252504" /translation="MSLPYLSLSQARCLHLAAQGLLKKPRRNALPGDVLAAISRMALL QIDTINVVARSPYLVLFSRLGSYPQAWLDEALRRGELMEYWAHEACFLPRRDFKLIRH RMLSPEKMGWKYHAAWMHEHAEEIEQLVRHIQEHGPVRSADFEHAQKGASGWWEWKPH KRHLEGLFTAGKVMVVERRNFQRVYDLTPRVMPHWDDERDGLSQSQAENLMLDNSARS LGIFREQWLADYYRLKRPDLKGWRESRAEQQQIIPVEVETLGRMWLHADLLSQLEPAL NNALKATHSAVLSPFDPVVWDRKRATQLFGFNYRLECYTPAAKRQYGYFVLPLLYLGR LVGRMDAKMHRKTGVLEVISLYLEDDIRPGVSLQKGIWQAISAFAAWQRASRVTLGQC PPGLFSTMRHGWEIDPAP" misc_feature 1073204..1074418 /gene="ycaQ" /locus_tag="STM0986" /note="DNA glycosylase YcaQ, repair of DNA interstrand crosslinks [Replication, recombination and repair]; Region: YcaQ; COG3214" /db_xref="CDD:442447" gene 1074480..1074670 /gene="ycaR" /locus_tag="STM0987" /db_xref="GeneID:1252505" regulatory 1074480..1074485 /regulatory_class="ribosome_binding_site" /gene="ycaR" /locus_tag="STM0987" /note="putative RBS for ycaR; RegulonDB:STMS1H001271" CDS 1074488..1074670 /gene="ycaR" /locus_tag="STM0987" /note="similar to E. coli orf, hypothetical protein (AAC74003.1); Blastp hit to AAC74003.1 (60 aa), 93% identity in aa 1 - 60" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_459962.1" /db_xref="GeneID:1252505" /translation="MDHRLLEIIACPVCNGKLWYNQEQQELICKLDNLAFPLRDGIPV LLENEARALTSDESKS" misc_feature 1074488..1074667 /gene="ycaR" /locus_tag="STM0987" /note="protein YcaR; Region: PRK11827" /db_xref="CDD:183328" gene 1074651..1075413 /gene="kdsB" /locus_tag="STM0988" /db_xref="GeneID:1252506" regulatory 1074651..1074656 /regulatory_class="ribosome_binding_site" /gene="ycaR" /locus_tag="STM0987" /note="putative RBS for kdsB; RegulonDB:STMS1H001272" CDS 1074667..1075413 /gene="kdsB" /locus_tag="STM0988" /EC_number="2.7.7.38" /note="similar to E. coli CTP:CMP-3-deoxy-D-manno-octulosonate transferase (AAC74004.1); Blastp hit to AAC74004.1 (248 aa), 93% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="CTP:CMP-3-deoxy-D-manno-octulosonate transferase" /protein_id="NP_459963.1" /db_xref="GeneID:1252506" /translation="MSFVVIIPARFSSTRLPGKPLVDINGKPMIVHVLERARESGAER IIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCGFSDDTVIVNVQGDEP MIPAVIIRQVAENLAQRQVGMATLAVPIHSAEEAFNPNAVKVVLDAEGYALYFSRATI PWDRDRFAKSLETVGDTCLRHLGIYGYRAGFIRRYVSWQPSPLEHIEMLEQLRVLWYG EKIHVAVAKAVPGTGVDTADDLERVRAEMR" misc_feature 1074667..1075410 /gene="kdsB" /locus_tag="STM0988" /note="3-deoxy-manno-octulosonate cytidylyltransferase; Provisional; Region: PRK05450" /db_xref="CDD:235473" misc_feature order(1074688..1074696,1074808..1074810,1074889..1074891, 1074958..1074960,1074964..1074966) /gene="kdsB" /locus_tag="STM0988" /note="Ligand binding site [active]" /db_xref="CDD:133010" misc_feature order(1075030..1075032,1075081..1075083,1075099..1075107, 1075123..1075128,1075132..1075152,1075195..1075197, 1075270..1075275,1075282..1075290,1075309..1075320) /gene="kdsB" /locus_tag="STM0988" /note="oligomer interface [active]" /db_xref="CDD:133010" gene 1075608..1076517 /locus_tag="STM0989" /db_xref="GeneID:1252507" regulatory 1075608..1075613 /regulatory_class="ribosome_binding_site" /locus_tag="STM0989" /note="putative RBS for STM0989; RegulonDB:STMS1H001273" CDS 1075624..1076517 /locus_tag="STM0989" /note="similar to E. coli orf, hypothetical protein (AAC74005.1); Blastp hit to AAC74005.1 (297 aa), 90% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="mukF protein (killing factor KicB)" /protein_id="NP_459964.1" /db_xref="GeneID:1252507" /translation="MEQLRAELSHLLGEKLSRIECVNEKADSALWSLYDSQGIPMPLM ARSFTTPGVAQQLAWKTSMLARSGTVRMPVIYGVLTHEEHPGPDVLLLERLRGVPVEA PARTPERWEQLKDQIVEGLLAWHRQDSRGCVGAVDHTQENIWPSWYRQRVEVLWTTLN QFSNTGLTMQDRRILFRTRECLPSLFEGFNDNCVLVHGNFCLRSMLKDARSDQLLAMV GPGLMLWAPREFELFRLMDNPLAEGLLWHYLQRAPVAESFIWRRWLYVLWDEVAQLVN TGRFNRTNFDLAAKSLLPWLA" misc_feature 1075624..1076514 /locus_tag="STM0989" /note="hypothetical protein; Provisional; Region: PRK10593" /db_xref="CDD:182575" gene complement(1076497..1077288) /gene="ycbC" /locus_tag="STM0990" /db_xref="GeneID:1252508" CDS complement(1076497..1077273) /gene="ycbC" /locus_tag="STM0990" /note="similar to E. coli orf, hypothetical protein (AAC74006.1); Blastp hit to AAC74006.1 (259 aa), 89% identity in aa 1 - 256" /codon_start=1 /transl_table=11 /product="putative KicA protein" /protein_id="NP_459965.1" /db_xref="GeneID:1252508" /translation="MLFTLKKVIGGMLLPLPLMLLMIGVGLALLWFSRFQKTGKVFIS VGWLALLLLSLQPVSDHLLRPIENRYPTWQGPQKVEYIVVLGGGYTWNPQWAPSSNLI NNSLPRLAEGIRLWRANPGARLIFTGGVAKTNTVSTAEVGARVAQSLGVPRSDIITLD KPKDTEEEAAAVKQAIGDAPFLLVTSASHLPRAMIFFQHAGLNPLPAPANQLAIDSPL NPWERAIPSPVWLMHSDRAGYETLGRLWQWLKGISGKPGE" misc_feature complement(1076500..1077273) /gene="ycbC" /locus_tag="STM0990" /note="envelope biogenesis factor ElyC; Region: PRK10494" /db_xref="CDD:236702" misc_feature complement(order(1076698..1076700,1076707..1076709, 1076719..1076721,1076770..1076772,1076779..1076781)) /gene="ycbC" /locus_tag="STM0990" /note="putative active site [active]" /db_xref="CDD:99750" regulatory complement(1077283..1077288) /regulatory_class="ribosome_binding_site" /gene="ycbC" /locus_tag="STM0990" /note="putative RBS for ycbC; RegulonDB:STMS1H001274" gene 1077308..1078212 /gene="smtA" /locus_tag="STM0991" /db_xref="GeneID:1252509" regulatory 1077308..1077316 /regulatory_class="minus_35_signal" /gene="smtA" /locus_tag="STM0991" /note="putative -35_signal for smtA; RegulonDB:STMLTH004716" regulatory 1077336..1077344 /regulatory_class="minus_10_signal" /gene="smtA" /locus_tag="STM0991" /note="putative -10_signal for smtA; RegulonDB:STMLTH004716" regulatory 1077397..1077402 /regulatory_class="ribosome_binding_site" /gene="smtA" /locus_tag="STM0991" /note="putative RBS for smtA; RegulonDB:STMS1H001275" CDS 1077409..1078212 /gene="smtA" /locus_tag="STM0991" /note="similar to E. coli S-adenosylmethionine-dependent methyltransferase (AAC74007.1); Blastp hit to AAC74007.1 (261 aa), 88% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="S-adenosylmethionine-dependent methyltransferase" /protein_id="NP_459966.1" /db_xref="GeneID:1252509" /translation="MQDRNFDDIAEKFSRNIYGTTKGQLRQAILWQDLDRVLEEIGGR KLRVLDAGGGEGQTAIKMAERGHQVTLCDLSGEMIARARQAAEAKGVSKDMHFIQCPA QDVASHLESPVDLILFHAVLEWVADPVGVLETLWSVLRPGGALSLMFYNANGLLMHNM VAGNFDYVQAGMPKRKKRTLSPDYPRDPAQVYQWLEAIGWQITGKTGVRVFHDYLREK HQQRDCYETLVELETRYCRQEPYISLGRYIHVTAIKSPALAADARITYE" misc_feature 1077409..1078173 /gene="smtA" /locus_tag="STM0991" /note="tRNA uridine 5-oxyacetic acid(34) methyltransferase CmoM; Region: PRK11036" /db_xref="CDD:182918" gene 1078194..1079527 /gene="mukF" /locus_tag="STM0992" /db_xref="GeneID:1252510" regulatory 1078194..1078199 /regulatory_class="ribosome_binding_site" /gene="smtA" /locus_tag="STM0991" /note="putative RBS for mukF; RegulonDB:STMS1H001276" CDS 1078205..1079527 /gene="mukF" /locus_tag="STM0992" /note="killing factor KICB; similar to E. coli mukF protein (killing factor KICB) (AAC74008.1); Blastp hit to AAC74008.1 (440 aa), 98% identity in aa 1 - 440" /codon_start=1 /transl_table=11 /product="mukF protein" /protein_id="NP_459967.1" /db_xref="GeneID:1252510" /translation="MSEFSQTVPELVAWARKNDFSISLPVDRLSFLLAVATLNGERLD GEMSEGELVDAFRHVSDAFEQTSETIGVRANNAINDMVRQRLLNRFTSEQAEGNAIYR LTPLGIGITDYYIRQREFSTLRLSMQLSIVAGELKRAADAAAEGGDEFHWHRNVYAPL KYSVAEIFDSIDLTQRIMDEQQQQVKDDIAQLLNKDWRAAISSCELLLSETSGTLREL QDTLEAAGDKLQANLLRIQDATMTHDDLHFVDRLVFDLQSKLDRIISWGQQSIDLWIG YDRHVHKFIRTAIDMDKNRVFAQRLRQSVQTYFDDPWALTYANADRLLDMRDEEMALR DDEVTGELPPDLEYEEFNEIREQLAAIIEEQLAIYKTRQTPLDLGLVVREYLAQYPRA RHFDVARIVIDQAVRLGVAQADFTGLPAKWQPINDYGAKVQAHVIDKY" misc_feature 1078205..1079524 /gene="mukF" /locus_tag="STM0992" /note="Chromosome condensin MukBEF, kleisin-like MukF subunit [Cell cycle control, cell division, chromosome partitioning]; Region: MukF; COG3006" /db_xref="CDD:442243" gene 1079501..1080212 /gene="mukE" /locus_tag="STM0993" /db_xref="GeneID:1252511" regulatory 1079501..1079506 /regulatory_class="ribosome_binding_site" /gene="mukE" /locus_tag="STM0993" /note="putative RBS for mukE; RegulonDB:STMS1H001277" CDS 1079508..1080212 /gene="mukE" /locus_tag="STM0993" /note="similar to E. coli orf, hypothetical protein (AAC74009.1); Blastp hit to AAC74009.1 (225 aa), 99% identity in aa 1 - 225" /codon_start=1 /transl_table=11 /product="putative chromosome partitioning" /protein_id="NP_459968.1" /db_xref="GeneID:1252511" /translation="MSLTNIEQVMPVKLAQALANPLFPALDSALRSGRHIGLDELDNH AFLMDFQEYLEEFYARYNVELIRAPEGFFYLRPRSTTLIPRSVLSELDMMVGKILCYL YLSPERLANEGIFTQQELYDELLTLADEAKLLKLVNNRSTGSDVDRQKLQEKVRSSLN RLRRLGMVWFMGHDSSKFRITESVFRFGADVRAGDDPREAQRRLIRDGEAMPIENHLQ LNDETEESQPDSGEEE" misc_feature 1079508..1080209 /gene="mukE" /locus_tag="STM0993" /note="chromosome partition protein MukE; Region: PRK05256" /db_xref="CDD:235378" gene 1080201..1084678 /gene="mukB" /locus_tag="STM0994" /db_xref="GeneID:1252512" regulatory 1080201..1080206 /regulatory_class="ribosome_binding_site" /gene="mukE" /locus_tag="STM0993" /note="putative RBS for mukB; RegulonDB:STMS1H001278" CDS 1080212..1084678 /gene="mukB" /locus_tag="STM0994" /note="similar to E. coli kinesin-like cell division protein involved in chromosome partitioning (AAC74010.1); Blastp hit to AAC74010.1 (1486 aa), 94% identity in aa 1 - 1486" /codon_start=1 /transl_table=11 /product="kinesin-line cell division protein involved in sister chromosome partitioning" /protein_id="NP_459969.1" /db_xref="GeneID:1252512" /translation="MIERGKFRSLTLINWNGFFARTFDLDELVTTLSGGNGAGKSTTM AAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVV GVRLQQVAGRDRKVDIKPFAIQGLPMSVQPTQLVTETLNERQARVLSLAELKDKLDEM EGVQFKQFNSITDYHSLMFDLGIIARRLRSASDRSKFYRLIEASLYGGISSAITRSLR DYLLPENSGVRKAFQDMEAALRENRLTLEAIRVTQSDRDLFKHLISEATDYVAADYMR HANERRVHLDQALAFRRDLYTSRKQLAAEQYKHVDMARELGEHNGAEGSLEADYQAAS DHLNLVQTALRQQEKIERYEADLEELQIRLEEQNEVVAEAAEMQDENEARAEAAELEV DELKSQLADYQQALDVQQTRAIQYNQAISALARAKELCHLPDLTPESAAEWLDTFQAK EQEATEKLLSLEQKMSVAQTAHSQFEQAYQLVAAINGPLARSEAWDVARELLRDGVNQ RHLAEQVQPLRMRLSELEQRLREQQEAERLLAEFCKRQGKNFDIDELEALHQELEARI ASLSESVSSASEQRMALRQEQEQLQSRIQHLMQRAPVWLAAQNSLNQLSEQCGEEFTS SQEVTEYLQQLLEREREAIVERDEVGARKNAVDEEIERLSQPGGAEDQRLNALAERFG GVLLSEIYDDVSLEDAPYFSALYGPSRHAIVVPDLSQIAEQLEGLTDCPEDLYLIEGD PQSFDDSVFSVDELEKAVVVKIADRQWRYSRFPSLPIFGRAARENRIESLHAEREVLS ERFATLSFDVQKTQRLHQAFSRFIGSHLSVAFEDDPEAEIRRLNGRRVELERALATHE SDNQQQRLQFEQAKEGVSALNRLLPRLNLLADETLADRVDEIQERLDEAQEAARFVQQ YGNQLAKLEPVVSVLQSDPEQFEQLKEDYAWSQQMQRDARQQAFALAEVVERRAHFSY SDSAEMLSGNSDLNEKLRQRLEQAEAERTRAREALRSHAAQLSQYSQVLASLKSSYDT KKELLNDLQRELQDIGVRADSGAEERARQRRDELHAQLSNNRSRRNQLEKALTFCEAE MENLTRKLRKLERDYHEMREQVVTAKAGWCAVMRMVKDNGVERRLHRRELAYLSADEL RSMSDKALGALRLAVADNEHLRDVLRLSEDPKRPERKIQFFVAVYQHLRERIRQDIIR TDDPVEAIEQMEIELSRLTEELTSREQKLAISSRSVANIIRKTIQREQNRIRMLNQGL QSVSFGQVNSVRLNVNVRETHATLLDVLSEQQEQHQDLFNSNRLTFSEALAKLYQRLN PQIDMGQRTPQTIGEELLDYRNYLEMEVEVNRGSDGWLRAESGALSTGEAIGTGMSIL VMVVQSWEDEARRLRGKDISPCRLLFLDEAARLDARSIATLFELCERLQMQLIIAAPE NISPEKGTTYKLVRKVFQNTEHVHVVGLRGFAPQLPETLPGTQTEDTPSEAS" misc_feature 1080215..1084621 /gene="mukB" /locus_tag="STM0994" /note="Chromosome condensin MukBEF, ATPase and DNA-binding subunit MukB [Cell cycle control, cell division, chromosome partitioning]; Region: MukB; COG3096" /db_xref="CDD:442330" gene 1085010..1086864 /gene="ycbB" /locus_tag="STM0995" /db_xref="GeneID:1252513" regulatory 1085010..1085015 /regulatory_class="ribosome_binding_site" /gene="ycbB" /locus_tag="STM0995" /note="putative RBS for ycbB; RegulonDB:STMS1H001279" CDS 1085023..1086864 /gene="ycbB" /locus_tag="STM0995" /note="similar to E. coli putative amidase (AAC74011.1); Blastp hit to AAC74011.1 (615 aa), 84% identity in aa 1 - 615" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_459970.1" /db_xref="GeneID:1252513" /translation="MLLNKMCGRCLSAISLCLAVTFAPLFNAQADEPEMIPGDSAVAA TDLAGPQKQSAATAIMAGIQPLPEGVSAEKVRADLQSQLPSGYTPVYMSQLTLLYAAR DMKPMWDNRDAVKAFQQQLAEVAIAGFQPQFTAWVALLTDPAVNGMARDVVLSDAMMG YLHFIANIPVKGQRWLYSNKPYALATPPVSVINQWQIALEEGQLPMFVASLAPQHPQY APMHDALLKLVADSRPWPQLTNTATLRPGQWSNDVPALREILQRTGMLDGGPKIALPG DNTADSAVVSPSAVVDETSVAHDEPTARRSKPAPAARAYDRELVEAVKRFQAWQGLGA DGVIGPATRNWLNMTPAQRAGVLALNIQRLRLLPAELSTGIMVNIPAYSLVYYQNGNQ VLASRVIVGRPDRKTPMMSSALNNVVVNPPWNVPPTLARKDILPKVWNDPGYLERHGY TVMRGWNSKEAIDPWQVDWATITPSNLPFRFQQAPGAHNSLGRYKFNMPSSDAIYLHD TPNHTLFQRDARALSSGCVRVNKASELANMLLQDAGWNDARISGALKQGDTRYVNIRQ NIPVNLYYLTAFVGADGRMQYRTDIYNYDLTARSSAQIVPKVEQLIR" misc_feature 1085023..1086861 /gene="ycbB" /locus_tag="STM0995" /note="murein L,D-transpeptidase; Provisional; Region: PRK10594" /db_xref="CDD:236723" gene 1087124..1087672 /gene="ycbK" /locus_tag="STM0996" /db_xref="GeneID:1252514" CDS 1087124..1087672 /gene="ycbK" /locus_tag="STM0996" /note="similar to E. coli orf, hypothetical protein (AAC74012.1); Blastp hit to AAC74012.1 (182 aa), 95% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_459971.1" /db_xref="GeneID:1252514" /translation="MDKFDANRRKLLALGGVALGAAILPAPAFATLSTPRPRILTLNN LHTGESIKAEFFDGRAYIQDELAKLNHFFRDYRANKVRSIDPRLFDQLYRLQGLLGTR KPVQLISGYRSLDTNNELRARSSGVAKKSYHTKGQAMDFHIEGVALSNIRKAALSMRA GGVGYYPRSNFVHIDTGPARHW" misc_feature 1087220..1087669 /gene="ycbK" /locus_tag="STM0996" /note="Peptidase M15; Region: Peptidase_M15_3; cl42048" /db_xref="CDD:455393" gene 1087690..1088347 /gene="ycbL" /locus_tag="STM0997" /db_xref="GeneID:1252515" regulatory 1087690..1087695 /regulatory_class="ribosome_binding_site" /gene="ycbL" /locus_tag="STM0997" /note="putative RBS for ycbL; RegulonDB:STMS1H001280" CDS 1087700..1088347 /gene="ycbL" /locus_tag="STM0997" /note="similar to E. coli orf, hypothetical protein (AAC74013.1); Blastp hit to AAC74013.1 (215 aa), 91% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="putative metallo-beta-lactamase" /protein_id="NP_459972.1" /db_xref="GeneID:1252515" /translation="MNYRIIPVTAFSQNCSLIWCEQTRLAALVDPGGDAEKIKQEVDA SGVTLMQILLTHGHLDHVGAASELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDEC QPLTPDRWLNDGDRVSVGNVTLQVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGR SDFPRGDHTQLIDAIKRKLLPLGDDVTFIPGHGPLSTLGYERLHNPFLQDEMPVW" misc_feature 1087706..1088275 /gene="ycbL" /locus_tag="STM0997" /note="Salmonella enterica serovar typhimurium YcbL and related proteins; MBL-fold metallo hydrolase domain; Region: YcbL-like_MBL-fold; cd07737" /db_xref="CDD:293823" misc_feature order(1087865..1087867,1087871..1087873,1087877..1087882, 1088093..1088098,1088150..1088152,1088273..1088275) /gene="ycbL" /locus_tag="STM0997" /note="putative active site [active]" /db_xref="CDD:293823" gene complement(1088409..1089612) /gene="aspC" /locus_tag="STM0998" /db_xref="GeneID:1252516" CDS complement(1088409..1089599) /gene="aspC" /locus_tag="STM0998" /EC_number="2.6.1.1" /note="similar to E. coli aspartate aminotransferase (AAC74014.1); Blastp hit to AAC74014.1 (396 aa), 95% identity in aa 1 - 396" /codon_start=1 /transl_table=11 /product="aspartate aminotransferase" /protein_id="NP_459973.1" /db_xref="GeneID:1252516" /translation="MFENITAAPADPILGLADLFRADDRPGKINLGIGVYKDETGKTP VLTSVKKAEQYLLENETTKNYLGIDGIPEFARCTQELLFGKGSALINDKRARTAQTPG GTGALRIAADFLAKNTPVKRVWVSNPSWPNHKSVFNAAGLEVREYAYYDAENHTLDFE ALQASLSEAQAGDVVLFHGCCHNPTGIDPTLEQWQVLAELSVEKGWLPLFDFAYQGFA RGLEEDAEGLRAFAALHKELIVASSYSKNFGLYNERVGACTLVAADAETVDRAFSQMK SAIRANYSNPPAHGASIVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGA NRDFSFIIKQNGMFSFSGLTKDQVLRLREEFGVYAVASGRVNVAGMTPDNMAPLCEAI VAVL" misc_feature complement(1088412..1089599) /gene="aspC" /locus_tag="STM0998" /note="aromatic amino acid transaminase; Region: PRK09257" /db_xref="CDD:181731" misc_feature complement(order(1088838..1088840,1088862..1088867, 1088871..1088873,1088958..1088960,1089051..1089053, 1089210..1089212,1089288..1089296)) /gene="aspC" /locus_tag="STM0998" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature complement(order(1088721..1088723,1088730..1088732, 1088838..1088846,1088979..1088981,1089180..1089182, 1089285..1089287)) /gene="aspC" /locus_tag="STM0998" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature complement(1088862..1088864) /gene="aspC" /locus_tag="STM0998" /note="catalytic residue [active]" /db_xref="CDD:99734" regulatory complement(1089607..1089612) /regulatory_class="ribosome_binding_site" /gene="aspC" /locus_tag="STM0998" /note="putative RBS for aspC; RegulonDB:STMS1H001281" gene complement(1089784..1090975) /gene="ompF" /locus_tag="STM0999" /db_xref="GeneID:1252517" CDS complement(1089784..1090875) /gene="ompF" /locus_tag="STM0999" /note="outer membrane protein F precursor (PORIN OMPF) (outer membraneprotein 1A, iA, or B). (SW:OMPF_SALTY)" /codon_start=1 /transl_table=11 /product="outer membrane protein 1a (ia;b;f), porin" /protein_id="NP_459974.1" /db_xref="GeneID:1252517" /translation="MMKRKILAAVIPALLAAATANAAEIYNKDGNKLDLYGKAVGRHV WTTTGDSKNADQTYAQIGFKGETQINTDLTGFGQWEYRTKADRAEGEQQNSNLVRLAF AGLKYAEVGSIDYGRNYGIVYDVESYTDMAPYFSGETWGGAYTDNYMTSRAGGLLTYR NSDFFGLVDGLSFGIQYQGKNQDNHSINSQNGDGVGYTMAYEFDGFGVTAAYSNSKRT NDQQDRDGNGDRAESWAVGAKYDANNVYLAAVYAETRNMSIVENTVTDTVEMANKTQN LEVVAQYQFDFGLRPAISYVQSKGKQLNGAGGSADLAKYIQAGATYYFNKNMNVWVDY RFNLLDENDYSSSYVGTDDQAAVGITYQF" misc_feature complement(1089787..1090794) /gene="ompF" /locus_tag="STM0999" /note="Gram-negative porin; Region: Porin_1; pfam00267" /db_xref="CDD:395205" misc_feature complement(order(1089787..1089789,1089793..1089795, 1089799..1089801,1089892..1089894,1089901..1089906, 1090411..1090416,1090420..1090422,1090525..1090533, 1090561..1090575,1090579..1090584,1090618..1090629, 1090633..1090635,1090639..1090647,1090651..1090653, 1090669..1090683,1090747..1090755,1090759..1090761, 1090777..1090779,1090783..1090785)) /gene="ompF" /locus_tag="STM0999" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238208" misc_feature complement(order(1090420..1090422,1090486..1090488, 1090579..1090581,1090696..1090698,1090762..1090764)) /gene="ompF" /locus_tag="STM0999" /note="eyelet of channel [active]" /db_xref="CDD:238208" regulatory complement(1090884..1090889) /regulatory_class="ribosome_binding_site" /gene="ompF" /locus_tag="STM0999" /note="putative RBS for ompF; RegulonDB:STMS1H001282" regulatory complement(1090951..1090959) /regulatory_class="minus_10_signal" /gene="ompF" /locus_tag="STM0999" /note="putative -10_signal for ompF; RegulonDB:STMLTH004717" regulatory complement(1090967..1090975) /regulatory_class="minus_35_signal" /gene="ompF" /locus_tag="STM0999" /note="putative -35_signal for ompF; RegulonDB:STMLTH004717" protein_bind complement(1091027..1091037) /note="putative binding site for OmpR, RegulonDB: STMS1H000334" /bound_moiety="OmpR" protein_bind complement(1091028..1091062) /note="putative binding site for IHF, RegulonDB: STMS1H000229" /bound_moiety="IHF" protein_bind complement(1091065..1091077) /note="putative binding site for Lrp, RegulonDB: STMS1H000265" /bound_moiety="Lrp" protein_bind complement(1091067..1091077) /note="putative binding site for OmpR, RegulonDB: STMS1H000322" /bound_moiety="OmpR" protein_bind complement(1091073..1091083) /note="putative binding site for OmpR, RegulonDB: STMS1H000323" /bound_moiety="OmpR" protein_bind complement(1091087..1091102) /note="putative binding site for IHF, RegulonDB: STMS1H000218" /bound_moiety="IHF" protein_bind complement(1091135..1091185) /note="putative binding site for IHF, RegulonDB: STMS1H000220" /bound_moiety="IHF" protein_bind complement(1091277..1091289) /note="putative binding site for OmpR, RegulonDB: STMS1H000326" /bound_moiety="OmpR" gene complement(1091482..1092891) /gene="asnS" /locus_tag="STM1000" /db_xref="GeneID:1252518" CDS complement(1091482..1092882) /gene="asnS" /locus_tag="STM1000" /EC_number="6.1.1.22" /note="similar to E. coli asparagine tRNA synthetase (AAC74016.1); Blastp hit to AAC74016.1 (466 aa), 94% identity in aa 1 - 466" /codon_start=1 /transl_table=11 /product="asparagine tRNA synthetase" /protein_id="NP_459975.1" /db_xref="GeneID:1252518" /translation="MSVVPVADVLQGRVAVDQEVTVRGWVRTRRDSKAGISFLAVYDG SCFDPVQAVINNSLPNYNEEVLHLTTGCSVVVTGKVVASPGQGQSFEIQATKVEVAGW VEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFDEQGFFWV STPLITASDTEGAGEMFRVSTLDLENLPRNDQGRVDFDKDFFGKESFLTVSGQLNGET YACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFADLEDNARLAEAMLKYVFNA VLEERADDMKFFAERVDKDAIARLERFVSTDFAQVDYTDAVAILERCGKTFENPVFWG VDLSSEHERYLAEEHFKAPVVVKNYPKEIKAFYMRLNEDGKTVAAMDVLAPGIGEIIG GSQREERLDVLDARMAEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQN VRDVIPFPRTPRNASF" misc_feature complement(1091485..1092882) /gene="asnS" /locus_tag="STM1000" /note="asparaginyl-tRNA synthetase; Validated; Region: asnC; PRK03932" /db_xref="CDD:235176" regulatory complement(1092886..1092891) /regulatory_class="ribosome_binding_site" /gene="asnS" /locus_tag="STM1000" /note="putative RBS for asnS; RegulonDB:STMS1H001283" gene complement(1093083..1093550) /locus_tag="STM1001" /db_xref="GeneID:1252519" CDS complement(1093083..1093544) /locus_tag="STM1001" /note="similar to E. coli regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system (AAC73975.1); Blastp hit to AAC73975.1 (164 aa), 31% identity in aa 12 - 162" /codon_start=1 /transl_table=11 /product="putative leucine response regulator" /protein_id="NP_459976.1" /db_xref="GeneID:1252519" /translation="MKLDAWDKNILTLLQRDNRLSQREIAEQVNLSPSAVNRRIAALE EAGIIKGNVSLIDAGKVGRPVTIVVQVVIENERFNLLEEARQRFVSCPQVQQVYYVTG DFDFLLVLNVRDMAEYEALTRELFFSSGNIKSFKTIVVMQNAKQEMRVLIE" misc_feature complement(1093122..1093544) /locus_tag="STM1001" /note="DNA-binding transcriptional regulator, Lrp family [Transcription]; Region: Lrp; COG1522" /db_xref="CDD:441131" regulatory complement(1093545..1093550) /regulatory_class="ribosome_binding_site" /locus_tag="STM1001" /note="putative RBS for STM1001; RegulonDB:STMS1H001284" gene 1093850..1095075 /locus_tag="STM1002" /db_xref="GeneID:1252520" regulatory 1093850..1093855 /regulatory_class="ribosome_binding_site" /locus_tag="STM1002" /note="putative RBS for STM1002; RegulonDB:STMS1H001285" CDS 1093861..1095075 /locus_tag="STM1002" /EC_number="4.3.1.-" /EC_number="6.1.1.22" /note="similar to E. coli putative dehydratase (AAC75909.1); Blastp hit to AAC75909.1 (398 aa), 50% identity in aa 14 - 395" /codon_start=1 /transl_table=11 /product="putatiave diaminopropionate ammonia lyase" /protein_id="NP_459977.1" /db_xref="GeneID:1252520" /translation="MHELIKYQFNTRRKKYGTGAALSLLNGNVGHEVLAFHKKLPNYA VTPLHNLAHLSQRLGLGSIHIKDESWRFGLNAFKGLGGSYAVGKYLADKLQCDINSLS FAALNTPEIKEKIKDCVFVTATDGNHGRGVAWAAEQLGLKAVVYMPKGSSLIRAENIR HHGAECTITDLNYDDAVRLAHRMAQTKGWVLLQDTAWTGYEEIPTWIMQGYMTLAVEA YEQLAETNSPLPTHLILQAGVGSFAGSVMGYFVEKMQENIPNIIVVEPHQANCLYQSA VMDDGQPHCVTGDMATIMAGLACGEPNIISWPIIRDNTSCFISADDCLAAKGMRISAA PRPGTDTPFISGESGAIGVGLLYELMNNMHYQDLANRLQLDASAHVLLISTEGDTSPD IYEDIVWNGRSA" misc_feature 1093873..1095063 /locus_tag="STM1002" /note="diaminopropionate ammonia-lyase; Region: 2_3_DAP_am_ly; TIGR03528" /db_xref="CDD:274631" misc_feature 1094092..1094094 /locus_tag="STM1002" /note="catalytic residue [active]" /db_xref="CDD:107202" gene 1095314..1096756 /locus_tag="STM1003" /db_xref="GeneID:1252521" regulatory 1095314..1095319 /regulatory_class="ribosome_binding_site" /locus_tag="STM1003" /note="putative RBS for STM1003; RegulonDB:STMS1H001286" CDS 1095320..1096756 /locus_tag="STM1003" /note="similar to E. coli inner membrane transport protein (AAC73118.1); Blastp hit to AAC73118.1 (476 aa), 30% identity in aa 12 - 430" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, Lrp family" /protein_id="NP_459978.1" /db_xref="GeneID:1252521" /translation="MLEQLSQLFEFLWGGPLFLCVIGIGFYFTVRLNFFQIINLKDIY RNTIGTLAGKNKQNTTGEVASKKSLKSIEVAATVLSGSLGAGTIAGVAAAIAVGGPGA IFWMWIIAVVGMMTKMVEVTLAVKYRSKGENGEYYGGPMHYIKKGLNKKWHPLAGLYA FALMILVITDACFVQTNTMAAVIHYTFDIPTSVIGGFIVIVGALVILKGLSSLGKFCT IALPPITIAYFIGAAGVVVLNIEAIPQVIKSIFYYAFAPAPAAGGFVGSTIMMAISKG ASRGIFTNEAGMGTSATVHATANVDYAFRQGMWGAVEVFFVSMITCNFTAFAVLASGM WTDASYQGIQIIFAALKETWHPIIVQVLCLGVALILFTSYLGSYIKFRTSINYIFGDK LERIIKWLYFLPPLIAVNMEIPVIWLMADIAVGFLVIPNVIALFLLRKEFISEFNLFR TRTQRDTNSEKTTQITHVNMSKSEGKEE" misc_feature 1095320..1096675 /locus_tag="STM1003" /note="Na+/alanine symporter [Amino acid transport and metabolism]; Region: AlsT; COG1115" /db_xref="CDD:440732" gene complement(1096834..1098221) /gene="pncB" /locus_tag="STM1004" /db_xref="GeneID:1252522" CDS complement(1096834..1098036) /gene="pncB" /locus_tag="STM1004" /EC_number="6.3.4.21" /note="nicotinate phosphoribosyltransferase. (SW:PNCB_SALTY)" /codon_start=1 /transl_table=11 /product="nicotinate phosphoribosyltransferase" /protein_id="NP_459979.1" /db_xref="GeneID:1252522" /translation="MTQFASPVLHSLLDTDAYKLHMQQAVFHHYYDVQVAAEFRCRGD DLLGIYADAIREQVDAMQHLRLLEDEFQWLSGLPFFKPDYLNWLREFRYNPAQVCVTN DNGKLNIRLTGPWREVIMWEVPLLAVISELVHHYRSPNAGVDQALDALESKLVDFTAL TANLDMSRFHLMDFGTRRRFSREVQQAIVKRLQQESWFVGTSNYDLARRLALTPMGTQ AHEWFQAHQQISPDLATSQRAALAAWLNEYPDQLGIALTDCITMDAFLRDFGIEFASR YQGLRHDSGDPVAWGEKAIAHYEKLGIDPLTKTLVFSDNLDLPKAVELYRHFASRVQL SFGIGTRLTCDIPQVKPLNIVIKLVECNGKPVAKLSDSPGKTICHDKAFVRALRKAFD LPQVRKAS" misc_feature complement(1096837..1098036) /gene="pncB" /locus_tag="STM1004" /note="nicotinate phosphoribosyltransferase; Provisional; Region: PRK05321" /db_xref="CDD:235406" misc_feature complement(order(1097008..1097010,1097017..1097022, 1097026..1097028,1097095..1097100,1097188..1097190, 1097431..1097436,1097503..1097511)) /gene="pncB" /locus_tag="STM1004" /note="active site" /db_xref="CDD:238695" regulatory complement(1098051..1098056) /regulatory_class="ribosome_binding_site" /gene="pncB" /locus_tag="STM1004" /note="putative RBS for pncB; RegulonDB:STMS1H001287" regulatory complement(1098194..1098202) /regulatory_class="minus_10_signal" /gene="pncB" /locus_tag="STM1004" /note="putative -10_signal for pncB; RegulonDB:STMLTH004462" regulatory complement(1098213..1098221) /regulatory_class="minus_35_signal" /gene="pncB" /locus_tag="STM1004" /note="putative -35_signal for pncB; RegulonDB:STMLTH004462" gene complement(1098231..1099531) /locus_tag="STM1005" /db_xref="GeneID:1252523" CDS complement(1098231..1099523) /locus_tag="STM1005" /note="similar to E. coli putative transposase (AAC74651.1); Blastp hit to AAC74651.1 (398 aa), 54% identity in aa 2 - 393" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage integrase" /protein_id="NP_459980.1" /db_xref="GeneID:1252523" /translation="MANASYPTGVENHGGSLRIWFLYKGKRVRENLGIPDTAKNRKIA GELRSSVCFAIRMGNFNYVEKFPNSPNLARFGQDRKEITVLELTERWSELKRMEISSN TMSRYESIIKNMLPLIGENKMVSAVTTEDLLYVRKELLTGFQVMKKDHRTQVKGRKSS TVNNYMMLMAEIFQFGTDNGYAKENPFSGINRLKKAKGEPDPLTTDEFIRFIQACGHQ QMRNLWSLAVYTGMRHGELCGLAWEDIDLHAGTIIVKRNLTQTDEFTLPKTDAGTDRV IYLIQPAIDALRNQAQLTRLGRQFEVEVKLREYGQSVIQPCTFVFSPQCVKRGPRTGY HYAVNSINKIWAPIIKRAGIRYRNAYQSRHTYACWSLSAGANPNFIATQMGHTDAQMV YKVYGKWMSEKSAEQVSLLNQALFRYAPSLPQSMVAAQ" misc_feature complement(1098327..1099484) /locus_tag="STM1005" /note="Integrase/recombinase, includes phage integrase [Replication, recombination and repair, Mobilome: prophages, transposons]; Region: FimB; COG0582" /db_xref="CDD:440347" regulatory complement(1099526..1099531) /regulatory_class="ribosome_binding_site" /locus_tag="STM1005" /note="putative RBS for STM1005; RegulonDB:STMS1H001288" gene complement(1099568..1099823) /locus_tag="STM1006" /db_xref="GeneID:1252524" CDS complement(1099568..1099816) /locus_tag="STM1006" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage excisionase" /protein_id="NP_459981.1" /db_xref="GeneID:1252524" /translation="MSNIIQLTPNKWVSEKVLIAVTGLKPGTITRARKESWMLGREYL HISPDGNPKPSSECIYNREAVDQWIEAQKKNQPGAKTT" misc_feature complement(1099598..1099807) /locus_tag="STM1006" /note="Putative excisionase (DUF1233); Region: DUF1233; pfam06806" /db_xref="CDD:399649" regulatory complement(1099818..1099823) /regulatory_class="ribosome_binding_site" /locus_tag="STM1006" /note="putative RBS for STM1006; RegulonDB:STMS1H001289" gene complement(1099857..1100104) /locus_tag="STM1007" /db_xref="GeneID:1252525" CDS complement(1099857..1100096) /locus_tag="STM1007" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459982.1" /db_xref="GeneID:1252525" /translation="MRLINRSKQSPLGRRACDVALAAHHEKFGDYGRQKHVTNYTVVV DGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN" misc_feature complement(1099869..1100090) /locus_tag="STM1007" /note="Protein of unknown function (DUF4060); Region: DUF4060; pfam13269" /db_xref="CDD:433072" regulatory complement(1100099..1100104) /regulatory_class="ribosome_binding_site" /locus_tag="STM1007" /note="putative RBS for STM1007; RegulonDB:STMS1H001290" gene complement(1100139..1101300) /locus_tag="STM1008" /db_xref="GeneID:1252526" CDS complement(1100139..1101296) /locus_tag="STM1008" /note="hypothetical protein AAC26069.1 (gi|7467267)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459983.3" /db_xref="GeneID:1252526" /translation="MCAALKRCAYRHKGKIMENTNIVTTEQQAPNTISASNAIFNVQA LGQLTAFANLMADSQVTVPAHLAGKPADCMAIVMQAMQWGMNPYAVAQKTHLVNGVLG YEAQLVNAVIASSSAIHGRFHYRYGGDWERCTRTQEITRDKNGKNGKYTVTERVRGWT DEDEIGLFVQVGAILRGESEITWGEPLYLSGVVTRNSPLWVSNPKQQIAYLGVKYWAR LYCPEVILGVYSPDEVEQREEREINPAPVQRMSVQEITSEVSTRTSAQESAANVDAVA DDLRERIDTASSVDQAKAIRADIESQKALLGTALFTELKNKAVKRYYQVDAQNKVEAV INSIPNPGEPEAAEMFAKAESTLGAAKRHLGDELHDKYRVTLDDMKPEYIG" misc_feature complement(1100574..1101143) /locus_tag="STM1008" /note="RecT family; Region: RecT; pfam03837" /db_xref="CDD:397770" gene complement(1101259..1104151) /locus_tag="STM1009" /db_xref="GeneID:1252527" CDS complement(1101259..1104144) /locus_tag="STM1009" /note="exodeoxyribonuclease VIII homolog (gi|7467238)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage exodeoxyribonuclease" /protein_id="NP_459984.1" /db_xref="GeneID:1252527" /translation="MSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKS GAKLKDYFKAVATNFPVVNELPPEGELSLTFCDYYQLAKDNMTWTQIPGVTLPSSEAA AAARQHIVDGVDTETGEVLEDHTENFGNESNSPAQATAPAPELTVVATMPLRHRVLAQ YIGEGEYLYHVDASQKKEILRLEMDTDNSYVQNLLLAAENVEAFKKAIEHDIHKIVNA VKKVFPVDGKTPELATVIQFLKTWFETEHIDRGLLVKEWAKGNRVSAIQRTESGANAG GGNKTDRNPDYEHTLDTLDVEIAMATLPMDFNIYELPGSVYRRAKEIVKKKESPFKEW SAALRATPGILDYSRAAIFALIRSAHPEFYHYPGRLQGYINANLTETDHENPTEEALT AARHTPEKDAVEEANRQLAAARGEYVEGISDPNDPKWVKTGTSQPTTEPELVKNVGNG IFDVSALMQNSSTHGTETNPETTSNVQVQKADSDEKQAGDAVQAGEDDLGTGKEAVTV ENQNQAEAQQNVPESQQEEPEAAWPEYFEPGRYEGVPNEVYHAANGISSTQVKDARVS LMYFNARHVEKTIVKERSPVLDMGNLVHVLALQPENLEAEFSVEPEIPEGAFTTTATL REFIDAHNASLPALLSADDIKALLEEYNATLPSQMPLGASVDETYASYEQLPEEFQRI ENGTKHTATAMKACIKEYNVTLPAPVKTSGSRDALLEQLAIINPDLVAQEAQKSSPLK VSGTKADLIQAVKSVNPAVVFADELLDAWRENTEGKVLVTRQQLSTALNIQKALLEHP TAGKLLTHPSRAVEVSYFGIDEETGLEVRVRPDLELDMGGLRIGADLKTISMWNIKQE GLRAKLHREIIDRDYHLSAAMYCETAALDQFFWIFVNKDENYHWVAIIEASTELLELG MLEYRKTMREIANGFDTGEWSAPITEDYTDELNDFDVRRLEALRVQA" misc_feature complement(1101262..1104129) /locus_tag="STM1009" /note="exodeoxyribonuclease VIII; Region: PRK09709" /db_xref="CDD:236615" regulatory complement(1101295..1101300) /regulatory_class="ribosome_binding_site" /locus_tag="STM1008" /note="putative RBS for STM1008; RegulonDB:STMS1H001291" regulatory complement(1104146..1104151) /regulatory_class="ribosome_binding_site" /locus_tag="STM1009" /note="putative RBS for STM1009; RegulonDB:STMS1H001292" gene complement(1104271..1104570) /locus_tag="STM1010" /db_xref="GeneID:1252528" CDS complement(1104271..1104570) /locus_tag="STM1010" /note="hypothetical protein 4 (gi|7467264)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459985.1" /db_xref="GeneID:1252528" /translation="MKNSPLIWRGFIHPEFKTGEIMEIVKIEMNLKAVNKSIALFNCE NLDGGYVLGKFDSPHCAVKAISLLTVKVSDGEQAGFGNYRSYKLDYSEKFYQTIH" gene complement(1104743..1105009) /locus_tag="STM1011" /db_xref="GeneID:1252529" CDS complement(1104743..1105003) /locus_tag="STM1011" /note="hypothetical protein 2 (gi|7467263)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459986.1" /db_xref="GeneID:1252529" /translation="MLQDRTFSCTFCFTNRTFGFIVSFIDNKRIVVRCKTFRWPAIRQ TRVRMIDFARRPARQQAVPLNRIEVLIRRLCYLLAQKGDPDA" regulatory complement(1105004..1105009) /regulatory_class="ribosome_binding_site" /locus_tag="STM1011" /note="putative RBS for STM1011; RegulonDB:STMS1H001293" gene complement(1105053..1105468) /locus_tag="STM1012" /db_xref="GeneID:1252530" CDS complement(1105053..1105463) /locus_tag="STM1012" /note="probable regulatory protein (gi|7467281)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative regulatory protein" /protein_id="NP_459987.1" /db_xref="GeneID:1252530" /translation="MNKNLHPIFAKRIQQVLDENGWSMADLSRRVMLSHTSVRKWASG TSVASGERLKRLSAVTGRPEYWFFMEPGDESEGERAEPKPRVLDEKEETLLSLFNQLP EAEKLRVILHTKAVLQEMDLLKNNVFDLINDLKK" misc_feature complement(1105104..1105439) /locus_tag="STM1012" /note="transcriptional repressor DicA; Reviewed; Region: PRK09706" /db_xref="CDD:182039" regulatory complement(1105463..1105468) /regulatory_class="ribosome_binding_site" /locus_tag="STM1012" /note="putative RBS for STM1012; RegulonDB:STMS1H001294" gene 1105788..1106162 /locus_tag="STM1013" /db_xref="GeneID:1252531" CDS 1105788..1106162 /locus_tag="STM1013" /note="probable regulatory protein (gi|7467282)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative regulatory protein" /protein_id="NP_459988.1" /db_xref="GeneID:1252531" /translation="MAYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNR LASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTA VEILADAGLKAERARPDALGWD" misc_feature 1105896..>1105997 /locus_tag="STM1013" /note="Bacteriophage CII protein; Region: Phage_CII; pfam05269" /db_xref="CDD:398780" gene 1106241..1107230 /locus_tag="STM1014" /db_xref="GeneID:1252532" regulatory 1106241..1106246 /regulatory_class="ribosome_binding_site" /locus_tag="STM1014" /note="putative RBS for STM1014; RegulonDB:STMS1H001295" CDS 1106247..1107230 /locus_tag="STM1014" /note="probable replication protein (gi|7467283)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative regulatory protein" /protein_id="NP_459989.1" /db_xref="GeneID:1252532" /translation="MSMSNTAEIYKFPAPIPTQQECRMADLENGYLRLANQIQDALCI VELSGREFRVLNAIIRLTYGWSKKSDRIANSLIADKTTLKVKHVSEAVLSLAYRNIII LRRIGQTRYIGINTNLDKWAYSKPHCSKCPVSFPDDEIATWIISVPETRDSYPRKGGR ASPKTGIVIPENRDSVLPHSAIPENGDSYPRKEGRASPKTGNTKDIIPKTNIKDLTPF NPPKGKVKFDPLSIPVPEWLNAASWNEWVTYRQQSGKPIKTELTVTKAFRLLKECLDE GHDPVNVINTSIANGYQGLFKPKFALNDRRAGRDVNHISAPDKTIPTGFRG" misc_feature 1106322..1106609 /locus_tag="STM1014" /note="Bacteriophage replication protein O; Region: Phage_rep_O; pfam04492" /db_xref="CDD:461329" misc_feature <1107171..1107227 /locus_tag="STM1014" /note="DnaT DNA-binding domain; Region: DnaT; cl46275" /db_xref="CDD:480615" gene 1107221..1107982 /locus_tag="STM1015" /db_xref="GeneID:1252533" regulatory 1107221..1107226 /regulatory_class="ribosome_binding_site" /locus_tag="STM1015" /note="putative RBS for STM1015; RegulonDB:STMS1H001296" CDS 1107233..1107982 /locus_tag="STM1015" /note="dnaC protein homolog (gi|7443681)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage ATPase involved in DNA replication initiation" /protein_id="NP_459990.1" /db_xref="GeneID:1252533" /translation="MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRS EELDRMNQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGF ASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYDGGQSEASLLD DLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGAR VIDRLQMDGGMWVNFDWESYRKNVSHLRIVK" misc_feature 1107233..1107979 /locus_tag="STM1015" /note="putative replication protein; Provisional; Region: PRK12377" /db_xref="CDD:183482" misc_feature 1107557..1107580 /locus_tag="STM1015" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature order(1107560..1107583,1107743..1107745,1107845..1107847) /locus_tag="STM1015" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature 1107731..1107748 /locus_tag="STM1015" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature 1107896..1107898 /locus_tag="STM1015" /note="arginine finger; other site" /db_xref="CDD:99707" gene 1107987..1108340 /locus_tag="STM1016" /db_xref="GeneID:1252534" regulatory 1107987..1107992 /regulatory_class="ribosome_binding_site" /locus_tag="STM1016" /note="putative RBS for STM1016; RegulonDB:STMS1H001297" CDS 1107993..1108340 /locus_tag="STM1016" /note="hypothetical protein (gi|7467246)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459991.1" /db_xref="GeneID:1252534" /translation="MARPKTQSERMIILERIIGLVKEQGRITTNDVVAIFGVHRTTAE KYLRIALERGGFIRHGRCGIFRDQRAVIDYDLRRYSSSQVTGFSALPVLEKSPVMQVY GASKMSINKGGAQ" misc_feature 1107993..1108337 /locus_tag="STM1016" /note="Bacterial protein of unknown function (DUF977); Region: DUF977; pfam06163" /db_xref="CDD:310626" gene 1108331..1108648 /locus_tag="STM1017" /db_xref="GeneID:1252535" regulatory 1108331..1108336 /regulatory_class="ribosome_binding_site" /locus_tag="STM1017" /note="putative RBS for STM1017; RegulonDB:STMS1H001298" CDS 1108337..1108648 /locus_tag="STM1017" /note="hypothetical protein 11 (gi|7467260)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459992.1" /db_xref="GeneID:1252535" /translation="MSNIDKRALREVAERATPGNWRRTSSLFNGITVTPFSLCGEEVT LAHTVEKRDAEFIAAANPATVLALLDVLYEFGEDEVAISEYVTNLEDALRVAAAPQQE E" misc_feature 1108340..>1108645 /locus_tag="STM1017" /note="Ead/Ea22-like protein; Region: Ead_Ea22; pfam13935" /db_xref="CDD:379401" gene 1108726..1109016 /locus_tag="STM1018" /db_xref="GeneID:1252536" CDS 1108726..1109016 /locus_tag="STM1018" /note="hypothetical protein 11 (gi|7467261)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459993.1" /db_xref="GeneID:1252536" /translation="MNYEDKLMYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKV PVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD" gene 1109302..1109541 /locus_tag="STM1019" /db_xref="GeneID:1252537" regulatory 1109302..1109307 /regulatory_class="ribosome_binding_site" /locus_tag="STM1019" /note="putative RBS for STM1019; RegulonDB:STMS1H001299" CDS 1109308..1109541 /locus_tag="STM1019" /note="hypothetical protein 13 (gi|7467262)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459994.1" /db_xref="GeneID:1252537" /translation="MRIELVISRAKQLPEGAVPALEKELITRLQNQYENCNLTIRRGS QDGLSIVGAADGDKKRIQSILQETWESADDWFY" misc_feature 1109347..1109535 /locus_tag="STM1019" /note="DinI-like family; Region: DinI; pfam06183" /db_xref="CDD:428810" gene 1109951..1110559 /locus_tag="STM1020" /db_xref="GeneID:1252538" regulatory 1109951..1109956 /regulatory_class="ribosome_binding_site" /locus_tag="STM1020" /note="putative RBS for STM1020; RegulonDB:STMS1H001300" CDS 1109957..1110559 /locus_tag="STM1020" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459995.1" /db_xref="GeneID:1252538" /translation="MAHELQLIKQSSGILIPATPETSEILQSKIKLGAVLVAEFRQVR NPAFHRRFFALLNLGFEYWEPTGGTISANERKLVNGYAKFLAAYGGNESALLDAAEQY LEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEV EFQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSFAG" misc_feature 1109972..1110550 /locus_tag="STM1020" /note="Protein of unknown function (DUF1367); Region: DUF1367; pfam07105" /db_xref="CDD:429295" gene 1110762..1111379 /locus_tag="STM1021" /db_xref="GeneID:1252539" regulatory 1110762..1110767 /regulatory_class="ribosome_binding_site" /locus_tag="STM1021" /note="putative RBS for STM1021; RegulonDB:STMS1H001301" CDS 1110768..1111379 /locus_tag="STM1021" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459996.1" /db_xref="GeneID:1252539" /translation="MAKLPRRKCANKECRQWFHPIREGQIVCSYQCASAVGKEQTRKA REAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLG CISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVYNVYKSGNIEAYRAALVER YGEAAVLALENNNTPHRWTVEELKEIRLAALADLRALKKLEAA" misc_feature 1110768..1111325 /locus_tag="STM1021" /note="Bacteriophage Lambda NinG protein; Region: NinG; pfam05766" /db_xref="CDD:428621" gene 1111498..1112309 /locus_tag="STM1022" /db_xref="GeneID:1252540" regulatory 1111498..1111503 /regulatory_class="ribosome_binding_site" /locus_tag="STM1022" /note="putative RBS for STM1022; RegulonDB:STMS1H001302" CDS 1111512..1112309 /locus_tag="STM1022" /note="similar to E. coli orf, hypothetical protein (AAC74632.1); Blastp hit to AAC74632.1 (260 aa), 31% identity in aa 11 - 260" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative molecular chaperone, DnaJ family" /protein_id="NP_459997.1" /db_xref="GeneID:1252540" /translation="MNLESLPKYFSPKSMMPGAVPCGITSDTLTITDVMASLGLLTAK AAVGIELYLAKAGVLSSENIIAYIRQLAEQRAERHGALRKMEKGKRSKFLDTMARYVF RDYSLSAASLVTCSSCHGAKLIDAEVFTNKVTYPDGKPPKWVKDTKGISPSDWEVWKS VREQVRVVCKACDGKGHVKNECRCRGRGEILDKKKSELQGVPVYKKCPRCKGRGYPRL KDTEIFKALGVTEMVWRYNYKLFFDRLVEHCHIEESYAEKVLGNVTR" misc_feature 1111584..1111838 /locus_tag="STM1022" /note="Antitermination protein; Region: Antiterm; pfam03589" /db_xref="CDD:427381" misc_feature 1112043..1112282 /locus_tag="STM1022" /note="Antitermination protein; Region: Antiterm; pfam03589" /db_xref="CDD:427381" gene 1112372..1112693 /locus_tag="STM1023" /db_xref="GeneID:1252541" regulatory 1112372..1112377 /regulatory_class="ribosome_binding_site" /locus_tag="STM1023" /note="putative RBS for STM1023; RegulonDB:STMS1H001303" CDS 1112376..1112693 /locus_tag="STM1023" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459998.1" /db_xref="GeneID:1252541" /translation="MPVTLQELRTSPRRGFCFFWWYIPLVSNHRGGDMGFYYVFQYKP KGMSSGKHLNVSEEFSDRNEAKRAKSRHMINDPDCVFSGIVQADSPAAVLQEVQAESL NRL" gene 1112860..1112992 /locus_tag="STM1024" /db_xref="GeneID:1252542" regulatory 1112860..1112865 /regulatory_class="ribosome_binding_site" /locus_tag="STM1024" /note="putative RBS for STM1024; RegulonDB:STMS1H001304" CDS 1112867..1112992 /locus_tag="STM1024" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_459999.1" /db_xref="GeneID:1252542" /translation="MKMHNDPHSMDSQSIFAGSQLLPMEKTSHLALSVGFRSHLA" gene complement(1113128..1113583) /locus_tag="STM1025" /db_xref="GeneID:1252543" CDS complement(1113128..1113577) /locus_tag="STM1025" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460000.1" /db_xref="GeneID:1252543" /translation="MKNTALGKFIFIVGTALLLGGCSGMVMPPYATHGTSVGIIAPAG GYSEWHTDSRNHTTGDSHSQSQGNCTQSEDSQLNENGLTRTHQSNCNTRSQTHSSSTS KTRSSSVGFSVGGPVGASIGLIKQMESMNRAPANDMSSNEMFKNFGF" regulatory complement(1113578..1113583) /regulatory_class="ribosome_binding_site" /locus_tag="STM1025" /note="putative RBS for STM1025; RegulonDB:STMS1H001305" gene complement(1113938..1114456) /locus_tag="STM1026" /db_xref="GeneID:1252544" CDS complement(1113938..1114450) /locus_tag="STM1026" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460001.1" /db_xref="GeneID:1252544" /translation="MCLAEYLISGPGGMDPDIEIDDDTYDECREVLSRILEDAYTQSG TFRRLMNYAYDQELHDVEQRWLLGAGENFGTTVTDEDLESSEGRKVIALNLDDTDDDS IPEYYESNDGPQQFDTTRSFIHEVVHALTHLQDKEDSNPRGPVVEYTNIILKEMGHTS PPRIAYEFSN" misc_feature complement(1113953..1114450) /locus_tag="STM1026" /note="PipA protein; Region: PipA; pfam07108" /db_xref="CDD:369211" regulatory complement(1114451..1114456) /regulatory_class="ribosome_binding_site" /locus_tag="STM1026" /note="putative RBS for STM1026; RegulonDB:STMS1H001306" gene 1114977..1115229 /locus_tag="STM1027" /db_xref="GeneID:1252545" regulatory 1114977..1114982 /regulatory_class="ribosome_binding_site" /locus_tag="STM1027" /note="putative RBS for STM1027; RegulonDB:STMS1H001307" CDS 1114981..1115229 /locus_tag="STM1027" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460002.1" /db_xref="GeneID:1252545" /translation="MAGLIAYGRLIYDGATRKNKWLEGVLCGALSLCVTSALDVVGLP VSISPFVGGIIGFVGVDKLREIAISALKKRAGVNDENQ" misc_feature <1114981..1115217 /locus_tag="STM1027" /note="phage holin, lambda family; Region: holin_lambda; TIGR01594" /db_xref="CDD:273709" gene 1115204..1115665 /locus_tag="STM1028" /db_xref="GeneID:1252546" regulatory 1115204..1115209 /regulatory_class="ribosome_binding_site" /locus_tag="STM1027" /note="putative RBS for STM1028; RegulonDB:STMS1H001308" CDS 1115213..1115665 /locus_tag="STM1028" /note="similar to E. coli bacteriophage lambda lysozyme homolog (AAC73656.1); Blastp hit to AAC73656.1 (165 aa), 40% identity in aa 35 - 161" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage lysozyme" /protein_id="NP_460003.1" /db_xref="GeneID:1252546" /translation="MMRISEKGITLIKEFEGCSLTAYPDPGTGGDPWTIGYGWTHSVD GKPVKPGMMIDEATAERLLNTGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTL SSSTLLRKLNAGDYAGAADEFLRWNKAGGKVLNGLTRRREAERALFLS" misc_feature 1115234..1115659 /locus_tag="STM1028" /note="endolysin and autolysin; Region: lyz_endolysin_autolysin; cd00737" /db_xref="CDD:381599" gene 1115677..1116162 /locus_tag="STM1029" /db_xref="GeneID:1252547" regulatory 1115677..1115682 /regulatory_class="ribosome_binding_site" /locus_tag="STM1029" /note="putative RBS for STM1029; RegulonDB:STMS1H001309" CDS 1115683..1116162 /locus_tag="STM1029" /note="bacteriophage ES18 gp15 protein (gi|1143595)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460004.1" /db_xref="GeneID:1252547" /translation="MFVGLLLVSLIVAGRLANHYRNNAITYKEQRDTVTHRLTLANAT ITDMTKRQRDVAALDEKYTKELADAKAENDALRDDVAAGRRRLYVNATCPAVPTGKST STARMDNAASPRLADSAQRDYFALKERVKTMQKQLEGAQAYIRTQCHGNAGKTSNQW" misc_feature 1115749..1116126 /locus_tag="STM1029" /note="Bacteriophage Rz lysis protein; Region: Phage_lysis; pfam03245" /db_xref="CDD:427215" gene 1116362..1116903 /locus_tag="STM1030" /db_xref="GeneID:1252548" regulatory 1116362..1116367 /regulatory_class="ribosome_binding_site" /locus_tag="STM1030" /note="putative RBS for STM1030; RegulonDB:STMS1H001310" CDS 1116370..1116903 /locus_tag="STM1030" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460005.1" /db_xref="GeneID:1252548" /translation="MDQEIKSLELNITQLSAITGAHRQTIASRLKGVKTSGGNGSNLK IYRLVDILTAMMTMPAVTGENDPNKMKPSDRRAWFQSEMTRIELEKEMRTLIPASEVL SVYAVMAKTVVKTLEILPDLLERDAALPPDALEMTQKIIDQLREDLASMTYQACADAI NGDDDDNGDEGQEEEQE" misc_feature 1116397..1116831 /locus_tag="STM1030" /note="Protein of unknown function (DUF1441); Region: DUF1441; pfam07278" /db_xref="CDD:429379" gene 1116854..1118998 /locus_tag="STM1031" /db_xref="GeneID:1252549" regulatory 1116854..1116859 /regulatory_class="ribosome_binding_site" /locus_tag="STM1030" /note="putative RBS for STM1031; RegulonDB:STMS1H001311" CDS 1116860..1118998 /locus_tag="STM1031" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460006.1" /db_xref="GeneID:1252549" /translation="MMTTVTKGKRKSRNSLASAVVAGCDISSMFRPPRRMKISDAVRK YMRVPRDAGNSVAWESTLTPYVVEAMNCLSSRSYDAVVFVAPARTGKTLGLIDGWISY NIVCDPSDMLVVQMTQDKAQEHSKRRLAKMFRHSPAIARRLSPHRNDNNVHDKTFRDG SFLKIGWPSINVFSSSDFKCVALTDYDRFPEDVDGEGDAFSLASKRTTTFMSLGMTLV ESSPGREITDTRWKPSSPHEAPPTTGILSLYNRGDRRRWYWPCPHCGEYFQPSMANMT GYRHIADPMEASEAARIQCPHCHKLTEPQQKRELNNRGVWLREGQHIDRDGNITGEAR RSRIASFWMEGPAAAYQTWAQLVYKLLTAEEEYERTGSEETLKAVINTDWGLPYQSRR SLEARSGDALMARAEDVSKRTVSDGVRFIVATVDVQGGKKRRFVVQVVGYGAYGERWI IDRYNIRYSLRVNEDGESQPVNPAARPEDWDLLKTDVLEKTYPLAADPEQFMPVLAMA VDSGGEDGVTDNAYAFWRRCKRKGVAGRVYLFKGDSTRREKLITKTYPDNTERSERRA KARGDVPLYLLQTNALKDRVAAALEREEPGANYIHFPDWLGPWFYEELTYEERSADGK WKKPGRGNNEALDLMCYAHALAILRGYERINWEKPPGWARLPEKDAAKTTQPVEVRQQ EQHEGGEKAVKARKKKILPAWGGGSGGGWL" misc_feature 1116899..1118953 /locus_tag="STM1031" /note="Phage terminase, large subunit GpA [Mobilome: prophages, transposons]; Region: gpA1; COG5525" /db_xref="CDD:444276" gene 1119426..1120745 /locus_tag="STM1032" /db_xref="GeneID:1252550" regulatory 1119426..1119431 /regulatory_class="ribosome_binding_site" /locus_tag="STM1032" /note="putative RBS for STM1032; RegulonDB:STMS1H001312" CDS 1119432..1120745 /locus_tag="STM1032" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460007.1" /db_xref="GeneID:1252550" /translation="MEERVIGAKGIIVEPQPLTVAGTLNNALAEQIRARWAEWSVSPD VTGQYTRPVLERLLLRTWLRDGEVFSQMVAGKMPGLEPVAGVPFWLEAMEPDYVPMEQ TDSTNNLIQGIYFNDWQRPKSYIVCKSWPGFATAMVATKLIDAENMLHLKFTRRLNQA RGVTLLAPVIIRLLDLKEYEDSERLAARISAAFAMFIRRSDAMVQDGDAPDYADKDRD LDIEPGTILKDLLPGEDIGTIKSDRPNANLESFRMGQLRAVAAGVRGSFSSIARNYDG TYSAQRQELVEAQEGYAILQDNFIAAVSRPVYRRWLATAITAGVIDVPTDTDMATLFN AVYSGPVMPWIDPLKEANAWRILIRGGAATESDWVRARGGAPAEVKRRRKAEIDENRK LGLVFDTDPAHDPGEQDNAGSEDNSGGDKNAAGDDSRERTRGGKQ" misc_feature 1119432..1120631 /locus_tag="STM1032" /note="Phage portal protein, lambda family; Region: Phage_portal_2; cl19194" /db_xref="CDD:473148" gene 1120662..1122750 /locus_tag="STM1033" /db_xref="GeneID:1252551" regulatory 1120662..1120667 /regulatory_class="ribosome_binding_site" /locus_tag="STM1032" /note="putative RBS for STM1033; RegulonDB:STMS1H001313" CDS 1120669..1122750 /locus_tag="STM1033" /note="similar to E. coli ATP-dependent proteolytic subunit of clpA-clpP serine protease, heat shock protein F21.5 (AAC73540.1); Blastp hit to AAC73540.1 (207 aa), 29% identity in aa 73 - 203" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage Clp protease-like protein" /protein_id="NP_460008.1" /db_xref="GeneID:1252551" /translation="MKTTVAAIKMPPVMTAGNGRGEGSSNSWYSIRAAANNTAEVRIY DEIGGWGISARWFAEELAALGQINRINLHIHSPGGAVLDGIAIYNLLKNHPAQKTVYI DGMACSMASAIAMVGNPIIMPENAMMMIHKPRGVAGGEAEDIREYADLLDKIESVIIP IYTEKTGKTPEDIAAMLAKETWMSGAECVSEGFADKLIQPVKAMACIHSKRVEEFEHM PQSIKGMIIAPQGNAGAQPQPQAKAPESQIQSQAQSLVTVDENAIRARLQEEQRNRIT GIQNVFSLSGDRYASLMAKCIADVDCSLEMAKDRLLAEMAKGITPTNQLNGPQNRAEF HAGMYTGNGNITGDAVRAAVMARAGYEEAQKDNPYNCMTLRELARISLVARGTGVSSM NPMQMIGMAFTHSTSDFGNILLDVANKSILQGWQEAPETFDAWTKKGQLSDFRIAHRV GMGGFSSLRQVREGAEYKYVTTGDKQATIALATYGELFSITRQAIINDDMNMLTDVPM KLGRAAKATIADLVYDVLISNQKLSSDNVALFDKTKHANVLEKAVMDVASLDKARQLM RMQKEGDRHLNIRPAFVLVPTAMESVSNQVIKSVSVKGADINAGIINPVKDFATVIAE PRLDDASQSTFYLTAAKGSDTVEVAYLNGVDEPYIDQQEGFTVDGVTTKVRIDAGVAP VDYRGMVKCTV" misc_feature 1120783..1121259 /locus_tag="STM1033" /note="Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease; Region: S14_ClpP_1; cd07016" /db_xref="CDD:132927" misc_feature order(1120792..1120794,1120798..1120800,1120831..1120836, 1120843..1120845,1120891..1120893,1120912..1120914, 1120924..1120926,1120933..1120935,1120942..1120947, 1120957..1120959,1120981..1120983,1121041..1121043, 1121047..1121049,1121065..1121076,1121095..1121097, 1121104..1121106,1121110..1121112,1121116..1121118, 1121206..1121208,1121212..1121214) /locus_tag="STM1033" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132927" misc_feature order(1120990..1120992,1121059..1121061,1121206..1121208) /locus_tag="STM1033" /note="active site residues [active]" /db_xref="CDD:132927" misc_feature <1122319..1122549 /locus_tag="STM1033" /note="Mu-like prophage major head subunit gpT; Region: Mu-like_gpT; cl01826" /db_xref="CDD:470363" gene 1122834..1123164 /locus_tag="STM1034" /db_xref="GeneID:1252552" regulatory 1122834..1122839 /regulatory_class="ribosome_binding_site" /locus_tag="STM1034" /note="putative RBS for STM1034; RegulonDB:STMS1H001314" CDS 1122841..1123164 /locus_tag="STM1034" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative RecA/RadA recombinase" /protein_id="NP_460009.1" /db_xref="GeneID:1252552" /translation="MAKNYVEDGKTIEIVATTSLKSGDLVQVGDMFAVAVTDIAAGSA GTGIAEGVFSIPKLTTEDIAVGKKVYLKDNVVQTDATGSLPYVGVVWAPAANGDETVP VKING" misc_feature 1122844..1123161 /locus_tag="STM1034" /note="Predicted phage recombinase, RecA/RadA family [Mobilome: prophages, transposons]; Region: COG5471" /db_xref="CDD:444222" gene 1123152..1123456 /locus_tag="STM1035" /db_xref="GeneID:1252553" regulatory 1123152..1123157 /regulatory_class="ribosome_binding_site" /locus_tag="STM1035" /note="putative RBS for STM1035; RegulonDB:STMS1H001315" CDS 1123157..1123456 /locus_tag="STM1035" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage ATP-binding sugar transporter-like protein" /protein_id="NP_460010.1" /db_xref="GeneID:1252553" /translation="MADLFDGMKRRMDALIAERFGMKVNINGTDCIVVESDFLAELGP VEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVTRIRRFNGKPQLTLEENNGGKGA" misc_feature 1123160..1123426 /locus_tag="STM1035" /note="Phage Head-Tail Attachment; Region: Phage_attach; cl05094" /db_xref="CDD:446606" gene 1123429..1124003 /locus_tag="STM1036" /db_xref="GeneID:1252554" regulatory 1123429..1123434 /regulatory_class="ribosome_binding_site" /locus_tag="STM1035" /note="putative RBS for STM1036; RegulonDB:STMS1H001316" CDS 1123437..1124003 /locus_tag="STM1036" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460011.1" /db_xref="GeneID:1252554" /translation="MEVKGLKEAISVLKELDRGYVTRAKIRAINRVAKRVVSVSVRSA AALVVAGDNRRQGIPVRTVRRRARVRLARADKPFANIYVNCDPLTAIRLLSSPPSTPM RGRKGKPLRIGKYRFDRGFIAQAPNGWWQVFERSGAGRYPLNVVKIPVADALRHAFNT QVVLQMKTEMPKELKHEISYELRRFTKK" misc_feature 1123443..1124000 /locus_tag="STM1036" /note="Prophage minor tail protein Z (GPZ); Region: Minor_tail_Z; pfam06763" /db_xref="CDD:284235" gene 1123992..1124401 /locus_tag="STM1037" /db_xref="GeneID:1252555" regulatory 1123992..1123997 /regulatory_class="ribosome_binding_site" /locus_tag="STM1037" /note="putative RBS for STM1037; RegulonDB:STMS1H001317" CDS 1124000..1124401 /locus_tag="STM1037" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460012.1" /db_xref="GeneID:1252555" /translation="MTRHSAVRQAIIAALKKTDDGSTTFFDGRPVVVEEDELPAVAVY LSDAQYTGPEVDGDIWSAVLHVEVFLKATAPDSALDEQMENRVYPALGSVAGLGDIIR TMSAQGYNYQRDDEMAMWGSADLSYDITYSM" misc_feature 1124006..1124392 /locus_tag="STM1037" /note="Phage minor tail protein U; Region: Phage_tail_U; pfam06141" /db_xref="CDD:399267" gene 1124406..1125162 /locus_tag="STM1038" /db_xref="GeneID:1252556" regulatory 1124406..1124411 /regulatory_class="ribosome_binding_site" /locus_tag="STM1038" /note="putative RBS for STM1038; RegulonDB:STMS1H001318" CDS 1124413..1125162 /locus_tag="STM1038" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable major tail protein" /protein_id="NP_460013.1" /db_xref="GeneID:1252556" /translation="MTDTTIPNPLAPVKGANTTFWMYNSEGDPFASPLSDNNWLRLAN VKDLQPGELTADAEDNNYLDDENADWKSTTQGQKSAGDTSVTLAWKPGEDVQKKLIQL FTTGQKRGFRIKYPNGTVDVFRGWVSSLGKTVQSKDEIARTVKITSVGRPYMAEEDAP EVVSVTGLTVEPTNATVKVGATTAVTFTVKPDNVTDKSLRIATSDPTTATVTQAENIA TVKGVKAGTVKIIGMTTDGNFTAIADITVQA" misc_feature 1124473..1124877 /locus_tag="STM1038" /note="Lambda phage tail tube protein, TTP; Region: Phage_TTP_12; pfam16461" /db_xref="CDD:406780" misc_feature 1124908..1125141 /locus_tag="STM1038" /note="Bacterial Ig-like domain (group 2); Region: Big_2; pfam02368" /db_xref="CDD:396788" gene 1125200..1125606 /locus_tag="STM1039" /db_xref="GeneID:1252557" regulatory 1125200..1125205 /regulatory_class="ribosome_binding_site" /locus_tag="STM1039" /note="putative RBS for STM1039; RegulonDB:STMS1H001319" CDS 1125208..1125606 /locus_tag="STM1039" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460014.1" /db_xref="GeneID:1252557" /translation="MFLKKETFTRGDASVALFELSGLQRIEYLEFIQKRTAKYDTDMD GTTEADKRVAYMQMALEINAWLVSRSLLNGDSSQDADTLYQSVQAKWSYEALDAGAES VLMLSGLSADKKDNASDSGNESEDMTPEKS" misc_feature 1125208..1125603 /locus_tag="STM1039" /note="phage minor tail protein G; Region: phage_lambda_G; TIGR01674" /db_xref="CDD:273748" gene 1125597..1125932 /locus_tag="STM1040" /db_xref="GeneID:1252558" regulatory 1125597..1125602 /regulatory_class="ribosome_binding_site" /locus_tag="STM1040" /note="putative RBS for STM1040; RegulonDB:STMS1H001320" CDS 1125603..1125932 /locus_tag="STM1040" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460015.1" /db_xref="GeneID:1252558" /translation="MNNELHFVRQLAREFRRPDWRRMLDEMSSTELSEWADFFRENSF SDALLDAEFSTLKAQVFMLVTGKEIDAADFSLLTLPGAVQSMTEQDLLEVAVGIPGGV RFEPESR" misc_feature 1125630..1125926 /locus_tag="STM1040" /note="Minor tail protein T; Region: Phage_tail_T; pfam06223" /db_xref="CDD:283804" gene 1126006..1128999 /locus_tag="STM1041" /db_xref="GeneID:1252559" regulatory 1126006..1126011 /regulatory_class="ribosome_binding_site" /locus_tag="STM1041" /note="putative RBS for STM1041; RegulonDB:STMS1H001321" CDS 1126012..1128999 /locus_tag="STM1041" /note="lambda phage H tail component homolog (gi|2232364)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460016.1" /db_xref="GeneID:1252559" /translation="MDSSDLVEKRIKRCMESSARSVAASAKSISAAMAQSQVATRTQS DAMAQLAREANEARERAVDLNQKLRAEAAQAAVVAQAQDAAAAAFYRQIDSVKQLSGG LQELQRIQAQVRQAKGRGDISQGDYLALVSEAAAKTRELTDAEALATQKKAQFIRRLK EQTAVQGLSRTELLRVKAAELGVSSAADVYIRKLDTATKSTHALGLKSAMARREIGVL IGELARGNFGALRGSGITLANRAGWIEQLMSPKGMMLGGLVGGVAAAVYGLGKAYYEG AKESEEFNKQLILTGSYAGKTTGKLNEMAKSLAGNGVTQHDAAGVLTQVVGSGAFTGQ AVAMVSRTAARMQENVGQSVDETIRQFKRLQDDPVNAAKELDRALHFLTATQLEQIRV LGEQGRTADAAKIAMSAYSEEMNKRAGDVHDNLGWIEKAWNAVGDAAKWAWDRMLDIG REDTLDEKIATLQEKIARARKTPWTVSSSQTEYDQQQLNELQEQKRQKDLLDAKAQAE RNYQKTQKRRNEQNAALNRDNETESLRHQREVARITAMQYADAAVRNAALERENERHK KAMARQKEKPKAYYNDEAGRLLLQYSQQQAQTEGLIAAAKLSTTEKMTEAHKQLLSFQ QRIADLSGKKLTADEQSVLAHKDEIALALQKLDISQQDLQHQNAFNELKKKTLTLTSQ LADEESRVRQQHALALATMGMGDQQRGRYEEHLKIQQHYQEQLEQLKRDSKAKGTYGS DEYRQAEQELQASLDRRLAEWADYNAKVDAAQGDWTQGASRALDNFLAQGGNVAGMTE NVFTNAFNGMADSIANFAVTGKGSFRSLTVSILADLAKMEARIAASKLLGSVLGMFVF GASAGGSTPSGAYSSAALSVIPNADGGVYRSAGLSQYSGSIVNRPTFFAFARGAAVMG EAGPEAILPLRRGTDGKLGVVAAGSGGMAMFAPQYHIAISNTGPELTPQALKAVYDLG KKAAADFVQQQGRDGGRLSGAYR" misc_feature 1126591..1127184 /locus_tag="STM1041" /note="Prophage tail length tape measure protein; Region: TMP_2; pfam06791" /db_xref="CDD:429120" misc_feature <1127368..1128288 /locus_tag="STM1041" /note="exonuclease SbcC; Region: sbcc; TIGR00618" /db_xref="CDD:129705" misc_feature 1127863..1128882 /locus_tag="STM1041" /note="phage tail tape measure protein, lambda family; Region: tape_meas_lam_C; TIGR01541" /db_xref="CDD:273681" gene 1128991..1129328 /locus_tag="STM1042" /db_xref="GeneID:1252560" regulatory 1128991..1128996 /regulatory_class="ribosome_binding_site" /locus_tag="STM1042" /note="putative RBS for STM1042; RegulonDB:STMS1H001322" CDS 1128996..1129328 /locus_tag="STM1042" /note="lambda phage M tail component homolog (gi|2232363)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460017.1" /db_xref="GeneID:1252560" /translation="MMKTFHWKVDPDMGVDSEPQVSVVRFGDGYEQRRASGINNDLKK YSVTIRVDREDGPGLEGFLSQHNGVKAFLWTPPYGYRQIKVVCRKWSVKAGLLKTTFT ATFEQVIS" misc_feature 1129005..1129322 /locus_tag="STM1042" /note="Phage minor tail protein; Region: Phage_min_tail; pfam05939" /db_xref="CDD:428681" regulatory 1129420..1129425 /regulatory_class="ribosome_binding_site" /note="putative RBS for STM1043; RegulonDB:STMS1H001323" gene 1129427..1129924 /locus_tag="STM1043" /db_xref="GeneID:1252561" CDS 1129427..1129924 /locus_tag="STM1043" /note="attachment and invasion protein homolog (gi|2232362)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage attachment and invasion protein homolog" /protein_id="NP_460018.1" /db_xref="GeneID:1252561" /translation="MKKIVVAVLVGLALGSIGVANAAGYKNTVSIGYAYTDLSGWLSG NANGANIKYNWEDLDSGFGAMGSVTYTSADVNNYGYKVGDADYTSLLVGPSYRFNDYL NAYVMIGAANGHIKDNWGNSDNKTAFAYGAGIQLNPVENIAVNASYEHTSFSTDADSD VKAGT" misc_feature 1129427..1129879 /locus_tag="STM1043" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" gene complement(1130041..1130580) /gene="sodC" /locus_tag="STM1044" /db_xref="GeneID:1252562" CDS complement(1130041..1130574) /gene="sodC" /locus_tag="STM1044" /EC_number="1.15.1.1" /EC_number="6.3.4.21" /note="superoxide dismutase [Cu-Zn] precursor. (SW:SODC_SALTY)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage superoxide dismutase precursor (Cu-Zn)" /protein_id="NP_460019.1" /db_xref="GeneID:1252562" /translation="MKYTILSLVAGALISCSAMAENTLTVKMNDALSSGTGENIGEIT VSETPYGLLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGK HLGPYNDKGHLGDLPGLVVNADGTATYPLLAPRLKSLSELKGHSLMIHKGGDNYSDKP APLGGGGARFACGVIEK" misc_feature complement(1130044..1130574) /gene="sodC" /locus_tag="STM1044" /note="superoxide dismutase [Cu-Zn]; Region: PRK15388" /db_xref="CDD:185286" misc_feature complement(order(1130143..1130148,1130350..1130358, 1130443..1130445,1130449..1130451,1130494..1130496, 1130500..1130502)) /gene="sodC" /locus_tag="STM1044" /note="E-class dimer interface [polypeptide binding]; other site" /db_xref="CDD:238186" misc_feature complement(order(1130215..1130217,1130416..1130418)) /gene="sodC" /locus_tag="STM1044" /note="P-class dimer interface [polypeptide binding]; other site" /db_xref="CDD:238186" misc_feature complement(order(1130125..1130127,1130230..1130232, 1130239..1130241,1130293..1130295,1130362..1130364, 1130368..1130370)) /gene="sodC" /locus_tag="STM1044" /note="active site" /db_xref="CDD:238186" misc_feature complement(order(1130125..1130127,1130293..1130295, 1130362..1130364,1130368..1130370)) /gene="sodC" /locus_tag="STM1044" /note="Cu2+ binding site [ion binding]; other site" /db_xref="CDD:238186" misc_feature complement(order(1130230..1130232,1130239..1130241, 1130266..1130268,1130293..1130295)) /gene="sodC" /locus_tag="STM1044" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238186" regulatory complement(1130575..1130580) /regulatory_class="ribosome_binding_site" /gene="sodC" /locus_tag="STM1044" /note="putative RBS for sodC; RegulonDB:STMS1H001324" gene 1130658..1131359 /locus_tag="STM1045" /db_xref="GeneID:1252563" regulatory 1130658..1130663 /regulatory_class="ribosome_binding_site" /locus_tag="STM1045" /note="putative RBS for STM1045; RegulonDB:STMS1H001325" CDS 1130664..1131359 /locus_tag="STM1045" /note="lambda phage L tail component homolog (gi|2232360)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable minor tail protein" /protein_id="NP_460020.1" /db_xref="GeneID:1252563" /translation="MQDIPQETLSETTKAEQSAKVDLWEFDLTAIGGERFFFCNEPNE KGEPLTWQGRQYEPYPIQVQDFEMNGKGASPRPNLVVANLFGLVTGMAEDLQSLVGAS VVRHQVYSKFLDAVNFSNGNPDADPEQEAVARYNVEQLSELDSSTATIILASPAETDG SVVPGRTMLADSCPWDYRDENCGYDGPPVADEFDKPTSDPKKDKCSHCMKGCEMRNNL VNAGFFASINKLS" misc_feature 1130679..1131356 /locus_tag="STM1045" /note="Phage tail protein [Mobilome: prophages, transposons]; Region: gp18; COG4672" /db_xref="CDD:443709" gene 1131363..1132106 /locus_tag="STM1046" /db_xref="GeneID:1252564" regulatory 1131363..1131368 /regulatory_class="ribosome_binding_site" /locus_tag="STM1046" /note="putative RBS for STM1046; RegulonDB:STMS1H001326" CDS 1131369..1132106 /locus_tag="STM1046" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable tail assembly protein" /protein_id="NP_460021.1" /db_xref="GeneID:1252564" /translation="MINDDILAHARQCAPAESCGYVVRTAQGERYFPCENLSAEPTMY FRISPEDYLNARNRGDIVALVHSHPDGKPCLSSADRTLQIQSGLDWWLVCDNRIHKFR CVPHLTGRQFEHGVTDCYTLFRDAYHLAGIDMPDFDREDDWWSQGKSLYLDHLEAAGF YRVNPEDAQPGDVLICCFGSPTPNHAAIYCGNGELLHHIPEQLSKREGYNDKWQRRTH SIWRHRQWCESAFTGIYNDLESASASA" misc_feature 1131369..1131686 /locus_tag="STM1046" /note="Mpr1p, Pad1p N-terminal (MPN) domains with catalytic isopeptidase activity (metal-binding) found in proteins also containing NlpC/P60 domains; Region: MPN_NLPC_P60; cd08073" /db_xref="CDD:163704" misc_feature order(1131417..1131419,1131564..1131566,1131570..1131572, 1131594..1131596,1131603..1131605) /locus_tag="STM1046" /note="MPN+ (JAMM) motif [active]" /db_xref="CDD:163704" misc_feature order(1131564..1131566,1131570..1131572,1131603..1131605) /locus_tag="STM1046" /note="Zinc-binding site [ion binding]; other site" /db_xref="CDD:163704" misc_feature 1131693..1132034 /locus_tag="STM1046" /note="NlpC/P60 family; Region: NLPC_P60; cl21534" /db_xref="CDD:473902" gene 1131997..1132708 /locus_tag="STM1047" /db_xref="GeneID:1252565" regulatory 1131997..1132002 /regulatory_class="ribosome_binding_site" /locus_tag="STM1047" /note="putative RBS for STM1047; RegulonDB:STMS1H001327" CDS 1132004..1132708 /locus_tag="STM1047" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable tail assembly protein" /protein_id="NP_460022.1" /db_xref="GeneID:1252565" /translation="MATTDTLNMAAPAMVRICLYGDLQRFGKRISLSIKTAAEGIHAL AIQLPGFRQRMNEGWYQVRIAGSDMAPDTLTARLNESLPPGAVVHIVPRMAGAKNGIW QVVAGAALIGASFIPGLNAVAAAVLFSAGTSMALGGVAQMLTPVPKTPTVGQADNGKQ NTYFSSLENMVAQGNPVPVLYGEMKIGSRVISQMMSTRDESTSGKVVVIGSPLQANTT SRQDGGITRPSVVIRQ" misc_feature 1132040..1132606 /locus_tag="STM1047" /note="Phage-related protein, tail assembly protein I [Mobilome: prophages, transposons]; Region: COG4723" /db_xref="CDD:443758" gene 1132772..1135227 /locus_tag="STM1048" /db_xref="GeneID:1252566" regulatory 1132772..1132777 /regulatory_class="ribosome_binding_site" /locus_tag="STM1048" /note="putative RBS for STM1048; RegulonDB:STMS1H001328" CDS 1132780..1135227 /locus_tag="STM1048" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage host specificity protein J, phage lambda" /protein_id="NP_460023.1" /db_xref="GeneID:1252566" /translation="MSKGGGKGHTPREAKDDLKSTQQLSVIDALSEGPIVGPVNGLQS VLINNTPVVDADGNSNIHGVTVVYQVGETPQAPLEGFEASGAETVLGVEVKHDNPVTR TVVSENVDRLRFTFGVQMLQETTDKGDRNPSSVNLLIQFQRSGIWNTEFDITINGKIT TQYLASVVADNLPPRPFSVRMVRVTPDSTTDRLQNKTLWSSYTEIIDIRQGYPGTAVA GLLVDAEQFGSQQVTRNYHLRGRIFQVPSNYDPDTRTYTGLWDGAFKPAYTNNPAWCT MDKLTHPRYGLGRRIGGADVDKWALYAIAQYCDQPVPDGFGGTEPRMTLNAYITTQRK AYDVLADFCSVMRCMPVWNGRKMTFIQDRPSDKAWTYTNGNVVGGRFKYSFSALKDRH NAVEVRYTDPLNGWQTSTELVEDHASQARYGRNLLKMDAFGCTSRGQAHRTGLWVMMT ELLETQTVDFSVGAEGLRHTPGDIIEVCDNDYAGASVGGRITDLDISTRTLTLDREIT LPESGATTLNIVGPDGKPFSTEIQSQPAPDRVVTKVLPETVQPYSIWGLKLPSLKRRL FRCVRIKENDDGTYAITALQHVPEKESIVDNGAHFDPLPGTTNSIIPPAVQHLTVSTD NDSTLYQAKAKWGTPRVVKDVRFVVRLTTGSGNEGDPVRLVTTATTSETEYAFHELPL GDYTLTVRAINGYGQQGEPASVAFSIQAPEAPSTIEMTPGYFQITVTPHQTVYDASVQ YEFWYSATQLATAADIQSKAQYLGVGSFWIKDGLKPLHDAWFYVRSVNLAGKSVFAEA SGRPGMTRKGIWIFLRD" misc_feature 1133425..>1135224 /locus_tag="STM1048" /note="Phage-related protein, tail protein J [Mobilome: prophages, transposons]; Region: COG4733" /db_xref="CDD:443767" gene 1136453..1138902 /locus_tag="STM1049" /db_xref="GeneID:1252567" regulatory 1136453..1136458 /regulatory_class="ribosome_binding_site" /locus_tag="STM1049" /note="putative RBS for STM1049; RegulonDB:STMS1H001329" CDS 1136464..1138902 /locus_tag="STM1049" /note="similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 49% identity in aa 3 - 549, 57% identity in aa 878 - 1084, 43% identity in aa 1008 - 1122, 32% identity in aa 354 - 568, 26-1073758628dentity in aa 961 - 1111, 24% identity in aa 959 - 1113, 27-1073758654dentity in aa 940 - 1106, 26% identity in aa 766 - 829, 36% identity in aa 822 - 851" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage probable tail fiber protein" /protein_id="NP_460024.1" /db_xref="GeneID:1252567" /translation="MPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPD DAGRYSMDVEQGQYTVTLLVDGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEA LRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQASESATAAVNAAGAAEASAT QAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADASRTAA GDSAAAAAASATAAQTSAERAGASETAAKTSETQAASSAGDAGASATAAAASEKAAAA SAAAAKTSETNAATSASTAAASATAASSSASEASTHAAASDTSASLAAQSSTAAGAAA TRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVHAVMDEVQ TKAPLDSPALTGTPTAPTPETAAAGIEIATAAFVAAKVAQLVGSAPETLDTLKELADA LGNDPNFATTVLNKLAGKQPLDDTLTALSGKSVDGLIEYVGLRETINHAADALLKSQN GGDIPEKPLFVQNIGALPASGTAVAANRLASRGALPALTGATRGSDSGLIMGEVYNNG YPTQYGNILRLTGTGDGEILIGWSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTSLNP PPNSYPVGAAIAWPSDATPAGYALMQGQSFDKSAYPLLAIAYPSGIIPDMRGWTIKGK PISGRAVLSQEMDGNKSHSHSARAQDTDLGTKSTSSFDYGTKSTNTTGNHTHQFGGYI NSYWGDSNHTSFQPGGGAWTQAAGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAET TVKNIAFNYIVRLA" misc_feature 1136464..1136865 /locus_tag="STM1049" /note="Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain; Region: Peptidase_M14NE-CP-C_like; cl21470" /db_xref="CDD:473874" misc_feature <1137520..1137762 /locus_tag="STM1049" /note="Phage-related tail fiber protein [Mobilome: prophages, transposons]; Region: COG5301" /db_xref="CDD:444101" misc_feature 1137532..1137645 /locus_tag="STM1049" /note="Phage tail fibre repeat; Region: Phage_fiber_2; pfam03406" /db_xref="CDD:427282" misc_feature 1138357..1138500 /locus_tag="STM1049" /note="Phage Tail Collar Domain; Region: Collar; pfam07484" /db_xref="CDD:429485" gene 1138890..1139483 /locus_tag="STM1050" /db_xref="GeneID:1252568" regulatory 1138890..1138895 /regulatory_class="ribosome_binding_site" /locus_tag="STM1050" /note="putative RBS for STM1050; RegulonDB:STMS1H001330" CDS 1138902..1139483 /locus_tag="STM1050" /note="tail fiber assembly like-protein (gi|8927433)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage tail fiber assembly like-protein" /protein_id="NP_460025.1" /db_xref="GeneID:1252568" /translation="MTFKMSEQAQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTD IAPPDIPASHIAIFDAETQTWSLHEDHRGEMVYDTTTGNQVYISAPGPLPENVTSVSP GGEYQKWDGKAKVWVKDEAAEKAAQLRQAEETKSRLLQMASEKIAPLQDAVDLGIATD DEKARLDEWKKYRVLVNRMDTAAPDWPERPASQ" misc_feature 1139115..1139474 /locus_tag="STM1050" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; pfam02413" /db_xref="CDD:426761" gene 1139954..1140927 /gene="sseI" /locus_tag="STM1051" /db_xref="GeneID:1252569" regulatory 1139954..1139959 /regulatory_class="ribosome_binding_site" /gene="sseI" /locus_tag="STM1051" /note="putative RBS for sseI; RegulonDB:STMS1H001331" CDS 1139959..1140927 /gene="sseI" /locus_tag="STM1051" /note="secreted effector I (gi|8927434)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage putative type III secreted protein" /protein_id="NP_460026.1" /db_xref="GeneID:1252569" /translation="MPFHIGSGCLPAIISNRRIYRIAWSDTPPEMSSWEKMKEFFCST HQAEALECIWTICHPPAGTTREDVVSRFELLRTLAYDGWEENIHSGLHGENYFCILDE DSQEILSVTLDDVGNYTVNCQGYSETHHLTMATEPGVERTDITYNLTSDIDAAAYLEE LKQNPIINNKIMNPVGQCESLMTPVSNFMNEKGFDNIRYRGIFIWDKPTEEIPTNHFA VVGNKEGKDYVFDVSAHQFENRGMSNLNGPLILSADEWVCKYRMATRRKLIYYTDFSN SSIAANAYDALPRELESESMAGKVFVTSPRWFNTFKKQKYSLIGKM" misc_feature 1140049..1140924 /gene="sseI" /locus_tag="STM1051" /note="type III secretion system effector SseI; Region: PRK15372" /db_xref="CDD:185270" gene 1140995..1141443 /locus_tag="STM1052" /note="pseudogene; in-frame stop following codon 112" /pseudo /db_xref="GeneID:1252570" gene complement(1141575..1142214) /locus_tag="STM1053" /db_xref="GeneID:1252571" CDS complement(1141575..1142201) /locus_tag="STM1053" /note="similar to E. coli orf, hypothetical protein (AAC74998.1); Blastp hit to AAC74998.1 (217 aa), 85% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460027.1" /db_xref="GeneID:1252571" /translation="MCGRFAQAQTREEYLAYLADEADRNIAYDPQPIGRYNVAPGTKV LLLSERDEQLHLDPVIWGYAPGWWDKAPLINARVATAASSRMFKPLWQHGRAICFADR WFEWKKEGDKKQPYFIHRKDGKPIFMAAIGSTPFERGDEAEGFLIVTSAADKGLVDIH DRRPLALTPETARVWMRQFLEPHSKSITYRVIPALTRPMMRKDTNPCQ" misc_feature complement(1141578..1142201) /locus_tag="STM1053" /note="hypothetical protein; Provisional; Region: PRK09951" /db_xref="CDD:182162" regulatory complement(1142209..1142214) /regulatory_class="ribosome_binding_site" /locus_tag="STM1053" /note="putative RBS for STM1053; RegulonDB:STMS1H001332" gene complement(1142270..1142575) /locus_tag="STM1054" /db_xref="GeneID:1252572" CDS complement(1142270..1142569) /locus_tag="STM1054" /note="hypothetical protein (gi|5410523)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460028.1" /db_xref="GeneID:1252572" /translation="MYHFMIVNLYQDNYSGYRQHGGAEVQILSCRPKFPLKTSLSGLF FLWLNFLRGSYGVKLGNKAVEIRRNLRLIHQFAHCSVSEFINTQIFISNYCINSL" gene complement(1142554..1143243) /locus_tag="STM1055" /db_xref="GeneID:1252573" CDS complement(1142554..1143240) /locus_tag="STM1055" /note="hypothetical protein (gi|5410522)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460029.1" /db_xref="GeneID:1252573" /translation="MLRHIQNSLGSVYRSNTATPQGQIIHHRNFQSQFDTTGNTLYNN CWVCSLNVIKSRDGNNYSALEDITSDNQAFNNILEGIDIIECENLLKEMNVQKIPESS LFTNIKEALQAEVFNSTVEDDFESFISYELQNHGPLMLIRPSLGSECLHAECIVGYDS EVKKVLIYDSMNTSPEWQSNIDVYDKLTLAFNDKYKNEDCSICGLYYDGVYEPKPLHS SSWKDWCTIL" misc_feature complement(1142599..1143120) /locus_tag="STM1055" /note="Salmonella enterica effector protein GtgE; Region: GtgE; cd21501" /db_xref="CDD:411070" misc_feature complement(order(1142635..1142637,1142659..1142661, 1142683..1142688,1142695..1142700,1142704..1142706, 1142728..1142730,1142788..1142811,1142815..1142817, 1142983..1142985,1142992..1143012,1143103..1143120)) /locus_tag="STM1055" /note="Rab GTPase binding site [polypeptide binding]; other site" /db_xref="CDD:411070" regulatory complement(1142570..1142575) /regulatory_class="ribosome_binding_site" /locus_tag="STM1054" /note="putative RBS for STM1054; RegulonDB:STMS1H001333" regulatory complement(1143238..1143243) /regulatory_class="ribosome_binding_site" /locus_tag="STM1055" /note="putative RBS for STM1055; RegulonDB:STMS1H001334" gene complement(1143511..1143702) /locus_tag="STM1056" /db_xref="GeneID:1252574" CDS complement(1143511..1143702) /locus_tag="STM1056" /note="similar to msgA; hypothetical protein (gi|5410521)" /codon_start=1 /transl_table=11 /product="Gifsy-2 prophage protein" /protein_id="NP_460030.1" /db_xref="GeneID:1252574" /translation="MFVELVYDKRNVEGLEGASEIILAELTKQVHQIFPDAEVRVKPM QANCLNSDTNKSDRENLNR" misc_feature complement(<1143514..1143657) /locus_tag="STM1056" /note="DinI-like family; Region: DinI; cl11630" /db_xref="CDD:448327" gene 1144119..1146741 /gene="pepN" /locus_tag="STM1057" /db_xref="GeneID:1252575" regulatory 1144119..1144124 /regulatory_class="ribosome_binding_site" /gene="pepN" /locus_tag="STM1057" /note="putative RBS for pepN; RegulonDB:STMS1H001335" CDS 1144129..1146741 /gene="pepN" /locus_tag="STM1057" /EC_number="3.4.11.2" /note="similar to E. coli aminopeptidase N (AAC74018.1); Blastp hit to AAC74018.1 (870 aa), 94% identity in aa 1 - 870" /codon_start=1 /transl_table=11 /product="aminopeptidase N" /protein_id="NP_460031.1" /db_xref="GeneID:1252575" /translation="MTQQPQAKYRHDYRAPDYQITDIDLTFDLDAEKTVVTAISQAVR HGAPDAPLRLDGEDLTLVSIHVNDAPWTAYKEEEGALVISDLPERFTLRIVNEISPAA NTALEGLYQSGDALCTQCEAEGFRHITWYLDRPDVLARFTTKIIADKSKYPFLLSNGN RVAQGELENGRHWVQWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRG NLDRAPWAMTSLKNSMKWDEARFGLEYDLDIYMIVAVDFFNMGAMENKGLNIFNSKYV LARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDL GSRAVNRISNVRTMRGLQFAEDASPMAHPIRPDKVIEMNNFYTLTVYEKGAEVIRMIH TLLGEENFQKGMQLYFERHDGSAATCDDFVQAMEDASNVDLSHFRRWYSQSGTPIVTV KDDYNPETEQYTLTISQRTPATADQAEKQPLHIPFAIELYDNEGNVIPLQKGGHPVNA VLNVTQAEQTFTFDNVYFQPVPALLCEFSAPVKLEYKWSDQQLTFLMRHARNDFSRWD AAQSLLATYIKLNVARHQQGQPLSLPVHVADAFRAVLLDEKIDPALAAEILTLPSANE IAELFEVIDPIAIAQVREALTRTLAAELADEFLAIYNANHLDEYRVDHGDIGKRTLRN ACLRFLAFGETELANTLVSKQYRDANNMTDALAALSAAVAAQLPCRDTLMQEYDDKWH QDGLVMDKWFILQSTSPAENVLETVRGLLKHRSFSMSNPNRIRSLIGAFAGSNPAAFH AQDGSGYQFLVEMLTDLNSRNPQVASRLIEPLIRLKRYDDKRQEKMRAALEQLKGLEN LSGDLYEKITKALA" misc_feature 1144129..1146738 /gene="pepN" /locus_tag="STM1057" /note="aminopeptidase N; Provisional; Region: pepN; PRK14015" /db_xref="CDD:237585" misc_feature order(1144483..1144485,1144489..1144491,1144900..1144920, 1145008..1145010,1145017..1145022,1145029..1145031, 1145083..1145088,1145245..1145247,1145254..1145256, 1145269..1145274) /gene="pepN" /locus_tag="STM1057" /note="active site" /db_xref="CDD:341063" protein_bind 1146850..1146866 /note="putative binding site for PurR, RegulonDB: STMS1H000350" /bound_moiety="PurR" gene 1146875..1147959 /gene="pyrD" /locus_tag="STM1058" /db_xref="GeneID:1252576" regulatory 1146875..1146883 /regulatory_class="minus_35_signal" /gene="pyrD" /locus_tag="STM1058" /note="putative -35_signal for pyrD; RegulonDB:STMLTH004465" regulatory 1146903..1146911 /regulatory_class="minus_10_signal" /gene="pyrD" /locus_tag="STM1058" /note="putative -10_signal for pyrD; RegulonDB:STMLTH004465" regulatory 1146938..1146943 /regulatory_class="ribosome_binding_site" /gene="pyrD" /locus_tag="STM1058" /note="putative RBS for pyrD; RegulonDB:STMS1H001336" CDS 1146949..1147959 /gene="pyrD" /locus_tag="STM1058" /EC_number="1.3.98.1" /note="dihydroorotate dehydrogenase. (SW:PYRD_SALTY)" /codon_start=1 /transl_table=11 /product="dihydro-orotate oxidase" /protein_id="NP_460032.1" /db_xref="GeneID:1252576" /translation="MYYPFVRKALFQLDPERAHEFTFQQLRRITGTPLEALVRQKVPT KPVTCMGLTFKNPLGLAAGLDKDGECIDALGAMGFGSLEIGTVTPRPQPGNDKPRLFR LVDAEGLINRMGFNNLGVDNLVENVKKAHFDGILGINIGKNKDTPVENGKDDYLICME KVYAYAGYIAINISSPNTPGLRTLQYGDALDDLLTAIKNKQNDLQAIHHKYVPVAVKI APDLCEEELIQVADSLLRHNIDGVIATNTTLDRSLVQGMKNCQQTGGLSGRPLQLKST EIIRRLSQELKGQLPIIGVGGIDSVIAAREKIAAGATLVQIYSGFIFKGPPLIKEIVT HI" misc_feature 1146949..1147956 /gene="pyrD" /locus_tag="STM1058" /note="quinone-dependent dihydroorotate dehydrogenase; Region: PRK05286" /db_xref="CDD:235388" gene 1148119..1148667 /gene="ycbW" /locus_tag="STM1059" /db_xref="GeneID:1252577" regulatory 1148119..1148124 /regulatory_class="ribosome_binding_site" /gene="ycbW" /locus_tag="STM1059" /note="putative RBS for ycbW; RegulonDB:STMS1H001337" CDS 1148125..1148667 /gene="ycbW" /locus_tag="STM1059" /note="similar to E. coli orf, hypothetical protein (AAC74032.1); Blastp hit to AAC74032.1 (192 aa), 90% identity in aa 13 - 192" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460033.1" /db_xref="GeneID:1252577" /translation="MRIKPDDNWRWYYDEEHDRMMLDLANGMLFRSRFSRKMLTPDAF CPTGFCVDDAALYFSFEEKCRDFELTKEQRAELVLNALVAIRYLKPQMPKSWHFVAHG EMWTPGTGDAASVWLSDTAEQVNLLVVEPGENAALCLLAQPGVVIAGRTMQLGDAIKI MNDRLKPQVHCHSFSLEQAV" misc_feature 1148128..1148625 /gene="ycbW" /locus_tag="STM1059" /note="Cell-division protein ZapC; Region: ZapC; pfam07126" /db_xref="CDD:429305" gene complement(1148664..1149786) /locus_tag="STM1060" /db_xref="GeneID:1252578" CDS complement(1148664..1149773) /locus_tag="STM1060" /note="similar to E. coli orf, hypothetical protein (AAC74033.1); Blastp hit to AAC74033.1 (369 aa), 86% identity in aa 1 - 367" /codon_start=1 /transl_table=11 /product="putative iron-sulfur protein" /protein_id="NP_460034.1" /db_xref="GeneID:1252578" /translation="MATLSRLFIHPVKSMRGIGLTHALADISGLAFDRIFMVTEPDGT FITARQFPQMVRFTPSPLHDGLHLTAPDGSSALVRFTDFTPQDAPTEVWGNHFTARVA PTAINQWLSGFFSRDVQLRWVGPQLTRRVKRHNAVPLGFADGYPYLLTNEASLRDLQQ RCPAGVQMEQFRPNLVVSGVAAWEEDSWKVLRIGDVIFDVVKPCSRCIFTTVSPEKGQ KHPSGEPLATLQAFRTALDNGDVDFGQNLIARNSGVIRVGDEVEILATAPAKAYGATT VDNSVTPEKHPDASVTIDWQGQTFCGNNQQVLLEQLENQGIRIPYSCRAGICGCCRIR LLEGEVSPLKKSAMGDDGTILSCSCVPKTALRLEN" misc_feature complement(1148979..1149773) /locus_tag="STM1060" /note="N-hydroxylaminopurine reductase subunit YcbX, contains MOSC domain [Nucleotide transport and metabolism, Defense mechanisms]; Region: YcbX; COG3217" /db_xref="CDD:442450" misc_feature complement(1148670..1148909) /locus_tag="STM1060" /note="Ferredoxin [Energy production and conversion]; Region: Fdx; COG0633" /db_xref="CDD:440398" regulatory complement(1149781..1149786) /regulatory_class="ribosome_binding_site" /locus_tag="STM1060" /note="putative RBS for STM1060; RegulonDB:STMS1H001338" gene 1149872..1151980 /gene="ycbY" /locus_tag="STM1061" /db_xref="GeneID:1252579" CDS 1149872..1151980 /gene="ycbY" /locus_tag="STM1061" /note="similar to E. coli putative oxidoreductase (AAC74034.1); Blastp hit to AAC74034.1 (702 aa), 92% identity in aa 1 - 702" /codon_start=1 /transl_table=11 /product="putative N6-adenine-specific DNA methylase" /protein_id="NP_460035.1" /db_xref="GeneID:1252579" /translation="MNSLFASTARGLEELLKTELEKLGAVGCQVVQGGVHFQGDTRLI YQSLMWSRLASRIILPMGECKVYSDLDLYLGVQAINWTEIFNPGATFAVHFSGLNDTI RNSQYGAMKVKDAIVDAFTRKNLPRPNVDRESPDLRINVWLNKETASIALDLSGDGLH LRGYRDRTGLAPIKETLAAAIVMRSGWQPGTPLLDPMCGSGTLLIEAAMWATDRAPGL HRGHWGFSGWAQHDETIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIERARSNAR RAGIGELITFEVKDVAQLSNPLPKGPYGTVISNPPYGERLDSEPALIALHSLLGRTMK NQFGGWNLSLFSASPDLLGSLQLRADKQFKAKNGPLDCVQKNYHIAETTADSKPATVA EDYANRLRKNLKKLEKWARQEGIECYRLYDADLPEYNVAVDRYGDWAVIQEYAPPKTV DAQKARQRLFDIIAATLSVLGIPPNKLVLKTRERQKGKNQYQKMSEKGEFLEVSEYNA RLWVNLTDYLDTGLFLDHRIARRMLGEMSKGKDFLNLFSYTGSASVHAGLGGARSTTT VDMSRTYLEWAERNLRLNGLSGRAHRLIQADCLGWLREANEQFDLIFIDPPTFSNSKR MEESFDVQRDHVALMKDLKRLLRKGGTIMFSNNKRGFRMDLEGLAELGLTAQEITQKT LSPDFARNRQIHNCWLIRAA" misc_feature 1149872..1151977 /gene="ycbY" /locus_tag="STM1061" /note="bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL; Region: rlmL; PRK11783" /db_xref="CDD:236981" gene 1151981..1153900 /gene="uup" /locus_tag="STM1062" /db_xref="GeneID:1252580" regulatory 1151981..1151986 /regulatory_class="ribosome_binding_site" /gene="uup" /locus_tag="STM1062" /note="putative RBS for uup; RegulonDB:STMS1H001339" CDS 1151993..1153900 /gene="uup" /locus_tag="STM1062" /note="contains duplicated ATPase domain; similar to E. coli putative ATP-binding component of a transport system (AAC74035.1); Blastp hit to AAC74035.1 (635 aa), 94% identity in aa 1 - 634" /codon_start=1 /transl_table=11 /product="putative ATPase component of ABC transporter" /protein_id="NP_460036.1" /db_xref="GeneID:1252580" /translation="MSLISMHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKST LMKILNREQGLDDGRIIYEQDLIVARLQQDPPRNIAGSVYDFVAEGIEEQAEYLKRYH EISRLVMTDPSEKNLNEMARVQEQLDHHNLWQLENRINEVLAQLGLDPNAALSSLSGG WLRKAALGRALVSNPRVLLLDEPTNHLDIETIDWLEGFLKTFNGTIIFISHDRSFIRN MATRIVDLDRGKLVTYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKA RRTRNEGRVRALKAMRRERSERREVMGTAKMQVEEATRSGKIVFEMENVDYQVEGKQL VKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHVGTKLEVAYFDQHRA ELDPEKTVMDNLAEGKQEVMVNGKPRHVLGYLQDFLFHPKRAMTPVRALSGGERNRLL LARLFLKPSNLLILDEPTNDLDVETLELLEELIDGYQGTVLLVSHDRQFVDNTVTECW IFEGGGKIGRYIGGYHDARAQQEQHLATKQPMAKKNEEVIAPKAEIVKRGSSKLSYKL QRELEQLPGQLEDLEAKLEALQAQVADAAFFSQPHEQTQKVLADLSQAEQELEQAFER WEYLEGLKNGA" misc_feature 1151993..1153897 /gene="uup" /locus_tag="STM1062" /note="ABC transporter ATPase component; Reviewed; Region: PRK11147" /db_xref="CDD:236861" gene 1153904..1155168 /gene="pqiA" /locus_tag="STM1063" /db_xref="GeneID:1252581" regulatory 1153904..1153909 /regulatory_class="ribosome_binding_site" /gene="pqiA" /locus_tag="STM1063" /note="putative RBS for pqiA; RegulonDB:STMS1H001340" CDS 1153915..1155168 /gene="pqiA" /locus_tag="STM1063" /note="similar to E. coli paraquat-inducible protein A (AAC74036.1); Blastp hit to AAC74036.1 (417 aa), 89% identity in aa 1 - 417" /codon_start=1 /transl_table=11 /product="paraquat-inducible protein A" /protein_id="NP_460037.1" /db_xref="GeneID:1252581" /translation="MCEHHHAAKHILCPQCDMLVALPRLSHGQKAACPRCGATLTTEW DAPRQRPTAYALAALFMLLLSNLFPFVNMNVAGVTSEVTLLEIPGVMFSEDYASLGTF FLLFVQLVPAFCLVTILLLVNRASLPLSVKKTLARIFFLLKSWGMAEIFLAGVLVSFV KLMAYGDIGIGSSFIPWCLFCLVQLRAFQCVDRRWLWDDIAPQPALAQPLTPGITGIR QSLRSCACCTAILPAESLVCPRCHTKGYVRRKNSLQWTLALLFTSIMLYLPANILPIM ITDLLGSKMPSTILAGVILLWSEGSYPVAAVIFLASIMVPTLKMIAIAWLCWDAKGHG KRDSERMHFIYEVVEFVGRWSMIDVFVIAVLSALVRMGGLMNIYPAMGALMFALVVIM TMFSAMTFDPRLSWDREYEPGHEES" misc_feature 1153915..1155165 /gene="pqiA" /locus_tag="STM1063" /note="membrane integrity-associated transporter subunit PqiA; Region: PRK15103" /db_xref="CDD:237910" gene 1155157..1156813 /gene="pqiB" /locus_tag="STM1064" /db_xref="GeneID:1252582" regulatory 1155157..1155162 /regulatory_class="ribosome_binding_site" /gene="pqiA" /locus_tag="STM1063" /note="putative RBS for pqiB; RegulonDB:STMS1H001341" CDS 1155173..1156813 /gene="pqiB" /locus_tag="STM1064" /note="similar to E. coli paraquat-inducible protein B (AAC74037.1); Blastp hit to AAC74037.1 (546 aa), 89% identity in aa 1 - 546" /codon_start=1 /transl_table=11 /product="paraquat-inducible protein B" /protein_id="NP_460038.1" /db_xref="GeneID:1252582" /translation="MEPKKGEAKVQKVKNWSPVWIFPIVTALIGAWILFYHYSHQGPE VTLITTNAEGIEGGKTTIKSRSVDVGVVESATLTDDLTHVQIKARLHSGMEKLLHKDS VFWVVKPQVGREGISGLGTLLSGAYIELQPGSKGSQPESYQLLDSPPLAPPDAKGIRV ILDSKKAGQLSPGDPVLFRGYRVGSVETSSFDPQKRTMSYQLFIKAPNDRLVTSNVRF WKDSGIAVDLTSAGMRVEMGSLTTLFGGGVSFDVPEGLEQGQPVAEKTAFNLYDDQKS IQDSLYTDHIDYLMFFKDSVRGLQPGAPLEFRGIRLGTVSKVPFFASKMRQVFNDDYR IPVLVRIEPERLKAQLGENADVGAHLTELLKRGLRASLKTGNLVTGALYVDLDFYPKE PPITGLREFDGYEIIPTVSSGLAQIQQRLVETLDKINNLPLNPMIEQATNTLSESQRT MRRLQTTLDNMNKITSSQSMQQLPADMQTTLRELNRSMQGFQPGSAAYNKMVADMQRL DQVLRELQPVLKTLNEKSNALVFEAKDKKDPEPKRAKQ" misc_feature 1155173..1156810 /gene="pqiB" /locus_tag="STM1064" /note="intermembrane transport protein PqiB; Region: PRK10807" /db_xref="CDD:182747" gene 1156798..1157373 /gene="ymbA" /locus_tag="STM1065" /db_xref="GeneID:1252583" regulatory 1156798..1156803 /regulatory_class="ribosome_binding_site" /gene="ymbA" /locus_tag="STM1065" /note="putative RBS for ymbA; RegulonDB:STMS1H001342" CDS 1156810..1157373 /gene="ymbA" /locus_tag="STM1065" /note="similar to E. coli orf, hypothetical protein (AAC74038.1); Blastp hit to AAC74038.1 (182 aa), 83% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_460039.1" /db_xref="GeneID:1252583" /translation="MKKWLVVIMAFWLASCSSGGENKSYYQLPIAQSGVQSTASQGNR LLWVEQVSVPDYLAGNGVVYQTSDVQYVIANNNLWASPLDQQLRNTLVANLSARLPGW VVASQPLGTTQDTLNVTVTGFHGRYDGKVIVSGEWLLNHNGQLIKRPFHIEASQQKDG YDEMVKVLASAWSQEAAAIADEIKRLP" misc_feature 1156816..1157361 /gene="ymbA" /locus_tag="STM1065" /note="membrane integrity-associated transporter subunit PqiC; Region: pqiC; NF033620" /db_xref="CDD:468113" gene 1157615..1157796 /gene="rmf" /locus_tag="STM1066" /db_xref="GeneID:1252584" regulatory 1157615..1157620 /regulatory_class="ribosome_binding_site" /gene="rmf" /locus_tag="STM1066" /note="putative RBS for rmf; RegulonDB:STMS1H001343" CDS 1157629..1157796 /gene="rmf" /locus_tag="STM1066" /note="similar to E. coli ribosome modulation factor (AAC74039.1); Blastp hit to AAC74039.1 (55 aa), 92% identity in aa 1 - 55" /codon_start=1 /transl_table=11 /product="ribosome modulation factor (involved in dimerization of 70S ribosomes)" /protein_id="NP_460040.1" /db_xref="GeneID:1252584" /translation="MKRQKRDRLERAHQRGYQAGIAGRSKEMCPYQTLNQRSYWLGGW RQAMEDRAVMA" misc_feature 1157629..1157793 /gene="rmf" /locus_tag="STM1066" /note="ribosome modulation factor; Provisional; Region: PRK14563" /db_xref="CDD:184747" gene complement(1157896..1158479) /gene="fabA" /locus_tag="STM1067" /db_xref="GeneID:1252585" CDS complement(1157896..1158414) /gene="fabA" /locus_tag="STM1067" /EC_number="4.2.1.59" /note="trans-2-decenoyl-ACP isomerase; similar to E. coli beta-hydroxydecanoyl thioester dehydrase, trans-2-decenoyl-ACP isomerase (AAC74040.1); Blastp hit to AAC74040.1 (172 aa), 98% identity in aa 1 - 172" /codon_start=1 /transl_table=11 /product="beta-hydroxydecanoyl thioester dehydrase" /protein_id="NP_460041.1" /db_xref="GeneID:1252585" /translation="MVDKRESYTKEDLLASGRGELFGAKGPQLPAPNMLMMDRVVKMT ETGGNFDKGYVEAELDINPDLWFFGCHFIGDPVMPGCLGLDAMWQLVGFYLGWLGGEG KGRALGVGEVKFTGQVLPTARKVTYRIHFKRIVNRRLIMGLADGEVLVDGRLIYTAHD LKVGLFQDTSAF" misc_feature complement(1157899..1158414) /gene="fabA" /locus_tag="STM1067" /note="bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase; Region: PRK05174" /db_xref="CDD:179953" misc_feature complement(order(1158094..1158105,1158136..1158141, 1158148..1158153,1158160..1158162,1158328..1158336)) /gene="fabA" /locus_tag="STM1067" /note="active site 1 [active]" /db_xref="CDD:238614" misc_feature complement(order(1158064..1158069,1158073..1158075, 1158079..1158105,1158160..1158162,1158172..1158174, 1158325..1158327,1158331..1158333)) /gene="fabA" /locus_tag="STM1067" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238614" misc_feature complement(order(1158064..1158075,1158175..1158183)) /gene="fabA" /locus_tag="STM1067" /note="active site 2 [active]" /db_xref="CDD:238614" regulatory complement(1158425..1158430) /regulatory_class="ribosome_binding_site" /gene="fabA" /locus_tag="STM1067" /note="putative RBS for fabA; RegulonDB:STMS1H001344" regulatory complement(1158455..1158463) /regulatory_class="minus_10_signal" /gene="fabA" /locus_tag="STM1067" /note="putative -10_signal for fabA; RegulonDB:STMLTH004466" protein_bind complement(1158468..1158486) /note="putative binding site for FadR, RegulonDB: STMS1H000179" /bound_moiety="FadR" regulatory complement(1158471..1158479) /regulatory_class="minus_35_signal" /gene="fabA" /locus_tag="STM1067" /note="putative -35_signal for fabA; RegulonDB:STMLTH004466" gene complement(1158483..1160243) /gene="lonH" /locus_tag="STM1068" /db_xref="GeneID:1252586" CDS complement(1158483..1160243) /gene="lonH" /locus_tag="STM1068" /EC_number="3.4.21.-" /note="similar to E. coli putative ATP-dependent protease (AAC74041.1); Blastp hit to AAC74041.1 (586 aa), 85% identity in aa 1 - 586" /codon_start=1 /transl_table=11 /product="putative protease" /protein_id="NP_460042.1" /db_xref="GeneID:1252586" /translation="MTITKLAWRDLVPDSESYQEIFAQPHATDENDTLLSDTQPRLQF ALEQLIQPWASSSFMLTKAPEEQEYLTLLSDAVRALQTDAGQLTGGHYDVSGHTVHYR AAQNAQDNFATVTQVVSADWVEAEQLFGCLRQYNGDITLQPGLVHQANGGVLIISLRT LLAQPLLWMRLKAIVSRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE MEPELAEQAIYSEFEDNLQIADAEAMTLWCQWVTRIALRDNLPPPAPDAWPVLIREAV RYTGEQDTLPLCPLWIARQFKEASPLCEGDTCGAEALSLMLARREWREGFLAERMQDE ILQEQILIETEGERVGQINALSVIEFPGHPRAFGEPSRISCVVHIGDGEFNDIERKAE LGGNIHAKGMMIMQAFLMSELQLEQQIPFSASLTFEQSYSEVDGDSASMAELCALISA LANVPVNQNIAITGSVDQFGRAQPVGGLNEKIEGFFAICEQRELNGKQGVIIPAANVR HLSLKSELLQAVKEEKFTIWAVDDVTDALPLLLNLVWDGEGQTTLMQTIQERIAQATQ QEGRHRFPWPLRWLNAFIPN" misc_feature complement(1158555..>1159865) /gene="lonH" /locus_tag="STM1068" /note="Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]; Region: LonB; COG1067" /db_xref="CDD:440686" gene 1160409..1160881 /gene="ycbG" /locus_tag="STM1069" /db_xref="GeneID:1252587" regulatory 1160409..1160414 /regulatory_class="ribosome_binding_site" /gene="ycbG" /locus_tag="STM1069" /note="putative RBS for ycbG; RegulonDB:STMS1H001345" CDS 1160429..1160881 /gene="ycbG" /locus_tag="STM1069" /note="similar to E. coli putative dehydrogenase (AAC74042.1); Blastp hit to AAC74042.1 (150 aa), 89% identity in aa 1 - 150" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460043.1" /db_xref="GeneID:1252587" /translation="MKYQQLENLESGWKWKYLVKKHREGELITRYVEASAAQEAVNLL LALENEPVRVNVWIDRHMNPALLNRMKQTIRARRKRHFNAEHQHTRKKSIDLEFMVWQ RLAGLAQRRGKTLSETIVQLIEDAEHKEKYATQMTTLKQDLQALLGKK" misc_feature 1160429..1160878 /gene="ycbG" /locus_tag="STM1069" /note="macrodomain Ter protein MatP; Region: PRK05097" /db_xref="CDD:235344" gene complement(1160953..1162133) /gene="ompA" /locus_tag="STM1070" /db_xref="GeneID:1252588" CDS complement(1160953..1162005) /gene="ompA" /locus_tag="STM1070" /note="outer membrane protein a precursor (outer membrane protein 33K) (outermembrane major heat-modifiable protein). (SW:OMPA_SALTY)" /codon_start=1 /transl_table=11 /product="putative membrane component hydrogenase" /protein_id="NP_460044.1" /db_xref="GeneID:1252588" /translation="MKKTAIAIAVALAGFATVAQAAPKDNTWYAGAKLGWSQYHDTGF IHNDGPTHENQLGAGAFGGYQVNPYVGFEMGYDWLGRMPYKGDNINGAYKAQGVQLTA KLGYPITDDLDVYTRLGGMVWRADTKSNVPGGPSTKDHDTGVSPVFAGGIEYAITPEI ATRLEYQWTNNIGDANTIGTRPDNGLLSVGVSYRFGQQEAAPVVAPAPAPAPEVQTKH FTLKSDVLFNFNKSTLKPEGQQALDQLYSQLSNLDPKDGSVVVLGFTDRIGSDAYNQG LSEKRAQSVVDYLISKGIPSDKISARGMGESNPVTGNTCDNVKPRAALIDCLAPDRRV EIEVKGVKDVVTQPQA" misc_feature complement(1160956..1162005) /gene="ompA" /locus_tag="STM1070" /note="outer membrane protein A; Reviewed; Region: PRK10808" /db_xref="CDD:236764" regulatory complement(1162012..1162017) /regulatory_class="ribosome_binding_site" /gene="ompA" /locus_tag="STM1070" /note="putative RBS for ompA; RegulonDB:STMS1H001346" regulatory complement(1162106..1162114) /regulatory_class="minus_10_signal" /gene="ompA" /locus_tag="STM1070" /note="putative -10_signal for ompA; RegulonDB:STMLTH004467" regulatory complement(1162125..1162133) /regulatory_class="minus_35_signal" /gene="ompA" /locus_tag="STM1070" /note="putative -35_signal for ompA; RegulonDB:STMLTH004467" protein_bind complement(1162170..1162190) /note="putative binding site for CRP, RegulonDB: STMS1H000091" /bound_moiety="CRP" gene complement(1162362..1163017) /gene="sulA" /locus_tag="STM1071" /db_xref="GeneID:1252589" CDS complement(1162362..1162871) /gene="sulA" /locus_tag="STM1071" /note="inhibitor of cell division and FtsZ ring formation upon DNA damage/inhibition; HslVU and Lon involved in its turnover; cell division inhibitor (SW:SULA_SALTY)" /codon_start=1 /transl_table=11 /product="suppressor of lon" /protein_id="NP_460045.1" /db_xref="GeneID:1252589" /translation="MYTSGYANRSSSFPTTTHNAARTATENAAAGLVSEVVYHEDQPM MAQLLLLPLLRQLGQQSRWQLWLTPQQKLSREWVQSSGLPLTKVMQISQLAPRHTLES MIRALRTGNYSVVIGWMTEELTEEEHASLVEAAKVGNAVGFIMRPVRAHALPRRQHSG LKIHSNLYH" misc_feature complement(1162365..1162868) /gene="sulA" /locus_tag="STM1071" /note="cell division inhibitor SulA; Region: sula; TIGR00623" /db_xref="CDD:129710" regulatory complement(1162877..1162882) /regulatory_class="ribosome_binding_site" /gene="sulA" /locus_tag="STM1071" /note="putative RBS for sulA; RegulonDB:STMS1H001347" protein_bind complement(1162890..1162912) /gene="sulA" /locus_tag="STM1071" /note="putative binding site for LexA, RegulonDB: STMS1H000248" /bound_moiety="LexA" regulatory complement(1162990..1162998) /regulatory_class="minus_10_signal" /gene="sulA" /locus_tag="STM1071" /note="putative -10_signal for sulA; RegulonDB:STMLTH004468" regulatory complement(1163009..1163017) /regulatory_class="minus_35_signal" /gene="sulA" /locus_tag="STM1071" /note="putative -35_signal for sulA; RegulonDB:STMLTH004468" gene 1163078..1163693 /gene="yccR" /locus_tag="STM1072" /db_xref="GeneID:1252590" regulatory 1163078..1163083 /regulatory_class="ribosome_binding_site" /gene="yccR" /locus_tag="STM1072" /note="putative RBS for yccR; RegulonDB:STMS1H001348" CDS 1163088..1163693 /gene="yccR" /locus_tag="STM1072" /note="similar to E. coli orf, hypothetical protein (AAC74045.1); Blastp hit to AAC74045.1 (209 aa), 75% identity in aa 1 - 199" /codon_start=1 /transl_table=11 /product="putative DNA transformation protein" /protein_id="NP_460046.1" /db_xref="GeneID:1252590" /translation="MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVA NGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLNYYRVDESLWRDQQQLVRLSKYS LDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG" misc_feature 1163094..1163426 /gene="yccR" /locus_tag="STM1072" /note="Transcriptional regulator of competence genes, TfoX/Sxy family [Transcription]; Region: TfoX; COG3070" /db_xref="CDD:442304" misc_feature 1163439..1163669 /gene="yccR" /locus_tag="STM1072" /note="TfoX C-terminal domain; Region: TfoX_C; pfam04994" /db_xref="CDD:461512" gene complement(1163680..1165833) /gene="yccS" /locus_tag="STM1073" /db_xref="GeneID:1252591" CDS complement(1163680..1165833) /gene="yccS" /locus_tag="STM1073" /note="similar to E. coli orf, hypothetical protein (AAC74046.1); Blastp hit to AAC74046.1 (720 aa), 88% identity in aa 4 - 710" /codon_start=1 /transl_table=11 /product="putative efflux (PET) family transporter" /protein_id="NP_460047.1" /db_xref="GeneID:1252591" /translation="MLSPLIRRYTWNSTWLYYIRIFIALCGTTALPWWLGDVKLTIPL TLGMVAAALTDLDDRLAGRLRNLIITLICFFIASASVELLFPWPWLFALGLTLSTSGF ILLGGLGQRYATIAFGALLIAIYTMLGTSLYDHWYQQPLLLLAGAVWYNLLTLTGHLL FPIRPLQDNLARSYEQLAHYLELKSRLFDPDIEDESQAPLYDLALANGQLMATLNQTK VSLLTRLRGDRGQRGTRRTLHYYFVAQDIHERASSSHIQYQTLRDYFRHSDVMFRFQR LMSMQAQACTQLARCILLRTPYQHDPRFERVFTHIDAALERMRASGASLELLNTLGFL LTNLRAIDAQLATIESEQAQAMPRNESENQLADDSLHGFSDIWLRLSRNFTPESALFR HAVRMSLVLCIGYALIQITGMRHGYWILLTSLFVCQPNYNATRHRLALRIIGTLVGVA IGLPILWFVPSLEGQLVLLVITGVLFFAFRNVQYAHATMFITLLVLLCFNLLGEGFEV ALPRVVDTLIGCAIAWAAVSFIWPDWRFRNLPRVLQRATDANCRYLDAILEQYHQGRD NRLAYRIARRDAHNRDAELASVVSNMSSEPDVTAETREAAFRLLCLNHTFTSYISALG AHREKLSNPDVLGLLDDAVCYVDDALHHQPEDEQRVHQALEGLKQRVQSLETRPDSKE PLVVQQIGLLIALLPEIGRLQRQISPPISTLITQP" misc_feature complement(1163716..1165812) /gene="yccS" /locus_tag="STM1073" /note="TIGR01666 family membrane protein; Region: YCCS" /db_xref="CDD:130727" gene complement(1165852..1166318) /gene="yccF" /locus_tag="STM1074" /db_xref="GeneID:1252592" CDS complement(1165852..1166298) /gene="yccF" /locus_tag="STM1074" /note="similar to E. coli orf, hypothetical protein (AAC74047.1); Blastp hit to AAC74047.1 (148 aa), 92% identity in aa 1 - 148" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460048.1" /db_xref="GeneID:1252592" /translation="MRTVLNILNFVLGGFATTLAWLLATLVSIVLIFTLPLTRSCWEI TKLSLFPYGNEAIHVDELNPAAKSVLMNTGGTLLNIFWLLFFGWWLCLMHIASGIAQC VTIIGIPVGIANFKIAAIALWPVGRRVVSVETARAAREANARRRFE" misc_feature complement(1165897..1166298) /gene="yccF" /locus_tag="STM1074" /note="YccF domain-containing protein; Region: PRK11770" /db_xref="CDD:236975" regulatory complement(1166313..1166318) /regulatory_class="ribosome_binding_site" /gene="yccF" /locus_tag="STM1074" /note="putative RBS for yccF; RegulonDB:STMS1H001349" gene 1166406..1168476 /gene="helD" /locus_tag="STM1075" /db_xref="GeneID:1252593" regulatory 1166406..1166411 /regulatory_class="ribosome_binding_site" /gene="helD" /locus_tag="STM1075" /note="putative RBS for helD; RegulonDB:STMS1H001350" CDS 1166422..1168476 /gene="helD" /locus_tag="STM1075" /EC_number="3.6.1.-" /note="similar to E. coli DNA helicase IV (AAC74048.1); Blastp hit to AAC74048.1 (684 aa), 83% identity in aa 1 - 684" /codon_start=1 /transl_table=11 /product="DNA helicase IV" /protein_id="NP_460049.1" /db_xref="GeneID:1252593" /translation="MELKATSLGKRLAQHPYDRAEILNAGVKVSGDRHEYLIPFNQLL AIHCKRGLVWGELEFVLPEDKVVRLHGTEWSETQQFHRYLDAHWRRWSQEMSDVAAQA LQEQWARISERTGGNQWLTRERVRGLEHEIRQTFAALPLPVSRLEEFAHCREIWRKCL AWLQDSEGSRQQHNQAYADAMLEAHADFFTQIESSPLNPSQARAVVNGESSLLVLAGA GSGKTSVLVARAGWLLARGQADAGQILLLAFGRKAAEEMDERIRERLHTEEITARTFH SLALYIIQQGSKKAPVVSKLESDATARHQLFLRTWRQQCSEKKAQAKGWRQWLEEEMQ WVVPEGNFWDDETLQRRLAPRLDRWVSLMRMHGGAQAEMIAGAPEECRELFGKRIKLM APLLKAWKSALKAENAVDFSGLIHQAMVILEKGRFISPWKHILVDEFQDISPQRAALL EALRKQNSQTTLFAVGDDWQAIYRFSGAQLSLTTAFHQTFGEGEHCHLDTTYRFNSRI GDIANRFVQQNPHQLKKPLNSLTPGDKKAVTLLDESQLDALLDKLSGYAKEDERILVL ARYHHLKPASLQKAATRWPKLQIDFMTIHASKGQQADYVILVGLQEGNDGFPAPARES IMESALLPQVEDFPDAEERRLLYVALTRARARVWLLFNKDNPSRFVEALKQLDVPVAR KP" misc_feature 1166422..1168473 /gene="helD" /locus_tag="STM1075" /note="DNA helicase IV; Provisional; Region: helD; PRK11054" /db_xref="CDD:182930" gene complement(1168512..1168983) /gene="mgsA" /locus_tag="STM1076" /db_xref="GeneID:1252594" CDS complement(1168512..1168970) /gene="mgsA" /locus_tag="STM1076" /EC_number="4.2.3.3" /note="similar to E. coli methylglyoxal synthase (AAC74049.1); Blastp hit to AAC74049.1 (155 aa), 94% identity in aa 4 - 155" /codon_start=1 /transl_table=11 /product="methylglyoxal synthase" /protein_id="NP_460050.1" /db_xref="GeneID:1252594" /translation="MELTTRTLPTRKHIALVAHDHCKQMLMNWVERHQPLLEKHVLYA TGTTGNLIQRATGMDVNAMLSGPMGGDQQVGALISEGKIDVLIFFWDPLNAVPHDPDV KALLRLATVWNIPVATNVSTADFIIQSPHFNDAVDILIPDYARYLAERLK" misc_feature complement(1168524..1168949) /gene="mgsA" /locus_tag="STM1076" /note="methylglyoxal synthase; Validated; Region: mgsA; PRK05234" /db_xref="CDD:179969" misc_feature complement(order(1168677..1168679,1168758..1168760, 1168773..1168778,1168827..1168832,1168836..1168838, 1168902..1168904,1168920..1168922)) /gene="mgsA" /locus_tag="STM1076" /note="active site" /db_xref="CDD:238710" misc_feature complement(order(1168596..1168598,1168605..1168616, 1168623..1168640,1168644..1168652,1168659..1168661, 1168668..1168670,1168695..1168697,1168734..1168736, 1168752..1168757,1168767..1168772,1168776..1168781, 1168830..1168832,1168911..1168913)) /gene="mgsA" /locus_tag="STM1076" /note="dimer interfaces [polypeptide binding]; other site" /db_xref="CDD:238710" misc_feature complement(order(1168677..1168679,1168758..1168760)) /gene="mgsA" /locus_tag="STM1076" /note="catalytic residues [active]" /db_xref="CDD:238710" regulatory complement(1168978..1168983) /regulatory_class="ribosome_binding_site" /gene="mgsA" /locus_tag="STM1076" /note="putative RBS for mgsA; RegulonDB:STMS1H001351" gene complement(1169065..1169739) /gene="yccT" /locus_tag="STM1077" /db_xref="GeneID:1252595" CDS complement(1169065..1169727) /gene="yccT" /locus_tag="STM1077" /note="similar to E. coli orf, hypothetical protein (AAC74050.1); Blastp hit to AAC74050.1 (220 aa), 84% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460051.1" /db_xref="GeneID:1252595" /translation="MKTGALATFLALCLPVTVFATTLRLSNEVDLLVLDGKKVSSSLL RGAESIELENGPHQLVFRVEKTIRLPGNEERLYISPPLVISFDTQLISQVNFQLPRLE NEREASHFNAAPRLALLDGDAMPIPVKLDILAITSTAKVVDYEIETERYNKSAKRASL PQFATMMADDSTLLSDVSELDTVPPQSQTLTEQRLKYWFRLADPQTRHHFLQWAEKQP PS" misc_feature complement(1169068..1169727) /gene="yccT" /locus_tag="STM1077" /note="DUF2057 family protein; Region: PRK03641" /db_xref="CDD:179619" regulatory complement(1169734..1169739) /regulatory_class="ribosome_binding_site" /gene="yccT" /locus_tag="STM1077" /note="putative RBS for yccT; RegulonDB:STMS1H001352" gene 1169888..1170314 /locus_tag="STM1078" /db_xref="GeneID:1252596" regulatory 1169888..1169893 /regulatory_class="ribosome_binding_site" /locus_tag="STM1078" /note="putative RBS for STM1078; RegulonDB:STMS1H001353" CDS 1169898..1170314 /locus_tag="STM1078" /note="similar to E. coli orf, hypothetical protein (AAC74051.1); Blastp hit to AAC74051.1 (164 aa), 91% identity in aa 27 - 164" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460052.1" /db_xref="GeneID:1252596" /translation="MMKETDIADVLTSTRTIALVGASDKPDRPSYRVMKYLLEQGYHV IPVAPKVAGKTLLGQQGYATLADIPEKVDMVDVFRNSEAAWGVAQEAIAIGAKTLWLQ LGVINEQAAVLARDAGMTVVMDRCPAIEIPRLGLAK" misc_feature 1169898..1170311 /locus_tag="STM1078" /note="Predicted CoA-binding protein [General function prediction only]; Region: YccU; COG1832" /db_xref="CDD:441437" gene complement(1170359..1170685) /gene="yccV" /locus_tag="STM1079" /db_xref="GeneID:1252597" CDS complement(1170359..1170676) /gene="yccV" /locus_tag="STM1079" /note="similar to E. coli orf, hypothetical protein (AAC74052.1); Blastp hit to AAC74052.1 (122 aa), 92% identity in aa 18 - 122" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460053.1" /db_xref="GeneID:1252597" /translation="MIASKFGIGQQVRHSLLGYLGVVVDIDPEYSLDEPSPDELAVND ELRAAPWYHVVMEDDDGQPVHTYLAEAQLRSEMRDEHPEQPSMDELARTIRKQLQAPR LRN" misc_feature complement(1170362..1170676) /gene="yccV" /locus_tag="STM1079" /note="heat shock protein HspQ; Provisional; Region: PRK14129" /db_xref="CDD:184526" regulatory complement(1170680..1170685) /regulatory_class="ribosome_binding_site" /gene="yccV" /locus_tag="STM1079" /note="putative RBS for yccV; RegulonDB:STMS1H001354" gene complement(1170734..1171958) /gene="yccW" /locus_tag="STM1080" /db_xref="GeneID:1252598" CDS complement(1170734..1171945) /gene="yccW" /locus_tag="STM1080" /note="similar to E. coli putative oxidoreductase (AAC74053.1); Blastp hit to AAC74053.1 (367 aa), 93% identity in aa 1 - 367" /codon_start=1 /transl_table=11 /product="putative SAM-dependent methyltransferase" /protein_id="NP_460054.1" /db_xref="GeneID:1252598" /translation="MTESTFPQYPRLVLSKGREKSLLRRHPWVFSGAVSRLEGKANLG ETIDIVDHQGKWLARGAWSPASQIRARVWTFDKAESIDIAFFTRRLRQAQQWRDWLAK KDGLDSYRLIAGESDGLPGVTIDRFGHFLVLQLLSAGAEYQRAALISALQTCYPDCAI YDRSDVAVRKKEGMALTQGPVTGELPPALLPIEEHGMKLLVDIQGGHKTGYYLDQRDS RLATRRYVENQRVLNCFSYTGGFAVSALMGGCRQVVSVDTSQDALDIARQNVELNQLD LSKAEFVRDDVFKLLRAYREHGEKFDVIIMDPPKFVENKSQLMGACRGYKDINMLAIQ LLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQAADHPVIATYPEG LYLKGFACRVM" misc_feature complement(1170737..1171924) /gene="yccW" /locus_tag="STM1080" /note="23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI; Region: PRK15128" /db_xref="CDD:185082" regulatory complement(1171953..1171958) /regulatory_class="ribosome_binding_site" /gene="yccW" /locus_tag="STM1080" /note="putative RBS for yccW; RegulonDB:STMS1H001355" gene 1172149..1172708 /locus_tag="STM1081" /db_xref="GeneID:1252599" regulatory 1172149..1172154 /regulatory_class="ribosome_binding_site" /locus_tag="STM1081" /note="putative RBS for STM1081; RegulonDB:STMS1H001356" CDS 1172160..1172708 /locus_tag="STM1081" /note="similar to E. coli orf, hypothetical protein (AAC73646.1); Blastp hit to AAC73646.1 (183 aa), 59% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_460055.1" /db_xref="GeneID:1252599" /translation="MKTVFSLTAAAMMALSGGVSAASAFSLSSADIPADFRLTQQHVF KGFGCSGENISPQLSWRNPPAGTKSYAITVFDPDAPTGSGWWHWTMVNIPAQIHDLPT GADKKTLPAGVVQGRNDFGYAGFGGACPPPSDKPHRYQFTVWALNTATLPLDSESSGA LVGFMLNAHVIAKAKFTATYGR" misc_feature 1172160..1172705 /locus_tag="STM1081" /note="PhosphatidylEthanolamine-Binding Protein (PEBP) domain; Region: PEBP; cl00227" /db_xref="CDD:469671" misc_feature order(1172385..1172390,1172412..1172414,1172418..1172420, 1172538..1172552,1172562..1172564,1172568..1172570, 1172574..1172576) /locus_tag="STM1081" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176643" gene 1172728..1173513 /locus_tag="STM1082" /db_xref="GeneID:1252600" regulatory 1172728..1172733 /regulatory_class="ribosome_binding_site" /locus_tag="STM1082" /note="putative RBS for STM1082; RegulonDB:STMS1H001357" CDS 1172734..1173513 /locus_tag="STM1082" /note="similar to E. coli putative ARAC-type regulatory protein (AAC73647.1); Blastp hit to AAC73647.1 (265 aa), 33% identity in aa 8 - 260" /codon_start=1 /transl_table=11 /product="AraC family bacterial regulatory protein" /protein_id="NP_460056.1" /db_xref="GeneID:1252600" /translation="MHIRHQDLTTAEVRSSHLHRLHRVTLFSAAICHITQGSKVIIQD DSRLVAGPGELIIIPANTPLEIINQPAQNGFRSDLLLLSPEIIARFKTMYVQDYPPAN LTSLCTPMSRSLTFMWENVLDAVRQGLPVGLQEHQAMGLLLALLHDGAAGPLLIERRY TLTEQVRQLIMLSPAKLWTAQEIARRLAMGTSTLRRRLQRESQSYRQIVEEVRMSCAL SQLQSTTLPIGEIALRCGYLSGSRFTARFRQHYGCLPSQVR" misc_feature 1173265..1173510 /locus_tag="STM1082" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:197666" gene 1173549..1173843 /gene="yccX" /locus_tag="STM1083" /db_xref="GeneID:1252601" regulatory 1173549..1173554 /regulatory_class="ribosome_binding_site" /gene="yccX" /locus_tag="STM1083" /note="putative RBS for yccX; RegulonDB:STMS1H001358" CDS 1173562..1173843 /gene="yccX" /locus_tag="STM1083" /EC_number="3.6.1.7" /note="similar to E. coli orf, hypothetical protein (AAC74054.1); Blastp hit to AAC74054.1 (92 aa), 78% identity in aa 1 - 92" /codon_start=1 /transl_table=11 /product="putative phosphohydrolase" /protein_id="NP_460057.1" /db_xref="GeneID:1252601" /translation="MSNVCIIAWVYGRVQGVGFRYTTQHEAQRLGLTGYAKNMDDGSV EVVACGDAAQVEKLIKWLKEGGPRSARVDKILTEPHSPRETLTGFSIRY" misc_feature 1173562..1173837 /gene="yccX" /locus_tag="STM1083" /note="acylphosphatase; Provisional; Region: PRK14426" /db_xref="CDD:184675" gene complement(1173840..1174179) /gene="yccK" /locus_tag="STM1084" /db_xref="GeneID:1252602" CDS complement(1173840..1174169) /gene="yccK" /locus_tag="STM1084" /EC_number="1.8.99.5" /note="similar to E. coli putative sulfite reductase (AAC74055.1); Blastp hit to AAC74055.1 (128 aa), 90% identity in aa 20 - 128" /codon_start=1 /transl_table=11 /product="putative sulfite reductase, gamma subunit" /protein_id="NP_460058.1" /db_xref="GeneID:1252602" /translation="MLIFEGKEISTDSEGYLKETTQWSEALAVAIAANEGIELSAEHW EVVRFVREFYLEFNTSPAIRMLVKAMANKFGEEKGNSRYLYRLFPKGPAKQATKIAGL PKPVKCI" misc_feature complement(1173843..1174169) /gene="yccK" /locus_tag="STM1084" /note="sulfurtransferase TusE; Region: PRK11508" /db_xref="CDD:183167" regulatory complement(1174174..1174179) /regulatory_class="ribosome_binding_site" /gene="yccK" /locus_tag="STM1084" /note="putative RBS for yccK; RegulonDB:STMS1H001359" gene complement(1174256..1174915) /gene="yccA" /locus_tag="STM1085" /db_xref="GeneID:1252603" CDS complement(1174256..1174915) /gene="yccA" /locus_tag="STM1085" /note="similar to E. coli putative carrier/transport protein (AAC74056.1); Blastp hit to AAC74056.1 (219 aa), 94% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="putative TEGT family carrier" /protein_id="NP_460059.1" /db_xref="GeneID:1252603" /translation="MDRIITSSRDRSSLLSTHKVLRNTYFLLSLTLALSAITATASTV LMLPSPGLILTLVGMYGLMFLTYKTANKPVGILSAFAFTGFLGYILGPILNAYLSAGM GDVIGLALGGTALVFFCCSAYVLTTRKDMSFLGGMLMAGIVVVLIGMVANIFLQLPAL HLAISAVFILISSGAILYETSNIIHGGETNYIRATVSLYVSLYNIFVSLLSILGFASR D" misc_feature complement(1174259..1174915) /gene="yccA" /locus_tag="STM1085" /note="FtsH protease modulator YccA; Region: PRK10447" /db_xref="CDD:182469" gene 1175309..1175393 /gene="serT" /locus_tag="STM1086" /db_xref="GeneID:1252604" tRNA 1175309..1175393 /gene="serT" /locus_tag="STM1086" /product="tRNA-Ser" /db_xref="GeneID:1252604" gene complement(1175536..1176224) /gene="pipA" /locus_tag="STM1087" /db_xref="GeneID:1252605" CDS complement(1175536..1176216) /gene="pipA" /locus_tag="STM1087" /codon_start=1 /transl_table=11 /product="Pathogenicity island encoded protein: SPI5" /protein_id="NP_460060.1" /db_xref="GeneID:1252605" /translation="MLPVTYRLIPQSGVSTYRLNTADTPVFPDIPEHAPNPSRLRLAH DSLAINSEFRLEPECVVEYLISGAGGIDPDTEIDDDTYDECYDELSSVLQNAYTQSET FRRLMNYAYEKELHDVEQRWLLGAGEAFETTVAQEHFKLSEGRKVICLNLDDSDDSYT EHYESNEGRQLFDTKRSFIHEVVHALTHLQDKEENHPRGPVVEYTNIILKEMGHPSPP RMVYIFNK" misc_feature complement(1175551..1176141) /gene="pipA" /locus_tag="STM1087" /note="PipA protein; Region: PipA; pfam07108" /db_xref="CDD:369211" regulatory complement(1176219..1176224) /regulatory_class="ribosome_binding_site" /gene="pipA" /locus_tag="STM1087" /note="putative RBS for pipA; RegulonDB:STMS1H001360" gene complement(1176438..1177320) /gene="pipB" /locus_tag="STM1088" /db_xref="GeneID:1252606" CDS complement(1176438..1177313) /gene="pipB" /locus_tag="STM1088" /codon_start=1 /transl_table=11 /product="Pathogenicity island encoded protein: SPI5" /protein_id="NP_460061.1" /db_xref="GeneID:1252606" /translation="MPITNASPENILRYLHAAGTGTKEAMKSATSPRGILEWFVNFFT CGGVRRSNERWFREVIGKLTTSLLYVNKNAFFDGNKIFLEDVNGCTICLSCGAASENT DPMVIIEVNKNGKTVTDKVDSERFWNVCRMLKLMSKHNIQQPDSLITEDGFLNLRGVN LAHKDFQGEDLSKIDASNADFRETTLSNVNLVGANLCCANLHAVNLMGSNMTKANLTH ADLTCANMSGVNLTAAILFGSDLTDTKLNGAKLDKIALTLAKALTGADLTGSQHTPTP LPDYNDRTLFPHPIF" misc_feature complement(1176441..1177313) /gene="pipB" /locus_tag="STM1088" /note="type III secretion system effector PipB; Region: PRK15197" /db_xref="CDD:185119" regulatory complement(1177315..1177320) /regulatory_class="ribosome_binding_site" /gene="pipB" /locus_tag="STM1088" /note="putative RBS for pipB; RegulonDB:STMS1H001361" gene 1177531..1177851 /locus_tag="STM1089" /db_xref="GeneID:1252607" CDS 1177531..1177851 /locus_tag="STM1089" /codon_start=1 /transl_table=11 /product="Pathogenicity island encoded protein: SPI5" /protein_id="NP_460062.1" /db_xref="GeneID:1252607" /translation="MTSFISSIAYASSSLNKQLSLLSENLLKEKIISTNIFCSISTYT RINARRWRKNLMSRNTYTLKMLPQTEQNERDERLPLTFPPKILVLSLVKGIRIAFYLI KKVC" gene complement(1177861..1178208) /gene="pipC" /locus_tag="STM1090" /db_xref="GeneID:1252608" CDS complement(1177861..1178202) /gene="pipC" /locus_tag="STM1090" /note="invasion gene E protein (gi|2582386)" /codon_start=1 /transl_table=11 /product="Pathogenicity island encoded protein: SPI5" /protein_id="NP_460063.1" /db_xref="GeneID:1252608" /translation="MESLLNRLYDALGLDAPEDEPLLIIDDGIQVYFNESDHTLEMCC PFMPLPDDILTLQHFLRLNYTSAVTIGADADNTALVALYRLPQTSTEEEALTGFELFI SNVKQLKEHYA" misc_feature complement(1177864..1178202) /gene="pipC" /locus_tag="STM1090" /note="type III secretion system chaperone; Region: PRK15202" /db_xref="CDD:237922" regulatory complement(1178203..1178208) /regulatory_class="ribosome_binding_site" /gene="pipC" /locus_tag="STM1090" /note="similar to ipgE of Shigellaputative RBS for pipC; RegulonDB:STMS1H001362" gene complement(1178219..1179912) /gene="sopB" /locus_tag="STM1091" /db_xref="GeneID:1252609" CDS complement(1178219..1179904) /gene="sopB" /locus_tag="STM1091" /note="invasion gene D protein (gi|2582385)" /codon_start=1 /transl_table=11 /product="Pathogenicity island encoded protein: SPI5" /protein_id="NP_460064.1" /db_xref="GeneID:1252609" /translation="MQIQSFYHSASLKTQEAFKSLQKTLYNGMQILSGQGKAPAKAPD ARPEIIVLREPGATWGNYLQHQKASNHSLHNLYNLQRDLLTVAATVLGKQDPVLTSMA NQMELAKVKADRPATKQEEAAAKALKKNLIELIAARTQQQDGLPAKEAHRFAAVAFRD AQVKQLNNQPWQTIKNTLTHNGHHYTNTQLPAAEMKIGAKDIFPSAYEGKGVCSWDTK NIHHANNLWMSTVSVHEDGKDKTLFCGIRHGVLSPYHEKDPLLRHVGAENKAKEVLTA ALFSKPELLNKALAGEAVSLKLVSVGLLTASNIFGKEGTMVEDQMRAWQSLTQPGKMI HLKIRNKDGDLQTVKIKPDVAAFNVGVNELALKLGFGLKASDSYNAEALHQLLGNDLR PEARPGGWVGEWLAQYPDNYEVVNTLARQIKDIWKNNQHHKDGGEPYKLAQRLAMLAH EIDAVPAWNCKSGKDRTGMMDSEIKREIISLHQTHMLSAPGSLPDSGGQKIFQKVLLN SGNLEIQKQNTGGAGNKVMKNLSPEVLNLSYQKRVGDENIWQSVKGISSLITS" misc_feature complement(1178228..1179904) /gene="sopB" /locus_tag="STM1091" /note="Enterobacterial virulence protein IpgD; Region: IpgD; pfam05925" /db_xref="CDD:283555" regulatory complement(1179907..1179912) /regulatory_class="ribosome_binding_site" /gene="sopB" /locus_tag="STM1091" /note="putative RBS for sopB; RegulonDB:STMS1H001363" gene 1180229..1180406 /gene="orfX" /locus_tag="STM1092" /db_xref="GeneID:1252610" regulatory 1180229..1180234 /regulatory_class="ribosome_binding_site" /gene="orfX" /locus_tag="STM1092" /note="putative RBS for orfX; RegulonDB:STMS1H001364" CDS 1180236..1180406 /gene="orfX" /locus_tag="STM1092" /codon_start=1 /transl_table=11 /product="Pathogenicity island encoded protein: SPI5" /protein_id="NP_460065.1" /db_xref="GeneID:1252610" /translation="MPAKPRTSKTVTKNIRFSYSMLEQIEFALKSEKTRNFSAWVKEA CREKLCNTGHKL" misc_feature 1180296..1180385 /gene="orfX" /locus_tag="STM1092" /note="Domain of unknown function (DUF3950); Region: DUF3950; pfam13132" /db_xref="CDD:404101" gene complement(1180407..1180524) /locus_tag="STM1093" /db_xref="GeneID:1252611" CDS complement(1180407..1180517) /locus_tag="STM1093" /codon_start=1 /transl_table=11 /product="Pathogenicity island encoded protein: SPI5" /protein_id="NP_447525.1" /db_xref="GeneID:1252611" /translation="MTLQANISRETKAAKTQEVYKHVVLFKMAAPSYIRR" regulatory complement(1180519..1180524) /regulatory_class="ribosome_binding_site" /locus_tag="STM1093" /note="putative RBS for STM1093; RegulonDB:STMS1H001365" gene complement(1180626..1182100) /gene="pipD" /locus_tag="STM1094" /db_xref="GeneID:1252612" CDS complement(1180626..1182095) /gene="pipD" /locus_tag="STM1094" /codon_start=1 /transl_table=11 /product="Pathogenicity island encoded protein: SPI5" /protein_id="NP_460067.1" /db_xref="GeneID:1252612" /translation="MKKYLAFAVTLLGMGKVIACTTLLVGNQASADGSFIIARNEDGS ANNAKHKVIHPIAFHQQGEYKAHRNNFSWPLPETAMRYTAIHDFDTNDNAMGEAGFNS AGVGMSATETIYNGRAALAADPYVTKTGITEDAIESVILPVAQSARQGAKLLGDIIEQ KGAGEGFGVAFIDSKEIWYLETGSGHQWLAVRLPADSYFVSANQGRLRHYDPNDNANY MASPTLVSFAKKQGLYDPARGEFDFHQAYSQDNKNDTTYNYPRVWTLQHQFNPHLDTV VSEGETFPVFLTPITKISVAAVKNALRNHYQGTSHDPYASHNPQEPWRPISVFRTQES HILQVRPKLPQAIGNVEYIAYGMPSLSVYLPYYQGMRHYQPGDDKGTDRASNDSTYWT FRTLQTLVMQDYNAFAPDVQHAWKTFEQQTAKQQYKMEQSYLRLYASHPKEAQRLLQN FEDKTMQNAQTLARRLTNNIITTMTYRTDMKYHFSSTQP" misc_feature complement(1180641..1182041) /gene="pipD" /locus_tag="STM1094" /note="Dipeptidase [Amino acid transport and metabolism]; Region: PepD; COG4690" /db_xref="CDD:443725" regulatory complement(1182095..1182100) /regulatory_class="ribosome_binding_site" /gene="pipD" /locus_tag="STM1094" /note="putative RBS for pipD; RegulonDB:STMS1H001366" gene complement(1182268..1183651) /gene="copS" /locus_tag="STM1095" /db_xref="GeneID:1252613" CDS complement(1182268..1183632) /gene="copS" /locus_tag="STM1095" /EC_number="2.7.3.-" /note="Pathogenicity island encoded protein: SPI5; similar to E. coli putative 2-component sensor protein (AAC75034.1); Blastp hit to AAC75034.1 (452 aa), 54% identity in aa 1 - 449" /codon_start=1 /transl_table=11 /product="Copper resistance; histidine kinase" /protein_id="NP_447527.1" /db_xref="GeneID:1252613" /translation="MVKLSMTLRLTISFIAILILACTGISWTLYNALSKELTYRDDMT LINRAAQMQQLLLDGARPENLPLYFNRMVDTKQDILLIHSATGHNVAINHSGIPDQRF NEIPLTKNITRETLFRQAVQGTELTAVRVSARSGDDPLTLTIARLATERRQMLAQYRR NSLLMSLIAILVCSALSPLVIRNGLRAITSLSRLTAATDSGTLRQPLAEQALPVELRP LGQALNTMRQKLSDDFERLNQFADDLAHELRTPVNILLGKNQVMLSQERSAEEYQQAL VDNIEELEGLSRLTENILFLARAEHQNIAVKKQPVSLNALVENMLDYLSPLAEEKRIC FINQCQGTVWADEILLQRVLSNLLTNAIRYSDENAVIRIESAYDDNVAEIRVANPGSH PADADKLFRRFWRGDNARHTAGFGLGLSLVNAIALLHGGSASYRYADEHNIFSVRLPD SGDS" misc_feature complement(1182286..1183626) /gene="copS" /locus_tag="STM1095" /note="heavy metal sensor kinase; Region: cztS_silS_copS; TIGR01386" /db_xref="CDD:273593" gene complement(1183625..1184377) /gene="copR" /locus_tag="STM1096" /db_xref="GeneID:1252614" CDS complement(1183625..1184371) /gene="copR" /locus_tag="STM1096" /note="Pathogenicity island encoded protein: SPI5; similar to E. coli putative 2-component transcriptional regulator (AAC75035.1); Blastp hit to AAC75035.1 (239 aa), 74% identity in aa 6 - 236" /codon_start=1 /transl_table=11 /product="Copper resistance transcriptional regulatory protein" /protein_id="NP_460069.3" /db_xref="GeneID:1252614" /translation="MTIMSSCWRFTDSLTSLWHTALMKILLIEDNQKTIEWVRQGLTE AGYVVDYACDGRDGLHLALQEHYSLIILDIMLPGLDGWQVLRALRTAHQSPVICLTAR DSVEDRVKGLEAGANDYLVKPFSFAELLARVRAQLRQHVPAFTRLTINGLDMDATKQS VSRNGKPISLTRKEFLLLWLLASRAGEIVPRTAIASEVWGINFDSETNTVDVAIRRLR AKVDDPFEKKLIMTVRGMGYRLQAETSQNG" misc_feature complement(1183637..1184305) /gene="copR" /locus_tag="STM1096" /note="DNA-binding response regulator HprR; Region: PRK11517" /db_xref="CDD:183172" regulatory complement(1183646..1183651) /regulatory_class="ribosome_binding_site" /gene="copR" /locus_tag="STM1096" /note="putative RBS for copS; RegulonDB:STMS1H001367" regulatory complement(1184372..1184377) /regulatory_class="ribosome_binding_site" /gene="copR" /locus_tag="STM1096" /note="putative RBS for copR; RegulonDB:STMS1H001368" gene 1184429..1184851 /locus_tag="STM1097" /db_xref="GeneID:1252615" regulatory 1184429..1184434 /regulatory_class="ribosome_binding_site" /locus_tag="STM1097" /note="putative RBS for STM1097; RegulonDB:STMS1H001369" CDS 1184441..1184851 /locus_tag="STM1097" /note="similar to E. coli orf, hypothetical protein (AAC75036.1); Blastp hit to AAC75036.1 (137 aa), 68% identity in aa 2 - 137" /codon_start=1 /transl_table=11 /product="putative periplasmic or exported protein" /protein_id="NP_460070.1" /db_xref="GeneID:1252615" /translation="MKRYILATVIASLVAAPAMALAAGNNILSVHILDQQTGKPAPGV EVVLEQKKDNGWTQLNTGHTDQDGRIKALWPEKAAAPGDYRVIFKTGQYFESKKLDTF FPEIPVEFHISKTNEHYHVPLLLSQYGYSTYRGS" misc_feature 1184441..1184848 /locus_tag="STM1097" /note="hydroxyisourate hydrolase; Provisional; Region: PRK15036" /db_xref="CDD:184996" misc_feature order(1184531..1184533,1184537..1184539,1184645..1184647, 1184798..1184800,1184804..1184806,1184810..1184812, 1184837..1184839) /locus_tag="STM1097" /note="active site" /db_xref="CDD:100114" misc_feature order(1184543..1184554,1184744..1184749,1184753..1184755, 1184765..1184773,1184816..1184818,1184822..1184842) /locus_tag="STM1097" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:100114" gene complement(1185184..1185708) /gene="hpaC" /locus_tag="STM1098" /db_xref="GeneID:1252616" CDS complement(1185184..1185696) /gene="hpaC" /locus_tag="STM1098" /EC_number="1.14.14.9" /note="similar to E. coli orf, hypothetical protein (AAC74092.1); Blastp hit to AAC74092.1 (152 aa), 44% identity in aa 1 - 145" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism protein" /protein_id="NP_460071.1" /db_xref="GeneID:1252616" /translation="MQVDEQRLRFRDAMASLAAAVNIVTTAGHAGRCGITATAVCSVT DTPPSVMVCINANSAMNPVFQGNGRLCINVLNHEQELMARHFAGMTGMAMEERFHQPC WQNGPLGQPVLNGALAGLEGEISEVQTIGTHLVYLVAIKNIILSQDGHGLIYFKRRFH PVRLEMEAPV" misc_feature complement(1185187..1185696) /gene="hpaC" /locus_tag="STM1098" /note="4-hydroxyphenylacetate 3-monooxygenase reductase subunit; Provisional; Region: hpaC; PRK15486" /db_xref="CDD:185383" regulatory complement(1185703..1185708) /regulatory_class="ribosome_binding_site" /gene="hpaC" /locus_tag="STM1098" /note="putative RBS for hpaC; RegulonDB:STMS1H001370" gene complement(1185714..1187283) /gene="hpaB" /locus_tag="STM1099" /db_xref="GeneID:1252617" CDS complement(1185714..1187276) /gene="hpaB" /locus_tag="STM1099" /EC_number="1.14.14.9" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism protein" /protein_id="NP_460072.1" /db_xref="GeneID:1252617" /translation="MKPEDFRTDNKRPLTGEEYLKSLQDGREIYIYGERVKDVTTHPA FRNAAASVAQLYDALHKPSMQDTLCWNTDTGSGGYTHKFFRVAKSADDLRQQRDAIAE WSRLSYGWMGRTPDYKAAFGCALGANPAFYGQFEQNARNWYTRIQETGLYFNHAIVNP PIDRHKPADEVKDVYIKLEKETDAGIIVSGAKVVATNSALTHYNMIGFGSAQVMGENP DFALMFVAPMDAEGVKLISRASYEMVAGATGSPFDYPLSSRFDENDAILVMDKVLIPW ENVLIYRDFDRCRRWTMEGGFARMYPLQACVRLAVKLDFITALLKKSLECTGTVEFRG VQADLGEVVAWRNMFWALSDSMCSEATPWVNGAWLPDHAALQTYRVMAPMAYAKIKNI IERNVTSGLIYLPSSARDLNNPQIDQYLAKYVRGSNGMDHVERIKILKLMWDAIGSEF GGRHELYEINYSGSQDEIRLQCLRQAQSSGNMDKMMAMVDRCLSEYDQNGWTVSHLHN NDDINQLDKLLK" misc_feature complement(1185717..1187273) /gene="hpaB" /locus_tag="STM1099" /note="4-hydroxyphenylacetate 3-monooxygenase, oxygenase component; Region: HpaB-1; cl42851" /db_xref="CDD:456196" regulatory complement(1187278..1187283) /regulatory_class="ribosome_binding_site" /gene="hpaB" /locus_tag="STM1099" /note="putative RBS for hpaB; RegulonDB:STMS1H001371" gene complement(1187494..1187938) /gene="hpaR" /locus_tag="STM1100" /db_xref="GeneID:1252618" CDS complement(1187494..1187934) /gene="hpaR" /locus_tag="STM1100" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism protein" /protein_id="NP_460073.1" /db_xref="GeneID:1252618" /translation="MHDSLTIALLQAREAAMTYFRPIVKSHNLTDQQWRIVRILADSP SMDFHELAFRTCILRPSLTGILTRMERDGLVLRLKPVNDQRKLYVMLTEQGQTLYARA RSQVEEAYRKIEADFTPEKTQQLMLLLDDLIALGRQHPDSEAEA" misc_feature complement(1187572..1187925) /gene="hpaR" /locus_tag="STM1100" /note="homoprotocatechuate degradation operon regulator, HpaR; Region: HpaR; TIGR02337" /db_xref="CDD:188209" regulatory complement(1187933..1187938) /regulatory_class="ribosome_binding_site" /gene="hpaR" /locus_tag="STM1100" /note="putative RBS for hpaR; RegulonDB:STMS1H001372" gene 1188201..1189498 /gene="hpaG" /locus_tag="STM1101" /db_xref="GeneID:1252619" regulatory 1188201..1188206 /regulatory_class="ribosome_binding_site" /gene="hpaG" /locus_tag="STM1101" /note="putative RBS for hpaG; RegulonDB:STMS1H001373" CDS 1188209..1189498 /gene="hpaG" /locus_tag="STM1101" /EC_number="4.1.1.68" /note="similar to E. coli putative isomerase (AAC74264.1); Blastp hit to AAC74264.1 (219 aa), 38% identity in aa 22 - 219, 29% identity in aa 35 - 211" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism protein" /protein_id="NP_460074.1" /db_xref="GeneID:1252619" /translation="MKGTVFAVALNHRSQLDAWREAFSQPPYNAPPKTAVWFIKPRNT VIRHGEPIPYPQGEKVLSGATVALIVGKTASRIRPEAAADYIAGYALANEVSLPEESF YRPAIKAKCRDGFCPLGEMAPLSDVDNLTIITEINGREADHWNTADLQRSAAQLLSAL SEFATLNPGDAILLGTPQNRVALRPGDRVRILAKGLPALENPVVAEDEFARHQTFTWP LSATGTLFALGLNYADHASELAFTPPKEPLVFIKAPNTFTEHHQTSVRPNNVEYMHYE AELVVVIGKTARKVSEAEAMEYVAGYTVCNDYAIRDYLENYYRPNLRVKSRDGLTPIG PWIVDKEAVSDPHNLTLRTFVNGELRQEGTTADLIFSIPFLISYLSEFMTLQPGDMIA TGTPKGLSDVVPGDEVVVEVEGVGRLVNRIVSEESAK" misc_feature 1188209..1189495 /gene="hpaG" /locus_tag="STM1101" /note="4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional; Region: PRK15203" /db_xref="CDD:185125" gene 1189481..1190961 /gene="hpaE" /locus_tag="STM1102" /db_xref="GeneID:1252620" regulatory 1189481..1189486 /regulatory_class="ribosome_binding_site" /gene="hpaG" /locus_tag="STM1101" /note="putative RBS for hpaE; RegulonDB:STMS1H001374" CDS 1189495..1190961 /gene="hpaE" /locus_tag="STM1102" /EC_number="1.2.1.60" /note="similar to E. coli aldehyde dehydrogenase, prefers NADP over NAD (AAC74382.1); Blastp hit to AAC74382.1 (495 aa), 39% identity in aa 23 - 493" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism protein" /protein_id="NP_460075.1" /db_xref="GeneID:1252620" /translation="MKKINHWINGKNVAGNDYFQTTNPATGDVLAEVASGGEAEVNQA VAAAKEAFPKWANLPMKERARLMRRLGDLIDQHVPEIAAMETADTGLPIHQTKNVLIP RASHNFEFFAEVCQQMNGKTYPVDDKMLNYTLVQPVGVCALVSPWNVPFMTATWKVAP CLALGNTAVLKMSELSPLTADRLGELALEAGIPAGVLNVVQGYGATAGDALVRHHDVR AVSFTGGTATGRNIMKNAGLKKYSMELGGKSPVLIFEDADIERALDAALFTIFSINGE RCTAGSRIFIQQSIYPEFVKRFAERANRLRVGDPTDPNTQVGALISQQHWEKVSGYIR LGIEEGATLLAGGAEKPTDLPAHLKGGNFLRPTVLADVDNRMRVAQEEIFGPVACLLP FKDEAEGLRLANDVEYGLASYIWTQDVSKVLRLARGIEAGMVFVNTQNVRDLRQPFGG VKASGTGREGGEYSFEVFAEMKNVCISMGDHPIPKWGV" misc_feature 1189555..1190922 /gene="hpaE" /locus_tag="STM1102" /note="Human aldehyde dehydrogenase family 8 member A1-like; Region: ALDH_F8_HMSADH; cd07093" /db_xref="CDD:143412" misc_feature order(1189927..1189935,1189951..1189953,1190005..1190007, 1190011..1190016,1190104..1190106,1190116..1190121, 1190161..1190169,1190176..1190178,1190185..1190187, 1190224..1190229,1190326..1190328,1190638..1190640, 1190644..1190646,1190836..1190838) /gene="hpaE" /locus_tag="STM1102" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143412" misc_feature order(1189936..1189938,1190224..1190226,1190317..1190319, 1190326..1190328) /gene="hpaE" /locus_tag="STM1102" /note="catalytic residues [active]" /db_xref="CDD:143412" gene 1190958..1191814 /gene="hpaD" /locus_tag="STM1103" /db_xref="GeneID:1252621" regulatory 1190958..1190963 /regulatory_class="ribosome_binding_site" /gene="hpaD" /locus_tag="STM1103" /note="putative RBS for hpaD; RegulonDB:STMS1H001375" CDS 1190963..1191814 /gene="hpaD" /locus_tag="STM1103" /EC_number="1.13.11.15" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism protein" /protein_id="NP_460076.1" /db_xref="GeneID:1252621" /translation="MGKLALAAKITHVPSMYLSELPGKNHGCRQAAIDGHIEIGKRCR EMGVDTIIVFDTHWLVNSAYHINCADHFQGVYTSNELPHFIRDMTYDYDGNPELGHLI ADEAVKLGVRAKAHNIPSLKLEYGTLVPMRYMNSDKHFKVVSISAFCTVHDFADSRRL GEAILKAIEKYDGTVAVFASGSLSHRFIDDQRAEEGMNSYTREFDHQMDERVVKLWRE GKFKEFCTMLPEYADYCYGEGNMHDTVMLLGMLGWDKYDGKVEFITDLFASSGTGQVN AVFPLPA" misc_feature 1190963..1191805 /gene="hpaD" /locus_tag="STM1103" /note="3,4-dihydroxyphenylacetate 2,3-dioxygenase; Region: HpaD_Fe; TIGR02298" /db_xref="CDD:131351" misc_feature order(1190996..1191004,1191131..1191133,1191335..1191337, 1191515..1191517,1191680..1191682,1191773..1191778) /gene="hpaD" /locus_tag="STM1103" /note="putative active site [active]" /db_xref="CDD:153382" misc_feature order(1190996..1190998,1191131..1191133) /gene="hpaD" /locus_tag="STM1103" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:153382" gene 1191818..1192204 /gene="hpaF" /locus_tag="STM1104" /db_xref="GeneID:1252622" regulatory 1191818..1191823 /regulatory_class="ribosome_binding_site" /gene="hpaF" /locus_tag="STM1104" /note="putative RBS for hpaF; RegulonDB:STMS1H001376" CDS 1191824..1192204 /gene="hpaF" /locus_tag="STM1104" /EC_number="5.3.3.10" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism protein" /protein_id="NP_460077.1" /db_xref="GeneID:1252622" /translation="MPHFIAECTENIREQADLPGLFSKVNEALAASGIFPIGGIRSRA HWLDTWQMADGKHDYAFVHMTLKIGAGRSLESRQEVGEMLFGLIKAHFADLMENRYLA LSFEIAELHPTLNYKQNNVHALFK" misc_feature 1191824..1192201 /gene="hpaF" /locus_tag="STM1104" /note="5-carboxymethyl-2-hydroxymuconate Delta-isomerase; Region: PRK15031" /db_xref="CDD:184991" misc_feature order(1191827..1191829,1191938..1191940,1191944..1191946, 1192028..1192030,1192037..1192039) /gene="hpaF" /locus_tag="STM1104" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:238324" misc_feature order(1191830..1191832,1191842..1191844,1191890..1191892, 1191899..1191901,1191932..1191937,1191941..1191982, 1191998..1192000,1192010..1192012,1192022..1192024, 1192052..1192057,1192076..1192078,1192088..1192090, 1192124..1192147,1192163..1192165) /gene="hpaF" /locus_tag="STM1104" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238324" gene 1192336..1193150 /gene="hpaH" /locus_tag="STM1105" /db_xref="GeneID:1252623" regulatory 1192336..1192341 /regulatory_class="ribosome_binding_site" /gene="hpaH" /locus_tag="STM1105" /note="putative RBS for hpaH; RegulonDB:STMS1H001377" CDS 1192347..1193150 /gene="hpaH" /locus_tag="STM1105" /EC_number="4.2.1.-" /note="similar to E. coli 2-keto-4-pentenoate hydratase (AAC73453.1); Blastp hit to AAC73453.1 (271 aa), 34% identity in aa 6 - 261" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism protein" /protein_id="NP_460078.1" /db_xref="GeneID:1252623" /translation="MLDKQTHTLIAQRLNQAEKQREQIRAVSLDYPNITIEDAYAVQR EWVNIKIAEGRTLKGHKIGLTSKAMQASSQISEPDYGALLDDMFFHDGGDIPTDRFIV PRIEVELAFVLAKPLRGPHCTLFDVYNATDYVIPALELIDARSHNIDPETQRPRKVFD TISDNAANAGVILGGRPIKPDELDLRWISALLYRNGVIEETGVAAGVLNHPANGVAWL ANKLAPYDVQLEAGQIILGGSFTRPVPARKGDTFHVDYGNMGAISCRFV" misc_feature 1192347..1193147 /gene="hpaH" /locus_tag="STM1105" /note="Protein of unknown function (DUF2848); Region: DUF2848; cl11421" /db_xref="CDD:472178" gene 1193154..1193952 /gene="hpaI" /locus_tag="STM1106" /db_xref="GeneID:1252624" regulatory 1193154..1193159 /regulatory_class="ribosome_binding_site" /gene="hpaI" /locus_tag="STM1106" /note="putative RBS for hpaI; RegulonDB:STMS1H001378" CDS 1193161..1193952 /gene="hpaI" /locus_tag="STM1106" /EC_number="4.1.2.-" /note="similar to E. coli orf, hypothetical protein (AAC75305.1); Blastp hit to AAC75305.1 (267 aa), 56% identity in aa 5 - 260" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism protein" /protein_id="NP_460079.1" /db_xref="GeneID:1252624" /translation="MKNAFKDALKAGRPQIGLWLGLANSYSAELLAGAGFDWLLIDGE HAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQLLDVGAQTLLIPMVQNADEAR NAVAATRYPPAGIRGVGSALARASRWNRIPEYLHLANDAMCVLVQIETREAMSNLASI LDVDGIDGVFIGPADLSADMGFAGNPQHPEVQAAIENAIVQIRAAGKAPGILMANEAL AKRYLELGALFVAVGVDTTLLARGAEALAARFGVEKKLSGASGVY" misc_feature 1193167..1193913 /gene="hpaI" /locus_tag="STM1106" /note="2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Region: HpaI; TIGR02311" /db_xref="CDD:131364" gene 1194017..1195400 /gene="hpaX" /locus_tag="STM1107" /db_xref="GeneID:1252625" regulatory 1194017..1194022 /regulatory_class="ribosome_binding_site" /gene="hpaX" /locus_tag="STM1107" /note="putative RBS for hpaX; RegulonDB:STMS1H001379" CDS 1194024..1195400 /gene="hpaX" /locus_tag="STM1107" /note="similar to E. coli putative transport protein (AAC75306.1); Blastp hit to AAC75306.1 (442 aa), 31% identity in aa 22 - 428" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism protein" /protein_id="NP_460080.1" /db_xref="GeneID:1252625" /translation="MSDTSSALPESPESVSSHNALSTGQQTVINKLFRRLIVFLFVLF IFSFLDRINIGFAGLTMGQDLGLSATMFGLATTLFYATYVIFGIPSNVMLSIVGARHW IATIMVLWGIASTATMFAVGPKSLYVLRMLVGITEAGFLPGILLYLTYWFPAFFRARA NALFMIAMPATTALGSIVSGYILSLDGIFNLHGWQWLFLLEGFPSVLLGIMVWFYLDD TPAKAKWLTAEDKKCLQEMMDSDRLTLVQPEGAISHNAMQQRSLWREVFTPIVLMYTL AYFCLTNTLSAISIWTPQILKSFNEGSSNITIGLLAAIPQICTILGMIYWSRHSDKHQ ERKHHTALPFLFAAAGWLLASATDHNLIQLLGIVMASTGSFSAMAIFWTTPDQSISLR ARAIGIAVINATGNIGSALSPFMIGWLKDITGSFNSGLWFVASLLVVGAAIIWLIPMK ASRPRATP" misc_feature 1194105..1195340 /gene="hpaX" /locus_tag="STM1107" /note="4-hydroxyphenylacetate permease; Region: HpaX; TIGR02332" /db_xref="CDD:131385" gene 1195402..1196306 /gene="hpaA" /locus_tag="STM1108" /db_xref="GeneID:1252626" regulatory 1195402..1195407 /regulatory_class="ribosome_binding_site" /gene="hpaA" /locus_tag="STM1108" /note="putative RBS for hpaA; RegulonDB:STMS1H001380" CDS 1195410..1196306 /gene="hpaA" /locus_tag="STM1108" /note="similar to E. coli putative ARAC-type regulatory protein (AAC74766.1); Blastp hit to AAC74766.1 (303 aa), 25% identity in aa 181 - 281" /codon_start=1 /transl_table=11 /product="4-hydroxyphenylacetate catabolism protein" /protein_id="NP_460081.1" /db_xref="GeneID:1252626" /translation="MCQRAIANIDISKEYDESMGSNDVHYQSFARMADFFGRDMQAHR HDQFFQMHFLDTGQIELQLDDHRYSVQAPLFVLTPPSVPHAFITESDSDGHVLTVREE LVWPLLEVLYPGTREAFGLPGICLSLADKPNELAALKHYWQLIERESTEQLAGCEHTL VLLAQAVFTLLLRNAKLDDHAATGMRGELKLFQRFTLLIDNHFHQHWTVPDYACELHI TESRLTDICRRFANRPPKRLIFDRQLREAKRLLLFSDNAVNEIAWQLGFKDPAYFARF FNRLAGCSPSQFRQREVPSFLN" misc_feature 1195422..1196282 /gene="hpaA" /locus_tag="STM1108" /note="4-hydroxyphenylacetate catabolism regulatory protein HpaA; Region: HpaA; TIGR02297" /db_xref="CDD:131350" gene 1196316..1197258 /locus_tag="STM1109" /db_xref="GeneID:1252627" regulatory 1196316..1196321 /regulatory_class="ribosome_binding_site" /locus_tag="STM1109" /note="putative RBS for STM1109; RegulonDB:STMS1H001381" CDS 1196320..1197258 /locus_tag="STM1109" /note="similar to E. coli orf, hypothetical protein (AAC75328.1); Blastp hit to AAC75328.1 (311 aa), 27% identity in aa 7 - 147, 27% identity in aa 155 - 277" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460082.1" /db_xref="GeneID:1252627" /translation="MMKKSVAMLAVCMLAQSHLAIAAGTPAPQEINIVLLGTKGGPSL LNTARLPQATALTIGDKIWLIDAGYGASLQLVKNGIPLRNINTILLTHLHSDHILDYP SLLMNAWASGLKDHTIQVYGPPGTQAMTKASWKVFDRDITLRMEEEGKPDPRNLVKAT DIGQGVIYKDELVTISALKVPHSPFPDGEAFAYRFDTQGKRIVFSGDTSWFPPLATFA QGADILVHEAVHVPSVAKLANSIGNGKTLAEAIASHHTTIEDVGKIARESHVKKLVLS HLVPATVADDVWQQEAMKNYPGPVIVGHDNMTISVP" misc_feature 1196416..1196997 /locus_tag="STM1109" /note="Pseudoalteromonas carrageenovora arylsulfatase AtsA and related proteins; MBL-fold metallo-hydrolase domain; Region: arylsulfatase_AtsA-like_MBL-fold; cd07719" /db_xref="CDD:293805" misc_feature order(1196593..1196595,1196599..1196601,1196605..1196610, 1196863..1196868,1196938..1196940,1196995..1196997) /locus_tag="STM1109" /note="putative active site [active]" /db_xref="CDD:293805" gene complement(1197666..1198040) /locus_tag="STM1110" /db_xref="GeneID:1252628" CDS complement(1197666..1198028) /locus_tag="STM1110" /note="RssC (gi|12004175)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460083.1" /db_xref="GeneID:1252628" /translation="MEWKVVDTVISPSTGVSFSCIHSLKNLRLTLWYQADVYMPPGSI IIPFNKGVLINDKLYPVTVYNVTRFNPVLWKSLKENSHCPGNCNPKSEACSYPFECLV SVCPFGLTRNIQIDNKKV" misc_feature complement(1197687..1198028) /locus_tag="STM1110" /note="anti-adapter protein IraM; Provisional; Region: PRK09919" /db_xref="CDD:236633" regulatory complement(1198035..1198040) /regulatory_class="ribosome_binding_site" /locus_tag="STM1110" /note="putative RBS for STM1110; RegulonDB:STMS1H001382" gene complement(1198682..1199002) /gene="yccD" /locus_tag="STM1111" /db_xref="GeneID:1252629" CDS complement(1198682..1198987) /gene="yccD" /locus_tag="STM1111" /note="similar to E. coli orf, hypothetical protein (AAC74084.1); Blastp hit to AAC74084.1 (101 aa), 74% identity in aa 1 - 101" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460084.1" /db_xref="GeneID:1252629" /translation="MANITVTFTITEFCLHTGVTEEELNEIVGLGVIEPYEDDNADWQ FDDRAASVVQRALRLREELALDWPGIAVALTLLEENSRLREENRLLLQRLSRFISHP" misc_feature complement(1198685..1198987) /gene="yccD" /locus_tag="STM1111" /note="chaperone modulator CbpM; Region: PRK10265" /db_xref="CDD:182346" gene complement(1198987..1199999) /gene="cbpA" /locus_tag="STM1112" /db_xref="GeneID:1252630" CDS complement(1198987..1199907) /gene="cbpA" /locus_tag="STM1112" /note="curved DNA-binding protein. (SW:CBPA_SALTY)" /codon_start=1 /transl_table=11 /product="curved DNA-binding protein" /protein_id="NP_460085.1" /db_xref="GeneID:1252630" /translation="MELKDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEA RFKEVAEAWEVLSDEQRRAEYDQLWQHRNDPQFNRQFQQHEGQPYNAEDFDDIFSSIF GQHGRHSHHRHAARGHDIEIEVAVFLEETLEEHQRTISYSVPVYNAFGLVEREIPKTL NVKIPAGVSNGQRIRLKGQGTPGENGGPNGDLWLVIHIAPHPLFDIVNQDLEVVLPLA PWEAALGAKVSVPTLKERILLTIPPGSQAGQRLRIKGKGLASKKHTGDLYAIIKIVMP PKPDEKTAALWQQLADAQSSFDPRQQWGKA" misc_feature complement(1198990..1199907) /gene="cbpA" /locus_tag="STM1112" /note="curved DNA-binding protein; Region: PRK10266" /db_xref="CDD:182347" regulatory complement(1198997..1199002) /regulatory_class="ribosome_binding_site" /gene="yccD" /locus_tag="STM1111" /note="putative RBS for yccD; RegulonDB:STMS1H001383" regulatory complement(1199913..1199918) /regulatory_class="ribosome_binding_site" /gene="cbpA" /locus_tag="STM1112" /note="putative RBS for cbpA; RegulonDB:STMS1H001384" regulatory complement(1199972..1199980) /regulatory_class="minus_10_signal" /gene="cbpA" /locus_tag="STM1112" /note="putative -10_signal for cbpA; RegulonDB:STMLTH004469" regulatory complement(1199991..1199999) /regulatory_class="minus_35_signal" /gene="cbpA" /locus_tag="STM1112" /note="putative -35_signal for cbpA; RegulonDB:STMLTH004469" gene 1200137..1200504 /gene="scsA" /locus_tag="STM1113" /db_xref="GeneID:1252631" regulatory 1200137..1200142 /regulatory_class="ribosome_binding_site" /gene="scsA" /locus_tag="STM1113" /note="putative RBS for scsA; RegulonDB:STMS1H001385" CDS 1200142..1200504 /gene="scsA" /locus_tag="STM1113" /note="suppressor for copper-sensitivity A (gi|2327003)" /codon_start=1 /transl_table=11 /product="suppression of copper sensitivity: putative copper binding protein" /protein_id="NP_460086.1" /db_xref="GeneID:1252631" /translation="MAKQQRMGWWFLCLACVVVMVCTAQRMAGLHALQMQATASAAVV SAPSSTDDGSPVTPCELSAKSLLAAPPVLFEGAILALCLLLSLLAPVRVMRLPFSPPR AISPPTLRVHLRFCVFRE" gene 1200547..1202439 /gene="scsB" /locus_tag="STM1114" /db_xref="GeneID:1252632" regulatory 1200547..1200552 /regulatory_class="ribosome_binding_site" /gene="scsB" /locus_tag="STM1114" /note="putative RBS for scsB; RegulonDB:STMS1H001386" CDS 1200553..1202439 /gene="scsB" /locus_tag="STM1114" /note="suppressor for copper-sensitivity B (gi|2327004)" /codon_start=1 /transl_table=11 /product="suppression of copper sensitivity protein" /protein_id="NP_460087.1" /db_xref="GeneID:1252632" /translation="MMILFRRILFCLLWLWLPVSWAAESGWLRSPDNDHASIRLRADT SANGETRLLLDVKLENGWKTYWRAPGEGGVAPSIAWKGDMPEVSWFWPTPSRFDVANI TTQGYHDEVTFPMIVRGTLPATLRGVLTLSTCSNVCLLTDYPFSVTPTVQNADFAHDY ARAMGKIPLRSGLTDSLDVGYRPGELVVTATRAAGWSSPGLYLDTVDDVDFAKPRLRV EGDRLQATVPVTDSWGEKAPDLRNKSLTLVLADGAIAQESTQTIGTAPAQTPDNAALP FWQVVMMALIGGLILNLMPCVLPVLGMKLGSILLVEEKSRSHIRRQFLASVAGIIASF MALAAFMTLLRLSNHALAWGVQFQNVWFIGFMALVMLLFSASLFGLFEFRLPSSMTTK LATYGGNGMSGHFWQGAFATLLATPCSAPFLGTAVAVALTASLPTLWGLFLALGLGMS APWLLVAIRPGLALRLPRPGRWMNVLRRILGLMMLGSAIWLATLLLPHFGFTASKSAQ DTVQWQPLSEQAIQSALAQHKRVFVDVTADWCITCKVNKYNVLQKEDVQAALQQPDVV ALRGDWTLPSDAITDFLKTRGQVAVPFNQVYGPGLPEGEALPTLLTRDAVLQTLKKAK GITQ" misc_feature 1200682..1200996 /gene="scsB" /locus_tag="STM1114" /note="Disulphide bond corrector protein DsbC; Region: DsbC; pfam11412" /db_xref="CDD:463273" misc_feature 1201387..1202427 /gene="scsB" /locus_tag="STM1114" /note="Thiol:disulfide interchange protein DsbD [Posttranslational modification, protein turnover, chaperones]; Region: DsbD; COG4232" /db_xref="CDD:443376" gene 1202429..1203059 /gene="scsC" /locus_tag="STM1115" /db_xref="GeneID:1252633" regulatory 1202429..1202434 /regulatory_class="ribosome_binding_site" /gene="scsC" /locus_tag="STM1115" /note="putative RBS for scsC; RegulonDB:STMS1H001387" CDS 1202436..1203059 /gene="scsC" /locus_tag="STM1115" /note="suppressor for copper-sensitivity C (gi|2327005)" /codon_start=1 /transl_table=11 /product="suppression of copper sensitivity protein" /protein_id="NP_460088.1" /db_xref="GeneID:1252633" /translation="MKYMIVLLLALFSTLSIAQETAPFTPDQEKQIENLIHAALFNDP ASPRIGAKHPKLTLVNFTDYNCPYCKQLDPMLEKIVQKYPDVAVIIKPLPFKGESSVL AARIALTTWREHPQQFLALHEKLMQKRVYHTDDSIKQAQQKAGATPVTLDEKSMETIR TNLQLARLVGVQGTPATIIGDELIPGAVPWDTLEAVVKEKLASANGG" misc_feature 1202436..>1202684 /gene="scsC" /locus_tag="STM1115" /note="The thioredoxin (TRX)-like superfamily is a large, diverse group of proteins containing a TRX fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox...; Region: Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; cl00388" /db_xref="CDD:469754" misc_feature 1202583..1203029 /gene="scsC" /locus_tag="STM1115" /note="DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC...; Region: DsbA_Com1_like; cd03023" /db_xref="CDD:239321" misc_feature order(1202631..1202633,1202640..1202642) /gene="scsC" /locus_tag="STM1115" /note="catalytic residues [active]" /db_xref="CDD:239321" gene 1203044..1203555 /gene="scsD" /locus_tag="STM1116" /db_xref="GeneID:1252634" regulatory 1203044..1203049 /regulatory_class="ribosome_binding_site" /gene="scsD" /locus_tag="STM1116" /note="putative RBS for scsD; RegulonDB:STMS1H001388" CDS 1203049..1203555 /gene="scsD" /locus_tag="STM1116" /note="suppressor for copper-sensitivity D (gi|2327006)" /codon_start=1 /transl_table=11 /product="suppression of copper sensitivity protein" /protein_id="NP_460089.1" /db_xref="GeneID:1252634" /translation="MAGKLRRWLREAAVFLALLIAIMVVMDVWRAPQAPPAFATTPLR TLTGESTTLATLSEERPVLLYFWASWCGVCRFTTPAVARLAAEGENVMTVALRSGDDA EVARWLARKGVDFPVVNDANGALSAGWEISVTPTLVVVSQGRVVFTTSGWTSYWGMKL RLWWAKTF" misc_feature 1203154..1203537 /gene="scsD" /locus_tag="STM1116" /note="TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif; Region: TlpA_like_ScsD_MtbDsbE; cd03011" /db_xref="CDD:239309" misc_feature order(1203259..1203261,1203268..1203270) /gene="scsD" /locus_tag="STM1116" /note="catalytic residues [active]" /db_xref="CDD:239309" gene 1203676..1204929 /gene="agp" /locus_tag="STM1117" /db_xref="GeneID:1252635" regulatory 1203676..1203681 /regulatory_class="ribosome_binding_site" /gene="agp" /locus_tag="STM1117" /note="putative RBS for agp; RegulonDB:STMS1H001389" CDS 1203688..1204929 /gene="agp" /locus_tag="STM1117" /EC_number="3.1.3.10" /note="glucose-1-phosphatase precursor. (SW:AGP_SALTY)" /codon_start=1 /transl_table=11 /product="glucose-1-phosphatase" /protein_id="NP_460090.1" /db_xref="GeneID:1252635" /translation="MKKSLLAVAVAGAVLLSSAVQAQTTPEGYQLQQVLMMSRHNLRA PLANNGSVLAQSTPNAWPAWDVPGGQLTTKGGVLEVYMGHYTREWLVAQGLIPSGECP APDTVYAYANSLQRTVATAQFFITGAFPGCDIPVHHQEKMGTMDPTFNPVITDDSAAF RQQAVQAMEKARSQLHLDESYKLLEQITHYQDSPSCKEKHQCSLIDAKDTFSANYQQE PGVQGPLKVGNSLVDAFTLQYYEGFPMDQVAWGGIHTDRQWKVLSKLKNGYQDSLFTS PTVARNVAAPLVKYIDKVLVADRVSAPKVTVLVGHDSNIASLLTALDFKPYQLHDQYE RTPIGGQLVFQRWHDGNANRDLMKIEYVYQSARQLRNAEALTLKSPAQRVTLELKGCP VDANGFCPLDKFDNVMNTAAK" misc_feature 1203688..1204926 /gene="agp" /locus_tag="STM1117" /note="glucose-1-phosphatase/inositol phosphatase; Provisional; Region: PRK10173" /db_xref="CDD:182284" misc_feature order(1203802..1203807,1203814..1203816,1204033..1204035, 1204618..1204623) /gene="agp" /locus_tag="STM1117" /note="catalytic core [active]" /db_xref="CDD:132717" gene complement(1204963..1205203) /gene="yccJ" /locus_tag="STM1118" /db_xref="GeneID:1252636" CDS complement(1204963..1205190) /gene="yccJ" /locus_tag="STM1118" /note="similar to E. coli orf, hypothetical protein (AAC74088.1); Blastp hit to AAC74088.1 (75 aa), 92% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460091.1" /db_xref="GeneID:1252636" /translation="MPTQEAKAHRVGEWASLRNTSPEIAEAIFEVAHYDEKLAEKIWE EGSDEVLIKAFEKTDKDSLFWGEQIIERKNV" misc_feature complement(1204966..1205190) /gene="yccJ" /locus_tag="STM1118" /note="hypothetical protein; Provisional; Region: PRK10174" /db_xref="CDD:182285" regulatory complement(1205198..1205203) /regulatory_class="ribosome_binding_site" /gene="yccJ" /locus_tag="STM1118" /note="putative RBS for yccJ; RegulonDB:STMS1H001390" gene complement(1205211..1205821) /gene="wraB" /locus_tag="STM1119" /db_xref="GeneID:1252637" CDS complement(1205211..1205807) /gene="wraB" /locus_tag="STM1119" /note="similar to E. coli trp repressor binding protein; affects association of trp repressor and operator (AAC74089.1); Blastp hit to AAC74089.1 (198 aa), 94% identity in aa 1 - 198" /codon_start=1 /transl_table=11 /product="trp-repressor binding protein" /protein_id="NP_460092.1" /db_xref="GeneID:1252637" /translation="MAKILVLYYSMYGHIETMAHAVAEGAKKVDGAEVIIKRVPETMP PEIFAKAGGKTQNAPVATPQELADYDAIIFGTPTRFGNMSGQMRTFLDQTGGLWASGS LYGKLGSVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPIGYAAQELFDVSQVRGGTPY GATTIAGGDGSRQPSQEELSIARYQGEYVAGLAVKLNG" misc_feature complement(1205214..1205807) /gene="wraB" /locus_tag="STM1119" /note="NAD(P)H:quinone oxidoreductase; Provisional; Region: PRK03767" /db_xref="CDD:179647" regulatory complement(1205816..1205821) /regulatory_class="ribosome_binding_site" /gene="wraB" /locus_tag="STM1119" /note="putative RBS for wraB; RegulonDB:STMS1H001391" gene 1206155..1206262 /gene="ycdF" /locus_tag="STM1120" /note="pseudogene; in-frame stops following codons 5 and 21" /pseudo /db_xref="GeneID:1252638" gene 1206186..1206359 /gene="ymdF" /locus_tag="STM1121" /db_xref="GeneID:1252639" regulatory 1206186..1206191 /regulatory_class="ribosome_binding_site" /gene="ycdF" /locus_tag="STM1120" /note="putative RBS for ymdF; RegulonDB:STMS1H001393" /pseudo CDS 1206192..1206359 /gene="ymdF" /locus_tag="STM1121" /note="similar to E. coli orf, hypothetical protein (AAC74341.1); Blastp hit to AAC74341.1 (78 aa), 87% identity in aa 20 - 73" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460093.1" /db_xref="GeneID:1252639" /translation="MANHRGGSGNFAEDRERASEAGRKGGQHSGGNFKNDPQRASEAG KKGGKSSNRNS" misc_feature 1206198..1206356 /gene="ymdF" /locus_tag="STM1121" /note="General stress protein YciG, contains tandem KGG domains [General function prediction only]; Region: GsiB; COG3729" /db_xref="CDD:442943" gene 1206483..1207134 /gene="ycdC" /locus_tag="STM1122" /db_xref="GeneID:1252640" regulatory 1206483..1206488 /regulatory_class="ribosome_binding_site" /gene="ycdC" /locus_tag="STM1122" /note="putative RBS for ycdC; RegulonDB:STMS1H001394" CDS 1206496..1207134 /gene="ycdC" /locus_tag="STM1122" /note="similar to E. coli putative tet operon regulator (AAC74098.1); Blastp hit to AAC74098.1 (212 aa), 83% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="putative transcriptional repressor (TetR/AcrR family)" /protein_id="NP_460094.1" /db_xref="GeneID:1252640" /translation="MSQRTEKKIGKRSQATGAKRQLILTAALAVFSQYGIHGARLEQV AERAGVSKTNLLYYYPSKEALYVAVMRQILDVWLAPLKAFRAEFSPLEAIKEYIRLKL EVSRDYPQASRLFCMEMLAGAPLLMEELTGDLKALIDEKSALIAGWVHSGKLAPISPH HLIFMIWAATQHYADFAPQVEAVTGATLRDEAFFNQTVESVQRIIIEGIRVR" misc_feature 1206496..1207131 /gene="ycdC" /locus_tag="STM1122" /note="HTH-type transcriptional regulator RutR; Provisional; Region: PRK15008" /db_xref="CDD:184970" gene complement(1207131..1207533) /locus_tag="STM1123" /db_xref="GeneID:1252641" CDS complement(1207131..1207526) /locus_tag="STM1123" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460095.1" /db_xref="GeneID:1252641" /translation="MKRIFLTCAALLISSQALADECASASTQLEMNRCAAAQYQAADK KLNETYQSALKRAQPPQRELLQKAQVAWIALRDADCALIRSGTEGGSVQPMIASQCLT DKTNEREAFLASLLQCEEGDLSCPLPPAG" misc_feature complement(1207173..1207526) /locus_tag="STM1123" /note="Uncharacterized conserved protein YecT, DUF1311 family [Function unknown]; Region: YecT; COG3755" /db_xref="CDD:442969" regulatory complement(1207528..1207533) /regulatory_class="ribosome_binding_site" /locus_tag="STM1123" /note="putative RBS for STM1123; RegulonDB:STMS1H001395" gene complement(1207585..1211547) /gene="putA" /locus_tag="STM1124" /db_xref="GeneID:2673752" CDS complement(1207585..1211547) /gene="putA" /locus_tag="STM1124" /EC_number="1.2.1.88" /EC_number="1.5.5.2" /note="PUTA protein (SW:PUTA_SALTY); bifunctional in plasma membrane proline dehydrogenase and pyrroline-5-carboxylate dehydrogenase OR in cytoplasm a transcriptional repressor; plasma membrane pyrroline-5-carboxylate dehydrogenase" /codon_start=1 /transl_table=11 /product="cytoplasmic transcriptional repressor" /protein_id="NP_447555.1" /db_xref="GeneID:2673752" /translation="MGTTTMGVKLDDATRERIKMAASRIDRTPHWLIKQAIFSYLDKL ENSDTLPELPALFVGAANESEEPVAPQDEPHQPFLEFAEQILPQSVSRAAITAAWRRP ETDAVSMLMEQARLSPPVAEQAHKLAYQLAEKLRNQKSASGRAGMVQGLLQEFSLSSQ EGVALMCLAEALLRIPDKATRDALIRDKISNGNWQSHIGRSPSLFVNAATWGLLFTGR LVSTHNEANLSRSLNRIIGKSGEPLIRKGVDMAMRLMGEQFVTGETIAQALANARKLE EKGFRYSYDMLGEAALTAADAQAYMVSYQQAIHAIGKASNGRGIYEGPGISIKLSALH PRYSRAQYDRVMEELYPRLKSLTLLARQYDIGLNIDAEEADRLEISLDLLEKLCFEPE LAGWNGIGFVIQAYQKRCPLVIDYLVDLASRSRRRLMIRLVKGAYWDSEIKRAQMEGL EGYPVYTRKVYTDVSYLACAKKLLAVPNLIYPQFATHNAHTLAAIYHLAGQNYYPGQY EFQCLHGMGEPLYEQVTGKVADGKLNRPCRIYAPVGTHETLLAYLVRRLLENGANTSF VNRIADATLPLDELVADPVEAVEKLAQQEGQAGIPHPKIPLPRDLYGEGRINSAGLDL ANEHRLASLSSALLSNAMQKWQAKPVLEQPVADGEMTPVINPAEPKDIVGWGREATES EVEQALQNAVNQAPVWFATPPQERAAILQRAAVLMEDQMQQLIGLLVREAGKTFSNAI AEVREAVDFLHYYAGQVRDDFDNETHRPLGPVVCISPWNFPLAIFTGQIAAALAAGNS VLAKPAEQTSLIAAQGIAILLEAGVPPGVVQLLPGRGETVGAQLTADARVRGVMFTGS TEVATLLQRNIATRLDAQGRPIPLIAETGGMNAMIVDSSALTEQVVVDVLASAFDSAG QRCSALRVLCLQDDIAEHTLKMLRGAMAECRMGNPGRLTTDIGPVIDSEAKANIERHI QTMRAKGRPVFQAARENSDDAQEWQTGTFVMPTLIELENFAELEKEVFGPVLHVVRYN RNQLAELIEQINASGYGLTLGVHTRIDETIAQVTGSAHVGNLYVNRNMVGAVVGVQPF GGEGLSGTGPKAGGPLYLYRLLAHRPPNALNTTLTRQDARYPVDAQLKTTLLAPLTAL TQWAADRPALQTLCRQFADLAQAGTQRLLPGPTGERNTWTLLPRERVLCLADDEQDAL TQLAAVLAVGSQALWSDDAFHRDLAKRLPAAVAARVQFAKAETLMAQPFDAVIFHGDS DKLRTVCEAVAAREGAIVSVQGFARGESNILLERLYIERSLSVNTAAAGGNASLMTIG " misc_feature complement(1207588..1211547) /gene="putA" /locus_tag="STM1124" /note="trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed; Region: putA; PRK11809" /db_xref="CDD:236989" regulatory complement(1211556..1211561) /regulatory_class="ribosome_binding_site" /note="putative RBS for putA; RegulonDB:STMS1H001396" regulatory complement(1211660..1211668) /regulatory_class="minus_10_signal" /note="putative -10_signal for putA; RegulonDB:STMLTH004470" regulatory complement(1211676..1211684) /regulatory_class="minus_35_signal" /note="putative -35_signal for putA; RegulonDB:STMLTH004470" gene 1211904..1213477 /gene="putP" /locus_tag="STM1125" /db_xref="GeneID:1252643" regulatory 1211904..1211912 /regulatory_class="minus_35_signal" /gene="putP" /locus_tag="STM1125" /note="putative -35_signal for putP; RegulonDB:STMLTH004471" regulatory 1211931..1211939 /regulatory_class="minus_10_signal" /gene="putP" /locus_tag="STM1125" /note="putative -10_signal for putP; RegulonDB:STMLTH004471" regulatory 1211956..1211961 /regulatory_class="ribosome_binding_site" /gene="putP" /locus_tag="STM1125" /note="putative RBS for putP; RegulonDB:STMS1H001397" CDS 1211969..1213477 /gene="putP" /locus_tag="STM1125" /note="sodium/proline symporter (proline permease). (SW:PUTP_SALTY)" /codon_start=1 /transl_table=11 /product="SSS family major sodium/proline symporter" /protein_id="NP_460097.1" /db_xref="GeneID:1252643" /translation="MAISTPMLVTFCVYIFGMILIGFIAWRSTKNFDDYILGGRSLGP FVTALSAGASDMSGWLLMGLPGAIFLSGISESWIAIGLTLGAWINWKLVAGRLRVHTE FNNNALTLPDYFTGRFEDKSRVLRIISALVILLFFTIYCASGIVAGARLFESTFGMSY ETALWAGAAATIIYTFIGGFLAVSWTDTVQASLMIFALILTPVMVIVGVGGFSESLEV IKQKSIENVDMLKGLNFVAIISLMGWGLGYFGQPHILARFMAADSHHSIVHARRISMT WMILCLAGAVAVGFFGIAYFNNNPALAGAVNQNSERVFIELAQILFNPWIAGVLLSAI LAAVMSTLSCQLLVCSSAITEDLYKAFLRKSASQQELVWVGRVMVLVVALIAIALAAN PDNRVLGLVSYAWAGFGAAFGPVVLFSVMWSRMTRNGALAGMIIGAVTVIVWKQYGWL DLYEIIPGFIFGSLGIVIFSLLGKAPTAAMQERFAKADAHYHSAPPSKLQAE" misc_feature 1211969..1213474 /gene="putP" /locus_tag="STM1125" /note="sodium/proline symporter PutP; Region: PRK15419" /db_xref="CDD:185317" misc_feature order(1212125..1212127,1212134..1212136,1212977..1212979, 1212986..1212991) /gene="putP" /locus_tag="STM1125" /note="Na binding site [ion binding]; other site" /db_xref="CDD:271369" gene 1214284..1215158 /gene="phoH" /locus_tag="STM1126" /db_xref="GeneID:2673763" regulatory 1214284..1214289 /regulatory_class="ribosome_binding_site" /gene="phoH" /locus_tag="STM1126" /note="putative RBS for phoH; RegulonDB:STMS1H001398" CDS 1214304..1215158 /gene="phoH" /locus_tag="STM1126" /note="similar to E. coli PhoB-dependent, ATP-binding pho regulon component; may be helicase; induced by P starvation (AAC74105.1); Blastp hit to AAC74105.1 (354 aa), 92% identity in aa 71 - 354" /codon_start=1 /transl_table=11 /product="PhoB-dependent ATP-binding pho regulon component" /protein_id="NP_447557.1" /db_xref="GeneID:2673763" /translation="MCAHNRVQENAGDVYLQLKVLSMGRQKAVIKARREAKRVLRRDS RSHKQREEESVTSLVQMGGVEAIGMARDSRDTSPVKARNEAQAHYLNAIDSKQLIFAT GEAGCGKTWISAAKAAEALIHKDVERIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPV YDVLLKRLGASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMF LTRLGENVTVIVNGDITQCDLPRGVRSGLSDALERFEEDEMVGIVHFNKDDCVRSALC QRTLHAYS" misc_feature 1214370..1215155 /gene="phoH" /locus_tag="STM1126" /note="phosphate starvation-inducible protein PhoH; Region: PRK10536" /db_xref="CDD:182529" gene complement(1215264..1216153) /locus_tag="STM1127" /db_xref="GeneID:1252645" CDS complement(1215264..1216145) /locus_tag="STM1127" /note="similar to E. coli orf, hypothetical protein (AAC75480.1); Blastp hit to AAC75480.1 (285 aa), 29% identity in aa 15 - 264" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_460099.1" /db_xref="GeneID:1252645" /translation="MEPQPPRLKPGKILDTLGAMQKSLTRASQRIAQYILAFPRQVTQ SSIADLSRETQAGEATVIRFCRTLGYKGFQDFKMDLAIELATTESDDSSPLLDAEVSE SDDAHAIGLKLQNTISNVLSETLNLLDMQQVLGVVDALRHCHSVYIFGVGSSGITALD MKHKLMRIGLRGDAVSNNHFMYMQATLLKAGDVAMGVSHSGTSPETVHSLRLARQAGA TTVAITHNLGSPLCEEADFCLINGNRQGMLQGDSIGTKAAQLFVFDLLYTLLVQSSPE QARESKLRTMNALDMTK" misc_feature complement(1215267..1216121) /locus_tag="STM1127" /note="DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains [Transcription]; Region: RpiR; COG1737" /db_xref="CDD:441343" regulatory complement(1216148..1216153) /regulatory_class="ribosome_binding_site" /locus_tag="STM1127" /note="putative RBS for STM1127; RegulonDB:STMS1H001399" gene complement(1216430..1217938) /locus_tag="STM1128" /db_xref="GeneID:1252646" CDS complement(1216430..1217926) /locus_tag="STM1128" /note="similar to E. coli putative cotransporter (AAC76702.1); Blastp hit to AAC76702.1 (571 aa), 22% identity in aa 7 - 478" /codon_start=1 /transl_table=11 /product="putative sodium/glucose cotransporter" /protein_id="NP_460100.1" /db_xref="GeneID:1252646" /translation="MITHSFGIVNYLVLFGYLLAMMLVGVYFSRRQKTADDYFRGGGR VPGWAAGVSVFATTLSSITFMSIPAKAFTSDWTFIIGQYLAIAILPLVFYFYIPFFRK LKVTSAYEYLEARFDVRCRLFASMSFMLFHIGRIAIITFLTVLALRPFIAIDPVILVL LISVMCIIYTWMGGIEGVIWTDVIQGLLLSGSAILIFIVICLKVQGGIDEIFTVTQQA DKFFPATQFHWSWTESTVPVLMIGFLFANIQQFTASQDVVQRYIVTDSIEETKKTLLT NAKLVAVIPVFFFAIGSALFVYYQQHPQLLPAGFNTGGILPLFVVTEMPVGIAGLIIA AIFAAAQSSISSSLNSISSCFNSDIYQRLSHKKRTPENRMKIAKLVILVAGLISSAAS VWLVMADESEIWDAFNSLIGLMGGPMTGLFMLGIFFKRANAGSAVLGIIISVITVLGA RYATDLNFFFYGVIGSLSVVISGVIFAPLFAPAPPLTLDEKPEPKVTL" misc_feature complement(1216490..1217911) /locus_tag="STM1128" /note="uncharacterized subgroup of the Na(+)/iodide (NIS) cotransporter subfamily; putative solute-binding domain; Region: SLC5sbd_NIS-like_u3; cd11495" /db_xref="CDD:271386" misc_feature complement(order(1216898..1216903,1216910..1216912, 1217750..1217752,1217759..1217761)) /locus_tag="STM1128" /note="Na binding site [ion binding]; other site" /db_xref="CDD:271386" regulatory complement(1217933..1217938) /regulatory_class="ribosome_binding_site" /locus_tag="STM1128" /note="putative RBS for STM1128; RegulonDB:STMS1H001400" gene complement(1218263..1218949) /locus_tag="STM1129" /db_xref="GeneID:1252647" CDS complement(1218263..1218943) /locus_tag="STM1129" /note="similar to E. coli putative enzyme (AAC76255.1); Blastp hit to AAC76255.1 (229 aa), 70% identity in aa 1 - 226" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460101.1" /db_xref="GeneID:1252647" /translation="MSLLARLEQSVHENGGLIVSCQPVPGSPMDKPEIVAAMAQAAAS AGAVAVRIEGIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGADII AFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQKGIEFIGTTLSGYTGP ITPVEPDLAMVTQLSHAGCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITRIEHICQ WFSHAVKR" misc_feature complement(1218266..1218904) /locus_tag="STM1129" /note="putative N-acetylmannosamine-6-phosphate 2-epimerase; Region: PRK01130" /db_xref="CDD:234907" misc_feature complement(order(1218323..1218325,1218386..1218394, 1218473..1218475,1218485..1218487,1218548..1218550, 1218629..1218631,1218722..1218724,1218728..1218730, 1218791..1218793,1218878..1218880,1218884..1218886)) /locus_tag="STM1129" /note="putative active site cavity [active]" /db_xref="CDD:240080" regulatory complement(1218944..1218949) /regulatory_class="ribosome_binding_site" /locus_tag="STM1129" /note="putative RBS for STM1129; RegulonDB:STMS1H001401" gene 1219449..1220609 /locus_tag="STM1130" /db_xref="GeneID:1252648" CDS 1219449..1220609 /locus_tag="STM1130" /note="similar to E. coli orf, hypothetical protein (AAC77266.1); Blastp hit to AAC77266.1 (404 aa), 41% identity in aa 40 - 403" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460102.1" /db_xref="GeneID:1252648" /translation="MGMQMKNFKKMMTLMALCFSVAITTSGYATTLPDIPEPLKNGTG AIDNNGVIYVGLGTAGTSWYKIDLKKQHKDWERIKSFPGGAREQSVSVFLNDELYVFG GVGKKNSESPLQVYSDVYKYSPVKNTWQKVDTISPVGLTGHTGVKLNETMVLITGGVN EHIFDKYFIDIAAAAADESEKNKVIYNYFNKPAKDYFFNKIVFIYNAKENTWKNAGEL PGAGTAGSSSVMGNNFLMLINGELKPGLRTDVIYRAMWDNDKLTWLKNSQLPPSPGEQ QQEGLAGAFSGYSHGVLLVGGGANFPGAKQNYTNGKFYSHEGINKKWRDEVYGLINGH WQYMGKMKQPLGYGVSVSYGDEVFLIGGENAKGKPVSSVTSFTMRDGNLLIK" misc_feature 1219479..1220606 /locus_tag="STM1130" /note="N-acetylneuraminate epimerase; Region: PRK14131" /db_xref="CDD:237617" misc_feature 1219563..1219694 /locus_tag="STM1130" /note="KELCH repeat [structural motif]; Region: KELCH repeat" /db_xref="CDD:276965" misc_feature 1219704..1219853 /locus_tag="STM1130" /note="KELCH repeat [structural motif]; Region: KELCH repeat" /db_xref="CDD:276965" misc_feature 1219866..1220105 /locus_tag="STM1130" /note="KELCH repeat [structural motif]; Region: KELCH repeat" /db_xref="CDD:276965" gene 1220643..1221347 /locus_tag="STM1131" /db_xref="GeneID:1252649" regulatory 1220643..1220648 /regulatory_class="ribosome_binding_site" /locus_tag="STM1131" /note="putative RBS for STM1131; RegulonDB:STMS1H001402" CDS 1220655..1221347 /locus_tag="STM1131" /note="similar to E. coli orf, hypothetical protein (AAC77267.1); Blastp hit to AAC77267.1 (241 aa), 26% identity in aa 4 - 239" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_460103.1" /db_xref="GeneID:1252649" /translation="MKINKYLLGMVSFIAFSSYLQAATLDYRHEYADRTRINKDRIAI IEKLPNGIGFYVDASVKSGGVDGEQDKHLSDLVANAIELGVSYNYKVTDNFVLQPGFI FESGPDTSIYKPYLRGQYNFDSGVYMAGRYRYDYARKTANYSDDEKTNRFDTYIGYVF DELKLEYNFTWMDSDQIKFDNKKTNYEHNVALAWKLNKSFTPYVEVGNVAVRNNTDER QTRYRVGLQYHF" misc_feature 1220721..1221344 /locus_tag="STM1131" /note="Oligogalacturonate-specific porin protein (KdgM); Region: KdgM; pfam06178" /db_xref="CDD:399289" gene 1221618..1222910 /locus_tag="STM1132" /db_xref="GeneID:1252650" regulatory 1221618..1221623 /regulatory_class="ribosome_binding_site" /locus_tag="STM1132" /note="putative RBS for STM1132; RegulonDB:STMS1H001403" CDS 1221630..1222910 /locus_tag="STM1132" /note="similar to E. coli putative transport protein (AAC77235.1); Blastp hit to AAC77235.1 (425 aa), 57% identity in aa 25 - 418" /codon_start=1 /transl_table=11 /product="putative sugar transport protein" /protein_id="NP_460104.1" /db_xref="GeneID:1252650" /translation="MIAKFFPWYSEITRPQKNALFSAWLGYVFDGFDFMLIFYIMYLI KADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGL ASGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAY FMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEEAKLSGPGKHSQSAWSVFS LSMKGLFNRAQFPLTLCVFIVLFSIFGANWPIFGLLPTYLTGEGFDTGVVSNLMTAAA FGTVLGNIVWGLCADRIGLKKTFSIGLLMSFLFIFPLFRIPQDNYLLLGACLFGLMAT NVGVGGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTF IVAFWTATILLIIGLSIPDRLKARRESFQSTKEF" misc_feature 1221630..1222907 /locus_tag="STM1132" /note="MFS transporter; Region: PRK12307" /db_xref="CDD:237051" gene 1222913..1224027 /locus_tag="STM1133" /db_xref="GeneID:1252651" regulatory 1222913..1222918 /regulatory_class="ribosome_binding_site" /locus_tag="STM1133" /note="putative RBS for STM1133; RegulonDB:STMS1H001404" CDS 1222921..1224027 /locus_tag="STM1133" /note="similar to E. coli putative dehydrogenase (AAC77236.1); Blastp hit to AAC77236.1 (377 aa), 62% identity in aa 6 - 371" /codon_start=1 /transl_table=11 /product="putative dehydrogenases and related proteins" /protein_id="NP_460105.1" /db_xref="GeneID:1252651" /translation="MMTKYGVVGTGYFGAELARFMSKVEGAKITAIYDPVNAAPIAKE LNCVATATMEALCSHPDVDCVIIASPNYLHKAPVIAAAKAGKHVFCEKPIALNYQDCK DMVDACKEAGVTFMAGHVMNFFHGVRHAKALIKAGEIGEVTQVHTKRNGFEDVQDEIS WKKIRAKSGGHLYHHIHELDCTLFIMDETPSLVSMAAGNVAHKGEKFGDEDDVVLITL EFESGRFATLQWGSSFHYPEHYVLIEGTTGAILIDMQNTAGYLIKAGKKTHFLVHESQ AEDDDRRNGNISSEMDGAIAYGKPGKRTPMWLSSIMKLEMQYLHDVINGLEPGEEFAK LLTGEAATNAIATADAATLSSNEGRKVKLTEILG" misc_feature 1222921..1223679 /locus_tag="STM1133" /note="Predicted dehydrogenase [General function prediction only]; Region: MviM; COG0673" /db_xref="CDD:440437" gene complement(1224732..1224816) /gene="serX" /locus_tag="STM1134" /db_xref="GeneID:1252652" tRNA complement(1224732..1224816) /gene="serX" /locus_tag="STM1134" /product="tRNA-Ser" /db_xref="GeneID:1252652" gene 1225044..1225993 /gene="ycdW" /locus_tag="STM1135" /db_xref="GeneID:1252653" regulatory 1225044..1225049 /regulatory_class="ribosome_binding_site" /gene="ycdW" /locus_tag="STM1135" /note="putative RBS for ycdW; RegulonDB:STMS1H001406" CDS 1225055..1225993 /gene="ycdW" /locus_tag="STM1135" /note="similar to E. coli putative dehydrogenase (AAC74117.1); Blastp hit to AAC74117.1 (325 aa), 77% identity in aa 14 - 325" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_460106.1" /db_xref="GeneID:1252653" /translation="MEIIFYHPTFNAAWWVNALEKALPHARVREWKVGDNNPADYALV WQPPVEMLAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEY AVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSVGIMGAGVLGAKVAESLQAWGF PLRCWSRSRKSWPGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPD GAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHI AAVTRPAEAIDYISRTITQLEKGEPVTGQVDRARGY" misc_feature 1225055..1225990 /gene="ycdW" /locus_tag="STM1135" /note="glyoxylate/hydroxypyruvate reductase GhrA; Region: ghrA; PRK15469" /db_xref="CDD:185366" misc_feature order(1225190..1225192,1225244..1225252,1225337..1225339, 1225733..1225735,1225877..1225879) /gene="ycdW" /locus_tag="STM1135" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:240641" misc_feature order(1225247..1225252,1225319..1225321,1225337..1225339, 1225349..1225351,1225481..1225495,1225547..1225558, 1225562..1225564,1225643..1225651,1225661..1225666, 1225727..1225735,1225805..1225810,1225877..1225879, 1225883..1225888,1225982..1225984) /gene="ycdW" /locus_tag="STM1135" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:240641" misc_feature order(1225346..1225348,1225352..1225360,1225364..1225369, 1225376..1225381,1225388..1225390,1225394..1225396, 1225403..1225408,1225412..1225417,1225427..1225432, 1225436..1225438,1225445..1225447,1225454..1225456, 1225526..1225528,1225799..1225801,1225811..1225813, 1225820..1225828,1225832..1225834,1225844..1225849, 1225853..1225855,1225862..1225864,1225868..1225876, 1225880..1225885,1225895..1225897) /gene="ycdW" /locus_tag="STM1135" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:240641" gene 1226065..1226814 /gene="ycdX" /locus_tag="STM1136" /db_xref="GeneID:1252654" regulatory 1226065..1226070 /regulatory_class="ribosome_binding_site" /gene="ycdX" /locus_tag="STM1136" /note="putative RBS for ycdX; RegulonDB:STMS1H001407" CDS 1226077..1226814 /gene="ycdX" /locus_tag="STM1136" /note="related to hydrolases of the PHP family; similar to E. coli orf, hypothetical protein (AAC74118.1); Blastp hit to AAC74118.1 (245 aa), 89% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="putative Histidinol phosphatase" /protein_id="NP_460107.1" /db_xref="GeneID:1252654" /translation="MYPVDLHMHTVASTHAYSTLSDYIAEAKRKGIKLFAITDHGPDM EDAPHHWHFINMRIWPRLVDGVGILRGIEANIKNINGEIDCSGKMFDSLDLIIAGFHE PVFAPHDKETNTQAMIATIASGKVHIISHPGNPKYPVEVKAIAQAAAKHHVALEINNS SFLHSRKGSEDNCRAVAAAVRDAGGWVALGSDSHTAFTLGDFTECRKILDAVNFPEDR ILNVSPQRLLAFLESRGMAPVPEFAEL" misc_feature 1226077..1226811 /gene="ycdX" /locus_tag="STM1136" /note="putative hydrolase; Validated; Region: PRK09248" /db_xref="CDD:236429" gene 1226824..1227392 /gene="ycdY" /locus_tag="STM1137" /db_xref="GeneID:1252655" regulatory 1226824..1226829 /regulatory_class="ribosome_binding_site" /gene="ycdY" /locus_tag="STM1137" /note="putative RBS for ycdY; RegulonDB:STMS1H001408" CDS 1226838..1227392 /gene="ycdY" /locus_tag="STM1137" /note="similar to E. coli putative oxidoreductase component (AAC74119.1); Blastp hit to AAC74119.1 (184 aa), 86% identity in aa 1 - 184" /codon_start=1 /transl_table=11 /product="putative oxidoreductase component" /protein_id="NP_460108.1" /db_xref="GeneID:1252655" /translation="MNEFSILCRVLGSLFYRQPQDPLLVPLFTLIREGKLAANWPLEQ DDMLARLQKSCDITQISTDYNALFVGEECAVAPYRSAWVEGAEESEVRAFLTSRGMPL ADTPADHIGTLLLAASWLEDQSAEDESEALETLFADYLLPWCNTFLGKVEAHAVTPFW RTLAPLTRDAIGAMWDELQEEDEE" misc_feature 1226838..1227389 /gene="ycdY" /locus_tag="STM1137" /note="Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation [Posttranslational modification, protein turnover, chaperones]; Region: TorD; COG3381" /db_xref="CDD:442608" gene 1227445..1227975 /gene="ycdZ" /locus_tag="STM1138" /db_xref="GeneID:1252656" CDS 1227445..1227975 /gene="ycdZ" /locus_tag="STM1138" /note="hypothetical protein in phoH-csgG intergenic region. (SW:YCDZ_SALTY)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460109.1" /db_xref="GeneID:1252656" /translation="MCVISLMCRFSVMMRAMNILLSIAITTGILSGIWGWGAVSLGLL SWAGFLGCTAYFACPQGGFKGLLISACTLLSGMVWALVIIHGSALAPHLEIVSYVLTG IVAFLMCIQAKQLLLSFVPGTFIGACATFAGQGDWRLVLPSLALGLIFGYAMKNSGLW LASRREQHSANTAVTK" misc_feature 1227520..1227918 /gene="ycdZ" /locus_tag="STM1138" /note="Protein of unknown function (DUF1097); Region: DUF1097; pfam06496" /db_xref="CDD:428977" gene complement(1228014..1228860) /gene="csgG" /locus_tag="STM1139" /db_xref="GeneID:1252657" CDS complement(1228014..1228847) /gene="csgG" /locus_tag="STM1139" /note="curli production assembly/transport component CSGG precursor. (SW:CSGG_SALTY)" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator in curly assembly/transport, 2nd curli operon" /protein_id="NP_460110.1" /db_xref="GeneID:1252657" /translation="MPRLLILVAVLLLSGCLTAPPKQAAKPTLMPRAQSYKDLTHLPA PTGKIFVSVYNIQDETGQFKPYPASNFSTAVPQSATAMLVTALKDSRWFIPLERQGLQ NLLNERKIIRAAQENGTVAMNNRIPLQSLTAANIMVEGSIIGYESNVKSGGVGARYFG IGADTQYQLDQIAVNLRVVNVSTGEILSSVNTSKTILSYEVQAGVFRFIDYQRLLEGE IGYTSNEPVMLCLMSAIETGVIFLINDGIDRGLWDLQNKADRQNDILVKYRELSVPPE S" misc_feature complement(1228017..1228847) /gene="csgG" /locus_tag="STM1139" /note="curli production assembly/transport protein CsgG; Provisional; Region: PRK15184" /db_xref="CDD:185106" regulatory complement(1228855..1228860) /regulatory_class="ribosome_binding_site" /gene="csgG" /locus_tag="STM1139" /note="putative RBS for csgG; RegulonDB:STMS1H001409" gene complement(1228874..1229302) /gene="csgF" /locus_tag="STM1140" /db_xref="GeneID:1252658" CDS complement(1228874..1229290) /gene="csgF" /locus_tag="STM1140" /note="curli production assembly/transport component CSGF precursor. (SW:CSGF_SALTY)" /codon_start=1 /transl_table=11 /product="curli production assembly/transport component, 2nd curli operon" /protein_id="NP_460111.1" /db_xref="GeneID:1252658" /translation="MRVKHAVVLLMLFSPLTWAGNMTFQFRNPNFGGNPNNGSFLLNS AQAQNSYKDPAYDNDFGIETPSALDNFTQAIQSQILGGLLTNINTGKPGRMVTNDFII DIANRDGQLQLNVTDRKTGRTSTIEVSGLQTQSTDF" misc_feature complement(1228877..1229290) /gene="csgF" /locus_tag="STM1140" /note="curli production assembly/transport protein CsgF; Region: PRK10050" /db_xref="CDD:182210" regulatory complement(1229297..1229302) /regulatory_class="ribosome_binding_site" /gene="csgF" /locus_tag="STM1140" /note="putative RBS for csgF; RegulonDB:STMS1H001410" gene complement(1229317..1229726) /gene="csgE" /locus_tag="STM1141" /db_xref="GeneID:1252659" CDS complement(1229317..1229712) /gene="csgE" /locus_tag="STM1141" /note="curli production assembly/transport component CSGE precursor. (SW:CSGE_SALTY)" /codon_start=1 /transl_table=11 /product="curli production assembly/transport component, 2nd curli operon" /protein_id="NP_460112.1" /db_xref="GeneID:1252659" /translation="MKRYLTWIVAAELLFATGNLHANEVEVEVPGLLTDHTVSSIGHE FYRAFSDKWESEYTGNLTINERPSARWGSWITITVNQDVIFQTFLFPMKRDFEKTVVF ALAQTEEALNRRQIDQTLLSTSDLARDEF" misc_feature complement(1229320..1229712) /gene="csgE" /locus_tag="STM1141" /note="curli production assembly/transport protein CsgE; Region: PRK10386" /db_xref="CDD:236678" gene complement(1229717..1230380) /gene="csgD" /locus_tag="STM1142" /db_xref="GeneID:1252660" CDS complement(1229717..1230367) /gene="csgD" /locus_tag="STM1142" /note="LuxR/UhpA family member; probable csgAB operon transcriptional regulatory protein. (SW:CSGD_SALTY)" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_460113.1" /db_xref="GeneID:1252660" /translation="MFNEVHSSHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQ RSLEDISAGCIVLMDMMEADKKLIHYWQDNLSRKNNNIKTLLLNTPDDYPYREIENWP HINGVFYATEDQEHVVSGLQGILRGECYFSQKLASYLITHSGNYRYNSTESALLTHRE KEILNKLRIGASNNEIARSLFISENTVKTHLYNLFKKIAVKNRTQAVSWANDNLRR" misc_feature complement(1229720..1230367) /gene="csgD" /locus_tag="STM1142" /note="transcriptional regulator CsgD; Region: PRK10100" /db_xref="CDD:182241" regulatory complement(1229721..1229726) /regulatory_class="ribosome_binding_site" /gene="csgE" /locus_tag="STM1141" /note="putative RBS for csgE; RegulonDB:STMS1H001411" regulatory complement(1230375..1230380) /regulatory_class="ribosome_binding_site" /gene="csgD" /locus_tag="STM1142" /note="putative RBS for csgD; RegulonDB:STMS1H001412" gene 1231000..1231577 /gene="csgB" /locus_tag="STM1143" /db_xref="GeneID:1252661" regulatory 1231000..1231008 /regulatory_class="minus_35_signal" /gene="csgB" /locus_tag="STM1143" /note="putative -35_signal for csgB; RegulonDB:STMLTH004473" regulatory 1231024..1231032 /regulatory_class="minus_10_signal" /gene="csgB" /locus_tag="STM1143" /note="putative -10_signal for csgB; RegulonDB:STMLTH004473" regulatory 1231110..1231115 /regulatory_class="ribosome_binding_site" /gene="csgB" /locus_tag="STM1143" /note="putative RBS for csgB; RegulonDB:STMS1H001413" CDS 1231122..1231577 /gene="csgB" /locus_tag="STM1143" /note="nucleator for assembly of adhesive surface organelles; minor curlin subunit precursor (fimbrin SEF17 minor subunit). (SW:CSGB_SALTY)" /codon_start=1 /transl_table=11 /product="minor curlin subunit precursor" /protein_id="NP_460114.1" /db_xref="GeneID:1252661" /translation="MKNKLLFMMLTILGAPGIATATNYDLARSEYNFAVNELSKSSFN QAAIIGQVGTDNSARVRQEGSKLLSVISQEGGNNRAKVDQAGNYNFAYIEQTGNANDA SISQSAYGNSAAIIQKGSGNKANITQYGTQKTAVVVQKQSHMAIRVTQR" misc_feature 1231122..1231574 /gene="csgB" /locus_tag="STM1143" /note="curlin minor subunit CsgB; Provisional; Region: csgB; PRK10101" /db_xref="CDD:182242" gene 1231605..1232074 /gene="csgA" /locus_tag="STM1144" /db_xref="GeneID:1252662" regulatory 1231605..1231610 /regulatory_class="ribosome_binding_site" /gene="csgA" /locus_tag="STM1144" /note="putative RBS for csgA; RegulonDB:STMS1H001414" CDS 1231619..1232074 /gene="csgA" /locus_tag="STM1144" /note="coiled surface structures; cryptic; major curlin subunit precursor (fimbrin SEF17). (SW:CSGA_SALTY)" /codon_start=1 /transl_table=11 /product="curlin major subunit" /protein_id="NP_460115.1" /db_xref="GeneID:1252662" /translation="MKLLKVAAFAAIVVSGSALAGVVPQWGGGGNHNGGGNSSGPDST LSIYQYGSANAALALQSDARKSETTITQSGYGNGADVGQGADNSTIELTQNGFRNNAT IDQWNAKNSDITVGQYGGNNAALVNQTASDSSVMVRQVGFGNNATANQY" misc_feature 1231619..1232071 /gene="csgA" /locus_tag="STM1144" /note="major curlin subunit CsgA; Region: csgA; PRK10051" /db_xref="CDD:182211" gene 1232127..1232462 /gene="csgC" /locus_tag="STM1145" /db_xref="GeneID:1252663" regulatory 1232127..1232132 /regulatory_class="ribosome_binding_site" /gene="csgC" /locus_tag="STM1145" /note="putative RBS for csgC; RegulonDB:STMS1H001415" CDS 1232136..1232462 /gene="csgC" /locus_tag="STM1145" /note="putative curlin production protein CSGC precursor. (SW:CSGC_SALTY)" /codon_start=1 /transl_table=11 /product="putative curli production protein" /protein_id="NP_460116.1" /db_xref="GeneID:1252663" /translation="MHTLLLLAALSNQITFTTTQQGDIYTVIPQVTLNEPCVCQVQIL SVRDGVGGQSHTQQKQTLSLPANQPIELSRLSVNISSEDSVKIIVTVSDGQSLHLSQQ WPPSAQ" misc_feature 1232136..1232459 /gene="csgC" /locus_tag="STM1145" /note="curli assembly protein CsgC; Provisional; Region: csgC; PRK10102" /db_xref="CDD:182243" gene 1232582..1232913 /gene="ymdA" /locus_tag="STM1146" /db_xref="GeneID:1252664" regulatory 1232582..1232587 /regulatory_class="ribosome_binding_site" /gene="ymdA" /locus_tag="STM1146" /note="putative RBS for ymdA; RegulonDB:STMS1H001416" CDS 1232593..1232913 /gene="ymdA" /locus_tag="STM1146" /note="hypothetical protein in csgC-mdoG intergenic region precursor. (SW:YMDA_SALTY)" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460117.1" /db_xref="GeneID:1252664" /translation="MSVIKKNIPAIGLCICAFFIHSAVGQQTVQGGVIHFRGAIVEPL CDISTHAENIDLTCLREGKKQMHRIDLRQASGLPQDIQSIATVRLHYLDAQKSLAVMN IEYR" misc_feature 1232602..>1232763 /gene="ymdA" /locus_tag="STM1146" /note="Pilin (type 1 fimbrial protein) [Cell motility]; Region: FimA; COG3539" /db_xref="CDD:442760" gene 1232988..1233541 /locus_tag="STM1147" /db_xref="GeneID:1252665" regulatory 1232988..1232993 /regulatory_class="ribosome_binding_site" /locus_tag="STM1147" /note="putative RBS for STM1147; RegulonDB:STMS1H001417" CDS 1233002..1233541 /locus_tag="STM1147" /note="related to the C-terminal domain of histone macroH2A1; similar to E. coli putative polyprotein (AAC74129.1); Blastp hit to AAC74129.1 (177 aa), 76% identity in aa 1 - 177" /codon_start=1 /transl_table=11 /product="putative ACR protein" /protein_id="NP_460118.1" /db_xref="GeneID:1252665" /translation="MTSRLQVIQGDITQLSVDAIVNAANASLMGGGGVDGAIHRAAGP ALLDACKLIRQQQGECQTGHAVITPAGKLSAKAVIHTVGPVWRGGEHQEAELLEEAYR NCLLLAEANHFRSIAFPAISTGVYGYPRAQAAEVAVRTVSDFITRYALPEQVYFVCYD EETARLYARLLTQQGDDPA" misc_feature 1233002..1233532 /locus_tag="STM1147" /note="ADP-ribose-binding protein; Region: PRK00431" /db_xref="CDD:234759" misc_feature order(1233029..1233037,1233068..1233076,1233089..1233106, 1233110..1233112,1233119..1233121,1233248..1233250, 1233254..1233256,1233356..1233379,1233470..1233472, 1233476..1233481,1233488..1233490) /locus_tag="STM1147" /note="active site" /db_xref="CDD:438955" gene 1233480..1234964 /gene="ymdC" /locus_tag="STM1148" /db_xref="GeneID:1252666" CDS 1233480..1234964 /gene="ymdC" /locus_tag="STM1148" /note="similar to E. coli putative synthase (AAC74130.1); Blastp hit to AAC74130.1 (493 aa), 79% identity in aa 2 - 493" /codon_start=1 /transl_table=11 /product="putative phospholipase" /protein_id="NP_460119.3" /db_xref="GeneID:1252666" /translation="MKKLPGFTQDYLLSKATTLPDKTRLERAVEPLCARHPGECGILA LDNSLDAFAARYRLTEMAARTLDVQYYIWEDDMSGRLLFSVLLSAAKRGVHVRLLLDD NNTPGLDDTLRLLDSHPNIEVRLFNPFSFRTLRALGYLTDFARLNRRMHNKSYTADGV VTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLS LSEQELTQRIELPESWYNDEITRRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPS KGEGKAQRHSLLPQRLFDVMGSPTERIDIISAYFVPTRAGVAQLLNLVRKGVKIAILT NSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREHETAVHDRGLTGNSGSSLHAK TFSIDGSKVFIGSLNFDPRSTLLNTEMGFVIESETLATLIHKRFTQSQRDAAWQLRLD RWGRINWIDRQQEEEKVLKKEPATRFWQRVLVRLAAILPVEWLL" misc_feature 1233612..1234094 /gene="ymdC" /locus_tag="STM1148" /note="Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_1; cd09111" /db_xref="CDD:197210" misc_feature order(1233930..1233932,1233936..1233938,1233975..1233977, 1233981..1233983,1234029..1234031) /gene="ymdC" /locus_tag="STM1148" /note="putative active site [active]" /db_xref="CDD:197210" misc_feature 1233930..1233932 /gene="ymdC" /locus_tag="STM1148" /note="catalytic site [active]" /db_xref="CDD:197210" misc_feature 1234290..1234949 /gene="ymdC" /locus_tag="STM1148" /note="Putative catalytic domain, repeat 2, of Escherichia coli uncharacterized protein ymdC and similar proteins; Region: PLDc_ymdC_like_2; cd09113" /db_xref="CDD:197212" misc_feature order(1234647..1234649,1234653..1234655,1234692..1234694, 1234698..1234700,1234731..1234733) /gene="ymdC" /locus_tag="STM1148" /note="putative active site [active]" /db_xref="CDD:197212" misc_feature 1234647..1234649 /gene="ymdC" /locus_tag="STM1148" /note="catalytic site [active]" /db_xref="CDD:197212" gene complement(1234981..1236153) /gene="mdoC" /locus_tag="STM1149" /db_xref="GeneID:1252667" CDS complement(1234981..1236135) /gene="mdoC" /locus_tag="STM1149" /note="required for succinyl substitution of glucan backbone of OPG (osmoregulated periplasmic glucan); similar to E. coli orf, hypothetical protein (AAC74131.1); Blastp hit to AAC74131.1 (385 aa), 82% identity in aa 1 - 379" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="NP_460120.1" /db_xref="GeneID:1252667" /translation="MSSVPAPREYFLDSIRAWLMLLGIPFHISLIYSTHSWHVNSAAP SWWLTLFNDFIHAFRMQVFFVISGYFSYMLFLRYPLKHWWKVRVERVGIPMLTAIPLL TLPQFILLQYVKEKTENWPTLSAYEKYNTLAWELISHLWFLLVLVILTTVSIGIFTWF QKRQETSKPRPAAISLAKLSLIFFLLGVAYAAIRRIIFIVYPAILSDGMFNFIVMQTL FYVPFFILGALAFIHPDLKARFTTPSRGCTLGAAVAFIAYLLNQRYGSGDAWMYETES VITMVMGLWMVNVVFSLGHRLLNFQSARVTYFVNASLFIYLVHHPLTLFFGAYITPHI SSNLIGFLCGLIFVMGIALILYEIHLRIPLLKFLFSGKPPVKRESRATIG" misc_feature complement(1235014..1236135) /gene="mdoC" /locus_tag="STM1149" /note="glucans biosynthesis protein MdoC; Region: opgC; PRK03854" /db_xref="CDD:235167" regulatory complement(1236148..1236153) /regulatory_class="ribosome_binding_site" /gene="mdoC" /locus_tag="STM1149" /note="putative RBS for mdoC; RegulonDB:STMS1H001418" gene 1236311..1237942 /gene="mdoG" /locus_tag="STM1150" /db_xref="GeneID:1252668" regulatory 1236311..1236319 /regulatory_class="minus_35_signal" /gene="mdoG" /locus_tag="STM1150" /note="putative -35_signal for mdoG; RegulonDB:STMLTH004474" regulatory 1236335..1236343 /regulatory_class="minus_10_signal" /gene="mdoG" /locus_tag="STM1150" /note="putative -10_signal for mdoG; RegulonDB:STMLTH004474" CDS 1236407..1237942 /gene="mdoG" /locus_tag="STM1150" /note="similar to E. coli periplasmic glucans biosynthesis protein (AAC74132.1); Blastp hit to AAC74132.1 (511 aa), 93% identity in aa 1 - 511" /codon_start=1 /transl_table=11 /product="periplasmic glucans biosynthesis protein" /protein_id="NP_460121.1" /db_xref="GeneID:1252668" /translation="MMKMRWLGAAIMLTLYASSSWAFSIDDVAKQAQSLAGKGYEAPK SNLPSVFRDMKYADYQQIQFNSDKAYWNNLKTPFKLEFYHQGMYFDTPVKINEVTATT VKRIKYSPDYFNFGNVQHDKDTVKDLGFAGFKVLYPINSKDKNDEIVSMLGASYFRVI GAGQVYGLSARGLAIDTALPSGEEFPRFREFWIERPKPTDKRLTVYALLDSPRATGAY RFVIIPGRDTVVDVQSKVYLRDKVGKLGVAPLTSMFLFGPNQPSPTTNYRPELHDSNG LSIHAGNGEWIWRPLNNPKHLAVSSYAMENPQGFGLLQRGREFSRFEDLDDRYDLRPS AWITPKGDWGKGKVELVEIPTNDETNDNIVAYWTPDQLPEPGKEMNFKYTLTFSRDED KLHAPDNAWVLQTRRSTGDVKQSNLIRQPDGTIAFVVDFVGADMKKLPPDTPVAAQTS IGDNGEIVDSNVRYNPVTKGWRLMLRVKVKDAKKTTEMRAALVNADQTLSETWSYQLP ANE" misc_feature 1236407..1237936 /gene="mdoG" /locus_tag="STM1150" /note="glucan biosynthesis protein G; Provisional; Region: mdoG; PRK13274" /db_xref="CDD:237328" gene 1237935..1240478 /gene="mdoH" /locus_tag="STM1151" /db_xref="GeneID:1252669" CDS 1237935..1240478 /gene="mdoH" /locus_tag="STM1151" /note="synthesis of membrane-derived oligosaccharide (MDO)/synthesis of OPGs (osmoregulated periplasmic glucans); similar to E. coli membrane glycosyltransferase; synthesis of membrane-derived oligosaccharide (MDO) (AAC74133.1); Blastp hit to AAC74133.1 (847 aa), 94% identity in aa 1 - 840" /codon_start=1 /transl_table=11 /product="membrane glycosyltransferase" /protein_id="NP_460122.1" /db_xref="GeneID:1252669" /translation="MNKTTEYIDALLLSEREKAALPKTDIRAVHQALDAEHRTYSRED DSPQGSVKARLEHAWPDSLAKGQLIKDDEGRDQLQAMPKATRSSMFPDPWRTNPVGRF WDRLRGRDVTPRYVSRLTKEEQASEQKWRTVGTIRRYILLILTLAQTVVATWYMKTIL PYQGWALINPMDMVGQDIWVSFMQLLPYMLQTGILILFAVLFCWVSAGFWTALMGFLQ LLIGRDKYSISASTVGDEPLNPEHRTALIMPICNEDVSRVFAGLRATWESVKATGNAA HFDVYILSDSYNPDICVAEQKAWMELIAEVQGEGQIFYRRRRRRMKRKSGNIDDFCRR WGNQYSYMVVLDADSVMSGECLSGLVRLMEANPNAGIIQSSPKASGMDTLYARCQQFA TRVYGPLFTAGLHFWQLGESHYWGHNAIIRVKPFIEHCALAPLPGEGSFAGSILSHDF VEAALMRRAGWGVWIAYDLPGSYEELPPNLLDELKRDRRWCHGNLMNFRLFLVKGMHP VHRAVFLTGVMSYLSAPLWFMFLALSTALQVVHALTEPQYFLQPRQLFPVWPQWRPEL AIALFASTMVLLFLPKLLSIMLIWCKGTKEYGGFWRVTLSLLLEVLFSVLLAPVRMLF HTVFVVSAFLGWEVVWNSPQRDDDSTPWGEAFMRHGSQLLLGLVWAVGMAWLDLRFLF WLAPIVFSLILSPFVSVISSRSTVGLRTKRWKLFLIPEEYSPPQVLVDTDKYLEMNRR RILDDGFMHAVFNPSLNALATAMATARHRASKVLEIARDRHVEQALNETPEKLNRDRR LVLLSDPVTMARLHYRVWNAPERYSSWVNHYQSLVLNPQALQGRTSSAR" misc_feature 1238316..1240382 /gene="mdoH" /locus_tag="STM1151" /note="Membrane glycosyltransferase [Cell wall/membrane/envelope biogenesis, Carbohydrate transport and metabolism]; Region: MdoH; COG2943" /db_xref="CDD:442186" gene 1240542..1240779 /gene="yceK" /locus_tag="STM1152" /db_xref="GeneID:1252670" regulatory 1240542..1240547 /regulatory_class="ribosome_binding_site" /gene="yceK" /locus_tag="STM1152" /note="putative RBS for yceK; RegulonDB:STMS1H001419" CDS 1240552..1240779 /gene="yceK" /locus_tag="STM1152" /note="similar to E. coli orf, hypothetical protein (AAC74134.1); Blastp hit to AAC74134.1 (75 aa), 86% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460123.1" /db_xref="GeneID:1252670" /translation="MRIFAVSIMVITLSGCGSIISRTIPGQGHGNQYYPGVQWDMRDS AWRYITILDLPFSLIFDTLLLPLDIHHGPYE" misc_feature 1240552..1240776 /gene="yceK" /locus_tag="STM1152" /note="YceK/YidQ family lipoprotein; Region: PRK10175" /db_xref="CDD:182286" gene complement(1240780..1241167) /gene="msyB" /locus_tag="STM1153" /db_xref="GeneID:1252671" CDS complement(1240780..1241154) /gene="msyB" /locus_tag="STM1153" /note="similar to E. coli acidic protein suppresses mutants lacking function of protein export (AAC74135.1); Blastp hit to AAC74135.1 (125 aa), 92% identity in aa 2 - 125" /codon_start=1 /transl_table=11 /product="acidic protein suppresses mutants lacking function of protein export" /protein_id="NP_460124.1" /db_xref="GeneID:1252671" /translation="MTMYATLEEAIDAAREEFLADHPGLEQDEANVQQFNVQKYVLQD GDIMWQVEFFADEGEDGECLPMLSGEAAQSVFDGDYDEIEIRQEWQEENTLHEWDEGE FQLEPPLDTEEGRTAADEWDER" misc_feature complement(1240783..1241154) /gene="msyB" /locus_tag="STM1153" /note="secY/secA suppressor protein; Provisional; Region: PRK11467" /db_xref="CDD:183149" regulatory complement(1241162..1241167) /regulatory_class="ribosome_binding_site" /gene="msyB" /locus_tag="STM1153" /note="putative RBS for msyB; RegulonDB:STMS1H001420" gene complement(1241236..1242460) /gene="yceE" /locus_tag="STM1154" /db_xref="GeneID:1252672" CDS complement(1241236..1242450) /gene="yceE" /locus_tag="STM1154" /note="similar to E. coli putative transport protein (AAC74137.1); Blastp hit to AAC74137.1 (408 aa), 27% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_460125.1" /db_xref="GeneID:1252672" /translation="MSPSDVPINWKRNLTVTWLGCFLTGAAFSLVMPFLPLYVEQLGV TGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMAIVMLLMGMA QNIWQFLILRALLGLLGGFIPNANALIATQVPRHKSGWALGTLSTGGVSGALLGPLAG GLLADHYGLRPVFFITASVLFICFLLTFFFIRENFLPVSKKEMLHVREVVASLKNPRL VLSLFVTTLIIQVATGSIAPILTLYVRELAGDVSNIAFISGMIASVPGVAALLSAPRL GKLGDRIGPEKILIVALIISVLLLIPMSFVQTPWQLALLRFLLGAADGALLPAVQTLL VYNSTNQIAGRIFSYNQSFRDIGNVTGPLMGAAISASYGFRAVFCVTAGVVLFNAIYS WNSLRRRRLAIE" misc_feature complement(1241245..1242450) /gene="yceE" /locus_tag="STM1154" /note="multidrug efflux MFS transporter MdtG; Region: PRK09874" /db_xref="CDD:182127" regulatory complement(1242455..1242460) /regulatory_class="ribosome_binding_site" /gene="yceE" /locus_tag="STM1154" /note="putative RBS for yceE; RegulonDB:STMS1H001421" gene complement(1242605..1243535) /gene="htrB" /locus_tag="STM1155" /db_xref="GeneID:1252673" CDS complement(1242605..1243525) /gene="htrB" /locus_tag="STM1155" /EC_number="2.3.1.-" /note="similar to E. coli heat shock protein (AAC74138.1); Blastp hit to AAC74138.1 (306 aa), 83% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="lauroyl/myristoyl acyltransferase involved in lipid A biosynthesis" /protein_id="NP_460126.1" /db_xref="GeneID:1252673" /translation="MTKLPKFSVALLHPRYWLTWLGIGALWLVVQLPYPVIYKLGCAL GHLARRVMKRRAKIAYRNLELCFPEMSAQERHTMVVKNFESVGMGVMETGMAWFWPDR RVNRWMEASGLEHIREVKAQGLGFILVGIHFLTLEFGARMFGMHNPGIGVYRPNDNPL LDWLQTWGRLRSNKSMLDRKDLKGMVKALKSGELIWYAPDHDYGPRASVFVPLFAVDQ AATTSGTWMLARMSKACIIPFVPRRKPDGKGYELIILPAEYSPPLESAEATAAWMNKI VEQCIMMAPEQYMWLHRRFKTRPEGVPSRY" misc_feature complement(1242608..1243525) /gene="htrB" /locus_tag="STM1155" /note="lipid A biosynthesis lauroyl acyltransferase; Provisional; Region: PRK06860" /db_xref="CDD:235880" misc_feature complement(order(1242917..1242925,1243058..1243069, 1243115..1243117,1243121..1243123,1243130..1243132)) /gene="htrB" /locus_tag="STM1155" /note="putative acyl-acceptor binding pocket [active]" /db_xref="CDD:153246" regulatory complement(1243530..1243535) /regulatory_class="ribosome_binding_site" /gene="htrB" /locus_tag="STM1155" /note="putative RBS for htrB; RegulonDB:STMS1H001422" gene 1243730..1244797 /gene="yceA" /locus_tag="STM1156" /db_xref="GeneID:1252674" regulatory 1243730..1243735 /regulatory_class="ribosome_binding_site" /gene="yceA" /locus_tag="STM1156" /note="putative RBS for yceA; RegulonDB:STMS1H001423" CDS 1243745..1244797 /gene="yceA" /locus_tag="STM1156" /note="similar to E. coli orf, hypothetical protein (AAC74139.1); Blastp hit to AAC74139.1 (350 aa), 88% identity in aa 1 - 350" /codon_start=1 /transl_table=11 /product="putative enzyme related to sulfur transferases" /protein_id="NP_460127.1" /db_xref="GeneID:1252674" /translation="MPVLHNRISNDELKAKMLAESEPRTTISFYKYFTIASPQQTRDA LYQVFTALDVFGRVYLAHEGINAQISVPQSKLETFRQQLYTFDPALDGVRLNIALEDD GKSFWVLRMKVRDRIVADGIDDPTFDASNVGDYLKAADVNAMLDDPDAVFIDMRNHYE YEVGHFENALEIPADTFREQLPKAVEMLREHADKKIVMYCTGGIRCEKASAWMKHNGF NKVWHIEGGIIEYARRARAQGLPVRFIGKNFVFDERMGERISDEVIAHCHQCGASCDS HTNCKNDGCHLLFIQCPQCASKFNGCCSEQCCEELALPEEEQRRRRAGRENGNKIFNK SRGRLNSKLSIPDPAE" misc_feature 1243805..1244755 /gene="yceA" /locus_tag="STM1156" /note="rhodanese-related sulfurtransferase; Region: PRK00142" /db_xref="CDD:234663" misc_feature 1244342..1244344 /gene="yceA" /locus_tag="STM1156" /note="active site residue [active]" /db_xref="CDD:238776" gene complement(1244849..1245437) /gene="yceI" /locus_tag="STM1157" /db_xref="GeneID:1252675" CDS complement(1244849..1245424) /gene="yceI" /locus_tag="STM1157" /note="similar to E. coli orf, hypothetical protein (AAC74140.1); Blastp hit to AAC74140.1 (191 aa), 91% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="putative secreted protein" /protein_id="NP_460128.1" /db_xref="GeneID:1252675" /translation="MKKNLLGFTLASLLFTTGSAVAAEYKIDKEGQHAFVNFRIQHLG YSWLYGTFKDFDGTFTFDEKNPSADKVNVTINTNSVDTNHAERDKHLRSAEFLNVAKF PQATFTSTSVKKEGDELDITGNLTLNGVTKPVTLEAKLMGQGDDPWGGKRAGFEAEGK IKLKDFNITTDLGPASQEVELIISVEGVQQK" misc_feature complement(1244855..1245424) /gene="yceI" /locus_tag="STM1157" /note="YceI family protein; Region: PRK03757" /db_xref="CDD:179642" gene complement(1245421..1246004) /locus_tag="STM1158" /db_xref="GeneID:1252676" CDS complement(1245421..1245993) /locus_tag="STM1158" /note="similar to E. coli putative cytochrome (AAC74141.1); Blastp hit to AAC74141.1 (188 aa), 77% identity in aa 1 - 187" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460129.1" /db_xref="GeneID:1252676" /translation="MQFKNTPQRYGVVSAALHWLTALVVYGMFALGLWMVTLSYYDGW YHQAPEIHKSIGILLMMALIVRIIWRLYSPPPVALTSYSRLTRIGAAAGHLLLYLLLF AIIISGYLISTADGKPISVFGWFEIPATLTDAGAQADIAGTLHLWFAWSLVIISLSHG VMALKHHFIDKDDTLKRMTGMSSSDYGAQK" misc_feature complement(1245454..1245993) /locus_tag="STM1158" /note="Cytochrome b561 [Energy production and conversion]; Region: CybB; COG3038" /db_xref="CDD:442272" regulatory complement(1245432..1245437) /regulatory_class="ribosome_binding_site" /locus_tag="STM1158" /note="putative RBS for yceI; RegulonDB:STMS1H001424" regulatory complement(1245999..1246004) /regulatory_class="ribosome_binding_site" /locus_tag="STM1158" /note="putative RBS for STM1158; RegulonDB:STMS1H001425" gene complement(1246256..1246379) /gene="yceO" /locus_tag="STM1159" /db_xref="GeneID:1252677" CDS complement(1246256..1246369) /gene="yceO" /locus_tag="STM1159" /note="similar to E. coli orf, hypothetical protein (AAC74142.1); Blastp hit to AAC74142.1 (46 aa), 64% identity in aa 10 - 46" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460130.1" /db_xref="GeneID:1252677" /translation="MRRLFHFLMNNIREHFMLYVILWSLLAVMDIVYLLFF" misc_feature complement(1246262..1246369) /gene="yceO" /locus_tag="STM1159" /note="Protein of unknown function (DUF2770); Region: DUF2770; pfam10968" /db_xref="CDD:431565" regulatory complement(1246374..1246379) /regulatory_class="ribosome_binding_site" /gene="yceO" /locus_tag="STM1159" /note="putative RBS for yceO; RegulonDB:STMS1H001426" gene complement(1246410..1247537) /gene="solA" /locus_tag="STM1160" /db_xref="GeneID:1252678" CDS complement(1246410..1247528) /gene="solA" /locus_tag="STM1160" /EC_number="1.5.3.1" /note="similar to E. coli sarcosine oxidase-like protein (AAC74143.1); Blastp hit to AAC74143.1 (372 aa), 84% identity in aa 1 - 371" /codon_start=1 /transl_table=11 /product="putative sarcosine oxidase" /protein_id="NP_460131.1" /db_xref="GeneID:1252678" /translation="MKYDLIIIGSGSVGAAAGYYATRAGLKVLMTDAHMPPHQQGSHH GDTRLIRHAYGEGEKYVPLVLRAQTLWDELSTHNEEPIFVRSGVVNLGPADSAFLANV ARSAQQWQLNVERLDATALMTRWPEIRVPDNYIGLFEADSGFLRSELAITTWLRLARE AGCAQLFNSPVSHIHHDDNGVTIETSEGCYHASKALISAGTWVKALVPELPVQPVRKV FAWFKADGRYSTKNRFPAFTGEMPNGDQYYGFPAENDELKIGKHNGGQLIQAPEERKP FAAVASDGAEAFPFLRNVLPGIGGCLHGAACTYDNSPDEDFIIDTLPGHENTLVITGL SGHGFKFAPVLGEIAADFALGKTPSFDLTPFRLSRFSQ" misc_feature complement(1246413..1247528) /gene="solA" /locus_tag="STM1160" /note="N-methyl-L-tryptophan oxidase; Region: solA; PRK11259" /db_xref="CDD:236887" regulatory complement(1247532..1247537) /regulatory_class="ribosome_binding_site" /gene="solA" /locus_tag="STM1160" /note="putative RBS for solA; RegulonDB:STMS1H001427" gene complement(1247641..1247907) /gene="yceP" /locus_tag="STM1161" /db_xref="GeneID:1252679" CDS complement(1247641..1247895) /gene="yceP" /locus_tag="STM1161" /note="similar to E. coli orf, hypothetical protein (AAC74144.1); Blastp hit to AAC74144.1 (84 aa), 94% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460132.3" /db_xref="GeneID:1252679" /translation="MEKNNEVIQTHPLVGWDISTVDSYDALMLRLHYQTPNRPEPEGT EVGQTLWLTTDVARQFISILEAGIAKIESGDYQENEYRRH" misc_feature complement(1247644..1247895) /gene="yceP" /locus_tag="STM1161" /note="biofilm formation regulator BssS; Region: bssS; PRK12301" /db_xref="CDD:183419" regulatory complement(1247902..1247907) /regulatory_class="ribosome_binding_site" /gene="yceP" /locus_tag="STM1161" /note="putative RBS for yceP; RegulonDB:STMS1H001428" gene complement(1248185..1248442) /gene="dinI" /locus_tag="STM1162" /db_xref="GeneID:1252680" CDS complement(1248185..1248430) /gene="dinI" /locus_tag="STM1162" /note="inhibits UmuD processing; similar to E. coli damage-inducible protein I (AAC74145.1); Blastp hit to AAC74145.1 (81 aa), 85% identity in aa 1 - 81" /codon_start=1 /transl_table=11 /product="DNA damage-inducible protein I" /protein_id="NP_460133.1" /db_xref="GeneID:1252680" /translation="MRIEVTIAKTSPLPAGAIDALAGELSRRISHHFPENLGNVTVRY ATANNLSVIGASKEDKERISEILQETWESADDWFINE" misc_feature complement(1248188..1248430) /gene="dinI" /locus_tag="STM1162" /note="DNA damage-inducible protein I; Provisional; Region: PRK10597" /db_xref="CDD:182578" regulatory complement(1248437..1248442) /regulatory_class="ribosome_binding_site" /gene="dinI" /locus_tag="STM1162" /note="putative RBS for dinI; RegulonDB:STMS1H001429" gene complement(1248504..1249628) /gene="pyrC" /locus_tag="STM1163" /db_xref="GeneID:1252681" CDS complement(1248504..1249550) /gene="pyrC" /locus_tag="STM1163" /EC_number="3.5.2.3" /note="dihydroorotase. (SW:PYRC_SALTY)" /codon_start=1 /transl_table=11 /product="dihydro-orotase" /protein_id="NP_460134.1" /db_xref="GeneID:1252681" /translation="MTAPSQVLKIRRPDDWHVHLRDGDMLKTVVPYTSEIYGRAIVMP NLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAA KLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHADVDIFDREARFIDT VMEPLRQRLTALKVVFEHITTKDAAQYVRDGNDYLAATITPQHLMFNRNDMLVGGIRP HLYCLPILKRNIHQQALRELVASGFTRAFLGTDSAPHSRHRKETSCGCAGCFNAPSAL GSYAAVFEEMNALAHFEAFCSLNGPQFYGLPMNTGWVELVRDEQQIPGNIALADDSLV PFLAGETVRWSVKK" misc_feature complement(1248510..1249535) /gene="pyrC" /locus_tag="STM1163" /note="Dihydroorotase [Nucleotide transport and metabolism]; Region: PyrC; COG0418" /db_xref="CDD:440187" regulatory complement(1249558..1249563) /regulatory_class="ribosome_binding_site" /gene="pyrC" /locus_tag="STM1163" /note="putative RBS for pyrC; RegulonDB:STMS1H001430" regulatory complement(1249600..1249608) /regulatory_class="minus_10_signal" /gene="pyrC" /locus_tag="STM1163" /note="putative -10_signal for pyrC; RegulonDB:STMLTH004476" protein_bind complement(1249603..1249619) /gene="pyrC" /locus_tag="STM1163" /note="putative binding site for PurR, RegulonDB: STMS1H000357" /bound_moiety="PurR" regulatory complement(1249620..1249628) /regulatory_class="minus_35_signal" /gene="pyrC" /locus_tag="STM1163" /note="putative -35_signal for pyrC; RegulonDB:STMLTH004476" gene complement(1249655..1250225) /gene="yceB" /locus_tag="STM1164" /db_xref="GeneID:1252682" CDS complement(1249655..1250215) /gene="yceB" /locus_tag="STM1164" /note="hypothetical protein in pyrC 3'region. (SW:YCEB_SALTY)" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460135.1" /db_xref="GeneID:1252682" /translation="MKKFFFAAALVVSGLLVGCNQLTQYTISEQEINQALEKRNNFSK DIGLPGIADAHIVLTNLVSQIGREEPNKVTLTGDARLDMNSLFGSQKATMKLKLKALP VFDKEKGAIYLQEMEVVDATVTPEKMQSVLQTLLPYLNQSLRSYFNQRPAYVLREDSS KGEALAKKLAKGIEVKPGEIVIPFTN" misc_feature complement(1249658..1250215) /gene="yceB" /locus_tag="STM1164" /note="lipoprotein; Provisional; Region: PRK10598" /db_xref="CDD:182579" regulatory complement(1250220..1250225) /regulatory_class="ribosome_binding_site" /gene="yceB" /locus_tag="STM1164" /note="putative RBS for yceB; RegulonDB:STMS1H001431" gene complement(1250340..1250997) /gene="grxB" /locus_tag="STM1165" /db_xref="GeneID:1252683" CDS complement(1250340..1250987) /gene="grxB" /locus_tag="STM1165" /note="similar to E. coli glutaredoxin 2 (AAC74148.1); Blastp hit to AAC74148.1 (215 aa), 85% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="glutaredoxin 2" /protein_id="NP_460136.1" /db_xref="GeneID:1252683" /translation="MKLYIYDHCPFCVKARMIFGLKNIPVELNVLQNDDEATPTRMIG QKMVPILQKDDSRYLPESMDIVHYVDNLDGKPLLTGKRNPAIEEWLRKVNGYVNQLLL PRFAKSAFDEFSTPAARQYFIRKKEASSGSFDNHLAHSAGLIKKIGDDLRLLDKLIVQ PNAVNGELSEDDIHLFPLLRNLTLVAGIHWPTKVADYRDNMAKQTQINLLSSMAI" misc_feature complement(1250358..1250987) /gene="grxB" /locus_tag="STM1165" /note="glutaredoxin 2; Provisional; Region: PRK10387" /db_xref="CDD:236679" regulatory complement(1250992..1250997) /regulatory_class="ribosome_binding_site" /gene="grxB" /locus_tag="STM1165" /note="putative RBS for grxB; RegulonDB:STMS1H001432" gene complement(1251051..1252267) /gene="yceL" /locus_tag="STM1166" /db_xref="GeneID:1252684" CDS complement(1251051..1252259) /gene="yceL" /locus_tag="STM1166" /note="similar to E. coli orf, hypothetical protein (AAC74149.1); Blastp hit to AAC74149.1 (412 aa), 92% identity in aa 11 - 412" /codon_start=1 /transl_table=11 /product="putative MFS superfamily transport protein" /protein_id="NP_460137.1" /db_xref="GeneID:1252684" /translation="MSRVSQARNLGKYFLLIDNMLVVLGFFVVFPLISIRFVDQMGWA AVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMGIAHEPWLL WFSCFLSGLGGTLFDPPRSALVVKLIRPEQRDRFFSLLMMQDSAGAVIGALLGSWLLQ YDFRLVCATGAILFILCALFNAWLLPAWKLSTVRTPVREGMRRVMSDKRFVTYVLTLA GYYMLAVQVMLMLPIMVNDIAGSPAAVKWMYAIEACLSLTLLYPIARWSEKRFRLEHR LMAGLLVMSLSMLPIGMVGNLQQLFTLICAFYIGSVIAEPARETLSASLADARARGSY MGFSRLGLAIGGAIGYIGGGWLFDMGKALAQPELPWMMLGIIGFITFLALGWQFSHKR TPRRMLEPGA" misc_feature complement(1251060..1252259) /gene="yceL" /locus_tag="STM1166" /note="multidrug efflux MFS transporter MdtH; Region: PRK11646" /db_xref="CDD:183255" regulatory complement(1252262..1252267) /regulatory_class="ribosome_binding_site" /gene="yceL" /locus_tag="STM1166" /note="putative RBS for yceL; RegulonDB:STMS1H001433" gene 1252476..1253080 /gene="rimJ" /locus_tag="STM1167" /db_xref="GeneID:1252685" regulatory 1252476..1252481 /regulatory_class="ribosome_binding_site" /gene="rimJ" /locus_tag="STM1167" /note="putative RBS for rimJ; RegulonDB:STMS1H001434" CDS 1252496..1253080 /gene="rimJ" /locus_tag="STM1167" /EC_number="2.3.1.267" /note="similar to E. coli acetylation of N-terminal alanine of 30S ribosomal subunit protein S5 (AAC74150.1); Blastp hit to AAC74150.1 (194 aa), 95% identity in aa 1 - 194" /codon_start=1 /transl_table=11 /product="acetylation of N-terminal alanine of 30S ribosomal subunit protein S5" /protein_id="NP_460138.1" /db_xref="GeneID:1252685" /translation="MFGYRSNVPKVRLTTDRLVVRLVHERDAWRLADYYAENRHFLKP WEPVRDESHCYPSGWQARLGMIGEFHKQGSAFYFALLDPEEKEIIGVANFSNVVRGSF HACYLGYSIAQKWQGQGLMFEALTAAIRYMQRTQHIHRIMANYMPHNKRSGALLARLG FEKEGYAKDYLLIDGQWRDHVLTALTTPLWTPGR" misc_feature 1252496..1253077 /gene="rimJ" /locus_tag="STM1167" /note="30S ribosomal protein S5 alanine N-acetyltransferase; Region: PRK10809" /db_xref="CDD:182749" gene 1253097..1253763 /gene="yceH" /locus_tag="STM1168" /db_xref="GeneID:1252686" regulatory 1253097..1253102 /regulatory_class="ribosome_binding_site" /gene="yceH" /locus_tag="STM1168" /note="putative RBS for yceH; RegulonDB:STMS1H001435" CDS 1253116..1253763 /gene="yceH" /locus_tag="STM1168" /note="similar to E. coli orf, hypothetical protein (AAC74151.1); Blastp hit to AAC74151.1 (215 aa), 86% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460139.1" /db_xref="GeneID:1252686" /translation="MKYELTATEARVIGCLLEKQVTTPEQYPLSVNGVVTACNQKTNR EPVMNLTEQEVQEQLDNLVKRHFLRTVSGFGNRVTKYEQRFCNSEFGDLKLSAAEVAL VTTLLLRGAQTPGELRSRASRMHEFSDMAEVESTLERLASREDGPYVVRLAREPGKRE SRYMHLFCGDVDELSLQTSAPESASGDLQSRVEALESEVAELKQRLDSLLAHLGE" misc_feature 1253116..1253760 /gene="yceH" /locus_tag="STM1168" /note="hypothetical protein; Provisional; Region: PRK11239" /db_xref="CDD:183048" gene 1253752..1254688 /gene="mviM" /locus_tag="STM1169" /db_xref="GeneID:1252687" regulatory 1253752..1253757 /regulatory_class="ribosome_binding_site" /gene="yceH" /locus_tag="STM1168" /note="putative RBS for mviM; RegulonDB:STMS1H001436" CDS 1253765..1254688 /gene="mviM" /locus_tag="STM1169" /note="virulence factor MVIM. (SW:MVIM_SALTY)" /codon_start=1 /transl_table=11 /product="putative virulence factor" /protein_id="NP_460140.1" /db_xref="GeneID:1252687" /translation="MRTLRIGIVGLGGIAQKAWLPVLTNTAGWTLQGAWSPSRDKALR ICESWRIPYVDSLANLASSCDAVFVHSSTASHYAVVSELLNAGVHVCVDKPLAENLRD AERLVALAAQKKLTLMVGFNRRFAPLYRELKTRLGTAASLRMDKHRTDSVGPHDLRFT LLDDYLHVVDTALWLAGGEARLASGTLLTSESGEMCYAEHHFSADKLQITTSMHRRAG SQRESVQAVTDGGLYDVTDMREWREERGQGILIKPIPSWQTTLEQRGFVGCARHFIDC VQNQTVPETAGEQAILAQRVVEALWRDAISE" misc_feature 1253765..1254676 /gene="mviM" /locus_tag="STM1169" /note="Predicted dehydrogenase [General function prediction only]; Region: MviM; COG0673" /db_xref="CDD:440437" gene 1254942..1256527 /gene="mviN" /locus_tag="STM1170" /db_xref="GeneID:1252688" regulatory 1254942..1254947 /regulatory_class="ribosome_binding_site" /gene="mviN" /locus_tag="STM1170" /note="putative RBS for mviN; RegulonDB:STMS1H001437" CDS 1254953..1256527 /gene="mviN" /locus_tag="STM1170" /note="virulence factor MVIM. (SW:MVIN_SALTY)" /codon_start=1 /transl_table=11 /product="putative virulence factor" /protein_id="NP_460141.1" /db_xref="GeneID:1252688" /translation="MQEFYARVWNTKEMNLLKSLAAVSSMTMFSRVLGFARDAIVARI FGAGMATDAFFVAFKLPNLLRRIFAEGAFSQAFVPILAEYKSKQGEEATRIFVAYVSG LLTLALAVVTVAGMLAAPWVIMVTAPGFADTADKFALTTQLLRITFPYILLISLASLV GAILNTWNRFSIPAFAPTFLNISMIGFALFAAPYFNPPVLALAWAVTVGGVLQLVYQL PYLKKIGMLVLPRINFRDTGAMRVVKQMGPAILGVSVSQISLIINTIFASFLASGSVS WMYYADRLMEFPSGVLGVALGTILLPSLSKSFASGNHDEYCRLMDWGLRLCFLLALPS AVALGILAKPLTVSLFQYGKFTAFDAAMTQRALIAYSVGLIGLIVVKVLAPGFYSRQD IKTPVKIAIVTLIMTQLMNLAFIGPLKHAGLSLSIGLAACLNASLLYWQLRKQNIFTP QPGWMWFLMRLIISVLVMAAVLFGVLHIMPEWSQGSMLWRLLRLMAVVIAGIAAYFAA LAVLGFKVKEFVRRTA" misc_feature 1255001..1256515 /gene="mviN" /locus_tag="STM1170" /note="Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis) [Cell wall/membrane/envelope biogenesis]; Region: MurJ; COG0728" /db_xref="CDD:440492" gene complement(1256609..1257031) /gene="flgN" /locus_tag="STM1171" /db_xref="GeneID:1252689" CDS complement(1256609..1257031) /gene="flgN" /locus_tag="STM1171" /note="belived to be export chaperone for FlgK and FlgL; flagella synthesis protein FLGN. (SW:FLGN_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460142.1" /db_xref="GeneID:1252689" /translation="MTRLSEILDQMTTVLNDLKTVMDAEQQQLSVGQINGSQLQRITE EKSSLLATLDYLEQQRRLEQNAQRSANDDIAERWQAITEKTQHLRDLNQHNGWLLEGQ IERNQQALEVLKPHQEPTLYGADGQTSVSHRGGKKISI" misc_feature complement(1256612..1257031) /gene="flgN" /locus_tag="STM1171" /note="flagella biosynthesis chaperone FlgN; Region: PRK15459" /db_xref="CDD:185356" gene complement(1257036..1257341) /gene="flgM" /locus_tag="STM1172" /db_xref="GeneID:1252690" CDS complement(1257036..1257329) /gene="flgM" /locus_tag="STM1172" /note="anti-sigma; negative regulator of flagellin synthesis (anti-sigma-28 factor). (SW:FLGM_SALTY); anti-FliA factor" /codon_start=1 /transl_table=11 /product="RflB protein" /protein_id="NP_460143.1" /db_xref="GeneID:1252690" /translation="MSIDRTSPLKPVSTVQTRETSDTPVQKTRQEKTSAATSASVTLS DAQAKLMQPGVSDINMERVEALKTAIRNGELKMDTGKIADSLIREAQSYLQSK" misc_feature complement(1257039..1257329) /gene="flgM" /locus_tag="STM1172" /note="anti-sigma-28 factor FlgM; Region: PRK10810" /db_xref="CDD:236765" regulatory complement(1257336..1257341) /regulatory_class="ribosome_binding_site" /gene="flgM" /locus_tag="STM1172" /note="putative RBS for flgM; RegulonDB:STMS1H001438" gene complement(1257421..1258094) /gene="flgA" /locus_tag="STM1173" /db_xref="GeneID:1252691" CDS complement(1257421..1258080) /gene="flgA" /locus_tag="STM1173" /note="assembly of basal-body periplasmic P ring; flagella basal body P-ring formation protein FLGA precursor. (SW:FLGA_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460144.1" /db_xref="GeneID:1252691" /translation="MQTLKRGFAVAALLFSPLTMAQDINAQLTTWFSQRLAGFSDEVV VTLRSSPNLLPSCEQPAFSMTGSAKLWGNVNVVARCANEKRYLQVNVQATGNYVAVAA PIARGGKLTPANVTLKRGRLDQLPPRTVLDIRQIQDAVSLRDLAPGQPVQLTMIRQAW RVKAGQRVQVIANGEGFSVNAEGQAMNNAAVAQNARVRMTSGQIVSGTVDSDGNILIN L" misc_feature complement(1257424..1258080) /gene="flgA" /locus_tag="STM1173" /note="flagellar basal body P-ring formation protein FlgA; Region: flgA; PRK07018" /db_xref="CDD:180794" regulatory complement(1258089..1258094) /regulatory_class="ribosome_binding_site" /gene="flgA" /locus_tag="STM1173" /note="putative RBS for flgA; RegulonDB:STMS1H001439" gene 1258229..1258653 /gene="flgB" /locus_tag="STM1174" /db_xref="GeneID:1252692" regulatory 1258229..1258234 /regulatory_class="ribosome_binding_site" /gene="flgB" /locus_tag="STM1174" /note="putative RBS for flgB; RegulonDB:STMS1H001440" CDS 1258237..1258653 /gene="flgB" /locus_tag="STM1174" /note="cell-proximal portion of basal-body rod; flagellar basal-body rod protein FLGB (putative proximal rod protein). (SW:FLGB_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460145.1" /db_xref="GeneID:1252692" /translation="MLDRLDAALRFQQEALNLRAQRQEILAANIANADTPGYQARDID FASELKKVMVRGREETGGVALTLTSSHHIPAQAVSSPAVDLLYRVPDQPSLDGNTVDM DRERTQFADNSLKYQMGLTVLGSQLKGMMNVLQGGN" misc_feature 1258237..1258650 /gene="flgB" /locus_tag="STM1174" /note="Flagellar basal body rod protein FlgB [Cell motility]; Region: FlgB; COG1815" /db_xref="CDD:441420" gene 1258643..1259061 /gene="flgC" /locus_tag="STM1175" /db_xref="GeneID:1252693" regulatory 1258643..1258648 /regulatory_class="ribosome_binding_site" /gene="flgC" /locus_tag="STM1175" /note="putative RBS for flgC; RegulonDB:STMS1H001441" CDS 1258657..1259061 /gene="flgC" /locus_tag="STM1175" /note="cell-proximal portion of basal-body rod; flagellar basal-body rod protein FLGC (putative proximal rod protein). (SW:FLGC_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460146.1" /db_xref="GeneID:1252693" /translation="MALLNIFDIAGSALAAQSKRLNVAASNLANADSVTGPDGQPYRA KQVVFQVDAAPGQATGGVKVASVIESQAPEKLVYEPGNPLADANGYVKMPNVDVVGEM VNTMSASRSYQANIEVLNTVKSMMLKTLTLGQ" misc_feature 1258657..1259058 /gene="flgC" /locus_tag="STM1175" /note="flagellar basal body rod protein FlgC; Reviewed; Region: flgC; PRK05681" /db_xref="CDD:235556" gene 1259061..1259771 /gene="flgD" /locus_tag="STM1176" /db_xref="GeneID:1252694" regulatory 1259061..1259066 /regulatory_class="ribosome_binding_site" /gene="flgD" /locus_tag="STM1176" /note="putative RBS for flgD; RegulonDB:STMS1H001442" CDS 1259073..1259771 /gene="flgD" /locus_tag="STM1176" /note="initiation of hook assembly; basal-body rod modification protein FLGD. (SW:FLGD_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460147.1" /db_xref="GeneID:1252694" /translation="MSIAVNMNDPTNTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQL KNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGAISGQIDNSQSLQATTLIGHGVM VPGTTILAGKGAEEGAVTSTTPFGVELQQPADKVTATITDKDGRVVRTLEIGELRAGV HTFTWDGKQTDGTTVPNGSYNIAITASNGGTQLVAQPLQFALVQGVTKGSNGNLLDLG TYGTTTLDEVRQII" misc_feature 1259073..1259768 /gene="flgD" /locus_tag="STM1176" /note="flagellar hook assembly protein FlgD; Region: flgD; PRK06655" /db_xref="CDD:235847" gene 1259786..1261009 /gene="flgE" /locus_tag="STM1177" /db_xref="GeneID:1252695" regulatory 1259786..1259791 /regulatory_class="ribosome_binding_site" /gene="flgE" /locus_tag="STM1177" /note="putative RBS for flgE; RegulonDB:STMS1H001443" CDS 1259798..1261009 /gene="flgE" /locus_tag="STM1177" /note="flagellar biosynthesis; flagellar hook protein flge. (SW:FLGE_SALTY)" /codon_start=1 /transl_table=11 /product="hook protein" /protein_id="NP_460148.1" /db_xref="GeneID:1252695" /translation="MSFSQAVSGLNAAATNLDVIGNNIANSATYGFKSGTASFADMFA GSKVGLGVKVAGITQDFTDGTTTNTGRGLDVAISQNGFFRLVDSNGSVFYSRNGQFKL DENRNLVNMQGMQLTGYPATGTPPTIQQGANPAPITIPNTLMAAKSTTTASMQINLNS TDPVPSKTPFSVSDADSYNKKGTVTVYDSQGNAHDMNVYFVKTKDNEWAVYTHDSSDP AATAPTTASTTLKFNENGILESGGTVNITTGTINGATAATFSLSFLNSMQQNTGANNI VATNQNGYKPGDLVSYQINNDGTVVGNYSNEQEQVLGQIVLANFANNEGLASQGDNVW AATQASGVALLGTAGSGNFGKLTNGALEASNVDLSKELVNMIVAQRNYQSNAQTIKTQ DQILNTLVNLR" misc_feature 1259798..1261006 /gene="flgE" /locus_tag="STM1177" /note="Flagellar hook protein FlgE [Cell motility]; Region: FlgE; COG1749" /db_xref="CDD:441355" gene 1261017..1261785 /gene="flgF" /locus_tag="STM1178" /db_xref="GeneID:1252696" regulatory 1261017..1261022 /regulatory_class="ribosome_binding_site" /gene="flgF" /locus_tag="STM1178" /note="putative RBS for flgF; RegulonDB:STMS1H001444" CDS 1261030..1261785 /gene="flgF" /locus_tag="STM1178" /note="cell-proximal portion of basal-body rod; flagellar basal-body rod protein flgf (putative proximal rod protein). (SW:FLGF_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460149.1" /db_xref="GeneID:1252696" /translation="MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAV PVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRN GNIQVGPTGQLTIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVGR LKLVKAEGNEVQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMT DMIANARRFEMQMKVITSVDENEGRANQLLSMS" misc_feature 1261030..1261782 /gene="flgF" /locus_tag="STM1178" /note="flagellar basal body rod protein FlgF; Reviewed; Region: flgF; PRK12640" /db_xref="CDD:183642" gene 1261788..1262581 /gene="flgG" /locus_tag="STM1179" /db_xref="GeneID:1252697" regulatory 1261788..1261793 /regulatory_class="ribosome_binding_site" /gene="flgG" /locus_tag="STM1179" /note="putative RBS for flgG; RegulonDB:STMS1H001445" CDS 1261799..1262581 /gene="flgG" /locus_tag="STM1179" /note="cell-distal portion of basal-body rod; flagellar basal-body rod protein flgg (distal rod protein). (SW:FLGG_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460150.1" /db_xref="GeneID:1252697" /translation="MISSLWIAKTGLDAQQTNMDVIANNLANVSTNGFKRQRAVFEDL LYQTIRQPGAQSSEQTTLPSGLQIGTGVRPVATERLHSQGNLSQTNNSKDVAIKGQGF FQVMLPDGTSAYTRDGSFQVDQNGQLVTAGGFQVQPAITIPANALSITIGRDGVVSVT QQGQAAPVQVGQLNLTTFMNDTGLESIGENLYIETQSSGAPNESTPGLNGAGLLYQGY VETSNVNVAEELVNMIQVQRAYEINSKAVSTTDQMLQKLTQL" misc_feature 1261799..1262578 /gene="flgG" /locus_tag="STM1179" /note="flagellar basal body rod protein FlgG; Provisional; Region: flgG; PRK12693" /db_xref="CDD:183687" gene 1262630..1263334 /gene="flgH" /locus_tag="STM1180" /db_xref="GeneID:1252698" regulatory 1262630..1262635 /regulatory_class="ribosome_binding_site" /gene="flgH" /locus_tag="STM1180" /note="putative RBS for flgH; RegulonDB:STMS1H001446" CDS 1262636..1263334 /gene="flgH" /locus_tag="STM1180" /note="basal-body outer-membrane L (lipopolysaccharide layer) ring protein; flagellar l-ring protein precursor (basal body l-ring protein). (SW:FLGH_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460151.1" /db_xref="GeneID:1252698" /translation="MQKYALHAYPVMALMVATLTGCAWIPAKPLVQGATTAQPIPGPV PVANGSIFQSAQPINYGYQPLFEDRRPRNIGDTLTIVLQENVSASKSSSANASRDGKT SFGFDTVPRYLQGLFGNSRADMEASGGNSFNGKGGANASNTFSGTLTVTVDQVLANGN LHVVGEKQIAINQGTEFIRFSGVVNPRTISGSNSVPSTQVADARIEYVGNGYINEAQN MGWLQRFFLNLSPM" misc_feature 1262672..1263331 /gene="flgH" /locus_tag="STM1180" /note="flagellar basal body L-ring protein FlgH; Region: flgH; PRK00249" /db_xref="CDD:234700" gene 1263337..1264443 /gene="flgI" /locus_tag="STM1181" /db_xref="GeneID:1252699" regulatory 1263337..1263342 /regulatory_class="ribosome_binding_site" /gene="flgI" /locus_tag="STM1181" /note="putative RBS for flgI; RegulonDB:STMS1H001447" CDS 1263346..1264443 /gene="flgI" /locus_tag="STM1181" /note="flagellar p-ring protein precursor. (SW:FLGI_SALTY)" /codon_start=1 /transl_table=11 /product="putative flagella basal body protein" /protein_id="NP_460152.1" /db_xref="GeneID:1252699" /translation="MFKALAGIVLALVATLAHAERIRDLTSVQGVRENSLIGYGLVVG LDGTGDQTTQTPFTTQTLNNMLSQLGITVPTGTNMQLKNVAAVMVTASYPPFARQGQT IDVVVSSMGNAKSLRGGTLLMTPLKGVDSQVYALAQGNILVGGAGASAGGSSVQVNQL NGGRITNGAIIERELPTQFGAGNTINLQLNDEDFTMAQQITDAINRARGYGSATALDA RTVQVRVPSGNSSQVRFLADIQNMEVNVTPQDAKVVINSRTGSVVMNREVTLDSCAVA QGNLSVTVNRQLNVNQPNTPFGGGQTVVTPQTQIDLRQSGGSLQSVRSSANLNSVVRA LNALGATPMDLMSILQSMQSAGCLRAKLEII" misc_feature 1263346..1264440 /gene="flgI" /locus_tag="STM1181" /note="flagellar basal body P-ring protein FlgI; Region: flgI; PRK05303" /db_xref="CDD:235399" gene 1264429..1265393 /gene="flgJ" /locus_tag="STM1182" /db_xref="GeneID:1252700" regulatory 1264429..1264434 /regulatory_class="ribosome_binding_site" /gene="flgJ" /locus_tag="STM1182" /note="putative RBS for flgJ; RegulonDB:STMS1H001448" CDS 1264443..1265393 /gene="flgJ" /locus_tag="STM1182" /note="flagellar protein flgj. (SW:FLGJ_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460153.1" /db_xref="GeneID:1252700" /translation="MIGDGKLLASAAWDAQSLNELKAKAGQDPAANIRPVARQVEGMF VQMMLKSMREALPKDGLFSSDQTRLYTSMYDQQIAQQMTAGKGLGLADMMVKQMTSGQ TMPADDAPQVPLKFSLETVNSYQNQALTQLVRKAIPKTPDSSDAPLSGDSKDFLARLS LPARLASEQSGVPHHLILAQAALESGWGQRQILRENGEPSYNVFGVKATASWKGPVTE ITTTEYENGEAKKVKAKFRVYSSYLEALSDYVALLTRNPRYAAVTTAATAEQGAVALQ NAGYATDPNYARKLTSMIQQLKAMSEKVSKTYSANLDNLF" misc_feature 1264446..1265378 /gene="flgJ" /locus_tag="STM1182" /note="flagellar assembly peptidoglycan hydrolase FlgJ; Region: flgJ; PRK05684" /db_xref="CDD:235559" gene 1265447..1267119 /gene="flgK" /locus_tag="STM1183" /db_xref="GeneID:1252701" regulatory 1265447..1265452 /regulatory_class="ribosome_binding_site" /gene="flgK" /locus_tag="STM1183" /note="putative RBS for flgK; RegulonDB:STMS1H001449" CDS 1265458..1267119 /gene="flgK" /locus_tag="STM1183" /note="flagellar biosynthesis protein; flagellar hook-associated protein 1 (HAP1). (SW:FLGK_SALTY)" /codon_start=1 /transl_table=11 /product="hook-filament junction protein 1" /protein_id="NP_460154.1" /db_xref="GeneID:1252701" /translation="MSSLINHAMSGLNAAQAALNTVSNNINNYNVAGYTRQTTILAQA NSTLGAGGWIGNGVYVSGVQREYDAFITNQLRGAQNQSSGLTTRYEQMSKIDNLLADK SSSLSGSLQSFFTSLQTLVSNAEDPAARQALIGKAEGLVNQFKTTDQYLRDQDKQVNI AIGSSVAQINNYAKQIANLNDQISRMTGVGAGASPNDLLDQRDQLVSELNKIVGVEVS VQDGGTYNLTMANGYTLVQGSTARQLAAVPSSADPTRTTVAYVDEAAGNIEIPEKLLN TGSLGGLLTFRSQDLDQTRNTLGQLALAFADAFNAQHTKGYDADGNKGKDFFSIGSPV VYSNSNNADKTVSLTAKVVDSTKVQATDYKIVFDGTDWQVTRTADNTTFTATKDADGK LEIDGLKVTVGTGAQKNDSFLLKPVSNAIVDMNVKVTNEAEIAMASESKLDPDVDTGD SDNRNGQALLDLQNSNVVGGNKTFNDAYATLVSDVGNKTSTLKTSSTTQANVVKQLYK QQQSVSGVNLDEEYGNLQRYQQYYLANAQVLQTANALFDALLNIR" misc_feature 1265458..1267116 /gene="flgK" /locus_tag="STM1183" /note="flagellar hook-associated protein FlgK; Validated; Region: flgK; PRK08147" /db_xref="CDD:236165" gene 1267119..1268087 /gene="flgL" /locus_tag="STM1184" /db_xref="GeneID:1252702" regulatory 1267119..1267124 /regulatory_class="ribosome_binding_site" /gene="flgL" /locus_tag="STM1184" /note="putative RBS for flgL; RegulonDB:STMS1H001450" CDS 1267134..1268087 /gene="flgL" /locus_tag="STM1184" /note="flagellar biosynthesis protein; flagellar hook-associated protein 3 (HAP3) (hook-filament junctionprotein). (SW:FLGL_SALTY)" /codon_start=1 /transl_table=11 /product="hook-filament junction protein" /protein_id="NP_460155.1" /db_xref="GeneID:1252702" /translation="MRISTQMMYEQNMSGITNSQAEWMKLGEQMSTGKRVTNPSDDPI AASQAVVLSQAQAQNSQYALARTFATQKVSLEESVLSQVTTAIQTAQEKIVYAGNGTL SDDDRASLATDLQGIRDQLMNLANSTDGNGRYIFAGYKTEAAPFDQATGGYHGGEKSV TQQVDSARTMVIGHTGAQIFNSITSNAVPEPDGSDSEKNLFVMLDTAIAALKTPVEGN NVEKEKAAAAIDKTNRGLKNSLNNVLTVRAELGTQLSELSTLDSLGSDRALGQKLQMS NLVDVDWNSVISSYVMQQAALQASYKTFTDMQGMSLFQLNR" misc_feature 1267134..1268084 /gene="flgL" /locus_tag="STM1184" /note="flagellar hook-filament junction protein FlgL; Region: flgL; PRK08027" /db_xref="CDD:181202" gene complement(1268344..1271547) /gene="rne" /locus_tag="STM1185" /db_xref="GeneID:1252703" CDS complement(1268344..1271547) /gene="rne" /locus_tag="STM1185" /EC_number="3.1.4.-" /note="similar to E. coli RNase E, membrane attachment, mRNA turnover, maturation 5S RNA (AAC74168.1); Blastp hit to AAC74168.1 (1061 aa), 82% identity in aa 1 - 1061" /codon_start=1 /transl_table=11 /product="RNase E" /protein_id="NP_460156.1" /db_xref="GeneID:1252703" /translation="MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKG KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIV QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEL PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAF RDYLRQDIGEILIDNPKVMEMARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIE SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL SPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASY LLNEKRTAVNAIETRQDGVRCVIVPNDQMETPHYSVLRVRKGEETPTLSYMLPKLHEE AMALPSEEEYAERKRPEQPALATFAMPDVPPAPTPVEPAVSVATAKKDNVAAAQPAQP GLFSRFLNALKQLFSGEETKTVETAAPKAEEKAERQQDRRKPRQNNRRDRNERRDTRD NRAGRDGGESRDDNRRNRRQTQQQNAEARDTRQQETAEKVKTGDEQQQTPRRERSRRR NDDKRQAQQEVKALNREEQPVQETEQEERVQQVQPRRKQRQLNQKVRFTNSAVVETVD TPVVVDEPRPVENVEQPVPAPRTELAKVDLPVVADIAPEQDDSVEPRDNTGMPRRSRR SPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEMASGKVWIRYPIVRPQETQVVD EQREADLALPQPVVAEQQVIAATAALEPQASVQAVENVAVEPQTVAEPQAPEVVEVET THPEVIAAPVDEQPQLIAESDTPVAQEVIADAEPVAETADASITVAENVADVVVVEPE EETKAEAAVVEHTAEETVIAPAQVVEKSQDVVCVDDHNHASAPMTRAPAPEYVPETPH HSDWQRPSFHFEGKGAAGGHSATRHASAPATRPQPVE" misc_feature complement(1268356..1271547) /gene="rne" /locus_tag="STM1185" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:236766" gene 1271638..1272012 /locus_tag="STM1186" /note="pseudogene; in-frame stop following codon 97; no start near coli start" /pseudo /db_xref="GeneID:1252704" gene 1272121..1273080 /gene="rluC" /locus_tag="STM1187" /db_xref="GeneID:1252705" CDS 1272121..1273080 /gene="rluC" /locus_tag="STM1187" /EC_number="4.2.1.70" /note="similar to E. coli orf, hypothetical protein (AAC74170.1); Blastp hit to AAC74170.1 (319 aa), 97% identity in aa 1 - 319" /codon_start=1 /transl_table=11 /product="23S rRNA pseudouridylate synthase" /protein_id="NP_460157.1" /db_xref="GeneID:1252705" /translation="MKTETPSVKIVAIAADEAGQRIDNFLRTQLKGVPKSMIYRILRK GEVRVNKKRIKPEYKLEAGDEVRIPPVRVAEREEEAVSPHLQKVAALADVILYEDDHI LVLNKPSGTAVHGGSGLSFGVIEGLRALRPEARFLELVHRLDRDTSGVLLVAKKRSAL RSLHEQLREKGMQKDYLALVRGQWQSHVKTVQAPLLKNILQSGERIVRVSQEGKPSET RFKVEERYAFATLVRCSPVTGRTHQIRVHTQYAGHPIAFDDRYGDREFDQQLTEAGTG LKRLFLHAAALKFTHPGTGEVMRIEAPMDNALKRCLQVLRNAK" misc_feature 1272121..1273077 /gene="rluC" /locus_tag="STM1187" /note="23S rRNA pseudouridine(955/2504/2580) synthase RluC; Region: PRK11025" /db_xref="CDD:182909" gene 1273236..1273979 /locus_tag="STM1188" /db_xref="GeneID:1252706" CDS 1273236..1273979 /locus_tag="STM1188" /note="similar to E. coli orf, hypothetical protein (AAC76578.1); Blastp hit to AAC76578.1 (276 aa), 28% identity in aa 49 - 238" /codon_start=1 /transl_table=11 /product="putative inner membrane lipoprotein" /protein_id="NP_460158.1" /db_xref="GeneID:1252706" /translation="MRSFTQRWGKYVIVPLVIAMLTGCEGKGDSSRRAFVEYLNTQII TSPVVGVCELTPAQRQAFGHYADDYDVLLTAYGQIFAVVYETGQEDKITGVIQSERDN LVFLNELRVARDVNNRFILRLKNVSSENRKKYSALKLPADVKPVFDAAWNKTVTPLDE TMTRYYFLRGKRLDQLVAMGEFLQKQGNKVRFETNGKAVFADLAAKEHFQDQQFNFFI TQNDINHLTQQMVEFINSQQDAADAGGVN" misc_feature 1273269..1273958 /locus_tag="STM1188" /note="Protein of unknown function (DUF3053); Region: DUF3053; pfam11254" /db_xref="CDD:431761" gene complement(1274481..1275077) /gene="yceF" /locus_tag="STM1189" /db_xref="GeneID:1252707" CDS complement(1274481..1275065) /gene="yceF" /locus_tag="STM1189" /note="similar to E. coli orf, hypothetical protein (AAC74171.1); Blastp hit to AAC74171.1 (207 aa), 88% identity in aa 14 - 205" /codon_start=1 /transl_table=11 /product="putative inhibitor of septum formation" /protein_id="NP_460159.1" /db_xref="GeneID:1252707" /translation="MPRLILASTSPWRRALLEKLTIPFECAAPDVDETPMPGEAPRQL VLRLAQAKAQSLAARFPNHLIIGSDQICVLDGEITGKPLTEEKARQQLAKASGNIVTF YTGLALYNSASGHLQTEVEPFDVHFRHLSEAEIDDYVRKEHPLHCAGSFKSEGLGIAL FERLEGRDPNTLIGLPLIALCQMLRREGFNPLQQ" misc_feature complement(1274490..1275062) /gene="yceF" /locus_tag="STM1189" /note="7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily [Secondary metabolites biosynthesis, transport and catabolism]; Region: Maf; COG0424" /db_xref="CDD:440193" regulatory complement(1275072..1275077) /regulatory_class="ribosome_binding_site" /gene="yceF" /locus_tag="STM1189" /note="putative RBS for yceF; RegulonDB:STMS1H001451" gene 1275222..1275784 /gene="yceD" /locus_tag="STM1190" /db_xref="GeneID:1252708" regulatory 1275222..1275230 /regulatory_class="minus_35_signal" /gene="yceD" /locus_tag="STM1190" /note="putative -35_signal for yceD; RegulonDB:STMLTH004477" regulatory 1275246..1275254 /regulatory_class="minus_10_signal" /gene="yceD" /locus_tag="STM1190" /note="putative -10_signal for yceD; RegulonDB:STMLTH004477" CDS 1275263..1275784 /gene="yceD" /locus_tag="STM1190" /note="hypothetical protein in rne-rpmF intergenic region (G30K). (SW:YCED_SALTY)" /codon_start=1 /transl_table=11 /product="putative metal-binding protein" /protein_id="NP_460160.1" /db_xref="GeneID:1252708" /translation="MQKVKLPLTLDPVRTAQKRLDYQGIYTPDQVERVAESVVSVDSD VECSMSFAIDNQRLAVLTGDAVVTVSLECQRCGKPFTHQVHTTYCFSPVRSDEQAEAL PEAYEPIEVNEFGEIDLLATVEDEIILALPVVPVHDSEHCEVSEADMVFGELPDEAQK PNPFAVLASLKRK" misc_feature 1275263..1275778 /gene="yceD" /locus_tag="STM1190" /note="23S rRNA accumulation protein YceD; Region: PRK11193" /db_xref="CDD:236878" gene 1275822..1276009 /gene="rpmF" /locus_tag="STM1191" /db_xref="GeneID:1252709" regulatory 1275822..1275827 /regulatory_class="ribosome_binding_site" /gene="rpmF" /locus_tag="STM1191" /note="putative RBS for rpmF; RegulonDB:STMS1H001452" CDS 1275836..1276009 /gene="rpmF" /locus_tag="STM1191" /note="50S ribosomal protein L32. (SW:RL32_ECOLI)" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L32" /protein_id="NP_460161.1" /db_xref="GeneID:1252709" /translation="MAVQQNKPTRSKRGMRRSHDALTAVTSLSVDKTSGEKHLRHHIT ADGYYRGRKVIAK" misc_feature 1275839..1276006 /gene="rpmF" /locus_tag="STM1191" /note="Ribosomal protein L32 [Translation, ribosomal structure and biogenesis]; Region: RpmF; COG0333" /db_xref="CDD:440102" gene 1276126..1277222 /gene="plsX" /locus_tag="STM1192" /db_xref="GeneID:1252710" regulatory 1276126..1276131 /regulatory_class="ribosome_binding_site" /gene="plsX" /locus_tag="STM1192" /note="putative RBS for plsX; RegulonDB:STMS1H001453" CDS 1276143..1277222 /gene="plsX" /locus_tag="STM1192" /note="fatty acid/phospholipid synthesis protein PLSX. (SW:PLSX_SALTY)" /codon_start=1 /transl_table=11 /product="putative fatty acid/phospholipid synthesis protein" /protein_id="NP_460162.1" /db_xref="GeneID:1252710" /translation="MTRLTLALDVMGGDFGPSVTVPAALQALNANSQLTLLLVGNPDI ITPLLAKADFEQRSRLQIIPAQSVIASDARPSQAIRASRGTSMRVALELVKEGRAEAC VSAGNTGALMGLAKLLLKPLEGIERPALVTVLPHQQKGKTVVLDLGANVDCDSTMLVQ FAVMGAVLAEEVVGIKNPRVALLNIGEEETKGLDSIREASLMLKTVPTINYIGYLEAN ELLTGKTDVLVCDGFTGNVTLKTMEGVVRMFLSLLKSQGEGKKRSWWLLLLKRWLQKS LTRRFSHLNPDQYNGACLLGLRGTVIKSHGAANQRAFAVAIEQAVQAVQRQVPQRIAA RLESVYPAGFEPLDDGKGVNLRAHR" misc_feature 1276149..1277159 /gene="plsX" /locus_tag="STM1192" /note="Acyl-ACP:phosphate acyltransferase (fatty acid/phospholipid biosynthesis) [Lipid transport and metabolism]; Region: PlsX; COG0416" /db_xref="CDD:440185" gene 1277302..1278255 /gene="fabH" /locus_tag="STM1193" /db_xref="GeneID:1252711" CDS 1277302..1278255 /gene="fabH" /locus_tag="STM1193" /EC_number="2.3.1.41" /EC_number="2.3.1.38" /note="3-oxoacyl-[acyl-carrier-protein] synthase III. (SW:FABH_SALTY)" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] synthase III; acetylCoA ACP transacylase" /protein_id="NP_460163.1" /db_xref="GeneID:1252711" /translation="MYTKIIGTGSYLPEQVRTNADLEKMVETSDEWIVTRTGIRKRHI AAPNETVATMGFTAANRAIEMAGIDKDQIGLIVVATTSATHAFPSAACQIQSMLGIKG CPAFDVAAACAGFTYALSIADQYVKSGAVKHALVVGSDVLARTCDPGDRGTIIIFGDG AGAAVLSASEEPGIISTHLHADGRYGELLTLPNADRVNPDNPIYLTMAGNEVFKVAVT ELAHIVDETLAANNLDRSELDWLVPHQANLRIISATAKKLGMSMDNVVVTLDRHGNTS AASVPCALDEAVRDGRIKAGQLVLLEAFGGGFTWGSALIRF" misc_feature 1277302..1278252 /gene="fabH" /locus_tag="STM1193" /note="beta-ketoacyl-ACP synthase 3; Region: PRK09352" /db_xref="CDD:236475" gene 1278259..1279200 /gene="fabD" /locus_tag="STM1194" /db_xref="GeneID:1252712" regulatory 1278259..1278264 /regulatory_class="ribosome_binding_site" /gene="fabD" /locus_tag="STM1194" /note="putative RBS for fabD; RegulonDB:STMS1H001454" CDS 1278271..1279200 /gene="fabD" /locus_tag="STM1194" /EC_number="2.3.1.39" /note="malonyl coA-acyl carrier protein transacylase. (SW:FABD_SALTY)" /codon_start=1 /transl_table=11 /product="malonyl-CoA-[acyl-carrier-protein] transacylase" /protein_id="NP_460164.1" /db_xref="GeneID:1252712" /translation="MTQFAFVFPGQGSQSVGMLAEMAANYPIVEETFAEASAALGYDL WALTQQGPAEELNKTWQTQPALLTASVALWRVWQQQGGKMPALMAGHSLGEYSALVCA GVINFADAVRLVEMRGKFMQEAVPEGTGGMSAIIGLDDASIAKACEESAEGQVVSPVN FNSPGQVVIAGHKEAVERAGAACKAAGAKRALPLPVSVPSHCALMKPAADKLAVELAK ITFSAPTVPVVNNVDVKCETDAAAIRDALVRQLYNPVQWTKSVEFIAAQGVEHLYEVG PGKVLTGLTKRIVDTLTASALNEPAALSAALTQ" misc_feature 1278280..1279191 /gene="fabD" /locus_tag="STM1194" /note="Malonyl CoA-acyl carrier protein transacylase [Lipid transport and metabolism]; Region: FabD; COG0331" /db_xref="CDD:440100" gene 1279203..1279947 /gene="fabG" /locus_tag="STM1195" /db_xref="GeneID:1252713" regulatory 1279203..1279208 /regulatory_class="ribosome_binding_site" /gene="fabG" /locus_tag="STM1195" /note="putative RBS for fabG; RegulonDB:STMS1H001455" CDS 1279213..1279947 /gene="fabG" /locus_tag="STM1195" /EC_number="1.1.1.100" /note="3-oxoacyl-[acyl-carrier protein] reductase. (SW:FABG_SALTY)" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] reductase" /protein_id="NP_460165.1" /db_xref="GeneID:1252713" /translation="MSFEGKIALVTGASRGIGRAIAETLVARGAKVIGTATSENGAKN ISDYLGANGKGLMLNVTDPASIESVLENIRAEFGEVDILVNNAGITRDNLLMRMKDDE WNDIIETNLSSVFRLSKAVMRAMMKKRCGRIITIGSVVGTMGNAGQANYAAAKAGLIG FSKSLAREVASRGITVNVVAPGFIETDMTRALSDDQRAGILAQVPAGRLGGAQEIASA VAFLASDEASYITGETLHVNGGMYMV" misc_feature 1279213..1279944 /gene="fabG" /locus_tag="STM1195" /note="3-ketoacyl-(acyl-carrier-protein) reductase; Validated; Region: fabG; PRK05557" /db_xref="CDD:235500" gene 1280087..1280339 /gene="acpP" /locus_tag="STM1196" /db_xref="GeneID:1252714" regulatory 1280087..1280092 /regulatory_class="ribosome_binding_site" /gene="acpP" /locus_tag="STM1196" /note="putative RBS for acpP; RegulonDB:STMS1H001456" CDS 1280103..1280339 /gene="acpP" /locus_tag="STM1196" /note="similar to E. coli acyl carrier protein (AAC74178.1); Blastp hit to AAC74178.1 (78 aa), 100% identity in aa 1 - 78" /codon_start=1 /transl_table=11 /product="acyl carrier protein" /protein_id="NP_460166.1" /db_xref="GeneID:1252714" /translation="MSTIEERVKKIIGEQLGVKQEEVTNNASFVEDLGADSLDTVELV MALEEEFDTEIPDEEAEKITTVQAAIDYINGHQA" misc_feature 1280103..1280336 /gene="acpP" /locus_tag="STM1196" /note="acyl carrier protein; Provisional; Region: acpP; PRK00982" /db_xref="CDD:179197" gene 1280412..1281666 /gene="fabF" /locus_tag="STM1197" /db_xref="GeneID:1252715" regulatory 1280412..1280417 /regulatory_class="ribosome_binding_site" /gene="fabF" /locus_tag="STM1197" /note="putative RBS for fabF; RegulonDB:STMS1H001457" CDS 1280425..1281666 /gene="fabF" /locus_tag="STM1197" /EC_number="2.3.1.41" /note="similar to E. coli 3-oxoacyl-[acyl-carrier-protein] synthase II (AAC74179.1); Blastp hit to AAC74179.1 (413 aa), 94% identity in aa 1 - 413" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] synthase II" /protein_id="NP_460167.1" /db_xref="GeneID:1252715" /translation="MSKRRVVVTGLGMLSPVGNTVESTWKALLAGQSGISLIDHFDTS AYATKFAGLVKDFNCDDIISRKEQRKMDAFIQYGIVAGVQAMQDSGLEVTEENASRIG AAIGSGIGGLGLIEENHSSLVKGGPRKISPFFVPSTIVNMVAGHLTIMYGLRGPSISI ATACTSGVHNIGHAARIIAYGDADAMVAGGAEKASTPLGVGGFGAARALSTRNDNPQA ASRPWDKERDGFVLGDGAGMLVLEEYEHAKARGAKIYAEIVGFGMSSDAYHMTSPPEN GAGAALAMVNALRDAAIEPAQIGYVNAHGTSTPAGDKAETQAVKSVFGDAASRVMVSS TKSMTGHLLGAAGAVESIFSILALRDQAIPPTINLDNPDEGCDLDFVPHEARQVSDLE YALCNSFGFGGTNGSLIFKKI" misc_feature 1280431..1281663 /gene="fabF" /locus_tag="STM1197" /note="beta-ketoacyl-ACP synthase II; Region: PRK07314" /db_xref="CDD:235987" misc_feature order(1280746..1280748,1280767..1280772,1280782..1280784, 1280788..1280793,1280827..1280829,1280845..1280847, 1280857..1280859,1280869..1280871,1280887..1280889, 1280893..1280895,1280899..1280907,1280941..1280943, 1280950..1280955,1280962..1280964,1281025..1281030, 1281037..1281042,1281214..1281228,1281268..1281270, 1281628..1281630,1281634..1281636) /gene="fabF" /locus_tag="STM1197" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238430" misc_feature order(1280914..1280916,1281334..1281336,1281445..1281447) /gene="fabF" /locus_tag="STM1197" /note="active site" /db_xref="CDD:238430" gene 1281779..1282599 /gene="pabC" /locus_tag="STM1198" /db_xref="GeneID:1252716" regulatory 1281779..1281784 /regulatory_class="ribosome_binding_site" /gene="pabC" /locus_tag="STM1198" /note="putative RBS for pabC; RegulonDB:STMS1H001458" CDS 1281790..1282599 /gene="pabC" /locus_tag="STM1198" /EC_number="4.-.-.-" /note="similar to E. coli 4-amino-4-deoxychorismate lyase (AAC74180.1); Blastp hit to AAC74180.1 (269 aa), 69% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="4-amino-4-deoxychorismate lyase" /protein_id="NP_460168.1" /db_xref="GeneID:1252716" /translation="MFLINGHAQDQLAVSDRATQFGDGSFTTARIVDGNICHLEAHLQ RLQVACEKLRIAFSHWSTLRQEMTMLATGHDSGVLKVIISRGSGGRGYSAMNCQAATR ILSVSAYPAYYSQWRKQGITLTLSPIPLGRNPYLAGLKHLNRLEQVLIRSHLEQTDAD EALVLDSEGWVTECCAANLFWRTGDIVFTPRLDQAGVNGIMRQFCLRQLAQSPFQVLE VQAREEAVRQADEIIICNALMPIIPIRAYHGTSYSSRTLFQFLAPFCEHPN" misc_feature 1281790..1282593 /gene="pabC" /locus_tag="STM1198" /note="4-amino-4-deoxychorismate lyase; Reviewed; Region: PRK06092" /db_xref="CDD:235696" misc_feature order(1281922..1281924,1282207..1282209,1282306..1282308) /gene="pabC" /locus_tag="STM1198" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:238800" misc_feature 1282207..1282209 /gene="pabC" /locus_tag="STM1198" /note="catalytic residue [active]" /db_xref="CDD:238800" gene 1282602..1283624 /gene="yceG" /locus_tag="STM1199" /db_xref="GeneID:1252717" CDS 1282602..1283624 /gene="yceG" /locus_tag="STM1199" /note="similar to E. coli putative thymidylate kinase (AAC74181.1); Blastp hit to AAC74181.1 (340 aa), 85% identity in aa 1 - 340" /codon_start=1 /transl_table=11 /product="putative periplasmic solute-binding protein" /protein_id="NP_460169.1" /db_xref="GeneID:1252717" /translation="MKKLSGVFLLLLVVLGIAVGVGMWKVRHLANSTLLIKDETIFTL KAGTGRLALGDQLYDEKIINRPRVFQWLLRVEPELSHFKAGTYRFTTGMTVREMLELL ESGKEAQFPLRFVEGMRLSDYLKQLREAPYIRHTLPDDDYATVAQALKLAHPEWVEGW FWPDTWMYTANTSDVAILKRAHQKMVKAVDTVWKGRAEGLPYKDQNQLVTMASIIEKE TAVASERDQVASVFINRLRIGMRLQTDPTVIYGMGTSYNGNLSRADLEKPTAYNTYTI TGLPPGPIASPSEASLQAAAHPAKTPYLYFVADGKGGHTFNTNLASHNRSVQEYLKVL KEKNGQ" misc_feature 1282602..1283621 /gene="yceG" /locus_tag="STM1199" /note="putative aminodeoxychorismate lyase; Provisional; Region: PRK10270" /db_xref="CDD:182348" misc_feature order(1282845..1282847,1282851..1282868,1282893..1282895, 1282905..1282907,1282926..1282931,1282938..1282940, 1283328..1283330,1283334..1283336,1283385..1283387, 1283394..1283396,1283535..1283540,1283559..1283561, 1283568..1283573,1283580..1283582) /gene="yceG" /locus_tag="STM1199" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:381750" gene 1283604..1284255 /gene="tmk" /locus_tag="STM1200" /db_xref="GeneID:1252718" regulatory 1283604..1283609 /regulatory_class="ribosome_binding_site" /gene="tmk" /locus_tag="STM1200" /note="putative RBS for tmk; RegulonDB:STMS1H001459" CDS 1283614..1284255 /gene="tmk" /locus_tag="STM1200" /EC_number="2.7.4.9" /note="similar to E. coli thymidylate kinase (AAC74182.1); Blastp hit to AAC74182.1 (213 aa), 90% identity in aa 1 - 210" /codon_start=1 /transl_table=11 /product="thymidylate kinase" /protein_id="NP_460170.1" /db_xref="GeneID:1252718" /translation="MGSNYIVIEGLEGAGKTTARDVVVETLEQLGIRNMIFTREPGGT QLAEKLRSLVLDIRSVGDEVITDKAEVLMFYAARVQLVETVIKPALAQGVWVIGDRHD LSTQAYQGGGRGIDQTMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARGDLDRIE QESFDFFNRTRARYLELAAQDSRIRTIDATQPLDAVMRDIRATVTKWVQEQAA" misc_feature 1283614..1284213 /gene="tmk" /locus_tag="STM1200" /note="dTMP kinase; Region: DTMP_kinase; TIGR00041" /db_xref="CDD:161676" misc_feature order(1283662..1283664,1283833..1283835,1283845..1283847, 1283908..1283913,1283935..1283937,1284070..1284072) /gene="tmk" /locus_tag="STM1200" /note="TMP-binding site [active]" /db_xref="CDD:238835" misc_feature order(1283665..1283667,1284058..1284060,1284178..1284180) /gene="tmk" /locus_tag="STM1200" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:238835" gene 1284238..1285256 /gene="holB" /locus_tag="STM1201" /db_xref="GeneID:1252719" regulatory 1284238..1284243 /regulatory_class="ribosome_binding_site" /gene="tmk" /locus_tag="STM1200" /note="putative RBS for holB; RegulonDB:STMS1H001460" CDS 1284252..1285256 /gene="holB" /locus_tag="STM1201" /EC_number="2.7.7.7" /note="similar to E. coli DNA polymerase III, delta prime subunit (AAC74183.1); Blastp hit to AAC74183.1 (334 aa), 79% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="DNA polymerase III, delta prime subunit" /protein_id="NP_460171.1" /db_xref="GeneID:1252719" /translation="MKWYPWLRPAYEKLVESYQAGRGHHALLIQALPGMGDEALCYAL SRYLLCQQPEGHKSCGHCRGCQLMQAGTHPDYYTLTPDKGKSSLGVDAVREVSEKLYE HSRLGGAKVVWIADAALLTDAAANALLKTLEEPPEQTWFFLASPEPARLLATLRSRCR LHHLAPPSESYAMSWLSREVTASQEALLTALRLNAGSPGAALALLQSERWAQREALCQ ALMDSLHTGDWYAVLTALNHEQAPARLHWLATLLVDALKRQHGASYLTNVDADAVVAA LAGPLSPARIQAILNDVCHCRDQLLHVTGLNRELVLTDLILRIEHYLQPGTLLPVPHL " misc_feature 1284252..1285253 /gene="holB" /locus_tag="STM1201" /note="DNA polymerase III subunit delta'; Validated; Region: PRK07993" /db_xref="CDD:181190" gene 1285257..1286064 /gene="ycfH" /locus_tag="STM1202" /db_xref="GeneID:1252720" regulatory 1285257..1285262 /regulatory_class="ribosome_binding_site" /gene="ycfH" /locus_tag="STM1202" /note="putative RBS for ycfH; RegulonDB:STMS1H001462" CDS 1285267..1286064 /gene="ycfH" /locus_tag="STM1202" /note="similar to E. coli orf, hypothetical protein (AAC74184.1); Blastp hit to AAC74184.1 (265 aa), 93% identity in aa 1 - 265" /codon_start=1 /transl_table=11 /product="putative metal-dependent hydrolase" /protein_id="NP_460172.1" /db_xref="GeneID:1252720" /translation="MFLVDSHCHLDGLDYQSLHKDVDDVLAKAAARDVKFCLAVATTL PGYRHMRKLVGKRDNVVFSCGVHPLNQDEAYDVEELRLLAAEDDVVAMGETGLDYFYT PETKIRQQASFIHHIQIGRELHKPVIVHTRDARADTLAILREEKVTDCGGVLHCFTED RETAGKLLDLGFYISFSGIVTFRNAEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKE NQPAMVRDVAEYMAVLKGVAVEELAQITTDNFARLFHIDASRLSSIR" misc_feature 1285267..1286061 /gene="ycfH" /locus_tag="STM1202" /note="putative DNAse; Provisional; Region: PRK10812" /db_xref="CDD:236767" misc_feature order(1285285..1285287,1285291..1285293,1285654..1285656, 1285729..1285731,1285879..1285881) /gene="ycfH" /locus_tag="STM1202" /note="active site" /db_xref="CDD:238635" gene 1286342..1287792 /gene="ptsG" /locus_tag="STM1203" /db_xref="GeneID:1252721" regulatory 1286342..1286347 /regulatory_class="ribosome_binding_site" /gene="ptsG" /locus_tag="STM1203" /note="putative RBS for ptsG; RegulonDB:STMS1H001463" CDS 1286359..1287792 /gene="ptsG" /locus_tag="STM1203" /note="PTS system; glucose-specific IIBC component (EIIBC-GLC) (glucose-permease IIBC component) (phosphotransferase enzyme II, BC component). (SW:PTGB_SALTY)" /codon_start=1 /transl_table=11 /product="glucose-specific IIBC component of the Sugar Specific PTS family" /protein_id="NP_460173.1" /db_xref="GeneID:1252721" /translation="MFKNAFANLQKVGKSLMLPVSVLPIAGILLGVGSANFSWLPAVV SHVMAEAGGSVFANMPLIFAIGVALGFTNNDGVSALAAVVAYGIMVKTMAVVAPLVLH LPAEEIAAKHLADTGVLGGIISGAIAAYMFNRFYRIKLPEYLGFFAGKRFVPIISGLA AIFTGVVLSFVWPPIGTAIQAFSQWAAYQNPVVAFGIYGFIERCLVPFGLHHIWNVPF QMQIGEYTNAAGQVFHGDIPRYMAGDPTAGMLSGGFLFKMYGLPAAAIAIWHSAKPEN RAKVGGIMISAALTSFLTGITEPIEFSFMFVAPILYIIHAILAGLAFPICILLGMRDG TSFSHGLIDFIVLSGNSSKLWLFPIVGAGYAIVYYTVFRVLIKALDLKTPGREDTTDD AKAGATSEMAPALVAAFGGKENITNLDACITRLRVSVADVAKVDQAGLKKLGAAGVVV AGSGVQAIFGTKSDNLKTEMDEYIRNS" misc_feature 1286359..1287789 /gene="ptsG" /locus_tag="STM1203" /note="PTS system glucose-specific transporter subunits IIBC; Provisional; Region: PRK11089" /db_xref="CDD:182955" gene complement(1287877..1290063) /gene="fhuE" /locus_tag="STM1204" /db_xref="GeneID:1252722" CDS complement(1287877..1290051) /gene="fhuE" /locus_tag="STM1204" /note="Fe(III)-ferrioxamine B and Fe(III)-rhodotrulic acid uptake; similar to E. coli outer membrane receptor for ferric iron uptake (AAC74186.1); Blastp hit to AAC74186.1 (729 aa), 81% identity in aa 5 - 729" /codon_start=1 /transl_table=11 /product="outer membrane receptor for Fe(III)-coprogen" /protein_id="NP_460174.1" /db_xref="GeneID:1252722" /translation="MSFIQYRRDKHLPSTAAPSLLAMGMAMAFMPAAFAAEDTVIVEG ETTADAVNREEQDYSMKTTAAGTKMPMTQRDIPQSVSIVSQQRMEDQQLQTLGEVMTN TLGISGSQADSDRISYYSRGFEIDNYMVDGIPTYFESRWNLGDALTDTALYERVEVVR GANGLMTGTGNPSASINMIRKHATSREFKGNVSTEYGSWNKQRYVMDLQSPLTADGNV RGRIVAGYQNNDSWLDRYNSEKAFFSGIVDADLGTTTNLSAGYEYQKIDVNSPTWGGL PRWNTDGSKNSYDRARSTAPDWAYNNKEINKFFVTLKQRFAESWQATLNATHTEVKFD SKMMYIDALVDKETGTLVSPYGASYPVVGGTGWNSGKRKVDAIDLFADGAYELFGRQH NMMFGGSYSKQNNRYFSAWANVFPDDIGNFSAFNGNFPQTHWAPQNLAQDDTTHMKSL YAATRISLADPLHLILGARYTNWRVDTLTYSMEKNHTTPYAGLIYDINDNWSAYASYT SIFQPQNKRDKAGQYLAPITGNNYEAGLKSDWMNSRLTTTLSVFRIEQNNVAQATTIP IPGSNGEFAWKSTDGTVSKGVEFEVNGAITDNWQMTFGATRYVAEDNEGNAVNPNLPR TSVKLFTRYRLPAIPELTVGGGVNWQNRVYKDTTTPYGTFRAEQGSYALVDLFTRYQV TKNFSVQGNINNLFDKTYDTNIDGSIVYGAPRNVSLTANYQF" misc_feature complement(1287880..1290048) /gene="fhuE" /locus_tag="STM1204" /note="ferric-rhodotorulic acid outer membrane transporter; Provisional; Region: PRK10003" /db_xref="CDD:236640" misc_feature complement(order(1289512..1289538,1289572..1289604, 1289647..1289670,1289683..1289691,1289692..1289697, 1289731..1289760,1289788..1289817)) /gene="fhuE" /locus_tag="STM1204" /note="N-terminal plug [active]" /db_xref="CDD:238657" misc_feature complement(order(1288942..1288944,1289053..1289055)) /gene="fhuE" /locus_tag="STM1204" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:238657" regulatory complement(1290058..1290063) /regulatory_class="ribosome_binding_site" /gene="fhuE" /locus_tag="STM1204" /note="putative RBS for fhuE; RegulonDB:STMS1H001464" gene 1290381..1290752 /gene="ycfF" /locus_tag="STM1205" /db_xref="GeneID:1252723" regulatory 1290381..1290386 /regulatory_class="ribosome_binding_site" /gene="ycfF" /locus_tag="STM1205" /note="putative RBS for ycfF; RegulonDB:STMS1H001465" CDS 1290393..1290752 /gene="ycfF" /locus_tag="STM1205" /note="similar to E. coli orf, hypothetical protein (AAC74187.1); Blastp hit to AAC74187.1 (119 aa), 97% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="putative protein kinase C inhibitor" /protein_id="NP_460175.1" /db_xref="GeneID:1252723" /translation="MAEETIFSKIIRREIPSDIVYQDELVTAFRDISPQAPTHILIIP NILIPTVNDVTAEHEQALGRMITVAAKIAEQEGIAEDGYRLIMNTNRHGGQEVYHIHM HLLGGRPLGPMLAHKGL" misc_feature 1290393..1290749 /gene="ycfF" /locus_tag="STM1205" /note="purine nucleoside phosphoramidase; Provisional; Region: PRK10687" /db_xref="CDD:182648" misc_feature order(1290477..1290479,1290483..1290488,1290507..1290509, 1290513..1290515,1290654..1290656,1290675..1290677, 1290681..1290683,1290693..1290695,1290699..1290701) /gene="ycfF" /locus_tag="STM1205" /note="nucleotide binding site/active site [active]" /db_xref="CDD:238607" misc_feature order(1290687..1290689,1290693..1290695,1290699..1290707) /gene="ycfF" /locus_tag="STM1205" /note="HIT family signature motif [active]" /db_xref="CDD:238607" misc_feature 1290693..1290695 /gene="ycfF" /locus_tag="STM1205" /note="catalytic residue [active]" /db_xref="CDD:238607" gene 1290742..1291129 /gene="ycfL" /locus_tag="STM1206" /db_xref="GeneID:1252724" regulatory 1290742..1290747 /regulatory_class="ribosome_binding_site" /gene="ycfF" /locus_tag="STM1205" /note="putative RBS for ycfL; RegulonDB:STMS1H001466" CDS 1290755..1291129 /gene="ycfL" /locus_tag="STM1206" /note="similar to E. coli orf, hypothetical protein (AAC74188.1); Blastp hit to AAC74188.1 (125 aa), 80% identity in aa 1 - 125" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460176.1" /db_xref="GeneID:1252724" /translation="MIKGCIAVSLGLLLLTGCRSHPEIPVSDAQSLVMESTVLAAGVT AEPPELTASDIQPSASSRVYNERQEPITVHYRFYWYDARGLEMHPLEAPRSVTIPARS SVTLFGSANYLGAHKVRLYLYL" misc_feature 1290761..1291126 /gene="ycfL" /locus_tag="STM1206" /note="Uncharacterized conserved protein YcfL [Function unknown]; Region: YcfL; COG5633" /db_xref="CDD:444360" misc_feature order(1290821..1290835,1290848..1290850,1290881..1290883, 1290887..1290889,1290893..1290895,1291031..1291033, 1291109..1291123) /gene="ycfL" /locus_tag="STM1206" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:176923" gene 1291128..1291781 /gene="ycfM" /locus_tag="STM1207" /db_xref="GeneID:1252725" regulatory 1291128..1291133 /regulatory_class="ribosome_binding_site" /gene="ycfM" /locus_tag="STM1207" /note="putative RBS for ycfM; RegulonDB:STMS1H001467" CDS 1291143..1291781 /gene="ycfM" /locus_tag="STM1207" /note="similar to E. coli orf, hypothetical protein (AAC74189.1); Blastp hit to AAC74189.1 (213 aa), 89% identity in aa 1 - 213" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460177.1" /db_xref="GeneID:1252725" /translation="MTKMHRYAAIAALAIFLSGCMAQRQPAPVEEVKPAPEQPAQPPQ PPVVPSVPTIPQQPGPIEHEDQTGQPAPKVRHYDWNGAMQPLVSKMLQADGVTAGSVL LVDSVNNRTNGSLNANEATETLRNALANNGKFTLVSVQQLSMAKQQLGLSPQDSLGTR SKAIGIARNVGAQYVLYSSASGNVNAPALQMQLMLVQTGEIIWSGKGAVQQQ" misc_feature 1291335..1291778 /gene="ycfM" /locus_tag="STM1207" /note="Outer membrane lipoprotein LpoB, binds and activates PBP1b [Cell wall/membrane/envelope biogenesis]; Region: LpoB; COG3417" /db_xref="CDD:442643" gene 1291753..1292586 /gene="ycfN" /locus_tag="STM1208" /db_xref="GeneID:1252726" regulatory 1291753..1291758 /regulatory_class="ribosome_binding_site" /gene="ycfM" /locus_tag="STM1207" /note="putative RBS for ycfN; RegulonDB:STMS1H001468" CDS 1291762..1292586 /gene="ycfN" /locus_tag="STM1208" /note="similar to E. coli putative beta-glucosidase (AAC74190.1); Blastp hit to AAC74190.1 (274 aa), 67% identity in aa 5 - 273" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460178.1" /db_xref="GeneID:1252726" /translation="MRSNNNNPLTRDEILSRYFPQYRPAVATSQGLSGGSCIIAHDTH RVVLRRHHDPDAPPAHFLRHYRALSQLPASLAPRALFYTPGWMAVEYLHGVVNSALPD ADELAALLYHLHQQPRFGWRIALSPLLAQYWSCCDPARRTPFWLRRLKQLQKNGEPRP LRLAPLHMDVHGDNIVLTSAGLRLIDWEYAGDGDIALELAAVWVEDERQHRQLADAYA ARARIDARQLWRQIRLWHPWVIMLKAGWFEYRWRQTGEQQFIRLADETWRQLRMKG" misc_feature order(1291855..1291866,1291870..1291872,1291900..1291902, 1291906..1291908,1291990..1291992,1292026..1292037, 1292266..1292268,1292278..1292283,1292287..1292289, 1292314..1292319) /gene="ycfN" /locus_tag="STM1208" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270700" misc_feature 1292020..1292583 /gene="ycfN" /locus_tag="STM1208" /note="thiamine kinase; Provisional; Region: thiK; PRK10271" /db_xref="CDD:182349" gene 1292585..1293622 /gene="nagZ" /locus_tag="STM1209" /db_xref="GeneID:1252727" regulatory 1292585..1292590 /regulatory_class="ribosome_binding_site" /gene="nagZ" /locus_tag="STM1209" /note="putative RBS for nagZ; RegulonDB:STMS1H001469" CDS 1292597..1293622 /gene="nagZ" /locus_tag="STM1209" /note="similar to E. coli orf, hypothetical protein (AAC74191.1); Blastp hit to AAC74191.1 (341 aa), 91% identity in aa 1 - 341" /codon_start=1 /transl_table=11 /product="putative glycosyl hydrolase" /protein_id="NP_460179.1" /db_xref="GeneID:1252727" /translation="MGPVMLNVEGCELDAEEREILAHPLVGGLILFTRNYHDPEQLRE LVRQIRAASRNHLVVAVDQEGGRVQRFREGFTRLPAAQSFFALHGLEEGGRLAQEAGW LMASEMIAMDIDISFAPVLDVGHISAAIGERSYHADPAKALAMATRFIDGMHDAGMKT TGKHFPGHGAVTADSHKETPCDPRPETDIRGKDMSVFRTLISENKLDAIMPAHVIYRA IDPRPASGSPYWLKTVLRQELGFDGVIFSDDLSMEGAAIMGSYAERAQASLDAGCDMI LVCNNRKGAVSVLDNLSPIKAERVTRLYHKGSFSRRELMDSARWKTASAQLNQLHERW QEEKAGH" misc_feature 1292597..1293601 /gene="nagZ" /locus_tag="STM1209" /note="beta-hexosaminidase; Provisional; Region: PRK05337" /db_xref="CDD:235417" gene 1293636..1294189 /gene="ycfP" /locus_tag="STM1210" /db_xref="GeneID:1252728" regulatory 1293636..1293641 /regulatory_class="ribosome_binding_site" /gene="ycfP" /locus_tag="STM1210" /note="putative RBS for ycfP; RegulonDB:STMS1H001470" CDS 1293647..1294189 /gene="ycfP" /locus_tag="STM1210" /note="similar to E. coli orf, hypothetical protein (AAC74192.1); Blastp hit to AAC74192.1 (199 aa), 94% identity in aa 20 - 199" /codon_start=1 /transl_table=11 /product="putative esterase" /protein_id="NP_460180.1" /db_xref="GeneID:1252728" /translation="MIIYLHGFDSNSPGNHEKVLQLQFIDPDVRLVSYSTRHPKHDMQ HLLKEVDKMLQLNVDERPLICGVGLGGYWAERIGFLCDIRQVVFNPNLFPYENMEGKI DRPEEYADIATKCVTNFREKNRDRCLVILSRHDEALDSQRSAQALHPFYEIVWDEEQT HKFKNISPHLQRIKAFKTLG" misc_feature 1293647..1294186 /gene="ycfP" /locus_tag="STM1210" /note="hypothetical protein; Provisional; Region: PRK04940" /db_xref="CDD:179896" protein_bind 1294244..1294266 /note="putative binding site for FNR, RegulonDB: STMS1H000174" /bound_moiety="FNR" protein_bind 1294292..1294316 /note="putative binding site for FNR, RegulonDB: STMS1H000152" /bound_moiety="FNR" gene 1294327..1295748 /gene="ndh" /locus_tag="STM1211" /db_xref="GeneID:1252729" regulatory 1294327..1294335 /regulatory_class="minus_35_signal" /gene="ndh" /locus_tag="STM1211" /note="putative -35_signal for ndh; RegulonDB:STMLTH004478" regulatory 1294354..1294362 /regulatory_class="minus_10_signal" /gene="ndh" /locus_tag="STM1211" /note="putative -10_signal for ndh; RegulonDB:STMLTH004478" regulatory 1294432..1294437 /regulatory_class="ribosome_binding_site" /gene="ndh" /locus_tag="STM1211" /note="putative RBS for ndh; RegulonDB:STMS1H001471" CDS 1294444..1295748 /gene="ndh" /locus_tag="STM1211" /EC_number="1.6.99.3" /EC_number="7.1.1.2" /EC_number="1.16.1.-" /note="similar to E. coli respiratory NADH dehydrogenase (AAC74193.1); Blastp hit to AAC74193.1 (434 aa), 97% identity in aa 1 - 434; respiratory NADH dehydrogenase 2" /codon_start=1 /transl_table=11 /product="cupric reductase" /protein_id="NP_460181.1" /db_xref="GeneID:1252729" /translation="MTTPLKKIVIVGGGAGGLEMATQLGHKLGRKKKAKITLVDRNHS HLWKPLLHEVATGSLDEGVDALSYLAHARNHGFQFQLGSVMDIDREAKTITIAELRDE KGELLVPERKIAYDTLVMALGSTSNDFNTPGVKEHCIFLDNPHQARRFHQEMLNLFLK YSANLGANGKVNIAIVGGGATGVELSAELHNAVKQLHSYGYKGLTNDALNVTLVEAGE RILPALPPRISSAAHNELTKLGVRVLTQTMVTSADEGGLHTKEGEYIQADLMVWAAGI KAPDFMKEIGGLETNRINQLVVEPTLQTTRDPDIYAIGDCASCARPEGGFVPPRAQAA HQMATCAMKNILAQMNGKPLKAYQYKDHGSLVSLSNFSTVGSLMGNLTRGSMMIEGRI ARFVYISLYRMHQIALHGYFKTGLMMLVGSINRVIRPRLKLH" misc_feature 1294495..1295691 /gene="ndh" /locus_tag="STM1211" /note="NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]; Region: Ndh; COG1252" /db_xref="CDD:440864" gene 1295913..1296466 /gene="ycfJ" /locus_tag="STM1212" /db_xref="GeneID:1252730" regulatory 1295913..1295918 /regulatory_class="ribosome_binding_site" /gene="ycfJ" /locus_tag="STM1212" /note="putative RBS for ycfJ; RegulonDB:STMS1H001472" CDS 1295927..1296466 /gene="ycfJ" /locus_tag="STM1212" /note="similar to E. coli orf, hypothetical protein (AAC74194.1); Blastp hit to AAC74194.1 (179 aa), 94% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460182.1" /db_xref="GeneID:1252730" /translation="MNKSMLAGIGIGVAAALGVAAVASLNVFDRGPQYAQVISAKPIK ETVKTPRQECRNVTVTHRRPVQDENRIAGSVLGAVAGGVIGHQFGGGRGKDVATVVGA LGGGYAGNQIQGSMQESDTYTTTQQRCKTVYDKSEKMLGYDVTYKIGDQQGKIRMDKD PGTQIPLDGNGQLVLNNKA" misc_feature 1295945..1296454 /gene="ycfJ" /locus_tag="STM1212" /note="hypothetical protein; Provisional; Region: PRK11280" /db_xref="CDD:183072" gene complement(1296541..1297192) /gene="ycfQ" /locus_tag="STM1213" /db_xref="GeneID:1252731" CDS complement(1296541..1297176) /gene="ycfQ" /locus_tag="STM1213" /note="similar to E. coli orf, hypothetical protein (AAC74195.1); Blastp hit to AAC74195.1 (236 aa), 80% identity in aa 27 - 236" /codon_start=1 /transl_table=11 /product="putative transcriptional repressor (TetR/AcrR family)" /protein_id="NP_460183.1" /db_xref="GeneID:1252731" /translation="MTTDTTSCAKKSRGRPKVFDREAALDKAMTLFWQHGYEATSLAD LVEATGAKAPTLYAEFTNKKGLFRAVLDRYITRFASKHEAQLFCEEKSVESALEDYFT EIAACFTSTDTPAGCFMINTSATLAASSRDIARTVKSRHAMQEQTLIQFLRQRQERGE IPAHCNPQALAEYINCILQGMSISAREGATFEQLMQITRTTLRIWPELIKS" misc_feature complement(1296637..1297134) /gene="ycfQ" /locus_tag="STM1213" /note="DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:440920" regulatory complement(1297187..1297192) /regulatory_class="ribosome_binding_site" /gene="ycfQ" /locus_tag="STM1213" /note="putative RBS for ycfQ; RegulonDB:STMS1H001473" gene 1297406..1297675 /gene="ycfR" /locus_tag="STM1214" /db_xref="GeneID:1252732" regulatory 1297406..1297411 /regulatory_class="ribosome_binding_site" /gene="ycfR" /locus_tag="STM1214" /note="putative RBS for ycfR; RegulonDB:STMS1H001474" CDS 1297418..1297675 /gene="ycfR" /locus_tag="STM1214" /note="similar to E. coli orf, hypothetical protein (AAC74196.1); Blastp hit to AAC74196.1 (85 aa), 91% identity in aa 1 - 85" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_460184.1" /db_xref="GeneID:1252732" /translation="MKNVKTLIAAAVLSSLSFASFAAVEVQATPEGQQKFGTISANGG TNLGSLEDQLAQKAQEMGAKSFRITSVTGPNTLHGTAVIYK" misc_feature 1297514..1297669 /gene="ycfR" /locus_tag="STM1214" /note="YdgH/BhsA/McbA-like domain; Region: YdgH_BhsA-like; pfam07338" /db_xref="CDD:429417" gene complement(1297772..1298751) /gene="ycfS" /locus_tag="STM1215" /db_xref="GeneID:1252733" CDS complement(1297772..1298737) /gene="ycfS" /locus_tag="STM1215" /note="similar to E. coli orf, hypothetical protein (AAC74197.1); Blastp hit to AAC74197.1 (320 aa), 84% identity in aa 1 - 320" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460185.1" /db_xref="GeneID:1252733" /translation="MFNNTRLSRWWALLALTATIMLALPAQANTWPLPPPGSRLVGEN KFHVVEDDGGSLEAIAKKYNVGFLALLQANPGIDPYVPRAGSVLTIPLQTLLPDAPRE GIVINLAELRLYYYQPGKNTVTVYPIGIGQLGGDTLTPTMVTTISDKRANPTWTPTAN IRARYKAQGIDLPAVVPAGPDNPMGHHAIRLAAYGGVYLLHGTNADFGIGMRVSSGCI RLRDGDIETLFRQVTPGTKVNIINTPIKASVEPGGVRLVEVHQPLSKNIGDDPQVLPI VLNGPMQAFKDAPQTDAAVMEHVMEVRSGMPVDVTRQAEAKPQSL" misc_feature complement(1297814..1298701) /gene="ycfS" /locus_tag="STM1215" /note="L,D-transpeptidase; Provisional; Region: PRK10260" /db_xref="CDD:182341" regulatory complement(1298746..1298751) /regulatory_class="ribosome_binding_site" /gene="ycfS" /locus_tag="STM1215" /note="putative RBS for ycfS; RegulonDB:STMS1H001475" gene complement(1298885..1302349) /gene="mfd" /locus_tag="STM1216" /db_xref="GeneID:1252734" CDS complement(1298885..1302331) /gene="mfd" /locus_tag="STM1216" /note="similar to E. coli transcription-repair coupling factor; mutation frequency decline (AAC74198.1); Blastp hit to AAC74198.1 (1148 aa), 95% identity in aa 1 - 1148" /codon_start=1 /transl_table=11 /product="transcription-repair coupling factor" /protein_id="NP_460186.1" /db_xref="GeneID:1252734" /translation="MPEKQRYTLPTKAGDQRQLGELTGAACATLVAEIAERHAGPVVL IAPDMQNALRLHDEIRQFTDQMVMNLADWETLPYDSFSPHQEIISSRLSTLYQLPSMQ RGVLIVPVNTLMQRVCPHSYLHGHALVMKKGQRLSRDALRAQLDSAGYRHVDQVMEHG EYATRGALLDLFPMGSEQPYRLDFFDDEIDSLRLFDADTQRTLEEVEAINLLPAHEFP TDKAAIELFRSQWRDTFEVKRDAEHIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYF PANTLVVNTGSLETSAERFQADTLARFENRGVDPMRPLLPPEALWLRVDELFSELKRW PRLQLKTDHLPEKAANTNLGFQKLPDLAIQAQQKAPLDALRKFLESFSGPVIFSVESE GRREALGELLARIKIAPKRILRLDEAQDAGRYLMIGAAEHGFIDTQRNLALICESDLL GERVARRRLDSRRTINPDTLIRNLAELHVGQPVVHLEHGVGRYAGMTTLEAGGIKGEY LMLTYANDAKLYVPVSSLHLISRYAGGAEESAPLHKLGGDAWSRARQKAAEKVRDVAA ELLDIYAQRAAKEGFAFKHDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDR LVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEM LSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKLRDLGLLIVDEEHRFGVRHKE RIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSLVV REAILREILRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMND FHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHHQAYAWL LTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIRGAGELLGEEQSGSMETIGF SLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLLPDDFIPDVNTRLSFYKRI ASAKNENELEEIKVELIDRFGLLPDPARNLLDIARLRQQAQKLGIRKLEGNEKGGTIE FAEKNHVDPAWLIGLLQKQPQHFRLDGPTRLKFIQDLSERKTRIDWVRQFMQQLEENA IA" misc_feature complement(1298891..1302331) /gene="mfd" /locus_tag="STM1216" /note="transcription-repair coupling factor; Provisional; Region: PRK10689" /db_xref="CDD:182649" regulatory complement(1302344..1302349) /regulatory_class="ribosome_binding_site" /gene="mfd" /locus_tag="STM1216" /note="putative RBS for mfd; RegulonDB:STMS1H001476" gene 1302558..1303868 /gene="ycfU" /locus_tag="STM1217" /db_xref="GeneID:1252735" CDS 1302558..1303868 /gene="ycfU" /locus_tag="STM1217" /note="similar to E. coli orf, hypothetical protein (AAC74200.1); Blastp hit to AAC74200.1 (399 aa), 93% identity in aa 1 - 399" /codon_start=1 /transl_table=11 /product="integral membrane protein ABC transporter" /protein_id="NP_460187.3" /db_xref="GeneID:1252735" /translation="MSAFFRITLTNSYGSDIYAFRFRLYTRDFANSNQTDYMYQPVAL FIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQ AILSAEHGSLNPNQMPEKAVNLQGVNRIAPLTTGDVVLQSARSVAVGVMLGIDPAQKD PLTPYLVNVKQSELQPGKYNVILGEQLAGQLGVNRGDQIRLMVPSASQFTPMGRLPSQ RLFTVIGTFAANSEVDGYEMLVNIQDASRLMRYPAGNITGWRLWLDEPLQVDTLSQQT LPQGTKWQDWRERKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEV AILQTQGLTPRQIMMVFMVQGASAGIIGALLGAALGALLASQLNNLMPIIGAFLDGAA LPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE" misc_feature 1302669..1303865 /gene="ycfU" /locus_tag="STM1217" /note="lipoprotein-releasing ABC transporter permease subunit LolC; Region: PRK10814" /db_xref="CDD:182753" gene 1303848..1304562 /gene="ycfV" /locus_tag="STM1218" /db_xref="GeneID:1252736" regulatory 1303848..1303853 /regulatory_class="ribosome_binding_site" /gene="ycfV" /locus_tag="STM1218" /note="putative RBS for ycfV; RegulonDB:STMS1H001477" CDS 1303861..1304562 /gene="ycfV" /locus_tag="STM1218" /note="similar to E. coli putative ATP-binding component of a transport system (AAC74201.1); Blastp hit to AAC74201.1 (228 aa), 94% identity in aa 1 - 228" /codon_start=1 /transl_table=11 /product="ATP-binding protein ABC transporter" /protein_id="NP_460188.1" /db_xref="GeneID:1252736" /translation="MNKILLQCDNLCKRYQEGTVQTDVLHDVSFSIGEGEMMAIVGSS GSGKSTLLHLLGGLDTPTSGDVIFSGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF TALENVAMPLLIGKKKPAEIDARAREMLHAVGLEHRATHRPSELSGGERQRVAIARAL VNNPRLVLADEPTGNLDARNADSIFELLGELNRLQGTAFLVVTHDLQLAKRMSRQLEM RDGRLTAELSLMGAE" misc_feature 1303861..1304559 /gene="ycfV" /locus_tag="STM1218" /note="lipoprotein-releasing ABC transporter ATP-binding protein LolD; Region: lolD; PRK11629" /db_xref="CDD:183244" gene 1304548..1305806 /gene="ycfW" /locus_tag="STM1219" /db_xref="GeneID:1252737" regulatory 1304548..1304553 /regulatory_class="ribosome_binding_site" /gene="ycfV" /locus_tag="STM1218" /note="putative RBS for ycfW; RegulonDB:STMS1H001478" CDS 1304562..1305806 /gene="ycfW" /locus_tag="STM1219" /note="similar to E. coli putative kinase (AAC74202.1); Blastp hit to AAC74202.1 (414 aa), 92% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="integral membrane protein ABC transporter" /protein_id="NP_460189.1" /db_xref="GeneID:1252737" /translation="MASPLSLLIGLRFSRGRRRGGMVSLISVISTIGIALGVAVLIVG LSAMNGFERELNNRILAVVPHGEIEAVNQPWTNWREALAKVQKVPGIAAAAPYINFTG LVESGANLRAIQVKGVDPKQEQQLSALPSFVQNHAWDHFKAGEQQIIIGKGVADALNV KQGDWVSIMIPNANADHKLLQPKRVRLHVIGILQLSGQLDHSFAMIPLEDAQQYLDMG SSVSGIALKVHDVFNANKLVRDAGEVTNSYVYIKSWIGTYGYMYRDIQMIRAIMYLAM ILVIGVACFNIVSTLVMAVKDKSGDIAVLRTLGAKDGLIRAIFVWYGLLAGLLGSLIG VAIGVVVSLQLTAIINGIEKAIGHQFLSGDIYFIDFLPSELHWLDVVYVLVTALLLSL LASWYPARRASNIDPARVLSGQ" misc_feature 1304568..1305803 /gene="ycfW" /locus_tag="STM1219" /note="lipoprotein-releasing ABC transporter permease subunit LolE; Region: PRK11146" /db_xref="CDD:236860" gene 1305824..1306746 /gene="ycfX" /locus_tag="STM1220" /db_xref="GeneID:1252738" regulatory 1305824..1305829 /regulatory_class="ribosome_binding_site" /gene="ycfX" /locus_tag="STM1220" /note="putative RBS for ycfX; RegulonDB:STMS1H001479" CDS 1305835..1306746 /gene="ycfX" /locus_tag="STM1220" /note="similar to E. coli putative NAGC-like transcriptional regulator (AAC74203.1); Blastp hit to AAC74203.1 (303 aa), 92% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="putative regulator (NagC/XylR family)" /protein_id="NP_460190.1" /db_xref="GeneID:1252738" /translation="MYYGFDIGGTKIALGVFDSTRRLQWEKRVPTPHTSYSAFLDAVC ELVEEADQRFGVKGSVGIGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRL DNDANCFALSEAWDDEFTQYPLVMGLILGTGVGGGLVLNGKPITGQSYITGEFGHMRL PVDALTLMGFDFPLRRCGCGQMGCIENYLSGRGFAWLYQHYYDQSLQAPEIIALWEQG DEQAHAHVERYLDLLAVCLGNILTIVDPDLLVIGGGLSNFTAITTQLAERLPRHLLPV ARAPRIERARHGDAGGMRGAAFLHLTD" misc_feature 1305835..1306743 /gene="ycfX" /locus_tag="STM1220" /note="N-acetyl-D-glucosamine kinase; Provisional; Region: PRK13310" /db_xref="CDD:183967" gene 1306756..1307586 /gene="cobB" /locus_tag="STM1221" /db_xref="GeneID:1252739" regulatory 1306756..1306761 /regulatory_class="ribosome_binding_site" /gene="cobB" /locus_tag="STM1221" /note="putative RBS for cobB; RegulonDB:STMS1H001480" CDS 1306765..1307586 /gene="cobB" /locus_tag="STM1221" /note="homolog of virulence factor; similar to E. coli putative nicotinic acid mononucleotide:5,6-dimethylbenzimidazole (DMB) phosphoribosyltransferase (AAC74204.1); Blastp hit to AAC74204.1 (279 aa), 91% identity in aa 1 - 273" /codon_start=1 /transl_table=11 /product="putative nicotinate-nucleotide dimethylbenzimidazolephosphoribosltransferase" /protein_id="NP_460191.1" /db_xref="GeneID:1252739" /translation="MQSRRFHRLSRFRKNKRLLRERLRQRIFFRDRVVPEMMENPRVL VLTGAGISAESGIRTFRAADGLWEEHRVEDVATPEGFARNPGLVQTFYNARRQQLQQP EIQPNAAHLALAKLEEALGDRFLLVTQNIDNLHERAGNRNIIHMHGELLKVRCSQSGQ ILEWNGDVMPEDKCHCCQFPAPLRPHVVWFGEMPLGMDEIYMALSMADIFIAIGTSGH VYPAAGFVHEAKLHGAHTVELNLEPSQVGSEFEEKHYGPASQVVPEFVDKFLKGL" misc_feature 1306849..1307577 /gene="cobB" /locus_tag="STM1221" /note="NAD-dependent deacetylase; Provisional; Region: PRK00481" /db_xref="CDD:234777" misc_feature order(1306912..1306914,1306918..1306923,1306942..1306947, 1307092..1307094,1307149..1307154,1307158..1307160, 1307203..1307205,1307404..1307406,1307419..1307421, 1307485..1307490,1307533..1307535) /gene="cobB" /locus_tag="STM1221" /note="NAD+ binding site [chemical binding]; other site" /db_xref="CDD:238703" misc_feature order(1307155..1307157,1307203..1307205,1307326..1307328, 1307332..1307343,1307416..1307424) /gene="cobB" /locus_tag="STM1221" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238703" misc_feature order(1307227..1307229,1307236..1307238,1307284..1307286, 1307293..1307295) /gene="cobB" /locus_tag="STM1221" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:238703" gene complement(1307668..1308727) /gene="potD" /locus_tag="STM1222" /db_xref="GeneID:1252740" CDS complement(1307668..1308714) /gene="potD" /locus_tag="STM1222" /note="ABC superfamily (peri_perm); spermidine/putrescine-binding periplasmic protein SPBP. (SW:POTD_SALTY)" /codon_start=1 /transl_table=11 /product="spermidine/putrescine transporter" /protein_id="NP_460192.1" /db_xref="GeneID:1252740" /translation="MKKWSRHLLAAGALALGMSAAHASDNDTLYFYNWTEYVPPGLLE QFTKETGIKVIYSTYESNETMYAKLKTYKDGAYDLVVPSTYYVDKMRKEGMIQKIDKS KLTNFHNLDPEMLNKPFDPNNDYSVPYIWGATAIGVNSDAIDPKTITSWADLWKPEYK NSLLLTDDAREVFQMALRKLGYSGNTTDPKEIEAAYEELKKLMPNVAAFNSDNPANPY MEGEVNLGMVWNGSAFVARQAGTPLEVVWPKEGGIFWMDSLAIPANAKNKEGALKLIN FLLRPDVAKEVAETIGYPTPNLAARKLLSPEVANDKSLYPDAQTISKGEWQNDVGDAS AIYEEYYQKLKAGR" misc_feature complement(1307671..1308714) /gene="potD" /locus_tag="STM1222" /note="spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed; Region: potD; PRK09501" /db_xref="CDD:181913" misc_feature complement(order(1308004..1308006,1308010..1308012, 1308055..1308060,1308067..1308069,1308535..1308537, 1308541..1308552,1308583..1308585,1308592..1308597, 1308610..1308612,1308625..1308627)) /gene="potD" /locus_tag="STM1222" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:270378" misc_feature complement(order(1307836..1307838,1307944..1307946, 1307950..1307952,1308019..1308021,1308028..1308030, 1308613..1308615)) /gene="potD" /locus_tag="STM1222" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270378" regulatory complement(1308722..1308727) /regulatory_class="ribosome_binding_site" /gene="potD" /locus_tag="STM1222" /note="putative RBS for potD; RegulonDB:STMS1H001481" gene complement(1308739..1309532) /gene="potC" /locus_tag="STM1223" /db_xref="GeneID:1252741" CDS complement(1308739..1309518) /gene="potC" /locus_tag="STM1223" /note="ABC superfamily (membrane); similar to E. coli spermidine/putrescine transport system permease (AAC74208.1); Blastp hit to AAC74208.1 (264 aa), 96% identity in aa 1 - 258" /codon_start=1 /transl_table=11 /product="spermidine/putrescine transporter" /protein_id="NP_460193.1" /db_xref="GeneID:1252741" /translation="MIGRLLRGGFMTAIYAYLYIPIIILIVNSFNSSRFGINWQGFTT KWYELLVNNDSLLQAAQHSLTMAIFSATFATLIGSLTAVALYRYRFRGKPFVSGMLFV VMMSPDIVMAISLLVLFMLLGIQLGFWSLLFSHITFSLPFVVVTVYSRLKGFDVRMLE AAKDLGASEVTILRKIILPLAMPAVAAGWLLSFTLSMDDVVVSSFVTGPGYEILPLKI YSMVKVGVSPEVNALATVLLVLSLVMVIASQLIARDKTKGR" misc_feature complement(1308748..1309515) /gene="potC" /locus_tag="STM1223" /note="spermidine/putrescine ABC transporter membrane protein; Reviewed; Region: potC; PRK09500" /db_xref="CDD:236542" regulatory complement(1309527..1309532) /regulatory_class="ribosome_binding_site" /gene="potC" /locus_tag="STM1223" /note="putative RBS for potC; RegulonDB:STMS1H001482" gene complement(1309834..1310844) /gene="sifA" /locus_tag="STM1224" /db_xref="GeneID:1252742" CDS complement(1309834..1310844) /gene="sifA" /locus_tag="STM1224" /note="replication in macrophages; SIFA protein (SW:SIFA_SALTY)" /codon_start=1 /transl_table=11 /product="lysosomal glycoprotein (lgp)-containing structures" /protein_id="NP_460194.1" /db_xref="GeneID:1252742" /translation="MPITIGNGFLKSEILTNSPRNTKEAWWKVLWEKIKDFFFSTGKA KADRCLHEMLFAERAPTRERLTEIFFELKELACASQRDRFQVHNPHENDATIILRIMD QNEENELLRITQNTDTFSCEVMGNLYFLMKDRPDILKSHPQMTAMIKRRYSEIVDYPL PSTLCLNPAGAPILSVPLDNIEGYLYTELRKGHLDGWKAQEKATYLAAKIQSGIEKTT RILHHANISESTQQNAFLETMAMCGLKQLEIPPPHTHIPIEKMVKEVLLADKTFQAFL VTDPSTSQSMLAEIVEAISDQVFHAIFRIDPQAIQKMAEEQLTTLHVRSEQQSGCLCC FL" misc_feature complement(1309837..1310844) /gene="sifA" /locus_tag="STM1224" /note="type III secretion system effector SifA; Region: sifA; PRK09498" /db_xref="CDD:181911" gene complement(1311173..1312052) /gene="potB" /locus_tag="STM1225" /db_xref="GeneID:1252743" CDS complement(1311173..1312036) /gene="potB" /locus_tag="STM1225" /note="ABC superfamily (membrane); similar to E. coli spermidine/putrescine transport system permease (AAC74209.1); Blastp hit to AAC74209.1 (275 aa), 97% identity in aa 1 - 272" /codon_start=1 /transl_table=11 /product="spermidine/putrescine transporter" /protein_id="NP_460195.1" /db_xref="GeneID:1252743" /translation="MKNTSKFQNVVIVTIVGWLVLFVFLPNLMIIGTSFLTRDDASFV KMVFTLDNYARLLDPLYFEVLLHSLNMALIATLSCLVLGYPFAWFLAKLPEKIRPLLL FLLIVPFWTNSLIRIYGLKIFLSTKGYLNEFLLWLGVIDTPIRIMFTPSAVIIGLVYI LLPFMVMPLYSSIEKLDKPLLEAARDLGASKMQTFIRIIIPLTMPGIVAGCLLVMLPA MGLFYVSDLMGGAKNLLIGNVIKVQFLNIRDWPFGAATSITLTIVMGLMLLIYWRASR LLNKKVSDISD" misc_feature complement(1311191..1312036) /gene="potB" /locus_tag="STM1225" /note="spermidine/putrescine ABC transporter membrane protein; Reviewed; Region: potB; PRK09497" /db_xref="CDD:181910" misc_feature complement(order(1311245..1311247,1311254..1311259, 1311266..1311271,1311275..1311280,1311287..1311292, 1311320..1311325,1311356..1311361,1311368..1311379, 1311398..1311400,1311407..1311412,1311452..1311454, 1311503..1311505,1311512..1311517,1311527..1311529, 1311533..1311538,1311545..1311547,1311551..1311553, 1311557..1311562,1311635..1311637,1311680..1311685, 1311692..1311721,1311725..1311736,1311764..1311766, 1311779..1311784,1311791..1311796)) /gene="potB" /locus_tag="STM1225" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(1311362..1311379,1311635..1311637, 1311677..1311718)) /gene="potB" /locus_tag="STM1225" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(1311290..1311292,1311320..1311322, 1311329..1311331,1311359..1311361,1311575..1311577, 1311635..1311637)) /gene="potB" /locus_tag="STM1225" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(1311431..1311433,1311443..1311448, 1311464..1311502)) /gene="potB" /locus_tag="STM1225" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(1312020..1313156) /gene="potA" /locus_tag="STM1226" /db_xref="GeneID:1252744" CDS complement(1312020..1313156) /gene="potA" /locus_tag="STM1226" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of spermidine/putrescine transport (AAC74210.1); Blastp hit to AAC74210.1 (378 aa), 94% identity in aa 1 - 378" /codon_start=1 /transl_table=11 /product="spermidine/putrescine transporter" /protein_id="NP_460196.1" /db_xref="GeneID:1252744" /translation="MGQSKKLNNQPRSLSPLVLLSGISKSFDGKEVISQLDLTINNGE FLTLLGPSGCGKTTVLRLIAGLETVDAGHIMLDNQDITHVPAENRYVNTVFQSYALFP HMTVFENVAFGLRMQKTPAAEIAPRVTDALRMVQLEEFAQRKPHQLSGGQQQRVAIAR AVVNKPRLLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRI VVMRNGVIEQDGTPREIYEEPKNLFVAGFIGEINRFDATVIERLDEQRVRASVEGREC NIYVNFAVEPGQKLNVLLRPEDLRVEEINDDNHIEGLIGYVRERNYKGMTLESVVELE NGKMVMVSEFFNEDDPDFDHSLDQKMAISWVESWEVVLADEEHK" misc_feature complement(1312023..1313147) /gene="potA" /locus_tag="STM1226" /note="spermidine/putrescine ABC transporter ATP-binding protein PotA; Region: potA; PRK09452" /db_xref="CDD:236523" regulatory complement(1312047..1312052) /regulatory_class="ribosome_binding_site" /gene="potB" /locus_tag="STM1225" /note="putative RBS for potB; RegulonDB:STMS1H001483" gene 1313395..1314636 /gene="pepT" /locus_tag="STM1227" /db_xref="GeneID:1252745" regulatory 1313395..1313400 /regulatory_class="ribosome_binding_site" /gene="pepT" /locus_tag="STM1227" /note="putative RBS for pepT; RegulonDB:STMS1H001484" CDS 1313407..1314636 /gene="pepT" /locus_tag="STM1227" /EC_number="3.4.11.-" /note="peptidase T (SW:PEPT_SALTY); putative peptidase T" /codon_start=1 /transl_table=11 /product="aminotripeptidase" /protein_id="NP_460197.1" /db_xref="GeneID:1252745" /translation="MDKLLERFLHYVSLDTQSKSGVRQVPSTEGQWKLLRLLKQQLEE MGLVNITLSEKGTLMATLPANVEGDIPAIGFISHVDTSPDFSGKNVNPQIVENYRGGD IALGIGDEVLSPVMFPVLHQLLGQTLITTDGKTLLGADDKAGVAEIMTALAVLKGNPI PHGDIKVAFTPDEEVGKGAKHFDVEAFGAQWAYTVDGGGVGELEFENFNAASVNIKIV GNNVHPGTAKGVMVNALSLAARIHAEVPADEAPETTEGYEGFYHLASMKGTVDRAEMH YIIRDFDRKQFEARKRKMMEIAKKVGKGLHPDCYIELVIEDSYYNMREKVVEHPHILD IAQQAMRDCHITPEMKPIRGGTDGAQLSFMGLPCPNLFTGGYNYHGKHEFVTLEGMEK AVQVIVRIAELTAKRGQ" misc_feature 1313407..1314627 /gene="pepT" /locus_tag="STM1227" /note="tripeptide aminopeptidase PepT; Region: PRK05469" /db_xref="CDD:235484" misc_feature order(1313656..1313658,1314073..1314081,1314085..1314093, 1314097..1314099,1314103..1314105,1314109..1314114, 1314121..1314123,1314130..1314132,1314157..1314171, 1314184..1314186,1314190..1314216,1314463..1314465, 1314541..1314543) /gene="pepT" /locus_tag="STM1227" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349887" gene 1314636..1315974 /locus_tag="STM1228" /db_xref="GeneID:1252746" regulatory 1314636..1314641 /regulatory_class="ribosome_binding_site" /locus_tag="STM1228" /note="putative RBS for STM1228; RegulonDB:STMS1H001485" CDS 1314640..1315974 /locus_tag="STM1228" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460198.1" /db_xref="GeneID:1252746" /translation="MLRIVVKRFIIYGGIFSAINFSAWSAEYTPSWSQRQQQSAACFM TGDETCMTFIDDAVRLASQQYGKRSIQLVRSLLLQSDIYQWLGKPELTPQMLLRARAI MKTFPADTYPGDRADMFEHLAAFNVYSDDRYIEYSPTEQWRYEIKVDYRQQIAWQEQA LTWRLKDKKASTEALVYTLNRMRDAYSDALEERDVECDSARKAYYLAKIDATERQWLS VILRDKTWDNRERVASFLQQKADIAYNAGHISEAINALSQALKIEQTLYGAEFGEMTV DSNNLAGFYAQGHHYKEAKDLYLKLIAYYQSRLTPMATVISRLRFYLPENIDLDSTSL YLPLLAEYKRRQSDVSMVLYGISLLYQSNQELEQAKDFAERAFTLDAVAYPAKMQYER LQQLANIAEGLGDNVLARRYRQMSFRHRMAHSIYPGDPQYNDVAKPGGDRCG" misc_feature <1315174..1315767 /locus_tag="STM1228" /note="Lipopolysaccharide biosynthesis regulator YciM/LapB, contains six TPR domains and a C-terminal metal-binding domain [Cell wall/membrane/envelope biogenesis]; Region: LapB; COG2956" /db_xref="CDD:442196" gene complement(1316014..1317148) /gene="ycfD" /locus_tag="STM1229" /db_xref="GeneID:1252747" CDS complement(1316014..1317135) /gene="ycfD" /locus_tag="STM1229" /note="similar to E. coli orf, hypothetical protein (AAC74212.1); Blastp hit to AAC74212.1 (376 aa), 93% identity in aa 4 - 376" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460199.1" /db_xref="GeneID:1252747" /translation="MEYQLTLNWPDFLERHWQKRPVVLKRGFSNFIDPLSPDELAGLA MESEIDSRLVSHQDGKWQVSHGPFESYDHLGESNWSLLVQAVNHWHEPTAALMRPFRA LPDWRIDDLMISFSVPGGGVGPHLDQYDVFIIQGTGRRRWRVGEKLQMRQHCPHPDLL QVEPFEAIIDEELEPGDILYIPPGFPHEGYALENAMNYSVGFRAPNSRELISGFADYV LQRELGNTYYSDPDMPSRKHPADILPQEMDKLRNMMLDLINQPAHFQQWLGEFLSQSR HELDIAPPEPPYQPDEIYDALKQGEVLVRLGGLRVLRIGDEVYANGEKIDSPHRPALE ALASHIALTAENFGDALEDPSFLAMLAALVNSGYWFFEG" misc_feature complement(1316308..1317117) /gene="ycfD" /locus_tag="STM1229" /note="Ribosomal protein L16 Arg81 hydroxylase, contains JmjC domain [Translation, ribosomal structure and biogenesis]; Region: RoxA; COG2850" /db_xref="CDD:442098" misc_feature complement(1316026..1316370) /gene="ycfD" /locus_tag="STM1229" /note="ROXA-like winged helix; Region: ROXA-like_wH; pfam20514" /db_xref="CDD:466663" regulatory complement(1317143..1317148) /regulatory_class="ribosome_binding_site" /gene="ycfD" /locus_tag="STM1229" /note="putative RBS for ycfD; RegulonDB:STMS1H001486" gene complement(1317216..1318679) /gene="phoQ" /locus_tag="STM1230" /db_xref="GeneID:1252748" CDS complement(1317216..1318679) /gene="phoQ" /locus_tag="STM1230" /EC_number="2.7.3.-" /note="ligand is Mg+; virulence sensor protein PHOQ (SW:PHOQ_SALTY)" /codon_start=1 /transl_table=11 /product="sensory kinase protein in two-component regulatory system with PhoP" /protein_id="NP_460200.1" /db_xref="GeneID:1252748" /translation="MNKFARHFLPLSLRVRFLLATAGVVLVLSLAYGIVALVGYSVSF DKTTFRLLRGESNLFYTLAKWENNKISVELPENLDMQSPTMTLIYDETGKLLWTQRNI PWLIKSIQPEWLKTNGFHEIETNVDATSTLLSEDHSAQEKLKEVREDDDDAEMTHSVA VNIYPATARMPQLTIVVVDTIPIELKRSYMVWSWFVYVLAANLLLVIPLLWIAAWWSL RPIEALAREVRELEDHHREMLNPETTRELTSLVRNLNQLLKSERERYNKYRTTLTDLT HSLKTPLAVLQSTLRSLRNEKMSVSKAEPVMLEQISRISQQIGYYLHRASMRGSGVLL SRELHPVAPLLDNLISALNKVYQRKGVNISMDISPEISFVGEQNDFVEVMGNVLDNAC KYCLEFVEISARQTDDHLHIFVEDDGPGIPHSKRSLVFDRGQRADTLRPGQGVGLAVA REITEQYAGQIIASDSLLGGARMEVVFGRQHPTQKEE" misc_feature complement(1317222..1318673) /gene="phoQ" /locus_tag="STM1230" /note="two-component system sensor histidine kinase PhoQ; Region: PRK10815" /db_xref="CDD:182754" gene complement(1318679..1319365) /gene="phoP" /locus_tag="STM1231" /db_xref="GeneID:1252749" CDS complement(1318679..1319353) /gene="phoP" /locus_tag="STM1231" /note="transcribes genes expressed under low Mg+ concentration (OmpR family); virulence transcriptional regulatory protein PHOP. (SW:PHOP_SALTY)" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with PhoQ" /protein_id="NP_460201.1" /db_xref="GeneID:1252749" /translation="MMRVLVVEDNALLRHHLKVQLQDSGHQVDAAEDAREADYYLNEH LPDIAIVDLGLPDEDGLSLIRRWRSSDVSLPVLVLTAREGWQDKVEVLSSGADDYVTK PFHIEEVMARMQALMRRNSGLASQVINIPPFQVDLSRRELSVNEEVIKLTAFEYTIME TLIRNNGKVVSKDSLMLQLYPDAELRESHTIDVLMGRLRKKIQAQYPHDVITTVRGQG YLFELR" misc_feature complement(1318682..1319350) /gene="phoP" /locus_tag="STM1231" /note="two-component system response regulator PhoP; Region: PRK10816" /db_xref="CDD:182755" regulatory complement(1319360..1319365) /regulatory_class="ribosome_binding_site" /gene="phoP" /locus_tag="STM1231" /note="putative RBS for phoP; RegulonDB:STMS1H001487" gene complement(1319477..1320862) /gene="purB" /locus_tag="STM1232" /db_xref="GeneID:1252750" CDS complement(1319477..1320847) /gene="purB" /locus_tag="STM1232" /EC_number="4.3.2.2" /note="similar to E. coli adenylosuccinate lyase (AAC74215.1); Blastp hit to AAC74215.1 (456 aa), 94% identity in aa 1 - 456" /codon_start=1 /transl_table=11 /product="adenylosuccinate lyase" /protein_id="NP_460202.1" /db_xref="GeneID:1252750" /translation="MELSSLTAVSPVDGRYGDKVSALRGIFSEYGLLKFRVQVEVRWL QKLAAHAAIKEVPAFAADANGYLDTLVANFNEEDAARIKTIERTTNHDVKAVEYFLKE KVAAIPALHDVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQVINAVKDLATQ YRDIPLLSRTHGQPATPSTLGKEMANVAYRMERQFRQLNQVEILGKINGAVGNYNAHI AAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAELFDCIARFNTILIDFDRDVW GYIALNHFKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLHHLANKLPVSRWQ RDLTDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTV MRRYGIEKPYEKLKELTRGKRVDAEGMKQFIDSLALPEAEKTRLKAMTPANYIGRAVT LVDELK" misc_feature complement(1319480..1320847) /gene="purB" /locus_tag="STM1232" /note="adenylosuccinate lyase; Provisional; Region: PRK09285" /db_xref="CDD:236452" gene complement(1320851..1321550) /gene="ycfC" /locus_tag="STM1233" /db_xref="GeneID:1252751" CDS complement(1320851..1321498) /gene="ycfC" /locus_tag="STM1233" /note="similar to E. coli orf, hypothetical protein (AAC74216.1); Blastp hit to AAC74216.1 (213 aa), 94% identity in aa 1 - 213" /codon_start=1 /transl_table=11 /product="unknown membrane associated protein" /protein_id="NP_460203.1" /db_xref="GeneID:1252751" /translation="MIVAKNYYDITLALSGICQSARLVQQLAHQGHCDADALHVSLNS VIDMNPSSTLGVFGGSEANLRLGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLS SAKGALNTLGDRINGLQRQLDHFDLQSDTLMSAMAGIYVDVISPLGPRIQVTGSPAVL QSPQVQAKVRASLLAGIRAAVLWHQVGGGRLQLMFSRHRLTTQAKQILAHLTPEL" misc_feature complement(1320866..1321489) /gene="ycfC" /locus_tag="STM1233" /note="lysogenization regulator HflD; Region: PRK00218" /db_xref="CDD:234690" regulatory complement(1320857..1320862) /regulatory_class="ribosome_binding_site" /gene="ycfC" /locus_tag="STM1233" /note="putative RBS for purB; RegulonDB:STMS1H001488" regulatory complement(1321502..1321507) /regulatory_class="ribosome_binding_site" /gene="ycfC" /locus_tag="STM1233" /note="putative RBS for ycfC; RegulonDB:STMS1H001489" regulatory complement(1321524..1321532) /regulatory_class="minus_10_signal" /gene="ycfC" /locus_tag="STM1233" /note="putative -10_signal for ycfC; RegulonDB:STMLTH004479" regulatory complement(1321542..1321550) /regulatory_class="minus_35_signal" /gene="ycfC" /locus_tag="STM1233" /note="putative -35_signal for ycfC; RegulonDB:STMLTH004479" gene complement(1321579..1322739) /gene="trmU" /locus_tag="STM1234" /db_xref="GeneID:1252752" CDS complement(1321579..1322730) /gene="trmU" /locus_tag="STM1234" /EC_number="2.1.1.61" /note="similar to E. coli orf, hypothetical protein (AAC74217.1); Blastp hit to AAC74217.1 (383 aa), 94% identity in aa 1 - 383" /codon_start=1 /transl_table=11 /product="tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase" /protein_id="NP_460204.3" /db_xref="GeneID:1252752" /translation="MIEYAALKFNVASIPMSESPKKVIVGMSGGVDSSVSAWLLQQQG YQVEGLFMKNWEEDDGEEYCTAAADLADAQAVCDKLGIELHTVNFAAEYWDNVFELFL EEYKAGRTPNPDILCNKEIKFKAFLEFAAEDLGADYIATGHYVRRADVNGKSRLLRGL DGNKDQSYFLYTLGHEQIAQSLFPVGELEKPQVRKIAEDLGLVTAKKKDSTGICFIGE RKFRDFLGRYLPAQPGKIITVDGDEIGEHQGLMYHTLGQRKGLGIGGTKDGSEDPWYV VDKDVENNVLIVAQGHEHPRLMSVGLIAQQLHWVDREPFTGTLRCTVKTRYRQTDIPC TINALNDDRIEVIFDEPVAAVTPGQSAVFYSGEVCLGGGIIEQRLPLTV" misc_feature complement(1321591..1322670) /gene="trmU" /locus_tag="STM1234" /note="tRNA U34 2-thiouridine synthase MnmA/TrmU, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]; Region: MnmA; COG0482" /db_xref="CDD:440250" regulatory complement(1322734..1322739) /regulatory_class="ribosome_binding_site" /gene="trmU" /locus_tag="STM1234" /note="putative RBS for trmU; RegulonDB:STMS1H001490" gene complement(1322739..1323210) /gene="ymfB" /locus_tag="STM1235" /db_xref="GeneID:1252753" CDS complement(1322739..1323200) /gene="ymfB" /locus_tag="STM1235" /note="similar to E. coli putative phosphohydrolase (AAC74218.1); Blastp hit to AAC74218.1 (153 aa), 84% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="putative MutT-like protein" /protein_id="NP_460205.1" /db_xref="GeneID:1252753" /translation="MFKPHVTVACIVHAEDKFLVVEETINGKSLWNQPAGHLEADETL AQAAARELWEETGITAQPQYFIRMHQWIAPDKTPFLRFLFAIKLDHICATDPHDNDID CCRWVSADEILNAPNLRSPLVAESVRSYQTGQRYPLSIVGEFNWPFTEGVK" misc_feature complement(1322778..1323185) /gene="ymfB" /locus_tag="STM1235" /note="uncharacterized NUDIX hydrolase subfamily; Region: NUDIX_Hydrolase; cd03675" /db_xref="CDD:467543" regulatory complement(1323205..1323210) /regulatory_class="ribosome_binding_site" /gene="ymfB" /locus_tag="STM1235" /note="putative RBS for ymfB; RegulonDB:STMS1H001491" gene complement(1323212..1323549) /locus_tag="STM1236" /db_xref="GeneID:1252754" CDS complement(1323212..1323541) /locus_tag="STM1236" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460206.1" /db_xref="GeneID:1252754" /translation="MKRLLIAFALLTPLSVNAASFDCQKAQAADEKAICAHLTLNDKD VEMHTKYQFLKGLFAMGSRGALQDAQQSWLKQRQQCKADVTCLTKAYNERLKQLDVIY DHIDKPL" misc_feature complement(1323233..1323541) /locus_tag="STM1236" /note="Lysozyme inhibitor LprI [Defense mechanisms]; Region: LprI; COG4461" /db_xref="CDD:443559" gene complement(1323538..1324203) /gene="ymfC" /locus_tag="STM1237" /db_xref="GeneID:1252755" CDS complement(1323538..1324203) /gene="ymfC" /locus_tag="STM1237" /note="similar to E. coli orf, hypothetical protein (AAC74219.1); Blastp hit to AAC74219.1 (207 aa), 83% identity in aa 1 - 205" /codon_start=1 /transl_table=11 /product="putative ribosomal large subunit pseudouridine synthase" /protein_id="NP_460207.1" /db_xref="GeneID:1252755" /translation="MRQLISSENTMQKTSFRNHYVKRFSSRQASKSRKENQPKRVVLF NKPYDVLPQFTDEAGRRTLKDFIPVQGVYAAGRLDRDSEGLLVLTNDGALQARLTQPG KRTGKIYYVQVEGIPDNAALQALRTGVTLNDGPTLPAGIEIVAEPDWLWPRTPPIRER KNIPTSWLKVTLYEGRNRQVRRMTAHVGHPTLRLIRYSMGDYTLNGLDNGQWREIAQE KDR" misc_feature complement(1323559..1324203) /gene="ymfC" /locus_tag="STM1237" /note="23S rRNA pseudouridine(2457) synthase RluE; Region: PRK11394" /db_xref="CDD:183115" regulatory complement(1323544..1323549) /regulatory_class="ribosome_binding_site" /locus_tag="STM1236" /note="putative RBS for STM1236; RegulonDB:STMS1H001492" protein_bind 1324130..1324144 /note="putative binding site for FruR, RegulonDB: STMS1H000184" /bound_moiety="FruR" gene 1324219..1325625 /gene="icdA" /locus_tag="STM1238" /db_xref="GeneID:1252756" regulatory 1324219..1324227 /regulatory_class="minus_35_signal" /gene="icdA" /locus_tag="STM1238" /note="putative -35_signal for icdA; RegulonDB:STMLTH004480" protein_bind 1324238..1324300 /gene="icdA" /locus_tag="STM1238" /note="putative binding site for ArcA, RegulonDB: STMS1H000016" /bound_moiety="ArcA" regulatory 1324246..1324254 /regulatory_class="minus_10_signal" /gene="icdA" /locus_tag="STM1238" /note="putative -10_signal for icdA; RegulonDB:STMLTH004480" regulatory 1324363..1324368 /regulatory_class="ribosome_binding_site" /gene="icdA" /locus_tag="STM1238" /note="putative RBS for icdA; RegulonDB:STMS1H001493" CDS 1324375..1325625 /gene="icdA" /locus_tag="STM1238" /EC_number="1.1.1.42" /note="specific for NADP+; similar to E. coli isocitrate dehydrogenase, specific for NADP+ (AAC74220.1); Blastp hit to AAC74220.1 (416 aa), 96% identity in aa 1 - 416" /codon_start=1 /transl_table=11 /product="isocitrate dehydrogenase in e14 prophage" /protein_id="NP_460208.1" /db_xref="GeneID:1252756" /translation="MESKVVVPVEGKKITLQNGKLNVPENPIIPFIEGDGIGVDVTPA MLKVVDAAVEKAYKGERKISWMEIYTGEKSTQVYGQDVWLPAETLDLIRDYRVAIKGP LTTPVGGGIRSLNVALRQELDLYVCLRPVRYYQGTPSPVKHPELTDMVIFRENSEDIY AGIEWKADSADAEKVIKFLREEMGVKKIRFPEHCGIGIKPCSEEGTKRLVRAAIEYAI TNDRDSVTLVHKGNIMKFTEGAFKDWGYQLARDEFGGELIDGGPWLKIKNPNTGKEIV VKDVIADAFLQQILLRPAEYDVIACMNLNGDYISDALAAQVGGIGIAPGANIGDECAL FEATHGTAPKYAGQDKVNPGSIILSAEMMLRHMQWFEAADLIVKGMEGAIAAKTVTYD FERLMEGAKLLKCSEFGDAIIANM" misc_feature 1324396..1325622 /gene="icdA" /locus_tag="STM1238" /note="isocitrate dehydrogenase; Reviewed; Region: PRK07006" /db_xref="CDD:180792" gene 1326065..1327197 /locus_tag="STM1239" /db_xref="GeneID:1252757" regulatory 1326065..1326070 /regulatory_class="ribosome_binding_site" /locus_tag="STM1239" /note="putative RBS for STM1239; RegulonDB:STMS1H001494" CDS 1326073..1327197 /locus_tag="STM1239" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460209.1" /db_xref="GeneID:1252757" /translation="MLKPICHSGSIKVPEYLETDKEKNAGRTPLSSDIQQVRNVVEDV PLFPESRTARGSVSAAYRLSFDEVFCGLSNEERKKVYGRLFGKQVLAHIHSRCQRDAD IIREKALRRISRECGAEIDCALLLNKMVDILQNARLTINFNAAKIDFVSLLKNKEYLN SYALGCRPGDLPAYNVGRDSVETKAFELEKLADSPYAPYGQTGGFSVAYTPNSRTFST TSRPIYAALDFLNGENGGASAYGKSFFELNDNVKTNCTFSPFDIYGHRFGLDTSKLST FWHMENLIASCQNDFFGYNCFKSLVKMAKDEKFLAHSNYGKGYEGNYIEAHIHGDVCL FRDIKHVYLSLQENSYSKSQLYDYAKQINQALNRDCIILY" misc_feature 1326481..>1327086 /locus_tag="STM1239" /note="Protein of unknown function (DUF3626); Region: DUF3626; pfam12294" /db_xref="CDD:403494" gene complement(1328179..1328972) /gene="envF" /locus_tag="STM1240" /db_xref="GeneID:1252758" CDS complement(1328179..1328967) /gene="envF" /locus_tag="STM1240" /note="probable lipoprotein ENVF precursor (SW:ENVF_SALTY)" /codon_start=1 /transl_table=11 /product="putative envelope lipoprotein" /protein_id="NP_460210.1" /db_xref="GeneID:1252758" /translation="MNKIHVTYKNLLLPITFIAATLISACDNDKDAMAEAEKNQEKYM QKIQQKEHQQSMFFYDKAEMQKAIANINAKGGANLAIIEVRFFKGGYSFIRQSVNTPA KVEVFKFNNGYWGGPSPVNLTIFGTITEEQKQEALKEALFKFDSINFSIIPERIQETI KRANASGIISVTEDSDIVVRAEIAHNGEFVYDITITAKNTARAVMTLNKDGSIAGYEI KEPFDPKKEAEKAQQLVEQSRKDIESQRKKAAGKMNEIQQTFKK" regulatory complement(1328967..1328972) /regulatory_class="ribosome_binding_site" /gene="envF" /locus_tag="STM1240" /note="putative RBS for envF; RegulonDB:STMS1H001495" gene complement(1329456..1329702) /gene="msgA" /locus_tag="STM1241" /db_xref="GeneID:1252759" CDS complement(1329456..1329695) /gene="msgA" /locus_tag="STM1241" /note="virulence protein MSGA (SW:MSGA_SALTY)" /codon_start=1 /transl_table=11 /product="macrophage survival gene; reduced mouse virulence" /protein_id="NP_460211.1" /db_xref="GeneID:1252759" /translation="MFVELVYDKRNVEGLPGAREIILNELTKRVHQLFPDAQVKVKPM QANALNSDCTKTEKERLHRMLEEMFEEADMWLVAE" misc_feature complement(1329468..1329650) /gene="msgA" /locus_tag="STM1241" /note="DinI-like family; Region: DinI; pfam06183" /db_xref="CDD:428810" regulatory complement(1329697..1329702) /regulatory_class="ribosome_binding_site" /gene="msgA" /locus_tag="STM1241" /note="putative RBS for msgA; RegulonDB:STMS1H001496" gene complement(1329886..1330411) /gene="envE" /locus_tag="STM1242" /db_xref="GeneID:1252760" CDS complement(1329886..1330407) /gene="envE" /locus_tag="STM1242" /note="probable lipoprotein ENVE precursor. (SW:ENVE_SALTY)" /codon_start=1 /transl_table=11 /product="putative envelope protein" /protein_id="NP_460212.1" /db_xref="GeneID:1252760" /translation="MTLLSGKTTLVLCLSSILCGCTTNGLPTPYSINLSFPVITQNQI NSGGYYINDAEQIRTTDGLCLDAGPDQQNRLTLRECKHVQSQLFSFHRDRITQGEKCL DAAGQGTKEGTPIILYSCTGNDNQRWLTDDNKIKGKQSRKCLGTNSIIVRKGDPVVLA DCDFSRALEFTIR" misc_feature complement(1329922..1330227) /gene="envE" /locus_tag="STM1242" /note="ricin B-type lectin domain, beta-trefoil fold; Region: beta-trefoil_Ricin-like; cl49609" /db_xref="CDD:483949" misc_feature complement(order(1330150..1330155,1330174..1330176, 1330180..1330182,1330204..1330212)) /gene="envE" /locus_tag="STM1242" /note="sugar binding site [chemical binding]; other site" /db_xref="CDD:467293" misc_feature complement(order(1330030..1330035,1330054..1330056, 1330060..1330062,1330096..1330101)) /gene="envE" /locus_tag="STM1242" /note="sugar binding site [chemical binding]; other site" /db_xref="CDD:467293" regulatory complement(1330406..1330411) /regulatory_class="ribosome_binding_site" /gene="envE" /locus_tag="STM1242" /note="putative RBS for envE; RegulonDB:STMS1H001497" gene complement(1330822..1331045) /locus_tag="STM1243" /db_xref="GeneID:1252761" CDS complement(1330822..1331034) /locus_tag="STM1243" /note="cold shock-like protein CSPH. (SW:CSPH_SALTY)" /codon_start=1 /transl_table=11 /product="homology with cold shock proteins" /protein_id="NP_460213.1" /db_xref="GeneID:1252761" /translation="MSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISACRQHETEA LIPGIRVEFCRINGLRGPTAANVYLS" misc_feature complement(1330825..1331034) /locus_tag="STM1243" /note="cold shock-like protein CspF; Provisional; Region: PRK15463" /db_xref="CDD:185360" regulatory complement(1331040..1331045) /regulatory_class="ribosome_binding_site" /locus_tag="STM1243" /note="putative RBS for STM1243; RegulonDB:STMS1H001498" gene complement(1331166..1331437) /gene="pagD" /locus_tag="STM1244" /db_xref="GeneID:1252762" CDS complement(1331166..1331429) /gene="pagD" /locus_tag="STM1244" /note="virulence protein PAGD precursor. (SW:PAGD_SALTY)" /codon_start=1 /transl_table=11 /product="PhoP regulated" /protein_id="NP_460214.1" /db_xref="GeneID:1252762" /translation="MKHHAFMLWSLLIFSFHVLASSGHCSGLQQASWDIFIYDFGSKT PQPPTNTDKKQARQISSPSCPTTKPMMSAPVNDARKGNTFSRT" regulatory complement(1331432..1331437) /regulatory_class="ribosome_binding_site" /gene="pagD" /locus_tag="STM1244" /note="putative RBS for pagD; RegulonDB:STMS1H001499" gene 1331478..1331655 /locus_tag="STM1245" /note="pseudogene; in-frame stop following codon 4" /pseudo /db_xref="GeneID:1252763" gene 1332234..1332798 /gene="pagC" /locus_tag="STM1246" /db_xref="GeneID:1252764" regulatory 1332234..1332239 /regulatory_class="ribosome_binding_site" /gene="pagC" /locus_tag="STM1246" /note="putative RBS for pagC; RegulonDB:STMS1H001500" CDS 1332241..1332798 /gene="pagC" /locus_tag="STM1246" /note="PhoP regulated; virulence membrane protein PAGC precursor. (SW:PAGC_SALTY)" /codon_start=1 /transl_table=11 /product="reduced macrophage survival protein" /protein_id="NP_460215.1" /db_xref="GeneID:1252764" /translation="MKNIILSTLVITTSVLVVNVAQADTNAFSVGYAQSKVQDFKNIR GVNVKYRYEDDSPVSFISSLSYLYGDRQASGSVEPEGIHYHDKFEVKYGSLMVGPAYR LSDNFSLYALAGVGTVKATFKEHSTQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVV DVGYEGSNISSTKINGFNVGVGYRF" misc_feature 1332241..1332795 /gene="pagC" /locus_tag="STM1246" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" gene 1333199..1333272 /locus_tag="STM1247" /db_xref="GeneID:1252765" tRNA 1333199..1333272 /locus_tag="STM1247" /product="tRNA-OTHER" /db_xref="GeneID:1252765" gene 1333532..1333707 /locus_tag="STM1248" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1252766" gene complement(1334035..1334385) /locus_tag="STM1249" /db_xref="GeneID:1252767" CDS complement(1334035..1334379) /locus_tag="STM1249" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460216.1" /db_xref="GeneID:1252767" /translation="MMKRKLIPFTLFLAALSASTTSIAASQEISKSIYTCNDNQVMEV IYVNTEAGNAYAIISQVNEMIPMRLMKMASGANYEAIDKNYTYKLYTKGKTAELVEGD DKPVLSNCSLAN" misc_feature complement(1334041..1334379) /locus_tag="STM1249" /note="c-type lysozyme inhibitor; Region: PRK13791" /db_xref="CDD:237508" regulatory complement(1334380..1334385) /regulatory_class="ribosome_binding_site" /locus_tag="STM1249" /note="putative RBS for STM1249; RegulonDB:STMS1H001502" gene 1335077..1335354 /locus_tag="STM1250" /db_xref="GeneID:1252768" regulatory 1335077..1335082 /regulatory_class="ribosome_binding_site" /locus_tag="STM1250" /note="putative RBS for STM1250; RegulonDB:STMS1H001503" CDS 1335082..1335354 /locus_tag="STM1250" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460217.1" /db_xref="GeneID:1252768" /translation="MFLVVLPPVAEKDNDNVTVAETDEYDDREFYFWRPYFLPKGRPK AALGLIMEKGVGHCHNQPVYINAIDNHYQFGWWRKIVKMKGQRKWQ" gene 1335498..1335973 /locus_tag="STM1251" /db_xref="GeneID:1252769" regulatory 1335498..1335503 /regulatory_class="ribosome_binding_site" /locus_tag="STM1251" /note="putative RBS for STM1251; RegulonDB:STMS1H001504" CDS 1335506..1335973 /locus_tag="STM1251" /note="similar to E. coli heat shock protein (AAC76710.1); Blastp hit to AAC76710.1 (137 aa), 33% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="putative molecular chaperone (small heat shock protein)" /protein_id="NP_460218.1" /db_xref="GeneID:1252769" /translation="MALRTLSALPVFADSLFSDRFNRIDRLFSQLTGDTPVAATPAYD LQKRDANNYLLTVSVPGWKEEELEIETVGGNLNITGKHTEETVEDQTHWIYRGIRKAD FQLSFSLPEHAKVNNAKLEQGLLLVEIYQEIPESEKPKKIAIESKPKAIEHKS" misc_feature 1335626..1335898 /locus_tag="STM1251" /note="Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins. IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation...; Region: ACD_IbpA-B_like; cd06470" /db_xref="CDD:107227" misc_feature order(1335632..1335646,1335671..1335673,1335677..1335679, 1335683..1335688,1335818..1335820,1335872..1335877) /locus_tag="STM1251" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:107227" gene 1336306..1337355 /locus_tag="STM1252" /db_xref="GeneID:1252770" regulatory 1336306..1336311 /regulatory_class="ribosome_binding_site" /locus_tag="STM1252" /note="putative RBS for STM1252; RegulonDB:STMS1H001505" CDS 1336312..1337355 /locus_tag="STM1252" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460219.1" /db_xref="GeneID:1252770" /translation="MKLALVNRQVILPESGTESFQCHASTLVRLPCGTLVAAWFAGLR EGSEDTAIWLSRYEHNIWTTPQRVAAREGEAHWNPVLFYPSDKLWLFYKVGSDVHVWK TWFITSSDRGFTWSTPAPLVNDDILPRGPVKNKLLLASNGAWIAPGSIESPERWRAFV DRSSDEGKHWSISFVPLEPDNAISGTNVALWDGIKKGRLWECCLENLLRWDGVIQPTL WESSPGHIHMLLRSTRGAIFRSDSIDYGATWSVARATSLPNNNSGIDLVSMQDGTLIL ALNPVNGNWGKRYPLSLIASQDNGESWLPLLDLESDHGEYSYPAIISEGGIVHITYTW NRKNIVYCRLQTV" misc_feature 1336321..1337343 /locus_tag="STM1252" /note="Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism, Cell wall/membrane/envelope biogenesis]; Region: COG4692" /db_xref="CDD:443727" gene complement(1337438..1337981) /locus_tag="STM1253" /db_xref="GeneID:1252771" CDS complement(1337438..1337968) /locus_tag="STM1253" /note="similar to E. coli putative cytochrome (AAC75040.1); Blastp hit to AAC75040.1 (186 aa), 67% identity in aa 11 - 183" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460220.1" /db_xref="GeneID:1252771" /translation="MAHFSRLQITLHWLTLLLTGIAYAAIELRGWAPKGSSVYLFMKD THYDMGVLVWALMFLRLYLKHKYPDPVITPPPPHWQHVAAKLMHIALYLTFLALPLLG VAMMASGGKSWSFFGFTVPVFLTPDSTLKSDIKRIHEMLANIGYFLIAMHAAAALFHH YIQKDDTFSRMLPGKS" misc_feature complement(1337441..1337908) /locus_tag="STM1253" /note="Cytochrome b561 [Energy production and conversion]; Region: CybB; COG3038" /db_xref="CDD:442272" regulatory complement(1337976..1337981) /regulatory_class="ribosome_binding_site" /locus_tag="STM1253" /note="putative RBS for STM1253; RegulonDB:STMS1H001506" gene complement(1338117..1338436) /locus_tag="STM1254" /db_xref="GeneID:1252772" CDS complement(1338117..1338431) /locus_tag="STM1254" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460221.1" /db_xref="GeneID:1252772" /translation="MTNKKHIFSIIFIGSLLTGCATGPSPTGIGLYTDVKGPITATSL PATKTGKACAQTVLGIVNTGDASIDSAKKAGDISLVSSVDYETTGSYPFYGKTCVVVR GQ" misc_feature complement(1338120..1338344) /locus_tag="STM1254" /note="TRL-like protein family; Region: TRL; pfam13146" /db_xref="CDD:432993" regulatory complement(1338431..1338436) /regulatory_class="ribosome_binding_site" /locus_tag="STM1254" /note="putative RBS for STM1254; RegulonDB:STMS1H001507" gene 1339105..1340747 /locus_tag="STM1255" /db_xref="GeneID:1252773" regulatory 1339105..1339110 /regulatory_class="ribosome_binding_site" /locus_tag="STM1255" /note="putative RBS for STM1255; RegulonDB:STMS1H001508" CDS 1339113..1340747 /locus_tag="STM1255" /note="putative substrate-binding protein (gi|2337942)" /codon_start=1 /transl_table=11 /product="putative ABC transporter periplasmic binding protein" /protein_id="NP_460222.1" /db_xref="GeneID:1252773" /translation="MLRREKQKQRIIWDKLMIKGKLALVTCALTLVFTSSLFAASDTA DGRTLKLAIGPEPTEGFDPMLGWSHGSYLLLHAPLLKQNADMSWGNLLTEKVDTSPDG KIWTLTLKPGLKFSDGSPLTAEDVVFTYNKAAKSGGKIDMGNFSHARALDARRIEMTL SHPQSTFVNVLGSLGIVPASRYDEKTFAREPIGAGPYRLVSFQPGQQLIVEANPWYAG KKNDFNRLVFVFLDEDNAYAAARSGQLGLVRIAPSMAVAPQQDNLKLWVRDSVENRGI VFPMVPAGKKDANDYPVGNDVTADVAIRRAINYAINRKQLAEQVMEGHAIPAYSAVQG LPWQNPSVIFSDGDIAKARAILEEAGWKINSAGVREKAGKEARLTLWYASGDSTRRDL AEAVRAMLQPLGIVVSLQSGSWETVERHMHANPTLFGWGSLDPMELFHHYSGKAAGVE YYNPGYYSNPAVEAHLKQAIDAPDWQKAIPFWQQVEWDGKQGAGVQGDAAWAWLLNIQ HTYLANPCIDLGKGAPEIHGSWSVLNNLDDWTWTCR" misc_feature 1339254..1340672 /locus_tag="STM1255" /note="The substrate-binding component of an uncharacterized ABC-type nickel/dipeptide/oligopeptide-like import system contains the type 2 periplasmic binding fold; Region: PBP2_NikA_DppA_OppA_like_19; cd08518" /db_xref="CDD:173883" gene 1340741..1341721 /locus_tag="STM1256" /db_xref="GeneID:1252774" regulatory 1340741..1340746 /regulatory_class="ribosome_binding_site" /locus_tag="STM1256" /note="putative RBS for STM1256; RegulonDB:STMS1H001509" CDS 1340747..1341721 /locus_tag="STM1256" /note="putative transmembrane protein (gi|2337943)" /codon_start=1 /transl_table=11 /product="putative ABC transporter" /protein_id="NP_460223.1" /db_xref="GeneID:1252774" /translation="MKLFFSHFLRLIILLVLVAAGTFILLSFSPVDPIRAYIGNDLLH VPPEQYARIAARWGLDQPLWERFGHWFWRLLQGDMGYSMLFNMPVASVIRERFATSFA LLAGAWLLSGVLGVTLGFLAGRFLHRWPDKMICRISYLLSSLPTFWIAMLLLALFAVR WPVLPVCCAWDPGNNAGTALLSERLRHLVLPVCALSLLGMGQIALHTREKIASVMKSE FIRFARAQGDKGWSLLRHQVLRHAITPALCLQFASLGELMGGALLAEKVFAYPGLGQA TIDAGLRGDVPLLMGIVLFCTLLVFAGNTISAWLVVVLNRSLERPDAL" misc_feature 1340810..1341691 /locus_tag="STM1256" /note="ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism]; Region: DppB; COG0601" /db_xref="CDD:440366" gene 1341704..1342523 /locus_tag="STM1257" /db_xref="GeneID:1252775" regulatory 1341704..1341709 /regulatory_class="ribosome_binding_site" /locus_tag="STM1257" /note="putative RBS for STM1257; RegulonDB:STMS1H001510" CDS 1341711..1342523 /locus_tag="STM1257" /note="putative transmembrane protein (gi|2337944)" /codon_start=1 /transl_table=11 /product="putative ABC transporter" /protein_id="NP_460224.1" /db_xref="GeneID:1252775" /translation="MLYNPAPTLFRLLLSVTCLLFIAGYGYATLSQPPEVNLLARHLS PDIQHWFGTDNLGRDVWLRCFQGAFTSLQIGVGAALCSGVIALVMAAVARIHPRLDLL VRLITDAMLAMPHLLLLILICFTLGGGKSGVIAAVALTHWPRLALILRADAERVAQSD YLTLTYRLGHGHLYCWRYHYFPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEP SLGLLLADALRFISHGNWWLVLFPGLMLFTLVMLFDQFARAIQRLWLRSDVC" misc_feature 1341807..1342502 /locus_tag="STM1257" /note="ABC-type dipeptide/oligopeptide/nickel transport system, permease component [Amino acid transport and metabolism, Inorganic ion transport and metabolism]; Region: DppC; COG1173" /db_xref="CDD:440786" gene 1342510..1343314 /locus_tag="STM1258" /db_xref="GeneID:1252776" regulatory 1342510..1342515 /regulatory_class="ribosome_binding_site" /locus_tag="STM1258" /note="putative RBS for STM1258; RegulonDB:STMS1H001511" CDS 1342517..1343314 /locus_tag="STM1258" /note="contains duplicated ATPase domain; putative ATPase (gi|2337945)" /codon_start=1 /transl_table=11 /product="putative ATPase component of ABC-type transport system" /protein_id="NP_460225.1" /db_xref="GeneID:1252776" /translation="MLSLQQVTLESARYRWYGARRWSPLLQNVSFDIAPGEMVALVGG SGEGKSLLLQCLLDLLPENLRFRGEITLDGNRLDRHTIRQLRGNTFSYVPQGVQALNP MLNIRKHLNRACHLTGRAWDETQMVQLLQQSDLEPTVLERFPRQLSGGMAKRILACHA SLSQARYILADEITAWLDTALANQLLEHLRGLCERGCGVLWVTHDLLLAARYADRIVA LHQGYITDNIRCEQLQPEEMSEPLKRQWQALPELNPLFMPTGEGIEC" misc_feature <1342517..1343278 /locus_tag="STM1258" /note="ABC-type glutathione transport system ATPase component, contains duplicated ATPase domain [Posttranslational modification, protein turnover, chaperones]; Region: GsiA; COG1123" /db_xref="CDD:440740" gene 1343301..1343898 /locus_tag="STM1259" /db_xref="GeneID:1252777" regulatory 1343301..1343306 /regulatory_class="ribosome_binding_site" /locus_tag="STM1259" /note="putative RBS for STM1259; RegulonDB:STMS1H001512" CDS 1343308..1343898 /locus_tag="STM1259" /note="contains duplicated ATPase domain; putative ATPase (gi|2337946)" /codon_start=1 /transl_table=11 /product="putative ATPase component of ABC-type transport system" /protein_id="NP_460226.1" /db_xref="GeneID:1252777" /translation="MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLG RVLAGWQKPTAGDVLLDGSPLPLHQYCPVQLVPQHPELTFNPWRSAGDAVRDAWQPDP ETMRRLHVQPEWLTRRPMQLSGGELARIAILRALDPRTRFLIADEMTAQLDPSIQKAI WVYVLEVCRSRSLGMLVISHQSALLDQVCTRHLQVE" misc_feature 1343308..1343880 /locus_tag="STM1259" /note="ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism, Inorganic ion transport and metabolism]; Region: DppF; COG1124" /db_xref="CDD:440741" gene complement(1343980..1345119) /locus_tag="STM1260" /db_xref="GeneID:1252778" CDS complement(1343980..1345113) /locus_tag="STM1260" /note="hypothetical protein (gi|2337947)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460227.1" /db_xref="GeneID:1252778" /translation="MEYLARLNIVAMLMSTTFWINLAVVFFVTLITYWLINWLLNVVY KALQRPDKKDDAHGRLRPIVFEMLKKTSKMLIFFAAFLFSLRFVALPDRLFSTLSHAW FLVVAIQMAIWLDQGVQSWMRHLLYAPGSNKNPVTLVILGMILRVLVWSMMLLSILAN VGVDITALVASLGVGGIAIALAVQTVLSDVFASLSIGFDKPFEIGDFVVFNDVAGTIE HIGLKTTRIRSLSGEQIVCANAQLLQQTIHNYKRMQTRRIVFTFGVATATPPEKLRLI GDMVKKIITDVGETQFDRAHLLAFGQDRLTYEVVHIVNTADYNKYMDIQQEINIRIIE KLIENDIELALPSLVVRAPVQVEETRDYSNTADAKNADKRVMQ" misc_feature complement(1344061..1344855) /locus_tag="STM1260" /note="Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]; Region: MscS; COG0668" /db_xref="CDD:440432" regulatory complement(1345114..1345119) /regulatory_class="ribosome_binding_site" /locus_tag="STM1260" /note="putative RBS for STM1260; RegulonDB:STMS1H001513" gene 1345300..1345633 /locus_tag="STM1261" /db_xref="GeneID:1252779" regulatory 1345300..1345305 /regulatory_class="ribosome_binding_site" /locus_tag="STM1261" /note="putative RBS for STM1261; RegulonDB:STMS1H001514" CDS 1345307..1345633 /locus_tag="STM1261" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460228.1" /db_xref="GeneID:1252779" /translation="MQQEHRECIEQCYECAAACDICASSCLREDNVEMMKHCIQLDMQ CAAICRLAAQFMALESEYSQKLCRLCADICKACAEECARHDHDHCQNCARACSQCADA CLKMAA" misc_feature 1345319..1345624 /locus_tag="STM1261" /note="Cysteine-rich 4 helical bundle widely conserved in bacteria; Region: DUF326; cd08026" /db_xref="CDD:153434" misc_feature order(1345424..1345429,1345433..1345438,1345445..1345450, 1345457..1345459,1345466..1345471,1345487..1345492, 1345499..1345501,1345511..1345513,1345520..1345525) /locus_tag="STM1261" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153434" gene 1345637..1345710 /locus_tag="STM1262" /db_xref="GeneID:1252780" tRNA 1345637..1345710 /locus_tag="STM1262" /product="tRNA-OTHER" /db_xref="GeneID:1252780" gene 1345815..1346477 /locus_tag="STM1263" /db_xref="GeneID:1252781" regulatory 1345815..1345820 /regulatory_class="ribosome_binding_site" /locus_tag="STM1263" /note="putative RBS for STM1263; RegulonDB:STMS1H001515" CDS 1345830..1346477 /locus_tag="STM1263" /note="similar to E. coli orf, hypothetical protein (AAC75039.1); Blastp hit to AAC75039.1 (216 aa), 71% identity in aa 3 - 216" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460229.3" /db_xref="GeneID:1252781" /translation="MIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVF DDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQKAKKDPEKTFEDIKAYYRKGYVT NVETIGIENGVIEFHRDNNVASCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPKY VQFSDHIIAPRKSAHFHIFMGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH" misc_feature 1345833..1346474 /locus_tag="STM1263" /note="zinc/cadmium-binding protein; Provisional; Region: PRK10306" /db_xref="CDD:182368" gene 1346579..1347374 /gene="aadA" /locus_tag="STM1264" /db_xref="GeneID:1252782" regulatory 1346579..1346584 /regulatory_class="ribosome_binding_site" /gene="aadA" /locus_tag="STM1264" /note="putative RBS for aadA; RegulonDB:STMS1H001516" CDS 1346586..1347374 /gene="aadA" /locus_tag="STM1264" /codon_start=1 /transl_table=11 /product="aminoglycoside adenyltransferase" /protein_id="NP_460230.1" /db_xref="GeneID:1252782" /translation="MTLSIPPSIQCQTEAACRLITRVTGDTLRAIHLYGSAVAGGLKP NSDIDLLVTICQPLTEAQRATLMQELLALSSPPGASAEKRALEVTVVLYSQLVPWCFP PSREMQFGEWLREDICQGIYEPAQQDWDMVLLITQILETSIPLKGERAERLFTPAPAA QLLKALRYPLDLWQSTADVQGDEYHIVLTLARIWYTLSTGRFTSKDAAADWLLPQLPE DYAATLRAAQREYLGLEQQDWHILLPAVVRFVDFAKAHIPTQFT" misc_feature 1346586..1347371 /gene="aadA" /locus_tag="STM1264" /note="aminoglycoside nucleotidyltransferase ANT(3'')/ANT(9); Region: ANT_3pp_9_crypt; NF012135" /db_xref="CDD:411084" gene 1347512..1348112 /locus_tag="STM1265" /db_xref="GeneID:1252783" regulatory 1347512..1347517 /regulatory_class="ribosome_binding_site" /locus_tag="STM1265" /note="putative RBS for STM1265; RegulonDB:STMS1H001517" CDS 1347519..1348112 /locus_tag="STM1265" /note="contains a CheY-like receiver domain and a HTH DNA-binding domain" /codon_start=1 /transl_table=11 /product="putative response regulators" /protein_id="NP_460231.1" /db_xref="GeneID:1252783" /translation="MTGSASSVLKTDTRLLSENLFLNYGLESLFKDVAIIAGNVNYII FDIDDYYTVQQYITSTFKTVLIGIVTHNEYNFIDEHHVIYRIKVDASIAEWRELLILA AAGQFFPRSEKVRLTANERNVLAMLVKGMDIRQISCELNVHLKTIYSVRYHVLTKLGC RTVLDYQILSVSKAFTHWLTINNVDNVISRVNSKVIA" misc_feature 1347855..1348013 /locus_tag="STM1265" /note="helix_turn_helix, Lux Regulon; Region: HTH_LUXR; smart00421" /db_xref="CDD:197715" gene 1348176..1349029 /locus_tag="STM1266" /db_xref="GeneID:1252784" regulatory 1348176..1348181 /regulatory_class="ribosome_binding_site" /locus_tag="STM1266" /note="putative RBS for STM1266; RegulonDB:STMS1H001518" CDS 1348181..1349029 /locus_tag="STM1266" /note="similar to E. coli putative transcriptional regulator (AAC74246.1); Blastp hit to AAC74246.1 (243 aa), 31% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_460232.1" /db_xref="GeneID:1252784" /translation="MATFSISAMAAQCGVTTANIRSWERYGLLQPTKDEAGNRFYCIE DAIRIQHIIDALSKGFSLKEIKPALYGEETHCRSGWLFYQEEILAQCRKFEPAKLRKL LWRYGREIPPCIVIESILRPLRLWLSAGDDDARRFEKALLDTAIIEYATFQLSSVRKA PAGTMLIAAFSLNDPIELWLETIKYCSEGMRVEVIPWQAPMPDLLSTSFEHIVLWHDE TLTPAQENLIQALKESGKFSLHVKNGSGLTLLPAVYRQHEMPESMQHVAPQIHANGYE KSGTAR" misc_feature 1348181..1348885 /locus_tag="STM1266" /note="HTH-type transcriptional regulator MlrA; Region: PRK15043" /db_xref="CDD:185003" gene complement(1349284..1349542) /locus_tag="STM1267" /db_xref="GeneID:1252785" CDS complement(1349284..1349532) /locus_tag="STM1267" /note="similar to E. coli orf, hypothetical protein (AAC74250.1); Blastp hit to AAC74250.1 (88 aa), 41% identity in aa 23 - 88" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460233.1" /db_xref="GeneID:1252785" /translation="MTTITLVNEQNSTGNPFSAHMLCEQRAIQEITYELLQSQQHVSN KDIIAKLIEKLETEKDVVQLDIYRNALEAVLFQTPDDI" misc_feature complement(1349290..1349466) /locus_tag="STM1267" /note="Biofilm development protein YmgB/AriR; Region: YmgB; pfam10798" /db_xref="CDD:431503" regulatory complement(1349537..1349542) /regulatory_class="ribosome_binding_site" /locus_tag="STM1267" /note="putative RBS for STM1267; RegulonDB:STMS1H001519" gene complement(1349611..1349764) /locus_tag="STM1268" /db_xref="GeneID:1252786" CDS complement(1349611..1349760) /locus_tag="STM1268" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460234.1" /db_xref="GeneID:1252786" /translation="MLIRLNWSEKKEQAVDSAESSFKVYKIYNKSHKCDAHHVFMIFY YSFMI" regulatory complement(1349759..1349764) /regulatory_class="ribosome_binding_site" /locus_tag="STM1268" /note="putative RBS for STM1268; RegulonDB:STMS1H001520" gene 1349836..1350388 /locus_tag="STM1269" /db_xref="GeneID:1252787" regulatory 1349836..1349841 /regulatory_class="ribosome_binding_site" /locus_tag="STM1269" /note="putative RBS for STM1269; RegulonDB:STMS1H001521" CDS 1349843..1350388 /locus_tag="STM1269" /codon_start=1 /transl_table=11 /product="putative chorismate mutase" /protein_id="NP_460235.1" /db_xref="GeneID:1252787" /translation="MIRHIAIFLCSLLMCSTTFADSVTSVSLGALLTALNERMLLMKD VAAYKMKHHLPIEDFTREQNVFAEAEEEAKNNGLDPHSITPFIRSLMDASKAIQYRYL AQWRTGSEPSFPIQTLSVTRQRIRQLDNQMLIIISQRLMVGAFSHDDMVWLRAQFNAP NLNESDISNVLAALSLVRRAR" misc_feature 1349846..1350385 /locus_tag="STM1269" /note="chorismate mutase; Provisional; Region: PRK08055" /db_xref="CDD:236143" gene 1350570..1351223 /gene="yeaS" /locus_tag="STM1270" /db_xref="GeneID:1252788" regulatory 1350570..1350575 /regulatory_class="ribosome_binding_site" /gene="yeaS" /locus_tag="STM1270" /note="putative RBS for yeaS; RegulonDB:STMS1H001522" CDS 1350585..1351223 /gene="yeaS" /locus_tag="STM1270" /note="similar to E. coli orf, hypothetical protein (AAC74868.1); Blastp hit to AAC74868.1 (212 aa), 86% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_460236.1" /db_xref="GeneID:1252788" /translation="MFAEYGVLNYWTYLVGAIFIVLVPGPNTLFVLKNSVGRGVKGGY LAACGVFIGDAILMFLAYAGVATLIKTTPVLFNIVRYLGAFYLLYLGAKILYATLTSK GRAATETVVPFGAIFKRALILSLTNPKAILFYVSFFVQFIDVTAPHTGVSFFILATTL EIVSFCYLSFLILSGAFVTHYIGTKKKLAKVGNSLIGLLFVGFAARLATLQS" misc_feature 1350585..1351220 /gene="yeaS" /locus_tag="STM1270" /note="leucine export protein LeuE; Provisional; Region: PRK10958" /db_xref="CDD:236807" gene 1351385..1351758 /gene="yeaR" /locus_tag="STM1271" /db_xref="GeneID:1252789" regulatory 1351385..1351390 /regulatory_class="ribosome_binding_site" /gene="yeaR" /locus_tag="STM1271" /note="putative RBS for yeaR; RegulonDB:STMS1H001523" CDS 1351396..1351758 /gene="yeaR" /locus_tag="STM1271" /note="similar to E. coli orf, hypothetical protein (AAC74867.1); Blastp hit to AAC74867.1 (119 aa), 83% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460237.1" /db_xref="GeneID:1252789" /translation="MRQIPQNHIHTRSTPFWNKETAPAGIFERHLDKGTRPDVYPRLS VMQGAVKYLGYADEHCSEPEEIMVINAGEFGVFPPEKWHNIEVMTDDTYFNIDFFVAP EVLMEGATSRKVIHAGRE" misc_feature 1351396..1351719 /gene="yeaR" /locus_tag="STM1271" /note="Tellurite resistance protein TehB, SAM-dependent methylase, cupin superfamily [Inorganic ion transport and metabolism]; Region: TehB; COG3615" /db_xref="CDD:442833" gene 1351745..1351943 /gene="yoaG" /locus_tag="STM1272" /db_xref="GeneID:1252790" regulatory 1351745..1351750 /regulatory_class="ribosome_binding_site" /gene="yoaG" /locus_tag="STM1272" /note="putative RBS for yoaG; RegulonDB:STMS1H001524" CDS 1351761..1351943 /gene="yoaG" /locus_tag="STM1272" /note="similar to E. coli orf, hypothetical protein (AAC74866.1); Blastp hit to AAC74866.1 (60 aa), 96% identity in aa 1 - 60" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460238.1" /db_xref="GeneID:1252790" /translation="MGKATYTVTVTNNSNGVSVDYETEAPMTLLVPEVAAEVVKDLVN TVRSYDTENEHDVCGW" misc_feature 1351773..1351940 /gene="yoaG" /locus_tag="STM1272" /note="Domain of unknown function (DUF1869); Region: DUF1869; pfam08956" /db_xref="CDD:430343" gene 1352168..1352814 /locus_tag="STM1273" /db_xref="GeneID:1252791" regulatory 1352168..1352173 /regulatory_class="ribosome_binding_site" /locus_tag="STM1273" /note="putative RBS for STM1273; RegulonDB:STMS1H001525" CDS 1352173..1352814 /locus_tag="STM1273" /codon_start=1 /transl_table=11 /product="putative nitric oxide reductase" /protein_id="NP_460239.1" /db_xref="GeneID:1252791" /translation="MKLDTRLTSSALTLALAAVVIPFTADWQLPLLNGVVVRWIENGQ ALWLLFGALFTAWYIRPLSRPEGAKQFWLWAVVWWVVLLGRSTSWGRDYFPDEPRMLF RTISVILIAALVLPVLFSAGLRKEIVRRLRDVPLPLWLFAVTTCSYLISDTVEHHRWL SPIFLHNARYTDLIEELYEVPFMIGLFMVTVGFMQQDKQDECTALEMTPYHAK" gene 1353120..1353377 /gene="yeaQ" /locus_tag="STM1274" /db_xref="GeneID:1252792" regulatory 1353120..1353125 /regulatory_class="ribosome_binding_site" /gene="yeaQ" /locus_tag="STM1274" /note="putative RBS for yeaQ; RegulonDB:STMS1H001526" CDS 1353129..1353377 /gene="yeaQ" /locus_tag="STM1274" /note="similar to E. coli orf, hypothetical protein (AAC74865.1); Blastp hit to AAC74865.1 (82 aa), 95% identity in aa 1 - 82" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460240.1" /db_xref="GeneID:1252792" /translation="MGILSWIIFGLIAGILAKWIMPGKDGGGFFMTIILGIVGAVVGG WISTFFGFGKVDGFNFGSFAVAVIGAIVVLLIYRKIKS" misc_feature 1353129..1353374 /gene="yeaQ" /locus_tag="STM1274" /note="hypothetical protein; Provisional; Region: PRK10457" /db_xref="CDD:182475" gene 1353799..1354061 /gene="yaoF" /locus_tag="STM1275" /db_xref="GeneID:1252793" regulatory 1353799..1353804 /regulatory_class="ribosome_binding_site" /gene="yaoF" /locus_tag="STM1275" /note="putative RBS for yaoF; RegulonDB:STMS1H001527" CDS 1353810..1354061 /gene="yaoF" /locus_tag="STM1275" /note="similar to E. coli orf, hypothetical protein (AAC74863.1); Blastp hit to AAC74863.1 (84 aa), 63% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="putative hemolysin" /protein_id="NP_460241.1" /db_xref="GeneID:1252793" /translation="MKFTWIALPGVLLLSACSSSQPNAPRPPRIGMPNPAAVYCEQQG GTLMPVQTPQGVRSDCKLPNGEIIDEWTLWRREHPDTKK" misc_feature 1353810..1354046 /gene="yaoF" /locus_tag="STM1275" /note="Putative hemolysin [General function prediction only]; Region: Hlx; COG3042" /db_xref="CDD:442276" gene 1354125..1354441 /locus_tag="STM1276" /db_xref="GeneID:1252794" regulatory 1354125..1354130 /regulatory_class="ribosome_binding_site" /locus_tag="STM1276" /note="putative RBS for STM1276; RegulonDB:STMS1H001528" CDS 1354130..1354441 /locus_tag="STM1276" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460242.1" /db_xref="GeneID:1252794" /translation="MFQLKPGALAIVIGAKTPAGRQNIGKSVELFCLCQPGDEFINPV NGHVTLLPKEAPRALWLVTGDVASADGQHGFAWVRAEHLMPLSPDRQPGQAAARQSQL S" gene complement(1354427..1354786) /gene="yeaO" /locus_tag="STM1277" /db_xref="GeneID:1252795" CDS complement(1354427..1354774) /gene="yeaO" /locus_tag="STM1277" /note="similar to E. coli orf, hypothetical protein (AAC74862.1); Blastp hit to AAC74862.1 (122 aa), 73% identity in aa 8 - 122" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460243.1" /db_xref="GeneID:1252795" /translation="MRIQCKRVYFPAEKDDGYRVLVDRLWPRGIKKAALVYDEWNKAI TPSTELRKAFHSELIDFNHFAQQYRAELAQQHQEGKRLADIARHQPLTLLYAAKDTRQ NHAIVLAEWLREL" misc_feature complement(1354430..1354774) /gene="yeaO" /locus_tag="STM1277" /note="Uncharacterized conserved protein YeaO, DUF488 family [Function unknown]; Region: YeaO; COG3189" /db_xref="CDD:442422" regulatory complement(1354781..1354786) /regulatory_class="ribosome_binding_site" /gene="yeaO" /locus_tag="STM1277" /note="putative RBS for yeaO; RegulonDB:STMS1H001529" gene complement(1354893..1356094) /gene="yeaN" /locus_tag="STM1278" /db_xref="GeneID:1252796" CDS complement(1354893..1356077) /gene="yeaN" /locus_tag="STM1278" /note="similar to E. coli putative amino acid/amine transport protein (AAC74861.1); Blastp hit to AAC74861.1 (393 aa), 81% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein (amino acid/amine transport)" /protein_id="NP_460244.1" /db_xref="GeneID:1252796" /translation="MTTALSPRGKQGALLIAGILMIATTLRVTFTGAAPLLETIRSDY GLSTAQTGLLTTLPLLAFALVSPLAAGIARRFGMERSLFAAMLLICAGIALRSLPSAA LLFAGTAIIGCGIALGNVLLPGLIKRDFSQHVARLTGAYSLTMGAAAALGSALVVPLA LHGFGWRGALLMLMLFPLLAFLIWLPQWRTTRSANLSSSRALHERGIWRSPLAWQVTL FLGLNSLIYYVIIGWLPTILISHGYSEAQAGSLHGLLQLATAAPGLAIPLILHRFNDQ RWIAALVSLLCAVGAAGLWFVPGQAIIWTLLFGFGSGATMILGLTFIGLRASSAHQAA ALSGMAQSVGYLLAACGPPVMGKLHDASGSWYLPLSGVTVLAIIMAIFGLYAGRDREI AS" misc_feature complement(1354914..1356032) /gene="yeaN" /locus_tag="STM1278" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature complement(order(1355034..1355036,1355043..1355048, 1355055..1355060,1355067..1355069,1355118..1355120, 1355130..1355132,1355142..1355147,1355289..1355291, 1355301..1355303,1355382..1355384,1355391..1355399, 1355406..1355411,1355418..1355420,1355631..1355633, 1355640..1355645,1355652..1355654,1355709..1355711, 1355718..1355726,1355730..1355735,1355880..1355882, 1355976..1355978,1355985..1355990,1355997..1356002)) /gene="yeaN" /locus_tag="STM1278" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:349949" regulatory complement(1356089..1356094) /regulatory_class="ribosome_binding_site" /gene="yeaN" /locus_tag="STM1278" /note="putative RBS for yeaN; RegulonDB:STMS1H001530" gene 1356166..1356972 /gene="yeaM" /locus_tag="STM1279" /db_xref="GeneID:1252797" regulatory 1356166..1356171 /regulatory_class="ribosome_binding_site" /gene="yeaM" /locus_tag="STM1279" /note="putative RBS for yeaM; RegulonDB:STMS1H001531" CDS 1356178..1356972 /gene="yeaM" /locus_tag="STM1279" /note="similar to E. coli putative ARAC-type regulatory protein (AAC74860.1); Blastp hit to AAC74860.1 (273 aa), 76% identity in aa 5 - 256" /codon_start=1 /transl_table=11 /product="putative regulator (AraC/XylS family)" /protein_id="NP_460245.1" /db_xref="GeneID:1252797" /translation="MIGLRLDGYDPDLHHDAAVAFCIRARDDELFSPRHQHRKGQLIL ALHGAITCEVENAMWMVPPQYAVWLPGSLPHSNHVTAGAELCFLFIEPAAVVMPERCC TLKISPLCRELILSLARRTDPERAQMPTQRLIQVLFDELPQQPQEQLQLPVSGHPKIR QMVETMAQEPARWNTLGQWASVFAMSERNLARLVVKETGLSFRRWRHQLQLILALQAL IAGRNVQQTAQMLGYDSTTAFITMFKKGLGQTPGQYLTGELLLPHN" misc_feature 1356271..1356513 /gene="yeaM" /locus_tag="STM1279" /note="AraC/XylS family transcriptional regulators similar to NimR, N-terminal cupin domain; Region: cupin_NimR-like_N; cd06124" /db_xref="CDD:380379" misc_feature 1356700..1356942 /gene="yeaM" /locus_tag="STM1279" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:197666" gene complement(1356952..1357398) /gene="yeaL" /locus_tag="STM1280" /db_xref="GeneID:1252798" CDS complement(1356952..1357398) /gene="yeaL" /locus_tag="STM1280" /note="similar to E. coli orf, hypothetical protein (AAC74859.1); Blastp hit to AAC74859.1 (148 aa), 94% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460246.2" /db_xref="GeneID:1252798" /translation="MFDVTLLILLGLAALGFISHNTTVAVSILVLIIVRVTPLNTFFP WIEKQGLTVGIIILTIGVMAPIASGTLPPSTLIHSFVNWKSLVAIAVGVFVSWLGGRG ITLMGNQPQLVAGLLVGTVLGVALFRGVPVGPLIAAGLVSLIVGKQ" misc_feature complement(1356958..1357350) /gene="yeaL" /locus_tag="STM1280" /note="Uncharacterized membrane protein, DUF441 family [Function unknown]; Region: YeaL; COG2707" /db_xref="CDD:442026" regulatory complement(1357405..1357410) /regulatory_class="ribosome_binding_site" /note="putative RBS for yeaL; RegulonDB:STMS1H001532" gene 1357592..1357711 /locus_tag="STM1281" /db_xref="GeneID:1252799" regulatory 1357592..1357597 /regulatory_class="ribosome_binding_site" /locus_tag="STM1281" /note="putative RBS for STM1281; RegulonDB:STMS1H001533" CDS 1357604..1357711 /locus_tag="STM1281" /note="similar to E. coli orf, hypothetical protein (AAC74858.1); Blastp hit to AAC74858.1 (50 aa), 55% identity in aa 17 - 50" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460247.1" /db_xref="GeneID:1252799" /translation="MYDPPFLEALMITASFFAIFIIIVVSVLLLEGGGD" misc_feature 1357604..1357705 /locus_tag="STM1281" /note="small membrane protein YoaI; Region: membrane_YoaI; NF041475" /db_xref="CDD:469363" gene complement(1357708..1358240) /gene="yeaK" /locus_tag="STM1282" /db_xref="GeneID:1252800" CDS complement(1357708..1358226) /gene="yeaK" /locus_tag="STM1282" /note="similar to E. coli orf, hypothetical protein (AAC74857.1); Blastp hit to AAC74857.1 (167 aa), 87% identity in aa 1 - 165" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460248.1" /db_xref="GeneID:1252800" /translation="MTEVAKGVATHQRLVALLTQENARYRVVNHEAVGKCEAVSEIRG TALGQGAKALVCKVKGNGVNQHVLAILAADQQADLSQLASHLGGLRASLASPAEVDML TGCVFGAIPPFSFHPNLKLVADPLLFERFDEIAFNAGLLEKSVIMNTQDYLRIARPEL AVFRRFQSSPTA" misc_feature complement(1357735..1358196) /gene="yeaK" /locus_tag="STM1282" /note="YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting...; Region: YeaK; cd04336" /db_xref="CDD:239828" misc_feature complement(order(1357816..1357818,1357900..1357905, 1358071..1358073)) /gene="yeaK" /locus_tag="STM1282" /note="putative deacylase active site [active]" /db_xref="CDD:239828" regulatory complement(1358235..1358240) /regulatory_class="ribosome_binding_site" /gene="yeaK" /locus_tag="STM1282" /note="putative RBS for yeaK; RegulonDB:STMS1H001534" gene complement(1358276..1359786) /gene="yeaJ" /locus_tag="STM1283" /db_xref="GeneID:1252801" CDS complement(1358276..1359769) /gene="yeaJ" /locus_tag="STM1283" /note="Diguanylate cyclase/phosphodiesterase domain 1; similar to E. coli orf, hypothetical protein (AAC74856.1); Blastp hit to AAC74856.1 (556 aa), 68% identity in aa 61 - 556" /codon_start=1 /transl_table=11 /product="putative methyl-accepting chemotaxis protein" /protein_id="NP_460249.1" /db_xref="GeneID:1252801" /translation="MNLHHKALRHFISASVIVLTSSFLIYELIASDRAMNAYMRYIME RADSSFLYDKYQNQSIAAHLMRTFEAPGDPVTAEKHRAFCDAFEAINGTHGVNLTRHN YPALHGTLQTAATQCTDNLDDALLLPAFDQAVSINRSQDDHSHGLGTLELKFRYYVDL NKHYVYFYDLINSRRFAMHRWTFLQKGTMGINRKDIDKLFTGRTVISSIYMDDITQEN VMSFLTPVYLAGSLKGIVMVDVNQDNLKNIFYTQDRPLVWRYLNVTLKDMDSGKEIII NQSKNNLFQYVNYSHDIPGGLRVSLSLDLTYFLVSSWKALAFYLLATALLLNMVRMHF RLYRNVTRENISDAMTGLYNRKILTPVLEQRLQRLVNTGTPVTFVAIDCDRLKLINDT QGHQEGDRIITLLAKAIKTSIRKSDYAIRLGGDEFCIILVDYAADLAIHLPERIIRNL QIIAPDKTVHFSAGIYNMQPNDTINDAYQASDAQLYLNKQQKQHRSS" misc_feature complement(1358291..1359760) /gene="yeaJ" /locus_tag="STM1283" /note="diguanylate cyclase DgcJ; Region: diguan_DgcJ; NF040885" /db_xref="CDD:468821" regulatory complement(1359781..1359786) /regulatory_class="ribosome_binding_site" /gene="yeaJ" /locus_tag="STM1283" /note="putative RBS for yeaJ; RegulonDB:STMS1H001535" gene complement(1360410..1361707) /gene="yeaH" /locus_tag="STM1284" /db_xref="GeneID:1252802" CDS complement(1360410..1361696) /gene="yeaH" /locus_tag="STM1284" /note="similar to E. coli orf, hypothetical protein (AAC74854.1); Blastp hit to AAC74854.1 (427 aa), 94% identity in aa 1 - 423" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460250.1" /db_xref="GeneID:1252802" /translation="MTWFIDRRLNGKNKSTVNRQRFLRRYKAQIKQSISEAINKRSVT DVDSGESVSIPTDDISEPMFHQGRGGLRHRVHPGNDHFIQNDRIERPQGGGGGGSGSG QGQASQDGEGQDEFVFQISKDEYLDLLFEDLALPNLKKNQHRQLNEYKTHRAGFTSNG VPANISVVRSLQNSLARRTAMTAGKRRELHALETELETISHSEPAQLLEEERLRREIA ELRAKIERVPFIDTFDLRYKNYEKRPEPSSQAVMFCLMDVSGSMDQATKDMAKRFYIL LYLFLSRTYKNVEVVYIRHHTQAKEVDEHEFFYSQETGGTIVSSALKLMDEVVKERYD PGQWNIYAAQASDGDNWADDSPLCHEILAKKLLPVVRYYSYIEITRRAHQTLWREYEH LQATFDNFAMQHIRDQEDIYPVFRELFQKQSANQSA" misc_feature complement(1360431..1361660) /gene="yeaH" /locus_tag="STM1284" /note="Protein of unknown function (DUF444); Region: DUF444; pfam04285" /db_xref="CDD:427839" misc_feature complement(order(1360656..1360658,1360737..1360739, 1360926..1360928)) /gene="yeaH" /locus_tag="STM1284" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:238742" regulatory complement(1361702..1361707) /regulatory_class="ribosome_binding_site" /gene="yeaH" /locus_tag="STM1284" /note="putative RBS for yeaH; RegulonDB:STMS1H001536" gene complement(1361819..1363767) /gene="yeaG" /locus_tag="STM1285" /db_xref="GeneID:1252803" CDS complement(1361819..1363753) /gene="yeaG" /locus_tag="STM1285" /note="similar to E. coli orf, hypothetical protein (AAC74853.1); Blastp hit to AAC74853.1 (644 aa), 98% identity in aa 1 - 644" /codon_start=1 /transl_table=11 /product="putative Ser protein kinase" /protein_id="NP_460251.1" /db_xref="GeneID:1252803" /translation="MNIFDHYRQRYEAAKDEEFTLQDFLTICRQDRSAYANAAERLLM AIGEPNMVDTAQEPRLSRLFSNRVIARYPAFEEFYGMEDAIEQIVSYLKHAAQGLEEK KQILYLLGPVGGGKSSLAERLKSLMQRVPIYVLSANGERSPVNDHPLCLFNPQEDAQI LEKEYGIPRRYLGTIMSPWAAKRLHEFGGDITKFRVVKVWPSILEQIAIAKTEPGDEN NQDISALVGKVDIRKLEHHAQNDPDAYGYSGALCRANQGIMEFVEMFKAPIKVLHPLL TATQEGNYNGTEGISALPFNGIILAHSNESEWVTFRNNKNNEAFLDRVYIVKVPYCLR ISEEIKIYEKLLNHSELAHAPCAPGTLETLSRFSILSRLKEPENSSIYSKMRVYDGES LKDTDPKAKSYQEYRDYAGVDEGMNGLSTRFAFKILSRVFNFDHAEVAANPVHLFYVL EQQIEREQFPQEQAERYLEFLKGYLIPKYAEFIGKEIQTAYLESYSEYGQNIFDRYVT YADFWIQDQEYRDPDTGQLFDRESLNAELEKIEKPAGISNPKDFRNEIVNFVLRARAN NSGRNPNWTSYEKLRTVIEKKMFSNTEELLPVISFNAKTSTDEQKKHDDFVDRMMEKG YTRKQVRLLCEWYLRVRKSS" misc_feature complement(1361822..1363753) /gene="yeaG" /locus_tag="STM1285" /note="PrkA family serine protein kinase; Provisional; Region: PRK15455" /db_xref="CDD:185352" regulatory complement(1363762..1363767) /regulatory_class="ribosome_binding_site" /gene="yeaG" /locus_tag="STM1285" /note="putative RBS for yeaG; RegulonDB:STMS1H001537" gene 1364165..1364926 /gene="mipA" /locus_tag="STM1286" /db_xref="GeneID:1252804" regulatory 1364165..1364170 /regulatory_class="ribosome_binding_site" /gene="mipA" /locus_tag="STM1286" /note="putative RBS for mipA; RegulonDB:STMS1H001538" CDS 1364180..1364926 /gene="mipA" /locus_tag="STM1286" /note="similar to E. coli orf, hypothetical protein (AAC74852.1); Blastp hit to AAC74852.1 (248 aa), 83% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="scaffolding protein for murein-synthesizing holoenzyme" /protein_id="NP_460252.1" /db_xref="GeneID:1252804" /translation="MTKLKLLALGVFIATSASVAHAESNLTLGAGVGVVEHPYKDYDS DVYPIPVIAYESENFWFRGLGGGYYLWNDNADKLSIMAYWSPMYFKPGDSDDHQLRRL DRRKSTMMAGVSYAHHTQYGFLRTSLAGDTLDNSNGIVWDLAWLYRYTNGGLTLTPGI GVEWNSENQNDYYYGVSRKESSRSGLRGYNPNDSWNPYLELSANYNFAGNWSVYGTAR YTRLSDEITDSPMVDKSWTGILSTGVTYRF" misc_feature 1364180..1364923 /gene="mipA" /locus_tag="STM1286" /note="Outer membrane scaffolding protein for murein synthesis, MipA/OmpV family [Cell wall/membrane/envelope biogenesis]; Region: OmpV; COG3713" /db_xref="CDD:442927" gene 1365216..1366412 /locus_tag="STM1287" /db_xref="GeneID:1252805" CDS 1365216..1366412 /locus_tag="STM1287" /note="similar to E. coli putative arylsulfatase regulator (AAC76803.1); Blastp hit to AAC76803.1 (411 aa), 46% identity in aa 10 - 401" /codon_start=1 /transl_table=11 /product="arylsulfatase regulator" /protein_id="NP_460253.1" /db_xref="GeneID:1252805" /translation="MSIVFNTVAKPSGSLCNLSCKYCFYLDKPRGQRVMSDDVLETYI RRVIDDTPSSEVSFCWQGGEPTLCGLSFYQKVVRLQQRYANGKTIYNSLQTNGVLINE EWAAFFAQHQFLIGISIDGPQVVHDNYRKTPSGRASFSRVVNAIRLLQANDVEFNTLT VVNDASCCHGNAIYHFLTQELESKHLQFIPIVEPLAQKAQRSLTLSDNEDSPSLMPFS VTPEGWGAFMCDVFDQWIRHDVGRIFVQLFDNLLGVWMGEPATLCTMQSTCGQSLLVE QNGDVFSCDHFVFPAYKLGNLQQHSLEEMAASPFQQQFGAAKANLSSRCQNCTWRFAC HGGCPKHRICMDGGERQNYLCKGYLEFFQHVTPYMNVMRQLLLNQRPAAHITRIVDMI ADDVRQ" misc_feature 1365240..1366340 /locus_tag="STM1287" /note="anaerobic sulfatase-maturating enzyme; Region: sulfatase_rSAM; TIGR03942" /db_xref="CDD:188457" gene 1366503..1367366 /locus_tag="STM1288" /db_xref="GeneID:1252806" regulatory 1366503..1366508 /regulatory_class="ribosome_binding_site" /locus_tag="STM1288" /note="putative RBS for STM1288; RegulonDB:STMS1H001539" CDS 1366509..1367366 /locus_tag="STM1288" /note="similar to E. coli putative an aldehyde reductase (AAC74851.1); Blastp hit to AAC74851.1 (284 aa), 78% identity in aa 4 - 284" /codon_start=1 /transl_table=11 /product="putative aldehyde reductase" /protein_id="NP_460254.1" /db_xref="GeneID:1252806" /translation="MKSVKNVTFCGQVTLPAIGQGTWYMGERADQRQREVSALRAGLD LGLRLIDTAEMYADGGAEKVVGEALAGRRDEAFLVSKVYPWNAGGQKIVAACEESLRR LKTDYLDLYLLHWAGSFSFEETVEGMERLIAQGKIRRWGVSNLDYDDMQALWRIPGGQ QCATNQVLYHLASRGIEYDLLPWCQQQRMPVMAYSPLAQAGRLRSGLLNHPVVNEIAQ AHNATAAQILLTWVIAHPGVMAIPKAGSTEHVKQNAAALEIALSANELALLDNAWPAP KGKTALDMV" misc_feature 1366521..1367318 /locus_tag="STM1288" /note="Escherichia coli YeaE and similar proteins; Region: AKR_YeaE; cd19138" /db_xref="CDD:381364" misc_feature order(1366569..1366577,1366659..1366661,1366674..1366676, 1366749..1366751,1366848..1366850,1366935..1366940, 1367004..1367006,1367088..1367108,1367181..1367183, 1367229..1367246,1367253..1367255,1367262..1367267) /locus_tag="STM1288" /note="active site" /db_xref="CDD:381364" misc_feature order(1366659..1366661,1366674..1366676,1366749..1366751, 1366848..1366850) /locus_tag="STM1288" /note="catalytic tetrad [active]" /db_xref="CDD:381364" gene complement(1367465..1368361) /gene="yeaD" /locus_tag="STM1289" /db_xref="GeneID:1252807" CDS complement(1367465..1368349) /gene="yeaD" /locus_tag="STM1289" /note="similar to E. coli orf, hypothetical protein (AAC74850.1); Blastp hit to AAC74850.1 (301 aa), 82% identity in aa 8 - 301" /codon_start=1 /transl_table=11 /product="putative enzyme related to aldose 1-epimerase" /protein_id="NP_460255.1" /db_xref="GeneID:1252807" /translation="MINKIFALPVIEQLTPVLSRRQLDDLDLIVVDHPQVKASFALQG AHLLSWKPVGEEEVLWLSNNTPFKTGVALRGGVPICWPWFGPAAQQGLPSHGFARNLP WALKAHNEDDNGVMLTFELQSSEATRKYWPHDFTLLARFKVGKTCEIELEAHGEFATT SALHSYFNVGDIANVKVSGLGDRFIDKVNDAKEGVLTDGIQTFPDRTDRVYLNPEACS VIHDATLNRTIDVVHHHHLNVVGWNPGPALSVSMGDMPDDGYKTFVCVETVYATAPQQ ATEEKPSRLAQTICVAKR" misc_feature complement(1367471..1368349) /gene="yeaD" /locus_tag="STM1289" /note="D-hexose-6-phosphate mutarotase [Carbohydrate transport and metabolism]; Region: YeaD; COG0676" /db_xref="CDD:440440" regulatory complement(1368356..1368361) /regulatory_class="ribosome_binding_site" /gene="yeaD" /locus_tag="STM1289" /note="putative RBS for yeaD; RegulonDB:STMS1H001540" gene complement(1368684..1369691) /gene="gapA" /locus_tag="STM1290" /db_xref="GeneID:1252808" CDS complement(1368684..1369679) /gene="gapA" /locus_tag="STM1290" /EC_number="1.2.1.12" /note="glyceraldehyde 3-phosphate dehydrogenase. (SW:G3P1_SALTY)" /codon_start=1 /transl_table=11 /product="glyceraldehyde-3-phosphate dehydrogenase A" /protein_id="NP_460256.1" /db_xref="GeneID:1252808" /translation="MTIKVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDAEYMAYM LKYDSTHGRFDGTVEVKDGHLIVNGKKIRVTAERDPANLKWDEVGVDVVAEATGIFLT DETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYEGQDIVSNASCTTNCLAPLAK VINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGASQNIIPSSTGAAKAVGKV LPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAATYEQIKAAVKAAAEGEMKGVLGYTE DDVVSTDFNGEVCTSVFDAKAGIALNDNFVKLVSWYDNETGYSNKVLDLIAHISK" misc_feature complement(1368687..1369679) /gene="gapA" /locus_tag="STM1290" /note="glyceraldehyde-3-phosphate dehydrogenase; Region: gapA; PRK15425" /db_xref="CDD:185323" regulatory complement(1369686..1369691) /regulatory_class="ribosome_binding_site" /gene="gapA" /locus_tag="STM1290" /note="putative RBS for gapA; RegulonDB:STMS1H001541" gene 1369983..1370434 /gene="yeaA" /locus_tag="STM1291" /db_xref="GeneID:1252809" regulatory 1369983..1369988 /regulatory_class="ribosome_binding_site" /gene="yeaA" /locus_tag="STM1291" /note="putative RBS for yeaA; RegulonDB:STMS1H001542" CDS 1369991..1370434 /gene="yeaA" /locus_tag="STM1291" /note="putative domain frequently associated with peptide methionine sulfoxide reductase; similar to E. coli orf, hypothetical protein (AAC74848.1); Blastp hit to AAC74848.1 (137 aa), 85% identity in aa 1 - 137" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460257.1" /db_xref="GeneID:1252809" /translation="MSTFKVRCEQMANQPSAEELKKKLSEMQFYVTQDRGTEPPFTGR LLHNKRDGVYHCLVCDTPLFHSHTKYDSGCGWPSFYQPVSEEAIRYIDDFSHGMQRVE IRCGNCDAHLGHVFPDGPQPTGERYCVNSASLAFSDEKNGDQLKG" misc_feature 1370030..1370398 /gene="yeaA" /locus_tag="STM1291" /note="Peptide methionine sulfoxide reductase MsrB [Posttranslational modification, protein turnover, chaperones]; Region: MsrB; COG0229" /db_xref="CDD:439999" gene 1370460..1370754 /gene="yeaC" /locus_tag="STM1292" /db_xref="GeneID:1252810" regulatory 1370460..1370465 /regulatory_class="ribosome_binding_site" /gene="yeaC" /locus_tag="STM1292" /note="putative RBS for yeaC; RegulonDB:STMS1H001543" CDS 1370476..1370754 /gene="yeaC" /locus_tag="STM1292" /note="similar to E. coli orf, hypothetical protein (AAC74847.1); Blastp hit to AAC74847.1 (105 aa), 87% identity in aa 16 - 105" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460258.1" /db_xref="GeneID:1252810" /translation="MNLDEIINSMTPEVYQRLSTAVELGKWPDGVALTPEQKENSLQL VMLWQARHNTEAQHMTIDTHGQMVMKSKQQLKADFGITSKPIATLKMQ" misc_feature 1370476..1370745 /gene="yeaC" /locus_tag="STM1292" /note="Uncharacterized conserved protein YeaC, DUF1315 family [Function unknown]; Region: yeaC; COG3139" /db_xref="CDD:442373" gene complement(1371106..1371774) /gene="pncA" /locus_tag="STM1293" /db_xref="GeneID:1252811" CDS complement(1371106..1371762) /gene="pncA" /locus_tag="STM1293" /EC_number="3.5.1.-" /EC_number="3.5.1.19" /note="similar to E. coli orf, hypothetical protein (AAC74838.1); Blastp hit to AAC74838.1 (219 aa), 80% identity in aa 7 - 219" /codon_start=1 /transl_table=11 /product="nicotinamidase/ pyrazinamidase" /protein_id="NP_460259.1" /db_xref="GeneID:1252811" /translation="MTNRALLLVDLQNDFCAGGALAVAEGDSTIDIANALIDWCQPRQ IPVLASQDWHPAQHGSFASQHQAEPYSQGKLDGLPQTLWPDHCVQHTDGAALHPLLNQ HAIDACIYKGENPLIDSYSAFFDNEHRQKTTLDTWLREHDVTELIVMGLATDYCVKFT VLDALELGYAVNVITDGCRGVNIHPQDSAHAFMEMASAGATLYTLADWEETQGQAVAR " misc_feature complement(1371124..1371759) /gene="pncA" /locus_tag="STM1293" /note="bifunctional nicotinamidase/pyrazinamidase; Region: PRK11609" /db_xref="CDD:183228" misc_feature complement(order(1371295..1371297,1371430..1371432, 1371733..1371735)) /gene="pncA" /locus_tag="STM1293" /note="catalytic triad [active]" /db_xref="CDD:238493" misc_feature complement(order(1371505..1371507,1371601..1371603, 1371607..1371609)) /gene="pncA" /locus_tag="STM1293" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238493" misc_feature complement(1371307..1371312) /gene="pncA" /locus_tag="STM1293" /note="conserved cis-peptide bond [active]" /db_xref="CDD:238493" regulatory complement(1371769..1371774) /regulatory_class="ribosome_binding_site" /gene="pncA" /locus_tag="STM1293" /note="putative RBS for pncA; RegulonDB:STMS1H001544" gene complement(1371789..1372822) /gene="ansA" /locus_tag="STM1294" /db_xref="GeneID:1252812" CDS complement(1371789..1372805) /gene="ansA" /locus_tag="STM1294" /EC_number="3.5.1.1" /note="similar to E. coli cytoplasmic L-asparaginase I (AAC74837.1); Blastp hit to AAC74837.1 (338 aa), 94% identity in aa 1 - 338" /codon_start=1 /transl_table=11 /product="cytoplasmic L-asparaginase I" /protein_id="NP_460260.1" /db_xref="GeneID:1252812" /translation="MQKKSIYVAYTGGTIGMQRSDKGYIPVSGHLQRQLALMPEFHRP EMPDFTIHEYAPLMDSSDMTPEDWQHIAADIKAHYDEYDGFVILHGTDTMAFTASALS FMLENLGKPVIVTGSQIPLAELRSDGQINLLNALYVAANYPINEVTLFFNNRLFRGNR TTKAHADGFDAFASPNLPPLLEAGIHIRRLNTPPAPYGSGELIVHPITPQPIGVVTIY PGISAEVVRNFLRQPVKALILRSYGVGNAPQNKAFLQELKEASSRGIVVVNLTQCMSG RVNMGGYATGNALAHAGVIGGADMTVEATLTKLHYLLSQGLDTQAIRSAMAQNLRGEL TPDD" misc_feature complement(1371801..1372805) /gene="ansA" /locus_tag="STM1294" /note="cytoplasmic asparaginase I; Provisional; Region: ansA; PRK09461" /db_xref="CDD:181876" misc_feature complement(order(1372317..1372319,1372455..1372457, 1372530..1372538,1372623..1372628,1372764..1372769)) /gene="ansA" /locus_tag="STM1294" /note="active site" /db_xref="CDD:199207" misc_feature complement(order(1371876..1371878,1371888..1371890, 1371900..1371902,1371957..1371959,1371969..1371983, 1371990..1371992,1372062..1372064,1372074..1372082, 1372086..1372088,1372113..1372118,1372125..1372127, 1372134..1372139,1372143..1372172,1372176..1372178, 1372302..1372319,1372449..1372454,1372518..1372520, 1372527..1372532,1372602..1372607,1372611..1372631, 1372638..1372640,1372731..1372739,1372764..1372766)) /gene="ansA" /locus_tag="STM1294" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:199207" regulatory complement(1372817..1372822) /regulatory_class="ribosome_binding_site" /gene="ansA" /locus_tag="STM1294" /note="putative RBS for ansA; RegulonDB:STMS1H001545" gene complement(1372901..1374769) /gene="sppA" /locus_tag="STM1295" /db_xref="GeneID:1252813" CDS complement(1372901..1374757) /gene="sppA" /locus_tag="STM1295" /EC_number="3.4.21.-" /note="signal peptide peptidase; similar to E. coli protease IV, a signal peptide peptidase (AAC74836.1); Blastp hit to AAC74836.1 (618 aa), 86% identity in aa 1 - 618" /codon_start=1 /transl_table=11 /product="protease IV" /protein_id="NP_460261.1" /db_xref="GeneID:1252813" /translation="MRTLWRFIAGFFKWTWRVLNFVREMVLNLFFIFLVLVGVGIWMQ IGNGSNSEQTARGALLLDISGVIVDKPSTNHRLGALGRQLFGASSDRLQENSLFDIVN AIRQAKDDRNITGIVLDLKNFTGADQPSMRYIGKALREFRDSGKPVFAVGENYSQGQY YLASFANKIWLSPQGQVDLHGFATNGLYYKTLLDKLKVSTHVFRVGTYKSAVEPFIRD DMSPAAREADSRWIGELWQNYLHTVSANRQISPQQLFPGAQAIIDGLTSVGGDTAKYA LDHKLVDALASSADVEKALTKQFGWSKTENNYRAISYYDYSLKTPADTGGTIAVIFAN GAIMDGEETPGNVGGDTTASQIRDARLDPKVKAIVLRVNSPGGSVNASEVIRAELAAA RAAGKPVVVSMGGMAASGGYWISTPANYIVASPSTLTGSIGIFGVINTVENSLSSIGV HSDGVSTSPLADISMTKALSPEVQQMMQLSIEYGYKRFITLVADARKRTPEQIDKIAQ GHVWTGEDAKANGLVDSLGDFDDAVAKAAELAKLKQWHLDYYQDEPTVLDMVMDSMTG SVRAMLPETIQAMLPAPLVSAANTVKAEGDKLAAFNDPQNRYAFCLTCANVR" misc_feature complement(1372904..1374757) /gene="sppA" /locus_tag="STM1295" /note="signal peptide peptidase SppA; Region: PRK10949" /db_xref="CDD:182860" regulatory complement(1374764..1374769) /regulatory_class="ribosome_binding_site" /gene="sppA" /locus_tag="STM1295" /note="putative RBS for sppA; RegulonDB:STMS1H001546" gene 1374917..1375482 /gene="ydjA" /locus_tag="STM1296" /db_xref="GeneID:1252814" regulatory 1374917..1374922 /regulatory_class="ribosome_binding_site" /gene="ydjA" /locus_tag="STM1296" /note="putative RBS for ydjA; RegulonDB:STMS1H001547" CDS 1374931..1375482 /gene="ydjA" /locus_tag="STM1296" /note="similar to E. coli orf, hypothetical protein (AAC74835.1); Blastp hit to AAC74835.1 (183 aa), 88% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_460262.1" /db_xref="GeneID:1252814" /translation="MDALELLVNRRSASRLAEPAPVGEQLQNILRAGMRVPDHKSLQP WRFFVIEGEGRDRFSAVLEQGAVAAGGDEKAIEKARNAPFRAPLIITVVAKCEENHKV PVWEQEMSAGCAVMAMQMAAIAQGFNGIWRSGALTESAIVREAFECRPQDKIVGFLYL GTPQLKASTTISTPDPTPFVRYF" misc_feature 1374931..1375479 /gene="ydjA" /locus_tag="STM1296" /note="putative oxidoreductase; Provisional; Region: PRK10828" /db_xref="CDD:182761" misc_feature order(1374940..1374942,1374946..1374954,1374958..1374960, 1375009..1375014,1375018..1375026,1375030..1375041, 1375045..1375047,1375057..1375059,1375063..1375080, 1375243..1375248,1375252..1375257,1375264..1375269, 1375276..1375281,1375288..1375293,1375300..1375305, 1375321..1375323,1375327..1375329,1375363..1375368, 1375387..1375389,1375393..1375395) /gene="ydjA" /locus_tag="STM1296" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:380312" misc_feature order(1374958..1374966,1375033..1375035,1375039..1375047, 1375246..1375248,1375255..1375260,1375318..1375332) /gene="ydjA" /locus_tag="STM1296" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:380312" gene 1375588..1376643 /gene="selD" /locus_tag="STM1297" /db_xref="GeneID:1252815" regulatory 1375588..1375593 /regulatory_class="ribosome_binding_site" /gene="selD" /locus_tag="STM1297" /note="putative RBS for selD; RegulonDB:STMS1H001548" CDS 1375600..1376643 /gene="selD" /locus_tag="STM1297" /EC_number="2.7.9.3" /note="similar to E. coli selenophosphate synthase, H(2)Se added to acrylyl-tRNA (AAC74834.1); Blastp hit to AAC74834.1 (347 aa), 92% identity in aa 1 - 347" /codon_start=1 /transl_table=11 /product="selenophosphate synthase" /protein_id="NP_460263.1" /db_xref="GeneID:1252815" /translation="MSEQAIRLTQYSHGAGCGCKISPKVLETILHSEQAKFVDPNLLV GNETRDDAAVYDLGNGTSIISTTDFFMPIVDNPFDFGRIAATNAISDIFAMGGKPIMA IAILGWPINTLSPDIAREVTEGGRFACRQAGIALAGGHSIDAPEPIFGLAVTGVVPTE RVKKNSTAQAGCKLFLTKPLGIGVLTTAEKKSLLKPEHQGLATEVMCRMNVAGAAFAN IDGVKAMTDVTGFGLLGHLSEMCQGAGVQALLCYQDIPKLPGVEEYIALGAVPGGTER NFASYGHLMGDMSREVRSLLCDPQTSGGLLLAVTPDAEDDVKATAAEFGIDLTAIGEL VEARGGRAMVEIR" misc_feature 1375600..1376640 /gene="selD" /locus_tag="STM1297" /note="selenide, water dikinase SelD; Region: PRK00943" /db_xref="CDD:234870" gene 1376648..1378597 /gene="topB" /locus_tag="STM1298" /db_xref="GeneID:1252816" CDS 1376648..1378597 /gene="topB" /locus_tag="STM1298" /EC_number="5.6.2.1" /note="DNA topoisomerase III (SW:TOP3_SALTY)" /codon_start=1 /transl_table=11 /product="DNA topoisomerase III" /protein_id="NP_460264.1" /db_xref="GeneID:1252816" /translation="MRLFIAEKPSLGRAIADVLPKPHRKGDGFIECGNGQVVTWCIGH LLEQAQPDAYDSRYARWNLADLPIVPEKWQLQPRPSVTKQLNVIKRFLHQAGEIIHAG DPDREGQLLVDEVLDYLQLPAEKRQQVRRCLINDLNPQAVERAIDRLRANSDFVPLCV SALARARADWLYGINMTRAYTILGRNAGYQGVLSVGRVQTPVLGLVVRRDEEIENFVA KDFFEVKAHIVTPADERFTAIWQPSEACEPYQDEEGRLLHRPLAEHVVNRINGQPALV TSYNDKRESESAPLPFSLSTLQIEAAKRFGLSAQNVLDICQKLYETHKLITYPRSDCR YLPEEHFAGRQAVMNAISVHAPDLLPQPVVNPDTRNRCWDDKKVDAHHAIIPTARSSS VHLTENEAKVYTLIARQYLMQFCPDAVFRKCVIELEIAKGKFVAKARFLAEAGWRTLL GSKERDEENDGTPLPVVAKGDELLCEKGEVVERQTQPPRHFTDATLLSAMTGIARFVQ DKDLKKILRATDGLGTEATRAGIIELLFKRSFLTKKGRYIHSTDAGKALIHSLPEMAA RPDMTAHWESVLTQISEKQCRYQDFMQPLVGTLYQLIEQAKRTPVKRFRGIVAPGGGD KKKSAPRKRAGKKSPPAAETGRQTE" misc_feature 1376648..1378564 /gene="topB" /locus_tag="STM1298" /note="DNA topoisomerase 3; Region: PRK07726" /db_xref="CDD:236078" gene complement(1378627..1379985) /gene="gdhA" /locus_tag="STM1299" /db_xref="GeneID:1252817" CDS complement(1378627..1379970) /gene="gdhA" /locus_tag="STM1299" /EC_number="1.4.1.4" /note="NADP-specific glutamate dehydrogenase. (SW:DHE4_SALTY)" /codon_start=1 /transl_table=11 /product="NADP-specific glutamate dehydrogenase" /protein_id="NP_460265.1" /db_xref="GeneID:1252817" /translation="MDQTCSLESFLNHVQKRDPHQTEFAQAVREVMTTLWPFLEQNPR YRHMSLLERLVEPERVIQFRVVWLDDKNQVQVNRAWRVQFNSAIGPYKGGMRFHPSVN LSILKFLGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGP DTDVPAGDIGVGGREVGFMAGMMRKLSNNSSCVFTGKGLSFGGSLIRPEATGYGLVYF TEAMLKRHGLGFEGMRVAVSGSGNVAQYAIEKAMAFGARVVTASDSSGTVVDESGFTP EKLARLCEIKASRDGRVADYAREFGLTYLEGQQPWSVPVDIALPCATQNELDVDAARV LIANGVKAVAEGANMPTTIEATDLFLEAGVLFAPGKAANAGGVATSGLEMAQNAARLS WKAEKVDARLHHIMLDIHHACVEYGGDNKHTNYVQGANIAGFVKVADAMLAQGVI" misc_feature complement(1378630..1379970) /gene="gdhA" /locus_tag="STM1299" /note="NADP-specific glutamate dehydrogenase; Region: PRK09414" /db_xref="CDD:181834" regulatory complement(1379980..1379985) /regulatory_class="ribosome_binding_site" /gene="gdhA" /locus_tag="STM1299" /note="putative RBS for gdhA; RegulonDB:STMS1H001549" gene 1380198..1380484 /locus_tag="STM1300" /db_xref="GeneID:1252818" regulatory 1380198..1380203 /regulatory_class="ribosome_binding_site" /locus_tag="STM1300" /note="putative RBS for STM1300; RegulonDB:STMS1H001550" CDS 1380209..1380484 /locus_tag="STM1300" /note="similar to E. coli orf, hypothetical protein (AAC74830.1); Blastp hit to AAC74830.1 (90 aa), 73% identity in aa 1 - 89" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460266.1" /db_xref="GeneID:1252818" /translation="MRRSLVVAVMAIMPMVGLANQNSRPDIQVNVPPEVFSTRGQSSQ PCIQCCVYQDQNYSEGAVIKVEGVLLQCQRDEKTISTNPLVWRRVKL" misc_feature 1380320..1380478 /locus_tag="STM1300" /note="Protein of unknown function (DUF1496); Region: DUF1496; pfam07383" /db_xref="CDD:429436" gene complement(1380444..1380860) /locus_tag="STM1301" /db_xref="GeneID:1252819" CDS complement(1380444..1380860) /locus_tag="STM1301" /note="similar to E. coli orf, hypothetical protein (AAC74829.1); Blastp hit to AAC74829.1 (135 aa), 77% identity in aa 1 - 135" /codon_start=1 /transl_table=11 /product="putative mutator MutT protein" /protein_id="NP_460267.1" /db_xref="GeneID:1252819" /translation="MIKKLDVVAAIIECDGKILLAQRPAHADQAGLWEFAGGKVEPGE TQPQALIRELREELGIDATPGVYIASHQRDVSGRRIHLHAWHVPAFNGLIRALEHQAL AWCTPEEALEYPLAPADIPLLQAFIALRDARLTDSC" misc_feature complement(1380453..1380857) /locus_tag="STM1301" /note="pyrimidine (deoxy)nucleoside triphosphate diphosphatase; Region: PRK10546" /db_xref="CDD:182536" gene complement(1380933..1381751) /gene="xthA" /locus_tag="STM1302" /db_xref="GeneID:1252820" CDS complement(1380933..1381739) /gene="xthA" /locus_tag="STM1302" /EC_number="3.1.11.2" /note="may repair singlet oxygen induced lesions; exodeoxyribonuclease III. (SW:EX3_SALTY)" /codon_start=1 /transl_table=11 /product="exonuclease III" /protein_id="NP_460268.1" /db_xref="GeneID:1252820" /translation="MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDEMFPL EEVAKLGYNVFYHGQKGHYGVALLTKATPISVRRGFPDDGEEAQRRIIMAEIPSPLGN ITVINGYFPQGESRDHPLKFPAKAQFYQNLQNYLETELKCDNPVLIMGDMNISPTDLD IGIGEENRKRWLRTGKCSFLPEEREWMSRLLKWGLVDTFRQANPQTMDKFSWFDYRSK GFVDNRGLRIDLLLASAPLAERCAETGIDYDIRSMEKPSDHAPVWATFRV" misc_feature complement(1380936..1381739) /gene="xthA" /locus_tag="STM1302" /note="exonuclease III; Provisional; Region: PRK11756" /db_xref="CDD:236970" misc_feature complement(order(1380963..1380965,1381281..1381283, 1381287..1381289,1381404..1381406,1381413..1381415, 1381638..1381640,1381719..1381721)) /gene="xthA" /locus_tag="STM1302" /note="putative phosphate binding site [ion binding]; other site" /db_xref="CDD:197320" misc_feature complement(order(1380963..1380968,1381053..1381055, 1381281..1381283,1381287..1381289,1381413..1381415, 1381638..1381640,1381719..1381721)) /gene="xthA" /locus_tag="STM1302" /note="putative catalytic site [active]" /db_xref="CDD:197320" misc_feature complement(order(1380963..1380965,1380972..1380977, 1381053..1381058,1381062..1381064,1381092..1381097, 1381104..1381106,1381281..1381283,1381287..1381289, 1381377..1381379,1381398..1381400,1381404..1381406, 1381413..1381415,1381557..1381562,1381638..1381640, 1381698..1381706,1381710..1381715)) /gene="xthA" /locus_tag="STM1302" /note="active site" /db_xref="CDD:197320" misc_feature complement(order(1380963..1380968,1381638..1381640, 1381713..1381715)) /gene="xthA" /locus_tag="STM1302" /note="metal binding site A [ion binding]; metal-binding site" /db_xref="CDD:197320" misc_feature complement(order(1380972..1380977,1381092..1381097, 1381377..1381379,1381398..1381400,1381404..1381406, 1381413..1381415,1381557..1381562,1381698..1381706, 1381710..1381715)) /gene="xthA" /locus_tag="STM1302" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:197320" misc_feature complement(order(1380963..1380965,1381056..1381058, 1381062..1381064,1381104..1381106,1381281..1381283, 1381287..1381289,1381404..1381406,1381413..1381415)) /gene="xthA" /locus_tag="STM1302" /note="putative AP binding site [nucleotide binding]; other site" /db_xref="CDD:197320" misc_feature complement(order(1380963..1380965,1381281..1381283, 1381287..1381289,1381413..1381415)) /gene="xthA" /locus_tag="STM1302" /note="putative metal binding site B [ion binding]; other site" /db_xref="CDD:197320" regulatory complement(1381746..1381751) /regulatory_class="ribosome_binding_site" /gene="xthA" /locus_tag="STM1302" /note="putative RBS for xthA; RegulonDB:STMS1H001551" gene 1382176..1383411 /gene="astC" /locus_tag="STM1303" /db_xref="GeneID:1252821" regulatory 1382176..1382181 /regulatory_class="ribosome_binding_site" /gene="astC" /locus_tag="STM1303" /note="putative RBS for astC; RegulonDB:STMS1H001552" CDS 1382185..1383411 /gene="astC" /locus_tag="STM1303" /EC_number="2.6.1.-" /note="contains acetylornitine transaminase activity; similar to E. coli acetylornithine delta-aminotransferase (AAC74818.1); Blastp hit to AAC74818.1 (406 aa), 84% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="succinylornithine transaminase" /protein_id="NP_460269.1" /db_xref="GeneID:1252821" /translation="MSLSVTRENFDEWMVPVYVPAPFIPVRGEGSRLWDQQGKEYIDF AGGIAVNALGHAHPALREALNEQANRFWHIGNGYTNEPALRLAKKLIDATFAERVFFC NSGAEANEAALKLARKYAHDRVGNHKSGIVAFKNAFHGRTLFTVSAGGQPTYSQDFAP LPPDIRHAAYNDLNSASALIDDNTCAVIVEPVQGEGGVIPATKAFLQGLRELCDRHQA LLIFDEVQTGVGRTGELYAYMHYGVTPDILTTAKALGGGFPIGAMLTTQDYASVMTPG THGTTYGGNPLATAVAGKVLDIINTPEMQNGVRQRHDAFIERLNTLNVRFGMFSEIRG LGLLLGCVLQTEFAGKAKLIAQEAAKAGVMVLIAGGDVVRFAPALNVSDEEIATGLDR FALACERLQTGGVPCG" misc_feature 1382185..1383396 /gene="astC" /locus_tag="STM1303" /note="bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional; Region: PRK12381" /db_xref="CDD:183486" misc_feature order(1382494..1382502,1382596..1382601,1382605..1382607, 1382752..1382754,1382851..1382853,1382857..1382862, 1382938..1382940) /gene="astC" /locus_tag="STM1303" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99735" misc_feature order(1382497..1382502,1382596..1382601,1382752..1382754, 1382851..1382853,1382860..1382862,1382938..1382940) /gene="astC" /locus_tag="STM1303" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature 1382938..1382940 /gene="astC" /locus_tag="STM1303" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 1383392..1384436 /gene="astA" /locus_tag="STM1304" /db_xref="GeneID:1252822" regulatory 1383392..1383397 /regulatory_class="ribosome_binding_site" /gene="astA" /locus_tag="STM1304" /note="putative RBS for astA; RegulonDB:STMS1H001553" CDS 1383402..1384436 /gene="astA" /locus_tag="STM1304" /EC_number="2.3.1.109" /note="similar to E. coli orf, hypothetical protein (AAC74817.1); Blastp hit to AAC74817.1 (344 aa), 91% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="arginine succinyltransferase" /protein_id="NP_460270.1" /db_xref="GeneID:1252822" /translation="MRVIRPVEHADIAALMQLAGKTGGGLTSLPANEATLAARIERAL KTWSGELPKGEQGYVFVLEDSETGEVGGICAIEVAVGLNDPWYNYRVGTLVHASKELN VYNALPTLFLSNDHTGSSELCTLFLDPEWRKEGNGYLLSKSRFMFMAAFRDKFNEKVV AEMRGVIDEHGYSPFWQSLGKRFFSMDFSRADFLCGTGQKAFIAELMPKHPIYTHFLS EEAQAVIGEVHPQTAPARAVLEKEGFRYRHYIDIFDGGPTLECDIDRVRAIRKSRLVE VAEGQPAPGDYPACLVANENYHHFRAALVRADPQTSRLVLTAAQLDALKCRAGDHVRL VRLCAEEKTV" misc_feature 1383402..1384433 /gene="astA" /locus_tag="STM1304" /note="arginine succinyltransferase; Provisional; Region: PRK10456" /db_xref="CDD:182474" gene 1384419..1385911 /gene="astD" /locus_tag="STM1305" /db_xref="GeneID:1252823" regulatory 1384419..1384424 /regulatory_class="ribosome_binding_site" /gene="astA" /locus_tag="STM1304" /note="putative RBS for astD; RegulonDB:STMS1H001554" CDS 1384433..1385911 /gene="astD" /locus_tag="STM1305" /EC_number="1.2.1.-" /note="similar to E. coli putative aldehyde dehydrogenase (AAC74816.1); Blastp hit to AAC74816.1 (492 aa), 83% identity in aa 1 - 487" /codon_start=1 /transl_table=11 /product="succinylglutamic semialdehyde dehydrogenase" /protein_id="NP_460271.1" /db_xref="GeneID:1252823" /translation="MTLWINGDWITGQGERRRKTNPVSAEILWQGNDANAAQVAEACQ AARAAFPRWARQPFAARQAIVEKFAALLEAHKAELTEVIARETGKPRWEAATEVTAMI NKIAISIKAYHARTGAQKSELVDGAATLRHRPHGVLAVFGPYNFPGHLPNGHIVPALL AGNTLIFKPSELTPWTGETVIKLWERAGLPAGVLNLVQGGRETGQALSSLDDLDGLLF TGSASTGYQLHRQLSGQPEKILALEMGGNNPLIIEDAANIDAAVHLTLQSAFITAGQR CTCARRLLVKQGAQGDAFLARLVDVAGRLQPGRWDDDPQPFIGGLISAQAAQHVMEAW RQREALGGRTLLAPRKVKEGTSLLTPGIIELTGVADVPDEEVFGPLLNVWRYAHFDEA IRLANNTRFGLSCGLVSTDRAQFEQLLLEARAGIVNWNKPLTGAASTAPFGGVGASGN HRPSAWYAADYCAWPMASLESPELTLPATLSPGLDFSRREAV" misc_feature 1384433..1385893 /gene="astD" /locus_tag="STM1305" /note="succinylglutamic semialdehyde dehydrogenase; Reviewed; Region: astD; PRK09457" /db_xref="CDD:181873" misc_feature order(1384853..1384867,1384889..1384891,1384934..1384936, 1384940..1384945,1385084..1385095,1385102..1385104, 1385111..1385116,1385159..1385167,1385261..1385263, 1385555..1385557,1385561..1385563,1385639..1385641, 1385756..1385758) /gene="astD" /locus_tag="STM1305" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143414" misc_feature order(1384865..1384867,1385159..1385161,1385252..1385254, 1385261..1385263) /gene="astD" /locus_tag="STM1305" /note="catalytic residues [active]" /db_xref="CDD:143414" gene 1385900..1387251 /gene="astB" /locus_tag="STM1306" /db_xref="GeneID:1252824" regulatory 1385900..1385905 /regulatory_class="ribosome_binding_site" /gene="astB" /locus_tag="STM1306" /note="putative RBS for astB; RegulonDB:STMS1H001555" CDS 1385908..1387251 /gene="astB" /locus_tag="STM1306" /note="similar to E. coli orf, hypothetical protein (AAC74815.1); Blastp hit to AAC74815.1 (447 aa), 85% identity in aa 1 - 447" /codon_start=1 /transl_table=11 /product="succinylarginine dihydrolase" /protein_id="NP_460272.1" /db_xref="GeneID:1252824" /translation="MTAHEVNFDGLVGLTHHYAGLSFGNEASTRHRFQVSNPRLAVKQ GLLKMKALADAGFPQAVIPPHERPFIPALRQLGFTGSDEQILDKVARQAPRWLSSVSS ASPMWVANAATVCPSADALDGKVHLTVANLNNKFHRALEAPVTEALLRAIFRDESQFS VHSALPQVALLGDEGAANHNRLGGEYGSAGVQLFVYGREEENEIRPARYPARQSREAS EAVARLNQVNPQQVIFAQQNPEVIDQGVFHNDVIAVSNRQVLFCHEAAFARQKVLINQ LRTRVDGFMAIEVPAGEVSVSDAVATYLFNSQLLSRNDGLMLLVLPRECQDHVGVWRY LNKLVAEDNPISAMQVFDLRESMANGGGPACLRLRVVLTEEERRAVNPAVMMNDALFT ALNAWADRYYRDRLTAADLADPLLLREGREALDVLTRLLDLGSVYPFQQTGAADG" misc_feature 1385914..1387233 /gene="astB" /locus_tag="STM1306" /note="Succinylarginine dihydrolase [Amino acid transport and metabolism]; Region: AstB; COG3724" /db_xref="CDD:442938" gene 1387231..1388212 /gene="astE" /locus_tag="STM1307" /db_xref="GeneID:1252825" regulatory 1387231..1387236 /regulatory_class="ribosome_binding_site" /gene="astE" /locus_tag="STM1307" /note="putative RBS for astE; RegulonDB:STMS1H001556" CDS 1387244..1388212 /gene="astE" /locus_tag="STM1307" /EC_number="3.1.-.-" /note="similar to E. coli orf, hypothetical protein (AAC74814.1); Blastp hit to AAC74814.1 (322 aa), 70% identity in aa 1 - 321" /codon_start=1 /transl_table=11 /product="succinylglutamate desuccinylase" /protein_id="NP_460273.1" /db_xref="GeneID:1252825" /translation="MDNFLALTLSGTTPRVTQGKGAGFRWRWLGHGLLELTPDAPVDR ALILSAGIHGNETAPVEMLDKLLSALYSGSLTLTWRVLVVLGNPQALAAGIRYCHSDM NRMFGGRWQSFAESDETRRARELELSLETFFSSGQARVRWHLDLHTAIRGSHHLRFGV LPQRDRPWETDFLAWLGAAGLEALVFHQAPGGTFTHFSSEHFGALSCTLELGKALPFR QNDLTQFNVTSQALSALLSGVETSTSFSPPLRYRVVSQITRHSDKFALYMDAQTLNFT AFAKGTLLAEEGDKRVTVTHDVEYVLFPNPSVACGLRAGLMLERLP" misc_feature 1387244..1388209 /gene="astE" /locus_tag="STM1307" /note="succinylglutamate desuccinylase; Provisional; Region: PRK05324" /db_xref="CDD:235408" misc_feature order(1387400..1387402,1387409..1387411,1387529..1387531, 1387550..1387555,1387682..1387684,1387721..1387723, 1387817..1387819,1387829..1387831,1387871..1387873) /gene="astE" /locus_tag="STM1307" /note="active site" /db_xref="CDD:349428" gene 1388532..1389033 /gene="spy" /locus_tag="STM1308" /db_xref="GeneID:1252826" regulatory 1388532..1388537 /regulatory_class="ribosome_binding_site" /gene="spy" /locus_tag="STM1308" /note="putative RBS for spy; RegulonDB:STMS1H001557" CDS 1388548..1389033 /gene="spy" /locus_tag="STM1308" /note="similar to E. coli periplasmic protein related to spheroblast formation (AAC74813.1); Blastp hit to AAC74813.1 (161 aa), 89% identity in aa 1 - 161" /codon_start=1 /transl_table=11 /product="periplasmic protein related to spheroblast formation" /protein_id="NP_460274.1" /db_xref="GeneID:1252826" /translation="MRKLTALFVASTLAMGAANLAHAAETTTAAPADAKPMMQHKGKF GPHHDMMFKNLNLTDAQKQQIRDIMKAQREQMKRPLLEERRAMHDIIASDTFDKAKAE AQITKMEAQRKANMLAHMETQNKIYNVLTPEQKKQYNANFEKRLTERPAQEGKMPAAA E" misc_feature 1388548..1389030 /gene="spy" /locus_tag="STM1308" /note="periplasmic protein; Reviewed; Region: PRK10455" /db_xref="CDD:182473" misc_feature order(1388797..1388799,1388809..1388811,1388818..1388823, 1388833..1388835,1388839..1388841,1388851..1388853, 1388860..1388862,1388872..1388874,1388884..1388886, 1388896..1388898,1388905..1388910,1388917..1388919, 1388926..1388928,1388959..1388964,1388971..1388973) /gene="spy" /locus_tag="STM1308" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:197366" gene complement(1389108..1390016) /locus_tag="STM1309" /db_xref="GeneID:1252827" CDS complement(1389108..1390016) /locus_tag="STM1309" /note="similar to E. coli putative excinuclease subunit (AAC74811.1); Blastp hit to AAC74811.1 (295 aa), 80% identity in aa 1 - 286" /codon_start=1 /transl_table=11 /product="putative nuclease subunit of the excinuclease complex" /protein_id="NP_460275.1" /db_xref="GeneID:1252827" /translation="MNNQLTEITVVRRQSAPRLEFEAAAIYEYPEHLRPFLSEAPALP GVYIFHSESDTLPLYIGKSVNIRSRVLSHLRTPDEATMLRQARRISWICTAGEMGALL LEARLIKEQQPLFNKRLRRNRQLCSLQLSEQKIEVVSARSVDFSHEPNLFGLFANRRA ALQSLQNLADEQKLCYGLLGLEPVSRGRACFRFALKRCAGACCGQETPQAHFLRLQAS LERLRVVCWPWKGAIALKESRPQMTQFHIINNWLWLGAVPSLDEAATLVRTPAGFDQD GYKILCKPLMSGQYEIIELHTDCRQS" misc_feature complement(1389132..1389986) /locus_tag="STM1309" /note="excinuclease Cho; Region: PRK10545" /db_xref="CDD:182535" gene complement(1390110..1390948) /gene="nadE" /locus_tag="STM1310" /db_xref="GeneID:1252828" CDS complement(1390110..1390937) /gene="nadE" /locus_tag="STM1310" /EC_number="6.3.5.1" /note="prefers NH3 over glutamine; similar to E. coli NAD synthetase, prefers NH3 over glutamine (AAC74810.1); Blastp hit to AAC74810.1 (275 aa), 89% identity in aa 1 - 275" /codon_start=1 /transl_table=11 /product="NAD synthetase" /protein_id="NP_460276.1" /db_xref="GeneID:1252828" /translation="MTLQQEIIQALGAKPHINPEEEIRRSVDFLKAYLKTYPFLKSLV LGISGGQDSTLAGKLSQMAIAELREETGDNALQFIAVRLPYGVQADEQDCQDAIAFIQ PDRVLTVNIKGAVLASEQALREAGIELSDFVRGNEKARERMKAQYSIAGMTHGVVVGT DHAAEAITGFFTKYGDGGTDINPLHRLNKRQGKQLLAALGCPEHLYKKVPTADLEDDR PSLPDEAALGVTYDNIDDYLEGKTLDPAIAKTIEGWYVKTEHKRRLPITVFDDFWKR" misc_feature complement(1390128..1390934) /gene="nadE" /locus_tag="STM1310" /note="ammonia-dependent NAD(+) synthetase; Region: nadE; PRK00768" /db_xref="CDD:234831" regulatory complement(1390943..1390948) /regulatory_class="ribosome_binding_site" /gene="nadE" /locus_tag="STM1310" /note="putative RBS for nadE; RegulonDB:STMS1H001558" gene 1391028..1391497 /gene="osmE" /locus_tag="STM1311" /db_xref="GeneID:1252829" regulatory 1391028..1391036 /regulatory_class="minus_35_signal" /gene="osmE" /locus_tag="STM1311" /note="putative -35_signal for osmE; RegulonDB:STMLTH004482" regulatory 1391052..1391060 /regulatory_class="minus_10_signal" /gene="osmE" /locus_tag="STM1311" /note="putative -10_signal for osmE; RegulonDB:STMLTH004482" protein_bind 1391135..1391149 /gene="osmE" /locus_tag="STM1311" /note="putative binding site for IHF, RegulonDB: STMS1H000219" /bound_moiety="IHF" regulatory 1391145..1391150 /regulatory_class="ribosome_binding_site" /gene="osmE" /locus_tag="STM1311" /note="putative RBS for osmE; RegulonDB:STMS1H001559" CDS 1391156..1391497 /gene="osmE" /locus_tag="STM1311" /note="similar to E. coli activator of ntrL gene (AAC74809.1); Blastp hit to AAC74809.1 (112 aa), 96% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="transcriptional activator of ntrL gene" /protein_id="NP_460277.1" /db_xref="GeneID:1252829" /translation="MNKNVAGILSAAAVMTMLAGCTAYDRTKDQFVEPVVKDVKKGMS RAQVAQIAGKPSSEVSMIHARGTCQTYILGQRDGKAETYFVALDDTGHVINSGYQTCA EYDTDPQAPKQ" misc_feature 1391165..1391491 /gene="osmE" /locus_tag="STM1311" /note="osmotically-inducible lipoprotein OsmE; Region: PRK11251" /db_xref="CDD:183058" gene 1391785..1392118 /gene="celA" /locus_tag="STM1312" /db_xref="GeneID:1252830" regulatory 1391785..1391790 /regulatory_class="ribosome_binding_site" /gene="celA" /locus_tag="STM1312" /note="putative RBS for celA; RegulonDB:STMS1H001560" CDS 1391798..1392118 /gene="celA" /locus_tag="STM1312" /note="similar to E. coli PEP-dependent phosphotransferase enzyme IV for cellobiose, arbutin, and salicin (AAC74808.1); Blastp hit to AAC74808.1 (106 aa), 96% identity in aa 1 - 106" /codon_start=1 /transl_table=11 /product="PTS family sugar specific enzyme IIB for cellobiose, arbutin, and salicin" /protein_id="NP_460278.1" /db_xref="GeneID:1252830" /translation="MEKKHIYLFCSAGMSTSLLVSKMRAQAEKYEVPVIIEAFPETLA GEKGPAADVVLLGPQIAYMLPEIQRLLPGKPVEVIDSMLYGKVDGLGVLKAAVAAIKK AAAN" misc_feature 1391798..1392115 /gene="celA" /locus_tag="STM1312" /note="PTS sugar transporter subunit IIB; Region: PRK10499" /db_xref="CDD:182499" misc_feature order(1391825..1391827,1391831..1391836,1391840..1391845, 1391972..1391974,1392047..1392049) /gene="celA" /locus_tag="STM1312" /note="active site" /db_xref="CDD:99906" misc_feature 1391825..1391845 /gene="celA" /locus_tag="STM1312" /note="P-loop; other site" /db_xref="CDD:99906" misc_feature 1391825..1391827 /gene="celA" /locus_tag="STM1312" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99906" gene 1392187..1393559 /gene="celB" /locus_tag="STM1313" /db_xref="GeneID:1252831" regulatory 1392187..1392192 /regulatory_class="ribosome_binding_site" /gene="celB" /locus_tag="STM1313" /note="putative RBS for celB; RegulonDB:STMS1H001561" CDS 1392201..1393559 /gene="celB" /locus_tag="STM1313" /note="similar to E. coli PEP-dependent phosphotransferase enzyme II for cellobiose, arbutin, and salicin (AAC74807.1); Blastp hit to AAC74807.1 (452 aa), 94% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="PTS family sugar specific enzyme II for cellobiose, arbutin, and salicin" /protein_id="NP_460279.1" /db_xref="GeneID:1252831" /translation="MSNVIASLEKVLLPFAVKIGKQPHVNAIKNGFIRLMPLTLAGAM FVLINNVFLSFGEGSFFYSMGIRLDASTIETLNGLKGIGGNVYNGTLGIMSLMAPFFI GMALAEERKVDALAAGLLSVAAFMTVTPYSVGEAYAVGANWLGGANIISGIIIGLVVA EMFTFIVRRNWVIKLPDSVPASVSRSFSALIPGFIILSIMGIISWALSNYGSNFHQII MDTISTPLASLGSVVGWAYVIFVPLLWFFGIHGSLALTALDSGIMTPWALENISIYQQ YGSVDAALEAGKTFHIWAKPMLDSYIFLGGSGATLGLIIAIFLASRRADYRQVAKLAL PSGIFQINEPILFGLPIIMNPVMFIPFILVQPILAAITLVAYYLGIIPPITNIAPWTM PTGLGAFFNTNGSVAALLVALFNLAVATLIYLPFVVVANKAQNAIEQEESEEDIANAL KF" misc_feature 1392201..1393556 /gene="celB" /locus_tag="STM1313" /note="PTS system N,N'-diacetylchitobiose-specific transporter subunit IIC; Provisional; Region: PRK10297" /db_xref="CDD:182363" gene 1393599..1393957 /gene="celC" /locus_tag="STM1314" /db_xref="GeneID:1252832" regulatory 1393599..1393604 /regulatory_class="ribosome_binding_site" /gene="celC" /locus_tag="STM1314" /note="putative RBS for celC; RegulonDB:STMS1H001562" CDS 1393610..1393957 /gene="celC" /locus_tag="STM1314" /note="similar to E. coli PEP-dependent phosphotransferase enzyme III for cellobiose, arbutin, and salicin (AAC74806.1); Blastp hit to AAC74806.1 (116 aa), 87% identity in aa 1 - 115" /codon_start=1 /transl_table=11 /product="PTS family sugar specific enzyme III for cellobiose, arbutin, and salicin" /protein_id="NP_460280.1" /db_xref="GeneID:1252832" /translation="MFDLENVVDNQTAAEELEEVVMGLIINSGQARSLAYGALRKAKE GDFEAAKAMMDQSRIALNEAHLVQTKLIEGDQGEGKMKVSLVLVHAQDHLMTSMLARE LIAELIELHEKLK" misc_feature 1393610..1393954 /gene="celC" /locus_tag="STM1314" /note="PTS N,N'-diacetylchitobiose transporter subunit IIA; Region: PRK10454" /db_xref="CDD:182472" misc_feature order(1393658..1393660,1393820..1393822,1393868..1393873, 1393892..1393894) /gene="celC" /locus_tag="STM1314" /note="methionine cluster [active]" /db_xref="CDD:238133" misc_feature order(1393703..1393705,1393874..1393876,1393880..1393888) /gene="celC" /locus_tag="STM1314" /note="active site" /db_xref="CDD:238133" misc_feature 1393874..1393876 /gene="celC" /locus_tag="STM1314" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238133" misc_feature 1393883..1393885 /gene="celC" /locus_tag="STM1314" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238133" gene 1393958..1394810 /gene="celD" /locus_tag="STM1315" /db_xref="GeneID:1252833" regulatory 1393958..1393963 /regulatory_class="ribosome_binding_site" /gene="celD" /locus_tag="STM1315" /note="putative RBS for celD; RegulonDB:STMS1H001563" CDS 1393968..1394810 /gene="celD" /locus_tag="STM1315" /note="AraC/XylS family; similar to E. coli negative transcriptional regulator of cel operon (AAC74805.1); Blastp hit to AAC74805.1 (280 aa), 85% identity in aa 1 - 280" /codon_start=1 /transl_table=11 /product="transcriptional repressor of cel operon" /protein_id="NP_460281.1" /db_xref="GeneID:1252833" /translation="MMQLQVNATEIKTVYEQQLFNGKNFHVFIYNKTESVTGLHQHDY YEFTLVLTGRYYQEINGKRVLLERGDFVFIPVGSNHQSFYEFGATRILNVGISKRFFE QHYLPLLPFCFVASQVYRANSTFLTYIETVIASLNFRGNGLDEFIEVVTFYIINRLRH YREEQVYDDIPQWLKATVEIMHDKTQFGEHALENMVRLSAKSQEYLTRATRRYYSKTP MQIINEIRINFAKKQLEMTNYSVTDIAYEAGYSSPSLFIKTFKKMTSFTPNSYRKRLT EINE" misc_feature 1393971..1394804 /gene="celD" /locus_tag="STM1315" /note="DNA-binding transcriptional regulator ChbR; Provisional; Region: PRK10296" /db_xref="CDD:182362" gene 1394923..1396290 /gene="celF" /locus_tag="STM1316" /db_xref="GeneID:1252834" regulatory 1394923..1394928 /regulatory_class="ribosome_binding_site" /gene="celF" /locus_tag="STM1316" /note="putative RBS for celF; RegulonDB:STMS1H001564" CDS 1394935..1396290 /gene="celF" /locus_tag="STM1316" /EC_number="3.2.1.86" /note="similar to E. coli phospho-beta-glucosidase; cryptic (AAC74804.1); Blastp hit to AAC74804.1 (450 aa), 90% identity in aa 1 - 450" /codon_start=1 /transl_table=11 /product="cellobiose-6-phosphate hydrolase" /protein_id="NP_460282.1" /db_xref="GeneID:1252834" /translation="MSQKLKVVTIGGGSSYTPELLEGFIKRYHELPVTELWLVDVEDG KEKLGIIYDLCQRMIDKAGVPLKLYKTLDRREALKGANFVTTQLRVGQLKARELDERI PLSHGYLGQETNGAGGLFKGLRTIPVIFDIIKDVEELCPNAWVINFTNPAGMVTEAVY RHTNFKKFIGVCNIPVGMKMFIHDVLALNENDDLSIDLFGLNHMVFIKDVLVNGTSRF AELLDGVASGQLKASTVKNIFDLPFSEGLIRSLNMLPCSYLLYYFKQKEMLAIEMGEY YKGGARAQVVQKVEKQLFDLYKNPELNVKPKELEQRGGAYYSDAACEVINAIYNDKQT EHYVNIPHHGHVENIPADWAVEMTCILGRNGATPHPRITRFDEKVLGLIHTIKGFEVA ASNAALSGNFNDVLLALNLSPLVHSDRDAEVLARELILAHEKWLPNFAACIEALKGKH H" misc_feature 1394947..1396242 /gene="celF" /locus_tag="STM1316" /note="Glycoside Hydrolases Family 4; Phospho-beta-glucosidase; Region: GH4_P_beta_glucosidase; cd05296" /db_xref="CDD:133432" misc_feature order(1394971..1394976,1394980..1394982,1395052..1395057, 1395073..1395075,1395193..1395201,1395268..1395270, 1395328..1395330,1395376..1395378,1395382..1395384, 1395802..1395804,1395868..1395870,1395883..1395885) /gene="celF" /locus_tag="STM1316" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:133432" misc_feature order(1395220..1395222,1395268..1395270,1395382..1395384, 1395451..1395453,1395541..1395543,1395706..1395708, 1395778..1395780,1395868..1395873,1395883..1395885) /gene="celF" /locus_tag="STM1316" /note="sugar binding site [chemical binding]; other site" /db_xref="CDD:133432" misc_feature order(1395448..1395450,1395541..1395543) /gene="celF" /locus_tag="STM1316" /note="divalent metal binding site [ion binding]; other site" /db_xref="CDD:133432" misc_feature order(1395508..1395510,1395517..1395519,1395565..1395567, 1395574..1395576,1395925..1395927,1395961..1395963, 1396018..1396023,1396027..1396029,1396033..1396044) /gene="celF" /locus_tag="STM1316" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:133432" misc_feature order(1395664..1395666,1395670..1395672,1395679..1395687, 1395721..1395723,1395727..1395732,1396060..1396065, 1396084..1396086,1396096..1396098,1396117..1396119, 1396141..1396143,1396150..1396155,1396183..1396188, 1396192..1396194,1396198..1396200) /gene="celF" /locus_tag="STM1316" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:133432" gene 1396293..1397061 /gene="celG" /locus_tag="STM1317" /db_xref="GeneID:1252835" regulatory 1396293..1396298 /regulatory_class="ribosome_binding_site" /gene="celG" /locus_tag="STM1317" /note="putative RBS for celG; RegulonDB:STMS1H001565" CDS 1396303..1397061 /gene="celG" /locus_tag="STM1317" /note="similar to E. coli orf, hypothetical protein (AAC74803.1); Blastp hit to AAC74803.1 (249 aa), 76% identity in aa 1 - 249" /codon_start=1 /transl_table=11 /product="putative glucosidase" /protein_id="NP_460283.1" /db_xref="GeneID:1252835" /translation="MERVLIVNADDFGLSKGQNYGIVEAYRNGVVTSTTALVNGEAID HAAQLSRELPALGVGMHFVLTLGKPVSEMPGLTRDGLLGKWIWQMAEEDTLPLDEIAH ELACQYQRFIDVFGSEPTHLDSHHHVHMFPQIFPIVARFAAQRGIALRIDRQTVLNAD DLPSDLRSTQGFSSEFYGEEITEACFLRILDASAHRGEASLEVMCHPAFVDNIIRQSA YCYPRLTELEVLTSASLKAAIAERGYRPGSFLDI" misc_feature 1396303..1397058 /gene="celG" /locus_tag="STM1317" /note="chitin disaccharide deacetylase; Region: PRK02134" /db_xref="CDD:235007" misc_feature order(1396330..1396341,1396477..1396485,1396660..1396677, 1396918..1396920,1396969..1396971) /gene="celG" /locus_tag="STM1317" /note="YdjC motif; other site" /db_xref="CDD:212114" misc_feature order(1396330..1396335,1396339..1396341,1396477..1396479, 1396483..1396485,1396663..1396665,1396669..1396671, 1396675..1396677,1396918..1396920,1396969..1396971) /gene="celG" /locus_tag="STM1317" /note="putative active site [active]" /db_xref="CDD:212114" misc_feature order(1396348..1396350,1396414..1396416,1396423..1396437, 1396534..1396539,1396543..1396545,1396606..1396608, 1396630..1396632,1396639..1396641) /gene="celG" /locus_tag="STM1317" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:212114" gene complement(1397105..1399372) /gene="katE" /locus_tag="STM1318" /db_xref="GeneID:1252836" CDS complement(1397105..1399357) /gene="katE" /locus_tag="STM1318" /EC_number="1.11.1.6" /note="RpoS dependent; similar to E. coli catalase; hydroperoxidase HPII(III) (AAC74802.1); Blastp hit to AAC74802.1 (753 aa), 88% identity in aa 4 - 753" /codon_start=1 /transl_table=11 /product="catalase" /protein_id="NP_460284.1" /db_xref="GeneID:1252836" /translation="MSHNEKSPHQSPVHDTRESQPGLDSLAPSDGSHRPTPETTPPGA QPTAPGSLKAPETANDKLTALDAFRKGSENYALTTNQGVRIADDQNSLRAGSRGPTLL EDFILREKITHFDHERIPERIVHARGSAAHGYFQPYKDLSDITKAAFLCDPQKITPVF VRFSTVQGGAGSADTVRDIRGFATKFYTEEGIFDLVGNNTPIFFIQDAHKFPDFVHAV KPEPHWAIPQGQSAHDTFWDYVSLQPETLHNVMWAMSDRGIPRSYRTMEGFGIHTFRL INAQGKATFVRFHWKPLAGKASLVWDESQKLTGRDPDFHRRDLWEAIEAGDFPEYELG LQLIAEEDEFKFDFDLLDPTKLIPEELVPVQRVGKMVLNRNPDNFFAENEQAAFHPGH IVPGIDFTNDPLLQGRLFSYTDTQISRLGGPNFHEIPINRPTCPYHNFQRDGMHRMDI DTNPANYEPNSINDNWPRETPPAPKRGGFESYQERVDGNKIRERSPSFGEYYSHPRLF WLSQTPIEQQHIIDAFSFELGKVARAYIRERVVDQLAHIDVTLAQGVAHNLGFALTHE QTQIAPPPDVNGLKKDPALSLYAVPDGDVKGRVVAILLNDKVNAAELLTILQALKAKG VHAKLLYSRMGEVTADDGSTLTIAATFAGAPSLTVDAVIVPCGNIADIESCGDARYYL LEAYKHLKPIALAGDARRFKALLNIDSQGEEGLVEADNVDHHFMDTLLTLMAAHRVWS RAGKINAIPA" misc_feature complement(1397108..1399357) /gene="katE" /locus_tag="STM1318" /note="hydroperoxidase II; Provisional; Region: katE; PRK11249" /db_xref="CDD:236886" regulatory complement(1399367..1399372) /regulatory_class="ribosome_binding_site" /gene="katE" /locus_tag="STM1318" /note="putative RBS for katE; RegulonDB:STMS1H001566" gene 1399662..1399964 /gene="cedA" /locus_tag="STM1319" /db_xref="GeneID:1252837" regulatory 1399662..1399670 /regulatory_class="minus_35_signal" /gene="cedA" /locus_tag="STM1319" /note="putative -35_signal for cedA; RegulonDB:STMLTH004483" regulatory 1399689..1399697 /regulatory_class="minus_10_signal" /gene="cedA" /locus_tag="STM1319" /note="putative -10_signal for cedA; RegulonDB:STMLTH004483" regulatory 1399711..1399716 /regulatory_class="ribosome_binding_site" /gene="cedA" /locus_tag="STM1319" /note="putative RBS for cedA; RegulonDB:STMS1H001567" CDS 1399722..1399964 /gene="cedA" /locus_tag="STM1319" /note="affects inhibition after overreplication of chromosome in dnaAcos mutants; similar to E. coli orf, hypothetical protein (AAC74801.1); Blastp hit to AAC74801.1 (87 aa), 82% identity in aa 8 - 87" /codon_start=1 /transl_table=11 /product="cell division modulator" /protein_id="NP_460285.1" /db_xref="GeneID:1252837" /translation="MMKPLRQQNRQIISYIPRVEPAPPEHAIKMDTFRDVWILRGKYV AFVLTRESFQRSPAFSVPESAQRWANQVRQENEIAD" misc_feature 1399722..1399961 /gene="cedA" /locus_tag="STM1319" /note="cell division activator CedA; Region: PRK10113" /db_xref="CDD:182246" gene complement(1400066..1401470) /gene="ydjN" /locus_tag="STM1320" /db_xref="GeneID:1252838" CDS complement(1400066..1401457) /gene="ydjN" /locus_tag="STM1320" /note="putative domain shared with transporter; similar to E. coli part of a kinase (AAC74799.1); Blastp hit to AAC74799.1 (463 aa), 96% identity in aa 1 - 462" /codon_start=1 /transl_table=11 /product="kinase-like protein" /protein_id="NP_460286.1" /db_xref="GeneID:1252838" /translation="MNFPLIANIAVFVILLFVLAQARHKQWSLAKKVLVGLVMGVVFG LALHTIYGADSQVLKDSIQWFNIVGNGYVQLLQMIVMPLVFASILSAVARLHNASQLG KISFLTIGTLLFTTLIAALVGVLVTNLFGLTAEGLVQGGAETARLNAIETSYVGKVAD LSVPQLVLSFVPKNPFADLTGANPTSIISVVIFAAFLGVAALKLLKDDAPKGERVLVA IDTLQSWVMKLVRLVMQLTPYGVLALMTKVVAGSNLQDIIKLGSFVVASYLGLAIMFV VHGILLGVNGISPLKYFRKVWPVLTFAFTSRSSAASIPLNVEAQTRRLGVPESIASFA ASFGATIGQNGCAGLYPAMLAVMVAPTVGINPLDPVWIATLVGIVTVSSAGVAGVGGG ATFAALIVLPAMGLPVTLVALLISVEPLIDMGRTALNVSGSMTAGTLTSQWLKQTDKT ILDSEEDAELAHR" misc_feature complement(1400072..1401457) /gene="ydjN" /locus_tag="STM1320" /note="L-cystine transporter TcyP, sodium:dicarboxylate symporter family [Amino acid transport and metabolism]; Region: TcyP; COG1823" /db_xref="CDD:441428" regulatory complement(1401465..1401470) /regulatory_class="ribosome_binding_site" /gene="ydjN" /locus_tag="STM1320" /note="putative RBS for ydjN; RegulonDB:STMS1H001568" gene complement(1401594..1402193) /gene="ydjM" /locus_tag="STM1321" /db_xref="GeneID:1252839" CDS complement(1401594..1402193) /gene="ydjM" /locus_tag="STM1321" /note="putative SOS response; similar to E. coli orf, hypothetical protein (AAC74798.1); Blastp hit to AAC74798.1 (200 aa), 86% identity in aa 1 - 199" /codon_start=1 /transl_table=11 /product="LexA regulated gene" /protein_id="NP_460287.3" /db_xref="GeneID:1252839" /translation="MGFIMTAEGHLLFSIASAVFAKNAELTPVLAHGDWWHIIPSAIL TCLLPDIDHPKSFLGQRLKWVSKPIARAFGHRGFTHSLLAVFALLATFYLKVPDTWII PADALQGMVLGYLSHIVADMLTPAGVPLLWPCRWRFRLPILAPRKGNQLERFLCMALF AWAVWMPQSMPENNVIRWSSQMITILQMQFNRFINHQID" misc_feature complement(1401597..1402181) /gene="ydjM" /locus_tag="STM1321" /note="metal-dependent hydrolase; Region: PRK11648" /db_xref="CDD:183256" gene complement(1402331..1403013) /gene="yniC" /locus_tag="STM1322" /db_xref="GeneID:1252840" CDS complement(1402331..1402999) /gene="yniC" /locus_tag="STM1322" /note="similar to E. coli putative phosphatase (AAC74797.1); Blastp hit to AAC74797.1 (222 aa), 90% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="putative enzyme" /protein_id="NP_460288.1" /db_xref="GeneID:1252840" /translation="MSTPRQILAAIFDMDGLLIDSEPLWDRAELDVMASLGVDITRRH ELPDTLGLRIDMVVDLWFAQQPWNGPDRQEVTNRVIARAITLIEETRPLLPGVREAVA LCKAQGLLVGLASASPLHMLEKVLTMFELRDSFDALASAEKLPYSKPHPQVYLDCAAK LGVDPLTCVALEDSVNGLIAAKAARMRAIVVPAEENQPDPRFALANVKLNSLTELTAA HLLG" misc_feature complement(1402334..1402999) /gene="yniC" /locus_tag="STM1322" /note="hexitol phosphatase HxpB; Region: PRK10826" /db_xref="CDD:236770" misc_feature complement(order(1402469..1402474,1402481..1402486, 1402556..1402558,1402652..1402657,1402949..1402963)) /gene="yniC" /locus_tag="STM1322" /note="active site" /db_xref="CDD:319808" misc_feature complement(order(1402469..1402474,1402481..1402486, 1402556..1402558,1402652..1402657,1402949..1402963)) /gene="yniC" /locus_tag="STM1322" /note="active site" /db_xref="CDD:319808" regulatory complement(1403008..1403013) /regulatory_class="ribosome_binding_site" /gene="yniC" /locus_tag="STM1322" /note="putative RBS for yniC; RegulonDB:STMS1H001569" gene 1403137..1403684 /gene="yniB" /locus_tag="STM1323" /db_xref="GeneID:1252841" regulatory 1403137..1403142 /regulatory_class="ribosome_binding_site" /gene="yniB" /locus_tag="STM1323" /note="putative RBS for yniB; RegulonDB:STMS1H001570" CDS 1403148..1403684 /gene="yniB" /locus_tag="STM1323" /note="similar to E. coli orf, hypothetical protein (AAC74796.1); Blastp hit to AAC74796.1 (178 aa), 83% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="putative regulator" /protein_id="NP_460289.1" /db_xref="GeneID:1252841" /translation="MTYQQAGRIAILKRVVGWVIFIPALLSTLISVLKFMYAHSEKQE GINAVMLDFTHVMIDMMRVNTPFLNVFWYNSPTPNFQGSLNIGFWLIFILIFVGLAMQ DSGARMSRQSRFLREGVEDQLILEKAKGAEGLTREQIESRIVVPHHTIFLQFFPLYIL PVIIIVLGYFFFSLLGFM" misc_feature 1403190..1403678 /gene="yniB" /locus_tag="STM1323" /note="YniB-like protein; Region: YniB; pfam14002" /db_xref="CDD:433637" gene complement(1403727..1404602) /locus_tag="STM1324" /db_xref="GeneID:1252842" CDS complement(1403727..1404587) /locus_tag="STM1324" /note="similar to E. coli orf, hypothetical protein (AAC74795.1); Blastp hit to AAC74795.1 (286 aa), 92% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460290.1" /db_xref="GeneID:1252842" /translation="MWQAISRLLSEQVGEGEIELRNELPGGEVHAAWHLRYAGHDFFV KCDEREMLRGFTAEADQLELLSRSKTVVVPKVWAVGSDRDYSFLVMDYLSPRPLDAHN AFILGQQLARLHQWSDQPQFGLDFDNALSTTPQPNTWQRRWSTFFAEQRIGWQLELAA EKGITFGNIDAIVEHVQQRLASHQPQPSLLHGDLWSANCALGPDGPYIFDPACYWGDR ECDLAMLPLHTDQPPQIYDGYQSVSPLPLDFLDRQPIYQLYTLLNRARLFGGQHLATA QKAMDRLLAV" misc_feature complement(1403733..1404587) /locus_tag="STM1324" /note="Fructosamine kinase; Region: Fructosamin_kin; pfam03881" /db_xref="CDD:427564" regulatory complement(1404597..1404602) /regulatory_class="ribosome_binding_site" /locus_tag="STM1324" /note="putative RBS for STM1324; RegulonDB:STMS1H001571" gene complement(1404694..1404994) /gene="ydiZ" /locus_tag="STM1325" /db_xref="GeneID:1252843" CDS complement(1404694..1404984) /gene="ydiZ" /locus_tag="STM1325" /note="similar to E. coli orf, hypothetical protein (AAC74794.1); Blastp hit to AAC74794.1 (96 aa), 69% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460291.1" /db_xref="GeneID:1252843" /translation="MASGDITRYVITVTFHEDSLTEINELNNHLTRSGFLLTLTDDEG DVHELGTNTFGFVSAQSADEIKALVAGLAKSALDKDVDITVATWEAWSKNAQ" misc_feature complement(1404706..1404966) /gene="ydiZ" /locus_tag="STM1325" /note="Endoribonuclease GhoS; Region: GhoS; pfam11080" /db_xref="CDD:431644" regulatory complement(1404989..1404994) /regulatory_class="ribosome_binding_site" /gene="ydiZ" /locus_tag="STM1325" /note="putative RBS for ydiZ; RegulonDB:STMS1H001572" gene complement(1405081..1406025) /gene="pfkB" /locus_tag="STM1326" /db_xref="GeneID:1252844" CDS complement(1405081..1406013) /gene="pfkB" /locus_tag="STM1326" /EC_number="2.7.1.11" /note="similar to E. coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); Blastp hit to AAC74793.1 (309 aa), 92% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase II" /protein_id="NP_460292.1" /db_xref="GeneID:1252844" /translation="MVRIYTLTLAPSLDSATITPQIYPEGKLRCSAPVFEPGGGGINV ARAIAHLGGTATAIFPAGGATGEHLVALLADENVPVSTVDAKDWTRQNLHVHVESSGE QYRFVMPGATLDDDEFRQLEEQVLEIESGAILVISGSLPPGVKVEKLTQLISAAQKQG IRCIIDSSGDALTAALALGDIELVKPNLKELSALVNRDLTQPDDVRKAAQELVQSGKA RRVVVSLGPQGALGIDSENCIQVVPPPVKSQSTVGAGDSMVGAMTLKLAQDASLEEMV RFGVAAGSAATLNQGTRLCSRDDTQKIYAYLSAQ" misc_feature complement(1405087..1406013) /gene="pfkB" /locus_tag="STM1326" /note="6-phosphofructokinase 2; Provisional; Region: PRK10294" /db_xref="CDD:182361" misc_feature complement(order(1405603..1405605,1405843..1405845, 1405849..1405851,1405867..1405869,1405879..1405881)) /gene="pfkB" /locus_tag="STM1326" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:238570" misc_feature complement(order(1405246..1405248,1405252..1405254, 1405324..1405326,1405342..1405344,1405453..1405455, 1405459..1405461,1405516..1405518)) /gene="pfkB" /locus_tag="STM1326" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:238570" regulatory complement(1406020..1406025) /regulatory_class="ribosome_binding_site" /gene="pfkB" /locus_tag="STM1326" /note="putative RBS for pfkB; RegulonDB:STMS1H001573" gene 1406287..1407060 /gene="ydiY" /locus_tag="STM1327" /db_xref="GeneID:1252845" regulatory 1406287..1406292 /regulatory_class="ribosome_binding_site" /gene="ydiY" /locus_tag="STM1327" /note="putative RBS for ydiY; RegulonDB:STMS1H001574" CDS 1406302..1407060 /gene="ydiY" /locus_tag="STM1327" /note="similar to E. coli orf, hypothetical protein (AAC74792.1); Blastp hit to AAC74792.1 (252 aa), 88% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="putative salt-induced outer membrane protein" /protein_id="NP_460293.1" /db_xref="GeneID:1252845" /translation="MKLLKAVPAVVMLAGGVFASLYAAADDSVFTVMDDPSTAKKPFE GNLNAGYLAQSGNTKSSSLTADTAMTWYGQRTAWSLWGNASNTSSNDERSSEKYAVGA RNRFNMTDYDYTFGQASWLTDRFNGYRQRDVLTAGYGRQFLNGPVHSFRFEFGPGVRY DEHTDDTTETQPLGYASGSYAWQLTDNAKFTQGVSVFGAEDTTLNSETALNVAINEHF GLKVGYNLTWNSQPPESAPEHTDRRTTVTLGYKM" misc_feature 1406302..1407057 /gene="ydiY" /locus_tag="STM1327" /note="Putative salt-induced outer membrane protein YdiY [Cell wall/membrane/envelope biogenesis]; Region: YdiY; COG3137" /db_xref="CDD:442371" gene complement(1407109..1408075) /locus_tag="STM1328" /db_xref="GeneID:1252846" CDS complement(1407109..1408068) /locus_tag="STM1328" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_460294.1" /db_xref="GeneID:1252846" /translation="MNKYSYCATMIAAILSTTTMANASSLAISVANDDAGIFQPSLNA LYGHPAADRGDYTAGLFLGYSHDLTDASQLSFHIAQDIYSPSGANKRKPEAVKGDRAF SAFLHTGLEWNSLATNWLRYRLGTDIGVIGPDAGGQEVQNRAHRIIGAEKYPAWQDQI ENRYGYTAKGMVSLTPAIDILGVNVGFYPEVSAVGGNLFQYLGYGATVALGNDKTFNS DNGFGLLSRRGLIHTQKEGLIYKVFAGVERREVDKNYTLQGKTLQTKMETVDINKTVD EYRVGATIGYSPVAFSLSLNKVTSEFRTGDDYSYINGDITFFF" misc_feature complement(1407112..1408050) /locus_tag="STM1328" /note="Uncharacterized conserved protein, DUF2219 family [Function unknown]; Region: COG3528" /db_xref="CDD:442750" regulatory complement(1408070..1408075) /regulatory_class="ribosome_binding_site" /locus_tag="STM1328" /note="putative RBS for STM1328; RegulonDB:STMS1H001575" gene 1408204..1408525 /locus_tag="STM1329" /db_xref="GeneID:1252847" regulatory 1408204..1408209 /regulatory_class="ribosome_binding_site" /locus_tag="STM1329" /note="putative RBS for STM1329; RegulonDB:STMS1H001576" CDS 1408211..1408525 /locus_tag="STM1329" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460295.1" /db_xref="GeneID:1252847" /translation="MLKNGVEKHASDIIEYPFFIRYLSARNYWLHDYAYNTMFFGINM NITLYSFELIFYDGFDVYLLLIFTVIVLSLMMRISNGCQGNITKLLLSELLGQLLLRK KK" gene 1408515..1409376 /locus_tag="STM1330" /db_xref="GeneID:1252848" regulatory 1408515..1408520 /regulatory_class="ribosome_binding_site" /locus_tag="STM1329" /note="putative RBS for STM1330; RegulonDB:STMS1H001577" CDS 1408522..1409376 /locus_tag="STM1330" /codon_start=1 /transl_table=11 /product="putative DNA/RNA non-specific endonuclease" /protein_id="NP_460296.1" /db_xref="GeneID:1252848" /translation="MNKTINLLKLLPVVLLSACTTSYPPQDTTSAPELPHRNVLVQQP DNCSVGCPQGGSQQTIYRHVYTLNNNSVTKFANWVAYSVTKTSQASGRPRNWAQDPDL PPSDTLAPSAYKNAHTLLKVDRGHQAPLAGLGGVSDWPSLNYLSNITPQKSALNQGAW AALENRVRELAKQADVSVVHVVTGPLFERHIATLPEDATVEIPSGYWKVLFTGMAPSK SEGNYAAFIMDQNTPRSANFCDYQVTVEAIEHKAKPVLTLWSALPEAVASEVKTTKGS LAQKLGCR" misc_feature 1408648..1409346 /locus_tag="STM1330" /note="DNA/RNA endonuclease G, NUC1 [Nucleotide transport and metabolism]; Region: NUC1; COG1864" /db_xref="CDD:441469" gene 1409545..1409755 /locus_tag="STM1331" /db_xref="GeneID:1252849" regulatory 1409545..1409550 /regulatory_class="ribosome_binding_site" /locus_tag="STM1331" /note="putative RBS for STM1331; RegulonDB:STMS1H001578" CDS 1409549..1409755 /locus_tag="STM1331" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_447756.1" /db_xref="GeneID:1252849" /translation="MDTQLTVNKFIFSLYVILRNKYNPSFTSILVRLNLFHQFRVITG NSGYICFIPFYIDPFRAVRCTYLI" gene complement(1410078..1411306) /gene="rfc" /locus_tag="STM1332" /db_xref="GeneID:1252850" CDS complement(1410078..1411301) /gene="rfc" /locus_tag="STM1332" /note="O-antigen polymerase (SW:RFC_SALTY)" /codon_start=1 /transl_table=11 /product="O-antigen polymerase" /protein_id="NP_460298.1" /db_xref="GeneID:1252850" /translation="MLIISYIALCLLFIVYLYTLSVRIEGKIINVMVPYLIITVPTLY VFEGIFVYLSEVQNYTVEYLFFYTCYITYIASFVISYLYTQRKPIYNKSNTKNKPRYV FTSLLFTFLAFIIYLPVLMEFREYILSPRRIYELTRTGYGIYFYPSLMFSLVASICAF FTYKKSKLFCISIVLFNCILIFLHGNKGPIFSIFIAFILYLSYIENKKIKFMFLVKSF AVIAVIVTAFFAYTFTDGNPIENMANYSDYTRNAVLVASSNFDFMYGKLLMESEVYSR IPRAIWPDKPEDFGALYLAKVFFPDAFYRNQGAPAFGYGELYADFGLFTPVWLVISGV FKGVLAKYFSNKTQETKSAHYFIMFLFCIGISVIPVSMGWLFPEHLMIAFMVYIASSF VFSEHIRFVLLRNNK" misc_feature complement(1410138..1411223) /gene="rfc" /locus_tag="STM1332" /note="oligosaccharide repeat unit polymerase; Region: glyco_rpt_poly; TIGR04370" /db_xref="CDD:275163" regulatory complement(1411301..1411306) /regulatory_class="ribosome_binding_site" /gene="rfc" /locus_tag="STM1332" /note="putative RBS for rfc; RegulonDB:STMS1H001579" gene 1412182..1414121 /gene="thrS" /locus_tag="STM1333" /db_xref="GeneID:1252851" regulatory 1412182..1412187 /regulatory_class="ribosome_binding_site" /gene="thrS" /locus_tag="STM1333" /note="putative RBS for thrS; RegulonDB:STMS1H001580" CDS 1412193..1414121 /gene="thrS" /locus_tag="STM1333" /EC_number="6.1.1.3" /note="similar to E. coli threonine tRNA synthetase (AAC74789.1); Blastp hit to AAC74789.1 (642 aa), 96% identity in aa 1 - 642" /codon_start=1 /transl_table=11 /product="threonine tRNA synthetase" /protein_id="NP_460299.1" /db_xref="GeneID:1252851" /translation="MPVITLPDGSQRHYDHPVSPMDVALDIGPGLAKATIAGRVNGEL VDASDLIENDATLSIITAKDEEGLEIIRHSCAHLLGHAIKQLWPHTKMAIGPVVDNGF YYDVDLDRTLTQEDVEALEKRMHELAEKNYDVIKKKVSWHDARETFVKRGETYKVAIL DENIAHDDKPGLYHHEEYVDMCRGPHVPNMRFCHHFKLMKTAGAYWRGDSNNKMLQRI YGTAWADKKALNAYLQRLEEAAKRDHRKIGKQLDLYHMQEEAPGMVFWHNDGWTIFRE LEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNC PGHVQIFNQGLKSYRDLPLRMAEFGSCHRNEPSGALHGLMRVRGFTQDDAHIFCTEEQ IRDEVNACIRMVYDMYSTFGFEKIVVKLSTRPDKRIGSDEMWDRAEADLAVALEENNI PFEYQLGEGAFYGPKIEFTLYDCLDRAWQCGTVQLDFSLPSRLSASYVGEDNERKVPV MIHRAILGSMERFIGILTEEFAGFFPTWLAPVQVVVMNITDSQSEYVNELTQKLQNAG IRVKADLRNEKIGFKIREHTLRRVPYMLVCGDKEVEAGKVAVRTRRGKDLGSLDVNDV IEKLQQEIRSRSLQQLEE" misc_feature 1412193..1414109 /gene="thrS" /locus_tag="STM1333" /note="Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: ThrS; COG0441" /db_xref="CDD:440210" gene 1414213..1414667 /gene="infC" /locus_tag="STM1334" /db_xref="GeneID:1252852" regulatory 1414213..1414218 /regulatory_class="ribosome_binding_site" /gene="infC" /locus_tag="STM1334" /note="putative RBS for infC; RegulonDB:STMS1H001581" CDS 1414233..1414667 /gene="infC" /locus_tag="STM1334" /note="translation initiation factor IF-3. (SW:IF3_SALTY)" /codon_start=1 /transl_table=11 /product="protein chain initiation factor IF-3" /protein_id="NP_460300.3" /db_xref="GeneID:1252852" /translation="MSLREALEKAEEAGVDLVEISPNAEPPVCRIMDYGKFLYEKSKS SKEQKKKQKVIQVKEIKFRPGTDEGDYQVKLRSLIRFLEEGDKAKITLRFRGREMAHQ QIGMEVLNRVKDDLQELAVVESFPTKIEGRQMIMVLAPKKKQ" misc_feature 1414233..1414661 /gene="infC" /locus_tag="STM1334" /note="Translation initiation factor IF-3 [Translation, ribosomal structure and biogenesis]; Region: InfC; COG0290" /db_xref="CDD:440059" gene 1414748..1414960 /gene="rpmI" /locus_tag="STM1335" /db_xref="GeneID:1252853" regulatory 1414748..1414753 /regulatory_class="ribosome_binding_site" /gene="rpmI" /locus_tag="STM1335" /note="putative RBS for rpmI; RegulonDB:STMS1H001582" CDS 1414763..1414960 /gene="rpmI" /locus_tag="STM1335" /note="similar to E. coli 50S ribosomal subunit protein A (AAC74787.1); Blastp hit to AAC74787.1 (65 aa), 100% identity in aa 1 - 65" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L35" /protein_id="NP_460301.1" /db_xref="GeneID:1252853" /translation="MPKIKTVRGAAKRFKKTGKGGFKHKHANLRHILTKKATKRKRHL RPKAMVSKGDLGLVIACLPYA" misc_feature 1414763..1414954 /gene="rpmI" /locus_tag="STM1335" /note="Ribosomal protein L35 [Translation, ribosomal structure and biogenesis]; Region: RpmI; COG0291" /db_xref="CDD:440060" gene 1414998..1415367 /gene="rplT" /locus_tag="STM1336" /db_xref="GeneID:1252854" regulatory 1414998..1415003 /regulatory_class="ribosome_binding_site" /gene="rplT" /locus_tag="STM1336" /note="putative RBS for rplT; RegulonDB:STMS1H001583" CDS 1415011..1415367 /gene="rplT" /locus_tag="STM1336" /note="similar to E. coli 50S ribosomal subunit protein L20, and regulator (AAC74786.1); Blastp hit to AAC74786.1 (118 aa), 100% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L20" /protein_id="NP_460302.1" /db_xref="GeneID:1252854" /translation="MARVKRGVIARARHKKILKQAKGYYGARSRVYRVAFQAVIKAGQ YAYRDRRQRKRQFRQLWIARINAAARQNGISYSKFINGLKKASVEIDRKILADIAVFD KVAFTALVEKAKAALA" misc_feature 1415014..1415355 /gene="rplT" /locus_tag="STM1336" /note="50S ribosomal protein L20; Provisional; Region: rplT; PRK05185" /db_xref="CDD:179959" misc_feature order(1415026..1415043,1415047..1415058,1415071..1415094, 1415098..1415109,1415116..1415121,1415131..1415136, 1415143..1415187,1415191..1415199,1415206..1415208, 1415218..1415220,1415236..1415241,1415248..1415253, 1415260..1415262,1415284..1415292) /gene="rplT" /locus_tag="STM1336" /note="23S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:197305" misc_feature order(1415116..1415118,1415128..1415130,1415137..1415142, 1415146..1415151,1415158..1415160,1415275..1415286, 1415293..1415295,1415311..1415316,1415332..1415337) /gene="rplT" /locus_tag="STM1336" /note="L21 binding site [polypeptide binding]; other site" /db_xref="CDD:197305" misc_feature order(1415179..1415181,1415188..1415193,1415200..1415202, 1415209..1415214,1415218..1415220,1415290..1415292, 1415299..1415301,1415308..1415310) /gene="rplT" /locus_tag="STM1336" /note="L13 binding site [polypeptide binding]; other site" /db_xref="CDD:197305" gene 1415659..1416652 /gene="pheS" /locus_tag="STM1337" /db_xref="GeneID:1252855" regulatory 1415659..1415664 /regulatory_class="ribosome_binding_site" /gene="pheS" /locus_tag="STM1337" /note="putative RBS for pheS; RegulonDB:STMS1H001584" CDS 1415669..1416652 /gene="pheS" /locus_tag="STM1337" /EC_number="6.1.1.20" /note="similar to E. coli phenylalanine tRNA synthetase, alpha-subunit (AAC74784.1); Blastp hit to AAC74784.1 (327 aa), 97% identity in aa 1 - 327" /codon_start=1 /transl_table=11 /product="phenylalanine tRNA synthetase, alpha-subunit" /protein_id="NP_460303.1" /db_xref="GeneID:1252855" /translation="MSHLAELVANAAAAINQASDVAALDNVRVEYLGKKGHLTLQMTT LRDLPPEERPAAGAVINAAKEQVQQALNARKAELESAALNARLAAETIDISLPGRRIE NGGLHPVTRTIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWF DATRLLRTQTSGVQIRTMKAQQPPIRIIAPGRVYRNDYDQTHTPMFHQMEGLIVDTNI SFTNLKGTLHDFLRNFFEEDLQIRFRPSYFPFTEPSAEVDVMGKNGKWLEVLGCGMVH PNVLRNVGIDPEIYSGFAFGMGMERLTMLRYGVTDLRSFFENDLRFLKQFK" misc_feature 1415669..1416649 /gene="pheS" /locus_tag="STM1337" /note="Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]; Region: PheS; COG0016" /db_xref="CDD:439787" gene 1416656..1419055 /gene="pheT" /locus_tag="STM1338" /db_xref="GeneID:1252856" regulatory 1416656..1416661 /regulatory_class="ribosome_binding_site" /gene="pheT" /locus_tag="STM1338" /note="putative RBS for pheT; RegulonDB:STMS1H001585" CDS 1416668..1419055 /gene="pheT" /locus_tag="STM1338" /EC_number="6.1.1.20" /note="phenylalanyl-tRNA synthetase beta chain. (SW:SYFB_SALTY)" /codon_start=1 /transl_table=11 /product="phenylalanine tRNA synthetase, beta-subunit" /protein_id="NP_460304.1" /db_xref="GeneID:1252856" /translation="MKFSELWLREWVNPAIDSDALANQITMAGLEVDGVEPVAGSFNG VVVGEVVECAQHPNADKLRVTKVNVGGERLLDIVCGAPNCRQGLKVAVATIGAILPGD FKIKAAKLRGEPSEGMLCSFSELGISDDHSGIIELPADAPLGTDIREYLKLDDNTIEI SVTPNRADCLGIIGVARDVAVLNKAPLQEPEMAPVTATISDTLPITVEAADACPRYLG RVVKGINVNAPTPLWMKEKLRRCGIRSIDAVVDVTNYVLLELGQPMHAFDKDRIDGGI VVRMAKEGETVVLLDGSEATLNADTLVIADHHKALGIAGIFGGEHSGVNGETQNVLLE CAYFNPLSITGRARRHGLHTDASHRYERGVDPALQYKAIERATRLLLDICGGDAGPII DVSNEATLPKRATITLRRSKLDRLIGHHIADEQVSDILRRLGCEVTEGQDEWKAVAPT WRFDMEIEEDLVEEVARVYGYNNIPDEPIQAGLIMGTHREADLSLKRVKTMLNDKGYQ EVITYSFVDPKVQQLIHPGAEALLLPNPISVEMSAMRLSLWSGLLATVVYNQNRQQNR VRIFETGLRFVPDTQANLGIRQDLMLAGVICGNRYDEHWNLAKETVDFYDLKGDLEAV LDLTGKLGDIQFKAEMNPALHPGQSAAIYLKDERIGFIGVVHPELERKLDLNGRTLVF ELEWNKLADRIVPQAREISRFPANRRDIAVVVAENVPAADILSECKKVGVNQVVGVNL FDVYRGKGVAEGYKSLAISLILQDTNRTLEEEEIAATVAKCVEALKERFQASLRD" misc_feature 1416668..1419052 /gene="pheT" /locus_tag="STM1338" /note="phenylalanyl-tRNA synthetase subunit beta; Reviewed; Region: pheT; PRK00629" /db_xref="CDD:234804" gene 1418921..1419359 /gene="himA" /locus_tag="STM1339" /db_xref="GeneID:1252857" regulatory 1418921..1418929 /regulatory_class="minus_35_signal" /gene="himA" /locus_tag="STM1339" /note="putative -35_signal for himA; RegulonDB:STMLTH004484" regulatory 1418945..1418953 /regulatory_class="minus_10_signal" /gene="himA" /locus_tag="STM1339" /note="putative -10_signal for himA; RegulonDB:STMLTH004484" regulatory 1419046..1419051 /regulatory_class="ribosome_binding_site" /gene="himA" /locus_tag="STM1339" /note="putative RBS for himA; RegulonDB:STMS1H001586" CDS 1419060..1419359 /gene="himA" /locus_tag="STM1339" /note="integration host factor alpha-subunit (IHF-alpha). (SW:IHFA_SALTY)" /codon_start=1 /transl_table=11 /product="integration host factor (IHF), alpha subunit" /protein_id="NP_460305.1" /db_xref="GeneID:1252857" /translation="MALTKAEMSEYLFDKLGLSKRDAKELVELFFEEIRRALENGEQV KLSGFGNFDLRDKNQRPGRNPKTGEDIPITARRVVTFRPGQKLKSRVENASPKEE" misc_feature 1419060..1419356 /gene="himA" /locus_tag="STM1339" /note="integration host factor subunit alpha; Reviewed; Region: ihfA; PRK00285" /db_xref="CDD:178961" misc_feature order(1419069..1419074,1419129..1419131,1419192..1419194, 1419198..1419206,1419210..1419212,1419222..1419224, 1419228..1419230,1419237..1419257,1419270..1419272, 1419276..1419278,1419285..1419287,1419291..1419293, 1419303..1419305,1419312..1419314,1419321..1419323) /gene="himA" /locus_tag="STM1339" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:259857" misc_feature order(1419081..1419083,1419090..1419092,1419132..1419134, 1419144..1419146,1419153..1419158,1419162..1419167, 1419183..1419194,1419198..1419200,1419285..1419290, 1419294..1419296,1419300..1419302,1419327..1419332) /gene="himA" /locus_tag="STM1339" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:259857" gene 1419553..1420542 /gene="btuC" /locus_tag="STM1340" /db_xref="GeneID:1252858" regulatory 1419553..1419558 /regulatory_class="ribosome_binding_site" /gene="btuC" /locus_tag="STM1340" /note="putative RBS for btuC; RegulonDB:STMS1H001587" CDS 1419562..1420542 /gene="btuC" /locus_tag="STM1340" /note="ABC superfamily (membrane); similar to E. coli vitamin B12 transport permease protein (AAC74781.1); Blastp hit to AAC74781.1 (326 aa), 91% identity in aa 1 - 326" /codon_start=1 /transl_table=11 /product="vitamin B12 transport protein" /protein_id="NP_460306.1" /db_xref="GeneID:1252858" /translation="MLTFARQQQRRNVRWLLSLSLLVLLATLLSLCAGEQWIAPGDWL SARGELFVWQIRLPRTLAVLLVGAALALSGAVMQALFENPLAEPGLLGVSNGAGVGLI AAVLLGQGQLPGWALGLCAIAGALIITLILLRFARRHLSTSRLLLAGVALGIICSALM TWAIYFSTSFDLRQLMYWMMGGFGGVDWQQSWLMIALIPVLIWICCQSQPLNMLALGE TSARQLGLPLWFWRNLLVVATGWMVGVSVAMAGAIGFIGLVIPHILRLCGLTDHRVLL PGCALAGAIALLLADVVARLALASAELPIGVVTATLGAPVFIWLLLKSAR" misc_feature 1419562..1420539 /gene="btuC" /locus_tag="STM1340" /note="vtamin B12-transporter permease; Provisional; Region: PRK03784" /db_xref="CDD:235159" misc_feature order(1419793..1419795,1419805..1419813,1420174..1420179, 1420183..1420191,1420195..1420200,1420204..1420221, 1420225..1420233,1420354..1420356,1420375..1420377) /gene="btuC" /locus_tag="STM1340" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119348" misc_feature order(1419808..1419810,1419814..1419816,1419829..1419831, 1419991..1419993,1419997..1420002,1420009..1420014, 1420021..1420026,1420033..1420035,1420042..1420047, 1420051..1420053,1420087..1420092,1420099..1420101, 1420324..1420326,1420480..1420482,1420489..1420494, 1420501..1420503,1420510..1420515,1420522..1420524) /gene="btuC" /locus_tag="STM1340" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(1420051..1420053,1420129..1420131,1420300..1420302, 1420312..1420314,1420444..1420446,1420471..1420473) /gene="btuC" /locus_tag="STM1340" /note="putative PBP binding regions [active]" /db_xref="CDD:119348" gene 1420622..1421185 /gene="btuE" /locus_tag="STM1341" /db_xref="GeneID:1252859" regulatory 1420622..1420627 /regulatory_class="ribosome_binding_site" /gene="btuE" /locus_tag="STM1341" /note="putative RBS for btuE; RegulonDB:STMS1H001588" CDS 1420634..1421185 /gene="btuE" /locus_tag="STM1341" /note="ABC superfamily (binding protein); similar to E. coli vitamin B12 transport (AAC74780.1); Blastp hit to AAC74780.1 (183 aa), 85% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="vitamin B12 transport protein" /protein_id="NP_460307.1" /db_xref="GeneID:1252859" /translation="MQNSLLNTHVTTIDGEVTTLEKYAGKVLLIVNVASRCGLTPQYE QLENIQKAWADQGFVVLGFPCNQFMGQEPGSEEEIKTYCASTWGVTFPMFSKIDVNGD ARHPLYQKLIAAAPTAVAPEKSGFYERMVSKGRTPLYPDDILWNFEKFLVGRDGQVVQ RFSPDMTPEDPIVMESIKIALAK" misc_feature 1420634..1421182 /gene="btuE" /locus_tag="STM1341" /note="putative glutathione peroxidase; Provisional; Region: btuE; PRK10606" /db_xref="CDD:182585" misc_feature order(1420742..1420744,1420844..1420846,1421066..1421068) /gene="btuE" /locus_tag="STM1341" /note="catalytic residues [active]" /db_xref="CDD:238207" misc_feature order(1420841..1420843,1420850..1420852,1420856..1420858, 1420865..1420867,1420874..1420876,1420886..1420888) /gene="btuE" /locus_tag="STM1341" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238207" gene 1421185..1421934 /gene="btuD" /locus_tag="STM1342" /db_xref="GeneID:1252860" CDS 1421185..1421934 /gene="btuD" /locus_tag="STM1342" /note="ABC superfamily (binding protein); similar to E. coli ATP-binding component of vitamin B12 transport system (AAC74779.1); Blastp hit to AAC74779.1 (249 aa), 80% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="vitamin B12 transport protein" /protein_id="NP_460308.1" /db_xref="GeneID:1252860" /translation="MSQLMQLKDVAESTRLGPLSGEVSAGEILHLVGPNGAGKSTLLA RMAGLTSGEGSIRFGGAPLEAWATATLAQHRAYLAQQQNPPFAMPVWHYLTLHQPDKT RTGQLNEVADMLGLGDKLGRSVNQLSGGEWQRVRLAAVVLQIHPDANPVGQLLLLDEP MNSLDVAQQNALDRVLHHLCQAGIAIVMSSHDLNHTLRHAHKAWLLKRGKLIACGRRE EVLTPSYLAQAYGLRFRRLDVEGHPMLISAT" misc_feature 1421197..1421928 /gene="btuD" /locus_tag="STM1342" /note="vitamin B12-transporter ATPase; Provisional; Region: PRK03695" /db_xref="CDD:235150" gene 1421996..1422475 /gene="nlpC" /locus_tag="STM1343" /db_xref="GeneID:1252861" regulatory 1421996..1422001 /regulatory_class="ribosome_binding_site" /gene="nlpC" /locus_tag="STM1343" /note="putative RBS for nlpC; RegulonDB:STMS1H001589" CDS 1422011..1422475 /gene="nlpC" /locus_tag="STM1343" /note="similar to E. coli lipoprotein (AAC74778.1); Blastp hit to AAC74778.1 (154 aa), 86% identity in aa 1 - 154" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_460309.1" /db_xref="GeneID:1252861" /translation="MRFWLLVITALFLAGCSTHRAPAPNARLSDSITVIAGLNDQLQS WRGTPYRYGGMSRRGVDCSGFVVVTMRDKFDLQLPRDTREQSKIGTRIDKDELLPGDL VFFKTGSGESGLHVGIYDTNNEFIHASTSRGVMRSSLDNVYWRKNFWQARRI" misc_feature <1422062..1422472 /gene="nlpC" /locus_tag="STM1343" /note="Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis]; Region: NlpC; COG0791" /db_xref="CDD:440554" gene 1422781..1423502 /gene="ydiV" /locus_tag="STM1344" /db_xref="GeneID:1252862" regulatory 1422781..1422786 /regulatory_class="ribosome_binding_site" /gene="ydiV" /locus_tag="STM1344" /note="putative RBS for ydiV; RegulonDB:STMS1H001590" CDS 1422789..1423502 /gene="ydiV" /locus_tag="STM1344" /note="similar to E. coli orf, hypothetical protein (AAC74777.1); Blastp hit to AAC74777.1 (237 aa), 52% identity in aa 5 - 237" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase domain 1" /protein_id="NP_460310.1" /db_xref="GeneID:1252862" /translation="MIASLDELYHSELFFLPVMDENARLVGLEIIATFAAEDGAVRMP TELVAPRLSVEEQYCLFVEKLALLETCQHFFIQHKLIAWLNLPPAISDLLLLDSELFS RAARFPFLELAINENYPGLNQGKNNETLANLAMHFPLMLANFGAGEASTKAIFDGLFK RVMLDKNFIQQRAEMISFEPFMHAIVAQISSSCESLMIAGIDTEAMFARAAPLGFSAF QGGLWPPVPVSQLIKLVQR" misc_feature 1422822..1423448 /gene="ydiV" /locus_tag="STM1344" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cl29561" /db_xref="CDD:453023" gene 1423553..1425006 /gene="ydiU" /locus_tag="STM1345" /db_xref="GeneID:1252863" regulatory 1423553..1423558 /regulatory_class="ribosome_binding_site" /gene="ydiU" /locus_tag="STM1345" /note="putative RBS for ydiU; RegulonDB:STMS1H001591" CDS 1423564..1425006 /gene="ydiU" /locus_tag="STM1345" /note="similar to E. coli orf, hypothetical protein (AAC74776.1); Blastp hit to AAC74776.1 (478 aa), 82% identity in aa 1 - 478" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460311.1" /db_xref="GeneID:1252863" /translation="MTLSFTARWRDELPATYTALLPTPLKNARLIWYNDELAQQLAIP ASLFDATNGAGVWGGETLLPGMSPVAQVYSGHQFGVWAGQLGDGRGILLGEQLLADGS TLDWHLKGAGLTPYSRMGDGRAVLRSTIRESLASEAMHYLGIPTTRALSIVTSDTPVQ RETQETGAMLMRLAQSHMRFGHFEHFYYRREPEKVQQLADFAIRHYWPQWQDVPEKYA LWFEEVAARTGRLIAEWQTVGFAHGVMNTDNMSILGLTIDYGPFGFLDDYDPGFIGNH SDHQGRYRFDNQPSVALWNLQRLAQTLTPFIEIDALNRALDRYQDALLTHYGQRMRQK LGFFTEQKDDNVLLNELFSLMAREGSDYTRTFRMLSHTEQQSASSPLRDTFIDRAAFD AWFDRYRARLRTEAVDDALRQQQMQRVNPAIVLRNWLAQRAIDAAEQGDMAELHRLHE VLRQPFTDRDDDYARRPPEWGKRLEVSCSS" misc_feature 1423564..1425003 /gene="ydiU" /locus_tag="STM1345" /note="Protein adenylyltransferase (AMPylase) SelO/YdiU (selenoprotein O) [Posttranslational modification, protein turnover, chaperones]; Region: SelO; cl46173" /db_xref="CDD:480513" gene complement(1425041..1425232) /gene="ydiE" /locus_tag="STM1346" /db_xref="GeneID:1252864" CDS complement(1425041..1425232) /gene="ydiE" /locus_tag="STM1346" /note="similar to E. coli orf, hypothetical protein (AAC74775.1); Blastp hit to AAC74775.1 (63 aa), 60% identity in aa 1 - 63" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460312.1" /db_xref="GeneID:1252864" /translation="MSRMDNTELPHPKEIDNETLLPAAERRVNSQALLGPDGKVIIDH NGQEYLLRKTQAGKLLLTK" misc_feature complement(1425044..1425211) /gene="ydiE" /locus_tag="STM1346" /note="hypothetical protein; Provisional; Region: PRK10183" /db_xref="CDD:182290" gene complement(1425389..1426471) /gene="aroH" /locus_tag="STM1347" /db_xref="GeneID:1252865" CDS complement(1425389..1426435) /gene="aroH" /locus_tag="STM1347" /EC_number="2.5.1.54" /note="tryptophan repressible; similar to E. coli 3-deoxy-D-arabinoheptulosonate-7-phosphate synthase (DAHP synthetase, tryptophan repressible) (AAC74774.1); Blastp hit to AAC74774.1 (348 aa), 90% identity in aa 1 - 348" /codon_start=1 /transl_table=11 /product="3-deoxy-D-arabinoheptulosonate-7-phosphate synthase" /protein_id="NP_460313.1" /db_xref="GeneID:1252865" /translation="MNRTDELRTARIDSLVTPTELAQRYPVSSSVASHVTDSRRRIEK ILNGEDPRLLVVIGPCSIHDLNAAMEYATQLQAQRQKHQARLEIVMRTYFEKPRTVVG WKGLISDPDLNGSYRVNYGLELARRLLLQVNELGVPTATEFLDMVTGQFIADLISWGA IGARTTESQIHREMASALSCPVGFKNGTDGNTRIAVDAIRASRASHMFLSPDKDGQMT IYQTSGNPYGHIIMRGGKKPNYHAEDIAAACDTLHEFDLPEHLVVDFSHGNCQKQHRR QLEVCDDICQQIRNGSTAIAGIMAESFLREGTQKIISGQPLIYGQSITDPCLNWEDTE VLLEKLAAAVDSRF" misc_feature complement(1425392..1426435) /gene="aroH" /locus_tag="STM1347" /note="Trp-sensitive 3-deoxy-7-phosphoheptulonate synthase AroH; Region: PRK12756" /db_xref="CDD:183726" regulatory complement(1426447..1426455) /regulatory_class="minus_10_signal" /gene="aroH" /locus_tag="STM1347" /note="putative -10_signal for aroH; RegulonDB:STMLTH004485" regulatory complement(1426463..1426471) /regulatory_class="minus_35_signal" /gene="aroH" /locus_tag="STM1347" /note="putative -35_signal for aroH; RegulonDB:STMLTH004485" protein_bind complement(1426581..1426587) /note="putative binding site for TrpR, RegulonDB: STMS1H000376" /bound_moiety="TrpR" gene complement(1426591..1427437) /gene="ydiA" /locus_tag="STM1348" /db_xref="GeneID:1252866" CDS complement(1426591..1427424) /gene="ydiA" /locus_tag="STM1348" /note="similar to E. coli orf, hypothetical protein (AAC74773.1); Blastp hit to AAC74773.1 (277 aa), 97% identity in aa 1 - 277" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460314.1" /db_xref="GeneID:1252866" /translation="MDNVVDRHVFYISDGTAITAEVLGHAVMSQFPVTISSITLPFVE NESRARAVKDQIDAIYQQTGVRPLVFYSIVLPEIRAIILQSEGFCQDIVQALVAPLQQ EMKLDPTPIAHRTHGLNPGNLNKYDARIAAIDYTLAHDDGISLRNLDQAQVILLGVSR CGKTPTSLYLAMQFGIRAANYPFIADDMDNLTLPTSLKPLQHKLFGLTIDPERLAAIR EERRENSRYASLRQCRMEVAEVEALYRKNQIPCLNSTNYSVEEIATKILDIMGLNRRM Y" misc_feature complement(1426594..1427406) /gene="ydiA" /locus_tag="STM1348" /note="pyruvate, phosphate dikinase/phosphoenolpyruvate synthase regulator; Region: PRK05339" /db_xref="CDD:235419" regulatory complement(1427432..1427437) /regulatory_class="ribosome_binding_site" /gene="ydiA" /locus_tag="STM1348" /note="putative RBS for ydiA; RegulonDB:STMS1H001592" gene 1427610..1430139 /gene="pps" /locus_tag="STM1349" /db_xref="GeneID:1252867" regulatory 1427610..1427618 /regulatory_class="minus_35_signal" /gene="pps" /locus_tag="STM1349" /note="putative -35_signal for pps; RegulonDB:STMLTH004486" regulatory 1427636..1427644 /regulatory_class="minus_10_signal" /gene="pps" /locus_tag="STM1349" /note="putative -10_signal for pps; RegulonDB:STMLTH004486" regulatory 1427749..1427754 /regulatory_class="ribosome_binding_site" /gene="pps" /locus_tag="STM1349" /note="putative RBS for pps; RegulonDB:STMS1H001593" CDS 1427761..1430139 /gene="pps" /locus_tag="STM1349" /EC_number="2.7.9.2" /note="similar to E. coli phosphoenolpyruvate synthase (AAC74772.1); Blastp hit to AAC74772.1 (792 aa), 96% identity in aa 1 - 792" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate synthase" /protein_id="NP_460315.1" /db_xref="GeneID:1252867" /translation="MSNNGSSPLVLWYNQLGMNDVDRVGGKNASLGEMITNLSGMGVS VPNGFATTADAFNQFLDQSGVNQRIYELLDKTDIDDVSQLAKAGAQIRQWIIDTPFQP ELENAIRDAYAQLSSDDENASFAVRSSATAEDMPDASFAGQQETFLNVQGFDAVLVAV KHVFASLFNDRAISYRVHQGYDHRGVALSAGVQRMVRSDLASSGVMFSIDTESGFDQV VFITSAWGLGEMVVQGAVNPDEFYVHKPTLAAGRPAIVRRTMGSKKIRMVYAATQEHG KQVKIEDVPQEQRDIFSLTNEEVQELAKQAVQIEQHYGRPMDIEWAKDGHTGKLFIVQ ARPETVRSRGQVMERYTLHAQGKIIAEGRAIGHRIGAGTVKVIHDIGEMNRIEPGDVL VTDMTDPDWEPIMKKAAAIVTNRGGRTCHAAIIARELGIPAVVGCGDATERMKDGEKV TVSCAEGDTGYVYADMLDFSVKSSSVDTMPELPLKVMMNVGNPDRAFDFACLPNEGVG LARLEFIINRMIGVHPRALLEFDDQDAALQNDIREMMKGFDSPREFYVGRLTEGIATL GAAFYPKRVIVRLSDFKSNEYANLVGGERYEPHEENPMLGFRGAGRYVAESFRDCFAL ECEAVKRVRNDMGLTNVEIMIPFVRTVDQAKAVIEELARQGLKRGENGLKIIMMCEIP SNALLAEQFLEYFDGFSIGSNDMTQLALGLDRDSGVVSELFDERNDAVKALLSMAIRA AKKQGKYVGICGQGPSDHEDFAAWLMEEGIDSLSLNPDTVVQTWLSLAELKK" misc_feature 1427776..1430136 /gene="pps" /locus_tag="STM1349" /note="phosphoenolpyruvate synthase; Validated; Region: PRK06464" /db_xref="CDD:235809" gene complement(1430181..1431833) /gene="ydiD" /locus_tag="STM1350" /db_xref="GeneID:1252868" CDS complement(1430181..1431821) /gene="ydiD" /locus_tag="STM1350" /note="similar to E. coli putative ligase/synthetase (AAC74771.1); Blastp hit to AAC74771.1 (566 aa), 82% identity in aa 19 - 560" /codon_start=1 /transl_table=11 /product="plant pathogenicity factor-like protein" /protein_id="NP_460316.1" /db_xref="GeneID:1252868" /translation="MSVTLTFDAARRKTYRESGYWGDASLGDYWRQTARAVPDKIAVV DNHGASWTYAALDYAASRLANWLLSQGIQPGDRVAFQLPGWCEFTLIYLACLKTGAVS VPLLPAWREAELVWVLNKCQAKIFFAPTVFKQNRPVDLILPLQNQLRHLTHIVGVDKL APATTALALSQIIDRSEPLQSDINIHGDELAAVLFTSGTEGMPKGVMLTHNNILASER AYCARLNLTWQDVFLMPAPLGHATGFLHGVTAPFLIGARSVLLDIFTPEACLTLLAQQ RCTCMSGATPFIYDLLCAIEQQPADLSSLRFFLCGGTTIPKKVARDCQQRGIKLLSIY GSTESSPHSMVNLGDSTSRMMNTDGYAATGVEIKIVDEDRNTLPAGHEGEEASRGPNV FMGYLDEPELTARALDNEGWYYSGDLCRMDEDGYIKITGRKKDIIIRGGENISSREVE DILLQHPRIHDACVVAMPDERLGERSCAYVVLKPPHLSLTLEEVIAFFSRKRVAKYKY PERIVIVEKLPRTASGKVQKFLLRQDIIERLRQEHTAV" misc_feature complement(1430184..1431818) /gene="ydiD" /locus_tag="STM1350" /note="medium-chain fatty-acid--CoA ligase; Region: PRK06087" /db_xref="CDD:180393" misc_feature complement(order(1431210..1431215,1431219..1431236, 1431243..1431245)) /gene="ydiD" /locus_tag="STM1350" /note="acyl-activating enzyme (AAE) consensus motif; other site" /db_xref="CDD:341229" misc_feature complement(order(1430247..1430249,1430493..1430495, 1430526..1430528,1430535..1430537,1430571..1430573, 1430811..1430828,1430886..1430891,1431234..1431236)) /gene="ydiD" /locus_tag="STM1350" /note="putative AMP binding site [chemical binding]; other site" /db_xref="CDD:341229" misc_feature complement(order(1430304..1430306,1430493..1430504, 1430526..1430528,1430535..1430537,1430571..1430573, 1430811..1430828,1430886..1430891,1430952..1430954, 1430961..1430966,1430970..1430972,1431111..1431116, 1431234..1431236)) /gene="ydiD" /locus_tag="STM1350" /note="putative active site [active]" /db_xref="CDD:341229" misc_feature complement(order(1430304..1430306,1430325..1430327, 1430496..1430504,1430889..1430891,1430952..1430954, 1430961..1430966,1431114..1431116)) /gene="ydiD" /locus_tag="STM1350" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:341229" regulatory complement(1431828..1431833) /regulatory_class="ribosome_binding_site" /gene="ydiD" /locus_tag="STM1350" /note="putative RBS for ydiD; RegulonDB:STMS1H001594" gene complement(1431911..1432220) /gene="ydiT" /locus_tag="STM1351" /db_xref="GeneID:1252869" CDS complement(1431911..1432204) /gene="ydiT" /locus_tag="STM1351" /note="similar to E. coli orf, hypothetical protein (AAC74770.1); Blastp hit to AAC74770.1 (97 aa), 80% identity in aa 1 - 97" /codon_start=1 /transl_table=11 /product="putative ferredoxin" /protein_id="NP_460317.1" /db_xref="GeneID:1252869" /translation="MSSDNKVNVDVKLGVNKFYVDEGHPHIILRSSPDMQEFNKLIKA CPAGLYKLDDAGNIHFDSAGCLECGTCRVLCGNTLLEKWEYPAGTFGVEFRYG" misc_feature complement(1431914..1432186) /gene="ydiT" /locus_tag="STM1351" /note="4Fe-4S dicluster domain; Region: Fer4_8; cl19102" /db_xref="CDD:473136" gene complement(1432201..1433501) /gene="ydiS" /locus_tag="STM1352" /db_xref="GeneID:1252870" CDS complement(1432201..1433487) /gene="ydiS" /locus_tag="STM1352" /EC_number="1.5.5.-" /note="similar to E. coli flavoprotein; probably electron transport (AAC74769.1); Blastp hit to AAC74769.1 (429 aa), 80% identity in aa 1 - 429" /codon_start=1 /transl_table=11 /product="flavoprotein" /protein_id="NP_460318.1" /db_xref="GeneID:1252870" /translation="MSDDKFDAIVVGAGVAGTVAAYVMAKAGLDVLVIERGNSAGSKN MTGGRLYAHSIESIMPGFATSAPIERVVTREKISFLTEESAVTLDFHRAPPTPPLTSY TVLRNKLDPWLMAQAEQAGAQFIPGVRVDALVREGNRVTGVQAGDDILDANIVILADG VNSMLGRSLDMVPVSSAHHYAVGVKELIGLSPALIEERFNLASHEGAAWLFAGAPSNG LMGGGFLYTNRDSVSLGLVCGLGDIAHATKSVPQMLEDFKQHPAIRPLIQGGTLLEYS AHMVPEGGIAMMPELANDGVMIVGDAAGLCLNLGYTVRGMDLAIASAQAAAQTAIDAK ARQDFSAASLAGYKRALEKNGVLRDMRHFRKLPGLMENPRLFTEYPRMAANIVGDLFT VDGGPVPPLRKTILSHAKKIGLVNLLKDGIKGATAL" misc_feature complement(1432204..1433487) /gene="ydiS" /locus_tag="STM1352" /note="oxidoreductase; Provisional; Region: PRK10015" /db_xref="CDD:182194" regulatory complement(1432215..1432220) /regulatory_class="ribosome_binding_site" /gene="ydiT" /locus_tag="STM1351" /note="putative RBS for ydiT; RegulonDB:STMS1H001595" regulatory complement(1433496..1433501) /regulatory_class="ribosome_binding_site" /gene="ydiS" /locus_tag="STM1352" /note="putative RBS for ydiS; RegulonDB:STMS1H001596" gene complement(1433544..1434495) /gene="ydiR" /locus_tag="STM1353" /db_xref="GeneID:1252871" CDS complement(1433544..1434479) /gene="ydiR" /locus_tag="STM1353" /note="similar to E. coli putative flavoprotein (AAC74768.1); Blastp hit to AAC74768.1 (312 aa), 72% identity in aa 1 - 312" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein" /protein_id="NP_460319.1" /db_xref="GeneID:1252871" /translation="MNHLANVWVFSDNVERYAELMTGARQWGEKVYAIVQGNTDIDYV KALGADEIVILESHTDLQRVENYAETLASLLGDQNGLLLMAATKRCKALGARLSIQLD AVMVNDATSIDLLDGTLHAEHRMYGGLAFGKEKLNSPQAIITLAPGVLEPAAPLPGHT CPQTTLAYIAPRHEVLCQQRRAKSLSSVDLSKAKRVIGVGRGLAAQSDLDMVHKLATV LGAEVGCSRPIAEGENWMERERYIGVSGVLLKSDLYLTLGISGQIQHMVGGNGAKIIV AINKDKNAPIFNYADYGLVGDIYKVVPALIDQLSR" misc_feature complement(1433547..1434479) /gene="ydiR" /locus_tag="STM1353" /note="electron transfer flavoprotein subunit alpha; Region: PRK11916" /db_xref="CDD:183380" regulatory complement(1434490..1434495) /regulatory_class="ribosome_binding_site" /gene="ydiR" /locus_tag="STM1353" /note="putative RBS for ydiR; RegulonDB:STMS1H001597" gene complement(1434501..1435276) /gene="ydiQ" /locus_tag="STM1354" /db_xref="GeneID:1252872" CDS complement(1434501..1435265) /gene="ydiQ" /locus_tag="STM1354" /note="similar to E. coli putative transport protein (AAC74767.1); Blastp hit to AAC74767.1 (254 aa), 79% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="putative electron transfer flavoprotein" /protein_id="NP_460320.1" /db_xref="GeneID:1252872" /translation="MKIITCFKLVPEEQDITVTPEHSLNFDRAEAKISQFDLNAIEAA AQLAGGGDEIAALTVGGSLLQNSKVRKDVLSRGPDALFMVQDAQMEHALPKETALALA SAAEKIGFDLLLFGEGSGDIYAQQVGLLTGELLKLPVINAVSHIQRDGDKIIVERTLE EDVEIIELTLPAVLCVTSDINVPRIPSMKAILGAGKKAVTSWLASDIHWTPTTPMAEL VAISVPPQTERKHIILDNDSPEAITALADHLKKSLN" misc_feature complement(1434504..1435265) /gene="ydiQ" /locus_tag="STM1354" /note="electron transfer flavoprotein; Region: PRK12342" /db_xref="CDD:183455" regulatory complement(1435271..1435276) /regulatory_class="ribosome_binding_site" /gene="ydiQ" /locus_tag="STM1354" /note="putative RBS for ydiQ; RegulonDB:STMS1H001598" gene 1435719..1436618 /gene="ydiP" /locus_tag="STM1355" /db_xref="GeneID:1252873" regulatory 1435719..1435724 /regulatory_class="ribosome_binding_site" /gene="ydiP" /locus_tag="STM1355" /note="putative RBS for ydiP; RegulonDB:STMS1H001599" CDS 1435728..1436618 /gene="ydiP" /locus_tag="STM1355" /note="similar to E. coli putative ARAC-type regulatory protein (AAC74766.1); Blastp hit to AAC74766.1 (303 aa), 80% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="putative transcription regulator, AraC family" /protein_id="NP_460321.1" /db_xref="GeneID:1252873" /translation="MYQRCFDSAAETIFEQDKTPRFSRFVISDDPNWESGHHMHDNET ELIYVKKGIARLIIDSSLYVAHADDIVVVERGRLHAVASDSNSPATTYTCALYGFCFP GWEENQLLQSHSCPVVSVVQGKGVIKSIFNELSVLLPQGKNVLASSVYDAFAYTLTAL YYENFKNAYRSEQGYIKKDVLIKDVLVYLNNNYREKITLDQLSKKFRASVSYICHEFA KEYHISPINYVIQRRMTEAKFALTNTESPLAEISWRVGYENVDHFAKLFMRHVGCSPN DYRKQFKNSLVEQAYLLPNT" misc_feature 1435800..1435994 /gene="ydiP" /locus_tag="STM1355" /note="Cupin domain; Region: Cupin_2; pfam07883" /db_xref="CDD:462300" misc_feature 1436313..1436564 /gene="ydiP" /locus_tag="STM1355" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:197666" gene complement(1436694..1437858) /gene="ydiO" /locus_tag="STM1356" /db_xref="GeneID:1252874" CDS complement(1436694..1437845) /gene="ydiO" /locus_tag="STM1356" /note="similar to E. coli putative oxidoreductase (AAC74765.1); Blastp hit to AAC74765.1 (401 aa), 95% identity in aa 19 - 401" /codon_start=1 /transl_table=11 /product="putative acyl-CoA dehydrogenase" /protein_id="NP_460322.1" /db_xref="GeneID:1252874" /translation="MDFSLTEEQELLLASIRELITSNFPEEYFRTCDQTGTYPKEFMQ ALAENGISMLGVPEEFGGIPADYVTQMLALMEISKCGAPAFLITNGQCIHSMRRFGSA EQLRKTAESTLATGDPAYALALTEPGAGSDNNSATTTWTRKNGKVYLNGQKTFITGAK EYPYMLVLARDTEPKDPKKAFTLWWVDSNKPGIKINPLHKIGWHMLSTCEVYLDNVEV DESDRVGEEGMGFLNVMYNFEMERLINAARSTGFAECAFEDAARYANQRIAFGKPIGH NQMIQEKLALMAIKIENMRNMVLKVAWQADREESLRTSAALAKLYCARTAMEVIDDAI QIMGGLGYTDEARVSRFWRDVRCERIGGGTDEIMIYVAGRQILKDYQNK" misc_feature complement(1436703..1437845) /gene="ydiO" /locus_tag="STM1356" /note="acyl-CoA dehydrogenase; Region: PRK12341" /db_xref="CDD:183454" regulatory complement(1437853..1437858) /regulatory_class="ribosome_binding_site" /gene="ydiO" /locus_tag="STM1356" /note="putative RBS for ydiO; RegulonDB:STMS1H001600" gene complement(1437859..1439412) /gene="ydiF" /locus_tag="STM1357" /db_xref="GeneID:1252875" CDS complement(1437859..1439412) /gene="ydiF" /locus_tag="STM1357" /note="similar to E. coli putative enzyme (AAC74764.1); Blastp hit to AAC74764.1 (531 aa), 93% identity in aa 15 - 531" /codon_start=1 /transl_table=11 /product="putative acetyl-CoA:acetoacetyl-CoA transferase beta subunit" /protein_id="NP_460323.3" /db_xref="GeneID:1252875" /translation="MLSAQEAVNYIPDEATLCILGAGGGILEATTLITALADKYQTTQ SPRDLSIISPTGLGDRADRGISPLAQEGLVKWALCGHWGQSPRISELAEQNKIAAYNY PQGVLTQTLRASAAHQPGILSDIGIGTFVDPRQQGGKLNDVTKEDLIKLVEIDNKEYL YYKAIAPNVAFIRATTCDSEGYASFEDEVMYLDALVIAQAVHNNGGIVMMQVQKMVKK ATLHPKSVRIPGYLVDIVVVDADQTQLYGGAPVNRFISGDFTLDDSTQLTLPLNQRKL VARRALFEMRKGAVGNVGVGIADGIGLVAREEGCADDFVLTVETGPVGGITSQGVAFG ANVNTRAILDMTSQFDFYHGGGLDVCYLSFAEVDQHGNVGVHKFNGKIMGTGGFIDIS ATSQKIIFCGTLTAGSLKTEITDGKLNILQEGRVKKFVSELPEITFSGKIALERGLDV RYITERAVFTLKQDGLHLIEIAPGVDLQRDILDKMDFSPVISPDLKLMDTRLFTDSTM GFTLPDATH" misc_feature complement(1437886..1439409) /gene="ydiF" /locus_tag="STM1357" /note="Acyl CoA:acetate/3-ketoacid CoA transferase [Lipid transport and metabolism]; Region: YdiF; COG4670" /db_xref="CDD:443707" gene complement(1439608..1440377) /gene="aroD" /locus_tag="STM1358" /db_xref="GeneID:1252876" CDS complement(1439608..1440366) /gene="aroD" /locus_tag="STM1358" /EC_number="4.2.1.10" /note="similar to E. coli 3-dehydroquinate dehydratase (AAC74763.1); Blastp hit to AAC74763.1 (252 aa), 80% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="3-dehydroquinate dehydratase" /protein_id="NP_460324.1" /db_xref="GeneID:1252876" /translation="MKTVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDI LEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGEQALTTGQYIDLNR AAVDSGLVDMIDLELFTGDDEVKATVGYAHQHNVAVIMSNHDFHKTPAAEEIVQRLRK MQELGADIPKIAVMPQTKADVLTLLTATVEMQERYADRPIITMSMSKTGVISRLAGEV FGSAATFGAVKKASAPGQISVADLRTVLTILHQA" misc_feature complement(1439611..1440366) /gene="aroD" /locus_tag="STM1358" /note="type I 3-dehydroquinate dehydratase; Region: aroD; PRK02412" /db_xref="CDD:235036" misc_feature complement(order(1439659..1439661,1439668..1439673, 1439728..1439730,1439857..1439859,1439938..1439940, 1440121..1440123,1440223..1440225,1440229..1440231, 1440304..1440306)) /gene="aroD" /locus_tag="STM1358" /note="active site" /db_xref="CDD:188633" misc_feature complement(1439857..1439859) /gene="aroD" /locus_tag="STM1358" /note="catalytic residue [active]" /db_xref="CDD:188633" misc_feature complement(order(1439623..1439625,1439632..1439634, 1439644..1439646,1439710..1439712,1439722..1439727, 1439800..1439802,1439809..1439811,1439821..1439823)) /gene="aroD" /locus_tag="STM1358" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188633" regulatory complement(1440372..1440377) /regulatory_class="ribosome_binding_site" /gene="aroD" /locus_tag="STM1358" /note="putative RBS for aroD; RegulonDB:STMS1H001601" gene complement(1440411..1441289) /gene="ydiB" /locus_tag="STM1359" /db_xref="GeneID:1252877" CDS complement(1440411..1441277) /gene="ydiB" /locus_tag="STM1359" /note="similar to E. coli putative oxidoreductase (AAC74762.1); Blastp hit to AAC74762.1 (288 aa), 90% identity in aa 1 - 288" /codon_start=1 /transl_table=11 /product="putative shikimate 5-dehydrogenase" /protein_id="NP_460325.1" /db_xref="GeneID:1252877" /translation="MDVTAKYELIGLMAYPIRHSLSPEMQNKALEKAGLPYTYMAFEV DNTTFASAIEGLKALKMRGTGVSMPNKQLACEYVDELTPAAKLVGAINTIVNDDGYLR GYNTDGTGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDF FEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMKPLENESLIG DVSLLRPELLVTECVYNPHMTKLLQQAQQAGCKTIDGYGMLLWQGAEQFELWTGKAFP LDYVKQVMGFTA" misc_feature complement(1440414..1441277) /gene="ydiB" /locus_tag="STM1359" /note="quinate/shikimate dehydrogenase; Reviewed; Region: PRK12749" /db_xref="CDD:183721" regulatory complement(1441284..1441289) /regulatory_class="ribosome_binding_site" /gene="ydiB" /locus_tag="STM1359" /note="putative RBS for ydiB; RegulonDB:STMS1H001602" gene complement(1441344..1442595) /gene="ydiN" /locus_tag="STM1360" /db_xref="GeneID:1252878" CDS complement(1441344..1442579) /gene="ydiN" /locus_tag="STM1360" /note="similar to E. coli putative amino acid/amine transport protein (AAC74761.1); Blastp hit to AAC74761.1 (423 aa), 85% identity in aa 3 - 412" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_460326.1" /db_xref="GeneID:1252878" /translation="MSQNKARNMPYLLAVICIYFSYFLHGMSVITLAQNMTSLAQKFS TDSAGIAYLISGIGLGRLVSILFFGVLSDKFGRRAIILLGAVLYMLFFFGIPASPNLM IAFILAVCVGVANSALDTGGYPALMECFPKASGSAVILVKAMVSFGQMIYPLIVSALL VNHIWYGYAVVIPGILFVLITLMLLKSRFPSQLVDASIAKELPQMNSTPLVWLEGVAS VLFGVAAFSTFYVIVVWMPKYAMAFAGMAESDALKTISYYSMGSLVCVFIFAALLKKM VRPIWANVFNAGLATITAAAIYLYPSPLICNAGAFVIGFSAAGGILQLGVSVMSEFFP KSKAKVTSIYMMMGGVANFLIPLITGYLSTIGLQYIILLDFAFALLTFITAIIVFIRY YRVFKIPQNDVRFGEHYFQ" misc_feature complement(1441398..1442540) /gene="ydiN" /locus_tag="STM1360" /note="Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters; Region: MFS_YdiM_like; cd17396" /db_xref="CDD:340954" misc_feature complement(order(1441521..1441523,1441530..1441535, 1441542..1441547,1441554..1441556,1441602..1441604, 1441614..1441616,1441626..1441631,1441782..1441784, 1441794..1441796,1441887..1441889,1441896..1441904, 1441911..1441916,1441923..1441925,1442133..1442135, 1442142..1442147,1442154..1442156,1442211..1442213, 1442220..1442228,1442232..1442237,1442385..1442387, 1442481..1442483,1442490..1442495,1442502..1442507)) /gene="ydiN" /locus_tag="STM1360" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340954" regulatory complement(1442590..1442595) /regulatory_class="ribosome_binding_site" /gene="ydiN" /locus_tag="STM1360" /note="putative RBS for ydiN; RegulonDB:STMS1H001603" gene complement(1442943..1444162) /gene="ydiM" /locus_tag="STM1361" /db_xref="GeneID:1252879" CDS complement(1442943..1444154) /gene="ydiM" /locus_tag="STM1361" /note="similar to E. coli putative transport system permease protein (AAC74760.1); Blastp hit to AAC74760.1 (404 aa), 79% identity in aa 1 - 395" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_460327.1" /db_xref="GeneID:1252879" /translation="MKNRYFPTAVGLYFNYFVHGMGVILMSLNMSSLEQQWHTSAAGV SIVISSLGIGRLSVLLIAGMLSDRFGRRPFIILGTTCYLIFFIGILYAQTIFVAYACG FLAGMANSFLDAGTYPSLMEAFPRSPSTANILIKAFVSGGQFLLPIIISLLVWANMWF GWSFLLAGAIMLINALFLLRCPFPPYPGRILKPKISQAPVTGVHHCSLIDLISYTLYG YISMATFYLISQWLAQYGQFVAGMSYTQSIKLLSIYTCGSLLCVFITAPLVRKTIRST TLLMFYTFISFIALLTVCLHPQTYIVMIFAFVIGFSSAGGVVQIGLTLMASRFPQEKG KATGIYYSAGSIATFTIPLITARISEMSIAHIMWFDTGIAAVGFLLALFIGYRSRAES QHHAEAASTAQ" misc_feature complement(1442985..1444133) /gene="ydiM" /locus_tag="STM1361" /note="Inner membrane transport protein YdiM and similar proteins of the Major Facilitator Superfamily of transporters; Region: MFS_YdiM_like; cd17396" /db_xref="CDD:340954" misc_feature complement(order(1443108..1443110,1443117..1443122, 1443129..1443134,1443141..1443143,1443189..1443191, 1443201..1443203,1443213..1443218,1443369..1443371, 1443381..1443383,1443474..1443476,1443483..1443491, 1443498..1443503,1443510..1443512,1443726..1443728, 1443735..1443740,1443747..1443749,1443804..1443806, 1443813..1443821,1443825..1443830,1443978..1443980, 1444074..1444076,1444083..1444088,1444095..1444100)) /gene="ydiM" /locus_tag="STM1361" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340954" regulatory complement(1444157..1444162) /regulatory_class="ribosome_binding_site" /gene="ydiM" /locus_tag="STM1361" /note="putative RBS for ydiM; RegulonDB:STMS1H001604" gene complement(1444295..1444654) /gene="ydiL" /locus_tag="STM1362" /db_xref="GeneID:1252880" CDS complement(1444295..1444654) /gene="ydiL" /locus_tag="STM1362" /note="similar to E. coli orf, hypothetical protein (AAC74759.1); Blastp hit to AAC74759.1 (127 aa), 59% identity in aa 10 - 127" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460328.1" /db_xref="GeneID:1252880" /translation="MMNALELQALRRIFDMTIEECTIYITQDNNSATWQRWEAGDIPI SPEIIARLKEMKARRQRRINAIVDKINNRIGNNTMRYFPDLSSFQSIYTEGDFIEWKI YQSVAAELFAHDLERLC" misc_feature complement(1444298..1444648) /gene="ydiL" /locus_tag="STM1362" /note="Domain of unknown function (DUF1870); Region: DUF1870; pfam08965" /db_xref="CDD:401061" gene complement(1444822..1444928) /gene="rprA" /locus_tag="STM1363" /db_xref="GeneID:1252881" ncRNA complement(1444822..1444928) /ncRNA_class="other" /gene="rprA" /locus_tag="STM1363" /product="regulatory RNA" /db_xref="GeneID:1252881" gene complement(1445112..1446246) /gene="ydiK" /locus_tag="STM1364" /db_xref="GeneID:1252882" CDS complement(1445112..1446230) /gene="ydiK" /locus_tag="STM1364" /note="similar to E. coli orf, hypothetical protein (AAC74758.1); Blastp hit to AAC74758.1 (370 aa), 89% identity in aa 1 - 370" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_460329.1" /db_xref="GeneID:1252882" /translation="MVNVRQPRDIAQVLLSVLFLAIMIVACLWIVQPFILGFAWAGTI VIATWPVLLKLQKILWGRRSLAVLVMTLLLVLLFVIPVALLVNSIVDGSGPLIHAVTG GDMTLPDLAWLNNIPLVGAKLYAGWHSLLDMGGSAIMAKVRPYIGTTTTWFVGQAAHI GRFMMHCALMLLFSALLYWRGEQVAMGIRHFACRLAAKRGDAAVLLAAQAIRAVALGV VVTALVQAVLGGVGLAISGVPYATLLTVVMILSCLVQLGPLPVLIPAIIWLYWTGDTT WGTVLLVWSAVVGTLDNVIRPVLIRMGADLPLLLILSGVIGGLIAFGMIGLFIGPVLL AVTWRLFSAWVHEVPAPTNEPEEILEELDDIEEANKQS" misc_feature complement(1445130..1446230) /gene="ydiK" /locus_tag="STM1364" /note="AI-2E family transporter YdiK; Region: PRK10983" /db_xref="CDD:182881" regulatory complement(1446241..1446246) /regulatory_class="ribosome_binding_site" /gene="ydiK" /locus_tag="STM1364" /note="putative RBS for ydiK; RegulonDB:STMS1H001605" gene 1446477..1449551 /gene="ydiJ" /locus_tag="STM1365" /db_xref="GeneID:1252883" regulatory 1446477..1446482 /regulatory_class="ribosome_binding_site" /gene="ydiJ" /locus_tag="STM1365" /note="putative RBS for ydiJ; RegulonDB:STMS1H001606" CDS 1446495..1449551 /gene="ydiJ" /locus_tag="STM1365" /note="similar to E. coli putative oxidase (AAC74757.1); Blastp hit to AAC74757.1 (1018 aa), 88% identity in aa 1 - 1017" /codon_start=1 /transl_table=11 /product="putative oxidase" /protein_id="NP_460330.1" /db_xref="GeneID:1252883" /translation="MIPQISQAPGVVQLVLNFLQALEQQGFTGDTATSYADRLTMSTD NSIYQLLPDAVVFPRSTADVALLARLAAEPRFTSLIFTPRGGGTGTNGQALNQGIIVD MSRYMNRIIEINPEEGWVRVEAGVIKDQLNQALKPYGYFFAPELSTSNRATLGGMINT DASGQGSLVYGKTSDHVLGIRAVLLGGDILDTQSMPVELARTLGENTTTPGRIYQTVY QSCLENRQLILDSFPKLNRFLTGYDLRHVFNDDMTRFDLTRILTGSEGTLAFITEARL DITPIPKVRRLVNVKYDSFDSALRNAPFMVDARALSVETVDSKVLNLAREDIVWHSVS ELITDVPDKEMLGLNIVEFAGDDEALIDGQVEALCHRLDGLMARAEAGVIGWQLCTDL TGIERIYAMRKKAVGLLGNAKGAAKPIPFAEDTCVPPEHLADYIAEFRALLDGHGLSY GMFGHVDAGVLHVRPALDMCDPQQELLMKQISDEVVALTARYGGLLWGEHGKGFRAEY SPAFFGEVLYGELRKIKAAFDPHNRLNPGKICPPQGIEAPMMKVDAVKRGTWDRQIPL AVRQTWRGAMECNGNGLCFNFDAKSPMCPSMKISLNRIHSPKGRATLVREWLRLLADR GVDPLKLEKELPEKRASLRTLIARTRNSWHKRKGEYDFSHEVKEAMSGCLACKACTTQ CPIKIDVPEFRSRFLQLYHTRYLRPVRDHLVATVETYAPLMARAPKTFNFFINQPVVR NLAKKHIGMVDLPLLSAPSLQQQLVGHPSANMTLEQLERMSAEQKAKTVLVVQDPFTS YYDARVVADFIRLAEKLGRRPVLLPFSPNGKAQHIKGFLNRFAKTAKKTSEFLNRIAA LGMPMVGVDPALVLCYRDEYKLALGEQRGDFHVLLVHEWLAQEINARLSVEVSGEPWY FFGHCTEVTALPGAPAQWAAIFAHFGAKLENVSVGCCGMAGTYGHELTNHKNSLGIYE LSWHQAMQRLPRNRCLATGYSCRSQVKRIEGTGVRHPLQALLEIIG" misc_feature 1446546..1448120 /gene="ydiJ" /locus_tag="STM1365" /note="FAD/FMN-containing lactate dehydrogenase/glycolate oxidase [Energy production and conversion]; Region: GlcD; COG0277" /db_xref="CDD:440046" misc_feature 1447977..1449548 /gene="ydiJ" /locus_tag="STM1365" /note="Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion]; Region: GlpC; COG0247" /db_xref="CDD:440017" gene 1449534..1449958 /locus_tag="STM1366" /db_xref="GeneID:1252884" regulatory 1449534..1449539 /regulatory_class="ribosome_binding_site" /locus_tag="STM1366" /note="putative RBS for STM1366; RegulonDB:STMS1H001607" CDS 1449548..1449958 /locus_tag="STM1366" /note="possibly involved in aromatic compounds catabolism; similar to E. coli orf, hypothetical protein (AAC74756.1); Blastp hit to AAC74756.1 (136 aa), 88% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="putative protein PaaI" /protein_id="NP_460331.1" /db_xref="GeneID:1252884" /translation="MIWKREVTLDALNAMGEGNMVGLLDIRFERIGDDTLEATMPVDH RTKQPFGLLHGGASVVLAESIGSVAGYLCTQGEQKVVGLEVNANHVRSARQGRVRGVC KALHTGARHQVWQIEIFDEQGRLCCSSRLTTAIV" misc_feature 1449548..1449955 /locus_tag="STM1366" /note="1,4-dihydroxy-2-naphthoyl-CoA hydrolase; Region: PRK10293" /db_xref="CDD:182360" misc_feature order(1449704..1449706,1449791..1449793,1449812..1449823) /locus_tag="STM1366" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:239527" misc_feature order(1449707..1449709,1449713..1449715,1449722..1449724, 1449794..1449808,1449812..1449814) /locus_tag="STM1366" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:239527" misc_feature order(1449710..1449712,1449734..1449739,1449746..1449751, 1449791..1449793) /locus_tag="STM1366" /note="PHB binding site [active]" /db_xref="CDD:239527" gene 1450009..1450245 /gene="ydiH" /locus_tag="STM1367" /db_xref="GeneID:1252885" regulatory 1450009..1450014 /regulatory_class="ribosome_binding_site" /gene="ydiH" /locus_tag="STM1367" /note="putative RBS for ydiH; RegulonDB:STMS1H001608" CDS 1450018..1450245 /gene="ydiH" /locus_tag="STM1367" /note="similar to E. coli orf, hypothetical protein (AAC74755.1); Blastp hit to AAC74755.1 (89 aa), 89% identity in aa 24 - 89" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460332.1" /db_xref="GeneID:1252885" /translation="MIYCARLHISEDDMSTDLDPTQLAIEFLRRDKTELSPAQYLKRL KQLELEFADLLTLSATELKEEIYFAWRLGVH" misc_feature 1450057..1450242 /gene="ydiH" /locus_tag="STM1367" /note="Domain of unknown function; Region: YdiH; pfam15930" /db_xref="CDD:318201" gene complement(1450533..1451885) /locus_tag="STM1368" /db_xref="GeneID:1252886" CDS complement(1450533..1451879) /locus_tag="STM1368" /note="similar to E. coli part of a kinase (AAC74799.1); Blastp hit to AAC74799.1 (463 aa), 46% identity in aa 6 - 444" /codon_start=1 /transl_table=11 /product="putative Na+-dicarboxylate symporter" /protein_id="NP_460333.1" /db_xref="GeneID:1252886" /translation="MVVTLAYIALFLVFSWVILRINQKSDSLSKSVFIAIFLGAVIGL SLHFISANHTKTIIEWYSIVGNGYVHLLKLVAIPLIFISILSAINKLENSAGIGKMSL TIVGCMLCLVMVAGFIGLLTAHVLGLDASAFVHMPSMLTTEEVNKTAAVSIPQLVTSL IPTNIFLDLTGARSVSVIGIVIFTLIAGIALLKVKKEAPEEGQKLSAGINAIQIWVMK MVRIVIALTPYGVMALMTTVFSSYRLEQFASLLGFIGACYIAIFMMFIVHAILLILSG NNPARYFRMVWPVLTFAFVSRSSAASIPLAISAQEKFGVQSTIANISASFGSSMGQNG CAGIYPAIMVAMIAPTIGIDPLSLHFLAAMLPAIALGSIGVAGVGGGGTFAALIVLST LNFPVALVGIFIAIEPIVDMARTALNVNGSMMSGVLANRILNNHTADDMPAVIDRP" misc_feature complement(1450578..1451879) /locus_tag="STM1368" /note="L-cystine transporter TcyP, sodium:dicarboxylate symporter family [Amino acid transport and metabolism]; Region: TcyP; cl46791" /db_xref="CDD:481131" regulatory complement(1451880..1451885) /regulatory_class="ribosome_binding_site" /locus_tag="STM1368" /note="putative RBS for STM1368; RegulonDB:STMS1H001609" gene 1452295..1452674 /gene="sufA" /locus_tag="STM1369" /db_xref="GeneID:1252887" regulatory 1452295..1452300 /regulatory_class="ribosome_binding_site" /gene="sufA" /locus_tag="STM1369" /note="putative RBS for sufA; RegulonDB:STMS1H001610" CDS 1452306..1452674 /gene="sufA" /locus_tag="STM1369" /note="similar to E. coli orf, hypothetical protein (AAC74754.1); Blastp hit to AAC74754.1 (122 aa), 84% identity in aa 1 - 122" /codon_start=1 /transl_table=11 /product="putative HesB-like domain protein" /protein_id="NP_460334.1" /db_xref="GeneID:1252887" /translation="MELHSDTFNPEDFPWQGLTLTPAAAAHIRELAEKQPGMLGVRLS VKQTGCAGFGYVLDTVREPDKDDLVFEAEGAKLFAPLQAMPFIDGTEVDYVQEGLNQL FKFHNPKAQNECGCGESFGV" misc_feature 1452306..1452671 /gene="sufA" /locus_tag="STM1369" /note="iron-sulfur cluster assembly scaffold protein; Provisional; Region: sufA; PRK09504" /db_xref="CDD:181915" gene 1452672..1454170 /gene="sufB" /locus_tag="STM1370" /db_xref="GeneID:1252888" regulatory 1452672..1452677 /regulatory_class="ribosome_binding_site" /gene="sufB" /locus_tag="STM1370" /note="putative RBS for sufB; RegulonDB:STMS1H001611" CDS 1452683..1454170 /gene="sufB" /locus_tag="STM1370" /note="similar to E. coli orf, hypothetical protein (AAC74753.1); Blastp hit to AAC74753.1 (508 aa), 96% identity in aa 14 - 508" /codon_start=1 /transl_table=11 /product="putative ABC transporter" /protein_id="NP_460335.1" /db_xref="GeneID:1252888" /translation="MSRNTEATEEVGIWTGGRLNYKEGFFTQLPTDELAKGISEEVVR AISAKRNEPEWMLEFRLNAYRAWLDMDEPHWLKAHYDKLNYQDYSYYSAPSCGNCDDS CVSQPGAVQQTGANTFLSKEVEDAFEQLGVPVREGKEVAVDAIFDSVSVATTYREKLA EQGIIFCSFGEAIHDHPDLVRKYLGTVVPGNDNFFAALNAAVASDGTFIYVPKGVRCP MELSTYFRINAEKTGQFERTILVADEGSYVSYIEGCSAPVRDSYQLHAAVVEVIIHKD AEVKYSTVQNWFPGDNNTGGILNFVTKRALCEGENSKMSWTQSETGSAITWKYPSCIL RGDNSIGEFYSVALTSGHQQADTGTKMIHIGKNTRSTIISKGISAGHSQNSYRGLVKI MPTATNARNFTQCDSMLIGADCGAHTFPYVECRNNSAQLEHEATTSRIGEDQLFYCLQ RGISEEDAISMIVNGFCKDVFSELPLEFAVEAQKLLAISLEHSVG" misc_feature 1452683..1454167 /gene="sufB" /locus_tag="STM1370" /note="cysteine desulfurase activator complex subunit SufB; Provisional; Region: PRK11814" /db_xref="CDD:236990" gene 1454176..1454933 /gene="sufC" /locus_tag="STM1371" /db_xref="GeneID:1252889" regulatory 1454176..1454181 /regulatory_class="ribosome_binding_site" /gene="sufC" /locus_tag="STM1371" /note="putative RBS for sufC; RegulonDB:STMS1H001612" CDS 1454187..1454933 /gene="sufC" /locus_tag="STM1371" /note="ABC superfamily (atp_bind); similar to E. coli putative ATP-binding component of a transport system (AAC74752.1); Blastp hit to AAC74752.1 (248 aa), 92% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_460336.1" /db_xref="GeneID:1252889" /translation="MLSIKDLQVSVEEKAILRGLNLEIRPGEVHAIMGPNGSGKSTLS ATLAGREDYEVTGGSVTFKGKDLLELSPEERAGEGIFMAFQYPVEIPGVSNQFFLQTA LNAVRAYRGQASLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA VLEPELCILDESDSGLDIDALKIVAEGVNALRDDKRAFIIVTHYQRILDYIKPDYVHV LYQGRIVRSGDFTLVKQLEEQGYGWLTEQQ" misc_feature 1454187..1454930 /gene="sufC" /locus_tag="STM1371" /note="cysteine desulfurase ATPase component; Reviewed; Region: sufC; PRK09580" /db_xref="CDD:181965" gene 1454895..1456179 /gene="sufD" /locus_tag="STM1372" /db_xref="GeneID:1252890" regulatory 1454895..1454900 /regulatory_class="ribosome_binding_site" /gene="sufC" /locus_tag="STM1371" /note="putative RBS for sufD; RegulonDB:STMS1H001613" CDS 1454908..1456179 /gene="sufD" /locus_tag="STM1372" /note="similar to E. coli orf, hypothetical protein (AAC74751.1); Blastp hit to AAC74751.1 (423 aa), 79% identity in aa 1 - 421" /codon_start=1 /transl_table=11 /product="iron-sulfur component of FhuF stability protein" /protein_id="NP_460337.1" /db_xref="GeneID:1252890" /translation="MAGLPNSSKALQQWQHLFEEKGESRTEQARQHLQQMLRLGLPTR KHEDWKYTPLEGLTHSQFIQQCATISAAQRDALALQIDAVRLVFVDGRFMPELSDSTQ NSGFDVSVRDERQALAAPVQPEVFLHLTESLAQCVTYIQVRRNQRPTRPLLLMHITQG VDGDELNTAHYRHHLALAEGAEATVIEHYVSLTAAKHFTGARLTMNVADNAQLRHFKL AFENASSYHFAHNDLLLATDASAFSHSFLLGAAVLRHHSSSQLNGENATLRLNSLAMP VKNEVCDTRTWLEHNKGYCNSRQLHKTIVSDKGRAVFNGLINVAQHAIKTDGQMTNNN LLLGKLAEVDTKPQLEIYADDVKCSHGATIGRIDDEQMFYLQSRGIRQQEARHMILYA FAAELTEAIHDSALKQQVLARIGQRLPGGLV" misc_feature 1454908..1456176 /gene="sufD" /locus_tag="STM1372" /note="Fe-S cluster assembly protein SufD; Region: PRK10948" /db_xref="CDD:236804" gene 1456163..1457396 /gene="sufS" /locus_tag="STM1373" /db_xref="GeneID:1252891" regulatory 1456163..1456168 /regulatory_class="ribosome_binding_site" /gene="sufS" /locus_tag="STM1373" /note="putative RBS for sufS; RegulonDB:STMS1H001614" CDS 1456176..1457396 /gene="sufS" /locus_tag="STM1373" /note="similar to E. coli orf, hypothetical protein (AAC74750.1); Blastp hit to AAC74750.1 (406 aa), 87% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="selenocysteine lyase" /protein_id="NP_460338.1" /db_xref="GeneID:1252891" /translation="MTFPVEKVRADFPILQREVNGLPLAYLDSAASAQKPNQVIDAES AFYRHGYAAVHRGIHTLSAQATESMENVRKQASRFINARSAEELVFVRGTTEGINLVA NSWGTENIRAGDNIIISEMEHHANIVPWQMLCERKGAELRVIPLHPDGTLRLETLAAL FDDRTRLLAITHVSNVLGTENPLPDMIALARQHGAKVLVDGAQAVMHHAVDVQALDCD FYVFSGHKLYGPTGIGILYVKEALLQEMPPWEGGGSMISTVSLTQGTTWAKAPWRFEA GTPNTGGIIGLGAAIDYVTSLGLDKIGDYEQMLMRYALEQLAQVPDITLYGPAQRLGV IAFNLGKHHAYDVGSFLDNYGIAVRTGHHCAMPLMAWYGVPAMCRASLAMYNTHEEVD RLVAGLTRIHRLLG" misc_feature 1456176..1457393 /gene="sufS" /locus_tag="STM1373" /note="cysteine desulfurase SufS; Region: PRK09295" /db_xref="CDD:181766" misc_feature order(1456455..1456460,1456467..1456469,1456542..1456544, 1456773..1456775,1456779..1456784,1456842..1456844, 1456848..1456853) /gene="sufS" /locus_tag="STM1373" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99746" misc_feature 1456851..1456853 /gene="sufS" /locus_tag="STM1373" /note="catalytic residue [active]" /db_xref="CDD:99746" gene 1457401..1457825 /gene="ynhA" /locus_tag="STM1374" /db_xref="GeneID:1252892" regulatory 1457401..1457406 /regulatory_class="ribosome_binding_site" /gene="ynhA" /locus_tag="STM1374" /note="putative RBS for ynhA; RegulonDB:STMS1H001615" CDS 1457409..1457825 /gene="ynhA" /locus_tag="STM1374" /note="involved in Fe-S center assembly; similar to E. coli orf, hypothetical protein (AAC74749.1); Blastp hit to AAC74749.1 (138 aa), 87% identity in aa 1 - 138" /codon_start=1 /transl_table=11 /product="putative SufE protein" /protein_id="NP_460339.1" /db_xref="GeneID:1252892" /translation="MAALPDKEKLLRNFTRCANWEEKYLYIIELGQRLAELNPQDRNP QNTIHGCQSQVWIVMRRNANGIIELQGDSDAAIVKGLMAVVFILYHQMTAQDIVHFDV RPWFEKMALAQHLTPSRSQGLEAMIRAIRAKAATLS" misc_feature 1457409..1457822 /gene="ynhA" /locus_tag="STM1374" /note="cysteine desulfuration protein SufE; Region: PRK09296" /db_xref="CDD:181767" gene 1457967..1458981 /gene="ynhG" /locus_tag="STM1375" /db_xref="GeneID:1252893" regulatory 1457967..1457972 /regulatory_class="ribosome_binding_site" /gene="ynhG" /locus_tag="STM1375" /note="putative RBS for ynhG; RegulonDB:STMS1H001616" CDS 1457980..1458981 /gene="ynhG" /locus_tag="STM1375" /note="similar to E. coli orf, hypothetical protein (AAC74748.1); Blastp hit to AAC74748.1 (334 aa), 85% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="putative LysM domain protein" /protein_id="NP_460340.1" /db_xref="GeneID:1252893" /translation="MKRASFITLTIIGAYSALQAAWAVDYPLPPEGSRLIGQNQTYTV QEGDKNLQAIARRFDTAAMLILEANNTIAPVPKPGTLITIPSQMLLPDAPREGVIVNL AELRLYYYPPGENRVQVYPIGIGLQGLETPVMDTRIGQKIPNPTWTPTAGIRQRSLER GITLPPVIPAGPNNPLGRYALRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIK ALFAQVRTGTPVKVINQPVKFSVEPNGIRYVEVHRPLSPEEEQNVQTMPYVLPAEFTA FRNAQGVDSRLVDKALYRRAGYPVSVSAGQTPAVNTTAVESAQNGFVGEEGQTRATQ" misc_feature 1458034..1458888 /gene="ynhG" /locus_tag="STM1375" /note="L,D-transpeptidase; Provisional; Region: PRK10260" /db_xref="CDD:182341" gene complement(1459048..1459287) /gene="lppB" /locus_tag="STM1376" /db_xref="GeneID:1252894" CDS complement(1459048..1459287) /gene="lppB" /locus_tag="STM1376" /note="similar to E. coli murein lipoprotein (AAC74747.1); Blastp hit to AAC74747.1 (78 aa), 88% identity in aa 2 - 71" /codon_start=1 /transl_table=11 /product="putative methyl-accepting chemotaxis protein" /protein_id="NP_460341.1" /db_xref="GeneID:1252894" /translation="MNRTNQLILGAVVLGSTLLAGCSSNAKIDQLSSDVQTLSAKVEQ LSNDVNAMRSDVQAAKDDAARANQRLDNKVFRICK" misc_feature complement(1459051..1459284) /gene="lppB" /locus_tag="STM1376" /note="major outer membrane lipoprotein; Region: PRK15396" /db_xref="CDD:185294" gene complement(1459370..1459619) /gene="lpp" /locus_tag="STM1377" /db_xref="GeneID:1252895" CDS complement(1459370..1459606) /gene="lpp" /locus_tag="STM1377" /note="links outer and inner membranes; similar to E. coli murein lipoprotein (AAC74747.1); Blastp hit to AAC74747.1 (78 aa), 96% identity in aa 1 - 78" /codon_start=1 /transl_table=11 /product="murein lipoprotein" /protein_id="NP_460342.1" /db_xref="GeneID:1252895" /translation="MNRTKLVLGAVILGSTLLAGCSSNAKIDQLSSDVQTLNAKVDQL SNDVNAMRSDVQAAKDDAARANQRLDNQATKYRK" misc_feature complement(1459373..1459606) /gene="lpp" /locus_tag="STM1377" /note="major outer membrane lipoprotein; Region: PRK15396" /db_xref="CDD:185294" regulatory complement(1459614..1459619) /regulatory_class="ribosome_binding_site" /gene="lpp" /locus_tag="STM1377" /note="putative RBS for lpp; RegulonDB:STMS1H001617" gene complement(1459917..1461452) /gene="pykF" /locus_tag="STM1378" /db_xref="GeneID:1252896" CDS complement(1459917..1461329) /gene="pykF" /locus_tag="STM1378" /EC_number="2.7.1.40" /note="formerly F; fructose stimulated; pyruvate kinase I. (SW:KPY1_SALTY)" /codon_start=1 /transl_table=11 /product="pyruvate kinase I" /protein_id="NP_460343.1" /db_xref="GeneID:1252896" /translation="MKKTKIVCTIGPKTESEEMLSKMLDAGMNVMRLNFSHGDYAEHG QRIQNLRNVMSKTGKKAAILLDTKGPEIRTIKLEGGNDVSLKAGQTFTFTTDKSVVGN NEIVAVTYEGFTSDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNL PGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVVEIREHLKAHGGENIQII SKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVIT ATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICER TDRVMNSRLDYNNDSRKLRITEAVCRGAVETAEKLEAPLIVVATQGGKSARAVRKYFP DATILALTTNEVTARQLVLSKGVVSQLVKEINSTDDFYRLGKDVALQSGLAQKGDVVV MVSGALVPSGTTNTASVHVL" misc_feature complement(1459920..1461329) /gene="pykF" /locus_tag="STM1378" /note="pyruvate kinase PykF; Region: PRK09206" /db_xref="CDD:181699" misc_feature complement(order(1460088..1460096,1460100..1460102, 1460106..1460111,1460118..1460120,1460151..1460153, 1460157..1460159,1460163..1460165,1460313..1460318, 1460322..1460324,1460409..1460411,1460415..1460417, 1460511..1460513,1460523..1460528,1460580..1460582, 1460688..1460690,1460724..1460726,1460745..1460747, 1460769..1460771,1460814..1460828,1460835..1460837, 1460853..1460858,1461111..1461122,1461144..1461146, 1461150..1461152,1461318..1461323)) /gene="pykF" /locus_tag="STM1378" /note="domain interfaces [active]" /db_xref="CDD:238178" misc_feature complement(order(1460496..1460498,1460592..1460594, 1460664..1460666,1460670..1460672,1460751..1460753, 1461132..1461134,1461228..1461230,1461234..1461236)) /gene="pykF" /locus_tag="STM1378" /note="active site" /db_xref="CDD:238178" regulatory complement(1461425..1461433) /regulatory_class="minus_10_signal" /gene="pykF" /locus_tag="STM1378" /note="putative -10_signal for pykF; RegulonDB:STMLTH004487" regulatory complement(1461444..1461452) /regulatory_class="minus_35_signal" /gene="pykF" /locus_tag="STM1378" /note="putative -35_signal for pykF; RegulonDB:STMLTH004487" protein_bind complement(1461535..1461549) /note="putative binding site for FruR, RegulonDB: STMS1H000186" /bound_moiety="FruR" gene complement(1461731..1463080) /gene="orf48" /locus_tag="STM1379" /db_xref="GeneID:1252897" CDS complement(1461731..1463074) /gene="orf48" /locus_tag="STM1379" /note="amino acid permease YeeF like protein (gi|1526981)" /codon_start=1 /transl_table=11 /product="putative amino acid permease" /protein_id="NP_460344.1" /db_xref="GeneID:1252897" /translation="MKKVKKLSLTDLVLYGLVFMVPIAPVSLYGVVYNLSHGMVALVY IIGAIAMFFTAYSYSTLSQHISSSGSAYAYAGVCINPAVGFLTGWILLLDYLLFPTLV AVLGGVAVHAILPQIPVWVWPLIYVAIGTGVNYLGIQQTAKFDKLLVFIQLGILAIFV LLIVRLMLLDSSQITLSFRPFFDSQWFTPGLIATAISVAALNFLGFDAISTLSEESEG GGRAVSKATLLALVLATVLFIIVVAFAAFATGNVDRFAEGNATNEAFFTIAGNVGGIW LKVAFSIIVAFVCAVGNIITAQTAVSRVLFSMGRDRMLPAFLAHVHTTRKTPDYAILF TGGVTLLLSYLFSGKIESISTLVNFGALFAFFVVNLCVFILFNFRMKAQRRIFAHVIS PIMGMIVIGYVCLNMNIHALILGISWAAIGIAILCYRKAHNQNIAIDLEGKKLLD" misc_feature complement(1461776..1463071) /gene="orf48" /locus_tag="STM1379" /note="Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism]; Region: PotE; COG0531" /db_xref="CDD:440297" regulatory complement(1463075..1463080) /regulatory_class="ribosome_binding_site" /gene="orf48" /locus_tag="STM1379" /note="putative RBS for orf48; RegulonDB:STMS1H001618" gene complement(1463096..1463992) /gene="orf32" /locus_tag="STM1380" /db_xref="GeneID:1252898" CDS complement(1463096..1463989) /gene="orf32" /locus_tag="STM1380" /note="proline iminopeptidase like protein (gi|1526980)" /codon_start=1 /transl_table=11 /product="putative hydrolase or acyltransferase" /protein_id="NP_460345.1" /db_xref="GeneID:1252898" /translation="MNDTYLYGEMFSENILTSYRIYGDRKSLLTPLIILHGGPSGGFD YLLNYRRLADDGRMVIFYDQYGCGRSTHFPHADASFWTIARYLRQLTQLIHHLGIGHG YSILGHSWGGMLAAEHACLQPAGLRGTILASSPASIALWQQEAIRLFNALTPMSDDDI KNVIMPAVIYQNPPEQLVAYYARHVYTLAEEAVHVQRSNAQFAADPTVYHILWGTNEL AANGKLADWDITPHLCQIRCPVLVLRGENDQATERVVSPLLSHISDCRAVTIPGSSHN PHEENIAPCLAAVSAFLRDLA" misc_feature complement(1463108..1463902) /gene="orf32" /locus_tag="STM1380" /note="A functionally diverse superfamily containing proteases, lipases, peroxidases, esterases, epoxide hydrolases and dehalogenases. The catalytic apparatus typically involves three residues (catalytic triad): a serine, a glutamate or aspartate and a...; Region: alpha/beta hydrolases; cl21494" /db_xref="CDD:473884" regulatory complement(1463987..1463992) /regulatory_class="ribosome_binding_site" /gene="orf32" /locus_tag="STM1380" /note="putative RBS for orf32; RegulonDB:STMS1H001619" gene complement(1464048..1464792) /gene="orf245" /locus_tag="STM1381" /db_xref="GeneID:1252899" CDS complement(1464048..1464785) /gene="orf245" /locus_tag="STM1381" /note="ORF 245 (gi|4456875)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460346.1" /db_xref="GeneID:1252899" /translation="MKILFIGESWHIHMIHSKGFDSFTSSKYEEGADYLLSCLRQGNI DVDYMPAHIVQTRFPQTAEALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIA DYVAEGGGLLMIGGYLSFTGIEAKANYKNTVLAEVLPVDMLDVDDRVELPQGCKAVNT AVEHVITQPFSEWPPLLGYNKLIAKENSQVLAEINGDPLLVMGTYHKGKVCCFASDCS PHWGSPQFLQWEHYATFWCNVLHTIKK" misc_feature complement(1464054..1464782) /gene="orf245" /locus_tag="STM1381" /note="Putative glutamine amidotransferase; Region: GATase1_like; pfam07090" /db_xref="CDD:399821" regulatory complement(1464787..1464792) /regulatory_class="ribosome_binding_site" /gene="orf245" /locus_tag="STM1381" /note="putative RBS for orf245; RegulonDB:STMS1H001620" gene complement(1464797..1466030) /gene="orf408" /locus_tag="STM1382" /db_xref="GeneID:1252900" CDS complement(1464797..1466023) /gene="orf408" /locus_tag="STM1382" /note="ORF 408 (gi|4456874)" /codon_start=1 /transl_table=11 /product="putative regulatory protein, deoR family" /protein_id="NP_460347.1" /db_xref="GeneID:1252900" /translation="MFKEERRHAIINLLIKDNSVSVSKLSDLYKVSQETIRSDLRYFQ KSGMLQRCYGGGILNRDALSKLITENKIDISSTIATPIHQDAKLRRENPKKAGKVCVL GSFNIDVSATVPWFPQSGESILASQFGFYPGGKGANQALAANNAGAAAHFIFKVGKDQ FSAFAMNHIIQSGITSYSAYQTDKAPTGSALIYVSAVDGDNIIAIYPGANMMLTTQEI NEQHRYIAESDVMLMQLETNIEALTEFIRLGKQENKMIMLNPAPYTKQVTHLLSDIDI ITPNETEASFLSGVTITDINDAKKAGNIILQSGVKKVIITLGARGSLICEHARTLYIP AWSAVVKDAAGAGDAFNGALAAALARQADMVAAIQYASAFASLAVEQVGASSMPQHLQ VLHRMRTQSNKVIHIN" misc_feature complement(<1465844..1466023) /gene="orf408" /locus_tag="STM1382" /note="DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]; Region: GlpR; COG1349" /db_xref="CDD:440960" misc_feature complement(1464860..1465732) /gene="orf408" /locus_tag="STM1382" /note="Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides...; Region: ribokinase; cd01174" /db_xref="CDD:238579" misc_feature complement(order(1464872..1464874,1464980..1464982, 1464989..1464994,1465316..1465318,1465409..1465411, 1465415..1465417,1465448..1465450,1465454..1465456, 1465610..1465612,1465619..1465627,1465700..1465702, 1465706..1465708)) /gene="orf408" /locus_tag="STM1382" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238579" misc_feature complement(order(1465238..1465240,1465403..1465426, 1465445..1465453,1465457..1465459,1465619..1465621, 1465658..1465678,1465691..1465693,1465697..1465699)) /gene="orf408" /locus_tag="STM1382" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238579" misc_feature complement(order(1464887..1464889,1464896..1464901, 1464908..1464910,1464974..1464976,1464983..1464988, 1464995..1464997,1465004..1465006,1465022..1465024, 1465061..1465063,1465070..1465078,1465184..1465186)) /gene="orf408" /locus_tag="STM1382" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238579" regulatory complement(1466025..1466030) /regulatory_class="ribosome_binding_site" /gene="orf408" /locus_tag="STM1382" /note="putative RBS for orf408; RegulonDB:STMS1H001621" gene complement(1466346..1469416) /gene="ttrA" /locus_tag="STM1383" /db_xref="GeneID:1252901" CDS complement(1466346..1469408) /gene="ttrA" /locus_tag="STM1383" /note="tetrathionate reductase subunit A (TtrA) (gi|4456873)" /codon_start=1 /transl_table=11 /product="tetrathionate reductase complex, subunit A" /protein_id="NP_460348.1" /db_xref="GeneID:1252901" /translation="MANLTRRQWLKVGLAVGGMVTFGLSYRDVAKRAIDGLLNGTSGK VTRDRIFGNALIPEAQAQTHWQQNPQQTIAMTQCFGCWTQCGIRARVNADGKVIRIAG NPYHPLSQEHPIDSSVPFSEAMEQLAGESGLDARSTACARGATLLESLYSPLRLLEPM KRVGKRGEGKWQRISFEQLIEEVVEGGDLFGEGHVDGLRAIHAPDTPIDAKHPSFGPK TNQLLVTNTSDEGRDAFLRRFALNSFGSKNFGAHGAYCGLAYRAGSGALMGDLDKNPH VKPDWENVEFALFMGTSPAQSGNPFKRQARQLASARLRENFQYVVVAPALPLSTVLAD PRGRWQPVMPGSDSALAMGMIRWIMDNQRYNADYLAIPGVQAMQQAGEQSWTNATHLV IADELPTLAGQHLTLRHLTPDGEETPVVLNTDGELVDASTCRQARLFVTQYVTLADGQ RVTVKSGLQRLKEAAEKLSLAQYSEQCGVPEAQIIALAETFTSHGRKAAVISHGGMMA GNGFYNAWSVMMLNALIGNLSLSGGVFVGGGKFNGVSDGPRYNMNSFAGKVKPSGLSI ARSKTAYEASEEYRDKIAGGQSPYPAKAPWYPFVAGQLTELLTSALEGYPYPLKAWIS NMSNPFYGVPGLRAVAEEKLKDPRRLPLFIAIDAFMNETTALADYIVPDTHNFESWGF TAPWGGVASKATTARWPVVAPATHRTADGQPVSMEAFCIAVAKRLHLPGFGDRAITDP QGNTFPLNRAEDFYLRVAANIAFMGKTPVALANQEDISLTGVSRILPAIQHTLKADEV GRVAFIYSRGGRFAPEDSGYTEQRLGNAWKKPLQIWNADVAAHRHAITGERFSGCPVW YPARLSDGRAIDDQFPIGQWPLKLISFKSNTMSSSTAVIPRLHHVKPANLVALNPQDG ERYGLQHGDRVRIITPGGQVVAQISLLNGVMPGVIAIEHGYGHREMGATQHSLDGVPM PYDPQIRAGINLNDLGFADPTRTITNTWLDWVSGAAVRQGLPAKIERI" misc_feature complement(1466349..1469405) /gene="ttrA" /locus_tag="STM1383" /note="tetrathionate reductase subunit TtrA; Region: PRK14991" /db_xref="CDD:237883" gene complement(1469401..1470431) /gene="ttrC" /locus_tag="STM1384" /db_xref="GeneID:1252902" CDS complement(1469401..1470423) /gene="ttrC" /locus_tag="STM1384" /note="tetrathionate reductase subunit C (TtrC) (gi|4456872)" /codon_start=1 /transl_table=11 /product="tetrathionate reductase complex, subunit C" /protein_id="NP_460349.1" /db_xref="GeneID:1252902" /translation="MTHSLIIEEVLAHPQDISWLPWAVQYFFFIGIAACAALFACYLH WRKKDAATEENRALLIAITCAITAPLALTADLHQTARVWHFYAWPTPWSWMPWGALFL PLFTGFLALWFLAQQIKRLFNKSYNVTKWLALASALCAVGLLIYTGREVSVVLARPIW FSYAFPVAMFLSALQAFFALMIVAARRDSVRLPKILWGQIWTLAALGLVVAMWVSGDT LSGTAIRQWITVALSAKYYAVGWVALWVCTLLFCSLALRHPLSQLRRVLLVLSALALC WLMRWTLLIQVQTVPKFNAQFNPYSLPGGTDGWLAILGTFGLWIALLIIIRETLNGLT RRLQHG" misc_feature complement(1469404..1470408) /gene="ttrC" /locus_tag="STM1384" /note="tetrathionate reductase subunit TtrC; Region: PRK14992" /db_xref="CDD:184954" regulatory complement(1469411..1469416) /regulatory_class="ribosome_binding_site" /gene="ttrC" /locus_tag="STM1384" /note="putative RBS for ttrA; RegulonDB:STMS1H001622" gene complement(1470424..1471176) /gene="ttrB" /locus_tag="STM1385" /db_xref="GeneID:1252903" CDS complement(1470424..1471176) /gene="ttrB" /locus_tag="STM1385" /note="tetrathionate reductase subunit B (TtrB) (gi|4456871)" /codon_start=1 /transl_table=11 /product="tetrathionate reductase complex, subunit B" /protein_id="NP_460350.1" /db_xref="GeneID:1252903" /translation="MWTGVNMDSSKRQFLQQLGVLTAGASLVPLAEAKFPFSPERHEG SPRHRYAMLIDLRRCIGCQSCTVSCTIENQTPQGAFRTTVNQYQVQREGSQEVTNVLL PRLCNHCDNPPCVPVCPVQATFQREDGIVVVDNKRCVGCAYCVQACPYDARFINHETQ TADKCTFCVHRLEAGLLPACVESCVGGARIIGDIKDPHSRIATMLHQHRDAIKVLKPE NGTSPHVFYLGLDDAFVTPLMGRAQPALWQEV" misc_feature complement(1470427..1471158) /gene="ttrB" /locus_tag="STM1385" /note="tetrathionate reductase subunit TtrB; Region: PRK14993" /db_xref="CDD:184955" regulatory complement(1470426..1470431) /regulatory_class="ribosome_binding_site" /gene="ttrB" /locus_tag="STM1385" /note="putative RBS for ttrC; RegulonDB:STMS1H001623" gene 1471334..1473118 /gene="ttrS" /locus_tag="STM1386" /db_xref="GeneID:1252904" regulatory 1471334..1471339 /regulatory_class="ribosome_binding_site" /gene="ttrS" /locus_tag="STM1386" /note="putative RBS for ttrS; RegulonDB:STMS1H001624" CDS 1471340..1473118 /gene="ttrS" /locus_tag="STM1386" /EC_number="2.7.3.-" /EC_number="2.7.1.40" /note="TtrS (gi|4456870)" /codon_start=1 /transl_table=11 /product="tetrathionate reductase complex: sensory transduction histidine kinase" /protein_id="NP_460351.1" /db_xref="GeneID:1252904" /translation="MRGKTVRRLAVLAAVGLLCHGAWAGTWNIGILAMRGEASTRSHW QPLAKTLSQQLPGETFHIQPLDLHQMQEAVNQGTVQFVITNPAQFVQLNSHAPLRWLA SLRSTRDGKAVSNVIGSVILTRRDSGITTAHDLIGKTVGAIDAQAFGGYLLGYKALSD AGLRPERDFHLRFTGFPGDALVYMLREKAVQAAIVPVCLLENMDQEGLINKKDFIALL SRPTPLPCLTSTPLYPDWSFAALPAVSDALADRVTRALFNAPAAASFHWGAPASTSQV EALLRDVRQHPQQRRLWLDVKSWLIQHQLMVGGVILAFLLLTLNYIWVMLLVRRRGKQ LERNSVVLHQHERALETARQMSVLGEMTSGFAHELNQPLSAIRHYAQGCLIRLRAADE QHPLLPALEQIDQQAQRGADTLRNLRHWVSQAQGNPVLTEAWKAIAIREAIDHVWQLL RMAQQFPTVTLHTEVSAALRVTLPSVLLEQVLANIILNAAQAGATHLWIVAERTENGI SIVLQDNAGGIDEALLRQAFQPFMTTRKEGMGLGLAICQRLVRYGRGDISIRNQTAPD GLSGTVVTIHFLHENGGRDGDNSSTG" misc_feature 1471403..1473067 /gene="ttrS" /locus_tag="STM1386" /note="tetrathionate respiration histidine kinase TtrS; Region: tetrathio_HK; NF040750" /db_xref="CDD:468714" gene 1473088..1473713 /gene="ttrR" /locus_tag="STM1387" /db_xref="GeneID:1252905" regulatory 1473088..1473093 /regulatory_class="ribosome_binding_site" /gene="ttrR" /locus_tag="STM1387" /note="putative RBS for ttrR; RegulonDB:STMS1H001625" CDS 1473093..1473713 /gene="ttrR" /locus_tag="STM1387" /note="TtrR (gi|4456869)" /codon_start=1 /transl_table=11 /product="tetrathionate reductase complex: response regulator" /protein_id="NP_460352.3" /db_xref="GeneID:1252905" /translation="MATIHLLDDDTAVTNACAFLLESLGYDVKCWTQGADFLAQASLY QAGVVLLDMRMPVLDGQGVHDALRQCGSTLAVVFLTGHGDVPMAVEQMKRGAVDFLQK PVSVKPLQAALERALTVSSAAVARREIILCYQQLTPKERELASLVAKGFMNREIAEAM NIAVRTVEVHRARVMEKMQAGSLAELIRRFEKMASPETRIRTTYEP" misc_feature 1473099..1473671 /gene="ttrR" /locus_tag="STM1387" /note="tetrathionate respiration response regulator TtrR; Region: tetrathio_RR; NF040749" /db_xref="CDD:468713" gene 1473792..1474023 /gene="orf70" /locus_tag="STM1388" /db_xref="GeneID:1252906" regulatory 1473792..1473797 /regulatory_class="ribosome_binding_site" /gene="orf70" /locus_tag="STM1388" /note="putative RBS for orf70; RegulonDB:STMS1H001626" CDS 1473811..1474023 /gene="orf70" /locus_tag="STM1388" /note="hypothetical 7.9 Kda protein in ssrB-ttRr intergenic region (ORF70). (SW:YDHZ_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460353.1" /db_xref="GeneID:1252906" /translation="MTKPTKDDELYREMCRVVGKVVLEMRDLGQEPKYIVIAGVLRTA LANQRIQRSALEKQAMETVINALARS" misc_feature 1473811..1474017 /gene="orf70" /locus_tag="STM1388" /note="fumarate hydratase FumD; Region: PRK10292" /db_xref="CDD:182359" gene complement(1474119..1475089) /gene="orf319" /locus_tag="STM1389" /db_xref="GeneID:1252907" CDS complement(1474119..1475078) /gene="orf319" /locus_tag="STM1389" /note="ORF 319 (gi|4456867)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460354.1" /db_xref="GeneID:1252907" /translation="MNNKPVVGISGCLTGATVRFDGGHKRMDFVMNSLAPWVAYKPIC PEVAIGLPVPRPALRLIQTTCGDIRMRYSHAPHDDVTERMNAFADRFLPTIGELAGFI VCAKSPSCGMERVRLYDEKGNRGRKAGTGLFTAAMMDKYPWLPIEEDGRLHDPVLREN FIARIFALHELNALRAQGLSRHSLLAFHSRYKLQLLAHHQAGYREIGPFVARLHEWDD LDAFFVRYREKLMAILRHPASRKNHTNVLMHIQGYFHRALNSRQRAELREVILGYRAG RLPILAPLTLLKHYLAEHPDDYLRSQNYFEPYPDTLGLRLAIT" misc_feature complement(1474134..1474874) /gene="orf319" /locus_tag="STM1389" /note="Uncharacterized conserved protein YbgA, DUF1722 family [Function unknown]; Region: YbgA; COG3272" /db_xref="CDD:442503" regulatory complement(1475084..1475089) /regulatory_class="ribosome_binding_site" /gene="orf319" /locus_tag="STM1389" /note="putative RBS for orf319; RegulonDB:STMS1H001627" gene complement(1475251..1475979) /gene="orf242" /locus_tag="STM1390" /db_xref="GeneID:1252908" CDS complement(1475251..1475979) /gene="orf242" /locus_tag="STM1390" /note="ORF 242 (gi|4456866)" /codon_start=1 /transl_table=11 /product="putative regulatory proteins, merR family" /protein_id="NP_460355.1" /db_xref="GeneID:1252908" /translation="MSYSIGEFARLCGINAATLRAWQRRYGLLKPQRTDGGHRLYSDD DIRQALSILDWVRKGVPISQVKPLLSRPVIRLGDNWITIQETMLQHLHEGRIDALRQL IYDCGREYPRAELVTHLLRPLRSKVSAHLPAVMTLREILDGIIIAYTSFCLEGDRKAP GNNAFISGWNLSDHCEIWLETLTRTGQELRLNVLPSPPVVLAPELFAQRKWFLVTTGK LTAGQKKQLAQWRNVVASLEVITL" misc_feature complement(1475287..1475973) /gene="orf242" /locus_tag="STM1390" /note="HTH-type transcriptional regulator MlrA; Region: PRK15043" /db_xref="CDD:185003" gene complement(1476158..1476801) /gene="ssrB" /locus_tag="STM1391" /db_xref="GeneID:1252909" CDS complement(1476158..1476796) /gene="ssrB" /locus_tag="STM1391" /note="homologous with degU/uvrY/bvgA; SsrB (gi|2765824)" /codon_start=1 /transl_table=11 /product="secretion system regulator: transcriptional activator" /protein_id="NP_460356.1" /db_xref="GeneID:1252909" /translation="MKEYKILLVDDHEIIINGIMNALLPWPHFKIVEHVKNGLEVYNA CCAYEPDILILDLSLPGINGLDIIPQLHQRWPAMNILVYTAYQQEYMTIKTLAAGANG YVLKSSSQQVLLAALQTVAVNKRYIDPTLNREAILAELNADTTNHQLLTLRERQVLKL IDEGYTNHGISEKLHISIKTVETHRMNMMRKLQVHKVTELLNCARRMRLIEY" misc_feature complement(1476164..1476796) /gene="ssrB" /locus_tag="STM1391" /note="two component system response regulator; Region: PRK15369" /db_xref="CDD:185267" regulatory complement(1476796..1476801) /regulatory_class="ribosome_binding_site" /gene="ssrB" /locus_tag="STM1391" /note="putative RBS for ssrB; RegulonDB:STMS1H001628" gene complement(1476827..1479596) /gene="ssrA" /locus_tag="STM1392" /db_xref="GeneID:1252910" CDS complement(1476827..1479589) /gene="ssrA" /locus_tag="STM1392" /EC_number="2.7.3.-" /EC_number="2.7.1.40" /note="SpiR (gi|1498305)" /codon_start=1 /transl_table=11 /product="secretion system regulator: Sensor component" /protein_id="NP_460357.1" /db_xref="GeneID:1252910" /translation="MNLLNLKNTLQTSLVIRLTFLFLLTTIIIWLLSVLTAAYISMVQ KRQHIIEDLSVLSEMNIVLSNQRFEEAERDAKNLMYQCSLATEIHHNDIFPEVSRHLS VGPSNCTPTLNGEKHRLFLQSSDIDENSFRRDSFILNHKNEISLLSTDNPSDYSTLQP LTRKSFPLYPTHAGFYWSEPEYINGKGWHASVAVADQQGVFFEVTVKLPDLITKSHLP LDDSIRVWLDQNNHLLPFSYIPQKIRTQLENVTLHDGWQQIPGFLILRTTLHGPGWSL VTLYPYGNLHNRILKIILQQIPFTLTALVLMTSAFCWLLHRSLAKPLWRFVDVINKTA TAPLSTRLPAQRLDELDSIAGAFNQLLDTLQVQYDNLENKVAERTQALNEAKKRAERA NKRKSIHLTVISHELRTPMNGVLGAIELLQTTPLNIEQQGLADTARNCTLSLLAIINN LLDFSRIESGHFTLHMEETALLPLLDQAMQTIQGPAQSKKLSLRTFVGQHVPLYFHTD SIRLRQILVNLLGNAVKFTETGGIRLTVKRHEEQLIFLVSDSGKGIEIQQQSQIFTAF YQADTNSQGTGIGLTIASSLAKMMGGNLTLKSVPGVGTCVSLVLPLQEYQPPQPIKGT LSAPFCLHRQLACWGIRGEPPHQQNALLNAELLYFSGKLYDLAQQLILCTPNMPVINN LLPPWQLQILLVDDADINRDIIGKMLVSLGQHVTIAASSNEALTLSQQQRFDLVLIDI RMPEIDGIECVRLWHDEPNNLDPDCMFVALSASVATEDIHRCKKNGIHHYITKPVTLA TLARYISIAAEYQLLRNIELQEQDPSRCSALLATDDMVINSKIFQSLDLLLADIENAV SAGEKIDQLIHTLKGCLGQIGQTELVCYVIDIENRVKMGKIIALEELTDLRQKIRMIF KNYTIT" misc_feature complement(1476830..1479574) /gene="ssrA" /locus_tag="STM1392" /note="two component system sensor kinase; Region: PRK15347" /db_xref="CDD:237951" regulatory complement(1479591..1479596) /regulatory_class="ribosome_binding_site" /gene="ssrA" /locus_tag="STM1392" /note="putative RBS for ssrA; RegulonDB:STMS1H001629" gene 1479990..1480391 /gene="ssaB" /locus_tag="STM1393" /db_xref="GeneID:1252911" CDS 1479990..1480391 /gene="ssaB" /locus_tag="STM1393" /note="SpiC (gi|1498306)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460358.1" /db_xref="GeneID:1252911" /translation="MSEEGFMLAVLKGIPLIQDIRAEGNSRSWIMTIDGHPARGEIFS EAFSISLFLNDLESLPKPCLAYVTLLLAAHPDVHDYAIQLTADGGWLNGYYTTSSSSE LIAIEIEKHLALTCILKNVIRNHHKLYSGGV" misc_feature 1480008..1480388 /gene="ssaB" /locus_tag="STM1393" /note="type III secretion system protein SpiC; Region: PRK15368" /db_xref="CDD:185266" gene 1480387..1481886 /gene="ssaC" /locus_tag="STM1394" /db_xref="GeneID:1252912" regulatory 1480387..1480392 /regulatory_class="ribosome_binding_site" /gene="ssaC" /locus_tag="STM1394" /note="putative RBS for ssaC; RegulonDB:STMS1H001630" CDS 1480393..1481886 /gene="ssaC" /locus_tag="STM1394" /note="SpiA (gi|1498307)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460359.1" /db_xref="GeneID:1252912" /translation="MVVNKRLILILLFILNTAKSDELSWKGNDFTLYARQMPLAEVLH LLSENYDTAITISPLITATFSGKIPPGPPVDILNNLAAQYDLLTWFDGSMLYVYPASL LKHQVITFNILSTGRFIHYLRSQNILSSPGCEVKEITGTKAVEVSGVPSCLTRISQLA SVLDNALIKRKDSAVSVSIYTLKYATAMDTQYQYRDQSVVVPGVVSVLREMSKTSVPT SSTNNGSPATQALPMFAADPRQNAVIVRDYAANMAGYRKLITELDQRQQMIEISVKII DVNAGDINQLGIDWGTAVSLGGKKIAFNTGLNDGGASGFSTVISDTSNFMVRLNALEK SSQAYVLSQPSVVTLNNIQAVLDKNITFYTKLQGEKVAKLESITTGSLLRVTPRLLND NGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQI HSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVVNNGISHG" misc_feature 1480444..1481877 /gene="ssaC" /locus_tag="STM1394" /note="EscC/YscC/HrcC family type III secretion system outer membrane ring protein; Region: PRK15346" /db_xref="CDD:237950" gene 1481867..1483078 /gene="ssaD" /locus_tag="STM1395" /db_xref="GeneID:1252913" CDS 1481867..1483078 /gene="ssaD" /locus_tag="STM1395" /note="SpiB (gi|1498308)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460360.1" /db_xref="GeneID:1252913" /translation="MAYLMVNPKSSWKIRFLGHVLQGREVWLNEGNLSLGEKGCDICI PLAINEKIILREQADSLFVDAGKARVRVNGRRFNPNKPLPSSGVLQVAGVAIAFGKQD CELADYQIPVSRSGYWWLAGVFLIFIGGMGVLLSISGQPETVNDLPLRVKFLLDKSNI HYVRAQWKEDGSLQLSGYCSSSEQMQKVRATLESWGVMYRDGVICDDLLVREVQDVLI KMGYPHAEVSSEGPGSVLIHDDIQMDQQWRKVQPLLADIPGLLHWQISHSHQSQGDDI ISAIIENGLVGLVNVTPMRRSFVISGVLDESHQRILQETLAALKKKDPALSLIYQDIA PSHDESKYLPAPVAGFVQSRHGNYLLLTNKERLRVGALLPNGGEIVHLSADVVTIKHY DTLINYPLDFK" misc_feature 1481888..1483072 /gene="ssaD" /locus_tag="STM1395" /note="EscD/YscD/HrpQ family type III secretion system inner membrane ring protein; Region: PRK15367" /db_xref="CDD:185265" gene 1483080..1483328 /gene="ssaE" /locus_tag="STM1396" /db_xref="GeneID:1252914" regulatory 1483080..1483085 /regulatory_class="ribosome_binding_site" /gene="ssaE" /locus_tag="STM1396" /note="putative RBS for ssaE; RegulonDB:STMS1H001631" CDS 1483086..1483328 /gene="ssaE" /locus_tag="STM1396" /note="putative secretory apparatus component (gi|3377860)" /codon_start=1 /transl_table=11 /product="secretion system effector" /protein_id="NP_460361.1" /db_xref="GeneID:1252914" /translation="MTTLTRLEDLLLHSREEAKGIILQLRAARKQLEENNGKLQDPQQ YQQNTLLLEAIEQAENIINIIYYRYHNSALVVSEQE" misc_feature 1483086..1483325 /gene="ssaE" /locus_tag="STM1396" /note="type III secretion system chaperone SsaE; Provisional; Region: PRK15366" /db_xref="CDD:185264" gene 1483585..1483918 /gene="sseA" /locus_tag="STM1397" /db_xref="GeneID:1252915" regulatory 1483585..1483590 /regulatory_class="ribosome_binding_site" /gene="sseA" /locus_tag="STM1397" /note="putative RBS for sseA; RegulonDB:STMS1H001632" CDS 1483592..1483918 /gene="sseA" /locus_tag="STM1397" /note="SseA (gi|3377861)" /codon_start=1 /transl_table=11 /product="secretion system effector" /protein_id="NP_460362.1" /db_xref="GeneID:1252915" /translation="MMIKKKAAFSEYRDLEQSYMQLNHCLKKFHQIRAKVSQQLAERA ESPKNSRETESILHNLFPQGVAGVNQEAEKDLKKIVSLFKQLEVRLKQLNAQAPVEIP SGKTKR" misc_feature 1483595..1483915 /gene="sseA" /locus_tag="STM1397" /note="type III secretion system chaperone SseA; Provisional; Region: PRK15365" /db_xref="CDD:185263" gene 1483919..1484515 /gene="sseB" /locus_tag="STM1398" /db_xref="GeneID:1252916" regulatory 1483919..1483924 /regulatory_class="ribosome_binding_site" /gene="sseB" /locus_tag="STM1398" /note="putative RBS for sseB; RegulonDB:STMS1H001633" CDS 1483925..1484515 /gene="sseB" /locus_tag="STM1398" /note="putative secreted protein (gi|3377862)" /codon_start=1 /transl_table=11 /product="secretion system effector" /protein_id="NP_460363.1" /db_xref="GeneID:1252916" /translation="MSSGNILWGSQNPIVFKNSFGVSNADTGSQDDLSQQNPFAEGYG VLLILLMVIQAIANNKFIEVQKNAERARNTQEKSNEMDEVIAKAAKGDAKTKEEVPED VIKYMRDNGILIDGMTIDDYMAKYGDHGKLDKGGLQAIKAALDNDANRNTDLMSQGQI TIQKMSQELNAVLTQLTGLISKWGEISSMIAQKTYS" misc_feature 1483925..1484512 /gene="sseB" /locus_tag="STM1398" /note="type III secretion system translocon protein SseB; Region: PRK15364" /db_xref="CDD:185262" gene 1484507..1484985 /gene="sscA" /locus_tag="STM1399" /db_xref="GeneID:1252917" regulatory 1484507..1484512 /regulatory_class="ribosome_binding_site" /gene="sscA" /locus_tag="STM1399" /note="putative RBS for sscA; RegulonDB:STMS1H001634" CDS 1484512..1484985 /gene="sscA" /locus_tag="STM1399" /note="putative secretion chaperone (gi|3377863)" /codon_start=1 /transl_table=11 /product="secretion system chaparone" /protein_id="NP_460364.1" /db_xref="GeneID:1252917" /translation="MKKDPTLQQAHDTMRFFRRGGSLRMLLDDDVTQPLNTLYRYATQ LMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA PQAPWAAAECYLACDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQLSDRS" misc_feature 1484512..1484982 /gene="sscA" /locus_tag="STM1399" /note="CesD/SycD/LcrH family type III secretion system chaperone SscA; Region: PRK15363" /db_xref="CDD:185261" misc_feature 1484620..1484700 /gene="sscA" /locus_tag="STM1399" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(1484626..1484631,1484638..1484643,1484647..1484649, 1484719..1484721,1484728..1484733,1484740..1484745, 1484749..1484754,1484821..1484823,1484830..1484835, 1484842..1484847,1484854..1484856) /gene="sscA" /locus_tag="STM1399" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 1484713..1484805 /gene="sscA" /locus_tag="STM1399" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 1484818..1484904 /gene="sscA" /locus_tag="STM1399" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene 1484980..1486442 /gene="sseC" /locus_tag="STM1400" /db_xref="GeneID:1252918" regulatory 1484980..1484985 /regulatory_class="ribosome_binding_site" /gene="sscA" /locus_tag="STM1399" /note="putative RBS for sseC; RegulonDB:STMS1H001635" CDS 1484988..1486442 /gene="sseC" /locus_tag="STM1400" /note="SseC (gi|3377864)" /codon_start=1 /transl_table=11 /product="secretion system effector" /protein_id="NP_460365.1" /db_xref="GeneID:1252918" /translation="MNRIHSNSDSAAGVTALTHHHLSNVSCVSSGSLGKRQHRVNSTF GDGNAACLLSGKISLQEASNALKQLLDAVPGNHKRPSLPDFLQTNPAVLSMMMTSLIL NVFGNNAQSLCQQLERATEVQNALRNKQVKEYQEQIQKAIEQEDKARKAGIFGAIFDW ITGIFETVIGALKVVEGFLSGNPAEMASGVAYMAAGCAGMVKAGAETAMMCGADHDTC QAIIDVTSKIQFGCEAVALALDVFQIGRAFMATRGLSGAAAKVLDSGFGEEVVERMVG AGEAEIEELAEKFGEEVSESFSKQFEPLEREMAMANEMAEEAAEFSRNVENNMTRSAG KSFTKEGVKAMAKEAAKEALEKCVQEGGKFLLKKFRNKVLFNMFKKILYALLRDCSFK GLQAIRCATEGASQMNTGMVNTEKAKIEKKIEQLITQQRFLDFIMQQTENQKKIEQKR LEELYKGSGAALRDVLDTIDHYSSVQARIAGYRA" misc_feature 1484997..1486439 /gene="sseC" /locus_tag="STM1400" /note="type III secretion system translocon protein; Region: PRK15362" /db_xref="CDD:237952" gene 1486451..1487045 /gene="sseD" /locus_tag="STM1401" /db_xref="GeneID:1252919" regulatory 1486451..1486456 /regulatory_class="ribosome_binding_site" /gene="sseD" /locus_tag="STM1401" /note="putative RBS for sseD; RegulonDB:STMS1H001636" CDS 1486458..1487045 /gene="sseD" /locus_tag="STM1401" /note="SseD (gi|3776122)" /codon_start=1 /transl_table=11 /product="secretion system effector" /protein_id="NP_460366.1" /db_xref="GeneID:1252919" /translation="MEASNVALVLPAPSLLTPSSTPSPSGEGMGTESMLLLFDDIWMK LMELAKKLRDIMRSYNVEKQRLAWELQVNVLQTQMKTIDEAFRASMITAGGAMLSGVL TIGLGAVGGETGLIAGQAVGHTAGGVMGLGAGVAQRQSDQDKAIADLQQNGAQSYNKS LTEIMEKATEIMQQIIGVGSSLVTVLAEILRALTR" misc_feature 1486458..1487042 /gene="sseD" /locus_tag="STM1401" /note="type III secretion system translocon protein SseD; Region: PRK15361" /db_xref="CDD:185259" gene 1487042..1487464 /gene="sseE" /locus_tag="STM1402" /db_xref="GeneID:1252920" regulatory 1487042..1487047 /regulatory_class="ribosome_binding_site" /gene="sseE" /locus_tag="STM1402" /note="putative RBS for sseE; RegulonDB:STMS1H001637" CDS 1487048..1487464 /gene="sseE" /locus_tag="STM1402" /note="SseE (gi|3377866)" /codon_start=1 /transl_table=11 /product="secretion system effector" /protein_id="NP_460367.1" /db_xref="GeneID:1252920" /translation="MVQEIEQWLRRHQVFTEPAYLGETAILLGQQFILSPYLVIYRIE AKEMIICEFRRLTPGQPRPQQLFHLLGLLRGIFVHHPQLTCLKMLIITDVLDEKKAML RRKLLRILTVMGATFTQLDGDNWTVLSAEHLIQRRF" misc_feature 1487051..1487461 /gene="sseE" /locus_tag="STM1402" /note="pathogenicity island 2 effector protein SseE; Provisional; Region: PRK15360" /db_xref="CDD:185258" gene 1487516..1487950 /gene="sscB" /locus_tag="STM1403" /db_xref="GeneID:1252921" CDS 1487516..1487950 /gene="sscB" /locus_tag="STM1403" /note="SscB (gi|3377867)" /codon_start=1 /transl_table=11 /product="secretion system chaparone" /protein_id="NP_460368.1" /db_xref="GeneID:1252921" /translation="MMMKEDQKNKIPEDILKQLLSVDPETVYASGYASWQEGDYSRAV IDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCL KMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTLIA" misc_feature 1487516..1487947 /gene="sscB" /locus_tag="STM1403" /note="type III secretion system chaperone protein SscB; Provisional; Region: PRK15359" /db_xref="CDD:185257" misc_feature order(1487609..1487614,1487618..1487620,1487690..1487692, 1487699..1487704,1487711..1487716,1487720..1487725, 1487792..1487794,1487801..1487806,1487813..1487818, 1487825..1487827) /gene="sscB" /locus_tag="STM1403" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 1487684..1487776 /gene="sscB" /locus_tag="STM1403" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 1487789..1487875 /gene="sscB" /locus_tag="STM1403" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene 1487962..1488748 /gene="sseF" /locus_tag="STM1404" /db_xref="GeneID:1252922" regulatory 1487962..1487967 /regulatory_class="ribosome_binding_site" /gene="sseF" /locus_tag="STM1404" /note="putative RBS for sseF; RegulonDB:STMS1H001638" CDS 1487966..1488748 /gene="sseF" /locus_tag="STM1404" /note="SseF (gi|3377868)" /codon_start=1 /transl_table=11 /product="secretion system effector" /protein_id="NP_460369.1" /db_xref="GeneID:1252922" /translation="MKIHIPSAASNIVDGNSPPSDIQAKEVSFPPPEIPAPGTPAAPV LLTPEQIRQQRDYAIHFMQYTIRALGATVVFGLSVAAAVISGGAGLPIAILAGAALVI AIGDACCAYHNYQSICQQKEPLQTASDSVALVVSALALKCGASLNCANTLANCLSLLI RSGIAISMLVLPLQFPLPAAENIAASLDMGSVITSVSLTAIGAVLDYCLARPSGDDQE NSVDELHADPSVLLAEQMAALCQSATTPALMDSSDHTSRGEP" misc_feature 1488029..1488745 /gene="sseF" /locus_tag="STM1404" /note="type III secretion systems effector SseF; Region: PRK15358" /db_xref="CDD:185256" gene 1488741..1489434 /gene="sseG" /locus_tag="STM1405" /db_xref="GeneID:1252923" regulatory 1488741..1488746 /regulatory_class="ribosome_binding_site" /gene="sseG" /locus_tag="STM1405" /note="putative RBS for sseG; RegulonDB:STMS1H001639" CDS 1488745..1489434 /gene="sseG" /locus_tag="STM1405" /note="SseG (gi|3377858)" /codon_start=1 /transl_table=11 /product="secretion system effector" /protein_id="NP_460370.1" /db_xref="GeneID:1252923" /translation="MKPVSPNAQVGGQRPVNAPEESPPCPSLPHPETNMESGRIGPQQ GKERVLAGLAKRVIECFPKEIFSWQTVILGGQILCCSAGIALTVLSGGGAPLVALAGI GLAIAIADVACLIYHHKHHLPMAHDSIGNAVFYIANCFANQRKSMAIAKAVSLGGRLA LTATVMTHSYWSGSLGLQPHLLERLNDITYGLMSFTRFGMDGMAMTGMQVSSPLYRLL AQVTPEQRAPE" misc_feature 1488745..1489431 /gene="sseG" /locus_tag="STM1405" /note="pathogenicity island 2 effector protein SseG; Provisional; Region: PRK15357" /db_xref="CDD:185255" gene 1489521..1489743 /gene="ssaG" /locus_tag="STM1406" /db_xref="GeneID:1252924" regulatory 1489521..1489526 /regulatory_class="ribosome_binding_site" /gene="ssaG" /locus_tag="STM1406" /note="putative RBS for ssaG; RegulonDB:STMS1H001640" CDS 1489528..1489743 /gene="ssaG" /locus_tag="STM1406" /note="SsaH (gi|2460267)" /codon_start=1 /transl_table=11 /product="secretion system apparatus" /protein_id="NP_460371.1" /db_xref="GeneID:1252924" /translation="MDIAQLVDMLSHMAHQAGQAINDKMNGNDLLNPESMIKAQFALQ QYSTFINYESSLIKMIKDMLSGIIAKI" misc_feature 1489528..1489740 /gene="ssaG" /locus_tag="STM1406" /note="Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF; Region: T3SS_needle_F; cl09641" /db_xref="CDD:447757" gene 1489778..1490011 /gene="ssaH" /locus_tag="STM1407" /db_xref="GeneID:1252925" regulatory 1489778..1489783 /regulatory_class="ribosome_binding_site" /gene="ssaH" /locus_tag="STM1407" /note="putative RBS for ssaH; RegulonDB:STMS1H001641" CDS 1489784..1490011 /gene="ssaH" /locus_tag="STM1407" /note="SsaH (gi|3776128)" /codon_start=1 /transl_table=11 /product="secretion system apparatus" /protein_id="NP_460372.1" /db_xref="GeneID:1252925" /translation="MFAGVNHSLISQVHAMLPALTVIVPDKKLQLVCLALLLAGLNEP LKAAKILSDIDLPEAMALRLLFPAPNEGFEN" misc_feature 1489784..1490008 /gene="ssaH" /locus_tag="STM1407" /note="type III secretion system protein SsaH; Provisional; Region: PRK15356" /db_xref="CDD:185254" gene 1490023..1490271 /gene="ssaI" /locus_tag="STM1408" /db_xref="GeneID:1252926" CDS 1490023..1490271 /gene="ssaI" /locus_tag="STM1408" /note="SsaI (gi|3776129)" /codon_start=1 /transl_table=11 /product="secretion system apparatus" /protein_id="NP_460373.1" /db_xref="GeneID:1252926" /translation="MSVVPVSTQSYVKSSAEPSQEQINFFEQLLKDEASTSNASALLP QVMLTRQMDYMQLTVGVDYLARISGAASQALNKLDNMA" misc_feature 1490023..1490268 /gene="ssaI" /locus_tag="STM1408" /note="type III secretion system protein SsaI; Provisional; Region: PRK15355" /db_xref="CDD:185253" gene 1490262..1491017 /gene="ssaJ" /locus_tag="STM1409" /db_xref="GeneID:1252927" regulatory 1490262..1490267 /regulatory_class="ribosome_binding_site" /gene="ssaI" /locus_tag="STM1408" /note="putative RBS for ssaJ; RegulonDB:STMS1H001642" CDS 1490268..1491017 /gene="ssaJ" /locus_tag="STM1409" /note="homology with the yscJ/mxiJ/prgK family of lipoproteins; secretion system apparatus lipoprotein SSAJ precursor. (SW:SSAJ_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460374.1" /db_xref="GeneID:1252927" /translation="MKVHRIVFLTVLTFFLTACDVDLYRSLPEDEANQMLALLMQHHI DAEKKQEEDGVTLRVEQSQFINAVELLRLNGYPHRQFTTADKMFPANQLVVSPQEEQQ KINFLKEQRIEGMLSQMEGVINAKVTIALPTYDEGSNASPSSVAVFIKYSPQVNMEAF RVKIKDLIEMSIPGLQYSKISILMQPAEFRMVADVPARQTFWIMDVINANKGKVVKWL MKYPYPLMLSLTGLLLGVGILIGYFCLRRRF" misc_feature 1490268..1491014 /gene="ssaJ" /locus_tag="STM1409" /note="EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein SsaJ; Region: PRK15348" /db_xref="CDD:185246" gene 1491035..1491583 /locus_tag="STM1410" /db_xref="GeneID:1252928" CDS 1491035..1491583 /locus_tag="STM1410" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460375.1" /db_xref="GeneID:1252928" /translation="MLQLYRYFWQPARYAVPEWLDKLGFHLSNCWRYGDRPELDRLLD RALNRLRGSSVIPACLNDRQKRQVRLAPRISAFAFGLGLFKLRCSDYFMLPEYRQLLL QWFSEDEIWQLYGWLGQRDGKLLPPQVMQQTALQIGTAILNREAHDDAVLHALLVLLP PPQRILWPKTSLTEIIFMEHLL" misc_feature 1491038..1491481 /locus_tag="STM1410" /note="Type III secretion system subunit; Region: T3SS_LEE_assoc; pfam13327" /db_xref="CDD:433118" gene 1491574..1492254 /gene="ssaK" /locus_tag="STM1411" /db_xref="GeneID:1252929" regulatory 1491574..1491579 /regulatory_class="ribosome_binding_site" /locus_tag="STM1410" /note="putative RBS for ssaK; RegulonDB:STMS1H001643" CDS 1491580..1492254 /gene="ssaK" /locus_tag="STM1411" /note="secretion system apparatus protein SSAK. (SW:SSAK_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460376.1" /db_xref="GeneID:1252929" /translation="MSFTSLPLTEINHKLPARNIIESQWITLQLTLFAQEQQAKRVSH AIVSSAYRKAEKIIRDAYRYQREQKVEQQQELACLRKNTLEKMEVEWLEQHVKHLQDD ENQFRSLVDHAAHHIKNSIEQVLLAWFDQQSVDSVMCHRLARQATAMAEEGALYLRIH PEKEALMRETFGKRFTLIIEPGFSPDQAELSSTRYAVEFSLSRHFNALLKWLRNGEDK RGSDEY" misc_feature 1491580..1492251 /gene="ssaK" /locus_tag="STM1411" /note="type III secretion system apparatus protein SsaK; Region: PRK15354" /db_xref="CDD:185252" gene 1492216..1493236 /gene="ssaL" /locus_tag="STM1412" /db_xref="GeneID:1252930" regulatory 1492216..1492221 /regulatory_class="ribosome_binding_site" /gene="ssaK" /locus_tag="STM1411" /note="putative RBS for ssaL; RegulonDB:STMS1H001644" CDS 1492220..1493236 /gene="ssaL" /locus_tag="STM1412" /note="secretion system apparatus protein SSAL. (SW:SSAL_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460377.1" /db_xref="GeneID:1252930" /translation="MVKIKEVAMNIKINEIKMTPPTAFTPGQVIEEQEVISPSMLALQ ELQETTGAALYETMEEIGMALSGKLRENYKFTDAEKLERRQQALLRLIKQIQEDNGAT LRPLTEENSDPDLQNAYQIIALAMALTAGGLSKKKKRDLQSQLDTLTAEEGWELAVFS LLELGEVDTATLSSLKRFMQQAIDNDEMPLSQWFRRVADWPDRCERVRILLRAVAFEL SICIEPSEQSRLAAALVRLRRLLLFLGLEKECQREEWICQLPPNTLLPLLLDIICERW LFSDWLLDRLTAIVSSSKMFNRLLQQLDAQFMLIPDNCFNDEDQREQILETLREVKIN QVLF" misc_feature 1492250..1493227 /gene="ssaL" /locus_tag="STM1412" /note="SepL/TyeA/HrpJ family type III secretion system protein; Region: PRK15345" /db_xref="CDD:237949" gene 1493288..1493662 /gene="ssaM" /locus_tag="STM1413" /db_xref="GeneID:1252931" regulatory 1493288..1493293 /regulatory_class="ribosome_binding_site" /gene="ssaM" /locus_tag="STM1413" /note="putative RBS for ssaM; RegulonDB:STMS1H001645" CDS 1493294..1493662 /gene="ssaM" /locus_tag="STM1413" /note="secretion system apparatus protein SSAM. (SW:SSAM_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460378.1" /db_xref="GeneID:1252931" /translation="MDWDLITERNIQLFIQLAGLAERPLATNMFWRQGQYETYLNYHN GRIHLCQILKQTFLDEELLFKALANWKPAAFQGIPQRLFLLRDGLAMSCSPPLSSSAE LWLRLHHRQIKFLESQCVHG" misc_feature 1493294..1493659 /gene="ssaM" /locus_tag="STM1413" /note="type III secretion system apparatus protein; Region: PRK15353" /db_xref="CDD:185251" gene 1493640..1495692 /gene="ssaV" /locus_tag="STM1414" /db_xref="GeneID:1252932" regulatory 1493640..1493645 /regulatory_class="ribosome_binding_site" /gene="ssaM" /locus_tag="STM1413" /note="putative RBS for ssaV; RegulonDB:STMS1H001646" CDS 1493647..1495692 /gene="ssaV" /locus_tag="STM1414" /note="homology with the LcrD family of proteins; secretion system apparatus protein SSAV. (SW:SSAV_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460379.1" /db_xref="GeneID:1252932" /translation="MRSWLGEGVRAQQWLSVCAGRQDMVLATVLLIAIVMMLLPLPTW MVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLLLITTLYRLSLTISTSRLVLLQH NAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITKGIERVAEVSARFSLDGMPGK QMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMKFVKGDTIAGIIVVLVNII GGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLSAGIIVTRVPGEKRQNL ATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLALPIILIRRKKSVVS ANGVEAPEKDSMVPGACPLILRLSPTLHSADLIRDIDAMRWFLFEDTGVPLPEVNIEV LPEPTEKLTVLLYQEPVFSLSIPAQADYLLIGADASVVGDSQTLPNGMGQICWLTKDM AHKAQGFGLDVFAGSQRISALLKCVLLRHMGEFIGVQETRYLMNAMEKNYSELVKELQ RQLPINKIAETLQRLVSERVSIRDLRLIFGTLIDWAPREKDVLMLTEYVRIALRRHIL RRLNPEGKPLPILRIGEGIENLVRESIRQTAMGTYTALSSRHKTQILQLIEQALKQSA KLFIVTSVDTRRFLRKITEATLFDVPILSWQELGEESLIQVVESIDLSEEELADNEE" misc_feature 1493668..1495671 /gene="ssaV" /locus_tag="STM1414" /note="EscV/YscV/HrcV family type III secretion system export apparatus protein; Region: PRK12720" /db_xref="CDD:183699" gene 1495674..1496983 /gene="ssaN" /locus_tag="STM1415" /db_xref="GeneID:1252933" regulatory 1495674..1495679 /regulatory_class="ribosome_binding_site" /gene="ssaN" /locus_tag="STM1415" /note="putative RBS for ssaN; RegulonDB:STMS1H001647" CDS 1495682..1496983 /gene="ssaN" /locus_tag="STM1415" /EC_number="7.1.2.2" /EC_number="2.7.1.40" /note="homology with the YscN family of proteins; probable secretion system apparatus ATP synthase SSAN. (SW:SSAN_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460380.1" /db_xref="GeneID:1252933" /translation="MKNELMQRLRLKYPPPDGYCRWGRIQDVSATLLNAWLPGVFMGE LCCIKPGEELAEVVGINGSKALLSPFTSTIGLHCGQQVMALRRRHQVPVGEALLGRVI DGFGRPLDGRELPDVCWKDYDAMPPPAMVRQPITQPLMTGIRAIDSVATCGEGQRVGI FSAPGVGKSTLLAMLCNAPDADSNVLVLIGERGREVREFIDFTLSEETRKRCVIVVAT SDRPALERVRALFVATTIAEFFRDNGKRVVLLADSLTRYARAAREIALAAGETAVSGE YPPGVFSALPRLLERTGMGEKGSITAFYTVLVEGDDMNEPLADEVRSLLDGHIVLSRR LAERGHYPAIDVLATLSRVFPVVTSHEHRQLAAILRRCLALYQEVELLIRIGEYQRGV DTDTDKAIDTYPDICTFLRQSKDEVCGPELLIEKLHQILTE" misc_feature 1495682..1496980 /gene="ssaN" /locus_tag="STM1415" /note="EscN/YscN/HrcN family type III secretion system ATPase; Region: PRK07594" /db_xref="CDD:136438" gene 1496986..1497363 /gene="ssaO" /locus_tag="STM1416" /db_xref="GeneID:1252934" CDS 1496986..1497363 /gene="ssaO" /locus_tag="STM1416" /note="secretion system apparatus protein SSAO. (SW:SSAO_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460381.1" /db_xref="GeneID:1252934" /translation="METLLEIIARREKQLRGKLTVLDQQQQAIITEQQICQTRALAVS TRLKELMGWQGTLSCHLLLDKKQQMAGLFTQAQSFLTQRQQLENQYQQLVSRRSELQK NFNALMKKKEKITMVLSDAYYQS" misc_feature 1496986..1497360 /gene="ssaO" /locus_tag="STM1416" /note="type III secretion system apparatus protein SsaO; Region: PRK15352" /db_xref="CDD:185250" gene 1497339..1497718 /gene="ssaP" /locus_tag="STM1417" /db_xref="GeneID:1252935" regulatory 1497339..1497344 /regulatory_class="ribosome_binding_site" /gene="ssaO" /locus_tag="STM1416" /note="putative RBS for ssaP; RegulonDB:STMS1H001648" CDS 1497344..1497718 /gene="ssaP" /locus_tag="STM1417" /note="secretion system apparatus protein SSAP. (SW:SSAP_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460382.1" /db_xref="GeneID:1252935" /translation="MRITKVEGSLGLPCQSYQDDNEAEAERMDFEQLMHQALPIGENN PPAALNKNVVFTQRYRVSGGYLDGVECEVCESGGLIQLRINVPHHEIYRSMKALKQWL ESQLLHMGYIISLEIFYVKNSE" misc_feature 1497344..1497715 /gene="ssaP" /locus_tag="STM1417" /note="type III secretion system apparatus protein SsaP; Region: PRK15351" /db_xref="CDD:185249" gene 1497692..1498667 /gene="ssaQ" /locus_tag="STM1418" /db_xref="GeneID:1252936" regulatory 1497692..1497697 /regulatory_class="ribosome_binding_site" /gene="ssaP" /locus_tag="STM1417" /note="putative RBS for ssaQ; RegulonDB:STMS1H001649" CDS 1497699..1498667 /gene="ssaQ" /locus_tag="STM1418" /note="secretion system apparatus protein SSAQ. (SW:SSAQ_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460383.1" /db_xref="GeneID:1252936" /translation="MLRIANEERPWVEILPTQGATIGELTLSMQQYPVQQGTLFTINY HNELGRVWIAEQCWQRWCEGLIGTANRSAIDPELLYGIAEWGLAPLLQASDATLCQNE PPTSCSNLPHQLALHIKWTVEEHEFHSIIFTWPTGFLRNIVGELSAERQQIYPAPPVV VPVYSGWCQLTLIELESIEIGMGVRIHCFGDIRLGFFAIQLPGGIYARVLLTEDNTMK FDELVQDIETLLASGSPMSKSDGTSSVELEQIPQQVLFEVGRASLEIGQLRQLKTGDV LPVGGCFAPEVTIRVNDRIIGQGELIACGNEFMVRITRWYLCKNTA" misc_feature 1497699..1498664 /gene="ssaQ" /locus_tag="STM1418" /note="YscQ/HrcQ family type III secretion apparatus protein; Region: PRK08035" /db_xref="CDD:181204" gene 1498732..1499382 /gene="ssaR" /locus_tag="STM1419" /db_xref="GeneID:1252937" regulatory 1498732..1498737 /regulatory_class="ribosome_binding_site" /gene="ssaR" /locus_tag="STM1419" /note="putative RBS for ssaR; RegulonDB:STMS1H001650" CDS 1498735..1499382 /gene="ssaR" /locus_tag="STM1419" /note="homology with YscR of the secretion system of Yersinia; virulence protein yscr (SW:YSCR_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460384.1" /db_xref="GeneID:1252937" /translation="MSLPDSPLQLIGILFLLSILPLIIVMGTSFLKLAVVFSILRNAL GIQQVPPNIALYGLALVLSLFIMGPTLLAVKERWHPVQVAGAPFWTSEWDSKALAPYR QFLQKNSEEKEANYFRNLIKRTWPEDIKRKIKPDSLLILIPAFTVSQLTQAFRIGLLI YLPFLAIDLLISNILLAMGMMMVSPMTISLPFKLLIFLLAGGWDLTLAQLVQSFS" misc_feature 1498735..1499379 /gene="ssaR" /locus_tag="STM1419" /note="Type III secretory pathway, EscR/YscR component [Intracellular trafficking, secretion, and vesicular transport]; Region: EscR; COG4790" /db_xref="CDD:443819" gene 1499375..1499645 /gene="ssaS" /locus_tag="STM1420" /db_xref="GeneID:1252938" regulatory 1499375..1499380 /regulatory_class="ribosome_binding_site" /gene="ssaS" /locus_tag="STM1420" /note="putative RBS for ssaS; RegulonDB:STMS1H001651" CDS 1499379..1499645 /gene="ssaS" /locus_tag="STM1420" /note="homology with YscS of the secretion system of Yersinia; secretion system apparatus protein SSAS. (SW:SSAS_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus" /protein_id="NP_460385.1" /db_xref="GeneID:1252938" /translation="MNDSELTQFVTQLLWIVLFTSMPVVLVASVVGVIVSLVQALTQI QDQTLQFMIKLLAIAITLMVSYPWLSGILLNYTRQIMLRIGEHG" misc_feature 1499379..1499642 /gene="ssaS" /locus_tag="STM1420" /note="EscS/YscS/HrcS family type III secretion system export apparatus protein; Region: PRK15350" /db_xref="CDD:185248" gene 1499641..1500425 /gene="ssaT" /locus_tag="STM1421" /db_xref="GeneID:1252939" regulatory 1499641..1499646 /regulatory_class="ribosome_binding_site" /gene="ssaT" /locus_tag="STM1421" /note="putative RBS for ssaT; RegulonDB:STMS1H001652" CDS 1499646..1500425 /gene="ssaT" /locus_tag="STM1421" /note="homology with YscT of the secretion system of Yersinia; secretion system apparatus protein SSAT. (SW:SSAT_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460386.1" /db_xref="GeneID:1252939" /translation="MAQQVNEWLIALAVAFIRPLSLSLLLPLLKSGSLGAALLRNGVL MSLTFPILPIIYQQKIMMHIGKDYSWLGLVTGEVIIGFSIGFCAAVPFWAVDMAGFLL DTLRGATMGTIFNSTIEAETSLFGLLFSQFLCVIFFISGGMEFILNILYESYQYLPPG RTLLFDQQFLKYIQAEWRTLYQLCISFSLPAIICMVLADLALGLLNRSAQQLNVFFFS MPLKSILVLLTLLISFPYALHHYLVESDKFYIYLKDWFPSV" misc_feature 1499646..1500422 /gene="ssaT" /locus_tag="STM1421" /note="EscT/YscT/HrcT family type III secretion system export apparatus protein; Region: PRK15349" /db_xref="CDD:185247" gene 1500417..1501480 /gene="ssaU" /locus_tag="STM1422" /db_xref="GeneID:1252940" regulatory 1500417..1500422 /regulatory_class="ribosome_binding_site" /gene="ssaT" /locus_tag="STM1421" /note="putative RBS for ssaU; RegulonDB:STMS1H001653" CDS 1500422..1501480 /gene="ssaU" /locus_tag="STM1422" /note="homology with YscU of the secretion system of Yersinia; secretion system apparatus protein SSAU. (SW:SSAU_SALTY)" /codon_start=1 /transl_table=11 /product="secretion system apparatus protein" /protein_id="NP_460387.1" /db_xref="GeneID:1252940" /translation="MSEKTEQPTEKKLRDGRKEGQVVKSIEITSLFQLIALYLYFHFF TEKMILILIESITFTLQLVNKPFSYALTQLSHALIESLTSALLFLGAGVIVATVGSVF LQVGVVIASKAIGFKSEHINPVSNFKQIFSLHSVVELCKSSLKVIMLSLIFAFFFYYY ASTFRALPYCGLACGVLVVSSLIKWLWVGVMVFYIVVGILDYSFQYYKIRKDLKMSKD DVKQEHKDLEGDPQMKTRRREMQSEIQSGSLAQSVKQSVAVVRNPTHIAVCLGYHPTD MPIPRVLEKGSDAQANYIVNIAERNCIPVVENVELARSLFFEVERGDKIPETLFEPVA ALLRMVMKIDYAHSTETP" misc_feature 1500422..1501468 /gene="ssaU" /locus_tag="STM1422" /note="EscU/YscU/HrcU family type III secretion system export apparatus switch protein; Region: PRK12721" /db_xref="CDD:183700" gene complement(1501631..1501704) /gene="valW" /locus_tag="STM1423" /db_xref="GeneID:1252941" tRNA complement(1501631..1501704) /gene="valW" /locus_tag="STM1423" /product="tRNA-Val" /db_xref="GeneID:1252941" gene complement(1501718..1501791) /gene="valV" /locus_tag="STM1424" /db_xref="GeneID:1252942" tRNA complement(1501718..1501791) /gene="valV" /locus_tag="STM1424" /product="tRNA-Val" /db_xref="GeneID:1252942" gene complement(1501953..1503337) /gene="ydhE" /locus_tag="STM1425" /db_xref="GeneID:1252943" CDS complement(1501953..1503326) /gene="ydhE" /locus_tag="STM1425" /note="similar to E. coli putative transport protein (AAC74735.1); Blastp hit to AAC74735.1 (457 aa), 92% identity in aa 1 - 457" /codon_start=1 /transl_table=11 /product="putative MATE family transport protein" /protein_id="NP_460388.2" /db_xref="GeneID:1252943" /translation="MQKYTSEARQLLALAIPVILAQVAQTAMGFVDTVMAGGYSATDM AAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLV MIVLWNAGYIIRSMHNIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPG MVMGFLGLLVNIPVNYIFIYGHFGMPELGGIGCGVATAAVYWVMFIAMLSYIKHARSM RDIRNEKGFGKPDSVVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQI ALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLGVGICMAVVTAIFTV TLRKHIALLYNDNPEVVALAAQLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFFITF TAYWVLGLPSGYILALTDLVVDRMGPAGFWMGFIIGLTSAAVLMMLRMRYLQRQPSAI ILQRAAR" misc_feature complement(1501956..1503326) /gene="ydhE" /locus_tag="STM1425" /note="multidrug efflux protein; Reviewed; Region: PRK01766" /db_xref="CDD:234981" misc_feature complement(order(1502040..1502042,1502052..1502054, 1502142..1502144,1502223..1502225,1502235..1502237, 1502472..1502474,1502481..1502483,1502559..1502561, 1502571..1502573)) /gene="ydhE" /locus_tag="STM1425" /note="cation binding site [ion binding]; other site" /db_xref="CDD:240536" regulatory complement(1503332..1503337) /regulatory_class="ribosome_binding_site" /gene="ydhE" /locus_tag="STM1425" /note="putative RBS for ydhE; RegulonDB:STMS1H001654" gene 1503529..1504184 /gene="ribE" /locus_tag="STM1426" /db_xref="GeneID:1252944" regulatory 1503529..1503534 /regulatory_class="ribosome_binding_site" /gene="ribE" /locus_tag="STM1426" /note="putative RBS for ribE; RegulonDB:STMS1H001655" CDS 1503543..1504184 /gene="ribE" /locus_tag="STM1426" /EC_number="2.5.1.9" /note="similar to E. coli riboflavin synthase, alpha chain (AAC74734.1); Blastp hit to AAC74734.1 (213 aa), 90% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="riboflavin synthase, alpha chain" /protein_id="NP_460389.1" /db_xref="GeneID:1252944" /translation="MFTGIVQGTAKLVSIDEKPNFRTHVVTLPDYMLEGLETGASVAH NGCCLTVTEINGNQISFDLMKETLRITNLGALRVGDEVNVERAAKFSDEIGGHLMSGH IITTAEIAKILTSENNHQVWFKVQDASLMKYILYKGFIGVDGISLTVGEVTPTRFCVH LIPETLERTTLGRKKLGERVNIEIDPQTQAVVDTVERVLAARENAVRNQADIG" misc_feature 1503543..1504157 /gene="ribE" /locus_tag="STM1426" /note="riboflavin synthase subunit alpha; Provisional; Region: PRK13020" /db_xref="CDD:183846" gene complement(1504226..1505385) /gene="cfa" /locus_tag="STM1427" /db_xref="GeneID:1252945" CDS complement(1504226..1505374) /gene="cfa" /locus_tag="STM1427" /EC_number="2.1.1.79" /note="similar to E. coli cyclopropane fatty acyl phospholipid synthase (AAC74733.1); Blastp hit to AAC74733.1 (382 aa), 90% identity in aa 1 - 382" /codon_start=1 /transl_table=11 /product="cyclopropane fatty acyl phospholipid synthase" /protein_id="NP_460390.1" /db_xref="GeneID:1252945" /translation="MSSSCIEEVSVPDDNWYRIANELLSRADITINGSAPSDIRVKNP DFFKRVLQEGSLGLGESYMDGWWECERLDIFFSKVLRAGLENQLPHHVKDTLRILGAR LINLQSKKRAWIVGKEHYDLGNDLFSRMLDPYMQYSCAYWKDADTLEAAQQAKLKLIC EKLQLQPGMRVLDIGCGWGGLSQYMATHYGVSVVGVTISAEQQKMAQTRCEGLDVSIL LEDYRDLNDQFDRIVSVGMFEHVGPKNYNTYFEVVDRNLKPDGLFLLHTIGSKKTDHN VDPWINKYIFPNGCLPSVRQIAEASESHFVMEDWHNFGADYDTTLMAWHERFINAWPE IAGNYNERFKRMFSYYLNACAGAFRARDIQLWQVVFTRGVENGLRVPR" misc_feature complement(1504229..1505374) /gene="cfa" /locus_tag="STM1427" /note="cyclopropane fatty acyl phospholipid synthase; Region: PRK11705" /db_xref="CDD:183282" regulatory complement(1505380..1505385) /regulatory_class="ribosome_binding_site" /gene="cfa" /locus_tag="STM1427" /note="putative RBS for cfa; RegulonDB:STMS1H001656" gene complement(1505664..1506880) /gene="ydhC" /locus_tag="STM1428" /db_xref="GeneID:1252946" CDS complement(1505664..1506869) /gene="ydhC" /locus_tag="STM1428" /note="similar to E. coli putative transport protein (AAC74732.1); Blastp hit to AAC74732.1 (403 aa), 85% identity in aa 1 - 403" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_460391.1" /db_xref="GeneID:1252946" /translation="MQPGKGFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPAAAVS ASLSLFLAGFAVAQLLWGPLSDRYGRKPILLLGLSIFALGSLGMLWVESAAALLTLRF VQAVGVCAATVIWQALVTDYYPSQKINRIFATIMPLVGLSPALAPLLGSWILTHFSWQ AIFATLFVITLLLMLPALRLKPSGKARTEGQDKLTFATLLRSKTYRGNVLIYAACSAS FFAWLTGSPFILSAMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGYQLLPWLLG LYALSVIATWGAGLLNNASLVEILIPFCVMAIANGAIYPIVVAQALRPFPQATGRAAA LQNTLQLGLCFLASLVVSWLISTPLLTTTSVMLSTVVLAALGYKMQSHADCAETGFPH ANVAHDKSH" misc_feature complement(1505667..1506869) /gene="ydhC" /locus_tag="STM1428" /note="Bcr/CflA family multidrug efflux MFS transporter; Region: PRK11043" /db_xref="CDD:182924" regulatory complement(1506875..1506880) /regulatory_class="ribosome_binding_site" /gene="ydhC" /locus_tag="STM1428" /note="putative RBS for ydhC; RegulonDB:STMS1H001657" gene 1506972..1507914 /gene="ydhB" /locus_tag="STM1429" /db_xref="GeneID:1252947" regulatory 1506972..1506977 /regulatory_class="ribosome_binding_site" /gene="ydhB" /locus_tag="STM1429" /note="putative RBS for ydhB; RegulonDB:STMS1H001658" CDS 1506982..1507914 /gene="ydhB" /locus_tag="STM1429" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74731.1); Blastp hit to AAC74731.1 (310 aa), 90% identity in aa 1 - 310" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_460392.1" /db_xref="GeneID:1252947" /translation="MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWL AVPLFVRRHRDVELTPAGVWFLKEGRSVIKKMQITRQQCQQIANGWRGQLAIAVDNIV RPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATQAIPVGGRYAF RDMGTLSWSCVVASDHPLASMPGPLSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKR VVVPDWESSATCLSAGLCVGMVPTHFARQWIDSGKWVALTLENPFPDAACCVTWQQNE ASPALAWLLDYLGDSETLNREWLREPEEAPDSGD" misc_feature 1506982..1507881 /gene="ydhB" /locus_tag="STM1429" /note="putative DNA-binding transcriptional regulator; Provisional; Region: PRK11074" /db_xref="CDD:182948" gene complement(1507911..1509032) /gene="purR" /locus_tag="STM1430" /db_xref="GeneID:1252948" CDS complement(1507911..1508936) /gene="purR" /locus_tag="STM1430" /note="purine nucleotide synthesis repressor. (SW:PURR_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional repressor for pur regulon, glyA, glnB, prsA, speA (GalR/LacI family)" /protein_id="NP_460393.1" /db_xref="GeneID:1252948" /translation="MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELH YSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLE KQRAYLSMMAQKRVDGLLVMCSEYPEPLLSMLEEYRHIPMVVMDWGEAKADFTDTVID NAFAGGYMAGRYLVERGHRDIGVIPGPLERNTGAGRLAGFMKAMEEALINVPDNWIVQ GDFEPESGYHAMQQILSQSHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSVIGYDN VRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREESQSIEVHPRLVERRSVADG PFRDYRR" misc_feature complement(1507914..1508936) /gene="purR" /locus_tag="STM1430" /note="HTH-type transcriptional repressor PurR; Region: PRK10703" /db_xref="CDD:236739" protein_bind complement(1508889..1508907) /gene="purR" /locus_tag="STM1430" /note="putative binding site for PurR, RegulonDB: STMS1H000348" /bound_moiety="PurR" regulatory complement(1508946..1508951) /regulatory_class="ribosome_binding_site" /gene="purR" /locus_tag="STM1430" /note="putative RBS for purR; RegulonDB:STMS1H001659" protein_bind complement(1508975..1508993) /gene="purR" /locus_tag="STM1430" /note="putative binding site for PurR, RegulonDB: STMS1H000352" /bound_moiety="PurR" regulatory complement(1509008..1509016) /regulatory_class="minus_10_signal" /gene="purR" /locus_tag="STM1430" /note="putative -10_signal for purR; RegulonDB:STMLTH004488" regulatory complement(1509024..1509032) /regulatory_class="minus_35_signal" /gene="purR" /locus_tag="STM1430" /note="putative -35_signal for purR; RegulonDB:STMLTH004488" gene complement(1509404..1509998) /gene="sodB" /locus_tag="STM1431" /db_xref="GeneID:1252949" CDS complement(1509404..1509985) /gene="sodB" /locus_tag="STM1431" /EC_number="1.15.1.1" /note="similar to E. coli superoxide dismutase, iron (AAC74728.1); Blastp hit to AAC74728.1 (193 aa), 94% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="iron superoxide dismutase" /protein_id="NP_460394.1" /db_xref="GeneID:1252949" /translation="MSFELPALPYAKDALAPHISAETLEYHYGKHHQTYVTNLNNLIK GTAFEGKSLEEIVRTSEGGIFNNAAQVWNHTFYWNCLAPNAGGEPTGKLADAIAASFG SFAEFKAQFTDAAIKNFGSGWTWLVKSADGKLAIVSTSNAGTPLTTDATPLLTVDVWE HAYYIDYRNARPNYLEHFWALVNWEFVAKNLAA" misc_feature complement(1509407..1509985) /gene="sodB" /locus_tag="STM1431" /note="superoxide dismutase [Fe]; Region: PRK10543" /db_xref="CDD:182534" regulatory complement(1509993..1509998) /regulatory_class="ribosome_binding_site" /gene="sodB" /locus_tag="STM1431" /note="putative RBS for sodB; RegulonDB:STMS1H001660" gene complement(1510112..1510966) /gene="ydhO" /locus_tag="STM1432" /db_xref="GeneID:1252950" CDS complement(1510112..1510966) /gene="ydhO" /locus_tag="STM1432" /note="similar to E. coli putative lipoprotein (AAC74727.1); Blastp hit to AAC74727.1 (271 aa), 72% identity in aa 1 - 271" /codon_start=1 /transl_table=11 /product="putative cell wall-associated hydrolase" /protein_id="NP_460395.1" /db_xref="GeneID:1252950" /translation="MNRLPLTEDCSVARINKISITLCALLFTTLPFTPMAHASRQAKA TPAVSHVTKTADKKKSTTKKISKTSKKNVKKTSKTSRSSSASTPKRTTASTKSRHTTH RRNRTAPTSIAALDVTEKCTTRKGRKPHCVKGKGTLPVSIADAHRAKVQKATKTAMSK LMNQIGKPYHWGGASPRTGFDCSGLVYYAYKDLVKIRIPRTANEMYHLRDAAPIERSE LKNGDLVFFRTQGRGTADHVGVYVGNGKFIQSPRSGQEIKITSLNEEYWQRHYVGARR VMTPKTIR" misc_feature complement(1510136..1510696) /gene="ydhO" /locus_tag="STM1432" /note="Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis]; Region: NlpC; COG0791" /db_xref="CDD:440554" gene 1511254..1511615 /gene="ydhD" /locus_tag="STM1433" /db_xref="GeneID:1252951" regulatory 1511254..1511259 /regulatory_class="ribosome_binding_site" /gene="ydhD" /locus_tag="STM1433" /note="putative RBS for ydhD; RegulonDB:STMS1H001661" CDS 1511268..1511615 /gene="ydhD" /locus_tag="STM1433" /note="similar to E. coli orf, hypothetical protein (AAC74726.1); Blastp hit to AAC74726.1 (115 aa), 97% identity in aa 1 - 115" /codon_start=1 /transl_table=11 /product="putative glutaredoxin protein" /protein_id="NP_460396.1" /db_xref="GeneID:1252951" /translation="MSTTIEKIQRQIAENPILLYMKGSPKLPSCGFSAQAVQALSACG ERFAYVDILQNPDIRAELPKYANWPTFPQLWVDGELVGGCDIVIEMYQRGELQQLIKE TAAKYKTQEPDAE" misc_feature 1511268..1511612 /gene="ydhD" /locus_tag="STM1433" /note="Grx4 family monothiol glutaredoxin; Region: PRK10824" /db_xref="CDD:182759" misc_feature order(1511331..1511333,1511355..1511363,1511475..1511480) /gene="ydhD" /locus_tag="STM1433" /note="putative GSH binding site [chemical binding]; other site" /db_xref="CDD:239326" misc_feature order(1511355..1511357,1511364..1511366) /gene="ydhD" /locus_tag="STM1433" /note="catalytic residues [active]" /db_xref="CDD:239326" gene complement(1511693..1512340) /gene="rnt" /locus_tag="STM1434" /db_xref="GeneID:1252952" CDS complement(1511693..1512340) /gene="rnt" /locus_tag="STM1434" /EC_number="3.1.13.-" /note="degrades tRNA, has exonuclease and ssDNAse activity; similar to E. coli RNase T, degrades tRNA (AAC74724.1); Blastp hit to AAC74724.1 (215 aa), 90% identity in aa 1 - 209" /codon_start=1 /transl_table=11 /product="RNase T" /protein_id="NP_460397.1" /db_xref="GeneID:1252952" /translation="MSDNAQLSGLCDRFRGFYPVVIDVETAGFNAKTDALLEIAAITL KMDEQGWLMPDMTLHFHVEPFAGANLQPEALAFNGIDPSNPLRGAVSEYEALHAIFKM VRKGIKDSGCSRAIMVAHNATFDHSFMMAAAERASLKRNPFHPFVTFDTAALSGLALG QTVLSKACLAAGMEFDGEKAHSALYDTERTAVLFCEIVNRWKRLGGWPLPLPTDK" misc_feature complement(1511714..1512313) /gene="rnt" /locus_tag="STM1434" /note="DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; Region: DnaQ_like_exo; cl10012" /db_xref="CDD:447876" misc_feature complement(order(1511738..1511740,1511858..1511863, 1511870..1511875,1511882..1511884,1511891..1511905, 1511972..1511974,1512296..1512298,1512302..1512304)) /gene="rnt" /locus_tag="STM1434" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99837" misc_feature complement(order(1511783..1511785,1511798..1511800, 1511966..1511974,1511978..1511983,1512257..1512259, 1512263..1512274)) /gene="rnt" /locus_tag="STM1434" /note="putative active site [active]" /db_xref="CDD:99837" misc_feature complement(order(1511783..1511785,1511798..1511800, 1511969..1511974,1511978..1511983,1512257..1512259, 1512263..1512274)) /gene="rnt" /locus_tag="STM1434" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:99837" misc_feature complement(order(1511783..1511785,1511798..1511800, 1511966..1511968,1512266..1512268,1512272..1512274)) /gene="rnt" /locus_tag="STM1434" /note="catalytic site [active]" /db_xref="CDD:99837" gene complement(1512441..1512861) /gene="gloA" /locus_tag="STM1435" /db_xref="GeneID:1252953" CDS complement(1512441..1512848) /gene="gloA" /locus_tag="STM1435" /EC_number="4.4.1.5" /note="lactoylglutathione lyase. (SW:LGUL_SALTY); nickel isomerase" /codon_start=1 /transl_table=11 /product="glyoxalase I" /protein_id="NP_460398.1" /db_xref="GeneID:1252953" /translation="MRLLHTMLRVGDLQRSIAFYTNVLGMKLLRTSENPEYKYSLAFV GYGPETEEAVIELTYNWGVESYDMGNAYGHIALSVDNAAEACERIRQNGGNVTREAGP VKGGSTIIAFVEDPDGYKIELIEAKDAGRGLGN" misc_feature complement(1512444..1512845) /gene="gloA" /locus_tag="STM1435" /note="lactoylglutathione lyase; Region: glyox_I; TIGR00068" /db_xref="CDD:272886" misc_feature complement(order(1512477..1512479,1512483..1512485, 1512492..1512494,1512609..1512611,1512615..1512638, 1512642..1512653,1512681..1512692,1512711..1512713, 1512777..1512779,1512822..1512842)) /gene="gloA" /locus_tag="STM1435" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:319965" misc_feature complement(order(1512483..1512485,1512489..1512491, 1512513..1512515,1512519..1512521,1512555..1512557, 1512627..1512629,1512669..1512671,1512675..1512677, 1512681..1512683,1512726..1512728,1512732..1512734, 1512747..1512749,1512822..1512824,1512834..1512836)) /gene="gloA" /locus_tag="STM1435" /note="active site" /db_xref="CDD:319965" misc_feature complement(order(1512489..1512491,1512513..1512515, 1512519..1512521,1512555..1512557,1512669..1512671, 1512675..1512677,1512726..1512728,1512732..1512734, 1512747..1512749,1512822..1512824)) /gene="gloA" /locus_tag="STM1435" /note="glutathione binding site [chemical binding]; other site" /db_xref="CDD:319965" regulatory complement(1512856..1512861) /regulatory_class="ribosome_binding_site" /gene="gloA" /locus_tag="STM1435" /note="putative RBS for gloA; RegulonDB:STMS1H001662" gene complement(1512917..1514025) /gene="nemA" /locus_tag="STM1436" /db_xref="GeneID:1252954" CDS complement(1512917..1514014) /gene="nemA" /locus_tag="STM1436" /EC_number="1.-.-.-" /note="similar to E. coli N-ethylmaleimide reductase (AAC74722.1); Blastp hit to AAC74722.1 (365 aa), 92% identity in aa 1 - 365" /codon_start=1 /transl_table=11 /product="N-ethylmaleimide reductase" /protein_id="NP_460399.1" /db_xref="GeneID:1252954" /translation="MSSAKLFTPLKVGAITATNRVFMAPLTRLRSIEPGDIPTPLMAE YYRQRASAGLIISEATQISAQAKGYAGAPGLHSDEQIAAWKKITQGVHAQGGHMAVQL WHTGRISHASLQPGGQAPVAPSAINAGTRTSLRDENGQAIRVETSTPRALDTHEIPGI VNDFRQAIANAREAGFDLVELHSAHGYLLHQFLSPSSNHRTDRYGGGVENRARLVLEV VDAGIKEWGADRIGIRLSPVGTFQNVDNGPNEEADALYLIEALGKRGIAYLHMSEPDW AGGEPYSDAFREKVRARFHGPIIGAGAYTPEKAEDLIEKGLIDAVAFGRDYIANPDLV ARLQRKAELNPQRPESFYGGGAEGYTDYPTL" misc_feature complement(1512920..1514005) /gene="nemA" /locus_tag="STM1436" /note="N-ethylmaleimide reductase; Provisional; Region: PRK10605" /db_xref="CDD:182584" misc_feature complement(order(1513037..1513045,1513049..1513051, 1513109..1513111,1513313..1513315,1513712..1513714, 1513838..1513840,1513934..1513936,1513940..1513942)) /gene="nemA" /locus_tag="STM1436" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:239243" misc_feature complement(order(1513040..1513045,1513049..1513051, 1513109..1513111,1513292..1513294,1513313..1513315, 1513454..1513456,1513460..1513462,1513469..1513471, 1513685..1513687,1513706..1513708,1513712..1513714, 1513838..1513840,1513934..1513936,1513940..1513942)) /gene="nemA" /locus_tag="STM1436" /note="active site" /db_xref="CDD:239243" misc_feature complement(order(1513040..1513042,1513454..1513456, 1513460..1513462,1513469..1513471,1513706..1513708, 1513934..1513936)) /gene="nemA" /locus_tag="STM1436" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:239243" misc_feature complement(1513454..1513456) /gene="nemA" /locus_tag="STM1436" /note="catalytic residue [active]" /db_xref="CDD:239243" regulatory complement(1514020..1514025) /regulatory_class="ribosome_binding_site" /gene="nemA" /locus_tag="STM1436" /note="putative RBS for nemA; RegulonDB:STMS1H001663" gene complement(1514073..1514672) /gene="ydhM" /locus_tag="STM1437" /db_xref="GeneID:1252955" CDS complement(1514073..1514672) /gene="ydhM" /locus_tag="STM1437" /note="similar to E. coli orf, hypothetical protein (AAC74721.1); Blastp hit to AAC74721.1 (199 aa), 83% identity in aa 1 - 197" /codon_start=1 /transl_table=11 /product="putative TetR/AcrR family transcriptional repressor" /protein_id="NP_460400.1" /db_xref="GeneID:1252955" /translation="MNKQTEHDTREHLLATGEQLCMQRGFTGMGLSELLKTAQVPKGS FYHYFRSKEAFGVAMLERHYACYHQRLTAHFTSGPGNHRDRLLAWYQETLKQFCQQGA ISGCLTVKLSAEVCDLSEDMRSTMDKGAQEIMALLARALEDGRNSHCLHFTGQPLPQA QVLYALWLGANLQAKISRSAAPLENALAHVKTIIATPEQ" misc_feature complement(1514166..1514651) /gene="ydhM" /locus_tag="STM1437" /note="DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:440920" gene 1514764..1515014 /gene="ydhL" /locus_tag="STM1438" /db_xref="GeneID:1252956" regulatory 1514764..1514769 /regulatory_class="ribosome_binding_site" /gene="ydhL" /locus_tag="STM1438" /note="putative RBS for ydhL; RegulonDB:STMS1H001664" CDS 1514775..1515014 /gene="ydhL" /locus_tag="STM1438" /note="similar to E. coli orf, hypothetical protein (AAC74720.1); Blastp hit to AAC74720.1 (125 aa), 83% identity in aa 47 - 125" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_460401.1" /db_xref="GeneID:1252956" /translation="MAEQLEFFPVASPCRGICQSDERGFCRGCMRSRDERFNWQKMSD VEKQNVLRLCRQRFLRKIRANKPLPSEDPQQPSLF" misc_feature 1514799..1514945 /gene="ydhL" /locus_tag="STM1438" /note="Predicted Fe-S protein YdhL, DUF1289 family [General function prediction only]; Region: YdhL; COG3313" /db_xref="CDD:442542" gene 1515053..1515961 /gene="ydhF" /locus_tag="STM1439" /db_xref="GeneID:1252957" regulatory 1515053..1515058 /regulatory_class="ribosome_binding_site" /gene="ydhF" /locus_tag="STM1439" /note="putative RBS for ydhF; RegulonDB:STMS1H001665" CDS 1515065..1515961 /gene="ydhF" /locus_tag="STM1439" /note="similar to E. coli orf, hypothetical protein (AAC74719.1); Blastp hit to AAC74719.1 (298 aa), 89% identity in aa 1 - 298" /codon_start=1 /transl_table=11 /product="putative aldo/keto reductase" /protein_id="NP_460402.1" /db_xref="GeneID:1252957" /translation="MVQRVTIAPQGPEFSRFVMGYWRLMDWNMSARQLVSFIEEHLDL GVTTVDHADIYGGYQCEAAFGEALTLAPHLREKLQIVTKCGIATTARAENKLGHYITD RRHIILSAEQSLKNLATDYLDMLLIHRPDPLMDADDVAEAFQHLHQSGKVRHFGVSNF TPAQFTLLQSRLPFTLATNQVEISPVHQPLLLDGTLDQLQQLRIRPMAWSCLGGGRLF NDEAYQPLRQELSVIAQELNASSIEQVVYAWILRLPSQPLPIIGSGKIERVRAALEAE TLSLTRQQWFRIRKAALGYDVP" misc_feature 1515071..1515958 /gene="ydhF" /locus_tag="STM1439" /note="Predicted oxidoreductase YdhF [General function prediction only]; Region: YdhF; COG4989" /db_xref="CDD:444013" gene 1516033..1516562 /gene="sodC" /locus_tag="STM1440" /db_xref="GeneID:1252958" regulatory 1516033..1516038 /regulatory_class="ribosome_binding_site" /gene="sodC" /locus_tag="STM1440" /note="putative RBS for sodC; RegulonDB:STMS1H001666" CDS 1516041..1516562 /gene="sodC" /locus_tag="STM1440" /EC_number="1.15.1.1" /note="similar to E. coli superoxide dismutase precursor (Cu-Zn) (AAC74718.1); Blastp hit to AAC74718.1 (173 aa), 82% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="copper/zinc superoxide dismutase" /protein_id="NP_460403.1" /db_xref="GeneID:1252958" /translation="MKRLSLAMVTLLACAGAQAASEKVEMNLVTAQGVGQSIGTVVID ETEGGLKFTPHLKALPPGEHGFHIHANGSCQPAIKDGKAVAAEAAGGHLDPQNTGKHE GPEGQGHLGDLPVLVVNNDGIASEPVTAPRLKSLDEVKDKALMIHVGGDNMSDQPKPL GGGGMRYACGVIK" misc_feature 1516041..1516559 /gene="sodC" /locus_tag="STM1440" /note="superoxide dismutase [Cu-Zn] SodC2; Region: PRK10290" /db_xref="CDD:182357" misc_feature order(1516191..1516193,1516389..1516391) /gene="sodC" /locus_tag="STM1440" /note="P-class dimer interface [polypeptide binding]; other site" /db_xref="CDD:238186" misc_feature order(1516239..1516241,1516245..1516247,1516314..1516316, 1516365..1516367,1516374..1516376,1516479..1516481) /gene="sodC" /locus_tag="STM1440" /note="active site" /db_xref="CDD:238186" misc_feature order(1516239..1516241,1516245..1516247,1516314..1516316, 1516479..1516481) /gene="sodC" /locus_tag="STM1440" /note="Cu2+ binding site [ion binding]; other site" /db_xref="CDD:238186" misc_feature order(1516314..1516316,1516341..1516343,1516365..1516367, 1516374..1516376) /gene="sodC" /locus_tag="STM1440" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238186" gene complement(1516538..1518583) /locus_tag="STM1441" /db_xref="GeneID:1252959" CDS complement(1516538..1518577) /locus_tag="STM1441" /note="similar to E. coli orf, hypothetical protein (AAC74717.1); Blastp hit to AAC74717.1 (670 aa), 84% identity in aa 1 - 669" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460404.1" /db_xref="GeneID:1252959" /translation="MKLSLPALRNTPWFKATSGQWRYALRNTIAMCLALTFAYYLNLD EPYWAMTSAAVVSFPTVGGVISKSLGRIAGSLLGATAALIIAGHTLNEPWLFLFSMAA WIGFCTWACAHFTNNAAYAFQLSGYTAAIIAFPMVNIVEITQLWDIAQARVCEVIVGI LCGGMMMMILPSTSDGTALLTAFKNMHARLLEHASLLWQPETTDAIRSAHEGVIGQIL TMNLLRIQAFWSHYRFRRQNALLNALLHQQLRLTSVISSLRRMLLNWPTPPENSREVI EQLLAELAKPRADSYTVAQIIAPLRPQDEQDYRHLAFWQRLRYFCQLYLRSSRQLYLI ESGAPVDQIHIRRTPGLARHTDNAEAIWSGVRTFCTLTVIGAWSIGAQWESGPGALTL AAISCVLYSIVATPFKSLSLLMRTLVLLSLFSFVVKFGLMVQITDLWQFLLFLFPLFV TMQLLKLQMPKLAGLWGQLIVFMGSFIAVTNPPVYDFADFLNDNTAKIVGVAISWLAF AILRPGSDAVKSRRHIRALRRDFVDQLSRHPSHNESEFESLTYHHVSQLSNSQDALAR RWLLRWGVVLLNCSHVVWQLRAWESRSDPLSRVRDICISLLRDVMSERGVQQRPLAVT LQELQRICDTLAHHHQPAAHELAAIIWRLHCSLSQLEQAPAQGTLAPGYLMTPQA" misc_feature complement(1516586..1518517) /locus_tag="STM1441" /note="Fusaric acid resistance protein family; Region: FUSC; pfam04632" /db_xref="CDD:428044" gene complement(1518577..1519473) /gene="ydhJ" /locus_tag="STM1442" /db_xref="GeneID:1252960" CDS complement(1518577..1519473) /gene="ydhJ" /locus_tag="STM1442" /note="similar to E. coli putative membrane protein (AAC74716.1); Blastp hit to AAC74716.1 (299 aa), 83% identity in aa 9 - 299" /codon_start=1 /transl_table=11 /product="putative multidrug resistance efflux pump" /protein_id="NP_460405.1" /db_xref="GeneID:1252960" /translation="MSGPRFTDRVVNMSLKTIKYFSTLIVAVVAVLAAWWLWNYYMQS PWTRDGKIRAEQVSVTPQVSGSITQLNIKDNQFVNAGDVLFVIDKTPFHIAELNAQAQ LAKAQSDLAKANNEADRRRHLSRNYISAEDLDSANLNVKAMQANVDVALATLKQAQWQ LSQTEVKAPVSGWVTNLSTRTGDYASTGKPLFALVDSHSFYVMGYFEETKLRHIREGE PALITLYSGNVKLQGHVGSIGRAIYDQSVESDSGLVPDIKPNVPWVRLAQRVPVRIEF DALPQDITLVSGTTCSVAIGQR" misc_feature complement(1518586..1519356) /gene="ydhJ" /locus_tag="STM1442" /note="p-hydroxybenzoic acid efflux pump subunit AaeA; Region: PRK10559" /db_xref="CDD:182548" regulatory complement(1518578..1518583) /regulatory_class="ribosome_binding_site" /gene="ydhJ" /locus_tag="STM1442" /note="putative RBS for STM1441; RegulonDB:STMS1H001667" gene complement(1519440..1519690) /gene="ydhI" /locus_tag="STM1443" /db_xref="GeneID:1252961" CDS complement(1519440..1519676) /gene="ydhI" /locus_tag="STM1443" /note="similar to E. coli orf, hypothetical protein (AAC74715.1); Blastp hit to AAC74715.1 (78 aa), 76% identity in aa 1 - 78" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460406.1" /db_xref="GeneID:1252961" /translation="MKCILNATGLPLQDLMLGASVYFPPFFKAFALGFVIWLFIHRLL RDRIYSDEIWHPLLMDLSLFTLCVCLGLVLLIAW" misc_feature complement(1519485..1519622) /gene="ydhI" /locus_tag="STM1443" /note="Protein of unknown function (DUF1656); Region: DUF1656; pfam07869" /db_xref="CDD:429704" regulatory complement(1519685..1519690) /regulatory_class="ribosome_binding_site" /gene="ydhI" /locus_tag="STM1443" /note="putative RBS for ydhI; RegulonDB:STMS1H001668" gene 1519865..1520311 /gene="slyA" /locus_tag="STM1444" /db_xref="GeneID:1252962" regulatory 1519865..1519870 /regulatory_class="ribosome_binding_site" /gene="slyA" /locus_tag="STM1444" /note="putative RBS for slyA; RegulonDB:STMS1H001669" CDS 1519871..1520311 /gene="slyA" /locus_tag="STM1444" /note="transcriptional regulator SLYA (salmolysin) (cytolysin SLYA). (SW:SLYA_SALTY)" /codon_start=1 /transl_table=11 /product="MarR family transcriptional regulator for hemolysin" /protein_id="NP_460407.3" /db_xref="GeneID:1252962" /translation="MKLESPLGSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNIHQ LPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI AEMEEVIHKTRGEILAGISSEEIELLIKLIAKLEHNIMELHSHD" misc_feature 1519877..1520308 /gene="slyA" /locus_tag="STM1444" /note="transcriptional regulator SlyA; Provisional; Region: PRK03573" /db_xref="CDD:179596" gene complement(1520359..1520840) /gene="slyB" /locus_tag="STM1445" /db_xref="GeneID:1252963" CDS complement(1520359..1520826) /gene="slyB" /locus_tag="STM1445" /note="outer membrane lipoprotein SLYB precursor. (SW:SLYB_SALTY)" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460408.1" /db_xref="GeneID:1252963" /translation="MIKRVLAVSLMGLSLAGCVNNDSLSGDVYTASEAKQVQNVTYGT IVNVRPVQIQGGDDSNVIGAIGGAVLGGFLGNTIGGGTGRSLATAAGAVAGGVAGQGV QSAMNKTQGVELEIRKDDGNTIMVVQKQGNTRFSAGQRVVLASNGSQVTVSPR" misc_feature complement(1520362..1520826) /gene="slyB" /locus_tag="STM1445" /note="Outer membrane lipoprotein SlyB [Cell wall/membrane/envelope biogenesis]; Region: SlyB; COG3133" /db_xref="CDD:442367" regulatory complement(1520835..1520840) /regulatory_class="ribosome_binding_site" /gene="slyB" /locus_tag="STM1445" /note="putative RBS for slyB; RegulonDB:STMS1H001670" gene 1521087..1522219 /gene="ydhH" /locus_tag="STM1446" /db_xref="GeneID:1252964" regulatory 1521087..1521092 /regulatory_class="ribosome_binding_site" /gene="ydhH" /locus_tag="STM1446" /note="putative RBS for ydhH; RegulonDB:STMS1H001671" CDS 1521098..1522219 /gene="ydhH" /locus_tag="STM1446" /note="similar to E. coli orf, hypothetical protein (AAC74712.1); Blastp hit to AAC74712.1 (369 aa), 84% identity in aa 1 - 369" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460409.1" /db_xref="GeneID:1252964" /translation="MKSGRFIGVMSGTSLDGVDVVLAAIDETMVAQQASLTWPIPVHL KKGILDICQGQPLTLSQLGQLDTQLGRLFAQAVNALLAQQRLQPRDIVAIGCHGQTVW HEPTGEAPHTLQIGDNNHIVAHTGITVVGDFRRRDIALGGQGAPLVPAFHHALLGHPT EKRMVLNIGGIANLSLLFPGQAVRGYDTGPGNMLMDAWIWRQCAQPYDKDAAWAKEGQ VILPLLQKMLRDPYFAASAPKSTGREYFNYGWLERHLAAFPGADARDVQATLAELTAV SIAQQVLLNGGCERLMVCGGGGRNPLVMARLAALLPGIEVSTTDKAGISGDDMEALAF AWLAWRTLAGLPGNLPSVTGATEASVLGAIYPANPITQS" misc_feature 1521107..1522198 /gene="ydhH" /locus_tag="STM1446" /note="Anhydro-N-acetylmuramic acid kinase; Region: AnmK; pfam03702" /db_xref="CDD:397660" gene 1522289..1522636 /gene="ydhA" /locus_tag="STM1447" /db_xref="GeneID:1252965" regulatory 1522289..1522294 /regulatory_class="ribosome_binding_site" /gene="ydhA" /locus_tag="STM1447" /note="putative RBS for ydhA; RegulonDB:STMS1H001672" CDS 1522307..1522636 /gene="ydhA" /locus_tag="STM1447" /note="similar to E. coli orf, hypothetical protein (AAC74711.1); Blastp hit to AAC74711.1 (82 aa), 90% identity in aa 1 - 82" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460410.1" /db_xref="GeneID:1252965" /translation="MPMKKIAIMCLPVLLTGCSVYQQFVERMQTDTLEYQCDEKPLTV KVNNPREEVSFVYDNKLLTLKQGISASGARYTDGIYVFWSQGESATVYKRDRIVLNNC QLQNPKR" misc_feature 1522307..1522633 /gene="ydhA" /locus_tag="STM1447" /note="C-type lysozyme inhibitor; Region: PRK11372" /db_xref="CDD:236902" gene 1522695..1523351 /gene="pdxH" /locus_tag="STM1448" /db_xref="GeneID:1252966" CDS 1522695..1523351 /gene="pdxH" /locus_tag="STM1448" /EC_number="1.4.3.5" /note="similar to E. coli pyridoxinephosphate oxidase (AAC74710.1); Blastp hit to AAC74710.1 (218 aa), 91% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="pyridoxine 5'-phosphate oxidase" /protein_id="NP_460411.1" /db_xref="GeneID:1252966" /translation="MSDNDQLQQIAHLRREYTKGGLRRRDLPAEPLTLFERWLGQACD ARLADPTAMVVATVDDKGQPYQRIVLLKHYDEKGLVFYTNLGSRKAHQIEHNPRISLL FPWHMLERQVMVTGKAERLSTLEVVRYFHSRPRDSQIGAWVSKQSSRISARGILESKF LELKQKFQQGEVPLPSFWGGFRVSIEQMEFWQGGEHRLHDRFLYQRDDGAWKIDRLAP " misc_feature 1522764..1523348 /gene="pdxH" /locus_tag="STM1448" /note="pyridoxal 5'-phosphate synthase; Region: PRK05679" /db_xref="CDD:235555" gene 1523466..1524752 /gene="tyrS" /locus_tag="STM1449" /db_xref="GeneID:1252967" regulatory 1523466..1523471 /regulatory_class="ribosome_binding_site" /gene="tyrS" /locus_tag="STM1449" /note="putative RBS for tyrS; RegulonDB:STMS1H001673" CDS 1523478..1524752 /gene="tyrS" /locus_tag="STM1449" /EC_number="6.1.1.1" /note="similar to E. coli tyrosine tRNA synthetase (AAC74709.1); Blastp hit to AAC74709.1 (424 aa), 96% identity in aa 1 - 424" /codon_start=1 /transl_table=11 /product="tyrosine tRNA synthetase" /protein_id="NP_460412.1" /db_xref="GeneID:1252967" /translation="MASSNLIKQLQERGLVAQVTDEDALAERLAQGPIALYCGFDPTA DSLHLGHLVPLLCLKRFQQAGHKPVALVGGATGLIGDPSFKAAERKLNTEETVQEWVA KIRKQVAPFLDFDCGENSAIAANNYDWFGSMNVLTFLRDIGKHFSVNQMINKEAVKQR LNRDDQGISFTEFSYNLLQGYDFACLNKLHGVALQIGGSDQWGNITSGIDLTRRLHQN QVFGLTVPLITKADGTKFGKTEGGAVWLDPKKTSPYKFYQFWINTADADVYRFLKFFT FMDIEEINALEEEDKNSGKAPRAQYVLAEQVTRLVHGEEGLVAAKRITECLFSGSLSA LSEADFEQLAQDGVPMVEMEKGADLMQALVDAELQPSRGQARKTIASNAVTINGEKQS DPEYIFNDEDRLFGRYTLLRRGKKNYCLICWK" misc_feature 1523487..1524749 /gene="tyrS" /locus_tag="STM1449" /note="Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: TyrS; COG0162" /db_xref="CDD:439932" gene 1524801..1525672 /gene="pdxY" /locus_tag="STM1450" /db_xref="GeneID:1252968" regulatory 1524801..1524806 /regulatory_class="ribosome_binding_site" /gene="pdxY" /locus_tag="STM1450" /note="putative RBS for pdxY; RegulonDB:STMS1H001674" CDS 1524812..1525672 /gene="pdxY" /locus_tag="STM1450" /EC_number="2.7.1.35" /note="similar to E. coli pyridoxal kinase 2 / pyridoxine kinase (AAC74708.1); Blastp hit to AAC74708.1 (287 aa), 90% identity in aa 2 - 287" /codon_start=1 /transl_table=11 /product="pyridoxal kinase 2" /protein_id="NP_460413.1" /db_xref="GeneID:1252968" /translation="MKNILAIQSHVVFGHAGNSAAEFPMRRLGANVWPLNTVQFSNHT QYGKWTGCVMPPSHLTEIVQGIADIGQLAHCDAVLSGYLGSAEQGEHILGIVRQVKAA NPQAKYFCDPVMGHPEKGCIVAPGVAEFHVRYALPASDIIAPNLIELEILSKHSVNNV DDAVQAARELIAQGPEIVLVKHLARAGYSSERFEMLLVTAQEAWHISRPLVDFGSRQP VGVGDVTSGLLLVKLLQGATLQQALEHVTAAVYEIMIATKTMQEYELQVVAAQDRIAN PEHYFSATRL" misc_feature 1524812..1525669 /gene="pdxY" /locus_tag="STM1450" /note="pyridoxal kinase PdxY; Region: PRK05756" /db_xref="CDD:235592" misc_feature order(1524818..1524820,1524839..1524841,1524845..1524850, 1524854..1524856,1524866..1524868,1524878..1524880, 1524887..1524889,1524902..1524919,1524926..1524928, 1524935..1524937,1524962..1524967,1524971..1524973, 1524992..1524997,1525016..1525018) /gene="pdxY" /locus_tag="STM1450" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238578" misc_feature order(1524836..1524838,1524857..1524862,1524929..1524931, 1524938..1524943,1524956..1524958,1525055..1525057, 1525061..1525063,1525466..1525471,1525478..1525480) /gene="pdxY" /locus_tag="STM1450" /note="pyridoxal binding site [chemical binding]; other site" /db_xref="CDD:238578" misc_feature order(1525142..1525144,1525157..1525159,1525238..1525240, 1525244..1525246,1525253..1525255,1525352..1525357, 1525388..1525390,1525433..1525435,1525439..1525444, 1525463..1525465,1525472..1525480,1525484..1525486, 1525559..1525561,1525571..1525573) /gene="pdxY" /locus_tag="STM1450" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238578" gene complement(1525731..1526348) /gene="gst" /locus_tag="STM1451" /db_xref="GeneID:1252969" CDS complement(1525731..1526336) /gene="gst" /locus_tag="STM1451" /EC_number="2.5.1.18" /note="similar to E. coli glutathionine S-transferase (AAC74707.1); Blastp hit to AAC74707.1 (201 aa), 84% identity in aa 1 - 200" /codon_start=1 /transl_table=11 /product="glutathionine S-transferase" /protein_id="NP_460414.1" /db_xref="GeneID:1252969" /translation="MKLFYKPGACSLASHITLREIGKDFTLDGVDLAKKRLENGDDYL AVNPKGQVPALLLDDGTLLTEGVAIMQYLADSVPDRQLLAPVSSLARYHTLEWLNYIA TELHKGFTPLFRPDTPETLKPAVRAGLEKKLQYVDESLSDDQWICGQRFTIADAYLFT VLRWAYGVKLNMDGLTHIESYMQRVAKRPTVAAALKAEGLN" misc_feature complement(1525734..1526336) /gene="gst" /locus_tag="STM1451" /note="glutathionine S-transferase; Provisional; Region: PRK10542" /db_xref="CDD:182533" regulatory complement(1526343..1526348) /regulatory_class="ribosome_binding_site" /gene="gst" /locus_tag="STM1451" /note="putative RBS for gst; RegulonDB:STMS1H001675" gene complement(1526441..1527955) /gene="ydgR" /locus_tag="STM1452" /db_xref="GeneID:1252970" CDS complement(1526441..1527946) /gene="ydgR" /locus_tag="STM1452" /note="similar to E. coli putative transport protein (AAC74706.1); Blastp hit to AAC74706.1 (500 aa), 90% identity in aa 1 - 498" /codon_start=1 /transl_table=11 /product="putative POT family peptide transport protein" /protein_id="NP_460415.1" /db_xref="GeneID:1252970" /translation="MSTANKKPTESVSLNAFKQPKAFYLIFSIELWERFGYYGLQGIM AVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKILGTKRVIMLGAVVLAIGY ALVAWSGHDAGIVYMGMAAIAVGNGLFKANPSSLLSTCYAKDDPRLDGAFTMYYMSVN IGSFFSMLATPWLAARYGWSTAFALSVVGMLITVVNFAFCQRWVKSYGSKPDFEPINF RNLLLTIVGIVVLIAVATWLLHNQDIARMVLGVIALGIVIIFGKEAFSMHGAARRKMI VAFILMLQAIIFFVLYSQMPTSLNFFAIRNVEHSILGIAFEPEQYQALNPFWIIIGSP ILAAIYNRMGDTLPMPMKFAIGMVLCSGAFLILPLGAKFANDAGIVSVNWLIASYGLQ SIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGANIIGGYVANLMAVPSDVTDP LMSLEVYGRVFMQIGIATAVIAVLMLLTAPKLNRMTQDDDTAEKGSKAATV" misc_feature complement(1526444..1527946) /gene="ydgR" /locus_tag="STM1452" /note="dipeptide/tripeptide permease DtpA; Region: tppB; PRK09584" /db_xref="CDD:181969" misc_feature complement(order(1526759..1526761,1526960..1526962, 1526969..1526974,1527071..1527073,1527458..1527460, 1527467..1527472,1527479..1527481,1527557..1527559, 1527833..1527835,1527845..1527847)) /gene="ydgR" /locus_tag="STM1452" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340904" regulatory complement(1527950..1527955) /regulatory_class="ribosome_binding_site" /gene="ydgR" /locus_tag="STM1452" /note="putative RBS for ydgR; RegulonDB:STMS1H001676" gene complement(1528548..1529196) /gene="nth" /locus_tag="STM1453" /db_xref="GeneID:1252971" CDS complement(1528548..1529183) /gene="nth" /locus_tag="STM1453" /EC_number="4.2.99.18" /note="similar to E. coli endonuclease III; specific for apurinic and/or apyrimidinic sites (AAC74705.1); Blastp hit to AAC74705.1 (211 aa), 95% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="DNA glycosylase/apyrimidinic (AP) lyase" /protein_id="NP_460416.1" /db_xref="GeneID:1252971" /translation="MNKAKRLEILTRLRDNNPHPTTELNFTSPFELLIAVLLSAQATD VSVNKATAKLYPVANTPAAMLELGVEGVKSYIKTIGLFNSKAENVIKTCRILLDKHNG EVPEDRAALEALPGVGRKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVE EKLLKVVPNEFKVDCHHWLILHGRYTCIARKPRCGSCLIEDLCEYKEKVDI" misc_feature complement(1528551..1529183) /gene="nth" /locus_tag="STM1453" /note="endonuclease III; Provisional; Region: PRK10702" /db_xref="CDD:182661" gene complement(1529183..1529888) /gene="ydgQ" /locus_tag="STM1454" /db_xref="GeneID:1252972" CDS complement(1529183..1529875) /gene="ydgQ" /locus_tag="STM1454" /note="similar to E. coli orf, hypothetical protein (AAC74704.1); Blastp hit to AAC74704.1 (231 aa), 91% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="putative membrane NADH-quinone reductase protein" /protein_id="NP_460417.1" /db_xref="GeneID:1252972" /translation="MSEIKDIVVQGLWKNNSALVQLLGLCPLLAVTSTATNALGLGLA TTLVLTLTNLTVSALRRWTPAEIRIPIYVMIIASVVSAVQMLINAYAFGLYQSLGIFI PLIVTNCIVVGRAEAFAAKKGPWLSALDGFSIGMGATGAMFVLGSLREILGNGTLFDG ADSLLGGWAKVLRVEIFHTDSPFLLAMLPPGAFIGLGLMLAVKYLIDEKMKKRRAETA PSAVPAGETGKV" misc_feature complement(1529186..1529875) /gene="ydgQ" /locus_tag="STM1454" /note="electron transport complex RsxE subunit; Provisional; Region: PRK12405" /db_xref="CDD:237091" regulatory complement(1529191..1529196) /regulatory_class="ribosome_binding_site" /gene="nth" /locus_tag="STM1453" /note="putative RBS for nth; RegulonDB:STMS1H001677" gene complement(1529878..1530509) /gene="ydgP" /locus_tag="STM1455" /db_xref="GeneID:1252973" CDS complement(1529878..1530498) /gene="ydgP" /locus_tag="STM1455" /note="similar to E. coli orf, hypothetical protein (AAC74703.1); Blastp hit to AAC74703.1 (206 aa), 84% identity in aa 1 - 206" /codon_start=1 /transl_table=11 /product="putative Na+-transporting NADH:ubiquinone oxidoreductase gamma subunit" /protein_id="NP_460418.1" /db_xref="GeneID:1252973" /translation="MLKTIRKHGITLALFAAGSTGLTAVINQMTKSTIHEQALQQQHA LFDQVLPPDRYNNNLQESCYLVDAPALGKGTHRVFIARKDDKPVAAIIEATAPDGYSG AIQLIVGADFNGTVLGTRVTEHHETPGLGDKIERRLSDWITHFSGKTISGENDTHWAV KKDGGDFDQFTGATITPRAVVNAVKRAGLYAESLPAQLPHLTACGE" misc_feature complement(1529881..1530486) /gene="ydgP" /locus_tag="STM1455" /note="electron transport complex protein RnfG; Validated; Region: PRK01908" /db_xref="CDD:179350" regulatory complement(1529883..1529888) /regulatory_class="ribosome_binding_site" /gene="ydgP" /locus_tag="STM1455" /note="putative RBS for ydgQ; RegulonDB:STMS1H001678" gene complement(1530502..1531569) /gene="ydgO" /locus_tag="STM1456" /db_xref="GeneID:1252974" CDS complement(1530502..1531560) /gene="ydgO" /locus_tag="STM1456" /note="similar to E. coli orf, hypothetical protein (AAC74702.1); Blastp hit to AAC74702.1 (352 aa), 87% identity in aa 1 - 352" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_460419.1" /db_xref="GeneID:1252974" /translation="MVFRIASSPYTHNQRQTSRIMLLVLIAALPGIAAQTWFFGWGTL FQIVLAAITALVAEAIVLRLRKQSVASHLQDYSALLTGLLLAVSIPPLAPWWMVVLGT GFAIIIAKQLYGGLGQNPFNPAMIGYVVLLISFPVQMTSWLPPYEIAATTPDMLDTLR MIFTGHTASGGDMTLLRIGIDGISQATPLDTFKTSLRAGHSVEQIMQYPIYSGALAGV GWQWVNLAWLVGGVFLLWQKAIRWHIPVSFLLTLALCAALGWLFSPATLASPQLHLLS GATMLGAFFILTDPVTASTTNRGRLIFGALAGVLVWLIRSFGGYPDGVAFAVLLANIT VPLIDYYTRPRVYGHRKG" misc_feature complement(1530508..1531557) /gene="ydgO" /locus_tag="STM1456" /note="electron transport complex protein RnfD; Reviewed; Region: rnfD; PRK00816" /db_xref="CDD:234844" regulatory complement(1530504..1530509) /regulatory_class="ribosome_binding_site" /gene="ydgP" /locus_tag="STM1455" /note="putative RBS for ydgP; RegulonDB:STMS1H001679" gene complement(1531561..1533778) /locus_tag="STM1457" /db_xref="GeneID:1252975" CDS complement(1531561..1533768) /locus_tag="STM1457" /note="similar to E. coli putative membrane protein (AAC74701.1); Blastp hit to AAC74701.1 (740 aa), 87% identity in aa 1 - 740" /codon_start=1 /transl_table=11 /product="putative respiratory-chain NADH dehydrogenase" /protein_id="NP_460420.1" /db_xref="GeneID:1252975" /translation="MLKLFSAFRKDKIWDFDGGIHPPEMKTQSNGTPLRQVPLAPRFV IPLKQHIGAEGELCVSVGDRVLRGQALTRGRGRMLPVHAPTSGTVIAIAPHSTAHPSA LAELSVIIDADGEDRWIEREGWSDYRAHSREALIERIHQYGVAGLGGAGFPTGVKLQG GGDKITTLIINAAECEPYITADDRLMQDCAAQIVEGIRILAHILQPREVLIGIEDNKP QAISMLRAVLADAHDISLRVIPTKYPSGGAKQLTRILTGKQVPHGGRSSDIGVLMQNV GTAYAVKRAVIDGEPITERVVTLTGEAVSRPGNVWARLGTPVRHLLNDAGFCPSADQM VIMGGPLMGFTLPWLDVPVVKITNCLLAPSVTEMGAPQEEKSCIRCSACADACPADLL PQQLYWFSKGQQHDKATAHHIADCIECGACAWVCPSNIPLVQYFRQEKAEINAIRLEE KRAAEAKARFEARQARLEREKAARLARHKSAAVQPAAKDQDAIAAALARVKEKQAQAT QPVVIQAGSQPDNSAVIAAREARKAQARAKQAAHPMADSAIPGDDPSKAAVEAAIARA KARKQEQQAGSEPAEPVDPRKAAVEAAIARAKARKQEQQAGSEPVEAVDPRKAAVEAA IARAKARKQEQQTGSEPAEAVDPRKAAVEAAIARAKARKQEQQTGSEPAEPIDPRKAA VEAAIARAKARKQEQQAGSEPAEPADPRKAAVAAAIARVQAKKAAQQQVVNED" misc_feature complement(1531582..1533750) /locus_tag="STM1457" /note="electron transport complex protein RnfC; Provisional; Region: PRK05035" /db_xref="CDD:235334" regulatory complement(1531564..1531569) /regulatory_class="ribosome_binding_site" /gene="ydgO" /locus_tag="STM1456" /note="putative RBS for ydgO; RegulonDB:STMS1H001680" gene complement(1533761..1534358) /gene="ydgM" /locus_tag="STM1458" /db_xref="GeneID:1252976" CDS complement(1533761..1534339) /gene="ydgM" /locus_tag="STM1458" /note="similar to E. coli orf, hypothetical protein (AAC74700.1); Blastp hit to AAC74700.1 (192 aa), 89% identity in aa 1 - 192" /codon_start=1 /transl_table=11 /product="putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase" /protein_id="NP_460421.1" /db_xref="GeneID:1252976" /translation="MNTIWIAVGALTLLGLVFGAILGYASRRFAVEDDPVVEKIDAIL PQSQCGQCGYPGCRPYAEAVGLQGEKINRCAPGGEAVMLKIAELLNVEPQPCDGEEQQ AAPVRMLAVIDENNCIGCTKCIQACPVDAIVGATRAMHTVMSDLCTGCNLCVDPCPTH CIELRPVNETPDSWKWDLNTIPVRIIPVEQHA" misc_feature complement(1533764..1534339) /gene="ydgM" /locus_tag="STM1458" /note="electron transport complex protein RnfB; Provisional; Region: PRK05113" /db_xref="CDD:235347" regulatory complement(1533773..1533778) /regulatory_class="ribosome_binding_site" /gene="ydgM" /locus_tag="STM1458" /note="putative RBS for STM1457; RegulonDB:STMS1H001681" gene complement(1534339..1534931) /locus_tag="STM1459" /db_xref="GeneID:1252977" CDS complement(1534339..1534920) /locus_tag="STM1459" /note="similar to E. coli orf, hypothetical protein (AAC74699.1); Blastp hit to AAC74699.1 (193 aa), 98% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="putative inner membrane oxidoreductase protein" /protein_id="NP_460422.1" /db_xref="GeneID:1252977" /translation="MTDYLLLFVGTVLVNNFVLVKFLGLCPFMGVSKKLETAMGMGLA TTFVMTLASICAWLIDTWILIPLDLIYLRTLAFILVIAVVVQFTEMVVRKTSPALYRL LGIFLPLITTNCAVLGVALLNINLGHHFLQSALYGFSAAVGFSLVMVLFAAIRERLAV ADVPAPFRGNAIALITAGLMSLAFMGFSGLVKL" misc_feature complement(1534342..1534920) /locus_tag="STM1459" /note="electron transport complex protein RsxA; Provisional; Region: PRK05151" /db_xref="CDD:235352" regulatory complement(1534353..1534358) /regulatory_class="ribosome_binding_site" /locus_tag="STM1459" /note="putative RBS for ydgM; RegulonDB:STMS1H001682" regulatory complement(1534926..1534931) /regulatory_class="ribosome_binding_site" /locus_tag="STM1459" /note="putative RBS for STM1459; RegulonDB:STMS1H001683" gene complement(1534997..1535448) /gene="ydgK" /locus_tag="STM1460" /db_xref="GeneID:1252978" CDS complement(1534997..1535437) /gene="ydgK" /locus_tag="STM1460" /note="similar to E. coli orf, hypothetical protein (AAC74698.1); Blastp hit to AAC74698.1 (154 aa), 82% identity in aa 9 - 154" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460423.1" /db_xref="GeneID:1252978" /translation="MTTTPPQRIGGWLLGPLAWLLVALLSASLALLLYVMALATPQTF KTLSGQETGNLLLWGISFITAIAMWYYTLWLTIAFFKRRRCVPKHYIIWLLVSVLLAV KAFAFSPVSDAFAVRQLLFPLLATALIVPYLKRSARVKTTFVNP" misc_feature complement(1535006..1535422) /gene="ydgK" /locus_tag="STM1460" /note="Protein of unknown function (DUF2569); Region: DUF2569; pfam10754" /db_xref="CDD:431473" regulatory complement(1535443..1535448) /regulatory_class="ribosome_binding_site" /gene="ydgK" /locus_tag="STM1460" /note="putative RBS for ydgK; RegulonDB:STMS1H001684" gene complement(1535526..1535756) /gene="ydgT" /locus_tag="STM1461" /db_xref="GeneID:1252979" CDS complement(1535526..1535741) /gene="ydgT" /locus_tag="STM1461" /note="similar to E. coli orf, hypothetical protein (AAC74697.1); Blastp hit to AAC74697.1 (71 aa), 88% identity in aa 1 - 71" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460424.3" /db_xref="GeneID:1252979" /translation="MTVQDYLLKFRKISSLESLEKLFDHLNYTLTDDMDIVNMYRAAD HRRAELVSGGRLFDVGQVPQSVWRYVQ" misc_feature complement(1535529..1535741) /gene="ydgT" /locus_tag="STM1461" /note="transcription modulator YdgT; Region: PRK10391" /db_xref="CDD:182426" regulatory complement(1535751..1535756) /regulatory_class="ribosome_binding_site" /gene="ydgT" /locus_tag="STM1461" /note="putative RBS for ydgT; RegulonDB:STMS1H001685" gene 1536297..1537412 /gene="ydgJ" /locus_tag="STM1462" /db_xref="GeneID:1252980" CDS 1536297..1537412 /gene="ydgJ" /locus_tag="STM1462" /note="similar to E. coli orf, hypothetical protein (AAC74696.1); Blastp hit to AAC74696.1 (359 aa), 91% identity in aa 11 - 359" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_460425.3" /db_xref="GeneID:1252980" /translation="MMVRTLLRLIARWCGIAISKTGGSEMNDKIRVGLIGYGYASKTF HAPLIMGTPGLELAAVSSSDETKVKADWPAVSVVSEPRHLFNDPHIDLIVIPTPNDTH FPLAKAALEAGKHVVVDKPFTVTLSQARELDALARSTGRVLSVFHNRRWDSDFLTLKA LLADGVLGEVSLFESHFDRFRPQVRDRWREQGGPGSGIWYDLAPHLLDQAIQLFGLPV SMTVDLAQLRPGAQSTDYFHAILSYPQRRVILHGTMLAAAESARYIVHGSRGSYVKYG LDPQEERLKNGERLPQEDWGYDMRDGVLTLVEGETRKEENWLTLPGNYPAYYAAIRDA LNGNGENPVPASQAIQIMELIELGMESAKHRATLCLA" misc_feature 1536372..1537409 /gene="ydgJ" /locus_tag="STM1462" /note="putative oxidoreductase; Provisional; Region: PRK11579" /db_xref="CDD:183212" gene complement(1537487..1538488) /gene="add" /locus_tag="STM1463" /db_xref="GeneID:1252981" CDS complement(1537487..1538488) /gene="add" /locus_tag="STM1463" /EC_number="3.5.4.4" /note="similar to E. coli adenosine deaminase (AAC74695.1); Blastp hit to AAC74695.1 (333 aa), 90% identity in aa 1 - 331" /codon_start=1 /transl_table=11 /product="adenosine deaminase" /protein_id="NP_460426.1" /db_xref="GeneID:1252981" /translation="MIDITLPLTDIHRHLDGNIRAQTILDLGRQFNIALPAQTLETLI PHVQVTSTEPDLVSFLTKLDWGVKVLASLDACRRVAFENIEDAARNGLHYVELRFSPG YMAMAHQLPIAGVVEAVIDGVRDGCNTFGVEARLIGIMSRTFGEAACLQELDALLAHR ENITALDLAGDELGFPGSLFLSHFNRARDAGWHITVHAGEAAGPESIWQAIRELGAER IGHGVKAVEDRALMDFLAQQRIGIESCLTSNIQTSTVASLADHPLKTFLEHGVLASLN TDDPAVQGVDIIHEYHVAAPAAGLSREQIRQAQINGLEIAFLSDSEKRALREKVAEA" misc_feature complement(1537490..1538488) /gene="add" /locus_tag="STM1463" /note="adenosine deaminase; Provisional; Region: PRK09358" /db_xref="CDD:236480" misc_feature complement(order(1537652..1537657,1537826..1537828, 1537889..1537891,1537898..1537900,1538447..1538449, 1538453..1538455)) /gene="add" /locus_tag="STM1463" /note="active site" /db_xref="CDD:238645" misc_feature complement(order(1537652..1537657,1537889..1537891, 1537979..1537981,1538441..1538443,1538447..1538449)) /gene="add" /locus_tag="STM1463" /note="purine riboside binding site [chemical binding]; other site" /db_xref="CDD:238645" gene complement(1538711..1538844) /gene="malY" /locus_tag="STM1464" /note="pseudogene; in-frame stop following codon 16" /pseudo /db_xref="GeneID:1252982" gene complement(1538854..1539073) /gene="malX" /locus_tag="STM1465" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1252983" gene complement(1539192..1540713) /gene="ydgA" /locus_tag="STM1466" /db_xref="GeneID:1252984" CDS complement(1539192..1540700) /gene="ydgA" /locus_tag="STM1466" /note="similar to E. coli orf, hypothetical protein (AAC74686.1); Blastp hit to AAC74686.1 (502 aa), 79% identity in aa 1 - 502" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460427.1" /db_xref="GeneID:1252984" /translation="MKKTLVAAGVVIALGIVWTGGAWYTGKKLENHLAEMVTQANEQL KRTAPEAGVELSYQNYQRGVFSSHLQLVVKPVAGADNTWLKPGQSIVLDESVSHGPFP LAQLKTLNLIPSMASVKTTLVNNDAAKPLFDIAKGDAPFVINTRIGYGGDTRSDISLK PLNYENAGEKVAFSGGEFQLNADKDGNVVSLSGEAQSGLVDAVNEYNQKVQLTFNNLK TDGTSKLASFGERVGDQKLTLDKLSIAIEGKEMAVLEGMEITGKSDLVNDGKTINSQL DYSLNSLKVQNQDLGSGKLTLKVGQIDGEAWHQFSQQYHAQTQALLNQPDVAQNPELY QQKVTEAFFSALPVLLKGDPVLTLAPLSWKNAKGETTLNLSLFLKDPATTTAQPQTLA QEVDRSVKSLDAKLAIPMDMAVEFMTQIAKLEGYQQDDAEKLAKQQVQGLSAMGQMFR LTTLKDNTIASSLQYANGQITLNGQKMPLEDFVGLFGMPALSVPDVPALPQQ" misc_feature complement(1539258..1540700) /gene="ydgA" /locus_tag="STM1466" /note="Uncharacterized conserved protein YdgA, DUF945 family [Function unknown]; Region: YdgA; COG5339" /db_xref="CDD:444123" regulatory complement(1540708..1540713) /regulatory_class="ribosome_binding_site" /gene="ydgA" /locus_tag="STM1466" /note="putative RBS for ydgA; RegulonDB:STMS1H001688" gene complement(1540803..1541990) /gene="manA" /locus_tag="STM1467" /db_xref="GeneID:1252985" CDS complement(1540803..1541978) /gene="manA" /locus_tag="STM1467" /EC_number="5.3.1.8" /note="mannose-6-phosphate isomerase. (SW:MANA_SALTY)" /codon_start=1 /transl_table=11 /product="mannose-6-phosphate isomerase" /protein_id="NP_460428.1" /db_xref="GeneID:1252985" /translation="MQKLINSVQNYAWGSKTALTELYGIANPQQQPMAELWMGAHPKS SSRITTANGETVSLRDAIEKNKTAMLGEAVANRFGELPFLFKVLCAAQPLSIQVHPNK RNSEIGFAKENAAGIPMDAAERNYKDPNHKPELVFALTPFLAMNAFREFSDIVSLLQP VAGAHSAIAHFLQVPNAERLSQLFASLLNMQGEEKSRALAVLKAALNSQQGEPWQTIR VISEYYPDDSGLFSPLLLNVVKLNPGEAMFLFAETPHAYLQGVALEVMANSDNVLRAG LTPKYIDIPELVANVKFEPKPAGELLTAPVKSGAELDFPIPVDDFAFSLHDLALQETS IGQHSAAILFCVEGEAVLRKDEQRLVLKPGESAFIGADESPVNASGTGRLARVYNKL" misc_feature complement(1540812..1541978) /gene="manA" /locus_tag="STM1467" /note="mannose-6-phosphate isomerase; Provisional; Region: PRK15131" /db_xref="CDD:185085" misc_feature complement(order(1541157..1541159,1541169..1541171, 1541181..1541183,1541187..1541189,1541208..1541210, 1541214..1541216,1541571..1541573,1541577..1541579, 1541583..1541585,1541682..1541684,1541688..1541690, 1541694..1541699,1541721..1541723,1541868..1541870, 1541874..1541876,1541940..1541942)) /gene="manA" /locus_tag="STM1467" /note="active site" /db_xref="CDD:380414" regulatory complement(1541985..1541990) /regulatory_class="ribosome_binding_site" /gene="manA" /locus_tag="STM1467" /note="putative RBS for manA; RegulonDB:STMS1H001689" regulatory 1542075..1542083 /regulatory_class="minus_35_signal" /note="putative -35_signal for fumA; RegulonDB:STMLTH004489" regulatory 1542099..1542107 /regulatory_class="minus_10_signal" /note="putative -10_signal for fumA; RegulonDB:STMLTH004489" regulatory 1542160..1542165 /regulatory_class="ribosome_binding_site" /note="putative RBS for fumA; RegulonDB:STMS1H001690" gene 1542178..1543824 /gene="fumA" /locus_tag="STM1468" /db_xref="GeneID:1252986" CDS 1542178..1543824 /gene="fumA" /locus_tag="STM1468" /EC_number="4.2.1.2" /note="fumarate hydratase class I; aerobic isozyme; (SW:FUMA_SALTY)" /codon_start=1 /transl_table=11 /product="fumarase A" /protein_id="NP_460429.2" /db_xref="GeneID:1252986" /translation="MSNKPFFYQDPFPLKKDDTEYYLLTSEHVSVAEFEGQEILKVAP EALTLLARQAFHDASFMLRPAHQQQVADILRDPQASENDKYVALQFLRNSDIAAKGVL PTCQDTGTAIIVGKKGQRVWTGGGDEAALARGVYNTYIEDNLRYSQNAALDMYKEVNT GTNLPAQIDLYSVDGDEYKFLCIAKGGGSANKTYLYQETKALLTPGKLKNYLVDKMRT LGTAACPPYHIAFVIGGTSAEANLKTVKLASAKYYDALPTEGNEHGQAFRDIELEKEL LLEAQNLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINRDGIW IEKLERNPGKYIPEALRQAGEGEAVRVDLNRPMSEILQQLSQYPVSTRLSLNGTIIVG RDIAHAKLKERMDRGEGLPQYIKDHPIYYAGPAKTPEGYASGSLGPTTAGRMDSYVDQ LQSQGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQGSIKRLECVEYPEL GMEAIWKIEVEDFPAFILVDDKGNDFFQQIQSSQCARCVK" misc_feature 1542181..1543788 /gene="fumA" /locus_tag="STM1468" /note="fumarate hydratase; Provisional; Region: PRK15389" /db_xref="CDD:237955" gene 1543884..1545395 /gene="fumC" /locus_tag="STM1469" /db_xref="GeneID:1252987" regulatory 1543884..1543892 /regulatory_class="minus_35_signal" /gene="fumC" /locus_tag="STM1469" /note="putative -35_signal for fumC; RegulonDB:STMLTH004490" regulatory 1543911..1543919 /regulatory_class="minus_10_signal" /gene="fumC" /locus_tag="STM1469" /note="putative -10_signal for fumC; RegulonDB:STMLTH004490" regulatory 1543980..1543985 /regulatory_class="ribosome_binding_site" /gene="fumC" /locus_tag="STM1469" /note="putative RBS for fumC; RegulonDB:STMS1H001691" CDS 1543992..1545395 /gene="fumC" /locus_tag="STM1469" /EC_number="4.2.1.2" /note="fumarate hydratase Class II; similar to E. coli fumarase C= fumarate hydratase Class II; isozyme (AAC74683.1); Blastp hit to AAC74683.1 (467 aa), 91% identity in aa 1 - 467" /codon_start=1 /transl_table=11 /product="fumarase C" /protein_id="NP_460430.1" /db_xref="GeneID:1252987" /translation="MVTVRREKDSMGAIEVPADKLWGAQTQRSLEHFRISTEKMPVSL IHALALTKRAAAKVNQDLGLLAAEKASAIIQAADEVLAGKHADEFPLAIWQTGSGTQS NMNMNEVLANRASEILGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALREHL IPQLSALTDTLRDKSHAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLRHIEHS LPHVAELALGGTAVGTGLNTHPEYARRVAEELATITAAPFVTAPNKFEALATCDALVQ AHGALKGLAASLMKIANDVRWLASGPRCGIGEIAIPENEPGSSIMPGKVNPTQCEAVT MLCCQVMGNDVAINMGGASGNFELNVYRPMVIHNFLQTVRLLADGMESFNKHCASGIE PNRERITQLLNESLMLVTALNTHIGYDKAAEIAKKAHKEGLTLKASAVALGYLSDEEF DAWVRPELMVGSMTPGR" misc_feature 1543992..1545380 /gene="fumC" /locus_tag="STM1469" /note="fumarate hydratase; Reviewed; Region: fumC; PRK00485" /db_xref="CDD:234779" misc_feature order(1544283..1544285,1544289..1544291,1544367..1544369, 1544376..1544387,1544406..1544414,1544553..1544555, 1544961..1544963,1544967..1544969,1544982..1544984) /gene="fumC" /locus_tag="STM1469" /note="active site" /db_xref="CDD:176465" misc_feature order(1544547..1544558,1544568..1544570,1544586..1544591, 1544607..1544609,1544619..1544621,1544631..1544633, 1544685..1544687,1544775..1544780,1544787..1544789, 1544796..1544801,1544805..1544807,1544814..1544819, 1544826..1544828,1544835..1544840,1544847..1544852, 1544856..1544861,1544868..1544873,1545021..1545023, 1545045..1545047,1545054..1545062,1545219..1545221) /gene="fumC" /locus_tag="STM1469" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:176465" gene complement(1545392..1546321) /gene="tus" /locus_tag="STM1470" /db_xref="GeneID:1252988" CDS complement(1545392..1546321) /gene="tus" /locus_tag="STM1470" /note="DNA replication terminus site-binding protein (TER protein). (SW:TUS_SALTY)" /codon_start=1 /transl_table=11 /product="replication termination protein" /protein_id="NP_460431.1" /db_xref="GeneID:1252988" /translation="MSRYDLVERLNGTFRQIEQHLAALTDNLQQHSLLIARVFSLPQV TKEAEHAPLDTIEVTQHLGKEAEALALRHYRHLFIQQQSENRSSKAAVRLPGVLCYQV DNATQLDLENQIQRINQLKTTFEQMVTVESGLPSAARFEWVHRHLPGLITLNAYRTLT LINNPATIRFGWANKHIIKNLSRDEVLSQLKKSLASPRSVPPWTREQWQFKLEREYQD IAALPQQARLKIKRPVKVQPISRIWYKGQQKQVQHACPTPIIALINTDNGAGVPDIGG LENYDADNIQHRFKPQAQPLRLIIPRLHLYVAD" misc_feature complement(1545395..1546321) /gene="tus" /locus_tag="STM1470" /note="DNA replication terminus site-binding protein; Provisional; Region: PRK02951" /db_xref="CDD:235090" gene complement(1546397..1547711) /gene="rstB" /locus_tag="STM1471" /db_xref="GeneID:1252989" CDS complement(1546397..1547698) /gene="rstB" /locus_tag="STM1471" /EC_number="2.7.3.-" /note="similar to E. coli sensor histidine protein kinase (RstA regulator) (AAC74681.1); Blastp hit to AAC74681.1 (433 aa), 82% identity in aa 1 - 433" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with RstA" /protein_id="NP_460432.1" /db_xref="GeneID:1252989" /translation="MKKLFVQFYLLLFVCFLVMTLLVGLVYKFTAERAGRQSLDDLMK SSLYLMRSELREIPPREWGKTLKEMDLNLSFDLRVEPLNHYKLDAATTQRLREGDIVA LDDQYTFIQRIPRSHYVLAVGPVPYLYFLHQMRLLDIALMALIAFSLAFPVFIWMRPH WQEMLRLESAAQRFGEGHLTERLHFDNGSSFERLGVAFNQMADNINALIASKKQLIDG IAHELRTPLVRLRYRLEMSENLTPPESQALNRDIGQLEALIEELLTYARLDRPQNELM LTEPDLPAWLLAHLQDVQSVTPERAVNLVTCVIGDYGALDMRLMSRVLDNLLNNALRY SHTTVQVSLLLDGSQATLIVEDDGPGIEADARERVFEPFVRLDPSRDRATGGCGLGLA IVHSIALAMGGSVVCDESELGGAKFSFRWPVWHAMPDMTAA" misc_feature complement(1546400..1547698) /gene="rstB" /locus_tag="STM1471" /note="sensor protein RstB; Provisional; Region: PRK10604" /db_xref="CDD:236724" regulatory complement(1547706..1547711) /regulatory_class="ribosome_binding_site" /gene="rstB" /locus_tag="STM1471" /note="putative RBS for rstB; RegulonDB:STMS1H001692" gene complement(1547809..1549522) /locus_tag="STM1472" /db_xref="GeneID:1252990" CDS complement(1547809..1549515) /locus_tag="STM1472" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460433.1" /db_xref="GeneID:1252990" /translation="MLMISLVPSLLSRTALLFLLTATGAATAARPAADIILHNGNIIT LNDAQPQASALAISGSRIVAIGDDTATNEWRGDHTRTIDLQGKTVIPGLTDTHIHAIR GGQTWTFETYWYDSPSLKDALDKLRADANRRPHDQWVAVVGSWIPAQFAENRAPTVAE LSHALPDHPAYIQYLYDYALVNQRGIDVLGLNNTPPPDLAGIRVERDAKGSATGKLFG DIAAFNQLFASISRNADREGGLRQFFADMNARGVTGIIDPSAGPAAAYEPLFAMRNQG DLPLRVGYRIPVQPEAKGHEAQWFSNLMAFRPARADDGQLAFLGLGESLVAGMNDGVR MAPGFSSSEQDKTALRQVATFAAKRGIPLEIHAYTDDSADAILTIFEQVAQQYDLRPL RWSIAHLNTGSPQTLERMRKLGLAYTVQMGPYFEGLAIRDANPPGATDNSPPVRLALD KGLVVAGGTDSTRIGIAGVWHAIEYHITGIASGGSVRKPASERLTRLEALALYTRHAA WLAFAEQHRGQLRVGKQADLAVLNQPFMTMPEDRIDTIRAVLTLVDGRIVHESPDLNA GQ" misc_feature complement(1547926..1549356) /locus_tag="STM1472" /note="YtcJ_like metal dependent amidohydrolases. YtcJ is a Bacillus subtilis ORF of unknown function. The Arabidopsis homolog LAF3 has been identified as a factor required for phytochrome A signalling; Region: YtcJ_like; cd01300" /db_xref="CDD:238625" misc_feature complement(order(1548136..1548138,1548322..1548324, 1548418..1548420,1549219..1549221,1549225..1549227)) /locus_tag="STM1472" /note="active site" /db_xref="CDD:238625" regulatory complement(1549517..1549522) /regulatory_class="ribosome_binding_site" /locus_tag="STM1472" /note="putative RBS for STM1472; RegulonDB:STMS1H001693" gene complement(1549668..1550813) /gene="ompN" /locus_tag="STM1473" /db_xref="GeneID:1252991" CDS complement(1549668..1550801) /gene="ompN" /locus_tag="STM1473" /note="non-specific porin; similar to E. coli putative outer membrane protein (AAC74459.1); Blastp hit to AAC74459.1 (377 aa), 81% identity in aa 1 - 377" /codon_start=1 /transl_table=11 /product="outer membrane protein N" /protein_id="NP_460434.1" /db_xref="GeneID:1252991" /translation="MKRKVLALVIPALLAAGAAHAAEIYNKDGNKLDLYGKVDGLHYF SDDSSKDGDQTYMRVGFKGETQINDQLTGYGQWEYNVQANTTEGEGANSWTRLAFAGL KFGDYGSFDYGRNYGVLYDVEGWTDMLPEFGGDSYTYADNFMTGRANGVATYRNTDFF GLVDGLNFALQYQGANENQVSHEQEGTNNGGDRNVKNANGDGFGISSTYDLGMGVSFG AAYTTSDRTNGQVNYSTAGGDKADAWTVGAKYDANNIYLATMYSETRNMTPYGNDDCR SCVANKTQNFEVTAQYQFDFGLRPAVSFLMSKGKDLTYNNVNGDDKDLVKYADVGATY YFNKNFSTYVDYKINLLDDDDQFYKDAGISTDDIVALGMVYQF" misc_feature complement(1549671..1550735) /gene="ompN" /locus_tag="STM1473" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" misc_feature complement(order(1549671..1549673,1549677..1549679, 1549683..1549685,1549782..1549784,1549791..1549796, 1550352..1550357,1550361..1550363,1550460..1550468, 1550496..1550510,1550514..1550519,1550550..1550561, 1550565..1550567,1550571..1550579,1550583..1550585, 1550601..1550615,1550676..1550684,1550688..1550690, 1550706..1550708,1550712..1550714)) /gene="ompN" /locus_tag="STM1473" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238208" misc_feature complement(order(1550361..1550363,1550421..1550423, 1550514..1550516,1550628..1550630,1550691..1550693)) /gene="ompN" /locus_tag="STM1473" /note="eyelet of channel [active]" /db_xref="CDD:238208" regulatory complement(1550808..1550813) /regulatory_class="ribosome_binding_site" /gene="ompN" /locus_tag="STM1473" /note="putative RBS for ompN; RegulonDB:STMS1H001694" gene 1550858..1551216 /locus_tag="STM1474" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1252992" gene complement(1551281..1552012) /gene="rstA" /locus_tag="STM1475" /db_xref="GeneID:1252993" CDS complement(1551281..1552012) /gene="rstA" /locus_tag="STM1475" /note="similar to E. coli response transcriptional regulatory protein (RstB sensor) (AAC74680.1); Blastp hit to AAC74680.1 (242 aa), 84% identity in aa 4 - 242" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with RstB (OmpR family)" /protein_id="NP_460435.1" /db_xref="GeneID:1252993" /translation="MNRIVFVEDDAEVGSLIAAYLAKHDIDVIVEPRGDRAEDLILTT QPDLVLLDIMLPGKDGMTICRDLRHRWQGPIVLLTSLDSDMNHILALEMGACDYILKT TPPAVLLARLRLHLRQSEQTQQAKSLQESALTPHKALRFGALTIDPLNRAVQLNGDFI SLSTADFELLWELATHAGQIMDRDALLKTLRGVNYDGLDRSVDVAISRLRKKLLDSAA EPYRIKTIRNKGYLFAPHAWDETTG" misc_feature complement(1551293..1552012) /gene="rstA" /locus_tag="STM1475" /note="DNA-binding transcriptional regulator RstA; Provisional; Region: PRK10701" /db_xref="CDD:236738" gene 1552133..1552474 /gene="ydgC" /locus_tag="STM1476" /db_xref="GeneID:1252994" regulatory 1552133..1552138 /regulatory_class="ribosome_binding_site" /gene="ydgC" /locus_tag="STM1476" /note="putative RBS for ydgC; RegulonDB:STMS1H001696" CDS 1552139..1552474 /gene="ydgC" /locus_tag="STM1476" /note="similar to E. coli orf, hypothetical protein (AAC74679.1); Blastp hit to AAC74679.1 (111 aa), 81% identity in aa 1 - 111" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460436.1" /db_xref="GeneID:1252994" /translation="MGLVIKAALGALVVVLIGLLSKTKNYYIAGLIPLFPTFALIAHY IVASERGIDAMRTTIAFSMWSIIPYFIYLATLWYFSGVMRLPVALGGAVVCWGLSAWL LIFCWIKWH" misc_feature 1552151..1552471 /gene="ydgC" /locus_tag="STM1476" /note="GlpM protein; Region: GlpM; pfam06942" /db_xref="CDD:429201" gene complement(1552536..1553928) /gene="ydgI" /locus_tag="STM1477" /db_xref="GeneID:1252995" CDS complement(1552536..1553918) /gene="ydgI" /locus_tag="STM1477" /note="similar to E. coli putative arginine/ornithine antiporter (AAC74677.1); Blastp hit to AAC74677.1 (460 aa), 92% identity in aa 1 - 460" /codon_start=1 /transl_table=11 /product="putative amino acid transporter" /protein_id="NP_460437.1" /db_xref="GeneID:1252995" /translation="MEKKLGLSALTALVLSSMLGAGVFSLPQNMAAVASPAALLIGWA ITGVGILLLAFAMLILTRIRSELDGGIFTYAREGFGELIGFCSAWGYWLCAVIANVSY LVIVFSALSFFTDTPALRLFGDGNTWQAIVGASVLLWIVHFLILRGVQTAASINLVAT LAKLLPLGAFIVLAIMMFKLDTFTLDFTGVELGIPVWEQVKNTMLITLWVFIGVEGAV VVSARAKNKRDVGRATLLAVLAALGIYLLVTLLSLGVLARPELAEMRNPSMAGLMVKM MGPWGEIIIAAGLIVSVCGAYLSWTIMAAEVPFLAAAYKSFPGIFARQNAQGAPSASL WLTNICVQICLVLIWLTGSDYNTLLTIASEMILVPYFLVGAFLLKIATRPLHRAVGIG ACIYGLWLLYASGPMHLLLSVVLYAPGLLVFLYARRTHKHDNVLNRQEVVLIGLLLVA AVPATWMLVG" misc_feature complement(1552539..1553912) /gene="ydgI" /locus_tag="STM1477" /note="transporter, basic amino acid/polyamine antiporter (APA) family; Region: 2A0302; TIGR00905" /db_xref="CDD:129983" regulatory complement(1553923..1553928) /regulatory_class="ribosome_binding_site" /gene="ydgI" /locus_tag="STM1477" /note="putative RBS for ydgI; RegulonDB:STMS1H001697" gene complement(1554217..1555174) /gene="ydgH" /locus_tag="STM1478" /db_xref="GeneID:1252996" CDS complement(1554217..1555161) /gene="ydgH" /locus_tag="STM1478" /note="similar to E. coli orf, hypothetical protein (AAC74676.1); Blastp hit to AAC74676.1 (314 aa), 90% identity in aa 1 - 314" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460438.1" /db_xref="GeneID:1252996" /translation="MKLKNTLLASALLSAAAFSVHAATELTPEQAAALKPYDRIVITG RFNAIGDAVSAVSRRADKEGAASFYVVDTSEFGNSGNWRVVADVYKADAPKADAPKNR VINGIVELPKDQAVQLEPYDTVTVQGFYRSQPEVNDAITKAAKQKGAYAFYIVRQIDA NQGGNQRITAFIYKQDAKKRIVQSPDAIPADSEAGRAALAQGGEAAKKVEIPGVATSA SPSAEVGRFFETQSSKGGRYTVTLPDGTKVEELNKATAAMMVPFDSVKFTGNYGNMTE ISYQVAKRAAKKGAKYYHITRQWQERGNNITISADLYK" misc_feature complement(1554220..1555161) /gene="ydgH" /locus_tag="STM1478" /note="DUF1471 family protein YdgH; Region: ydgH_STM1478; NF040471" /db_xref="CDD:439699" regulatory complement(1555169..1555174) /regulatory_class="ribosome_binding_site" /gene="ydgH" /locus_tag="STM1478" /note="putative RBS for ydgH; RegulonDB:STMS1H001698" gene 1555562..1557217 /gene="pntA" /locus_tag="STM1479" /db_xref="GeneID:1252997" regulatory 1555562..1555570 /regulatory_class="minus_35_signal" /gene="pntA" /locus_tag="STM1479" /note="putative -35_signal for pntA; RegulonDB:STMLTH004491" regulatory 1555586..1555594 /regulatory_class="minus_10_signal" /gene="pntA" /locus_tag="STM1479" /note="putative -10_signal for pntA; RegulonDB:STMLTH004491" regulatory 1555672..1555677 /regulatory_class="ribosome_binding_site" /gene="pntA" /locus_tag="STM1479" /note="putative RBS for pntA; RegulonDB:STMS1H001699" CDS 1555688..1557217 /gene="pntA" /locus_tag="STM1479" /EC_number="1.6.1.2" /note="proton pump; similar to E. coli pyridine nucleotide transhydrogenase, alpha subunit (AAC74675.1); Blastp hit to AAC74675.1 (510 aa), 92% identity in aa 1 - 510" /codon_start=1 /transl_table=11 /product="pyridine nucleotide transhydrogenase, alpha subunit" /protein_id="NP_460439.1" /db_xref="GeneID:1252997" /translation="MRIGIPKERLPNETRVAATPKTVEQLLKLGFSVAIESGAGQLAS FDDKAFAQAGADIVDGNAIWQSEIILKVNAPEEEEIALLNPGTTLVSFIWPAQNPGLM EKLAERKVTVMAMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAA GKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKE EAGSGDGYAKVMSEAFIKAEMALFAAQAKEVDIIVTTALIPGKPAPKLITRDMVDSMK AGSVIVDLAAQNGGNCEYTVANQVVTTDNGVKVIGYTDLPGRLPTQSSQLYGTNLVNL LKLLCKEKDGNIDVDFDDVVIRGVTVIRDGDITWPAPPIQVSAQPQAAPKAAPAPKEP EKPTSPWRKYALMALAIILFGWLADVAPKEFLGHFTVFALACVVGYYVVWNVSHALHT PLMSVTNAISGIIVVGALLQIGQGGWVSFLSFIAVLIASINIFGGFTVTQRMLKMFRK N" misc_feature 1555688..1557211 /gene="pntA" /locus_tag="STM1479" /note="Re/Si-specific NAD(P)(+) transhydrogenase subunit alpha; Region: pntA; PRK09424" /db_xref="CDD:236507" gene 1557216..1558616 /gene="pntB" /locus_tag="STM1480" /db_xref="GeneID:1252998" regulatory 1557216..1557221 /regulatory_class="ribosome_binding_site" /gene="pntB" /locus_tag="STM1480" /note="putative RBS for pntB; RegulonDB:STMS1H001700" CDS 1557228..1558616 /gene="pntB" /locus_tag="STM1480" /EC_number="1.6.1.2" /note="proton pump; similar to E. coli pyridine nucleotide transhydrogenase, beta subunit (AAC74674.1); Blastp hit to AAC74674.1 (462 aa), 95% identity in aa 1 - 462" /codon_start=1 /transl_table=11 /product="pyridine nucleotide transhydrogenase, beta subunit" /protein_id="NP_460440.1" /db_xref="GeneID:1252998" /translation="MSGGLVTAAYIVAAILFIFSLAGLSKHETSRQGNNFGIAGMAIA LLATIFGPDTGNVAWILVAMIIGGAIGIRMAKKVEMTEMPELVAILHSFVGLAAVLVG FNSYLYHDASLAPVLVNIHLTEVFLGIFIGAVTFTGSIVAFGKLRGKISSKPLMLPNR HKMNLAALVVSFLLLLVFVRTESVGLQVLALLLMTIIALAFGWHLVASIGGADMPVVV SMLNSYSGWAAAAAGFMLSNDLLIVTGALVGSSGAILSYIMCKAMNRSFISVIAGGFG TDGSSTGDDQEAGEHREITAEETAEMLKNSHSVIITPGYGMAVAQAQYPVAEITEKLR ARGINVRFGIHPVAGRLPGHMNVLLAEAKVPYDIVLEMDEINDDFADTDTVLVIGAND TVNPAAQDDPRSPIAGMPVLEVWKAQNVVVFKRSMNTGYAGVQNPLFFKENTQMLFGD AKASVDAILKAL" misc_feature 1557228..1558613 /gene="pntB" /locus_tag="STM1480" /note="Re/Si-specific NAD(P)(+) transhydrogenase subunit beta; Region: pntB; PRK09444" /db_xref="CDD:236520" gene complement(1558791..1559836) /locus_tag="STM1481" /db_xref="GeneID:1252999" CDS complement(1558791..1559825) /locus_tag="STM1481" /note="similar to E. coli putative transport protein (AAC74673.1); Blastp hit to AAC74673.1 (344 aa), 88% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="putative membrane transport protein" /protein_id="NP_460441.1" /db_xref="GeneID:1252999" /translation="MAKPIITLNGLKIVIMLGMLVVILSGIRFAADIIVPFILALFIA VVLNPVVQRMTRCRIPRVIAVSLLIVIIVMLMVLLLAYLGTSLNELARTLPQYRSSLV IPLQRIEPWLQRAGIGVSVDELAKYIDPNAAMTLVTNLLTQLSNAMSSIFLLLLTVVF MLLEVPQLPEKLQQMMSRPVEGMAAIQRALDSVSHYLVLKTAISIVTGLVAWGMLAAL DVRFAFVWGLLAFALNYIPNIGSVLAALPPIIQVLVFNGFYDALLVLAGYLLINLVFG NILEPRIMGRGLGLSTLVVFLSLIFWGWLLGPVGMLLSVPLTIIVKIALEQTTGGQSI AVLLSDLNKR" misc_feature complement(1558794..1559825) /locus_tag="STM1481" /note="pheromone autoinducer 2 transporter; Reviewed; Region: tqsA; PRK12287" /db_xref="CDD:183405" regulatory complement(1559831..1559836) /regulatory_class="ribosome_binding_site" /locus_tag="STM1481" /note="putative RBS for STM1481; RegulonDB:STMS1H001701" gene 1560230..1560605 /gene="ydgF" /locus_tag="STM1482" /db_xref="GeneID:1253000" regulatory 1560230..1560235 /regulatory_class="ribosome_binding_site" /gene="ydgF" /locus_tag="STM1482" /note="putative RBS for ydgF; RegulonDB:STMS1H001702" CDS 1560243..1560605 /gene="ydgF" /locus_tag="STM1482" /note="similar to E. coli possible chaperone (AAC74672.1); Blastp hit to AAC74672.1 (121 aa), 83% identity in aa 4 - 121" /codon_start=1 /transl_table=11 /product="putative membrane transporter of cations and cationic drugs" /protein_id="NP_460442.1" /db_xref="GeneID:1253000" /translation="MFYWILLALAIATEITGTLSMKWASVGNGNAGFILMLVMITLSY IFLSFAVKKIALGVAYALWEGIGILFITIFSVLLFDEALSTMKIAGLLTLVAGIVLIK SGTRKPGKPVKEATRATI" misc_feature 1560243..1560602 /gene="ydgF" /locus_tag="STM1482" /note="multidrug/spermidine efflux SMR transporter subunit MdtJ; Region: PRK10452" /db_xref="CDD:182471" gene 1560579..1560921 /gene="ydgE" /locus_tag="STM1483" /db_xref="GeneID:1253001" regulatory 1560579..1560584 /regulatory_class="ribosome_binding_site" /gene="ydgE" /locus_tag="STM1483" /note="putative RBS for ydgE; RegulonDB:STMS1H001703" CDS 1560592..1560921 /gene="ydgE" /locus_tag="STM1483" /note="similar to E. coli possible chaperone (AAC74671.1); Blastp hit to AAC74671.1 (109 aa), 84% identity in aa 3 - 109" /codon_start=1 /transl_table=11 /product="putative membrane transporter of cations and cationic drugs" /protein_id="NP_460443.1" /db_xref="GeneID:1253001" /translation="MQQFEWIHGAWLGLAIMLEIAANVLLKFSDGFRRKCYGILSLAA VLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWVLFGQRLNPKGWVGVILLLAG MVMIKFA" misc_feature 1560592..1560918 /gene="ydgE" /locus_tag="STM1483" /note="multidrug/spermidine efflux SMR transporter subunit MdtI; Region: PRK10650" /db_xref="CDD:182618" gene complement(1560961..1561782) /locus_tag="STM1484" /db_xref="GeneID:1253002" CDS complement(1560961..1561782) /locus_tag="STM1484" /note="similar to E. coli orf, hypothetical protein (AAC74670.1); Blastp hit to AAC74670.1 (273 aa), 77% identity in aa 1 - 272" /codon_start=1 /transl_table=11 /product="putative protease" /protein_id="NP_460444.1" /db_xref="GeneID:1253002" /translation="MHKTIAVLLGIVCFLPVMAKAGGAETDATDASDVKTLFFNHDDR VPVADPTQSPWDAIGQLETASGNLCTATLISPHIALTAGHCLLTPPKGKPDKAVALRF VARKGVWRYEIHGIEGRVEPSLGRRLKADGDGWIVPPAAASWDFGLVILRYPPSGITP VPLFTGDKAALTAALKAADRKVTQSGYPEDHLNALYSHQDCVVTGWAQNAVLSHQCDT LPGDSGSPLLLHTDSGWQLIGVQSSAPAAKDRWRADNRAISVTGFRDKLKALAQD" misc_feature complement(1560964..1561614) /locus_tag="STM1484" /note="V8-like Glu-specific endopeptidase [Posttranslational modification, protein turnover, chaperones]; Region: eMpr; COG3591" /db_xref="CDD:442810" gene complement(1562051..1562346) /locus_tag="STM1485" /db_xref="GeneID:1253003" CDS complement(1562051..1562335) /locus_tag="STM1485" /note="similar to E. coli acid shock protein (AAC74669.1); Blastp hit to AAC74669.1 (111 aa), 67% identity in aa 2 - 81, 46% identity in aa 30 - 111" /codon_start=1 /transl_table=11 /product="acid shock protein" /protein_id="NP_460445.3" /db_xref="GeneID:1253003" /translation="MGLNENQIEGIKMKKVLALVVAAAMGLSSAAFAAETATPAKTAA PAKTTQTTQHHKKQHKKTVEQKAQAAKKHQKKGGKAPAKTTSKPTTQPAA" misc_feature complement(1562054..1562299) /locus_tag="STM1485" /note="acid shock protein; Region: PRK03577" /db_xref="CDD:235132" regulatory complement(1562341..1562346) /regulatory_class="ribosome_binding_site" /locus_tag="STM1485" /note="putative RBS for STM1485; RegulonDB:STMS1H001704" gene complement(1562694..1563958) /gene="ynfM" /locus_tag="STM1486" /db_xref="GeneID:1253004" CDS complement(1562694..1563947) /gene="ynfM" /locus_tag="STM1486" /note="similar to E. coli putative transport protein (AAC74668.1); Blastp hit to AAC74668.1 (417 aa), 91% identity in aa 1 - 417" /codon_start=1 /transl_table=11 /product="putative MFS familty transport protein" /protein_id="NP_460446.1" /db_xref="GeneID:1253004" /translation="MSRTTILDDATASDIDEQRHSQPVQFIKRGTAPFMRVTLALFSA GLATFALLYCVQPILPVLSQEFGVSPASSSVSLSISTAMLAIGLLFTGPLSDAIGRKP VMVTALLLASCCTLLSTMMTSWHGILIMRALIGLSLSGVAAVGMTYLSEEIHPSFVAF SMGLYISGNSIGGMSGRLLSGVMTDFFNWRIALAAIGCFALASALMFWKILPASQHFR PTSLRPKTLFINFRLHWRDRGLPLLFAEGFLLMGAFVTLFNYIGYRLMLSPWELSQAV VGLLSVAYLTGTWSSPKAGAMTSRYGRGPVMLFSTAVMLGGLLLTLFTSLWLIFAGML LFSAGFFAAHSVASSWIGPRARRAKGQASSLYLFSYYLGSSIAGTLGGVFWHSYGWNG VGGFIALMLVLAILVGTRLHHRLHA" misc_feature complement(1562721..1563836) /gene="ynfM" /locus_tag="STM1486" /note="Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily; Region: MFS_NepI_like; cd17324" /db_xref="CDD:340882" misc_feature complement(order(1562826..1562828,1562835..1562840, 1562847..1562852,1562859..1562861,1562904..1562906, 1562916..1562918,1562928..1562933,1563075..1563077, 1563087..1563089,1563171..1563173,1563180..1563188, 1563195..1563200,1563207..1563209,1563429..1563431, 1563438..1563443,1563450..1563452,1563510..1563512, 1563519..1563527,1563531..1563536,1563684..1563686, 1563780..1563782,1563789..1563794,1563801..1563806)) /gene="ynfM" /locus_tag="STM1486" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340882" regulatory complement(1563953..1563958) /regulatory_class="ribosome_binding_site" /gene="ynfM" /locus_tag="STM1486" /note="putative RBS for ynfM; RegulonDB:STMS1H001705" gene 1564067..1564966 /gene="ynfL" /locus_tag="STM1487" /db_xref="GeneID:1253005" CDS 1564067..1564966 /gene="ynfL" /locus_tag="STM1487" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74667.1); Blastp hit to AAC74667.1 (297 aa), 83% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_460447.1" /db_xref="GeneID:1253005" /translation="MNIELRHLRYFVAVAEELHFGRAAARLNISQPPLSQQIQILEQQ VGARLLARTNRSVALTAAGRQFLVDSRHILSLVNDAAARAERLHQGEAGEIRIGFTSS APFIRAVSHTFSLFRQSYPGVHMQTREMNTREQIAPLNEGVLDIGLLRNTPLPDTLNR EVILHEPLMAMIPREHRLAQKPVVSLTELAEEPFVFFDPHVGTGLYDDILGLMRRYNL SPTITQEVGEAMTIIGLVAAGLGVSILPASFKRVQMSEMRWVPLAEEDAVSEMWLVWP KHHEQSHAVQRFCQLLLLAARRD" misc_feature 1564079..1564258 /gene="ynfL" /locus_tag="STM1487" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature 1564346..1564942 /gene="ynfL" /locus_tag="STM1487" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in the catabolism of aromatic compounds and that of other related regulators, contains type 2 periplasmic binding fold; Region: PBP2_LTTR_aromatics_like; cd08414" /db_xref="CDD:176106" misc_feature order(1564361..1564363,1564385..1564387,1564394..1564399, 1564403..1564408,1564415..1564417,1564439..1564441, 1564445..1564447,1564451..1564453,1564583..1564585, 1564685..1564690,1564745..1564750,1564766..1564771, 1564775..1564780,1564832..1564834) /gene="ynfL" /locus_tag="STM1487" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176106" misc_feature order(1564364..1564366,1564514..1564516,1564655..1564660, 1564679..1564681) /gene="ynfL" /locus_tag="STM1487" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176106" gene 1565081..1566314 /gene="mlc" /locus_tag="STM1488" /db_xref="GeneID:1253006" regulatory 1565081..1565086 /regulatory_class="ribosome_binding_site" /gene="mlc" /locus_tag="STM1488" /note="putative RBS for mlc; RegulonDB:STMS1H001706" CDS 1565094..1566314 /gene="mlc" /locus_tag="STM1488" /note="global repressor of carbohydrate metabolism (pts operon) (NagC/XylR family); similar to E. coli putative NAGC-like transcriptional regulator (AAC74666.1); Blastp hit to AAC74666.1 (406 aa), 90% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="transcriptional repressor of ptsG and ptsHI" /protein_id="NP_460448.1" /db_xref="GeneID:1253006" /translation="MVADSQPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAP ASITKIVREMLEAHLVQELEIKEAGSRGRPAVGLMVETEAWHYLSIRISRGEIFLALR DLSSKLVVEECLPLPLTEATPLLERIITHVDRFFTRHQQKLERLTSIAITLPGIIDTE NGVVHRMPYYEDVKEMPLGDSLERHTGVPVYIQHDISAWTMAEALFGASRGARDVIQV VIDHNVGAGVITDGHLLHAGSSSLVEIGHTQVDPYGKRCYCGNHGCLETIASVDSVLE LTQLRLNQSMSSMLHGQPLTVDSLCQAAMQGDLLAKDIISGVGAHVGRILAIMVNLFN PQKILIGSPLSKAADILFPAIADSIRQQALPAYSRNTVVESTQFTNQGTMAGAALVKD AMYNGSLLIRLLQG" misc_feature 1565151..1565273 /gene="mlc" /locus_tag="STM1488" /note="helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cl46859" /db_xref="CDD:481199" misc_feature 1565343..1566311 /gene="mlc" /locus_tag="STM1488" /note="ATPase-like domain of protein Mlc and similar proteins; Region: ASKHA_ATPase_ROK_Mlc; cd24074" /db_xref="CDD:466924" gene 1566428..1567135 /gene="ynfK" /locus_tag="STM1489" /db_xref="GeneID:1253007" regulatory 1566428..1566433 /regulatory_class="ribosome_binding_site" /gene="ynfK" /locus_tag="STM1489" /note="putative RBS for ynfK; RegulonDB:STMS1H001707" CDS 1566440..1567135 /gene="ynfK" /locus_tag="STM1489" /EC_number="6.3.3.3" /note="similar to E. coli orf, hypothetical protein (AAC74665.1); Blastp hit to AAC74665.1 (235 aa), 93% identity in aa 5 - 233" /codon_start=1 /transl_table=11 /product="putative dethiobiotin synthase" /protein_id="NP_460449.1" /db_xref="GeneID:1253007" /translation="MLKRFFITGTDTSVGKTVVSRALLQALASSGKSVAGYKPVAKGS KETAEGMRNKDALVLQSVSSLELPYEAINPIALSEEESSVAHSCPINYTLLSNGLASL SDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCINHALLTAQAVA NDGLPLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRAEQRELGQYIRLS MLGSVLAVDRIMA" misc_feature 1566446..1567093 /gene="ynfK" /locus_tag="STM1489" /note="Dethiobiotin synthetase [Coenzyme transport and metabolism]; Region: BioD; COG0132" /db_xref="CDD:439902" gene complement(1567091..1568380) /locus_tag="STM1490" /db_xref="GeneID:1253008" CDS complement(1567091..1568380) /locus_tag="STM1490" /note="similar to E. coli putative chloride channel (AAC74664.1); Blastp hit to AAC74664.1 (438 aa), 78% identity in aa 9 - 437" /codon_start=1 /transl_table=11 /product="putative chloride channel protein" /protein_id="NP_460450.3" /db_xref="GeneID:1253008" /translation="MHRLHAYPDLRAMFRRLLIATLIGILAALAVAAFRHAMQLLEWI FLSNDTGSLVNAAEGLSPWRRLITPALGGLAAGLLLWGWQKMNQQRPHAPTDYMEALQ TDGQFDVGASLVKSLASLLVVVSGSAIGREGAMILLAALAASSFARRFTPREEWKLWI ASGAAAGMAGAYHAPLAGSLFIAEILFGTLMLASLGPVVVSAVVALLTTHVLNGSDSL LYTVHLTVDLHAREYVMIVSTGLVAGLCGPLLMWLMTASHNSFLRLKLSPPWQLALGG LIVGLLSLLTPTVWGNGYSVVQSFLLSPPLFSLIGGIFVCKILAVLASSGSGAPGGVF TPTLFVGLSIGMFLGRIWGFWLPGSDEIAILLGLAGMATLLAATTHAPIMSTLMICEM TGEYQLLPGLLIACVVASVLSRTLRHDSIYRQHAAEH" misc_feature complement(1567094..1568344) /locus_tag="STM1490" /note="putative voltage-gated ClC-type chloride channel ClcB; Provisional; Region: PRK01610" /db_xref="CDD:234963" misc_feature complement(order(1567373..1567387,1567979..1567993, 1568081..1568095)) /locus_tag="STM1490" /note="Cl- selectivity filter [active]" /db_xref="CDD:238233" misc_feature complement(order(1567379..1567387,1567982..1567987, 1568084..1568086,1568090..1568092)) /locus_tag="STM1490" /note="Cl- binding residues [ion binding]; other site" /db_xref="CDD:238233" misc_feature complement(1567985..1567987) /locus_tag="STM1490" /note="pore gating glutamate residue [active]" /db_xref="CDD:238233" misc_feature complement(order(1567160..1567165,1567184..1567186, 1567208..1567210,1567232..1567234,1567241..1567243, 1567760..1567762,1567781..1567783,1567826..1567828, 1567853..1567855)) /locus_tag="STM1490" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238233" gene complement(1568516..1569670) /locus_tag="STM1491" /db_xref="GeneID:1253009" CDS complement(1568516..1569664) /locus_tag="STM1491" /note="ATPase component; similar to E. coli putative ATP-binding component of a transport system (AAC75190.1); Blastp hit to AAC75190.1 (308 aa), 41% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="ABC-type proline/glycine betaine transport system" /protein_id="NP_460451.1" /db_xref="GeneID:1253009" /translation="MIKLENLTKQFVQKKGQPLKAVDNVNLNVPEGEMCVLLGPSGCG KTTTLKMINRLIAPSSGNILINGENTNDMDAVTLRRNIGYVIQQIGLFPNMTIEENIT VVPRMLGWDKARCKQRAEELMDMVALDARKFLHRYPKEMSGGQQQRIGVIRALAADPP VLLMDEPFGAVDPINREVIQNQFLDMQRKLKKTVMLVSHDIDEALKLGDRIAVFRQGR IVQCASPDELLAKPANEFVGSFVGQDRTLKRLLLVSAGDVTDQQPTITARPSTPLSEA FGIMDDHDIRAITVIDNDGKPLGFVKRREARNASGICADITHPFRITGKAEDNLRIVL SRLYESNTSWMPIVDEDGRYNGEISQDYIADYLSSGRTRRALNIHENS" misc_feature complement(1568732..1569664) /locus_tag="STM1491" /note="ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]; Region: OpuBA; COG1125" /db_xref="CDD:440742" misc_feature complement(1568561..1568893) /locus_tag="STM1491" /note="Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains found associated with the ABC transporter OpuCA; Region: CBS_pair_ABC_OpuCA_assoc; cd04582" /db_xref="CDD:341359" misc_feature complement(order(1568570..1568572,1568579..1568584, 1568588..1568590,1568594..1568596,1568633..1568635, 1568798..1568806,1568873..1568881,1568885..1568887)) /locus_tag="STM1491" /note="putative ligand binding site II [chemical binding]; other site" /db_xref="CDD:341359" misc_feature complement(1568714..1568887) /locus_tag="STM1491" /note="CBS repeat [structural motif]; Region: CBS repeat" /db_xref="CDD:341359" misc_feature complement(order(1568582..1568584,1568627..1568635, 1568699..1568701,1568741..1568743,1568750..1568755, 1568765..1568767,1568804..1568806)) /locus_tag="STM1491" /note="putative ligand binding site I [chemical binding]; other site" /db_xref="CDD:341359" misc_feature complement(1568570..1568701) /locus_tag="STM1491" /note="CBS repeat [structural motif]; Region: CBS repeat" /db_xref="CDD:341359" gene complement(1569664..1570318) /locus_tag="STM1492" /db_xref="GeneID:1253010" CDS complement(1569664..1570311) /locus_tag="STM1492" /note="inner membrane component; similar to E. coli putative transport system permease protein (AAC75189.1); Blastp hit to AAC75189.1 (243 aa), 36% identity in aa 47 - 239" /codon_start=1 /transl_table=11 /product="putative binding-protein-dependent transport system" /protein_id="NP_460452.1" /db_xref="GeneID:1253010" /translation="MDTIHYMLDNAGYLASLTFQHLWLVALAVGLAIIIGVPLGVLIV RHKWLATPVLGAATLLLTIPSIALFGLMIPLFSLIGHGIGVLPAVTAVFLYSLLPIVR NTHTALDSLPPGLREAGRGIGMTFWQRLRWVEIPMALPVIFGGIRTAVVMNIGVMAIA AVIGAGGLGLLLLNGISGSDIRMLIAGALMICLLAIVLDWLLHRLQVVLTPKGIR" misc_feature complement(1569667..1570302) /locus_tag="STM1492" /note="ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]; Region: OpuBB; COG1174" /db_xref="CDD:440787" regulatory complement(1569665..1569670) /regulatory_class="ribosome_binding_site" /locus_tag="STM1492" /note="putative RBS for STM1491; RegulonDB:STMS1H001708" regulatory complement(1570313..1570318) /regulatory_class="ribosome_binding_site" /locus_tag="STM1492" /note="putative RBS for STM1492; RegulonDB:STMS1H001709" gene complement(1570321..1571230) /locus_tag="STM1493" /db_xref="GeneID:1253011" CDS complement(1570321..1571223) /locus_tag="STM1493" /note="ABC transport system; similar to E. coli putative transport system permease protein (AAC75192.1); Blastp hit to AAC75192.1 (305 aa), 28% identity in aa 9 - 302" /codon_start=1 /transl_table=11 /product="putative periplasmic component" /protein_id="NP_460453.1" /db_xref="GeneID:1253011" /translation="MRFKKHLLGWLAATLLFSSQTQAAPLVLATKSFTEQHILSAMTV QYLQKKGFQVQPQTNIAAVISRNAMVNKQIDITWEYTGTSLIIFNRIDKRMSPQETYD TVKRLDAKLGLVWLKPADMNNTYAFAMQRKRAESENITTISQMVAKIEQVRQNDPDHN WMLGLDLEFAGRSDGMKPLQQAYQMQLDRPQIRQMDPGLVYNAVRDGLVDAGLVYTTD GRVKGFDLKVLEDDKGFFPSYAVTPVVRKEVLEANPGLDDALNTLSGLLNNDVISTLN AQVDIEHRTPQQVAHQFLQDKGLL" misc_feature complement(1570339..1571151) /locus_tag="STM1493" /note="Substrate-binding domain YehZ of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold; Region: PBP2_YehZ; cd13611" /db_xref="CDD:270329" misc_feature complement(order(1570507..1570509,1570579..1570581, 1570849..1570851,1570855..1570857,1570975..1570977, 1570984..1570989,1571125..1571127,1571131..1571133)) /locus_tag="STM1493" /note="putative chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270329" regulatory complement(1571225..1571230) /regulatory_class="ribosome_binding_site" /locus_tag="STM1493" /note="putative RBS for STM1493; RegulonDB:STMS1H001710" gene complement(1571252..1571968) /locus_tag="STM1494" /db_xref="GeneID:1253012" CDS complement(1571252..1571962) /locus_tag="STM1494" /note="permease components; similar to E. coli putative transport system permease protein (AAC75189.1); Blastp hit to AAC75189.1 (243 aa), 43% identity in aa 42 - 241" /codon_start=1 /transl_table=11 /product="ABC-type transport system protein" /protein_id="NP_460454.1" /db_xref="GeneID:1253012" /translation="MHTLTLKRVLGFTIVILLLLALFIWGIGLETLKARQVDLLYLGQ RHLMLVFTSMFFALLVGIPSGILLSRPAAKGFAEYVMQIFNVGNTLPPLAVLALAMVI IGIGDTPAIVALFLASLLPIVRNTYAGLCSVPASLIEAANGIGMTKWQRLRQVELPNA WPVMLSGIRIATAINVGTAPLAFLIGASSYGELIFPGIYLNDFPTLILGATATALFAL ILDTLLAWFGRRLSPHTV" misc_feature complement(1571255..1571878) /locus_tag="STM1494" /note="ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]; Region: OpuBB; COG1174" /db_xref="CDD:440787" regulatory complement(1571963..1571968) /regulatory_class="ribosome_binding_site" /locus_tag="STM1494" /note="putative RBS for STM1494; RegulonDB:STMS1H001711" gene complement(1572267..1572881) /gene="ynfI" /locus_tag="STM1495" /db_xref="GeneID:1253013" CDS complement(1572267..1572881) /gene="ynfI" /locus_tag="STM1495" /note="similar to E. coli putative oxidoreductase component (AAC74663.1); Blastp hit to AAC74663.1 (207 aa), 76% identity in aa 4 - 207" /codon_start=1 /transl_table=11 /product="putative component of anaerobic dehydrogenases" /protein_id="NP_460455.1" /db_xref="GeneID:1253013" /translation="MTTFLQRDDFAVTARVLGALFYYSPESHETAPLVQALLNDDWQA QWPLDAEALAPVAAMFKTHSEESLPQAWQRLFIGPYALPSPPWGSVWLDRESVLFGDS TLALRQWMRENGIQFEMQQNEPEDHFGSLLLLAAWLAENDRHHECEQLLAWHLFPWSS RFLDVFIDHAGHPFYQALGQLARLTLAQWQAQLIIPVAVKPLFR" misc_feature complement(1572270..1572881) /gene="ynfI" /locus_tag="STM1495" /note="Tat proofreading chaperone DmsD; Region: PRK11621" /db_xref="CDD:236938" gene complement(1572924..1573794) /locus_tag="STM1496" /db_xref="GeneID:1253014" CDS complement(1572924..1573781) /locus_tag="STM1496" /note="similar to E. coli putative DMSO reductase anchor subunit (AAC74662.1); Blastp hit to AAC74662.1 (284 aa), 76% identity in aa 1 - 284" /codon_start=1 /transl_table=11 /product="putative dimethylsulfoxide reductase" /protein_id="NP_460456.1" /db_xref="GeneID:1253014" /translation="MGSGWHEWPLMIFTVFGQCVVGALIVSGLGWLTAKDDTIARQRI VRSMFFLWLVMGLGFLASIMHLGSPMRAFNSLNRVGASALSNEIAAGSVFFAVGGIWW LVAVLGKMPPALGKVWLLVSMALGVAFIWAMTLVYQIDTVPTWYNGYTTLAFFLTAFL CGPVFAALLLRIARVPFCSVTFASISGLALVVCVTVIVLQGLSLSTIHSSVQQASHLA PDYGMLQVWRIVLLAAGLGCWLCPLIRRREPHTVGLLLGVVLVLAGEIIGRGLFYGLH MTVGMAVAG" misc_feature complement(1572957..1573781) /locus_tag="STM1496" /note="DMSO reductase anchor subunit (DmsC); Region: DmsC; pfam04976" /db_xref="CDD:398575" gene complement(1573783..1574412) /locus_tag="STM1497" /db_xref="GeneID:1253015" CDS complement(1573783..1574400) /locus_tag="STM1497" /EC_number="1.8.99.-" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); Blastp hit to AAC73981.1 (205 aa), 96% identity in aa 1 - 205" /codon_start=1 /transl_table=11 /product="putative dimethyl sulfoxide reductase" /protein_id="NP_460457.1" /db_xref="GeneID:1253015" /translation="MTTQYGFFIDSSRCTGCKTCELACKDYKDLTPDVSFRRIYEYAG GDWQEDNGVWHQNVFAYYLSISCNHCEDPACTKVCPSGAMHKRDDGFVVVNEEVCIGC RYCHMACPYGAPQYNAAKGHMTKCDGCYDRVADGKKPICVESCPLRALDFGPIDELRK KHGELAAVAPLPRAHFTKPNIVIKPNANSRPTGDTTGYLANPKEV" misc_feature complement(1573912..1574391) /locus_tag="STM1497" /note="DMSO reductase, iron-sulfur subunit; Region: DMSO_dmsB; TIGR02951" /db_xref="CDD:131996" regulatory complement(1573789..1573794) /regulatory_class="ribosome_binding_site" /locus_tag="STM1497" /note="putative RBS for STM1496; RegulonDB:STMS1H001712" regulatory complement(1574407..1574412) /regulatory_class="ribosome_binding_site" /locus_tag="STM1497" /note="putative RBS for STM1497; RegulonDB:STMS1H001713" gene complement(1574411..1576846) /locus_tag="STM1498" /db_xref="GeneID:1253016" CDS complement(1574411..1576846) /locus_tag="STM1498" /EC_number="1.8.99.-" /note="similar to E. coli putative oxidoreductase, major subunit (AAC74660.1); Blastp hit to AAC74660.1 (808 aa), 91% identity in aa 2 - 807" /codon_start=1 /transl_table=11 /product="putative dimethyl sulfoxide reductase" /protein_id="NP_460458.1" /db_xref="GeneID:1253016" /translation="MKITNPEALMAASLSRRSLVKTSAIGSLALASSAFTLPFSRIAH AAADLASGNVAEKAVWSSCTVNCGSRCLLRLHVKDDTVYWVESDTTGNDEYGNHQVRA CLRGRSIRRRMNHPDRLKYPMKRVGKRGEGKFERISWDEALDTIGDNLKRILKDYGNE AVHVLYGTGVDGGNITNSNVPYRLMNACGGYLSRYGSYSTAQISAAMSYMFGGNDGNS PDDIANTKLVVMFGNNPAETRMSGGGVTYYVEQARERSNARMIVIDPRYNDTAAGRED EWLPIRPGTDGALAAAIAWVLITEDLIDKPFLDKYCIGYDETTLPASAPRNAHYKAYI LGQGDDGIAKTPQWAAQITSIPAEKIIQLAREIGSAKPAYICQGWGPQRHSNGEQTAR AIAMLSVLTGNVGINGGNSGVREGTWDLGVEWFSMLENPVKTQISVFTWTDAIDHGAE MTATRDGVRGKDKLDVPIKFLWCYASNTLINQHGDIAHTHEVLQDDSKCEMIVGIEHF MTASAKYCDILLPDLMPTEQEDLISHESAGNMGYVILGQPATSPKFERKPIYWTLSEV AKRLGPDVYQTFTEGRTQHEWVKYLHAKTKARNPEMPDYEEMKQTGIFKKKCPEEHYV AFRAFREDPAANPLKTPSGKIEIYSERLATLANTWELKKDEIIHPLPAYTPGFDGWDD PLRQRYPLQLTGFHYKARTHSSYGNIDILQQACPQEIWINPIDAQARGIQHGDTVRVF NQNGEMLIPAKVTPRILPGVTAIGQGAWLNADMFGDKVDRGGSINILTSHRPSPLAKG NPSHSNLVQVEKA" misc_feature complement(1574414..1576807) /locus_tag="STM1498" /note="anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Region: dmsA_ynfE; TIGR02166" /db_xref="CDD:274006" gene complement(1576945..1579395) /locus_tag="STM1499" /db_xref="GeneID:1253017" CDS complement(1576945..1579386) /locus_tag="STM1499" /EC_number="1.8.99.-" /note="similar to E. coli putative oxidoreductase, major subunit (AAC74659.1); Blastp hit to AAC74659.1 (808 aa), 86% identity in aa 1 - 808" /codon_start=1 /transl_table=11 /product="putative dimethyl sulfoxide reductase, chain A1" /protein_id="NP_460459.1" /db_xref="GeneID:1253017" /translation="MMPGEKQQTGVSRRTLVKSAALGSLALAAGGVSLPFGMRTAAAA VQQAMRNEEDKIVWGACSVNCGSRCALRLHVKDNEVWWVETDNTGDDVYGNHQVRACL RGRSIRRRINHPDRLNYPMKRVGRRGEGKFERISWQEALDTISASLKKTVETYGNEAV YIHYSSGIVGGNITRSSPAASPVKRLMNCYGGSLNQYGSYSTAQISCAMPYTYGSNDG NSTSDIENSKLVVMFGNNPAETRMSGGGITWFLEQARERSNARMIVIDPRYTDTAAGR EDEWIPIRPGTDAALVAGIAWVLINENLVDQPFLDNYCIGYDEKTLPADAPPNGHYKA YILGQGEDGIAKTPQWASHITGIPADRIIKLAREIGSVKPAYICQGWGPQRQANGEQT ARAIAMLPILTGNVGIHGGNSGARESTYTITIERLPVLENPVKTAISCFSWTDAIARG PEMTALRDGVRGKDKLDVPIKFLWNYAGNTLINQHSDINKTHEILQDEAKCEMIVVID NFMTSSAKYADILLPDLMTVEQEDIIPNDYAGNMGYLIFIQPATTPKFERKPIYWVLS EIARRLGDDVYQRFTEGRTQAQWLQYLYAKMQARDPALPAYDDLKKMGIYKRKDPNGH FVAYKKFREDPQANPLKTPSGKIEIYSSKLAHIASTWELAEGDVISPLPIYTPTFEGW DDPKRSTFPLQLFGFHYKSRTHSSYGNIDVLQAACRQEVWINPLDAQKRGIANGDKVR VFNDRGEVRLPAKVTPRILPGVSAMGQGAWHNADMAGDKIDHGACINTLTTLRPSPLA KGNPQHTNLVEIEKI" misc_feature complement(1576948..1579356) /locus_tag="STM1499" /note="anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Region: dmsA_ynfE; TIGR02166" /db_xref="CDD:274006" regulatory complement(1579390..1579395) /regulatory_class="ribosome_binding_site" /locus_tag="STM1499" /note="putative RBS for STM1499; RegulonDB:STMS1H001714" gene complement(1579540..1579857) /gene="ynfD" /locus_tag="STM1500" /db_xref="GeneID:1253018" CDS complement(1579540..1579848) /gene="ynfD" /locus_tag="STM1500" /note="similar to E. coli orf, hypothetical protein (AAC74658.1); Blastp hit to AAC74658.1 (115 aa), 71% identity in aa 14 - 115" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_460460.1" /db_xref="GeneID:1253018" /translation="MMKIATAIAALALVSAPSLVMAAPGSCERVKSDIEQRIINNGVP ADNFTLTIVPNDQADQPDSQVVGHCANDTHKILYTRTSSGNAPANTSPAQDGSSAEPQ " misc_feature complement(1579609..1579770) /gene="ynfD" /locus_tag="STM1500" /note="Protein of unknown function (DUF1161); Region: DUF1161; pfam06649" /db_xref="CDD:429051" regulatory complement(1579852..1579857) /regulatory_class="ribosome_binding_site" /gene="ynfD" /locus_tag="STM1500" /note="putative RBS for ynfD; RegulonDB:STMS1H001715" gene 1579943..1580662 /gene="ynfC" /locus_tag="STM1501" /db_xref="GeneID:1253019" CDS 1579943..1580662 /gene="ynfC" /locus_tag="STM1501" /note="similar to E. coli orf, hypothetical protein (AAC74657.1); Blastp hit to AAC74657.1 (248 aa), 72% identity in aa 13 - 248" /codon_start=1 /transl_table=11 /product="putative inner membrane lipoprotein" /protein_id="NP_460461.3" /db_xref="GeneID:1253019" /translation="MIRVKKPLLLTLLCMILAGCDNPKSLESFTPEMASFSNEFDFDP LRGPVKDFSQTLMSENGEVAKQVTGTLSQEGCFDTLELHDLENNTGLALVLDANYYRD AQTLEKKVQLQGKCQLAALPSAGVTWETDDNGFVVSATGKEMKVEYRYDSEGYPLGKT TINSQNTLSVTAKPSADPRKKLDYTAVSRVDDRQVGNVTQSCEYDAYANPVDCRLVIV DESVKPAVSHHYTIKNRIDYY" misc_feature 1579952..1580659 /gene="ynfC" /locus_tag="STM1501" /note="YnfC family lipoprotein; Region: PRK02939" /db_xref="CDD:179506" gene complement(1580703..1581274) /gene="speG" /locus_tag="STM1502" /db_xref="GeneID:1253020" CDS complement(1580703..1581263) /gene="speG" /locus_tag="STM1502" /EC_number="2.3.1.57" /note="similar to E. coli spermidine N1-acetyltransferase (AAC74656.1); Blastp hit to AAC74656.1 (186 aa), 91% identity in aa 1 - 186" /codon_start=1 /transl_table=11 /product="spermidine N1-acetyltransferase" /protein_id="NP_460462.1" /db_xref="GeneID:1253020" /translation="MTSDYKVRLRPLEREDLRFVHQLDNNASVMRYWFEEPYEAFVEL SDLYDKHIHDQSERRFVVECDGENAGLVELVEINHVHRRAEFQIIISPEYQGKGLASR AAKLAMDYGFTVLNLYKLYLIVDKENEKAIHIYRKLGFRVEGELIHEFFINGEYRNTI RMCIFQQQYLDEHKTSGSTLLKPTAQ" misc_feature complement(1580706..1581263) /gene="speG" /locus_tag="STM1502" /note="spermidine N1-acetyltransferase; Provisional; Region: PRK15130" /db_xref="CDD:237916" misc_feature complement(order(1580961..1580966,1580994..1581002)) /gene="speG" /locus_tag="STM1502" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" regulatory complement(1581269..1581274) /regulatory_class="ribosome_binding_site" /gene="speG" /locus_tag="STM1502" /note="putative RBS for speG; RegulonDB:STMS1H001716" gene complement(1581299..1581652) /gene="ynfB" /locus_tag="STM1503" /db_xref="GeneID:1253021" CDS complement(1581299..1581640) /gene="ynfB" /locus_tag="STM1503" /note="similar to E. coli orf, hypothetical protein (AAC74655.1); Blastp hit to AAC74655.1 (113 aa), 81% identity in aa 1 - 113" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460463.1" /db_xref="GeneID:1253021" /translation="MNNTLSKRLCLTAMLTLAAVVYTTSAFAETSKLVIESGDSAQSR QEAAMEKEQWNDTRSLRQKVNTRAEKEWDKADAAFDNRDKCEQSANINAYWEPNTLRC LDRRTGRVITP" misc_feature complement(1581302..1581610) /gene="ynfB" /locus_tag="STM1503" /note="DUF1283 family protein; Region: PRK13659" /db_xref="CDD:184216" regulatory complement(1581647..1581652) /regulatory_class="ribosome_binding_site" /gene="ynfB" /locus_tag="STM1503" /note="putative RBS for ynfB; RegulonDB:STMS1H001717" gene 1581793..1582119 /gene="ynfA" /locus_tag="STM1504" /db_xref="GeneID:1253022" CDS 1581793..1582119 /gene="ynfA" /locus_tag="STM1504" /note="similar to E. coli orf, hypothetical protein (AAC74654.1); Blastp hit to AAC74654.1 (108 aa), 88% identity in aa 1 - 108" /codon_start=1 /transl_table=11 /product="putative inner membrane lipoprotein" /protein_id="NP_460464.1" /db_xref="GeneID:1253022" /translation="MLKTTLLFFVTALCEIIGCFLPWLWLKRGASVWWLLPAAASLAL FVWLLTLHPAASGRVYAAYGGVYVCTALLWLRVVDGVRLTVYDWCGALIALCGMLIIV VGWGRT" misc_feature 1581793..1582107 /gene="ynfA" /locus_tag="STM1504" /note="Uncharacterized inner membrane protein YnfA, drug/metabolite transporter superfamily [General function prediction only]; Region: YnfA; COG1742" /db_xref="CDD:441348" gene 1582230..1583455 /gene="rspA" /locus_tag="STM1505" /db_xref="GeneID:1253023" regulatory 1582230..1582235 /regulatory_class="ribosome_binding_site" /gene="rspA" /locus_tag="STM1505" /note="putative RBS for rspA; RegulonDB:STMS1H001718" CDS 1582241..1583455 /gene="rspA" /locus_tag="STM1505" /note="similar to E. coli starvation sensing protein (AAC74653.1); Blastp hit to AAC74653.1 (404 aa), 94% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="putative dehydratase" /protein_id="NP_460465.1" /db_xref="GeneID:1253023" /translation="MKIVGAEVFVTCPGRNFVTLKITTEDGITGLGDATLNGRELPVA SYLTDHLCPQLIGRDARRIEDIWQFFYKGAYWRRGPVTMSAISAVDMALWDIKAKAAN MPLYQLLGGASREGVMVYCHTTGHTIDDVLEDYARHKEQGFKAIRVQCGVPGMKTTYG MAKGKGLAYEPATKGQWPEEQLWSTEKYLDFTPKLFDAVRNTFGFNEHLLHDMHHRLT PIEAARFGKCIEDYRLFWMEDPTPAENQACFRLIRQHTVTPIAVGEVFNSIWDCKQLI EEQLIDYIRTTLTHAGGITGMRRIADFASLYQVRTGSHGPSDLSPVCMAAALHFDLWV PNFGVQEFMGYSEQMLEVFPHNWTFEGGYMHPGDKPGLGIEFDEKLAAKYPYDPAYLP VARLEDGTLWNW" misc_feature 1582241..1583452 /gene="rspA" /locus_tag="STM1505" /note="D-galactonate dehydratase family protein; Region: PRK15072" /db_xref="CDD:237901" misc_feature order(1582598..1582600,1582679..1582681,1582685..1582687, 1582874..1582876,1582946..1582948,1582952..1582954, 1583030..1583032,1583099..1583101,1583180..1583182, 1583261..1583263) /gene="rspA" /locus_tag="STM1505" /note="putative active site pocket [active]" /db_xref="CDD:239438" misc_feature order(1582874..1582876,1582952..1582954,1583030..1583032) /gene="rspA" /locus_tag="STM1505" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:239438" gene 1583454..1584485 /gene="rspB" /locus_tag="STM1506" /db_xref="GeneID:1253024" regulatory 1583454..1583459 /regulatory_class="ribosome_binding_site" /gene="rspB" /locus_tag="STM1506" /note="putative RBS for rspB; RegulonDB:STMS1H001719" CDS 1583466..1584485 /gene="rspB" /locus_tag="STM1506" /EC_number="1.1.1.-" /note="similar to E. coli starvation sensing protein (AAC74652.1); Blastp hit to AAC74652.1 (339 aa), 75% identity in aa 1 - 339" /codon_start=1 /transl_table=11 /product="putative dehydrogenase" /protein_id="NP_460466.1" /db_xref="GeneID:1253024" /translation="MKSIVIEKPNTLTIETRALPQPAPGEVRIKVKLAGICGSDSHIY RGHNPFAKYPRVIGHEFFGVIDAVGDNVNHDRIGERVSVDPVISCGHCYPCSVGKPNV CTSLVVLGVHRDGGFSEYAVAPARNAHRIPDNIADHHAVMVEPFTIAANVTGQVNPTE QDVALIYGAGPMGLTTVQALKGVYQVKTVIVVDRIEERLAMAKQSGADWTLNNGQHSL AEFLQQKALKPTLIVDAACHPAILQEAITLASPAARIVLMGFSSDPCEIVQQGITGKE LAIYSSRLNANKFPVVIDWLNKGLIDPDKLITHTFDYQHVTDAIELFEKDQRQCCKVL LTFAK" misc_feature 1583466..1584482 /gene="rspB" /locus_tag="STM1506" /note="putative oxidoreductase; Provisional; Region: PRK10083" /db_xref="CDD:182229" gene 1584539..1585516 /gene="ydfJ" /locus_tag="STM1507" /db_xref="GeneID:2673769" CDS 1584539..1585516 /gene="ydfJ" /locus_tag="STM1507" /note="similar to E. coli putative transport protein (AAC74616.1); Blastp hit to AAC74616.1 (427 aa), 86% identity in aa 1 - 293" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_447926.1" /db_xref="GeneID:2673769" /translation="MTQIKHERSTQDLVRAAVSGWLGTALEFMDFQLYSLGAALVFHE IFFPEQSAAMALILAMGTYGAGYIARIIGAFVFGKMGDRIGRKKVLFITITMMGICTT LIGVLPTYAQIGIFAPVLLVTLRIIQGLGAGAEISGAGTMLAEYAPKGKRGIISSLVA MGTNCGTLSATAIWAVMFFALEREQLIAWGWRIPFLASVVVMIFAIWLRMNLKESPVF EKVSEGEKSPALTPASENTLGAMFTSKSFWLATGLRFGQAGNSGLIQTFLAGYLVQTL LFNKSIPTDALMISSVIGFITIPLLGWLSDKYGRRLPYIILNISAIILA" misc_feature 1584581..>1585513 /gene="ydfJ" /locus_tag="STM1507" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" gene 1586051..1587528 /gene="ydfI" /locus_tag="STM1508" /db_xref="GeneID:1253026" regulatory 1586051..1586056 /regulatory_class="ribosome_binding_site" /gene="ydfI" /locus_tag="STM1508" /note="putative RBS for ydfI; RegulonDB:STMS1H001720" CDS 1586062..1587528 /gene="ydfI" /locus_tag="STM1508" /note="similar to E. coli putative oxidoreductase (AAC74615.1); Blastp hit to AAC74615.1 (486 aa), 81% identity in aa 1 - 484" /codon_start=1 /transl_table=11 /product="putative mannitol dehydrogenase" /protein_id="NP_460468.1" /db_xref="GeneID:1253026" /translation="MQNRLLSAKATLPDYDRAALAARMVHLGFGAFHRAHQGVYTDIL AAEQHSDWGYYEVNLIGGEQQIADLKQQDNLYTVAEMSAEAWTARVVGVVKAALHVQV DGLERVLAAMCEPQIAIVSLTITEKGYCHSPATGQLLLEHPMIAADLQNPHQPLTAPG IIVEALARRKAAGLPAFTVMSCDNMPENGHVTRQVVTAYAREVDAELAIWIEQNVTFP STMVDRIVPAVTPETLDKIEQLTGVRDPAGVACEPFRQWVIEDTFVAGRPLWENAGAT LVADVVPFEEMKLRMLNGSHSFLAYLGYLAGYQHINDCMADDNYRLTAQALMLREQAP TLKVQGVDLQRYADQLIARYRNPALRHRTWQIAMDGSQKLPQRMLDSVRWHLANHSDF DLLALGVAGWMRYVGGVDEQGKAIDVSDPLLPVIQRAVANSEEGASRVKALLGMAEIF GNDLPQAARFTQKVQEAYDSLLTYGAKASVAKYAERLK" misc_feature 1586077..1587516 /gene="ydfI" /locus_tag="STM1508" /note="Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]; Region: MtlD; COG0246" /db_xref="CDD:440016" gene complement(1587595..1587812) /gene="ydfZ" /locus_tag="STM1509" /db_xref="GeneID:1253027" CDS complement(1587595..1587798) /gene="ydfZ" /locus_tag="STM1509" /note="similar to E. coli orf, hypothetical protein (AAC74614.1); Blastp hit to AAC74614.1 (67 aa), 79% identity in aa 1 - 67" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460469.1" /db_xref="GeneID:1253027" /translation="MMTYDRNRNAITTGSRVMISGTGHTGIIKAIESEGLDAGQIRRG KTVIVEGCEGKFAPVELIRLGMN" misc_feature complement(1587604..1587798) /gene="ydfZ" /locus_tag="STM1509" /note="putative selenium-binding protein YdfZ; Region: YdfZ_fam; TIGR03318" /db_xref="CDD:132361" regulatory complement(1587807..1587812) /regulatory_class="ribosome_binding_site" /gene="ydfZ" /locus_tag="STM1509" /note="putative RBS for ydfZ; RegulonDB:STMS1H001721" gene complement(1587979..1588673) /gene="ydfH" /locus_tag="STM1510" /db_xref="GeneID:1253028" CDS complement(1587979..1588665) /gene="ydfH" /locus_tag="STM1510" /note="similar to E. coli orf, hypothetical protein (AAC74613.1); Blastp hit to AAC74613.1 (228 aa), 86% identity in aa 1 - 228" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_460470.1" /db_xref="GeneID:1253028" /translation="MTVETQLNPTQPVNQQIYRILRRDIVHCLIPPGTPLSEKEVSTR FNVSRQPVREAFIKLAENGLIQIRPQRGSYVNKISLSQVQNGCFVRQAIECAVVRRAA AMITDNQCYQLAQNLHLQHIAIERKQIDDFFQLDDDFHQKLAQIADCQLAWDTIENIK ATIDRVRYMSLDHVSPPEMLLRQHHDIFSALENRDGNAVESAMTQHLQEISESVQLIR QENSGWFSEE" misc_feature complement(1588021..1588665) /gene="ydfH" /locus_tag="STM1510" /note="DNA-binding transcriptional regulator, GntR family [Transcription]; Region: GntR; COG1802" /db_xref="CDD:441407" regulatory complement(1588668..1588673) /regulatory_class="ribosome_binding_site" /gene="ydfH" /locus_tag="STM1510" /note="putative RBS for ydfH; RegulonDB:STMS1H001722" gene complement(1588795..1589554) /gene="ydfG" /locus_tag="STM1511" /db_xref="GeneID:1253029" CDS complement(1588795..1589541) /gene="ydfG" /locus_tag="STM1511" /EC_number="1.-.-.-" /note="similar to E. coli putative oxidoreductase (AAC74612.1); Blastp hit to AAC74612.1 (248 aa), 88% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_460471.1" /db_xref="GeneID:1253029" /translation="MIVLVTGATAGFGECIARRFVENGHKVIATGRRHERLQALKDEL GENVLTAQLDVRNRAAIEEMMASLPAQWRDIDVLVNNAGLALGLEPAHKASVEDWETM IDTNNKGLIYMTRAVLPGMVERNRGHIINIGSTAGSWPYAGGNVYGATKAFVRQFSLN LRTDLHGTAVRVTDIEPGLVGGTEFSSVRFKGDDEKAGKTYENTTALTPEDITEAVWW VATLPAHVNINTVEMMPVTQSFAGLSVHRS" misc_feature complement(1588798..1589541) /gene="ydfG" /locus_tag="STM1511" /note="bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG; Region: PRK10538" /db_xref="CDD:182531" misc_feature complement(order(1588990..1588995,1589002..1589013, 1589089..1589091,1589101..1589103,1589140..1589148, 1589227..1589229,1589293..1589301,1589377..1589385, 1589443..1589451,1589506..1589517,1589521..1589523)) /gene="ydfG" /locus_tag="STM1511" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187604" misc_feature complement(order(1588804..1588806,1589041..1589046, 1589050..1589055,1589059..1589064,1589071..1589076, 1589083..1589088,1589092..1589100,1589104..1589136, 1589176..1589178,1589188..1589190,1589197..1589199, 1589206..1589211,1589218..1589223,1589230..1589235, 1589242..1589247,1589251..1589256,1589269..1589274, 1589368..1589370)) /gene="ydfG" /locus_tag="STM1511" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187604" misc_feature complement(order(1588804..1588857,1588861..1588863, 1588867..1588869,1588888..1588890,1588909..1588911, 1589050..1589058,1589062..1589067,1589074..1589076, 1589083..1589088,1589092..1589097,1589107..1589118, 1589122..1589133,1589197..1589199,1589206..1589208, 1589218..1589220,1589230..1589232,1589242..1589247, 1589251..1589256,1589269..1589271,1589368..1589370)) /gene="ydfG" /locus_tag="STM1511" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187604" misc_feature complement(order(1589089..1589091,1589101..1589103, 1589140..1589142,1589224..1589226)) /gene="ydfG" /locus_tag="STM1511" /note="active site" /db_xref="CDD:187604" regulatory complement(1589549..1589554) /regulatory_class="ribosome_binding_site" /gene="ydfG" /locus_tag="STM1511" /note="putative RBS for ydfG; RegulonDB:STMS1H001723" gene 1589668..1591722 /gene="dcp" /locus_tag="STM1512" /db_xref="GeneID:1253030" regulatory 1589668..1589673 /regulatory_class="ribosome_binding_site" /gene="dcp" /locus_tag="STM1512" /note="putative RBS for dcp; RegulonDB:STMS1H001724" CDS 1589680..1591722 /gene="dcp" /locus_tag="STM1512" /EC_number="3.4.15.5" /note="peptidyl-dipeptidase DCP. (SW:DCP_SALTY)" /codon_start=1 /transl_table=11 /product="dipeptidyl carboxypeptidase II" /protein_id="NP_460472.1" /db_xref="GeneID:1253030" /translation="MSTNPLLDQSMLPYQAPRFDRIKDCHYRPAFDEGVRQKRVEIEA IVNHPAAPDFTNTLLALEQSGALLSRVTSVFFAMTAAHTNDELQRLDEAFSAELAALS NDIYLNSALFARVDAVWQQRHSLGLDDESLRLVDVIHQRFVLAGAQLAEEDKARLKVL NTESATLMSQFNQRLLAASKAGGLAVDDAHCLAGLSPEEMTVAAEAAREKGLEERWFI PLLNTTQQPALATLRDRQTRENLFAASWTRAEKGDAHDTRAIVQRLVEIRRCQAKLLG FPNYAAWKMADQMAKTPQAALSFMRGIVPPARQRVLNEQAEIQNVIDGEQGGYTVQAW DWMFYAEQVRREKYALDEAQLKPYFALNTVLQEGVFWTANQLFGITFVERFDIPVYHP DVRVWEIFDSDGVGMALFYGDFFARDSKSGGAWMGNFVEQSTLNETRPVIYNVCNYQK PVDGQPALLLWDDVITLFHEFGHTLHGLFAVQRYATLSGTNTPRDFVEFPSQINEHWA SHPRVFERYARHVDSGEKMPADLQERMRKASLFNKGYDMTELLGAALLDMRWHMLEES VAEQSVAEFEQQALAAEHLDLPAVPPRYRSSYFAHIFGGGYAAGYYAYLWTQMLADDG YQWFVEQGGLTRENGQRFRDAILARGNSTDLETLYSAWRGHEPHIDPMLQYRGLDR" misc_feature 1589680..1591719 /gene="dcp" /locus_tag="STM1512" /note="peptidyl-dipeptidase Dcp; Region: PRK10280" /db_xref="CDD:182353" gene 1592060..1592249 /locus_tag="STM1513" /db_xref="GeneID:1253031" regulatory 1592060..1592065 /regulatory_class="ribosome_binding_site" /locus_tag="STM1513" /note="putative RBS for STM1513; RegulonDB:STMS1H001725" CDS 1592067..1592249 /locus_tag="STM1513" /note="hypothetical protein (gi|6851081)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460473.1" /db_xref="GeneID:1253031" /translation="MAEHRGGSGNFAEDKEKASEAGRKGGQHSGGNFKNDPQRASEAG KKGGQNSHSGGRKSGN" misc_feature 1592073..1592240 /locus_tag="STM1513" /note="General stress protein YciG, contains tandem KGG domains [General function prediction only]; Region: GsiB; COG3729" /db_xref="CDD:442943" gene complement(1592369..1592911) /gene="ydeJ" /locus_tag="STM1514" /db_xref="GeneID:1253032" CDS complement(1592369..1592896) /gene="ydeJ" /locus_tag="STM1514" /note="similar to E. coli orf, hypothetical protein (AAC74610.1); Blastp hit to AAC74610.1 (172 aa), 61% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="putative competence-damaged protein" /protein_id="NP_460474.1" /db_xref="GeneID:1253032" /translation="MRLEQHDIVTLDEAESVDSLTKKLGDLLVNQKLRLTTAESCTGG KLASALCAAEDTPSFYGVGYVTFTDEAKAKILRVQRHSLAEHTAVSEAVVTEMAQGAK DQAEVNISIAISGYGGPEGGEDGTPAGTVWFAWNINNTTFTSRQHFNGDCQEVLEKCV RFALAELLFLLTKKA" misc_feature complement(1592414..1592881) /gene="ydeJ" /locus_tag="STM1514" /note="2-oxo-tetronate isomerase; Region: PRK03657" /db_xref="CDD:235149" regulatory complement(1592906..1592911) /regulatory_class="ribosome_binding_site" /gene="ydeJ" /locus_tag="STM1514" /note="putative RBS for ydeJ; RegulonDB:STMS1H001726" gene 1593312..1593715 /gene="ydeI" /locus_tag="STM1515" /db_xref="GeneID:1253033" regulatory 1593312..1593317 /regulatory_class="ribosome_binding_site" /gene="ydeI" /locus_tag="STM1515" /note="putative RBS for ydeI; RegulonDB:STMS1H001727" CDS 1593323..1593715 /gene="ydeI" /locus_tag="STM1515" /note="similar to E. coli orf, hypothetical protein (AAC74609.1); Blastp hit to AAC74609.1 (130 aa), 79% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460475.1" /db_xref="GeneID:1253033" /translation="MKLQVAAFLSFLIMPYALADDQGGLKKDVAPPPPHAIEDGYRGT DDAEKMTIEQAKTLHDGATVSLRGNLIDHKGDDRYVFRDKSGEINVIIPSAVFDGREV QPDQMININGSLDKKAKEPLVRVNRLQK" misc_feature 1593323..1593712 /gene="ydeI" /locus_tag="STM1515" /note="YdeI family stress tolerance OB fold protein; Region: PRK10053" /db_xref="CDD:182212" gene complement(1594407..1595602) /gene="ydeE" /locus_tag="STM1516" /db_xref="GeneID:1253034" CDS complement(1594407..1595594) /gene="ydeE" /locus_tag="STM1516" /note="similar to E. coli putative transport protein (AAC74607.1); Blastp hit to AAC74607.1 (395 aa), 76% identity in aa 1 - 395" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_460476.1" /db_xref="GeneID:1253034" /translation="MNPGLRRSTLALLASSLLLTIGRGATLPFMTIYLNRQYGLGVDL IGYALTSALTIGVIFSLGFGILADKFDKKRYMLLAIIAFACGFIAIPMVHNVVLVVLL FALINCAYSVFSTVLKAWFADNLTATTKTRIFSLNYTVLNIGWTVGPPLGTLLVMQSI NLPFWLAAICSAFPLVFIQVWVTRSVAASEGKNAAIWSPSVLLRDKALLWFTLSAFLA SFVGGAFASCISQYVMVVADSGFAEKVVAVVLPVNAVIVVSLQYAVGRRLTAVNIRPM MTTGTVFFIAGLIGFIFSGDNLFFWGLSAAVFTIGEIIYAPGEYMLIDNIAPAGMKAS YFSAQSLGWLGAAVNPLASGVILTTLPAWSLFVVLIIAIVFAWALMLKGMRITPTQQA ITC" misc_feature complement(1594410..1595594) /gene="ydeE" /locus_tag="STM1516" /note="efflux MFS transporter YdeE; Region: PRK10054" /db_xref="CDD:182213" regulatory complement(1595597..1595602) /regulatory_class="ribosome_binding_site" /gene="ydeE" /locus_tag="STM1516" /note="putative RBS for ydeE; RegulonDB:STMS1H001728" gene 1595813..1596724 /gene="ydeD" /locus_tag="STM1517" /db_xref="GeneID:1253035" regulatory 1595813..1595818 /regulatory_class="ribosome_binding_site" /gene="ydeD" /locus_tag="STM1517" /note="putative RBS for ydeD; RegulonDB:STMS1H001729" CDS 1595822..1596724 /gene="ydeD" /locus_tag="STM1517" /note="probable cysteine metabolite efflux pump. (SW:EAMA_SALTY)" /codon_start=1 /transl_table=11 /product="putative permease, integral membrane protein" /protein_id="NP_460477.1" /db_xref="GeneID:1253035" /translation="MMSRKDGFLALLVVVVWGLNFVVIKVGLHHMPPLLLAGLRFLLV AFPAIFFVARPKVPLTLLLGYGLTISFGQFAFLFCAIKFGMPAGLASLVLQAQAFFTM ALGAFVFSERLQRKQLAGIALAIIGVLVLIEASLNGQHIAMSGFMLTLAAAFSWACGN IFNKKIMQHSPRPAVMSLVVWSALIPILPFLLSSLLLEGADHITQSLITIDMTTILSL LYLAFVATILGYGIWGALLGRYETWRVAPLSLLVPVVGLASAAVLLGETLTGMQLAGA VLIMAGLYINVFGFRVRRTARVSG" misc_feature 1595825..1596721 /gene="ydeD" /locus_tag="STM1517" /note="O-acetylserine/cysteine exporter; Region: PRK11453" /db_xref="CDD:183142" gene complement(1596843..1597070) /gene="marB" /locus_tag="STM1518" /db_xref="GeneID:1253036" CDS complement(1596843..1597058) /gene="marB" /locus_tag="STM1518" /note="multiple antibiotic resistance protein MARB. (SW:MARB_SALTY)" /codon_start=1 /transl_table=11 /product="multiple antibiotic resistance protein" /protein_id="NP_460478.1" /db_xref="GeneID:1253036" /translation="MKMLFPALPGLLLIASGYGIAEQTLLPVAQNSRDVMLLPCVGDP PNDLHPVSVNSDKSDELGVPYYNDQHL" misc_feature complement(1596846..1597037) /gene="marB" /locus_tag="STM1518" /note="multiple antibiotic resistance protein MarB; Region: PRK10106" /db_xref="CDD:236651" regulatory complement(1597065..1597070) /regulatory_class="ribosome_binding_site" /gene="marB" /locus_tag="STM1518" /note="putative RBS for marB; RegulonDB:STMS1H001730" gene complement(1597087..1597540) /gene="marA" /locus_tag="STM1519" /db_xref="GeneID:1253037" CDS complement(1597087..1597521) /gene="marA" /locus_tag="STM1519" /note="multiple antibiotic resistance protein MARA. (SW:MARA_SALTY)" /codon_start=1 /transl_table=11 /product="AraC/XylS family transcriptional activator of defense systems" /protein_id="NP_460479.4" /db_xref="GeneID:1253037" /translation="MSICSRKFCRRQKRGMTMSRRNTDAITIHSILDWIEDNLESPLS LEKVSERSGYSKWHLQRMFKKETGHSLGQYIRSRKMTEIAQKLKESNEPILYLAERYG FESQQTLTRTFKNYFDVPPHKYRITNMHGESRYMLPLNHGNY" misc_feature complement(1597093..1597470) /gene="marA" /locus_tag="STM1519" /note="MDR efflux pump AcrAB transcriptional activator MarA; Region: PRK11511" /db_xref="CDD:236920" gene complement(1597490..1598122) /gene="marR" /locus_tag="STM1520" /db_xref="GeneID:1253038" CDS complement(1597490..1597924) /gene="marR" /locus_tag="STM1520" /note="multiple antibiotic resistance protein MARR. (SW:MARR_SALTY); transcriptional repressor of marRAB operon" /codon_start=1 /transl_table=11 /product="multiple antibiotic resistance protein" /protein_id="NP_460480.1" /db_xref="GeneID:1253038" /translation="MKSTSDLFNEIIPLGRLIYMVNQKKDRLLNNYLSPLDITATQFK VLCSIRCAGCITPVELKKVLSVDLGALTRMLDRLLCKGWIERLPNPNDKRGVLVKLTP DGAAICEQCHQRPGQDLHQELTKNLTADEVATLEYLLKKILP" misc_feature complement(1597493..1597924) /gene="marR" /locus_tag="STM1520" /note="multiple antibiotic resistance transcriptional regulator MarR; Region: PRK11512" /db_xref="CDD:183170" regulatory complement(1597535..1597540) /regulatory_class="ribosome_binding_site" /gene="marA" /locus_tag="STM1519" /note="putative RBS for marA; RegulonDB:STMS1H001731" regulatory complement(1597933..1597938) /regulatory_class="ribosome_binding_site" /gene="marR" /locus_tag="STM1520" /note="putative RBS for marR; RegulonDB:STMS1H001732" regulatory complement(1598098..1598106) /regulatory_class="minus_10_signal" /gene="marR" /locus_tag="STM1520" /note="putative -10_signal for marR; RegulonDB:STMLTH004494" regulatory complement(1598114..1598122) /regulatory_class="minus_35_signal" /gene="marR" /locus_tag="STM1520" /note="putative -35_signal for marR; RegulonDB:STMLTH004494" gene 1598164..1598848 /gene="marC" /locus_tag="STM1521" /db_xref="GeneID:1253039" regulatory 1598164..1598169 /regulatory_class="ribosome_binding_site" /gene="marC" /locus_tag="STM1521" /note="putative RBS for marC; RegulonDB:STMS1H001733" CDS 1598183..1598848 /gene="marC" /locus_tag="STM1521" /note="multiple antibiotic resistance protein MARC. (SW:MARC_SALTY); putative MarC Transporter" /codon_start=1 /transl_table=11 /product="multiple antibiotic resistance protein" /protein_id="NP_460481.1" /db_xref="GeneID:1253039" /translation="MMDLFKAIGLGLVVLLPLANPLTTVALFLGLAGNMNSAERNRQS YMASVYVFAIMMVAYYAGQLVMNTFGISIPGLRIAGGLIVAFIGFRMLFPQQKAHESP EAKSKSEELADEPTANIAFVPLAMPSTAGPGTIAMIISSASTVRHGGEFPDWVIMVAP PIIFLAVAVILWGCLRSSGAIMRLVGKGGIEAISRLMGFLLVCMGVQFIINGVLEIIK TYH" misc_feature 1598183..1598845 /gene="marC" /locus_tag="STM1521" /note="MarC family NAAT transporter; Region: PRK10995" /db_xref="CDD:236814" gene complement(1598895..1600085) /gene="ydeA" /locus_tag="STM1522" /db_xref="GeneID:1253040" CDS complement(1598895..1600085) /gene="ydeA" /locus_tag="STM1522" /note="contributes to control of arabinose regulon; similar to E. coli putative resistance / regulatory protein (AAC74601.1); Blastp hit to AAC74601.1 (396 aa), 88% identity in aa 1 - 394" /codon_start=1 /transl_table=11 /product="MFS family L-arabinose/isopropyl-beta-D-thiogalactopyranoside export protein" /protein_id="NP_460482.1" /db_xref="GeneID:1253040" /translation="MTINPVSRKVAWLRVVTLAIAAFIFNTTEFVPVGLLSDIAESFH MQTAQVGIMLTIYAWVVAVMSLPFMLLTSQMERRKLLIYLFVLFIASHVLSFLAWNFT VLVISRIGIAFAHAIFWSITASLAIRLAPAGKRAQALSLIATGTALAMVLGLPIGRVV GQYFGWRTTFFAIGMGALITLLCLIKLLPKLPSEHSGSLKSLPLLFRRPALMSLYVLT VVVVTAHYTAYSYIEPFVQNVAGLSANFATVLLLILGGAGIIGSLVFGKLGNRHASSL VSIAIALLVVCLLLLLPAAESEAHLAILSIFWGIAIMVIGLGMQVKVLALAPDATDVA MALFSGIFNIGIGAGALVGNQVSLHWSMSAIGYIGAIPACAALVWAVLIFRKWPVTLE EQPH" misc_feature complement(1598904..1600073) /gene="ydeA" /locus_tag="STM1522" /note="putative arabinose transporter; Provisional; Region: PRK03545" /db_xref="CDD:179591" misc_feature complement(order(1599048..1599050,1599057..1599062, 1599069..1599074,1599081..1599083,1599126..1599128, 1599138..1599140,1599150..1599155,1599300..1599302, 1599312..1599314,1599396..1599398,1599405..1599413, 1599420..1599425,1599432..1599434,1599636..1599638, 1599645..1599650,1599657..1599659,1599717..1599719, 1599726..1599734,1599738..1599743,1599891..1599893, 1599987..1599989,1599996..1600001,1600008..1600013)) /gene="ydeA" /locus_tag="STM1522" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340882" gene complement(1600201..1601082) /gene="yneJ" /locus_tag="STM1523" /db_xref="GeneID:1253041" CDS complement(1600201..1601073) /gene="yneJ" /locus_tag="STM1523" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74599.1); Blastp hit to AAC74599.1 (293 aa), 84% identity in aa 1 - 283" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_460483.1" /db_xref="GeneID:1253041" /translation="MDLTQLEMFNAVALTGSITQAAAKVHRVPSNLTTRIRQLEADLG VSLFIRENQRLRLSPAGHNFLRYSQQILALVDEARMVVAGEEPQGLFSLGALESTAAV RIPALLAGYNQRYPKIQFALTTGPSGAMLDGVLEGKLNAAFIDGPLMHPGLEGIPAYQ EEMMIVAPHGHSVVSRASEVNGYNIYAFRANCSYRRHFESWFHADGATPGTIHEMESY HGMLACVIAGAGIALMPASMLNSMPGHHQVEAWPLAEKWRWLNTWLMWRRGAMTRQLE AFIELLNAQLASTD" misc_feature complement(<1600561..1601067) /gene="yneJ" /locus_tag="STM1523" /note="LysR transcriptional regulator; Provisional; Region: rbcR; CHL00180" /db_xref="CDD:177082" misc_feature complement(1600228..1600806) /gene="yneJ" /locus_tag="STM1523" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulators, YofA and SoxR, contains the type 2 periplasmic binding fold; Region: PBP2_YofA_SoxR_like; cd08442" /db_xref="CDD:176133" misc_feature complement(order(1600393..1600398,1600402..1600407, 1600423..1600440,1600702..1600722,1600726..1600728, 1600738..1600740,1600747..1600752,1600756..1600761)) /gene="yneJ" /locus_tag="STM1523" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176133" regulatory complement(1601077..1601082) /regulatory_class="ribosome_binding_site" /gene="yneJ" /locus_tag="STM1523" /note="putative RBS for yneJ; RegulonDB:STMS1H001734" gene 1601166..1602564 /gene="yneI" /locus_tag="STM1524" /db_xref="GeneID:1253042" regulatory 1601166..1601171 /regulatory_class="ribosome_binding_site" /gene="yneI" /locus_tag="STM1524" /note="putative RBS for yneI; RegulonDB:STMS1H001735" CDS 1601176..1602564 /gene="yneI" /locus_tag="STM1524" /EC_number="1.2.1.-" /note="similar to E. coli putative aldehyde dehydrogenase (AAC74598.1); Blastp hit to AAC74598.1 (470 aa), 81% identity in aa 9 - 470" /codon_start=1 /transl_table=11 /product="putative succinate-semialdehyde dehydrogenase" /protein_id="NP_460484.1" /db_xref="GeneID:1253042" /translation="MTMMTATQALSVNPATGQTLAAMPWANAQEIEHALSLAASGFKK WKMTSVAQRAQTLRDIGQALRAHAEEMAQCITREMGKPIKQARAEVTKSAALCDWYAE HGPAMLNPEPTLVENQQAVIEYRPLGVILAIMPWNFPLWQVLRGAVPILLAGNSYLLK HAPNVTGCAQMIARILAEAGTPAGVYGWVNANNEGVSQMINDPRIAAVTVTGSVRAGA AIGAQAGAALKKCVLELGGSDPFIVLNDADLELAVKAAVAGRYQNTGQVCAAAKRFIV EEGIAQAFTDRFVAAAAALKMGDPLVEENDLGPMARFDLRDELHQQVQASVAEGARLL LGGEKIAGEGNYYAATVLADVTPDMTAFRQELFGPVAAITVAKDAAHALALANDSEFG LSATIFTADDTLAAEMAARLECGGVFINGYSASDARVAFGGVKKSGFGRELSHFGLHE FCNVQTVWKNRV" misc_feature 1601176..1602561 /gene="yneI" /locus_tag="STM1524" /note="putative succinate semialdehyde dehydrogenase; Provisional; Region: PRK13968" /db_xref="CDD:184426" misc_feature order(1601572..1601586,1601608..1601610,1601653..1601655, 1601659..1601664,1601803..1601814,1601821..1601823, 1601830..1601835,1601875..1601883,1601977..1601979, 1602268..1602270,1602274..1602276,1602352..1602354, 1602466..1602468) /gene="yneI" /locus_tag="STM1524" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143418" misc_feature order(1601584..1601586,1601875..1601877,1601968..1601970, 1601977..1601979) /gene="yneI" /locus_tag="STM1524" /note="catalytic residues [active]" /db_xref="CDD:143418" gene 1602625..1603563 /gene="yneH" /locus_tag="STM1525" /db_xref="GeneID:1253043" regulatory 1602625..1602630 /regulatory_class="ribosome_binding_site" /gene="yneH" /locus_tag="STM1525" /note="putative RBS for yneH; RegulonDB:STMS1H001736" CDS 1602637..1603563 /gene="yneH" /locus_tag="STM1525" /EC_number="3.5.1.2" /note="similar to E. coli putative glutaminase (AAC74597.1); Blastp hit to AAC74597.1 (308 aa), 91% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="putative glutaminase" /protein_id="NP_460485.1" /db_xref="GeneID:1253043" /translation="MARAMDNAILETILQRVRPLIGQGKVADYIPALASVEGSKLGIA ICTVDGQHYQAGDAHERFSIQSISKVLSLVVAMRHYPEEEIWQRVGKDPSGSPFNSLV QLEMEQGIPRNPFINAGALVVCDMLQGRLSAPRQRMLEVVRALCGVSDITYDATVARS EFEHSARNAAIAWLMKSFGNFHHDVPTVLQNYFHYCALKMSCMELARTFVFLANQGEA FHLDEPVVTPMQARQINALMATSGMYQNAGEFAWRVGLPAKSGVGGGIVAIVPHEMAI AVWSPELDPAGNSLAGIAALEQLTQTLGRSVY" misc_feature 1602643..1603560 /gene="yneH" /locus_tag="STM1525" /note="glutaminase; Provisional; Region: PRK00971" /db_xref="CDD:234880" gene 1603544..1603922 /gene="yneG" /locus_tag="STM1526" /db_xref="GeneID:1253044" regulatory 1603544..1603549 /regulatory_class="ribosome_binding_site" /gene="yneG" /locus_tag="STM1526" /note="putative RBS for yneG; RegulonDB:STMS1H001737" CDS 1603563..1603922 /gene="yneG" /locus_tag="STM1526" /note="similar to E. coli orf, hypothetical protein (AAC74596.1); Blastp hit to AAC74596.1 (119 aa), 80% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460486.1" /db_xref="GeneID:1253044" /translation="MNALEPLFARLARSTFRSRFRLGIKERQYCWDKGAEVIDKHAAD FIAQRLAPAHPANDGKQTPMRGHPVFIAQHATATCCRGCLAKWHQIPQGEPLSEAQQQ YIVSVIHYWLVIQMNQR" misc_feature 1603581..1603898 /gene="yneG" /locus_tag="STM1526" /note="Domain of unknown function (DUF4186); Region: DUF4186; pfam13811" /db_xref="CDD:433496" gene 1604132..1605093 /locus_tag="STM1527" /db_xref="GeneID:1253045" regulatory 1604132..1604137 /regulatory_class="ribosome_binding_site" /locus_tag="STM1527" /note="putative RBS for STM1527; RegulonDB:STMS1H001738" CDS 1604146..1605093 /locus_tag="STM1527" /note="similar to E. coli orf, hypothetical protein (AAC74593.1); Blastp hit to AAC74593.1 (321 aa), 84% identity in aa 11 - 321" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460487.1" /db_xref="GeneID:1253045" /translation="MTVLFHQLKIIMIVRPQQHWIRLIFVWHGSVLSKIFSRLLLNFL LSIAVIIMLPWYTMLGIKFTLAPFSILGVAIAIFLGFRNNACYARYVEARHLWGQLMI ASRSILREVKTTLPDERGIEDFVRLQIAFAHCLRMTLRRQPQTQVLGNYLDQEALQKV VASHSPANRILLLMGEWLAIRRRSGKLSDILFHSLNNRLNDMSSVLAGCERIANTPVP FAYTLILHRTVYLFCIMLPFALVVDLHYMTPFISVLISYTFIALDALAEELEDPFGTE NNDLPLDAICNAIEIDLLQMNDERDIPAKRIPDKRYQLT" misc_feature 1604179..1605087 /locus_tag="STM1527" /note="Predicted membrane chloride channel, bestrophin family [Inorganic ion transport and metabolism]; Region: YneE; COG3781" /db_xref="CDD:442995" gene complement(1605149..1605691) /locus_tag="STM1528" /db_xref="GeneID:1253046" CDS complement(1605149..1605691) /locus_tag="STM1528" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_460488.1" /db_xref="GeneID:1253046" /translation="MGITIMQKTSLLFSAAAITLTLMASSASAATPTAAQNEATSTVK QEITEGINRYLYSIDKADPTLGKQLFYVSPETSFIHPRGHERGWSQIAENFYGTTMGK TFSKRTLKLDAPPAIHVYGNAAVAEFDWHFTAVRRDNGQTQHTTGRESQVWAKIPNTG WRIVHVHYSGPAKTGVGEGY" misc_feature complement(1605176..1605577) /locus_tag="STM1528" /note="Ketosteroid isomerase homolog YybH [General function prediction only]; Region: YybH; COG4319" /db_xref="CDD:443460" gene 1605534..1605866 /locus_tag="STM1529" /db_xref="GeneID:1253047" regulatory 1605534..1605539 /regulatory_class="ribosome_binding_site" /locus_tag="STM1529" /note="putative RBS for STM1529; RegulonDB:STMS1H001739" CDS 1605540..1605866 /locus_tag="STM1529" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_447948.1" /db_xref="GeneID:1253047" /translation="MPSVISCLTVDVASFCAAVGVAADADDAIRVNVIAAAENNSDVF CIIVIPIWSVFETLYLSCYVHLYTKGAWLTNNKKHPSIKLPRKGSSAIKNIVFVCNGM TQNINI" gene 1606403..1607526 /locus_tag="STM1530" /db_xref="GeneID:1253048" regulatory 1606403..1606408 /regulatory_class="ribosome_binding_site" /locus_tag="STM1530" /note="putative RBS for STM1530; RegulonDB:STMS1H001740" CDS 1606408..1607526 /locus_tag="STM1530" /note="similar to E. coli putative outer membrane protein (AAC74459.1); Blastp hit to AAC74459.1 (377 aa), 61% identity in aa 2 - 377" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_460490.1" /db_xref="GeneID:1253048" /translation="MKKVVVLSAVAAAVMMAGAANAAEIYNKDGNKLDLYGKVDGLHY FSSNHSTDGDQSYIRMGIKGETQITDQLTGFGQWEYQVNANRPEDGDSSGSPQSWTRL GFAGLAFADMGSVDYGRNYGVLYDIGSWTDVLPEFGNDSYEASDNFMTGRANGVLTYR NNDFFGLVDGLNIALQYQGKNDGLSKEGDPLSNNARKSIAYQNGDGFGASATYDLGMG VSLGAAYTSSKRTLDQMTQDKYDNGDRAEAWTGGVKYDANNIYLAANYTRTYDMTYMG DTLGGFAHKTDNWEMVGQYQFDNGLRPSLAFLQSRANDVDGLGSFDLVKYIDVGSYYY FNKNMSAYVDYKINLLKDGNPSNPNTDNTVALGLVYEF" misc_feature 1606477..1607523 /locus_tag="STM1530" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" misc_feature order(1606498..1606500,1606504..1606506,1606522..1606524, 1606528..1606536,1606597..1606611,1606627..1606629, 1606633..1606641,1606645..1606647,1606651..1606662, 1606705..1606710,1606714..1606728,1606756..1606764, 1606861..1606863,1606867..1606872,1607410..1607415, 1607422..1607424,1607509..1607511,1607515..1607517, 1607521..1607523) /locus_tag="STM1530" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238208" misc_feature order(1606519..1606521,1606582..1606584,1606708..1606710, 1606801..1606803,1606861..1606863) /locus_tag="STM1530" /note="eyelet of channel [active]" /db_xref="CDD:238208" gene complement(1607667..1608015) /locus_tag="STM1531" /db_xref="GeneID:1253049" CDS complement(1607667..1608008) /locus_tag="STM1531" /note="similar to E. coli may modulate levels of hydrogenease-2 (AAC76027.1); Blastp hit to AAC76027.1 (113 aa), 38% identity in aa 1 - 113" /codon_start=1 /transl_table=11 /product="putative hydrogenase" /protein_id="NP_460491.1" /db_xref="GeneID:1253049" /translation="MHELALAQNIIELLEEQAVNHQFSKVKQVWLEIGVMACVEVPAL HFGLDVAARHTLADNARFHITIAPAQGWCLSCNQPFTSQTSTLCCPLCHSGKVQIDDS SRMRIREIEVE" misc_feature complement(1607670..1608008) /locus_tag="STM1531" /note="Hydrogenase maturation factor HypA/HybF, metallochaperone involved in Ni insertion [Posttranslational modification, protein turnover, chaperones]; Region: HybF; COG0375" /db_xref="CDD:440144" regulatory complement(1608010..1608015) /regulatory_class="ribosome_binding_site" /locus_tag="STM1531" /note="putative RBS for STM1531; RegulonDB:STMS1H001741" gene complement(1608021..1608914) /locus_tag="STM1532" /db_xref="GeneID:1253050" CDS complement(1608021..1608908) /locus_tag="STM1532" /codon_start=1 /transl_table=11 /product="putative dehydrogenase protein" /protein_id="NP_460492.1" /db_xref="GeneID:1253050" /translation="MQRLTVYSHPLRIIWQEAPIGRLLQGATPVYAKTLISRLFTLCA QAHSAAAALLLFPEKKPDMQAAQQELARETLRRALTDWLPLFSHRQATAEEWALLRRG ELSPLASTIFFDDDPQTWLAAGVKGWEAWFLQERSETARWLAAVQNIITPTLPMASSP DHTLITHGPLDVSPLAIEYPLLSACCLSGKTTALRLLARCITLARSLSALPTLRWNRF DDGEWKIAVVETARGWLVHQARLTTSGNILDYRIISPTTRHAQPDGVIARELATIPLS LWSQQLQVIDPCVAVNIVE" gene complement(1608896..1609963) /locus_tag="STM1533" /db_xref="GeneID:1253051" CDS complement(1608896..1609957) /locus_tag="STM1533" /note="similar to E. coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); Blastp hit to AAC74062.1 (285 aa), 32% identity in aa 7 - 281" /codon_start=1 /transl_table=11 /product="putative hydrogenase" /protein_id="NP_460493.1" /db_xref="GeneID:1253051" /translation="MNHSRTIPVVNIAGPGSQPEEEDFNFLPIPAGINLPLTPVLPEQ ALPAELRVARHILTTLIRDMDNPVATLPFPLSYKLNATEQQNSGLLDQLLGEGEISAR VLLSDGKEQRIQETVFTGVWRVREYNADQQRVADEIIIGPIPESIWQTHPQPPITPEL PPQPAGLMNGAFIAHEIAERVKQPVKEPHIINLTLLPVNDADREYLDHFLGEGCSAIF SRGYGKCRIVSTHFPGVWRVNYFNDMNTLLQDMIEIADIPDIAVAGIDDIEDAYAGLK NTLEWLKEYPVTENEPVVRMECKVCWWVYDPALGDDVWQIPPGVPFNQLPDYWCCPVC ETSKSGFMVIDEGNSSCKD" misc_feature complement(1609523..>1609693) /locus_tag="STM1533" /note="HupH hydrogenase expression protein, C-terminal conserved region; Region: HupH_C; pfam04809" /db_xref="CDD:428133" misc_feature complement(1609133..1609453) /locus_tag="STM1533" /note="HupH hydrogenase expression protein, C-terminal conserved region; Region: HupH_C; pfam04809" /db_xref="CDD:428133" misc_feature complement(1608923..1609075) /locus_tag="STM1533" /note="Flavorubredoxin [Inorganic ion transport and metabolism]; Region: NorV; COG1773" /db_xref="CDD:441379" regulatory complement(1608909..1608914) /regulatory_class="ribosome_binding_site" /locus_tag="STM1532" /note="putative RBS for STM1532; RegulonDB:STMS1H001742" regulatory complement(1609958..1609963) /regulatory_class="ribosome_binding_site" /locus_tag="STM1533" /note="putative RBS for STM1533; RegulonDB:STMS1H001743" gene complement(1609975..1610392) /locus_tag="STM1534" /db_xref="GeneID:1253052" CDS complement(1609975..1610385) /locus_tag="STM1534" /note="similar to E. coli processing of HyaA and HyaB proteins (AAC74061.1); Blastp hit to AAC74061.1 (132 aa), 36% identity in aa 17 - 115" /codon_start=1 /transl_table=11 /product="putative hydrogenase" /protein_id="NP_460494.1" /db_xref="GeneID:1253052" /translation="MTISPQNPVCPLADKGFLVTDAQTLPSLINAHPTLLVLLQSDPN KHPEVADSWVIIPEILKQFPATSYTAAFADSEQSELIAREYRILKYPALLFFRQHRFV GSLAGLYSWQEYSQRVAALLTTPGYRQDIPVITQ" misc_feature complement(1610044..1610352) /locus_tag="STM1534" /note="Hydrogenase-1 expression protein HyaE; Region: HyaE; pfam07449" /db_xref="CDD:400018" gene complement(1610382..1610685) /locus_tag="STM1535" /db_xref="GeneID:1253053" CDS complement(1610382..1610681) /locus_tag="STM1535" /codon_start=1 /transl_table=11 /product="putative hydrogenase protein" /protein_id="NP_460495.1" /db_xref="GeneID:1253053" /translation="MCIGVPVQVISPGQWFAKCRDRHGELIDVDIRLVAPPLAGAWLL TFGGAARREMDEAEAAEVLAALDSLEQAMLTQSDPLTGFADLLSRTPELPEHLKK" misc_feature complement(<1610517..1610681) /locus_tag="STM1535" /note="HypC/HybG/HupF family hydrogenase formation chaperone; Region: PRK10409; cl00394" /db_xref="CDD:469758" regulatory complement(1610387..1610392) /regulatory_class="ribosome_binding_site" /locus_tag="STM1535" /note="putative RBS for STM1534; RegulonDB:STMS1H001744" regulatory complement(1610680..1610685) /regulatory_class="ribosome_binding_site" /locus_tag="STM1535" /note="putative RBS for STM1535; RegulonDB:STMS1H001745" gene complement(1610681..1611296) /locus_tag="STM1536" /db_xref="GeneID:1253054" CDS complement(1610681..1611289) /locus_tag="STM1536" /note="similar to E. coli processing of HyaA and HyaB proteins (AAC74060.1); Blastp hit to AAC74060.1 (195 aa), 53% identity in aa 6 - 183" /codon_start=1 /transl_table=11 /product="putative hydrogenase maturation protease" /protein_id="NP_460496.1" /db_xref="GeneID:1253054" /translation="MAEVTILGLGNLLWADEGFGVRAAEKLFEQYADNEKVDVVDGGT QGLALLPWLQQTEKLLIMDAIDFGMAPGSLAMFRDEQVPAYLTAKKLSLHQTSFSEVL ALLQLTGGQLSEIVLIGVQPECLDDYGGSLTPQVKAQLMPAVYLAQEVLAQWGITASS AALPTERLNHYSLCMERYEDERPDAQSACRVGDIRVLQREKS" misc_feature complement(1610744..1611280) /locus_tag="STM1536" /note="Hydrogenase specific C-terminal endopeptidases, also called Hydrogen Maturation Proteases (H2MP). These enzymes belong to the peptidase family M52. Maturation of [FeNi] hydrogenases includes formation of the nickel metallocenter, proteolytic processing...; Region: H2MP; cl00477" /db_xref="CDD:444928" misc_feature complement(order(1611161..1611169,1611215..1611217, 1611257..1611259)) /locus_tag="STM1536" /note="putative substrate-binding site [active]" /db_xref="CDD:99873" misc_feature complement(order(1611008..1611010,1611101..1611103, 1611239..1611241)) /locus_tag="STM1536" /note="nickel binding site [ion binding]; other site" /db_xref="CDD:99873" regulatory complement(1611291..1611296) /regulatory_class="ribosome_binding_site" /locus_tag="STM1536" /note="putative RBS for STM1536; RegulonDB:STMS1H001746" gene complement(1611295..1612042) /locus_tag="STM1537" /db_xref="GeneID:1253055" CDS complement(1611295..1612038) /locus_tag="STM1537" /note="similar to E. coli probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit (AAC74059.1); Blastp hit to AAC74059.1 (235 aa), 54% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="putative Ni/Fe-hydrogenase 1 b-type cytochrome subunit" /protein_id="NP_460497.1" /db_xref="GeneID:1253055" /translation="MLLIIMEGSWSGFRYDDDDSEVSMHLKEITSQGYYIYEAPVRLW HWITALSIVVLAVTGYFIGRPLPSIQGEATFMFWMGWIRLIHFTTAYIFTVALLFRIY WACVGNEYAREMFLVPFWRRAWRKGVISEIRWYFFLEKEAHRYYGHNPVAGLAVMFYF WMSVLMVCSGFALYGEGLGTDSWAYQWFGWMIRLTGNDSLALHFWHRLGMWFIIAFVI AHVYTAIREDIMSRQSVISVMISGWRWFR" misc_feature complement(1611298..1611969) /locus_tag="STM1537" /note="Ni,Fe-hydrogenase I cytochrome b subunit [Energy production and conversion]; Region: HyaC; COG1969" /db_xref="CDD:441572" gene complement(1611989..1613797) /locus_tag="STM1538" /db_xref="GeneID:1253056" CDS complement(1611989..1613791) /locus_tag="STM1538" /EC_number="1.12.7.2" /note="similar to E. coli hydrogenase-1 large subunit (AAC74058.1); Blastp hit to AAC74058.1 (597 aa), 66% identity in aa 1 - 597" /codon_start=1 /transl_table=11 /product="putative hydrogenase-1 large subunit" /protein_id="NP_460498.1" /db_xref="GeneID:1253056" /translation="MAYPYQTQGFTLDNSGRRIVVDPVTRIEGHMRCEVNIDSNNVIT NAVSTGTMWRGLEVILKGRDPRDAWAFVERICGVCTGTHALTSIRAVENALGIAIPDN ANCIRNMMQATLHVHDHLVHFYHLHALDWVDVVAALKADPHQTSAIAQSLSAWPLSSP GYFRDLQNRLKRFIESGQLGPFRNGYWGHPAMKLPPEANLLAVAHYLEALDFQKEIVK IHTVFGGKNPHPNWLVGGVPCAINLDETGAVGAVNMERLNLVSSIIQKARQFCEQVYL PDVLLIASYYKDWAKIGGGLSSMNLLAYGEFPDNPNDYSASNLLLPRGAIINGRFDEI HPVDLTAPDEIQEFVTHSWYTYGNGNNDKGLHPWDGLTEPQLVMGEHYKGTKTFIEQV DESAKYSWIKSPRWKGHAMEVGPLARYLIGYHQNKPEFKEPVDQLLSVLKLPKEALFS TLGRTAARALESVWAGNTLQYFFDRLMRNLKSGDTATANVTLWEPDTWPTSAKGVGFS EAPRGALGHWIKIANQKIDSYQCVVPTTWNAGPRDDKGQIGAYEAALMGTKLAVPDQP LEILRTLHSFDPCLACSTHVIDNHGGELVRVQVR" misc_feature complement(1612037..1613632) /locus_tag="STM1538" /note="Nickel-dependent hydrogenase; Region: NiFeSe_Hases; pfam00374" /db_xref="CDD:459789" regulatory complement(1612037..1612042) /regulatory_class="ribosome_binding_site" /locus_tag="STM1537" /note="putative RBS for STM1537; RegulonDB:STMS1H001747" regulatory complement(1613792..1613797) /regulatory_class="ribosome_binding_site" /locus_tag="STM1538" /note="putative RBS for STM1538; RegulonDB:STMS1H001748" gene complement(1613794..1614902) /locus_tag="STM1539" /db_xref="GeneID:1253057" CDS complement(1613794..1614897) /locus_tag="STM1539" /EC_number="1.12.7.2" /note="similar to E. coli hydrogenase-1 small subunit (AAC74057.1); Blastp hit to AAC74057.1 (372 aa), 72% identity in aa 1 - 371" /codon_start=1 /transl_table=11 /product="putative hydrogenase-1 small subunit" /protein_id="NP_460499.1" /db_xref="GeneID:1253057" /translation="MQTQDTFYQVMRRHGVTRRSFLKFCSLTATSLGLSSSMIPQIAY ALENKPRTPVIWLHGLECTCCTESFIRSAHPLAKDAILSLISLDYDDTIMAAAGQQAE QALADVMREYKGNYIVAVEGNAPLNEDGMFCILAGEPFLEKLKRVSADAKAIIAWGSC ASWGCVQAARPNPTKATPVHKLITDKPIIKVPGCPPIPEVMSAVITYMLAFDRIPPLD RLGRPKMFYGQRIHDKCYRRAHFDAGQFVEAWDDEGARKGYCLYKMGCKGPTTYNACS TVRWNDGVSFPIQSGHGCLGCSEDGFWDYGSFYSRATGIPQTGIEATADKIGLGVAGV AGAAAIAHATVSAIKHARNKNNTSSENAPEEKK" misc_feature complement(1613917..1614897) /locus_tag="STM1539" /note="Ni,Fe-hydrogenase I small subunit [Energy production and conversion]; Region: HyaA; COG1740" /db_xref="CDD:441346" regulatory complement(1614897..1614902) /regulatory_class="ribosome_binding_site" /locus_tag="STM1539" /note="putative RBS for STM1539; RegulonDB:STMS1H001749" gene 1615319..1616417 /locus_tag="STM1540" /db_xref="GeneID:1253058" regulatory 1615319..1615324 /regulatory_class="ribosome_binding_site" /locus_tag="STM1540" /note="putative RBS for STM1540; RegulonDB:STMS1H001750" CDS 1615326..1616417 /locus_tag="STM1540" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_460500.1" /db_xref="GeneID:1253058" /translation="MMKKSKAMLFIAPALFSYALAAQACTTLAIQDKQGDIFHGRTLE YMQDLPSWLTYYPAGTQFDKKTPDGSQGISYQAKYPILAITSTITDGDSRDILEGMNS AGLSFSENMIMNAQLPPLPASEYKQAIPVTSLGEWALARFATVGEVKQAIKEGKFWSP ELHRFGDLKSPFHYAFYDKKGGSIVVEVENGKFHVYDNPTRVMTNGPAFPWHLTNLNN YTQLTNVDRSSGTLGGIKVMQPDSGIAIADLPSSDTSVSRFIRGVYYTTYAPQATSAH DAMNTLAHIMSRFDRPKNITVDYMGSEGEGNATRKPVSEYTVWTTLSDLMHGEMMVRG YNDINYKTWSLSQFKNATAPVFEKINVKG" misc_feature 1615398..1616360 /locus_tag="STM1540" /note="Penicillin V acylase (PVA), also known as conjugated bile salt acid hydrolase (CBAH), catalyzes the hydrolysis of penicillin V to yield 6-amino penicillanic acid (6-APA), an important key intermediate of semisynthetic penicillins. PVA has an N-terminal...; Region: Ntn_PVA; cd00542" /db_xref="CDD:238303" misc_feature order(1615398..1615400,1615446..1615448,1615452..1615454, 1615470..1615472,1615593..1615595,1615614..1615616, 1615809..1615811,1615824..1615826,1615839..1615841) /locus_tag="STM1540" /note="active site" /db_xref="CDD:238303" gene 1616457..1617254 /locus_tag="STM1541" /db_xref="GeneID:1253059" regulatory 1616457..1616462 /regulatory_class="ribosome_binding_site" /locus_tag="STM1541" /note="putative RBS for STM1541; RegulonDB:STMS1H001751" CDS 1616463..1617254 /locus_tag="STM1541" /note="similar to E. coli regulator for uxu operon (AAC77280.1); Blastp hit to AAC77280.1 (257 aa), 31% identity in aa 8 - 229" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_460501.1" /db_xref="GeneID:1253059" /translation="METTGGCFSLSCTVINYHDHQRQDGMLNPFKIPWIWIGGRMVIP EVRQERLYQKIANLIIKLINDNIFPPGTFLPPERELAKQLGVSRASLREALIVLEISG WIVIQSGNGVIVSDKKHLASDYTIEEILSTRELVDSHCARLAAQNDNVDVINQIEAIY HRMDQAINDNNVHGFYSLDKEFHLAISEASRNRVLFDMSRMLWEQRINIPYAGLDEQS GDRNVLLNLNKQHKAIVDAMRQSDADSAYEGSLEHLRYVRKIVGG" misc_feature 1616598..1617245 /locus_tag="STM1541" /note="DNA-binding transcriptional regulator, FadR family [Transcription]; Region: FadR; COG2186" /db_xref="CDD:441789" gene complement(1617313..1618344) /locus_tag="STM1542" /db_xref="GeneID:1253060" CDS complement(1617313..1618338) /locus_tag="STM1542" /note="similar to E. coli starvation sensing protein (AAC74652.1); Blastp hit to AAC74652.1 (339 aa), 32% identity in aa 1 - 337" /codon_start=1 /transl_table=11 /product="putative zinc-binding dehydrogenase" /protein_id="NP_460502.1" /db_xref="GeneID:1253060" /translation="MKVKAVFINKPGEVETRWVDYPHKKENEVLIKVDAAGICGSDIG AFRGTNPLVTYPRIIGHEVTGIVLQEGAGMPDNIKEGDRVIVDPYIYCGHCYPCSVGR TNCCENLNVIGVHVDGAMQEVVTHPAHLIHKIPDNVPSEMAPLAEPLTIALHALHRAN VKAGEYVAIIGAGAIGLMAALSARHYKATPILIDIVEERLRYAQKLGVPYVLNAADDQ VIDAIKNITHGTMAQVVIEASGANSAIRNTLDLASFAGRISFTGWPKQETSLPTNLIT YKELDLRGSRTSAGEFDEALRMLSTLEINPQDVVSKVVNLDEIPDAVKELDRYPERYL KINAVFH" misc_feature complement(1617331..1618332) /locus_tag="STM1542" /note="Alcohol dehydrogenases of the MDR family; Region: Zn_ADH7; cd08261" /db_xref="CDD:176222" misc_feature complement(order(1617478..1617486,1617553..1617558, 1617616..1617618,1617622..1617627,1617697..1617699, 1617742..1617744,1617754..1617759,1617811..1617828, 1617886..1617888,1617898..1617900,1618207..1618209, 1618216..1618224)) /locus_tag="STM1542" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176222" misc_feature complement(order(1617898..1617900,1618153..1618158, 1618222..1618224)) /locus_tag="STM1542" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176222" misc_feature complement(order(1618021..1618023,1618045..1618047, 1618054..1618056,1618063..1618065)) /locus_tag="STM1542" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176222" gene complement(1618313..1619606) /locus_tag="STM1543" /db_xref="GeneID:1253061" CDS complement(1618313..1619599) /locus_tag="STM1543" /note="similar to E. coli putative transport protein (AAC76161.1); Blastp hit to AAC76161.1 (444 aa), 32% identity in aa 17 - 433, 23% identity in aa 108 - 270" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_460503.1" /db_xref="GeneID:1253061" /translation="MKRKTMGWLIVFLLFIVYMLNYMDRSALSITAPLIEKELGFNAA EMGMIFSAFFIGYALFNFIGGWASDKVGPKTVFLIAALLWSVFCGLTGLVTGLWTMLI VRVLFGMAEGPVSAAGNKIINNWISRKESATAIGIFSAGSPLGGAVSGPIVGLLALSL GWRPAFGIIFLFGLVWVLLWYFIVSDKPTMSKRLAPEERIDFENHEDVILSDDGRATP SLGYYMKQPMVWATTLAFFSYNYILFFFLTWFPSYLNHSLHLDIKEISIATVIPWVIG AIGMVLGGVCSDVIYRITGNALLSRRLILGVCLAGAAVCVAVSGTVSTIGSAITLMSV SLFLLYLTGPIYWAVIQDVVHKDKVGSVGGAMHGLANISGIIGPLVTGFIVQFSGKYD YAFYLAGAIAIVSSLLVFVFVKSKGFKANESQSCVH" misc_feature complement(1618367..1619578) /locus_tag="STM1543" /note="Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily; Region: MFS_ExuT_GudP_like; cd17319" /db_xref="CDD:340877" misc_feature complement(order(1618478..1618480,1618487..1618492, 1618499..1618504,1618511..1618513,1618559..1618561, 1618571..1618573,1618583..1618588,1618760..1618762, 1618772..1618774,1618856..1618858,1618865..1618873, 1618880..1618885,1618892..1618894,1619162..1619164, 1619171..1619176,1619183..1619185,1619243..1619245, 1619252..1619260,1619264..1619269,1619417..1619419, 1619513..1619515,1619522..1619527,1619534..1619539)) /locus_tag="STM1543" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340877" regulatory complement(1618339..1618344) /regulatory_class="ribosome_binding_site" /locus_tag="STM1542" /note="putative RBS for STM1542; RegulonDB:STMS1H001752" regulatory complement(1619601..1619606) /regulatory_class="ribosome_binding_site" /locus_tag="STM1543" /note="putative RBS for STM1543; RegulonDB:STMS1H001753" gene complement(1619776..1621332) /gene="pqaA" /locus_tag="STM1544" /db_xref="GeneID:1253062" CDS complement(1619776..1621332) /gene="pqaA" /locus_tag="STM1544" /codon_start=1 /transl_table=11 /product="PhoPQ-regulated protein" /protein_id="NP_460504.1" /db_xref="GeneID:1253062" /translation="MFKRYLWKLCWLAFALVKRGESMKKIYLVVIVLFFISTKVYTLL HNNIFFCRNSPECDLSHVLPDYREQISGTPLKYTLINTAPLAQVVVRHYELLSQHWSP DDMVTPAQWRHNVDIYIPETAKEHHALVVVNNGINYDKGVQITGKPGDFPQETLASIS RDTNTIVISVSDIPNQYLTFQDDKKPLKEDESVSRSWALFMEAPEQRKLMPLNIPMVT AISQAMRLAKKELTQWNINSFIITGISKRGWTTWLSAIADPDVEAIVPFAIDLLDIDA SLEHIYQSYGGNWPITFYPYYQQGIDEKIKSPAFTQLRQIIDPLRYLNTIYQPRLAIP KYIINASGDDFFVPDNTRFYYSKLPGVKSLRIVPNMNHYSINQFAEGSLVPFINRFQS KKTLPQLIDLIHHHLLTVYFSEAPVKVVRWTANNPNARDFRYACGIRYQPLTIDSPVN NKISITLNEPKTGWEATYIEATFNDGYVATSQVYITPDEKYPQTAPPSVNAACQTLPG RGLGENDSSD" misc_feature complement(1619854..1621176) /gene="pqaA" /locus_tag="STM1544" /note="PhoPQ-activated pathogenicity-related protein [General function prediction only]; Region: PqaA; COG4287" /db_xref="CDD:443428" gene complement(1621402..1622648) /locus_tag="STM1545" /db_xref="GeneID:1253063" CDS complement(1621402..1622643) /locus_tag="STM1545" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC73932.1); Blastp hit to AAC73932.1 (402 aa), 23% identity in aa 26 - 394" /codon_start=1 /transl_table=11 /product="putative multidrug efflux protein" /protein_id="NP_460505.1" /db_xref="GeneID:1253063" /translation="MNTNVYENTDSETITPLNKRRILPVFLLVGLYAASTAAVMSVLP FYIREMGGSPLIIGIIIATEAFSQFCAAPLIGHLSDRVGRKRILIVTLAIAAISLLLL ANAQCILFILLARTLFGISAGNLSAAAAYIADCTHVRNRRQAIGILTGCIGLGGIVGA GVSGWLSRISLSAPIYAAFILVLGSALVAIWGLKDPSTTSRTTDKIAAFSARAILKMP VLRVLIIVMLCHFFAYGMYSSQLPVFLSDTFIWNGLPFGPKALSYLLMADGVINIFVQ LFLLGWVSQYFSERKLIILIFALLCTGFLTAGIATTIPVLVFAIVCISIADALAKPTY LAALSVHVSPARQGIVIGTAQALIAIADFISPVLGGFVLGYALYGVWIGIAISVAIIG LVTAMIYLSKSSVLIVKPETE" misc_feature complement(1621450..1622571) /locus_tag="STM1545" /note="Eukaryotic Solute carrier 46 (SLC46) family, Bacterial Tetracycline resistance proteins, and similar proteins of the Major Facilitator Superfamily of transporters; Region: MFS_SLC46_TetA_like; cd17330" /db_xref="CDD:340888" misc_feature complement(order(1621558..1621560,1621567..1621572, 1621579..1621584,1621591..1621593,1621639..1621641, 1621651..1621653,1621663..1621668,1621816..1621818, 1621828..1621830,1621927..1621929,1621936..1621944, 1621951..1621956,1621963..1621965,1622176..1622178, 1622185..1622190,1622197..1622199,1622254..1622256, 1622263..1622271,1622275..1622280,1622428..1622430, 1622524..1622526,1622533..1622538,1622545..1622550)) /locus_tag="STM1545" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340888" gene complement(1622633..1624152) /locus_tag="STM1546" /db_xref="GeneID:1253064" CDS complement(1622633..1624141) /locus_tag="STM1546" /note="similar to E. coli 3-(3-hydroxyphenyl)propionate hydroxylase (AAC73450.1); Blastp hit to AAC73450.1 (554 aa), 29% identity in aa 15 - 353, 35% identity in aa 494 - 521" /codon_start=1 /transl_table=11 /product="putative monooxygenase" /protein_id="NP_460506.1" /db_xref="GeneID:1253064" /translation="MTRYTTTDVLICGAGVTGLTLAIELARHGVSFRLIEKRTTPFIG SRGKGIQPRTQEIFEDLGILNKVVAAGGLYPRLRTYRHDGSYVDSDIAHHTKPTHAEP YHLPLMVPQNVTETIMREQLKAWGHRVEFGCELRHFAQTPRTVTAYVAGPAGEEVIIA HYLIGADGGGSFVRKKLGVSFPGRTLGIHALVADASLSGLNRDVWHHFNDGDMARMIT ICPLAGTQLFQIQALLAPDDSQNFSADVLTAFLTERIGRTDVRIHSIPWVSKYQMNAR IAEHYRVGKVFLAGDAAHVHPPTGGQGLNTSIQDAYNLGWKMAASLRGAGEELLDSYE QERRPIAESLLHLSTRLLDSQKQRGIKRERDVQQLDIQYTNSPLAHTLPERQHGLQAG ERAPDAPLLGAGGQSLRLFQLLQGPDWNLLAYETHGKVIDARRGLRIHHIGEQDELID TLGHFRESYHLAPGQCVLIRPDGYVGAFFHGKQSNDIENYLSRFAIGIKDEY" misc_feature complement(1622636..1624132) /locus_tag="STM1546" /note="hypothetical protein; Provisional; Region: PRK06184" /db_xref="CDD:235728" regulatory complement(1622643..1622648) /regulatory_class="ribosome_binding_site" /locus_tag="STM1545" /note="putative RBS for STM1545; RegulonDB:STMS1H001754" regulatory complement(1624147..1624152) /regulatory_class="ribosome_binding_site" /locus_tag="STM1546" /note="putative RBS for STM1546; RegulonDB:STMS1H001755" gene 1624178..1624674 /locus_tag="STM1547" /db_xref="GeneID:1253065" regulatory 1624178..1624183 /regulatory_class="ribosome_binding_site" /locus_tag="STM1547" /note="putative RBS for STM1547; RegulonDB:STMS1H001756" CDS 1624186..1624674 /locus_tag="STM1547" /codon_start=1 /transl_table=11 /product="putative marR-family transcriptional regulator" /protein_id="NP_460507.1" /db_xref="GeneID:1253065" /translation="MSENKNVQDTHISEQMKALHGALIRVVSALNRPRNDEKLIAEAG IQLDRALFSILISIERLGPIGVVELAERAGRDYTTVSRQVAKLEKLGLIIRQHNAIDR RIREAVISRTGKAMTERIDAAREQMGNVVFKDWPQDELDVFVRLMQKFADAMDSDASM PE" misc_feature 1624186..1624644 /locus_tag="STM1547" /note="DNA-binding transcriptional regulator, MarR family [Transcription]; Region: MarR; COG1846" /db_xref="CDD:441451" gene 1624906..1625946 /locus_tag="STM1548" /db_xref="GeneID:1253066" CDS 1624906..1625946 /locus_tag="STM1548" /note="similar to E. coli synthesis of queuine in tRNA; probably S-adenosylmethionine:tRNA ribosyltransferase-isomerase (AAC73508.1); Blastp hit to AAC73508.1 (356 aa), 28% identity in aa 23 - 343" /codon_start=1 /transl_table=11 /product="putative S-adenosylmethionine:tRNA-ribosyltransferase-isomerase" /protein_id="NP_460508.3" /db_xref="GeneID:1253066" /translation="MTIPLRPHWIANDSYREKCKMLVLNRSKGEIHKVDFSKLTDYIK EGDVICFNDSTIINHMFICKTRQNRLIKIVLEGFLPNNRVIISGLLKERLNANDVFYL VDNPEISIKIEQRFSEESQYRAVVENHEALICYLASHGERLDEYVDSSLFYKYPDAYR SVFSKKYGSLEIPSAGIHFTWDLIQRIKDKGGLISFITLHVASTEMLSNRKIQTKCVE EVTINEEYYEVPQATADIINTAKQNGGRIFAVGTTVTRCLESAYSREHNCLKASSGWT ALYIHPGYQLKVVDCLLTNLHQPKTTHMVLTGQFAGVDLLIKAYTSEHIQSCQFDMFG DCMLIIQDEGQG" misc_feature 1624951..1625922 /locus_tag="STM1548" /note="Queuosine biosynthesis protein; Region: Queuosine_synth; pfam02547" /db_xref="CDD:460587" gene complement(1625998..1626399) /locus_tag="STM1549" /db_xref="GeneID:1253067" CDS complement(1625998..1626387) /locus_tag="STM1549" /note="similar to E. coli orf, hypothetical protein (AAC77205.1); Blastp hit to AAC77205.1 (131 aa), 82% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="putative translation initiation inhibitor" /protein_id="NP_460509.1" /db_xref="GeneID:1253067" /translation="MTQRIAVFPADRHSLYEEHGYSAAIRSGDLLFVSGQVGSHTDGT PEPDFQKQVRLAFENLKATLTAAGCTFDDIVDVTTFHTDPEQQLNDVMAVKQEIFAHP PYPNWTAVGVTWLAGFDFEIKVIARIP" misc_feature complement(1626004..1626333) /locus_tag="STM1549" /note="YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgH_like; cd02198" /db_xref="CDD:100005" misc_feature complement(order(1626013..1626015,1626019..1626021, 1626025..1626027,1626052..1626078,1626091..1626093, 1626103..1626105,1626112..1626114,1626148..1626150, 1626154..1626156,1626160..1626165,1626169..1626171, 1626283..1626288,1626292..1626294,1626298..1626300, 1626307..1626309,1626313..1626315,1626322..1626327)) /locus_tag="STM1549" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100005" misc_feature complement(order(1626025..1626027,1626067..1626069, 1626112..1626114,1626124..1626126,1626325..1626327)) /locus_tag="STM1549" /note="putative active site [active]" /db_xref="CDD:100005" regulatory complement(1626394..1626399) /regulatory_class="ribosome_binding_site" /locus_tag="STM1549" /note="putative RBS for STM1549; RegulonDB:STMS1H001757" gene complement(1626558..1626848) /locus_tag="STM1550" /db_xref="GeneID:1253068" CDS complement(1626558..1626842) /locus_tag="STM1550" /note="similar to E. coli orf, hypothetical protein (AAC74636.1); Blastp hit to AAC74636.1 (95 aa), 62% identity in aa 1 - 87" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460510.1" /db_xref="GeneID:1253068" /translation="MTYKLAFNESALKEWKKLGHTIQEQFKKKLRERLENPRVPASQL HGRKDQYKIKLRGAGYRLVYSVEDEIITVTVIGVGKRENDAVYKMTRHRS" misc_feature complement(1626579..1626839) /locus_tag="STM1550" /note="mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system [Defense mechanisms]; Region: RelE; COG2026" /db_xref="CDD:441629" gene complement(1626832..1627088) /locus_tag="STM1551" /db_xref="GeneID:1253069" CDS complement(1626832..1627080) /locus_tag="STM1551" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460511.1" /db_xref="GeneID:1253069" /translation="MAFQILTTTAASITELKRDPMGTFNAGDGAPVAILNRNEPAFYC VPPALYAHLMDILEDEELGRIIDERANERVIEVNIDDL" misc_feature complement(1626835..1627056) /locus_tag="STM1551" /note="Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family [Defense mechanisms]; Region: StbD; COG2161" /db_xref="CDD:441764" regulatory complement(1626843..1626848) /regulatory_class="ribosome_binding_site" /locus_tag="STM1551" /note="putative RBS for STM1550; RegulonDB:STMS1H001758" regulatory complement(1627083..1627088) /regulatory_class="ribosome_binding_site" /locus_tag="STM1551" /note="putative RBS for STM1551; RegulonDB:STMS1H001759" gene 1627912..1628820 /locus_tag="STM1552" /db_xref="GeneID:1253070" CDS 1627912..1628820 /locus_tag="STM1552" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460512.1" /db_xref="GeneID:1253070" /translation="MNHVKKHVLWKDEYFERYYRLNPELVQKRLDKIYQAEDDLMVLI STQLFCFLQANGTLYFDGCYKTGKADNSLLCTNLALWSIELACDHFDIREERGHTTKF SEQGESWLTLFACNQFSLVPYCYPAIQRGFQSGVLKEIVPFYREQKLGILAMEIMARE RGDTINWEAMQVRVDPVYLDFCQNILLSSDDELVRTGLITLCDKHLEWTDFHNSDKHC CLTGYEIQRQDLLLWPFEYQAVKNWRARQGLSTPMIEHPLMNSPMTTANCPDFSQWQR PEWFNPLVDFLAQRRPELAFLRHLFI" gene complement(1628813..1629590) /locus_tag="STM1553" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1253071" gene complement(1630398..1631871) /locus_tag="STM1554" /db_xref="GeneID:1253072" CDS complement(1630398..1631864) /locus_tag="STM1554" /codon_start=1 /transl_table=11 /product="putative coiled-coil protein" /protein_id="NP_460513.1" /db_xref="GeneID:1253072" /translation="MMSSITKSIQNEYVLLMENAFSEKYKYAFRNLELKELRRFILKE LISSPELDNQLTNLIVLLNKFWDTHAAALITEVRASKSYRLLLPIQRFGYNISNHLRS LGIYFDSIIMVDPLHFPSLSSLHSFLSLPPDNSYVRMRRLVLLEHVSNLFRAIPFMTI DDDYPIFLIVPELLDFDKERNHEQSAAFLSQLFFKDRKMDYATYLAFLEHFGRNEETF QKILTNKELLKTLLNNFNNIEKEVWVYDTDLKSFTTREVDLLDYDLPSAIATLLGKVE GAIYAQRSTQLSATLLGIDPVIYSNHMFLHEWTTEQLVKDYGKLNPLSSEEQAITMGL SAAEVKFLTALSDLELKKIRERGQLESLRHELRISRHDLQGKTPDQMQDAANNFSKHL INVVEEYGKSHESAIKNSKKKKISSGLIFAGTATLGIASLAMPQLTLLSAAATGIGLA FGGKSLADIFSEHKAHKNEIQILEKTPVSLLYGAYKKK" regulatory complement(1631866..1631871) /regulatory_class="ribosome_binding_site" /locus_tag="STM1554" /note="putative RBS for STM1554; RegulonDB:STMS1H001760" gene 1632123..1633130 /locus_tag="STM1555" /db_xref="GeneID:1253073" CDS 1632123..1633130 /locus_tag="STM1555" /note="similar to E. coli repressor of galETK operon (AAC75876.1); Blastp hit to AAC75876.1 (343 aa), 42% identity in aa 1 - 330" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_460514.1" /db_xref="GeneID:1253073" /translation="MATIKDVASMAGVSTATVSRVINQTAWVEPVTRERVEKAMRDLN YRRNAAAIALAKRSGDMLGLLTGNLADPFFARLARGVEDVSRKQQYRLMVCSGGHDEE MEKAGLDFLVNQGCEAIVVHASRLPDKELLRYAAHFPALVVVNRYIAGMANRCIWLEN RSAAREATRYLLANGHRRIACVTSDLPIIDRQERLDGYREALEEYGISPDPRWVISVP FNEEGGERAAHQLINSGLPLTAAVTFNDVMAAGIMRILHQRGVQLPQQLSIVGFDDVV LARYLYPALTTMHYPVEQMARCAAQLAIQLYQGITPPPSSNHFNAELVIRDSVAPYFS R" misc_feature 1632126..1632335 /locus_tag="STM1555" /note="helix_turn _helix lactose operon repressor; Region: HTH_LACI; smart00354" /db_xref="CDD:197675" misc_feature order(1632135..1632137,1632159..1632173,1632177..1632182, 1632189..1632191,1632204..1632209,1632216..1632218, 1632255..1632257,1632264..1632266,1632273..1632278, 1632282..1632287) /locus_tag="STM1555" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature 1632255..1632284 /locus_tag="STM1555" /note="domain linker motif [active]" /db_xref="CDD:143331" misc_feature 1632303..1633103 /locus_tag="STM1555" /note="ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism; Region: PBP1_GalS-like; cd06270" /db_xref="CDD:380494" misc_feature order(1632303..1632305,1632324..1632326,1632342..1632344, 1632357..1632359,1632366..1632368,1632393..1632404, 1632408..1632410,1632450..1632452,1632462..1632464, 1632783..1632788,1632882..1632884,1632960..1632965) /locus_tag="STM1555" /note="dimer interface (closed form) [polypeptide binding]; other site" /db_xref="CDD:380494" misc_feature order(1632339..1632341,1632486..1632488,1632702..1632704, 1632777..1632779,1632855..1632857,1632939..1632941) /locus_tag="STM1555" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380494" gene 1633267..1634725 /locus_tag="STM1556" /db_xref="GeneID:1253074" regulatory 1633267..1633272 /regulatory_class="ribosome_binding_site" /locus_tag="STM1556" /note="putative RBS for STM1556; RegulonDB:STMS1H001761" CDS 1633274..1634725 /locus_tag="STM1556" /note="similar to E. coli transport of dicarboxylates (AAC73722.1); Blastp hit to AAC73722.1 (461 aa), 23% identity in aa 36 - 414" /codon_start=1 /transl_table=11 /product="putative Na+/H+ antiporter" /protein_id="NP_460515.1" /db_xref="GeneID:1253074" /translation="MSASQNKKKTLSLGLALIPVISMLLLLIIGYGIMGLRIEPLLLC SAAVAAGIAWWQGYCWEDIINSVVDKLAKAMPVIMILICVGGLIGSWMFSGTIPYMVY WGLKLISPEYILIAAFFLTSVVSVCTGTSWGSAGTVGVALMGVAAGLDVSLAAAAGAV VSGAYFGDKISPLSDSTNFAAIVADTTLFEHIQHLLWTTLPSFLLAAVVYLIAGHSNM LGEVATPQRVTDIIHSLESLYHFNIVLILPPVIVLWGAIRKKPVIPLMLSACVLALFL GVIMQGLSIKQGLDAFIDGFDIAMFPQGAEGVVADVPRLLNRGGMFSMMGTILLVFCA FSFAGALTLTGALTIIINRLLTIIHSVGQLIAATIGTTILVTGATSDGKLALLVPAEL FKDAYRRMGLDTKNLSRTIEDAGTVIEPLLPWTSAGVYMATTLGVSTLDLLPWAIQCY AAIFFALIYGFSGIGIARTASASEKSPQSSVTE" misc_feature 1633307..1634680 /locus_tag="STM1556" /note="Na+/H+ antiporter NhaC; Region: antiport_nhaC; TIGR00931" /db_xref="CDD:188097" gene 1634727..1635940 /locus_tag="STM1557" /db_xref="GeneID:1253075" regulatory 1634727..1634732 /regulatory_class="ribosome_binding_site" /locus_tag="STM1557" /note="putative RBS for STM1557; RegulonDB:STMS1H001762" CDS 1634738..1635940 /locus_tag="STM1557" /EC_number="2.6.1.-" /note="similar to E. coli enzyme that may degrade or block biosynthesis of endogenous mal inducer, probably aminotrasferase (AAC74694.1); Blastp hit to AAC74694.1 (390 aa), 33% identity in aa 3 - 382" /codon_start=1 /transl_table=11 /product="putative aminotransferase" /protein_id="NP_460516.1" /db_xref="GeneID:1253075" /translation="MDFNQIINRNNTGSVKWDFIERHFGDGAGKLLPMWVSDFDFACP PEVQAALHQRIEHGVFGYSERDEAYFNALLHWFSSRHQLTLKQEWVCSVEGVVPGLAL LVQMLTHPGDGVVVQGPYYGSFAKIITLNGRKLLENPLSESPDDGYQMDFCQLERLFR HERPPLMILCNPHNPTGRCWSANELEQLLLLCEAYDVTLISDEIWADLLLPGETFTSV LHLGVRWHKRVISATAASKTFGLSSLRISNFLIPDPTLRQRFLSRLDAHGLDVFNALS VQAATTAWNESRQWLDSLLDYLAENRRWFVEHATEHLPWARIVPAQGTYLLWMDCKKL GLDDEQLKWVMADVAGIAPSMGSGFGPAGSGFIRLNLGCPRTYLEMAIDGLKRISVKT IKGIPTGG" misc_feature 1634738..1635898 /locus_tag="STM1557" /note="Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism, General function prediction only]; Region: MalY; COG1168" /db_xref="CDD:440782" gene complement(1636053..1638135) /locus_tag="STM1558" /db_xref="GeneID:1253076" CDS complement(1636053..1638128) /locus_tag="STM1558" /EC_number="3.2.1.-" /note="similar to E. coli part of glycogen operon, a glycosyl hydrolase, debranching enzyme (AAC76456.1); Blastp hit to AAC76456.1 (657 aa), 48% identity in aa 3 - 595" /codon_start=1 /transl_table=11 /product="putative glycosyl hydrolase" /protein_id="NP_460517.1" /db_xref="GeneID:1253076" /translation="MTTNRAFEIRSGYSHTLGANYDGEGVNFAIFSAHAERVELCLYD PSGEHEIARLELPEYTDEIWHGYVPKLQPGALYGYRVYGPYDPENGHRFNPNKLLIDP YARELVGDIQWNDAHFAYQLLHDDKDLTFDDQDSAPFTPKCRVIDPDEANWEDRQRPS IPWSNAIIYETHVKGFTQLNSAIPEPLRGTFEGMGHKASVDYIKSLGITSVELLPVHW FPDDQHLLDKGLKNFWGYNSLGFFAPATRYYGPKGIQGFRDMVRAFHDAGIEVILDVV YNHTAEGNELGPTLSFKGIDNFSYYRTMPDQHRYYINDTGTGNTVNTSHPRVLQMVMD SLRYWAESMHVDGFRFDLGTILGREPEGFDQRGGFFDAVTQDPVLAKLKLIGEPWDIG PGGYQVGGFPPGWGEWNDKYRDTVREYWKGDNVTNDFAARLLGSGDLYDLRGRRPWSS VNFITAHDGFTLNDLVSYNDKHNEANGEDNNDGHNDNRSCNYGAEGPTDDEGINAIRE RQKRNFLTTLLFSHGTPMLLAGDEFGRSQMGNNNGYCQDSEISWVHWDNLPETANALR EFTRHLIQLRATQPLLRRESWRDGLEIRWFNAGGGAQQSEQWDEGSTIGVCISRPDLQ PEAGIWHDALLLFNPFEGSVPFRIPMWGEGGWVLELTTADNAQQGMRITEEMDFDLAG RSIVLFRRP" misc_feature complement(1636059..1638098) /locus_tag="STM1558" /note="glycogen debranching enzyme GlgX; Region: glgX_debranch; TIGR02100" /db_xref="CDD:131155" regulatory complement(1638130..1638135) /regulatory_class="ribosome_binding_site" /locus_tag="STM1558" /note="putative RBS for STM1558; RegulonDB:STMS1H001763" gene complement(1638185..1640719) /locus_tag="STM1559" /db_xref="GeneID:1253077" CDS complement(1638185..1640713) /locus_tag="STM1559" /note="similar to E. coli trehalase 6-P hydrolase (AAC77196.1); Blastp hit to AAC77196.1 (551 aa), 36% identity in aa 41 - 129, 25% identity in aa 149 - 210, 37% identity in aa 356 - 379" /codon_start=1 /transl_table=11 /product="putative glycosyl hydrolase" /protein_id="NP_460518.1" /db_xref="GeneID:1253077" /translation="MIPTATYRLQFRNGMTFDRAAALVPYLKNLGISHLYASPIFTAT KASTHGYDVTDANEIEPSIGGREGFERLVAELKAQGLGLIIDIVPNHMASSLENAWWR DVLEYGKESRYARHFDIDWSRRLTLPFLGDTFDAVLENGEIAIKPDPATGKPAFAYYD NYYPLAPATWQGREAEILALTDKAAIADLHERQPWKLMSWRDAARSLSYRRFFEVTGL VGMRVEDKTVFDDTHRLILELVRTGAVDGLRIDHIDGLADPKAYLARLRQEVGPACYI TVEKILAKGEQLPDDWPVSGTTGYEFIASLAEVLVDDEQIDNLRQAYETVKGAPVDMR AELRAAKLLMVDRNFEGEFTRLLALALSIASELQIAQEESVVRQALRELLIAFPVYRT YGTAEGLPPTDICLLHRIVERVKTLETPPQPEALTFLSRLLTGDVPASSQEEATQFRV RFQQLTGPLMAKSVEDTLFFRQNMGLALNEVGAEPVTHHFSIERFHHEMKTRQARQPD ALSGTSTHDTKRGEDARARLYTLTEAPEQWSECLARWRQMNQTHVKFLNDGTAPKSAD TWMLYQALTGVWPPVLQPQDETGLNALKTRFEAFVEKALREAKLRTDWVDSNEAYETA MLDYARYLLAPDNQTFLQDFYRSLQPFIRAGLVNSLTQTVIKLTAPGVPDIYQGSEAL NFSLVDPDNRREPDFATLAQQLDQLTPGVFSREESWLNGQVNQYVTAALLRLRQQNHE LFRFGDYIPLRAVGQRADKVIAYARVNHDDALIVVAPRLVFAECDGLLSQSHSGFWSG TDIIIPGQLNQHRYRNVLTQERLMPGERLSLASHQGGVLVLMSD" misc_feature complement(1638224..1640713) /locus_tag="STM1559" /note="Maltooligosyltrehalose synthase [Carbohydrate transport and metabolism]; Region: TreY; COG3280" /db_xref="CDD:442511" gene complement(1640710..1642500) /locus_tag="STM1560" /db_xref="GeneID:1253078" CDS complement(1640710..1642494) /locus_tag="STM1560" /note="similar to E. coli 1,4-alpha-glucan branching enzyme (AAC76457.1); Blastp hit to AAC76457.1 (728 aa), 30% identity in aa 235 - 407, 28% identity in aa 524 - 576" /codon_start=1 /transl_table=11 /product="putative alpha amylase" /protein_id="NP_460519.1" /db_xref="GeneID:1253078" /translation="MSSKIFCKSWGAEYIAADVVRFRLWATGQQKVMLRLAGKDQEMQ ANGDGWFTLDVAGVTPGTEYNFVLSDGMVVPDPASRAQKTDVNGPSYVVDPGSYTWRN TGWKGSRWEQAVVYEMHTGTFTPEGTFRAAIAKLPYLAELGVTVIEVMPVAQFGGERG WGYDGVLLYAPHSAYGTPDDFKAFIDAAHGYGLSVVLDIVLNHFGPEGNYLPLLAPAF FHKERMTPWGNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLRFDAIDQIEDSSARHVLV EIAQRIREDITDRPIHLTTEDSRNIISLHPRDQDGNAPLFTAEWNDDFHNAVHVFATG ETQAYYNDFADAPEKHLARALAEGFAYQGEISPQTGEPRGVKSTGQPPVAFVDFIQNH DQVGNRAQGDRLITLAGAERTKVLLATLLLSPHIPLLFMGEEYGESRPFLFFTDFHGD LARAVREGRAKEFADHAGENVPDPNAPETFQRSKLNWKQQHSEEGKAWLAFTRELLLL RQKHIVPLLSAARESSGTVLQTAPGFIAVSWRFPGGTLSLALNISATTVLLPDLPGKT LFAWPNESTGSLSQHSLIVRLAQGESAS" misc_feature complement(1640815..1642437) /locus_tag="STM1560" /note="malto-oligosyltrehalose trehalohydrolase; Region: trehalose_TreZ; TIGR02402" /db_xref="CDD:274114" misc_feature complement(order(1641316..1641318,1641607..1641609, 1641712..1641714)) /locus_tag="STM1560" /note="catalytic site [active]" /db_xref="CDD:200464" misc_feature complement(order(1641304..1641306,1641313..1641318, 1641517..1641519,1641529..1641531,1641601..1641603, 1641607..1641609)) /locus_tag="STM1560" /note="active site" /db_xref="CDD:200464" regulatory complement(1640714..1640719) /regulatory_class="ribosome_binding_site" /locus_tag="STM1560" /note="putative RBS for STM1559; RegulonDB:STMS1H001764" regulatory complement(1642495..1642500) /regulatory_class="ribosome_binding_site" /locus_tag="STM1560" /note="putative RBS for STM1560; RegulonDB:STMS1H001765" gene complement(1642623..1643414) /locus_tag="STM1561" /db_xref="GeneID:1253079" CDS complement(1642623..1643408) /locus_tag="STM1561" /codon_start=1 /transl_table=11 /product="putative outer membrane or secreted lipoprotein" /protein_id="NP_460520.1" /db_xref="GeneID:1253079" /translation="MKILPLALFIIPFLAGCGANNTPPQTPIPGEKTSAKLRTLETGA AAIQSRPPVDAISTYLDGFHFYSGDKNGQMEAHHYVTVLNEDVMQAVIYDGNTKNARL MGVEYIISERLFKTLPPEEKKLWHSHQYEVKSGSLVAPGLPQVADKALMSKIVNTYGK TWHTWHTDRDKTLPMGIPALMMGFTGDGQLDPALLADRDRRLGIDTQAIKRERQDLPE HPVVKGANAWEQGEVIQLQRVQGSGEHGRGDTAHFGTSEQSRQ" misc_feature complement(1642764..1643255) /locus_tag="STM1561" /note="Protein of unknown function (DUF1264); Region: DUF1264; pfam06884" /db_xref="CDD:429173" regulatory complement(1643409..1643414) /regulatory_class="ribosome_binding_site" /locus_tag="STM1561" /note="putative RBS for STM1561; RegulonDB:STMS1H001766" gene complement(1643551..1643894) /locus_tag="STM1562" /db_xref="GeneID:1253080" CDS complement(1643551..1643880) /locus_tag="STM1562" /note="similar to E. coli orf, hypothetical protein (AAC76534.1); Blastp hit to AAC76534.1 (112 aa), 43% identity in aa 5 - 110" /codon_start=1 /transl_table=11 /product="putative periplasmic transport protein" /protein_id="NP_460521.1" /db_xref="GeneID:1253080" /translation="MNKFSLATAGIIVAALVTSVSVNAATDTTKTNVTPKGMSCQEFV DLNPQTMAPVAFWVLNEDEDFKGGDYVDFQETETTAVPLAVELCKKNPQSELSKIKDE IKKELSK" misc_feature complement(1643554..1643859) /locus_tag="STM1562" /note="acid-activated periplasmic chaperone HdeB; Region: hdeB; PRK11566" /db_xref="CDD:183204" regulatory complement(1643889..1643894) /regulatory_class="ribosome_binding_site" /locus_tag="STM1562" /note="putative RBS for STM1562; RegulonDB:STMS1H001767" gene complement(1644230..1644674) /gene="osmC" /locus_tag="STM1563" /db_xref="GeneID:1253081" CDS complement(1644230..1644661) /gene="osmC" /locus_tag="STM1563" /note="osmotically inducible; similar to E. coli osmotically inducible protein (AAC74555.1); Blastp hit to AAC74555.1 (143 aa), 92% identity in aa 1 - 143" /codon_start=1 /transl_table=11 /product="putative resistance protein" /protein_id="NP_460522.1" /db_xref="GeneID:1253081" /translation="MTIHKKGQAHWEGDIKRGKGTVSTESGVLNQQPYGFNTRFEGAQ GTNPEELIGAAHAACFSMALSLMLGEAGFTPTSIDTTADVSLDKVEAGFAITKIALQS KVAVADIDASTFDQIIQKAKAGCPVSQVLNAEITLDYQLNA" misc_feature complement(1644248..1644649) /gene="osmC" /locus_tag="STM1563" /note="peroxiredoxin, OsmC subfamily; Region: osmo_induc_OsmC; TIGR03562" /db_xref="CDD:274650" regulatory complement(1644669..1644674) /regulatory_class="ribosome_binding_site" /gene="osmC" /locus_tag="STM1563" /note="putative RBS for osmC; RegulonDB:STMS1H001768" gene 1645161..1645389 /gene="yddX" /locus_tag="STM1564" /db_xref="GeneID:1253082" regulatory 1645161..1645166 /regulatory_class="ribosome_binding_site" /gene="yddX" /locus_tag="STM1564" /note="putative RBS for yddX; RegulonDB:STMS1H001769" CDS 1645174..1645389 /gene="yddX" /locus_tag="STM1564" /note="similar to E. coli orf, hypothetical protein (AAC74554.1); Blastp hit to AAC74554.1 (92 aa), 88% identity in aa 22 - 92" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460523.1" /db_xref="GeneID:1253082" /translation="MFTYHSANTSAAQPALVNAIEQGLRAELGVVTEDDILMELTKWV EASDNDILSDIYQQTINYVVSGQHPTL" misc_feature 1645174..1645386 /gene="yddX" /locus_tag="STM1564" /note="biofilm-dependent modulation protein; Provisional; Region: PRK11436" /db_xref="CDD:183135" gene 1645473..1645627 /gene="rpsV" /locus_tag="STM1565" /db_xref="GeneID:1253083" regulatory 1645473..1645478 /regulatory_class="ribosome_binding_site" /gene="rpsV" /locus_tag="STM1565" /note="putative RBS for rpsV; RegulonDB:STMS1H001770" CDS 1645484..1645627 /gene="rpsV" /locus_tag="STM1565" /note="similar to E. coli 30S ribosomal subunit protein S22 (AAC74553.1); Blastp hit to AAC74553.1 (45 aa), 86% identity in aa 1 - 44" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S22" /protein_id="NP_460524.1" /db_xref="GeneID:1253083" /translation="MKSNRQARHILGLDYRISNQRKVVTEGDTSSVVNNPTGRKRRAD SQK" misc_feature 1645484..1645615 /gene="rpsV" /locus_tag="STM1565" /note="stationary-phase-induced ribosome-associated protein; Region: rpsV; PRK10057" /db_xref="CDD:182214" gene 1645804..1647501 /gene="sfcA" /locus_tag="STM1566" /db_xref="GeneID:1253084" CDS 1645804..1647501 /gene="sfcA" /locus_tag="STM1566" /EC_number="1.1.1.38" /note="similar to E. coli NAD-linked malate dehydrogenase (malic enzyme) (AAC74552.1); Blastp hit to AAC74552.1 (574 aa), 92% identity in aa 10 - 574" /codon_start=1 /transl_table=11 /product="NAD-linked malate dehydrogenase" /protein_id="NP_460525.1" /db_xref="GeneID:1253084" /translation="METTTKKARSLYIPYAGPVLLEFPLLNKGSAFSVEERRNFNLSG LLPEVVESIEEQAERAWLQYQGFKTEIDKHIYLRNIQDTNETLFYRLVQNHLEEMMPV IYTPTVGAACERFSEIYRRARGVFISYPNRHNMDDILQNVPNHNIKVIVVTDGERILG LGDQGIGGMGIPIGKLSLYTACGGISPAYTLPVVLDVGTNNQQLLNDPLYMGWRHPRI TDDEYYAFVDEFIQAVKQRWPDILLQFEDFAQKNAMPLLTRYRDEICSFNDDIQGTAA VTVGTLIAASRAAGSQLSEQKIVFLGAGSAGCGIAEQIIAQTQREGLSEDAARQNVFM VDRFGLLTDRMPNLLPFQAKLVQKCDNLQHWDTENDVLSLLDVVRNVKPDILIGVSGQ TGLFTEEIIREMHKHCPRPIVMPLSNPTSRVEATPQDIIAWTEGNALVATGSPFSPVI WKDKVYPIAQCNNAYIFPGIGLGVIASGASRITDEMLMSASETLAKHSPLVNNGEGLV LPALKDIQVVSRAIAFAVGKMAQQQGVAVKTSAEALQQAIDDNFWKPEYRDYRRTSI" misc_feature 1645804..1647492 /gene="sfcA" /locus_tag="STM1566" /note="oxaloacetate-decarboxylating malate dehydrogenase; Region: PRK13529" /db_xref="CDD:237414" gene 1647775..1648797 /gene="adhP" /locus_tag="STM1567" /db_xref="GeneID:1253085" regulatory 1647775..1647780 /regulatory_class="ribosome_binding_site" /gene="adhP" /locus_tag="STM1567" /note="putative RBS for adhP; RegulonDB:STMS1H001771" CDS 1647787..1648797 /gene="adhP" /locus_tag="STM1567" /EC_number="1.1.1.1" /note="propanol preferring; similar to E. coli alcohol dehydrogenase (AAC74551.1); Blastp hit to AAC74551.1 (346 aa), 92% identity in aa 11 - 345" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase" /protein_id="NP_460526.1" /db_xref="GeneID:1253085" /translation="MKAAVVTQDHQVDVTEKTLRPLRHGEALLKMECCGVCHTDLHVK NGDFGDKTGVILGHEGIGVVAEVGPGVTSLKPGDRASVAWFYEGCGHCEYCNTGNETL CRNVKNAGYTVDGGMAEECIVVADYAVKVPEGLDSAAASSITCAGVTTYKAVKISHIK PGQWIAIYGLGGLGNLALQYAKNVFNAKVIAIDVNDGQLKLAEEMGADLTINSRTEDA AKIVQEKTGGAHAAVVTAVAKAAFNSAVDAVRAGGRVVAVGLPPEAMNLDIPRLVLDG IQVVGSLVGTRQDLTEAFQFAAEGKVVPKVALRPLEDINVIFKEMEQGQIRGRMVIDF RR" misc_feature 1647787..1648794 /gene="adhP" /locus_tag="STM1567" /note="ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional; Region: PRK09422" /db_xref="CDD:181842" gene complement(1648888..1649557) /gene="fdnI" /locus_tag="STM1568" /db_xref="GeneID:1253086" CDS complement(1648888..1649544) /gene="fdnI" /locus_tag="STM1568" /EC_number="1.17.1.9" /note="nitrate-inducible; similar to E. coli formate dehydrogenase-N, nitrate-inducible, cytochrome B556(Fdn) gamma subunit (AAD13440.1); Blastp hit to AAD13440.1 (217 aa), 98% identity in aa 1 - 217" /codon_start=1 /transl_table=11 /product="formate dehydrogenase-N, cytochrome B556(Fdn) gamma subunit" /protein_id="NP_460527.1" /db_xref="GeneID:1253086" /translation="MSKSKMIVRTKFVDRACHWTVVICFFLVALSGISFFFPTLQWLT QTFGTPQMGRILHPFFGIAIFIALMFMFVRFVHHNIPDKKDIPWLKNIVEVLKGNEHK VADVGKYNAGQKMMFWSIMSMIFVLLVTGVIIWRPYFAQYFPMQVVRYSLLIHAAAGI ILMHAILIHMYMAFWVKGSIKGMIEGKVSRRWAKKHHPRWYREIEKAEAKKESEEGIQ " misc_feature complement(1648894..1649544) /gene="fdnI" /locus_tag="STM1568" /note="formate dehydrogenase-N subunit gamma; Provisional; Region: PRK10179" /db_xref="CDD:182289" gene complement(1649537..1650432) /gene="fdnH" /locus_tag="STM1569" /db_xref="GeneID:1253087" CDS complement(1649537..1650421) /gene="fdnH" /locus_tag="STM1569" /EC_number="1.2.1.21" /note="nitrate-inducible; similar to E. coli formate dehydrogenase-N, nitrate-inducible, iron-sulfur beta subunit (AAD13439.1); Blastp hit to AAD13439.1 (294 aa), 93% identity in aa 1 - 294" /codon_start=1 /transl_table=11 /product="formate dehydrogenase-N, Fe-S beta subunit" /protein_id="NP_460528.1" /db_xref="GeneID:1253087" /translation="MSMETQDIIKRSATNAITPPPQARDYKAEVAKLIDVSSCVGCKA CQVACSEWNDIRDNVGHCVGVYDNPADLSAKSWTVMRFTETEQNGKLEWLIRKDGCMH CEDPGCLKACPSAGAIIQYANGIVDFQSEHCIGCGYCIAGCPFNIPRLNKEDNRVYKC TLCVDRVSVGQEPACVKTCPTGAIHFGTKKEMLELGEQRVEKLKARGFEHAGIYNPQG VGGTHVMYVLHHANQPELYHGLPKDPQIDTSINLWKGALKPLAAAGFIATFAGLIYHY IGIGPNKETDDDEEDHHE" misc_feature complement(1649552..1650403) /gene="fdnH" /locus_tag="STM1569" /note="formate dehydrogenase, beta subunit, Fe-S containing; Region: FDH-beta; TIGR01582" /db_xref="CDD:273705" regulatory complement(1649552..1649557) /regulatory_class="ribosome_binding_site" /gene="fdnI" /locus_tag="STM1568" /note="putative RBS for fdnI; RegulonDB:STMS1H001772" regulatory complement(1650427..1650432) /regulatory_class="ribosome_binding_site" /gene="fdnH" /locus_tag="STM1569" /note="putative RBS for fdnH; RegulonDB:STMS1H001773" gene complement(1650435..1653489) /gene="fdnG" /locus_tag="STM1570" /db_xref="GeneID:1253088" CDS complement(1650435..1653482) /gene="fdnG" /locus_tag="STM1570" /EC_number="1.17.1.9" /note="similar to E. coli formate dehydrogenase-N, nitrate-inducible, alpha subunit (AAD13438.1); Blastp hit to AAD13438.1 (1015 aa), 93% identity in aa 1 - 1015; contains selenocysteine tRNA suppressible codon" /codon_start=1 /transl_except=(pos:complement(1652895..1652897),aa:Sec) /transl_table=11 /product="putative molybdopterin oxidoreductases" /protein_id="NP_460529.1" /db_xref="GeneID:1253088" /translation="MDVSRRQFFKICAGGMAGTTVAALGFTPKMALAQARNYKLLRAK EIRNSCTYCSVGCGLLMYSLGDGAKNAKEAIYHIEGDPDHPVSRGALCPKGAGLLDYV HSEDRLRYPEYRAPGSDKWQRISWDDAFTRIAKLMKADRDANFIEKNEQGVTVNRWLS TGMLCASAASNETGMLTQKFARSLGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV DIKNANVVMVMGGNAAEAHPVGFRWAMEAKNNNDATLIVVDPRFTRTASVADIYAPIR SGTDITFLSGVLLYLIENNKINAEYVKHYTNASLLVRDDFAFDDGLFSGYDAQKRQYD KSSWNYQFDENGYAKRDETLTHPRCVWNLLKQHVSRYTPDVVENICGTPKADFLKVCE VLASTSVPDRTTTFLYALGWTQHTVGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN IQGLTDLGLLSTSLPGYLTLPSEKQADLQTYLAANTPKATLADQVNYWGNYPKFFVSL MKSFYGDAAQQENDWGFAWLPKWDQSYDVIKYFNMMDSGKVTGYFCQGFNPVASFPDK NKVVQSLSKLKYLVVIDPLVTETSTFWQNHGESNDVDPTTIQTEVFRLPSTCFAEEDG SIANSGRWLQWHWKGQDAPGEARNDGEILAGIYHRLREMYRAEGGKGAEPLLKMSWNY KQPDEPHSEEVAKENNGYALEDLYDANGTLLARKGQLLSSFALLRDDGTTSSSCWIYT GSWTEQGNQMSRRDNADPSGLGNTLGWAWAWPLNRRVLYNRASADPQGKPWDPKRMLI QWNGAKWTGNDIPDFNNAAPGSGTNPFIMQPEGLGRLFAIDKMAEGPFPEHYEPMETP LGTNPLHPNVVSNPAARLYEEDALRMGKKEQFPYVGTTYRLTEHFHTWTKHALLNAIA QPEQFVEISETLAAAKGIANGDYVKVSSKRGFIRAVAVVTRRLRTLHVNGQQVETVGI PIHWGFEGVARKGYIANTLTPNVGDANSQTPEYKAFLVNIEKA" misc_feature complement(1650441..1653479) /gene="fdnG" /locus_tag="STM1570" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:447860" misc_feature complement(order(1652766..1652771,1653207..1653209, 1653312..1653314,1653324..1653329,1653333..1653335)) /gene="fdnG" /locus_tag="STM1570" /note="[4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:239153" misc_feature complement(order(1651536..1651538,1651632..1651634, 1651722..1651724,1651731..1651739,1651797..1651799, 1651809..1651817,1652139..1652144,1652238..1652243, 1652250..1652258,1652643..1652645,1652649..1652651, 1652700..1652708,1652775..1652780,1652787..1652789, 1652793..1652795,1652895..1652897,1652907..1652909, 1653201..1653203)) /gene="fdnG" /locus_tag="STM1570" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:239153" regulatory complement(1653484..1653489) /regulatory_class="ribosome_binding_site" /gene="fdnG" /locus_tag="STM1570" /note="putative RBS for fdnG; RegulonDB:STMS1H001774" gene 1653807..1654641 /gene="yddG" /locus_tag="STM1571" /db_xref="GeneID:1253089" regulatory 1653807..1653812 /regulatory_class="ribosome_binding_site" /gene="yddG" /locus_tag="STM1571" /note="putative RBS for yddG; RegulonDB:STMS1H001775" CDS 1653817..1654641 /gene="yddG" /locus_tag="STM1571" /note="similar to E. coli orf, hypothetical protein (AAD13437.1); Blastp hit to AAD13437.1 (293 aa), 85% identity in aa 20 - 292" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_460530.3" /db_xref="GeneID:1253089" /translation="MVGLIRGVSEGLGPVGGAAMIYSLSGLLLIFTVGLPDIRRFPGR YLIAGSVLFVSYEICLALSLGYAATRHQAIEVGMVNYLWPSLTILFAILFNGQKTNWL IVPGLLIALTGVCWVLGGENGLNPGEIISNVATSPLSYLLAFLGAFIWATYCTVTNKY ARGFNGITVFVLLTAVALWLHYFLTPQPAMIFSLPVIAKLFTAALTLGFAYAAWNVGI LHGNVTIMAVGSYFTPVMSSALAALLLSSPLSFSFWQGAVMVCVGSLLCWLATRRR" misc_feature 1653817..1654638 /gene="yddG" /locus_tag="STM1571" /note="aromatic amino acid efflux DMT transporter YddG; Region: PRK11689" /db_xref="CDD:183277" gene 1655153..1656254 /gene="nmpC" /locus_tag="STM1572" /db_xref="GeneID:1253090" regulatory 1655153..1655158 /regulatory_class="ribosome_binding_site" /gene="nmpC" /locus_tag="STM1572" /note="putative RBS for nmpC; RegulonDB:STMS1H001776" CDS 1655166..1656254 /gene="nmpC" /locus_tag="STM1572" /note="predicted bacterial porin; outer membrane porin protein PMPD. (SW:OMPD_SALTY)" /codon_start=1 /transl_table=11 /product="new outer membrane protein" /protein_id="NP_460531.1" /db_xref="GeneID:1253090" /translation="MKLKLVAVAVTSLLAAGVVNAAEVYNKDGNKLDLYGKVHAQHYF SDDNGSDGDKTYARLGFKGETQINDQLTGFGQWEYEFKGNRTESQGADKDKTRLAFAG LKFADYGSFDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNTDF FGLVEGLNFAAQYQGKNDRDGAYESNGDGFGLSATYEYEGFGVGAAYAKSDRTNNQVK AASNLNAAGKNAEVWAAGLKYDANNIYLATTYSETLNMTTFGEDAAGDAFIANKTQNF EAVAQYQFDFGLRPSIAYLKSKGKNLGTYGDQDLVEYIDVGATYYFNKNMSTFVDYKI NLLDDSDFTKAAKVSTDNIVAVGLNYQF" misc_feature 1655205..1656251 /gene="nmpC" /locus_tag="STM1572" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" misc_feature order(1655253..1655255,1655259..1655261,1655277..1655279, 1655283..1655291,1655352..1655366,1655382..1655384, 1655388..1655396,1655400..1655402,1655406..1655417, 1655451..1655456,1655460..1655474,1655502..1655510, 1655607..1655609,1655613..1655618,1656129..1656134, 1656141..1656143,1656237..1656239,1656243..1656245, 1656249..1656251) /gene="nmpC" /locus_tag="STM1572" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238208" misc_feature order(1655274..1655276,1655337..1655339,1655454..1655456, 1655547..1655549,1655607..1655609) /gene="nmpC" /locus_tag="STM1572" /note="eyelet of channel [active]" /db_xref="CDD:238208" gene 1656398..1656778 /locus_tag="STM1573" /db_xref="GeneID:1253091" CDS 1656398..1656778 /locus_tag="STM1573" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460532.3" /db_xref="GeneID:1253091" /translation="MLDVYACHCTLCQKWSGGIAMYLEACGQPQLAPLSPEPPYFSSS SRGERYFCSGCGCPLWFRLTDTDRYFIPWTLLELNEVDRRRLILAAEIYTETQPAFWR LTGQYARLSGKEVEEMDSPCQLAH" misc_feature 1656401..1656709 /locus_tag="STM1573" /note="Uncharacterized conserved protein [Function unknown]; Region: COG3791" /db_xref="CDD:443005" gene complement(1656803..1658295) /gene="smvA" /locus_tag="STM1574" /db_xref="GeneID:1253092" CDS complement(1656803..1658290) /gene="smvA" /locus_tag="STM1574" /note="methyl viologen resistance protein SMVA. (SW:SMVA_SALTY)" /codon_start=1 /transl_table=11 /product="methyl viologen resistance protein" /protein_id="NP_460533.1" /db_xref="GeneID:1253092" /translation="MFRQWLTLVIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELL WIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAAAFSHTASWLIATRV LLAIGAAMIVPATLAGIRATFCEEKHRNMALGVWAAVGSGGAAFGPLIGGILLEHFYW GSVFLINVPIVLVVMGLTARYVPRQAGRRDQPLNLGHAVMLIIAILLLVYSAKTALKG HLSLWVISFTLLTGALLLGLFIRTQLATSRPMIDMRLFTHRIILSGVVMAMTAMITLV GFELLMAQELQFVHGLSPYEAGVFMLPVMVASGFSGPIAGVLVSRLGLRLVATGGMAL SALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPAEKAAAAGAIE TMAYELGAGLGIAIFGLLLSRSFSASIRLPAGLEAQEIARASSSMGEAVQLANSLPPT QGQAILDAARHAFIWSHSVALSSAGSMLLLLAVGMWFSLAKAQRR" misc_feature complement(1656806..1658290) /gene="smvA" /locus_tag="STM1574" /note="SmvA family efflux MFS transporter; Region: PRK14995" /db_xref="CDD:184957" regulatory complement(1658290..1658295) /regulatory_class="ribosome_binding_site" /gene="smvA" /locus_tag="STM1574" /note="putative RBS for smvA; RegulonDB:STMS1H001777" gene 1658402..1658986 /locus_tag="STM1575" /db_xref="GeneID:1253093" regulatory 1658402..1658407 /regulatory_class="ribosome_binding_site" /locus_tag="STM1575" /note="putative RBS for STM1575; RegulonDB:STMS1H001778" CDS 1658408..1658986 /locus_tag="STM1575" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator, TetR family" /protein_id="NP_460534.1" /db_xref="GeneID:1253093" /translation="MSYLNRDERREVILQAAMRVALAEGFAAMTVRRIASEADVAAGQ VHHHFSSAGELKALAFVHLIRTLLDAGQVPPPATWRARLHAMLGSEDGGFEPYIKLWR EAQILADRDPHIRDAYLLTMQMWHEETVTIIEQGKQAGEFTFTANATDIAWRLIALVC GLDGMYVLGIPEMADPAFKFHLDRMITLELFA" misc_feature 1658408..1658983 /locus_tag="STM1575" /note="TetR family transcriptional regulator; Provisional; Region: PRK14996" /db_xref="CDD:184958" gene 1659191..1660589 /gene="narU" /locus_tag="STM1576" /db_xref="GeneID:1253094" regulatory 1659191..1659196 /regulatory_class="ribosome_binding_site" /gene="narU" /locus_tag="STM1576" /note="putative RBS for narU; RegulonDB:STMS1H001779" CDS 1659201..1660589 /gene="narU" /locus_tag="STM1576" /note="nitrite extrusion protein 2 (nitrite facilitator 2). (SW:NARU_SALTY)" /codon_start=1 /transl_table=11 /product="MFS superfamily nitrate extrusion protein" /protein_id="NP_460535.1" /db_xref="GeneID:1253094" /translation="MTRQNENYNRYLLSDWRPENPAFWENKGKGIARRNLWISVSCLL LAFCVWMLFSAVAVNLNKIGFNFTTDQLFLLTALPSLSGAILRVPYSFMVPLFGGRKW TVLSTVILIIPCAWLGFAVQNPATPFGVFMLIALLCGFAGANFASSMGNISFFFPKAR QGSALGINGGLGNLGVSVMQLIAPLVIFLPIFTFLGVQGVPQPDGSLLALTNAAWIWV PLLAVATLAAWFGMNDIGSSKASVASQLPVLKRLHLWLLSLLYLATFGSFIGFSAGFA MLAKTQFPDVNILQLAFFGPFIGALARSAGGVISDKFGGVRVTLINFIFMALFTALLF LTLPGSGAGSFSAFYLVFMGLFLTAGLGSGSTFQMIAVIFRQITLYNVKLRGGSDEQA QREAVTDTAAALGFISAIGAVGGFFIPKAFGTSLALTGSPVGAMKIFLLFYLACVLLT WLVYGRRKPKQQ" misc_feature 1659201..1660586 /gene="narU" /locus_tag="STM1576" /note="nitrate/nitrite transport protein NarU; Provisional; Region: PRK15034" /db_xref="CDD:184994" misc_feature order(1659336..1659341,1659348..1659353,1659360..1659362, 1659459..1659461,1659624..1659629,1659633..1659641, 1659648..1659650,1659705..1659707,1659714..1659719, 1659726..1659728,1659981..1659983,1659990..1659995, 1660002..1660010,1660017..1660019,1660095..1660097, 1660107..1660109,1660272..1660277,1660287..1660289, 1660299..1660301,1660410..1660412,1660419..1660424, 1660431..1660436,1660443..1660445) /gene="narU" /locus_tag="STM1576" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340899" gene 1660668..1664421 /gene="narZ" /locus_tag="STM1577" /db_xref="GeneID:1253095" regulatory 1660668..1660673 /regulatory_class="ribosome_binding_site" /gene="narZ" /locus_tag="STM1577" /note="putative RBS for narZ; RegulonDB:STMS1H001780" CDS 1660681..1664421 /gene="narZ" /locus_tag="STM1577" /EC_number="1.7.99.4" /note="similar to E. coli cryptic nitrate reductase 2, alpha subunit (AAC74550.1); Blastp hit to AAC74550.1 (1246 aa), 90% identity in aa 1 - 1246" /codon_start=1 /transl_table=11 /product="nitrate reductase 2, alpha subunit" /protein_id="NP_460536.1" /db_xref="GeneID:1253095" /translation="MSKLLDRFRYFKQKGDTFADGHGQVMHTNRDWEDSYRQRWQFDK IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDLPNHEPRGCPRGASYSWY LYSANRLKYPLVRKRLIELWREALSRHSDPVLAWESIMNDPQKCQSYKQVRGHGGFIR SNWKELNQLIAAANVWTIKTYGPDRVAGFSPIPAMSMVSYAAGTRYLSLLGGTCLSFY DWYCDLPPASPMTWGEQTDVPESADWYNSAYIIAWGSNVPQTRTPDAHFFTEVRYKGT KTIAITPDYSEVAKLCDQWLAPKQGTDSALAMAMGHVILKEFHLDNPSDYFLNYCRRY TDMPMLVLLDERADGSYVPGRMMRASDLVDGLGEANNPEWKTVALNSTGELVAPNGSI GFRWGEKGKWNLEPVAAGVETELSLSLLGQHDDVAGVAFPYFGGNENPHFRSVRQEPV LVRQLPVKRLALADGSERMVVSVYDLVLANYGLDRGLDDGHSANNYNDVKAYTPAWGE QITGVPRRHIETIAREFAETAHKTHGRSMIILGAGVNHWYHMDMNYRGMINMLVFCGC VGQTGGGWAHYVGQEKLRPQTGWLPLAFALDWNRPPRQMNSTSFFYNHASQWRYEKLT AQELLSPLADPAKFSGHLIDFNVRAERMGWLPSAPQLNLNPLSVKASADKAGLSAADY TVQALKSGAIRFACEQPDSGHNHPRNLFVWRSNLLGSSGKGHEYMLKYLLGTDSGIQG EALGSSEGIKPEEVEWQSTAIEGKLDLLVTLDFRMSSTCLFSDIVLPTATWYEKDDMN TSDMHPFIHPLSAAVDPAWESKSDWEIYKGIASVFSEVCVGHLGQETDVVLHPLQHDS PAELAQPFDILDWRKGECELIPGKTAPNIVVVERDYPATYERFTSLGPLLDKLGNGGK GIAWNTQDEVDFLGKLNYTKHDGPAKGRPRIDTALDASEVILALAPETNGQVAVKAWQ ALGEMTGREHTHLAINKEDEKIRFRDIQAQPRKIISSPTWSGLESEHVSYNAGYTNVH ELIPWRTLSGRQQLYQDHAWMRAFGESLVAYRPPIDTRSVSEMREIPPNGFPEKALNF LTPHQKWGIHSTYSENLLMLTLSRGGPIVWISEADARELGIEDNDWIEAFNANGALTA RAVVSQRVPPGMTMMYHAQERIMNIPGSEVTGMRGGIHNSVTRVCPKPTHMIGGYAQL AYGFNYYGTVGSNRDEFIMIRKMKNINWLDDEGRDQVQEAKK" misc_feature 1660684..1664385 /gene="narZ" /locus_tag="STM1577" /note="Nitrate reductase alpha subunit [Energy production and conversion, Inorganic ion transport and metabolism]; Region: NarG; COG5013" /db_xref="CDD:444037" gene 1664404..1665962 /gene="narY" /locus_tag="STM1578" /db_xref="GeneID:1253096" regulatory 1664404..1664409 /regulatory_class="ribosome_binding_site" /gene="narY" /locus_tag="STM1578" /note="putative RBS for narY; RegulonDB:STMS1H001781" CDS 1664418..1665962 /gene="narY" /locus_tag="STM1578" /EC_number="1.7.99.4" /note="similar to E. coli cryptic nitrate reductase 2, beta subunit (AAC74549.1); Blastp hit to AAC74549.1 (514 aa), 94% identity in aa 1 - 514" /codon_start=1 /transl_table=11 /product="nitrate reductase 2, beta subunit" /protein_id="NP_460537.1" /db_xref="GeneID:1253096" /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTGREGMEYAWFNNV ETKPGIGYPKNWEDQQEWQGGWVRDVNGKIRPRLGGKMGVISKIFANPVIPQIDDYYE PFTFDYQHLHNAPESKHQPTARPRSLIDGKRMDKVIWGPNWEELLGGEFEKRARDRNF DNIQKEMYGQFENTFMMYLPRLCEHCLNPSCVATCPSGAIYKREEDGIVLIDQDKCRG WRLCISGCPYKKIYFNWKSGKSEKCIFCYPRIESGQPTVCSETCVGRIRYLGVLLYDA DRIEEAASTEHETDLYERQCDVFLNPHDPAVIEEALKQGIPQNVIDAAQRSPVYKMAM DWKLALPLHPEYRTLPMVWYVPPLSPIQSYADAGGLPHNGNILPAVETLRIPVQYLAN MLSAGDTGPVIRALKRMMAMRHYMRSQTVEGVTDTRAIEEVGLSIQQVEEMYRYLAIA NYEDRFVIPTSHREMARDAFPERNGCGFTFGDGCHGSDTKFNLFNSSRIDAINITEVR DKAEGE" misc_feature 1664418..1665872 /gene="narY" /locus_tag="STM1578" /note="Nitrate reductase beta subunit [Energy production and conversion, Inorganic ion transport and metabolism]; Region: NarY; COG1140" /db_xref="CDD:440755" gene 1665951..1666657 /gene="narW" /locus_tag="STM1579" /db_xref="GeneID:1253097" regulatory 1665951..1665956 /regulatory_class="ribosome_binding_site" /gene="narW" /locus_tag="STM1579" /note="putative RBS for narW; RegulonDB:STMS1H001782" CDS 1665962..1666657 /gene="narW" /locus_tag="STM1579" /EC_number="1.7.99.4" /note="assembly function; similar to E. coli cryptic nitrate reductase 2, delta subunit, assembly function (AAC74548.1); Blastp hit to AAC74548.1 (231 aa), 82% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="nitrate reductase 2, delta subunit" /protein_id="NP_460538.1" /db_xref="GeneID:1253097" /translation="MQILKAIGLLMEYPDDELWECRDEALTLIQHDAPMLADFTRELL YAPLLDKQAEWCEVFDRGRATSLLLFEHVHAESRDRGQAMVDLLSQYETVGLHLNCRE LPDHLPLYLEYLSVLPEAEAREGLQNIAPILALLGGRLKQRGAPWYQLFDALLTLAGS TLTSDSVTKQIIQESRDDTRQALDAVWEEEQVKFIEDNATTCDSSPLHHYQRRFSQDA APQYVDVSAGGPK" misc_feature 1665962..1666654 /gene="narW" /locus_tag="STM1579" /note="nitrate reductase molybdenum cofactor assembly chaperone; Region: PRK15054" /db_xref="CDD:185014" gene 1666644..1667334 /gene="narV" /locus_tag="STM1580" /db_xref="GeneID:1253098" regulatory 1666644..1666649 /regulatory_class="ribosome_binding_site" /gene="narV" /locus_tag="STM1580" /note="putative RBS for narV; RegulonDB:STMS1H001783" CDS 1666654..1667334 /gene="narV" /locus_tag="STM1580" /EC_number="1.7.99.4" /note="similar to E. coli cryptic nitrate reductase 2, gamma subunit (AAC74547.1); Blastp hit to AAC74547.1 (226 aa), 96% identity in aa 1 - 226" /codon_start=1 /transl_table=11 /product="nitrate reductase 2, gamma subunit" /protein_id="NP_460539.1" /db_xref="GeneID:1253098" /translation="MIQYLNVFFYDIYPYICATVFFLGSWLRYDYGQYTWRASSSQML DKRGMVIWSNLFHIGILGIFFGHLFGMLTPHWMYAWFLPIAVKQQMAMILGGVCGVLT LIGGAGLLWRRLTNQRVRATSTTPDIIIMSILLIQCLLGLSTIPFSAQYPDGSEMMKL VGWAQSIVTFRGGSSEMLSGVAFVFRVHLVLGMTIFLLFPFTRLVHVWSAPFEYFTRR YQIVRTRR" misc_feature 1666660..1667331 /gene="narV" /locus_tag="STM1580" /note="respiratory nitrate reductase, gamma subunit; Region: narI; TIGR00351" /db_xref="CDD:273030" gene 1667427..1668333 /gene="yddE" /locus_tag="STM1581" /db_xref="GeneID:1253099" regulatory 1667427..1667432 /regulatory_class="ribosome_binding_site" /gene="yddE" /locus_tag="STM1581" /note="putative RBS for yddE; RegulonDB:STMS1H001784" CDS 1667440..1668333 /gene="yddE" /locus_tag="STM1581" /note="hypothetical protein in nhoA 5'region. (SW:YDDE_SALTY)" /codon_start=1 /transl_table=11 /product="putative phenazine biosynthesis protein" /protein_id="NP_460540.1" /db_xref="GeneID:1253099" /translation="MKPQIYHVDAFTGDPFRGNSAGVVLHADTLSDAQMQLIARELRH SETAFLLKSEESDVRIRYFTPTVEVPICGHATVAAHYVRATVLGLGNTTVWQTSLAGR HRVEIHAEHNDYRITLEQGQPSFEPPLVGEIRAAIITALNLTEDDIVPGAPIQVASTG HAKVMILLKPDVDIDALSPNLAALTAISQQIGCNGFFPFQIRPGKNETDGRMFSPAIG IVEDPVTGNANGPMGAWLVHHGLMAHDGKTLQIQGHQGRALGKEGTVDVTVTIRDNQP ENVTISGQAVILFHAEWAITF" misc_feature 1667440..1668324 /gene="yddE" /locus_tag="STM1581" /note="PhzF family isomerase; Region: PRK10281" /db_xref="CDD:182354" gene complement(1668369..1669227) /gene="nhoA" /locus_tag="STM1582" /db_xref="GeneID:1253100" CDS complement(1668369..1669214) /gene="nhoA" /locus_tag="STM1582" /EC_number="2.3.1.118" /note="N-hydroxyarylamine O-acetyltransferase. (SW:NHOA_SALTY)" /codon_start=1 /transl_table=11 /product="putative arylamine N-acetyltransferase" /protein_id="NP_460541.1" /db_xref="GeneID:1253100" /translation="MTSFLHAYFTRLHCQPLGVPTVEALRTLHLAHNCAIPFENLDVL LPREIQLDETALEEKLLYARRGGYCFELNGLFERALRDIGFNVRSLLGRVILSHPASL PPRTHRLLLVDVEDEQWIADVGFGGQTLTAPLRLQAEIAQQTPHGEYRLMQEGSTWIL QFRHHEHWQSMYCFDLGVQQQSDHVMGNFWSAHWPQSHFRHHLLMCRHLPDGGKLTLT NFHFTRYHQGHAVEQVNVPDVPSLYQLLQQQFGLGVNDVKHGFTEAELAAVMAAFDTH PEAGK" misc_feature complement(1668372..1669214) /gene="nhoA" /locus_tag="STM1582" /note="N-hydroxyarylamine O-acetyltransferase; Provisional; Region: PRK15047" /db_xref="CDD:185007" regulatory complement(1669222..1669227) /regulatory_class="ribosome_binding_site" /gene="nhoA" /locus_tag="STM1582" /note="putative RBS for nhoA; RegulonDB:STMS1H001785" gene complement(1669498..1670137) /locus_tag="STM1583" /db_xref="GeneID:1253101" CDS complement(1669498..1670130) /locus_tag="STM1583" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460542.1" /db_xref="GeneID:1253101" /translation="MPYTSVSTYARALSGNKLPHVAAGDYENKLSTKIMKGILYVLTA GLAYGFTRVIEHYCNVTPKVAEFCANAGNIHNHLADAVRDGLFTIDVELSDGRMLTFE QLSLIAEGKPIVRISDGEHTVEVEGTFEEICMRLEEGFFEAPAYYDYDIDEKYKTVRE RMAAYNALPQALGAIPCLEYYIARASNMQEAKAQWAADIKARYHNYLDNY" regulatory complement(1670132..1670137) /regulatory_class="ribosome_binding_site" /locus_tag="STM1583" /note="putative RBS for STM1583; RegulonDB:STMS1H001786" gene 1670632..1672136 /gene="ansP" /locus_tag="STM1584" /db_xref="GeneID:1253102" regulatory 1670632..1670637 /regulatory_class="ribosome_binding_site" /gene="ansP" /locus_tag="STM1584" /note="putative RBS for ansP; RegulonDB:STMS1H001787" CDS 1670643..1672136 /gene="ansP" /locus_tag="STM1584" /note="L-asparagine permease (L-asparagine transport protein). (SW:ANSP_SALTY)" /codon_start=1 /transl_table=11 /product="APC family, L-asparagine transport protein" /protein_id="NP_460543.1" /db_xref="GeneID:1253102" /translation="MKTQTTHAAEQHAAKRRWLNAHEEGYHKAMGNRQVQMIAIGGAI GTGLFLGAGARLQMAGPALALVYLICGIFSFFILRALGELVLHRPSSGSFVSYAREFL GEKAAYVAGWMYFINWAMTGIVDITAVALYMHYWGAFGDVPQWVFALGALTIVGTMNM IGVKWFAEMEFWFALIKVLAIVIFLVVGTIFLGTGQPLEGNATGFHLITDNGGFFPHG LLPALVLIQGVVFAFASIELVGTAAGECKDPQKMVPKAINSVIWRIGLFYVGSVVLLV LLLPWNAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSMS MGGSAPKFMAKMSRQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNFASLGIIAS WAFIMVCQMRLRQAIKEGKAADVSFKLPGAPFTSWLTLLFLLSVLVLMAFDYPNGTYT IASLPLIAILLVAGWFGVRRRVAEIHRTAPVTADSTESVVLKEEAAT" misc_feature 1670643..1672133 /gene="ansP" /locus_tag="STM1584" /note="L-asparagine permease; Region: PRK15049" /db_xref="CDD:185009" gene complement(1672213..1672441) /locus_tag="STM1585" /db_xref="GeneID:1253103" CDS complement(1672213..1672434) /locus_tag="STM1585" /note="similar to E. coli orf, hypothetical protein (AAC75872.1); Blastp hit to AAC75872.1 (72 aa), 48% identity in aa 1 - 71" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460544.1" /db_xref="GeneID:1253103" /translation="MKKLFICSGLGMMFFMLAGCTTNYVMTTKNGQTIVTQGKPQLDK ETGMTSYTDQEGNQREINSNDVAQLIKAD" misc_feature complement(1672222..1672431) /locus_tag="STM1585" /note="Bacterial protein of unknown function (DUF903); Region: DUF903; cl05512" /db_xref="CDD:471259" regulatory complement(1672436..1672441) /regulatory_class="ribosome_binding_site" /locus_tag="STM1585" /note="putative RBS for STM1585; RegulonDB:STMS1H001788" gene complement(1672579..1673652) /locus_tag="STM1586" /db_xref="GeneID:1253104" CDS complement(1672579..1673640) /locus_tag="STM1586" /note="similar to E. coli putative receptor (AAC74534.1); Blastp hit to AAC74534.1 (353 aa), 89% identity in aa 1 - 353" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460545.1" /db_xref="GeneID:1253104" /translation="MHLRHLFSPRLRGSLLLGSLLVASSFSTLAAEDMLRKAVGKGAY EMAWSQQENALWLATSQSRKLDKGGVVYRLDPVTLEITQAIHNDLKPFGATINAATQT LWFGNTINSAVTAIDAKTGDVKGRLVLDARKRTEEVRPLQPRELVADAATNTIYISGV GKESAIWVVDGETIKLKTTIENTGKMSTGLALDSKAQRLYTTNADGEFITIDTASNKI LSRKKLLDDGKEHFFINLSLDTAGHRAFITDSKATEVLVVDTRNGNILAKIAAPASLA VLFNPTRNEAYVTHRQAGQVSVIDAKTYNVVKTFDTPTYPNSLALSADGKTLYVSVKQ KSTREQEATQPDDVIRIAL" misc_feature complement(1673269..>1673523) /locus_tag="STM1586" /note="Streptogramin lyase [Defense mechanisms]; Region: Vgb; COG4257" /db_xref="CDD:443399" misc_feature complement(1672648..1673280) /locus_tag="STM1586" /note="DNA-binding beta-propeller fold protein YncE [General function prediction only]; Region: YncE; COG3391" /db_xref="CDD:442618" regulatory complement(1673647..1673652) /regulatory_class="ribosome_binding_site" /locus_tag="STM1586" /note="putative RBS for STM1586; RegulonDB:STMS1H001789" gene 1673893..1676024 /gene="yncD" /locus_tag="STM1587" /db_xref="GeneID:1253105" regulatory 1673893..1673898 /regulatory_class="ribosome_binding_site" /gene="yncD" /locus_tag="STM1587" /note="putative RBS for yncD; RegulonDB:STMS1H001790" CDS 1673904..1676024 /gene="yncD" /locus_tag="STM1587" /note="similar to E. coli putative outer membrane receptor for iron transport (AAC74533.1); Blastp hit to AAC74533.1 (700 aa), 84% identity in aa 1 - 700" /codon_start=1 /transl_table=11 /product="putative outer membrane receptor" /protein_id="NP_460546.1" /db_xref="GeneID:1253105" /translation="MKIISVRQRLYPALLLPLTFSPVLQAASAPNEQTMIVTATPQTV SELDTPAAVSVIEGEDMRLATPRVNLSESLTSVPGLQVQNRQNYAQDLQISIRGFGSR SAFGVRGIRLYVDGIPATMPDGQGQISNIDINSIQDVEVLRGPFSALYGNASGGVINV TTETGRQPPTLEASSYYGSYGSWRYGLKATGAMGDGTQPGDVYYTVSTTRFTTHGYRD HSGARKNLANAKLGVRLDDVSKLSLIFNSVDIKADDPGGLTESEWKADPQQAPRAEQY NTRKTIKQTQAGLRYERQLSAQDDISVMAYAGERETTQYQSIPLVAQLKPAQAGGVIT LQRHYQGIDSRWTHRGELGVPVTFTGGVNYENMSENRKGYNNFRLNNGTPEFGHKGDL RRDERNLMWNVDPYLQTQWQLTQKLSLDAGVRYSSVWFDSNDHYIAPGNGDDSGDASY HHWLPAGSLKYALTDAWNLYLAAGRGFETPTINELSYRADGQSGFNFDLKPSTNDTVE VGSKTRIGNGLLTAALFQTDTDDEIVVASSMGGRTTYKNAGKTRRQGAELALDQRFAG DWRVKASWTWLDATYRSNVCQGQNCDGNRMPGIARNMGFASLGFIPDEGWYAGTDVRY MGDIMANDENTAKAPSYTVVGLNTGYKFNYSQLTVDIFGRVDNLFDKEYIGSVIVNES NGRYYEPAPGRNYGVGINLAWQFE" misc_feature 1674006..1676021 /gene="yncD" /locus_tag="STM1587" /note="TonB-dependent receptor PqqU; Region: TonB_rec_PqqU; NF041535" /db_xref="CDD:469420" gene complement(1676091..1676773) /gene="yncC" /locus_tag="STM1588" /db_xref="GeneID:1253106" CDS complement(1676091..1676756) /gene="yncC" /locus_tag="STM1588" /note="similar to E. coli orf, hypothetical protein (AAC74532.1); Blastp hit to AAC74532.1 (240 aa), 58% identity in aa 20 - 238" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_460547.1" /db_xref="GeneID:1253106" /translation="MPGTEKTQHISLTTQVENRLKHQLSIGALKPGARLITKNIAQEL GVSITPVREALLRLVSSSALAVAPAQAFMVPEISLESLLEINTIRTALEEMAVVAAAG KITPDREQTLNALLDEFQQALESGVMEKILLANRAFRFEIYHYADMPTLYAMIEQLWV RLGPSLHFLYDNFKLDDYQNGVNLYRKLLNALVTGDKEASRHCLQNVLQQNVATIKNQ YFM" misc_feature complement(1676094..1676756) /gene="yncC" /locus_tag="STM1588" /note="GntR family transcriptional regulator; Region: PRK11414" /db_xref="CDD:183126" regulatory complement(1676768..1676773) /regulatory_class="ribosome_binding_site" /gene="yncC" /locus_tag="STM1588" /note="putative RBS for yncC; RegulonDB:STMS1H001791" gene complement(1677090..1678160) /gene="yncB" /locus_tag="STM1589" /db_xref="GeneID:1253107" CDS complement(1677090..1678160) /gene="yncB" /locus_tag="STM1589" /note="similar to E. coli putative oxidoreductase (AAC74531.1); Blastp hit to AAC74531.1 (376 aa), 85% identity in aa 28 - 375" /codon_start=1 /transl_table=11 /product="putative NADP-dependent oxidoreductase" /protein_id="NP_460548.1" /db_xref="GeneID:1253107" /translation="MMDYARHEENRMKQQTNRNRRWVLASRPHGAPQMDNFRLEEDDV ATPGEGQVLLRTVFLSLDPYMRGRMSDEPSYAPPVEPGCVMVGGTVSRVVASNHPDYR PDEWVLSYNGWQDYDISDGEGLVKLGDNPQHPSWSLGILGMPGFTAYMGLLDIGQPKE GETLVVAAATGPVGATVGQIGKLKGCRVVGIAGGAEKCRHATDVLGFDLCLDHHADNF PQQLAQACPQGIDIYYENVGGKVFDAVLPLLNTSARIPLCGLVSGYNATALPDGPDRL PLLMATLLKKRIRLQGFIINQDYGHRIHEFQQEMGRWIKEGKIHYREQITDGLENAPE AFMGLLAGKNFGKVVIRLADDA" misc_feature complement(1677105..1678115) /gene="yncB" /locus_tag="STM1589" /note="NADPH-dependent curcumin reductase CurA [Secondary metabolites biosynthesis, transport and catabolism, General function prediction only]; Region: CurA; COG2130" /db_xref="CDD:441733" gene 1678327..1678854 /gene="yncA" /locus_tag="STM1590" /db_xref="GeneID:1253108" regulatory 1678327..1678332 /regulatory_class="ribosome_binding_site" /gene="yncA" /locus_tag="STM1590" /note="putative RBS for yncA; RegulonDB:STMS1H001792" CDS 1678339..1678854 /gene="yncA" /locus_tag="STM1590" /EC_number="2.3.1.-" /note="similar to E. coli putative resistance protein (AAC74530.1); Blastp hit to AAC74530.1 (172 aa), 87% identity in aa 1 - 170" /codon_start=1 /transl_table=11 /product="putative acyltransferase" /protein_id="NP_460549.1" /db_xref="GeneID:1253108" /translation="MTIRFADKADCAAITEIYNHAVLHTAAIWNDRTVDTDNRLAWYE ARQLLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLS RLIDEARRCGKHVMVAGIESQNAASIRLHHSLGFTVTAQMPQVGVKFGRWLDLTFMQL QLDEHAAPDAC" misc_feature 1678339..1678824 /gene="yncA" /locus_tag="STM1590" /note="L-amino acid N-acyltransferase MnaT [Amino acid transport and metabolism]; Region: MnaT; COG1247" /db_xref="CDD:440860" gene 1678840..1679303 /gene="ydcZ" /locus_tag="STM1591" /db_xref="GeneID:1253109" regulatory 1678840..1678845 /regulatory_class="ribosome_binding_site" /gene="ydcZ" /locus_tag="STM1591" /note="putative RBS for ydcZ; RegulonDB:STMS1H001793" CDS 1678854..1679303 /gene="ydcZ" /locus_tag="STM1591" /note="similar to E. coli orf, hypothetical protein (AAC74529.1); Blastp hit to AAC74529.1 (149 aa), 86% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460550.1" /db_xref="GeneID:1253109" /translation="MNQSLTLIFLIAAGVGLVVQNSIMVRITQTSSTILIAMLLNSLV GIVLFVTILWFKQGATGFGELVASVRWWTLIPGLLGSFFVFASISGYQNVGAATTIAV LVASQLIGGLALDIARSHGVTLRAMVGPAFGALLLVIGAWLIAKRQF" misc_feature 1678866..1679282 /gene="ydcZ" /locus_tag="STM1591" /note="Putative inner membrane exporter, YdcZ; Region: DMT_YdcZ; pfam04657" /db_xref="CDD:428052" gene complement(1679308..1679552) /gene="ydcY" /locus_tag="STM1592" /db_xref="GeneID:1253110" CDS complement(1679308..1679541) /gene="ydcY" /locus_tag="STM1592" /note="similar to E. coli orf, hypothetical protein (AAC74528.1); Blastp hit to AAC74528.1 (77 aa), 85% identity in aa 1 - 77" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460551.1" /db_xref="GeneID:1253110" /translation="MSHLEEVSARVDAAIAESVIAHMNELLIALSDDAELRREDRYVQ QQRLRTAIAHHGRQYQEDRDARREQLTKGGTIL" misc_feature complement(1679314..1679541) /gene="ydcY" /locus_tag="STM1592" /note="Protein of unknown function (DUF2526); Region: DUF2526; pfam10735" /db_xref="CDD:402390" regulatory complement(1679547..1679552) /regulatory_class="ribosome_binding_site" /gene="ydcY" /locus_tag="STM1592" /note="putative RBS for ydcY; RegulonDB:STMS1H001794" gene 1679760..1681084 /gene="srfA" /locus_tag="STM1593" /db_xref="GeneID:1253111" regulatory 1679760..1679765 /regulatory_class="ribosome_binding_site" /gene="srfA" /locus_tag="STM1593" /note="putative RBS for srfA; RegulonDB:STMS1H001795" CDS 1679765..1681084 /gene="srfA" /locus_tag="STM1593" /note="SrfA (gi|8347258)" /codon_start=1 /transl_table=11 /product="ssrAB activated gene" /protein_id="NP_460552.1" /db_xref="GeneID:1253111" /translation="MAKSLLRSGNLDDYQAVGGGGQAVFESALQIRETLRLRKQQAMV DCLAIPQLNDNGDRVDWYSPIEGQAIAWKAADEETRSRALRYLASTFESAAALSRKSL QSGKTALQLFGSLLEKATQFPGENHVFLVNGKPVITFWGFVNLNENTRDDVLDCLRVT EAIPDIPLVEPEPEEKPLVEAAFSQADEPLLTSVIEPPKMPEEPAAPPVIVSEPKPAA PIPVAEAKRARRLPLWSLPVAAVVIAAVATPFFWPSSSVDGASPVRAAPVATAKTDVT PLPELTAHLPLHRAEVTPAPKAAPLPEAPVIIAAIPKDALVMDNTQMKLGTTRFLNGS WRISVDVKDPITGKPPSLRYQIQNNKGIARVVHGDNVVCRAEIFSGLHQTGELMIKSR GNARCTDGSRYPMPEITCKAGVNDVATCTARYGDHAAIPLTFKKIGA" misc_feature 1679771..1681075 /gene="srfA" /locus_tag="STM1593" /note="SrfA family protein; Region: SrfA_fam; NF040486" /db_xref="CDD:468511" gene 1681083..1684070 /gene="srfB" /locus_tag="STM1594" /db_xref="GeneID:1253112" regulatory 1681083..1681088 /regulatory_class="ribosome_binding_site" /gene="srfB" /locus_tag="STM1594" /note="putative RBS for srfB; RegulonDB:STMS1H001796" CDS 1681089..1684070 /gene="srfB" /locus_tag="STM1594" /note="SrfB (gi|8347259)" /codon_start=1 /transl_table=11 /product="ssrAB activated gene" /protein_id="NP_460553.1" /db_xref="GeneID:1253112" /translation="MLVNLCDYKQSVTLIANSGVQFLDFGLTPQESAHYGRFVRKTAN GPLLRLDFDLTSGRYTLPGRAGGQPEVVKPESTQTLHYSLDVLDGIWLPLPFLRFNPP RTFIDGPDNWARIQVRKLSEPDSAGNTHRITLAFDSQLAKNMPAALAPCENDLLNGTR FALAWRDEEVADFLDQTWIDGWLRESFLQYASQVENRSEQAIQQALRSFEYQAHWLNL LTLLGEQLTVPEVKFVTHTLSTPAIPVDLILDVGNTHTCGVLIEDHGDANDGLRQTAE LQVRSLSEPQYLNDPLFTSRVEFSEARFGKQHFSVESGRDDAFVWPSIVRVGDEARAL AMQRVGTEGSSGISSPRRYLWDETPALQDWRFSQIHGKTQREPLATAFPLMNLMNDDG QPLFRLPYEERLPVFSPQYSRSTLMTHMLCEILAQALGQINSVATRLRLGFPASPRQL RTLILTLPSAMPKQEREIFRQRMFEALALVWKAMGWHPQDEDFTTPKQREKSVVPVPE IQMEWDEASCGQLVWLYNEAISHYAGRTESFFNALARPDRQPEPGVVPGRALRVASID IGGGTTDMAIVHYQLDDGVGANVKITPHLLFREGFKVAGDDLLLDIIQRCVLPSLQTA LQRAGVTDAAALLATLFGDSGRIDTQAILRQQTALQLFMPLGHAVLSAWEQSDINDPF AGLHATFGDLLIRRPTSNVMNYIQQAIDHALPSGSPTFDIFNVPLQIQFSQLQESLLA GQFTLTTPLHAVCEAISHYHCDILLVTGRPTCLPGVQALIRHLQPVPVNRIVWMDKYQ VHEWYPFSQQGRIGNPKSTAAVGAMLCSLALDLRLPRFNFKAADIGAYSTVRYLGVLD NTVNTLRDENIWYHEIDLDKPGATLDARLHFPLRGNVTLGFRQLANSRWPATPLYCLS INSAELAKTIAGDGVLNVRLKLRGSSKDSAPESFILSDAWLQDGTPVAADALTLKLNT LADRRHSGSHYWIDSGSVYLK" misc_feature 1681089..1684067 /gene="srfB" /locus_tag="STM1594" /note="Virulence factor SrfB-related protein [Secondary metabolites biosynthesis, transport and catabolism]; Region: SrfB; COG4457" /db_xref="CDD:443555" gene 1684062..1686211 /gene="srfC" /locus_tag="STM1595" /db_xref="GeneID:1253113" regulatory 1684062..1684067 /regulatory_class="ribosome_binding_site" /gene="srfC" /locus_tag="STM1595" /note="putative RBS for srfC; RegulonDB:STMS1H001797" CDS 1684067..1686211 /gene="srfC" /locus_tag="STM1595" /note="predicted coiled-coil structure; SrfC (gi|8347260)" /codon_start=1 /transl_table=11 /product="ssrAB activated gene" /protein_id="NP_460554.1" /db_xref="GeneID:1253113" /translation="MTKPLNTTQAVIEWVNNTRRYATRLDDEADALLAQLTLAAADES ALNAACASHGCVGLYGYAQSAKAHLLTTLCGNENGKLEIITPDRDYDYFSHINPGHAP ANMAIRFTRDIFSNESGWPLRLRLISEAELVQIFIAWTSSSPVCRQVEKSIITSRLEK WQSLRQPQPVPGVTAEEVATIASFWRSCLPSARQHIDDATWQHFASLLPALDLTTRAH AWALLWGEQPEITQQWLALAHMLQQTGHAGELAAPLSLLVDHFGLPAENFLTQMALTA NDTQSDVVVHPVKEGRLLNAVSLSLDSLALLTRELVLSVENNVLDNVDLLDIPVAPDS HPHPLWRAKLGWMLAHYRQQVQPDVLVICNALASRSQTSTAAHHLLEWVNATQPQHES ALPGVVWAITPQDARFATQQNLDEAVQQLMGKPGVHWGTLQALDKHSMQRLVEWLSQA TSAPQRQARLQALREQLRGRVRDLLPMFDDARLPVETVIRRLQAQAARHGDLLAGLLP PVQNFEALLSTRQSREEQVCGLFNDAIDLFADEPTRASASEGHETGYQAHKMWINHLR QWAHCRDNAQRLGLEPQMLNAVAEILITASYRLGLPQQLQKTMQREEVSGAQLHAIIG NFIAWLGYANIEEAQRPASRVQKGAAIFAATPRSTMLRLTKLDEQPVHAASRYVYDWL VALYTLANENAGYRHPQDVTDVDRAQLIALIA" misc_feature 1684100..1686208 /gene="srfC" /locus_tag="STM1595" /note="Putative bacterial virulence factor; Region: Virul_Fac; cl19867" /db_xref="CDD:473239" gene complement(1686256..1686528) /gene="ydcX" /locus_tag="STM1596" /db_xref="GeneID:1253114" CDS complement(1686256..1686519) /gene="ydcX" /locus_tag="STM1596" /note="similar to E. coli orf, hypothetical protein (AAC74527.1); Blastp hit to AAC74527.1 (82 aa), 72% identity in aa 4 - 82" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460555.1" /db_xref="GeneID:1253114" /translation="MLLRLINLDVRQIKRAYCARFFLWLAWMPDMTLFQKILIFYAVM AVISSLITWFLTHDKKRIRFLSAFLVGATWPISFPVALLFSLF" misc_feature complement(1686259..1686420) /gene="ydcX" /locus_tag="STM1596" /note="Toxin GhoT_OrtT; Region: Toxin_GhoT_OrtT; pfam10753" /db_xref="CDD:431472" regulatory complement(1686523..1686528) /regulatory_class="ribosome_binding_site" /gene="ydcX" /locus_tag="STM1596" /note="putative RBS for ydcX; RegulonDB:STMS1H001798" gene complement(1686828..1688287) /gene="ydcW" /locus_tag="STM1597" /db_xref="GeneID:1253115" CDS complement(1686828..1688273) /gene="ydcW" /locus_tag="STM1597" /EC_number="1.2.1.8" /note="similar to E. coli putative aldehyde dehydrogenase (AAC74526.1); Blastp hit to AAC74526.1 (474 aa), 83% identity in aa 1 - 474" /codon_start=1 /transl_table=11 /product="putative aldehyde dehydrogenase" /protein_id="NP_460556.3" /db_xref="GeneID:1253115" /translation="MTIWENAMQYQLLINGVLVDGEGERQSVYNPATGEVILEIAEAS PAQVDAAVQAADNAFAEWGQTTPKARAECLLKLADSIEQNALEFARLESQNCGKPLHC VINDEIPAIVDVFRFFAGAARCLSGLAAGEYLEGHTSMIRRDPIGVVASIAPWNYPLM MAAWKLAPALAAGNCVVIKPSEITPLTALKLAVLAKDIFPPGVLNVLFGRGQTVGDVL TGHEKVRMVSLTGSIATGEHILRHTAPAIKRTHMELGGKAPVIVFDDADLDAVAQGVR TFGFYNAGQDCTAACRIYAQRGIYDALVEKLGNAVSSLKMGAPEDESTELGPLSSLAH LKRVTAAVEEAKALSHIRVITGGSQTEGKGYYFAPTLLADAKQEDAIVQREVFGPVVS ITVFDDEDQVLRWANDSRYGLASSVWTQDVGRAHRLSARLQYGCTWINTHFMLVSEMP HGGQKQSGYGKDMSLYGLEDYTLVRHIMVKH" misc_feature complement(1686834..1688249) /gene="ydcW" /locus_tag="STM1597" /note="1-pyrroline dehydrogenase; Region: ABALDH; TIGR03374" /db_xref="CDD:132417" misc_feature complement(order(1686837..1686854,1686891..1686893, 1686906..1686911,1686924..1686932,1686957..1686974, 1686978..1686980,1686987..1686989,1686993..1686998, 1687005..1687019,1687512..1687514,1687533..1687535, 1687554..1687556,1687563..1687565,1687599..1687601, 1687848..1687853,1687869..1687871,1687875..1687880, 1687884..1687895,1687905..1687907,1687935..1687937, 1688076..1688078)) /gene="ydcW" /locus_tag="STM1597" /note="tetrameric interface [polypeptide binding]; other site" /db_xref="CDD:143411" misc_feature complement(order(1687119..1687121,1687272..1687274, 1687413..1687415,1687509..1687511,1687515..1687517, 1687560..1687562,1687569..1687571,1687578..1687586, 1687626..1687628,1687641..1687643,1687728..1687733, 1687737..1687739,1687809..1687811,1687815..1687820)) /gene="ydcW" /locus_tag="STM1597" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143411" misc_feature complement(order(1687413..1687415,1687422..1687424, 1687515..1687517,1687806..1687808)) /gene="ydcW" /locus_tag="STM1597" /note="catalytic residues [active]" /db_xref="CDD:143411" misc_feature complement(order(1686939..1686941,1687416..1687418)) /gene="ydcW" /locus_tag="STM1597" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143411" regulatory complement(1688282..1688287) /regulatory_class="ribosome_binding_site" /gene="ydcW" /locus_tag="STM1597" /note="putative RBS for ydcW; RegulonDB:STMS1H001799" gene complement(1688388..1689812) /gene="ydcR" /locus_tag="STM1598" /db_xref="GeneID:1253116" CDS complement(1688388..1689812) /gene="ydcR" /locus_tag="STM1598" /note="similar to E. coli multi modular; putative transcriptional regulator; also putative ATP-binding component of a transport system (AAC74521.1); Blastp hit to AAC74521.1 (468 aa), 87% identity in aa 1 - 468" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_460557.1" /db_xref="GeneID:1253116" /translation="MKKYQRLAEQIREQIASGVWQPGDRLPSLREQVASSGMSFMTVG HAYQLLESQGRIIARPQSGYYVAPHPVCRSVATAAHVIRDEAVDINTYIFEMLQASRD TSVVPFASAFPDPRLFPLPQLNRSLAQVSKTATAMSVIENLPPGNAELRYAIARRYAQ QGITVSPDEIVITAGALEALNLSLQAVTAPGDWVVVENPCFYGALQALERLRLKALSI PTDVKEGIDLMALEQALQEYPVKACWLMTNSQNPLGFTLSAEKKARLVALLTHHNVTL IEDDVYSELYFGREKPLPAKAWDRDDTVLHCSSFSKCLVPGFRIGWVAGGSHARQIQR LQLMSTLSTSSPMQLALVDYLSTRRYDAHLRRLRRQLAERKQQAWQTLLRHLPAEVKI HHNDSGYFLWLELPEQLDAGELSAKALEHLISIAPGKMFSTSGAWTRFFRFNTAWHWG EREEQAVKQLGSLIREMLSAKSLV" misc_feature complement(1688409..1689812) /gene="ydcR" /locus_tag="STM1598" /note="DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; Region: ARO8; COG1167" /db_xref="CDD:440781" gene complement(1689948..1690725) /gene="pdgL" /locus_tag="STM1599" /db_xref="GeneID:1253117" CDS complement(1689948..1690718) /gene="pdgL" /locus_tag="STM1599" /note="D-ala-D-ala digestion in peptidoglycan; D-alanyl-D-alanine dipeptidase PcgL precursor (gi|4585342)" /codon_start=1 /transl_table=11 /product="Periplasmic dipeptidase" /protein_id="NP_460558.1" /db_xref="GeneID:1253117" /translation="MVKCVSSFLLFSLLSVQAMSAENHIDLHQPKDFVDITTVAPDVQ VDMRYFSSHNFIGRPIKGYNAPVCLLTRPAANAVKQVADRLRPFGLTLKIYDCYRPQS AVNDFIAWAKDPSQNQMKNEFYPQVEKNRLFEEGYLAARSGHSRGSTLDLTIVPLDSK IPIYDPGRPLVNCTASAAQRSPDNSLDFGTGFDCFSPLSHPDNVILTAQQRANRLLLQ TLMRDAGFTPLDTEWWHFSLTHEPYPNTWFDFPVKQRP" misc_feature complement(1689963..1690628) /gene="pdgL" /locus_tag="STM1599" /note="D-Ala-D-Ala dipeptidase VanX; Region: D-Ala-D-Ala_dipeptidase_VanX; cd14817" /db_xref="CDD:350616" regulatory complement(1690720..1690725) /regulatory_class="ribosome_binding_site" /gene="pdgL" /locus_tag="STM1599" /note="putative RBS for pdgL; RegulonDB:STMS1H001800" gene complement(1690977..1691211) /locus_tag="STM1600" /db_xref="GeneID:1253118" CDS complement(1690977..1691207) /locus_tag="STM1600" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_448018.1" /db_xref="GeneID:1253118" /translation="MAMTSRPNYLGSRGILCVCTTAVNRNFSALSPTIDVFLTNCLPD YIVVLSLAKQCYLVMEGDNNCTTDYQMTFLVR" regulatory complement(1691206..1691211) /regulatory_class="ribosome_binding_site" /locus_tag="STM1600" /note="putative RBS for STM1600; RegulonDB:STMS1H001801" gene complement(1691240..1691646) /gene="ugtL" /locus_tag="STM1601" /db_xref="GeneID:1253119" CDS complement(1691240..1691638) /gene="ugtL" /locus_tag="STM1601" /note="homology with chitinase from Schizosaccharomyces; putative membrane protein UgtL (gi|4585341)" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460560.1" /db_xref="GeneID:1253119" /translation="MKKSDGEIHEKTASWGILQSEWLRKCGRLLLLLLYRFVIGWAFF QLLAMIVAGIFLLGILLFHPIIFVQTIAITEKLNHASLDLWHILKLCLWHYGIIAGFI FMAECTLSKSIRQVQRLSKKFGAQDVSSRP" regulatory complement(1691641..1691646) /regulatory_class="ribosome_binding_site" /gene="ugtL" /locus_tag="STM1601" /note="putative RBS for ugtL; RegulonDB:STMS1H001802" gene 1692171..1693125 /gene="sifB" /locus_tag="STM1602" /db_xref="GeneID:1253120" regulatory 1692171..1692176 /regulatory_class="ribosome_binding_site" /gene="sifB" /locus_tag="STM1602" /note="putative RBS for sifB; RegulonDB:STMS1H001803" CDS 1692175..1693125 /gene="sifB" /locus_tag="STM1602" /note="secreted effector SifB (gi|8927437)" /codon_start=1 /transl_table=11 /product="Salmonella translocated effector: translocated by SPI-2" /protein_id="NP_460561.1" /db_xref="GeneID:1253120" /translation="MPITIGRGFLKSEMFSQSAISQRSFFTLLWEKIKDFFCDTQRST ADQYIKELCDVASPPDAQRLFDLFCKLYELSSPSCRGNFHFQHYKDAECQYTNLCIKD GEDIPLCIMIRQDHYYYEIMNRTVLCVDTQSAHLKRYSDINIKASTYVCEPLCCLFPE RLQLSLSGGITFSVDLKNIEETLIAMAEKGNLCDWKEQERKAAISSRINLGIAQAGVT AIDDAIKNKIAAKVIENTNLKNAAFEPNYAQSSVTQIVYSCLFKNEILMNMLEESSSH GLLCLNELTEYVALQVHNSLFSEDLSSLVETTKNEAHHQS" misc_feature 1692175..1693122 /gene="sifB" /locus_tag="STM1602" /note="type III secretion system effector SifB; Region: sifB; PRK09499" /db_xref="CDD:137339" gene 1693388..1693629 /gene="yncJ" /locus_tag="STM1603" /db_xref="GeneID:1253121" regulatory 1693388..1693393 /regulatory_class="ribosome_binding_site" /gene="yncJ" /locus_tag="STM1603" /note="putative RBS for yncJ; RegulonDB:STMS1H001804" CDS 1693399..1693629 /gene="yncJ" /locus_tag="STM1603" /note="similar to E. coli orf, hypothetical protein (AAC74518.1); Blastp hit to AAC74518.1 (76 aa), 76% identity in aa 1 - 73" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460562.1" /db_xref="GeneID:1253121" /translation="MLTKTLSVVLLTCALFSGQLLAKQQDHAFVWFATGGHQLRHEAD SDELRAAAEESAEGLREHHNWQKSRKPESYFR" misc_feature 1693399..1693626 /gene="yncJ" /locus_tag="STM1603" /note="Protein of unknown function (DUF2554); Region: DUF2554; pfam10829" /db_xref="CDD:313921" gene complement(1693630..1695612) /gene="ydcP" /locus_tag="STM1604" /db_xref="GeneID:1253122" CDS complement(1693630..1695594) /gene="ydcP" /locus_tag="STM1604" /EC_number="3.4.-.-" /note="similar to E. coli putative collagenase (AAC74517.1); Blastp hit to AAC74517.1 (667 aa), 92% identity in aa 20 - 667" /codon_start=1 /transl_table=11 /product="putative collagenase" /protein_id="NP_460563.1" /db_xref="GeneID:1253122" /translation="MRQQPHYLELLSPARDAAIAREAILHGADAVYIGGPGFGARHNA SNSLRDIADLVPFAHRYGARIFVTLNTILHDDELEPAQRLITDLYNTGVDALIVQDMG ILELDIPPIELHASTQCDIRSVEKAKFLADVGFSQIVLARELNLSQIAAIHQATDATI EFFIHGALCVAYSGQCYISHAQTGRSANRGDCSQACRLPYTLKDDQGRVVSYEKHLLS MKDNDQTANLGALIDAGVRSFKIEGRYKDMSYVKNITAHYRQMLDAIIEQRGDLARAS VGRTEHFFVPSTEKTFHRGSTDYFVNARKGDIGAFDSPKFIGLPVGEVLNVAKDYLDV EATEPLANGDGLNVLIKREVVGFRANTVEKTGHNRYRVWPNDMPADLHKVRPHHPLNR NLDHNWQQALTKTSSERRVAVDIMLGGWQEQLILTLTSEDGVCITHTLDGVFEEANNS EKALNNLKAGLAKLGQTPYYARDMQVTLPAALFVPNSLLNQFRREAIDMLDAARLAHY QRGRRKPVAQPAPVYPQTHLSFLANVYNHKAREFYHRYGVQLIDAAYEAHQEKGEVPV MITKHCLRFAFNLCPKQAKGNIKSWKATPMQLVHGDEVLTLKFDCRPCEMHVIGKIKN HILKMPQPGSVVASVSPEALMKTLPKRRGV" misc_feature complement(1694674..1695570) /gene="ydcP" /locus_tag="STM1604" /note="23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family [Translation, ribosomal structure and biogenesis]; Region: RlhA; COG0826" /db_xref="CDD:440588" misc_feature complement(1694080..1694265) /gene="ydcP" /locus_tag="STM1604" /note="Collagenase; Region: DUF3656; pfam12392" /db_xref="CDD:463557" regulatory complement(1695607..1695612) /regulatory_class="ribosome_binding_site" /gene="ydcP" /locus_tag="STM1604" /note="putative RBS for ydcP; RegulonDB:STMS1H001805" gene complement(1695673..1696220) /gene="ydcN" /locus_tag="STM1605" /db_xref="GeneID:1253123" CDS complement(1695673..1696209) /gene="ydcN" /locus_tag="STM1605" /note="similar to E. coli orf, hypothetical protein (AAC74516.1); Blastp hit to AAC74516.1 (178 aa), 72% identity in aa 1 - 177; putative repressor" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_460564.1" /db_xref="GeneID:1253123" /translation="MDNLTHYLATTLRTLRHQRGWSLSRLAEISGVSKAMLGQIERNE SSPTVATLWKIATGLNVPFSVFISPPQAEFPPTFDPQQQAMVITPLFPWDPELCFDYF SLLLAPGTVSESTPHKAGVIEHVVVIQGRLDMCTGGVWQTIDAGKGLRFAGDTAHTYR NSSDQTVHFHSLIHYPRD" misc_feature complement(1695961..1696209) /gene="ydcN" /locus_tag="STM1605" /note="Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Region: HipB; COG1396" /db_xref="CDD:441006" misc_feature complement(1695688..1695957) /gene="ydcN" /locus_tag="STM1605" /note="XRE (Xenobiotic Response Element) family transcriptional regulators, C-terminal cupin domain; Region: cupin_XRE_C; cd02209" /db_xref="CDD:380339" misc_feature complement(order(1695697..1695699,1695733..1695735, 1695739..1695741,1695841..1695843,1695859..1695861, 1695868..1695870,1695898..1695900,1695904..1695906, 1695949..1695951)) /gene="ydcN" /locus_tag="STM1605" /note="putative active site [active]" /db_xref="CDD:380339" regulatory complement(1696215..1696220) /regulatory_class="ribosome_binding_site" /gene="ydcN" /locus_tag="STM1605" /note="putative RBS for ydcN; RegulonDB:STMS1H001806" gene 1696291..1697478 /locus_tag="STM1606" /db_xref="GeneID:1253124" regulatory 1696291..1696296 /regulatory_class="ribosome_binding_site" /locus_tag="STM1606" /note="putative RBS for STM1606; RegulonDB:STMS1H001807" CDS 1696300..1697478 /locus_tag="STM1606" /note="similar to E. coli putative membrane transport protein (AAC74515.1); Blastp hit to AAC74515.1 (478 aa), 76% identity in aa 88 - 469" /codon_start=1 /transl_table=11 /product="putative benzoate membrane transport protein" /protein_id="NP_460565.1" /db_xref="GeneID:1253124" /translation="MRLLSLPLPTVLSGLVAVLVGYASSAAIIWQAALAAGATPAEIA GWMTALGIAMGISTLTLTLWYRAPVLTAWSTPGAALLVTGLQGLSLPDAVGIFIVANA LIVLCGVTGLFARLMRIIPHSLAAAMLAGILLRFGLQAFGTLNGEFVMCGGMLLAWLL FKVFAPRYAVIAAMVMGITVALIQGKVAMSGIHFAPVWPTFVPPHFSFAQSLSVAVPL FLVTMASQNAPGVATMKASGYQLPVSPLMIFTGLLALLLSPFGVYSICIAAITAAICQ SPDAHPDPTRRWLAAAAAGVFYLLAGWFGGSITALMVALPVSWVQMLAGLALLSTISG SLYQALTHESERDAAVIAFLVTASGLTLMGIGSAFWGLIAGGIGYAVLTRTRRPSLSG " misc_feature 1696300..1697463 /locus_tag="STM1606" /note="Predicted benzoate:H+ symporter BenE [Secondary metabolites biosynthesis, transport and catabolism]; Region: BenE; COG3135" /db_xref="CDD:442369" gene complement(1697532..1698213) /locus_tag="STM1607" /db_xref="GeneID:1253125" CDS complement(1697532..1698200) /locus_tag="STM1607" /note="similar to E. coli orf, hypothetical protein (AAC74513.1); Blastp hit to AAC74513.1 (222 aa), 84% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460566.1" /db_xref="GeneID:1253125" /translation="MRTHTLFKVAVLTGLLALSGCASKVTQPDKYSGFLKNYSDLQET TSATGKPVLRWVDPHFNDSNYDSIVYNPITYYPVPKPTTQVGQQVLDKLLAYTNTKVK SAIEQRKPLVTTPGPRSLIFRGAITGVDTSKEGLQFYEVIPVALIVAGTQMATGHRTM DTHLYFEGELIDAATNKPVVKVVRQGEGKDLSNSSTPMAFETLKQVVDDMATDTSMFD VNKK" misc_feature complement(1697562..1698113) /locus_tag="STM1607" /note="Protein of unknown function (DUF3313); Region: DUF3313; pfam11769" /db_xref="CDD:432060" regulatory complement(1698208..1698213) /regulatory_class="ribosome_binding_site" /locus_tag="STM1607" /note="putative RBS for STM1607; RegulonDB:STMS1H001808" gene complement(1698356..1698962) /gene="tehB" /locus_tag="STM1608" /db_xref="GeneID:1253126" CDS complement(1698356..1698952) /gene="tehB" /locus_tag="STM1608" /note="tellurite resistance; similar to E. coli tellurite resistance (AAC74512.1); Blastp hit to AAC74512.1 (197 aa), 84% identity in aa 1 - 196" /codon_start=1 /transl_table=11 /product="putative methyltransferase" /protein_id="NP_460567.1" /db_xref="GeneID:1253126" /translation="MTVRDENYFTEKYGLTRTHSDVLAAAKVVAPGRTLDLGCGNGRN SLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILST VVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFPCTVGFPFAFKEGELRRYY EGWDMLKYNEDVGELHRTDENGNRIKLRFATMLARKTA" misc_feature complement(1698362..1698952) /gene="tehB" /locus_tag="STM1608" /note="tellurite resistance methyltransferase TehB; Region: PRK11207" /db_xref="CDD:183040" gene complement(1698939..1699952) /gene="tehA" /locus_tag="STM1609" /db_xref="GeneID:1253127" CDS complement(1698939..1699952) /gene="tehA" /locus_tag="STM1609" /note="TDT family; similar to E. coli tellurite resistance (AAC74511.1); Blastp hit to AAC74511.1 (330 aa), 88% identity in aa 2 - 329" /codon_start=1 /transl_table=11 /product="K+-tellurite ethidium and proflavin transport protein" /protein_id="NP_460568.1" /db_xref="GeneID:1253127" /translation="MRNHKQSDRVLNLPAGYFGIVLGTIGMGFAWRYASQIWGISHWP GDIMVILAMIIWALLTLAFLSRLVRFPHSVMAEVRHPVMSSFVSLFPATTMLVAIGFV PWYRPLAVALFSVGVVIQLAYAAWQTAGLWRGAHPEEATTPGLYLPTVANNFISAMAC GALGYNDAGLVFLGAGVFSWLSLEPVILQRLRSCGELPAVLRTSLGIQLAPALVACSA WLSVNGGEGDTLAKMLFGYGLLQLLFMLRLMPWYLSQPFNASFWSFSFGVSALATTGL HLGHGSESGLFHILAVPLFIFTNAIIALLLVRTFLLLVQGTLLIRTERAALLKTEEKN DRS" misc_feature complement(1698969..1699940) /gene="tehA" /locus_tag="STM1609" /note="potassium-tellurite ethidium and proflavin transporter; Provisional; Region: PRK10764" /db_xref="CDD:236756" misc_feature complement(1699155..1699157) /gene="tehA" /locus_tag="STM1609" /note="gating phenylalanine in ion channel; other site" /db_xref="CDD:187764" regulatory complement(1698957..1698962) /regulatory_class="ribosome_binding_site" /gene="tehB" /locus_tag="STM1608" /note="putative RBS for tehB; RegulonDB:STMS1H001809" gene 1700046..1701039 /gene="ydcK" /locus_tag="STM1610" /db_xref="GeneID:1253128" regulatory 1700046..1700051 /regulatory_class="ribosome_binding_site" /gene="ydcK" /locus_tag="STM1610" /note="putative RBS for ydcK; RegulonDB:STMS1H001810" CDS 1700059..1701039 /gene="ydcK" /locus_tag="STM1610" /note="involved in lipopolysaccharide biosynthesis; similar to E. coli orf, hypothetical protein (AAC74510.1); Blastp hit to AAC74510.1 (326 aa), 66% identity in aa 1 - 326" /codon_start=1 /transl_table=11 /product="putative nucleoside-diphosphate-sugar pyrophosphorylases" /protein_id="NP_460569.1" /db_xref="GeneID:1253128" /translation="MTKYRLSEEPRAFTYQVDGEKKSVLLRQVIAVTDFNDVKAGTSG GWVDAGNVLSQQGDCWIYDENAMAFAGTEITGNARITQPCSLYNNVRIGDNVWIDRSD ISDGARISDNVTIQSSSVRGECAIYGDARVLNQSEILAVQGLTHEHAQILQIYDRATV NHSRIVHQVQLYGDATITLAFIEHRAEVFDFALIEGNKDNNVWICDCAKVYGHARVIA GTEEDAIPTLRYSSQVAEHALIEGNCVLKHHVLVGGHAEIRGGPILLDDRVLIEGQAC IQGEILIEHQVEISGRATVIAFDGNTIHLRGPKVINGEDRITRTPLVGSL" misc_feature 1700059..1701036 /gene="ydcK" /locus_tag="STM1610" /note="YdcK family protein; Region: YdcK_fam; NF040481" /db_xref="CDD:439707" gene complement(1701036..1701587) /gene="rimL" /locus_tag="STM1611" /db_xref="GeneID:1253129" CDS complement(1701036..1701575) /gene="rimL" /locus_tag="STM1611" /EC_number="2.3.1.-" /note="modifies N-terminal serine of 50S ribosomal subunit protein L7/L12; similar to E. coli acetylation of N-terminal serine of 30S ribosomal subunit protein L7; acetyl transferase (AAC74509.1); Blastp hit to AAC74509.1 (179 aa), 67% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="acetyl transferase" /protein_id="NP_460570.1" /db_xref="GeneID:1253129" /translation="MVEIIPVSTTLELRAADESHVPALHQLVLKNKAWLQQSLDWPQY VTSQEETRKHVQGNILLHQRGYAKMYLIFCQNEMAGVLSFNAIEPINKAAYIGYWLDE SFQGQGIMSQSLQALMTHYARRGDIRRFVIKCRVDNQASNAVARRNHFTLEGCMKQAE YLNGDYHDVNMYARIIDAD" misc_feature complement(1701039..1701575) /gene="rimL" /locus_tag="STM1611" /note="50S ribosomal protein L7/L12-serine acetyltransferase; Region: PRK10151" /db_xref="CDD:182270" misc_feature complement(order(1701243..1701248,1701276..1701281)) /gene="rimL" /locus_tag="STM1611" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" regulatory complement(1701582..1701587) /regulatory_class="ribosome_binding_site" /gene="rimL" /locus_tag="STM1611" /note="putative RBS for rimL; RegulonDB:STMS1H001811" gene 1701780..1702910 /locus_tag="STM1612" /db_xref="GeneID:1253130" regulatory 1701780..1701785 /regulatory_class="ribosome_binding_site" /locus_tag="STM1612" /note="putative RBS for STM1612; RegulonDB:STMS1H001812" CDS 1701792..1702910 /locus_tag="STM1612" /note="similar to E. coli putative lyase/synthase (AAC77261.1); Blastp hit to AAC77261.1 (383 aa), 84% identity in aa 11 - 382" /codon_start=1 /transl_table=11 /product="putative cellulase protein" /protein_id="NP_460571.1" /db_xref="GeneID:1253130" /translation="MTFSVQETLFSLLRLNGISGHENSIANVMQHAFEQQAKDVWRDR LGNVVARYGSDKPDALRLMIFAHMDEVGFMVRKIEPSGFLRFERVGGPAQITMPGSIV TLAGRSGDIMGCIGIKAYHFAKGDERTQPPALDKLWIDIGAKDKADAERMGIQVGTPV TLYNPPHCLGNDLVCSKALDDRLGCTALLGVAEALASTPLDIAVFLVASVQEEFNIRG IIPVLRRVRPDLAIGIDITPSCDTPDLQDYSDVRVNHGVGITCLNYHGRGTLAGLITP PRLLRMLETTAHENNIPVQREVAPGVITETGYIQVELDGIPCASLSIPCRYTHSPAEV ASLRDLADCIRLLTALANMSPEQFPIEPETGATQEARP" misc_feature 1701810..1702844 /locus_tag="STM1612" /note="M42 Peptidase, endoglucanases; Region: M42_Frv; cd05656" /db_xref="CDD:349906" misc_feature order(1701846..1701854,1701867..1701869,1701879..1701881, 1701915..1701920,1701927..1701929,1702011..1702019, 1702038..1702040,1702050..1702052,1702074..1702076, 1702083..1702094,1702122..1702127,1702131..1702133, 1702203..1702205,1702209..1702217,1702257..1702262, 1702290..1702292,1702296..1702298,1702308..1702310, 1702314..1702316,1702440..1702442,1702449..1702454, 1702461..1702466,1702548..1702556,1702572..1702574, 1702602..1702604,1702641..1702643,1702683..1702685, 1702719..1702724,1702767..1702772,1702779..1702781, 1702785..1702787,1702791..1702793) /locus_tag="STM1612" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:349906" misc_feature order(1701990..1701992,1702329..1702331,1702425..1702430, 1702437..1702439,1702494..1702505,1702686..1702688, 1702695..1702700,1702773..1702778) /locus_tag="STM1612" /note="active site" /db_xref="CDD:349906" gene 1702901..1703188 /locus_tag="STM1613" /db_xref="GeneID:1253131" regulatory 1702901..1702906 /regulatory_class="ribosome_binding_site" /locus_tag="STM1613" /note="putative RBS for STM1613; RegulonDB:STMS1H001813" CDS 1702907..1703188 /locus_tag="STM1613" /note="similar to E. coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); Blastp hit to AAC75154.1 (94 aa), 34% identity in aa 1 - 92" /codon_start=1 /transl_table=11 /product="putative PTS system, enzymeIIB component" /protein_id="NP_460572.1" /db_xref="GeneID:1253131" /translation="MMKKILVACGTGMSTSTMIAQKLQDFLAEQGIAATTAQCCLNEI PLNCNGMDLIVTSMRTHSDYGIPTLNGAALLTGINDDALKQEIKALLTQ" misc_feature 1702913..1703179 /locus_tag="STM1613" /note="subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC...; Region: PTS_IIB_galactitol; cd05566" /db_xref="CDD:99908" misc_feature order(1702931..1702942,1702946..1702954) /locus_tag="STM1613" /note="P-loop; other site" /db_xref="CDD:99908" misc_feature order(1702931..1702933,1702937..1702942,1702949..1702954) /locus_tag="STM1613" /note="active site" /db_xref="CDD:99908" misc_feature 1702931..1702933 /locus_tag="STM1613" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99908" gene 1703188..1704512 /locus_tag="STM1614" /db_xref="GeneID:1253132" regulatory 1703188..1703193 /regulatory_class="ribosome_binding_site" /locus_tag="STM1614" /note="putative RBS for STM1614; RegulonDB:STMS1H001814" CDS 1703199..1704512 /locus_tag="STM1614" /note="similar to E. coli putative PTS system enzyme IIC component (AAC77260.1); Blastp hit to AAC77260.1 (437 aa), 94% identity in aa 1 - 437" /codon_start=1 /transl_table=11 /product="putative PTS system enzyme IIC component" /protein_id="NP_460573.1" /db_xref="GeneID:1253132" /translation="MFDYILSLGGTVFVPIIMIIIGLIFRIPWLQAVKAGVTVGIGFV GMGLVIVMAIDSLSPPIKVMIERFGLTLHVFDVGAGPASGVGYATAIGAMIIPVIFLL NVGMLVTRLTKTMNVDIYNYWHYAITGTVVQLMTGSLIYGVLGAICHAALSLKMADWT AKRVQNIVGLEGISIPQGYGSSSVPLFVLLDAIYEKIPFMKGRNIDAQEIQKRYGMVG DPVIIGVVLGLIFGLAAGEGFKGCATLMITVAAIMVLFPRMIRLIVEGLMPISDGARK FFQKHFKGREVFIGLDTAVTLGHPTTIAVGLLLIPIMLILASILPGNKVLPLADLPVA PFFICMATVIHRGDLIRTLLSGIIVMITVLLIATQFAPYFTDMALKGGFSFAAENAQI TALSVGNMFGWSISELMSLGMIGVVIVVGIVASIILVLRKRELPE" misc_feature 1703211..1704428 /locus_tag="STM1614" /note="PTS sugar transporter subunit IIC; Region: PRK12997; cl04451" /db_xref="CDD:471037" gene 1704511..1705332 /locus_tag="STM1615" /db_xref="GeneID:1253133" regulatory 1704511..1704516 /regulatory_class="ribosome_binding_site" /locus_tag="STM1615" /note="putative RBS for STM1615; RegulonDB:STMS1H001815" CDS 1704526..1705332 /locus_tag="STM1615" /note="similar to E. coli putative nucleoside triphosphatase (AAC77259.1); Blastp hit to AAC77259.1 (268 aa), 92% identity in aa 1 - 268" /codon_start=1 /transl_table=11 /product="putative nucleoside triphosphatase" /protein_id="NP_460574.1" /db_xref="GeneID:1253133" /translation="MSWLKEVIGTEKAVIAMCHLRALPGDPGFDTRKGMNWVIDRAHD DLMALQNGGVDAVMFSNEFSLPYLTKVRPETTAAMARIIGQLMSEIRVPFGVNVLWDP VASFDLAMATDAKFIREIFTGAYASDFGVWDTNVGETIRHQHRIGAGHVKTLFNIVPE AAVYLGNRDVCSIAKSTVFNNNPDALCVSGLTAGARTDSAILKRVKETVPDTVVLANT GVCLENVEEQLCIADGCVTATTFKKDGVFANFVDQARVAKFMEKVRHIRQ" misc_feature 1704556..1705329 /locus_tag="STM1615" /note="membrane complex biogenesis protein, BtpA family; Region: thylakoid_BtpA; TIGR00259" /db_xref="CDD:129361" gene 1705448..1705901 /locus_tag="STM1616" /db_xref="GeneID:1253134" regulatory 1705448..1705453 /regulatory_class="ribosome_binding_site" /locus_tag="STM1616" /note="putative RBS for STM1616; RegulonDB:STMS1H001816" CDS 1705464..1705901 /locus_tag="STM1616" /note="similar to E. coli putative PTS system enzyme II A component (AAC77258.1); Blastp hit to AAC77258.1 (143 aa), 73% identity in aa 1 - 139" /codon_start=1 /transl_table=11 /product="putative sugar specific PTS enzyme II" /protein_id="NP_460575.1" /db_xref="GeneID:1253134" /translation="MINDVKWVQAQRHASDWRHALDIAVRPLITFGAAAPCYLDGIIE NTLKWGPYYLIAPGIALPHARPEQGANHNQISVTTLSTPVAFGNADCDPIWLLLCASA TDAEAHIRTIQRISQWLDSPESVAMLQDAPNDAALFAQLTALR" misc_feature 1705467..1705886 /locus_tag="STM1616" /note="Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; Region: PTS_EIIA_2; pfam00359" /db_xref="CDD:459780" gene 1705901..1706545 /locus_tag="STM1617" /db_xref="GeneID:1253135" regulatory 1705901..1705906 /regulatory_class="ribosome_binding_site" /locus_tag="STM1617" /note="putative RBS for STM1617; RegulonDB:STMS1H001817" CDS 1705913..1706545 /locus_tag="STM1617" /EC_number="5.1.3.-" /note="similar to E. coli putative epimerase (AAC77257.1); Blastp hit to AAC77257.1 (210 aa), 65% identity in aa 1 - 210" /codon_start=1 /transl_table=11 /product="putative ribulose-phosphate 3-epimerase" /protein_id="NP_460576.1" /db_xref="GeneID:1253135" /translation="MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNIT FGMKTIQAVAQYTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFIHAESVQNPPEILADI RAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQGREH FPAAECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFTAL" misc_feature 1705913..1706542 /locus_tag="STM1617" /note="ribulose-phosphate 3 epimerase family protein; Region: PRK08005" /db_xref="CDD:169179" misc_feature order(1705928..1705930,1705934..1705936,1706009..1706011, 1706108..1706110,1706327..1706332,1706336..1706341, 1706417..1706419,1706423..1706425,1706483..1706488) /locus_tag="STM1617" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238244" misc_feature order(1705949..1705951,1705958..1705960,1706018..1706020, 1706024..1706029,1706033..1706035,1706039..1706050, 1706117..1706119,1706129..1706131,1706192..1706194, 1706198..1706203,1706255..1706257,1706264..1706266, 1706270..1706272,1706282..1706284,1706324..1706326, 1706351..1706353,1706357..1706359,1706369..1706371) /locus_tag="STM1617" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:238244" misc_feature order(1706003..1706005,1706009..1706011,1706102..1706104, 1706417..1706419) /locus_tag="STM1617" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238244" gene 1706545..1707352 /locus_tag="STM1618" /db_xref="GeneID:1253136" regulatory 1706545..1706550 /regulatory_class="ribosome_binding_site" /locus_tag="STM1618" /note="putative RBS for STM1618; RegulonDB:STMS1H001818" CDS 1706561..1707352 /locus_tag="STM1618" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC77256.1); Blastp hit to AAC77256.1 (260 aa), 89% identity in aa 1 - 255" /codon_start=1 /transl_table=11 /product="putative DeoR family transcriptional repressor of sgc operon" /protein_id="NP_460577.1" /db_xref="GeneID:1253136" /translation="MSQQRPDRIKQMLHYLWQHRHLSTQQAIELFGYAEATVRRDFHY IASRYPGMVRGHGCIDFDDSTEDKEYVFDVKRTLQSEAKREIAALARTFIKDGDCFFL DSGSTCLELAKCLVDAKVKVICNDIKIANELGGFPHVESYIIGGLIRPGYFSVGESLA LEMINAFAVERAFISCDALSIETGITNATMFEVGVKTRIIQRSREVILMADHSKFDTV EPHAVATLSCITTILSDSALPSAIARRYQQAGCRLIMSDPSSGAR" misc_feature 1706561..1707322 /locus_tag="STM1618" /note="DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]; Region: GlpR; COG1349" /db_xref="CDD:440960" gene 1707344..1707789 /locus_tag="STM1619" /db_xref="GeneID:1253137" regulatory 1707344..1707349 /regulatory_class="ribosome_binding_site" /locus_tag="STM1619" /note="putative RBS for STM1619; RegulonDB:STMS1H001819" CDS 1707352..1707789 /locus_tag="STM1619" /codon_start=1 /transl_table=11 /product="cryptic aminoglycoside resistance gene" /protein_id="NP_460578.1" /db_xref="GeneID:1253137" /translation="MDIRQMNRTHLDHWRGLRKQLWPGHPDDAHLADGEEILQADHLA SFIAMADGVAIGFADASIRHDYVNGCDSSPVVFLEGIFVLPSFRQRGVAKQLIAAVQR WGTNKGCREMASDTSPENTISQKVHQALGFEETERVIFYRKRC" misc_feature 1707352..1707786 /locus_tag="STM1619" /note="AAC(6')-Iy/Iaa family aminoglycoside 6'-N-acetyltransferase; Region: AAC_6p_Salmo; NF000140" /db_xref="CDD:411079" gene complement(1707836..1709043) /locus_tag="STM1620" /db_xref="GeneID:1253138" CDS complement(1707836..1709038) /locus_tag="STM1620" /note="similar to E. coli L-lactate dehydrogenase (AAC76629.1); Blastp hit to AAC76629.1 (396 aa), 38% identity in aa 212 - 384, 33% identity in aa 22 - 175" /codon_start=1 /transl_table=11 /product="putative oxidase" /protein_id="NP_460579.1" /db_xref="GeneID:1253138" /translation="MKTHHLIRVVASLAMLATSGLAYAEEYKASTDEKAIKMTNVASL EARVQAKMEKGAFGYIRGGAEDENNLRSNTESFDKKYIMPRVLQGIELKEIDLSTQLL GIPLKTPIIQAPMAAQGLAHASGELATAKGMAQVGSIFSLSTYGNKTIEEVANVSGKN PFFFQLYMSKNNQFNEFILAQAVKHGAKAIILTVDSPVGGYREEDIKNNFQFPLGFAN LEMFARKNDDGSKTGKGAGISEIYAQAKQAFTPEDIAYVHRISGLPVIVKGIQSPEDA EIAIQAGAAGIWVSNHGGRQLDSGPSSFDMLPAIAKVVNKRVPVIFDSGVRRGSHIFK ALASGADIVAVGRPVLYGLNLGGAQGVASVIEQLNKELTINMMLGGARNIEQVKTTRL LTEKDLPQ" misc_feature complement(1707863..1708939) /locus_tag="STM1620" /note="L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes...; Region: LOX_like_FMN; cd04737" /db_xref="CDD:240088" misc_feature complement(order(1707881..1707883,1707905..1707910, 1707917..1707919,1708037..1708039,1708046..1708051, 1708124..1708126,1708133..1708147,1708214..1708219, 1708223..1708225,1708232..1708237,1708283..1708294, 1708448..1708450,1708778..1708786,1708793..1708798, 1708808..1708810,1708814..1708816,1708823..1708828, 1708835..1708837,1708910..1708912)) /locus_tag="STM1620" /note="teramer interface [polypeptide binding]; other site" /db_xref="CDD:240088" misc_feature complement(order(1707998..1708000,1708154..1708156, 1708163..1708165,1708235..1708237,1708433..1708435, 1708454..1708456,1708538..1708540,1708610..1708612, 1708862..1708864)) /locus_tag="STM1620" /note="active site" /db_xref="CDD:240088" misc_feature complement(order(1707998..1708003,1708058..1708060, 1708064..1708066,1708070..1708072,1708160..1708165, 1708169..1708171,1708235..1708237,1708460..1708462, 1708544..1708546,1708691..1708693,1708697..1708699)) /locus_tag="STM1620" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:240088" misc_feature complement(order(1708163..1708165,1708433..1708435, 1708538..1708540)) /locus_tag="STM1620" /note="catalytic residues [active]" /db_xref="CDD:240088" regulatory complement(1709038..1709043) /regulatory_class="ribosome_binding_site" /locus_tag="STM1620" /note="putative RBS for STM1620; RegulonDB:STMS1H001820" gene complement(1709050..1709625) /locus_tag="STM1621" /db_xref="GeneID:1253139" CDS complement(1709050..1709625) /locus_tag="STM1621" /note="similar to E. coli orf, hypothetical protein (AAC74140.1); Blastp hit to AAC74140.1 (191 aa), 33% identity in aa 1 - 190" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460580.1" /db_xref="GeneID:1253139" /translation="MNIMKKSFLGALLSLGLLSAAHADVYKFDNTHTNAVFNIDHFQT STNHGGFYAISGELKYQPEKQVAEMRVTIPVSALNTGVDAFDNHIRSSDILDAEKYPE MVFKSTKWHFEDNKPVSIDGLLTMKGVTKPVTLTTTKFGCYMSPIFKAQVCGGDFVTQ IDRTQWGIDYLVDMGMTKVVDIKIQAEAVKQ" misc_feature complement(1709053..1709616) /locus_tag="STM1621" /note="Polyisoprenoid-binding periplasmic protein YceI [General function prediction only]; Region: YceI; COG2353" /db_xref="CDD:441920" gene complement(1709821..1711494) /gene="ydcG" /locus_tag="STM1622" /db_xref="GeneID:1253140" CDS complement(1709821..1711476) /gene="ydcG" /locus_tag="STM1622" /note="similar to E. coli putative glycoprotein (AAC74506.1); Blastp hit to AAC74506.1 (551 aa), 89% identity in aa 1 - 550" /codon_start=1 /transl_table=11 /product="putative periplasmic glucans biosynthesis protein" /protein_id="NP_460581.1" /db_xref="GeneID:1253140" /translation="MNRRRFIKGSMAMAAVCGSSGIASLFSQAAFAAESDIADGKIVR FDFAGLQSMAQALAKKPWGGAPGPLPDTLANLTPQAYNSIQYDAAHSLWNGVANRQLD IQFFHVGMGFRRRVRMFSVDTTTHLAREIHFRPELFKYNDAGVDTTQLEGQSDLGFAG FRVFKAPELARRDVVSFLGASYFRAVDDTYQYGLSARGLAIDTYTDGQEEFPDFTAFW FDTAKPGDTTFTVYALLDSASVTGAYKFVIHCEKSQVIMDVENHLYARKDIKQLGIAP MTSMFSCGNNERRVCDTIHPQIHDSDRLAMWRGNGEWICRPLNNPQKLQFNAYMDDNP KGFGLLQLDRDFSHYQDVMGWYNKRPSLWVEPRNKWGKGAVSLMEIPTTGETLDNVVC FWQPEKAIKAGDTLAFNYRLYWSAQPPVQSPLARVMATRTGMGGFPEGWAPGEHYPDK WARRFAIDFVGGDLKAAAPKGIEPVITLSSGEAKQIEILYVEPFDGYRIQFDWYPTSD STAPVDMRMFLRCQGEAISETWLYQYFPPAPDKRRYVDDRIMR" misc_feature complement(1709887..1711344) /gene="ydcG" /locus_tag="STM1622" /note="glucan biosynthesis protein D; Provisional; Region: mdoD; PRK13273" /db_xref="CDD:237327" regulatory complement(1711489..1711494) /regulatory_class="ribosome_binding_site" /gene="ydcG" /locus_tag="STM1622" /note="putative RBS for ydcG; RegulonDB:STMS1H001821" gene complement(1711696..1713211) /locus_tag="STM1623" /db_xref="GeneID:1253141" CDS complement(1711696..1713204) /locus_tag="STM1623" /codon_start=1 /transl_table=11 /product="putative carboxylesterase" /protein_id="NP_460582.1" /db_xref="GeneID:1253141" /translation="MLNPSIPLVETRHGKIVGVVQEEIHIWRGIPYAAPPTGELRWRA PQPVTPWHDVRQADCFSCASWQDITWCRELGGGDPGNFSEDCLYLNVWAPAVRHEPLP VMVWLHGGGYTIGAGSLPPYDGQALAKRGAIVVTVNYRLGHLGFFAHPALEGEEAECI HNFALLDQIAALRWVQDNIAAFGGDTQNVTLFGESAGARSVLSLMASPLAKGLFHKAI IQSGYTLPDTPREVALKKGVALAEHLGLAHATAEQLRALPAETFWPLDAPFKIAPTPI SGDVVLPHPMLETFFAAKQHPIPVMIGSNSDEASVLAVFGVDIAGQIQKMRRERRVGL GLIRLLYPGVKGDEALGRQVCRDMVFTTLGYVVMQAQQRIGEPCWRYWFDYVAEAEHN TYANGACHGNEIPYVFDTLTRAEPTCHYVNENDLAFASQVADYWVNFARHASRTRDVL HGPVRWPASIRGRDRLLRIGLNKLAGFKVENRFMRARLALFKRVMKHHVSLE" misc_feature complement(1711720..1713204) /locus_tag="STM1623" /note="Carboxylesterase type B [Lipid transport and metabolism]; Region: PnbA; COG2272" /db_xref="CDD:441873" regulatory complement(1713206..1713211) /regulatory_class="ribosome_binding_site" /locus_tag="STM1623" /note="putative RBS for STM1623; RegulonDB:STMS1H001822" gene complement(1713253..1714612) /locus_tag="STM1624" /db_xref="GeneID:1253142" CDS complement(1713253..1714596) /locus_tag="STM1624" /note="similar to E. coli orf, hypothetical protein (AAC74505.1); Blastp hit to AAC74505.1 (447 aa), 87% identity in aa 1 - 447" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460583.1" /db_xref="GeneID:1253142" /translation="MANTITADEIREHFSQAMSAMYQQEVPQYGTLLELVADVNLAVL ENNPKLHEQLANADELARLNVERHGAIRVGTAEELSTLRRIFAIMGMYPVSYYDLSQA GVPVHSTAFRPIDEASLSRNPFRMFTSLLRLELIENAALRQRAAEILSQRDIFTSRCR QLLDEYDEQGGFSAAQAEEFVRETLETFRWHRQATVDEETYRSLHREHRLIADVVCFP GCHINHLTPRTLDIDRVQAMMPECGITPKILIEGPPRREVPILLRQTSFKALEEQVLF VDEKQGTHTARFGEIEQRGVALTPKGRRLYDELLHKAGTGKDNFTHQLHLREVFNAFP DSEFLLRQQGLAWFRYRLTPSGEAHRQAIHPGDDPQPLIERGWVIAQPITYEDFLPVS AAGIFQSNLGDETLARSHGNASRDAFEQALGCAVRDEFSLYQEAEERSKRRCGLL" misc_feature complement(1713658..1714575) /locus_tag="STM1624" /note="uncharacterized metal-dependent enzyme similar to Shigella flexneri YdcJ; Region: VOC_YdcJ_like; cd16348" /db_xref="CDD:319958" misc_feature complement(1713265..1713822) /locus_tag="STM1624" /note="Uncharacterized metalloenzyme YdcJ, glyoxalase superfamily [General function prediction only]; Region: YdcJ; COG5383" /db_xref="CDD:444147" regulatory complement(1714607..1714612) /regulatory_class="ribosome_binding_site" /locus_tag="STM1624" /note="putative RBS for STM1624; RegulonDB:STMS1H001823" gene 1714889..1715812 /gene="ydcI" /locus_tag="STM1625" /db_xref="GeneID:1253143" CDS 1714889..1715812 /gene="ydcI" /locus_tag="STM1625" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74504.1); Blastp hit to AAC74504.1 (354 aa), 83% identity in aa 48 - 353" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_460584.1" /db_xref="GeneID:1253143" /translation="MEKNGLFSQRIRLRHLHTFVAVAQQGTLGRAAETLNLSQPALSK TLNELEQLTGTRLFERGRLGAQLTVPGEQFLTHAVKVLDALNTAGQALNRKEDASADV VRVGALPTAALGILPAAIGRFHQQQKSTSLQVATMNNTMLLAGLKSGEIDLGIGRMSD PELMGGLNYELLFLESLKLVVRPGHPLLQETITLSRVMEWPVVVSPKGTVPRQNAEAL LQSQGCKMPAGCIETLSASLSRQLTVDYDYVWFVPSGAVKEDLRQATLVSLPVPTQSA GEPIGILTRVDIPLSTGAQMLIAAIRKSMPL" misc_feature 1714913..1715794 /gene="ydcI" /locus_tag="STM1625" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" misc_feature order(1715237..1715242,1715246..1715251,1715258..1715260, 1715270..1715272,1715276..1715296,1715576..1715593, 1715609..1715614,1715618..1715623) /gene="ydcI" /locus_tag="STM1625" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176126" gene complement(1715873..1717504) /gene="trg" /locus_tag="STM1626" /db_xref="GeneID:1253144" CDS complement(1715873..1717498) /gene="trg" /locus_tag="STM1626" /note="ribose and galactose sensor receptor; similar to E. coli methyl-accepting chemotaxis protein III, ribose sensor receptor (AAC74503.1); Blastp hit to AAC74503.1 (546 aa), 79% identity in aa 6 - 526" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein III" /protein_id="NP_460585.2" /db_xref="GeneID:1253144" /translation="MGNTFSMQASHKLGFLHHIRLVPLFSSILGGILLLFALSAGLAG YFLLQADRDQRDVTDEIQVRMGLSNSANHLRTARINMIHAGAASRIAEMDEMKANIAA AETRIKQSQDGFNAYMSRAVKTPADDALDNELNARYTAYINGLQPMLKFAKNGMFEAI INHENEQAKQLDAAYNHVLLKAIELRTERARLLSEQAYQRTRLGMMFMIGAFTLALVL TLMTFMVLRRTVIQPLQQSASRIERIAAGDLTMADEPTGRSEIGRLSHHLQQMQHALQ QTVGAVRQGAEEIYRGTSEITAGNTDLSSRTEQQAAAIEQTAASMEQLTATVKQNADN AHHASKLAEDASGKASRGGQMVSGVVQTMGNISTSSKKISEITAVINSIAFQTNILAL NAAVEAARAGEQGRGFAVVASEVRTLASRSAQAAKEIEGLIGASVSLIEQGSEEVIAA GSTMNEIVDAVKRVTDIMLDIAAASDEQSRGIVQVSQAISEMDRVTQQNASLVEEASA AAASLEEQAARLTQAVDAFRLHDTGATMRSSFL" misc_feature complement(1715912..1717453) /gene="trg" /locus_tag="STM1626" /note="Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cl46910" /db_xref="CDD:481250" misc_feature complement(order(1715993..1715995,1716002..1716007, 1716014..1716016,1716023..1716028,1716032..1716037, 1716044..1716049,1716053..1716058,1716065..1716067, 1716074..1716079,1716086..1716088,1716095..1716100, 1716107..1716112,1716116..1716121,1716128..1716130, 1716137..1716142,1716149..1716151,1716158..1716163, 1716200..1716205,1716212..1716217,1716221..1716226, 1716233..1716238,1716245..1716247,1716254..1716259, 1716266..1716268,1716275..1716277,1716287..1716289, 1716308..1716310,1716317..1716319,1716329..1716331, 1716338..1716343,1716350..1716352,1716359..1716361, 1716368..1716373,1716380..1716385,1716392..1716394, 1716401..1716406,1716410..1716412,1716422..1716427, 1716431..1716436,1716443..1716445,1716452..1716457, 1716464..1716469,1716476..1716478,1716485..1716490, 1716497..1716499,1716506..1716511,1716515..1716520, 1716527..1716529,1716536..1716541,1716548..1716553)) /gene="trg" /locus_tag="STM1626" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature complement(1716242..1716343) /gene="trg" /locus_tag="STM1626" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" regulatory complement(1717499..1717504) /regulatory_class="ribosome_binding_site" /gene="trg" /locus_tag="STM1626" /note="putative RBS for trg; RegulonDB:STMS1H001824" gene complement(1717667..1718798) /locus_tag="STM1627" /db_xref="GeneID:1253145" CDS complement(1717667..1718785) /locus_tag="STM1627" /EC_number="1.1.1.1" /EC_number="1.1.1.284" /note="similar to E. coli alcohol dehydrogenase class III; formaldehyde dehydrogenase, glutathione-dependent (AAC73459.1); Blastp hit to AAC73459.1 (369 aa), 80% identity in aa 1 - 369" /codon_start=1 /transl_table=11 /product="alcohol dehydrogenase class III" /protein_id="NP_460586.1" /db_xref="GeneID:1253145" /translation="MKSRAAVAFGPGQPLKIVEIDVAPPKKGEVLVKITHTGVCHTDA FTLSGDDPEGVFPAVLGHEGGGVVVEVGEGVTSLKPGDHVIPLYTAECGECKFCKSGK TNLCQAVRATQGKGLMPDGTTRFSYNGEPVYHYMGTSTFSEYTVCAEISLAKVNPQAP LDKVCLLGCGVTTGIGAVHNTAKVKAGDTVAVFGLGGIGLAVIQGAVQAKAGRILAVD TNPEKFTLAGEMGATDFINPNDYDKPIQDVIVELTDGGVDFSFECIGNVNVMRAALEC CHKGWGESIIIGVAGAGQEIKTRPFQLVTGRVWRGSAFGGVKGRTQLPGMVEDAMNGK IRLDPFITHRLPLEQINDAFELMHQGKSIRTVIHFGDN" misc_feature complement(1717682..1718785) /locus_tag="STM1627" /note="class III alcohol dehydrogenases; Region: alcohol_DH_class_III; cd08300" /db_xref="CDD:176260" misc_feature complement(order(1717847..1717849,1717919..1717921, 1718279..1718281,1718519..1718524,1718600..1718602, 1718627..1718635,1718660..1718662,1718666..1718668)) /locus_tag="STM1627" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:176260" misc_feature complement(order(1718279..1718281,1718597..1718602, 1718666..1718668)) /locus_tag="STM1627" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176260" misc_feature complement(order(1717694..1717696,1717844..1717852, 1717922..1717927,1717979..1717984,1717994..1717999, 1718117..1718119,1718129..1718134,1718192..1718206, 1718267..1718269,1718279..1718281,1718660..1718665)) /locus_tag="STM1627" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:176260" misc_feature complement(order(1718468..1718470,1718492..1718494, 1718501..1718503,1718510..1718512)) /locus_tag="STM1627" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176260" misc_feature complement(order(1717847..1717864,1717871..1717879, 1717886..1717909,1717916..1717918,1717943..1717954, 1717973..1717978,1718009..1718011,1718024..1718026, 1718465..1718467,1718471..1718473,1718477..1718482, 1718486..1718488,1718495..1718500)) /locus_tag="STM1627" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176260" regulatory complement(1718793..1718798) /regulatory_class="ribosome_binding_site" /locus_tag="STM1627" /note="putative RBS for STM1627; RegulonDB:STMS1H001825" gene complement(1718817..1719103) /locus_tag="STM1628" /db_xref="GeneID:1253146" CDS complement(1718817..1719092) /locus_tag="STM1628" /note="similar to E. coli putative alpha helix chain (AAC73460.1); Blastp hit to AAC73460.1 (98 aa), 52% identity in aa 8 - 98" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460587.1" /db_xref="GeneID:1253146" /translation="MPHSPEDKKRILTRVRRIRGQVEALERALESGEPCLAILQQIAA VRGASNGLMSEMVEIHLKDELVSGETTPDQRAVRMAEIGHLLRAYLK" misc_feature complement(1718823..1719086) /locus_tag="STM1628" /note="Transcriptional regulators RcnR and FrmR, and related domains; this domain family was previously known as part of DUF156; Region: RcnR-FrmR-like_DUF156; cd10153" /db_xref="CDD:197388" misc_feature complement(order(1718901..1718903,1718913..1718915, 1718988..1718990,1719084..1719086)) /locus_tag="STM1628" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(1718832..1718861,1718865..1718870, 1718898..1718900,1718907..1718915,1718919..1718927, 1718931..1718936,1718943..1718948,1718955..1718960, 1718964..1718969,1718973..1718981,1718985..1718993, 1718997..1719008,1719015..1719020,1719024..1719029, 1719036..1719038,1719045..1719050,1719057..1719062, 1719069..1719071)) /locus_tag="STM1628" /note="putative homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(1718832..1718843,1718850..1718852, 1718913..1718915,1718925..1718927,1718934..1718936, 1718943..1718948,1718955..1718960,1718964..1718969, 1718973..1718981,1718985..1718993,1718997..1719008, 1719015..1719020,1719024..1719029,1719036..1719038, 1719045..1719050,1719057..1719062,1719069..1719071)) /locus_tag="STM1628" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(1718844..1718849,1718853..1718861, 1718865..1718870,1718898..1718903,1718907..1718912, 1718919..1718924,1718931..1718933)) /locus_tag="STM1628" /note="putative homodimer-homodimer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(1718850..1718852,1718913..1718915)) /locus_tag="STM1628" /note="putative allosteric switch controlling residues; other site" /db_xref="CDD:197388" regulatory complement(1719098..1719103) /regulatory_class="ribosome_binding_site" /locus_tag="STM1628" /note="putative RBS for STM1628; RegulonDB:STMS1H001826" gene 1719608..1720016 /locus_tag="STM1629" /db_xref="GeneID:1253147" regulatory 1719608..1719613 /regulatory_class="ribosome_binding_site" /locus_tag="STM1629" /note="putative RBS for STM1629; RegulonDB:STMS1H001827" CDS 1719615..1720016 /locus_tag="STM1629" /codon_start=1 /transl_table=11 /product="putative dipicolinate reductase" /protein_id="NP_448047.1" /db_xref="GeneID:1253147" /translation="MPISICKHGAPFVVQHENRYGSGASQSSSLSKSIRHISNSHEEI KFISCYSANGACFSNAQMLANASGRPVIGYYGKINKLTASLDNSGRIFRPQHKLAANI CYVGNRLLSAPVQLGFGLKHLLTCHSNGNVR" gene complement(1720145..1720861) /locus_tag="STM1630" /db_xref="GeneID:1253148" CDS complement(1720145..1720861) /locus_tag="STM1630" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460589.1" /db_xref="GeneID:1253148" /translation="MNDDSIIKNSSMLLAYLGGLGWGSAYFYGWGVSAYYGFPWWYVG VGPDNIARSLFHAISLMAIFIIAWGVGILLFFLVKQKARIHDISFLRLFLAAVLFFIP IVIEFSLLTESFLWELFFIILLVALCLSVGMRFYSKLMPVICFTQLSWVRRHCFTIVM LGFIIYFFIFSFFVGIYKPQLKKEYEMILYDGGWYYVLARYHDSFILSKSFTKNNNRF IIFRPEDGHSYEITLVKVRL" gene 1721280..1722513 /gene="sseJ" /locus_tag="STM1631" /db_xref="GeneID:1253149" regulatory 1721280..1721285 /regulatory_class="ribosome_binding_site" /gene="sseJ" /locus_tag="STM1631" /note="putative RBS for sseJ; RegulonDB:STMS1H001828" CDS 1721287..1722513 /gene="sseJ" /locus_tag="STM1631" /note="regulated by SPI-2; secreted effector J SseJ (gi|9931614)" /codon_start=1 /transl_table=11 /product="Salmonella translocated effector" /protein_id="NP_460590.1" /db_xref="GeneID:1253149" /translation="MPLSVGQGYFTSSISSEKFNAIKESARLPELSLWEKIKAYFFTT HHAEALECIFNLYHHQELNLTPVQVRGAYIKLRALASQGCKEQFIIESQEHADKLIIK DDNGENILSIEVECHPEAFGLAKEINKSHPKPKNISLGDITRLVFFGDSLSDSLGRMF EKTHHILPSYGQYFGGRFTNGFTWTEFLSSPHFLGKEMLNFAEGGSTSASYSCFNCIG DFVSNTDRQVASYTPSHQDLAIFLLGANDYMTLHKDNVIMVVEQQIDDIEKIISGGVN NVLVMGIPDLSLTPYGKHSDEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYETA DAFKVIMEAASNIGYDTENPYTHHGYVHVPGAKDPQLDICPQYVFNDLVHPTQEVHHC FAIMLESFIAHHYSTE" misc_feature 1721287..1722510 /gene="sseJ" /locus_tag="STM1631" /note="type III secretion system effector; Region: PRK15381" /db_xref="CDD:185279" gene complement(1722634..1722978) /locus_tag="STM1632" /db_xref="GeneID:1253150" CDS complement(1722634..1722978) /locus_tag="STM1632" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460591.1" /db_xref="GeneID:1253150" /translation="MYLNRFCYLLLIFAAVGSIFTSHPVAMWFLLANVLTLAIYGIDK TAARKTWRRVPESTLLVFGVVGGWPGAIVGQQLFRHKTQKQPFKTYFIVSVIVSILVT VAIYRLYPFLSY" misc_feature complement(1722655..1722921) /locus_tag="STM1632" /note="Uncharacterized membrane protein YsdA, DUF1294 family [Function unknown]; Region: YsdA; COG3326" /db_xref="CDD:442555" gene 1723877..1724646 /locus_tag="STM1633" /db_xref="GeneID:1253151" regulatory 1723877..1723882 /regulatory_class="ribosome_binding_site" /locus_tag="STM1633" /note="putative RBS for STM1633; RegulonDB:STMS1H001829" CDS 1723885..1724646 /locus_tag="STM1633" /note="similar to E. coli putative periplasmic binding transport protein (AAC74987.1); Blastp hit to AAC74987.1 (266 aa), 25% identity in aa 19 - 232" /codon_start=1 /transl_table=11 /product="putative periplasmic binding protein" /protein_id="NP_460592.1" /db_xref="GeneID:1253151" /translation="MLSKKFGLSMIVLGIMSSSAFADSIVEGRTLNVAVSPASPPMLF KSADGKLQGIDLELFSSYCQSRHCKLNITEYAWDGMLGAVASGQADVAFSGISITDKR KKVIDFSEPYYINSFYLVSMANHKITLNNLNELNKYSIGYPRGMAYSDLIKNDLEPKG YYSLSKVKLYPTYNETMADLKNGNLDLAFIEEPVYFTFKNKKKMPIESRYVFKNVDQL GIAFKKGSPVRDDFNLWLKEQGPQKISGIVDSWMK" misc_feature 1723972..1724637 /locus_tag="STM1633" /note="Periplasmic substrate binding domain of ABC-type transporter specific to alanine; the type 2 periplasmic binding protein; Region: PBP2_Ala; cd13628" /db_xref="CDD:270346" misc_feature order(1724113..1724115,1724167..1724175,1724188..1724190, 1724320..1724328,1724455..1724457,1724536..1724538) /locus_tag="STM1633" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270346" gene 1724647..1725300 /locus_tag="STM1634" /db_xref="GeneID:1253152" regulatory 1724647..1724652 /regulatory_class="ribosome_binding_site" /locus_tag="STM1634" /note="putative RBS for STM1634; RegulonDB:STMS1H001830" CDS 1724653..1725300 /locus_tag="STM1634" /note="similar to E. coli putative transport system permease protein (former yecC) (AAC74985.1); Blastp hit to AAC74985.1 (222 aa), 31% identity in aa 14 - 213" /codon_start=1 /transl_table=11 /product="putative amino acid ABC transporter permease component" /protein_id="NP_460593.1" /db_xref="GeneID:1253152" /translation="MSSGNMLAIFYFLLEGIGNTLLVTFTCFLSAFLTGLTVAVLRRL SPLPLQKILDVLVFILRGIPILIAVFLVYFGLPSIGIYVSPLVAMNLSVGLISGSYLA EVFRGALKLVEPFEITVAKVAGMRQLQVIINIELPQMLRFSVPGIINEFSSVLKATPF AYTVGIAEITKQAMSLTAITLNGLQIYTLAGVLYFIIYKVFTLLAGVFEKKYRIS" misc_feature 1724668..1725297 /locus_tag="STM1634" /note="ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; Region: HisM; COG0765" /db_xref="CDD:440528" gene 1725318..1726056 /locus_tag="STM1635" /db_xref="GeneID:1253153" regulatory 1725318..1725323 /regulatory_class="ribosome_binding_site" /locus_tag="STM1635" /note="putative RBS for STM1635; RegulonDB:STMS1H001831" CDS 1725325..1726056 /locus_tag="STM1635" /note="ATPase component; similar to E. coli putative ATP-binding component of a transport system (AAC76303.1); Blastp hit to AAC76303.1 (252 aa), 42% identity in aa 11 - 230" /codon_start=1 /transl_table=11 /product="putative ABC-type polar amino acid transport system" /protein_id="NP_460594.1" /db_xref="GeneID:1253153" /translation="MALLKLKEISKEYSGKKVLDTVSLKIQSGDMKVVMGPSGCGKTT LLRCLLRLEEPDYGNIYFHGKNIYDKEFTILEFRKKVGCVFQNYALYRHLNVMDNITL ALCKVFGMPGQLAREKALHELQKLDMASHSAKYPSQLSGGQQQRVALARTMVTDPELI IFDEPTSALDPLMTREVGMLIKQLHDNGVTILCVTHDIRLARLLSDNVTFLNHGKIRA EGAFTDLALRETDPDIHCFFSEAQR" misc_feature 1725331..1725984 /locus_tag="STM1635" /note="ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]; Region: GlnQ; COG1126" /db_xref="CDD:440743" gene 1726047..1726733 /locus_tag="STM1636" /db_xref="GeneID:1253154" regulatory 1726047..1726052 /regulatory_class="ribosome_binding_site" /locus_tag="STM1636" /note="putative RBS for STM1636; RegulonDB:STMS1H001832" CDS 1726053..1726733 /locus_tag="STM1636" /note="similar to E. coli putative transport system permease protein (former yecC) (AAC74985.1); Blastp hit to AAC74985.1 (222 aa), 34% identity in aa 10 - 216" /codon_start=1 /transl_table=11 /product="putative ABC-type transport system probable membrane spanning protein" /protein_id="NP_460595.1" /db_xref="GeneID:1253154" /translation="MIAGWSLFFNDLTEQLPLVVDGIKETCKLALIVSITGFLWGIII FFLSLSHRPVVKAITRLYMDFFIGTPLILILFVIYYGLPQSGIHLSSFTVAVTGFTLN VGAYNAAYMTTAYNALNKYETEAAVVQGLNKRQVFLWIILPQVLLSSIPALTNQVINN LKDSTIVFLIQYTEFFARIQEVAATSFKFFHAYLFAAIVYLIGVTFIVGLTRFLEHRL LRHYGQGY" misc_feature 1726065..1726718 /locus_tag="STM1636" /note="ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]; Region: HisM; COG0765" /db_xref="CDD:440528" gene 1726863..1728420 /locus_tag="STM1637" /db_xref="GeneID:1253155" regulatory 1726863..1726868 /regulatory_class="ribosome_binding_site" /locus_tag="STM1637" /note="putative RBS for STM1637; RegulonDB:STMS1H001833" CDS 1726870..1728420 /locus_tag="STM1637" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460596.1" /db_xref="GeneID:1253155" /translation="MALPQLSIWQPGDGLRKIKYKYHVCLIVIFSVLIRLLFLTDRYL WCDEASSVLISRHSVDNLLFHAAFDVHPPLYYLLLHDWMILWGDSIAAVRSLSLLFGI LTVVLVIALTRWLANERTALLAGWFAALMPMAVHYSQETRMYALMGMLTLAAALALMM WIKTPTHNRYLVAYALLMTFSFYTHYFTLFTLIAHWIAVTILSCQSHKTACYLKLPGW WFANLAIAVAYLPWLPVLFNLLTHLAQLRAGNDIGWIPPVTWRDLPAMYWHFFTGNNG QGFPSFILWLAVGGFIGTVGRISLCNGEYERYQLILFCNLVIPVMLVFIISWWMPLFI DRYFFFSSLSIPPLLAVLLTRAKKAVCGFWFILFTLLFGYGSYHNNPEHIDEFKPLVN YINTRHQPNDAVVVSKMFDYLSYVYYNKRDYRTFLYTPPNAHGTSGRPNAYGFGSLFY AQADQTYIDTLTTLSKSYHRVWLVSGGNFSQDYPLPSEWQNIAKFRSGRFQVQLFVIP TQQARQMQ" misc_feature 1726894..1728009 /locus_tag="STM1637" /note="Uncharacterized membrane protein PF0508, contains N-terminal glycosyltransferase domain of PMT family [General function prediction only]; Region: COG5305" /db_xref="CDD:444104" gene 1729109..1729546 /locus_tag="STM1638" /db_xref="GeneID:1253156" CDS 1729109..1729546 /locus_tag="STM1638" /note="similar to E. coli orf, hypothetical protein (AAC73663.1); Blastp hit to AAC73663.1 (143 aa), 55% identity in aa 1 - 140" /codon_start=1 /transl_table=11 /product="putative SAM-dependent methyltransferase" /protein_id="NP_460597.1" /db_xref="GeneID:1253156" /translation="MDLNPDSLKIAASRVGNTKIRATLQHDVFDTFPADWHGRFDSVS MYYLLHCLPGEMTTKAKAIKNAGMALKPGGTLFGATILGKEVPHNAFGKKLMAVYNKK GIFSNTNDSADTLRSVLDEHFAKVTLEQHGAVALFSATTPRSS" misc_feature <1729109..1729336 /locus_tag="STM1638" /note="Methyltransferase domain; Region: Methyltransf_12; pfam08242" /db_xref="CDD:400515" gene complement(1729817..1730358) /gene="cybB" /locus_tag="STM1639" /db_xref="GeneID:1253157" CDS complement(1729817..1730347) /gene="cybB" /locus_tag="STM1639" /EC_number="1.10.2.-" /note="similar to E. coli cytochrome b(561) (AAC74500.1); Blastp hit to AAC74500.1 (188 aa), 84% identity in aa 13 - 187" /codon_start=1 /transl_table=11 /product="cytochrome b(561)" /protein_id="NP_460598.1" /db_xref="GeneID:1253157" /translation="MGNKYSGLQIGIHWLVFFLVIVAYAAMELRGFAPRSYRPWFNMT HVSCGITILLLMVARLFIRLKYPTPPIVPRPKPMMTGMAHLGHLVIYLLFIALPVIGL VMMYNRGNPWVAFGITMPHAAEANFERVDMLKSWHVTLANLGYFVIGLHAIAALMHHY FWKDNTLLRMMPRKRD" misc_feature complement(1729823..1730347) /gene="cybB" /locus_tag="STM1639" /note="cytochrome b561; Provisional; Region: PRK11513" /db_xref="CDD:236921" regulatory complement(1730353..1730358) /regulatory_class="ribosome_binding_site" /gene="cybB" /locus_tag="STM1639" /note="putative RBS for cybB; RegulonDB:STMS1H001834" gene complement(1730464..1731275) /gene="ydcF" /locus_tag="STM1640" /db_xref="GeneID:1253158" CDS complement(1730464..1731264) /gene="ydcF" /locus_tag="STM1640" /note="similar to E. coli orf, hypothetical protein (AAC74496.1); Blastp hit to AAC74496.1 (266 aa), 68% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460599.1" /db_xref="GeneID:1253158" /translation="MNTTPFPALSAETLLAVNTVGQWLAQNDFSGEQPYSSDCVVLAG NAVIPTIDAACRIAKAQGVPLLISGGIGHSTPFLYAVIARHPRYHTIRTSGRAEAAIL ADIANQFWHIPAEKIWLEDRSTNCGENARFSCALIRQAKENINTAIVVQDPTMQRRTI AAFRRVTNDDTDAPRWLSFPGFVPVLRHLNDGTRFANVEEGIWTVERYLSLIAGELPR LRDDETGYGPRGKDFIIHVDIPRDIENAWQVLQADTTLRSALGQRALR" misc_feature complement(1730698..1731243) /gene="ydcF" /locus_tag="STM1640" /note="Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family [Cell wall/membrane/envelope biogenesis]; Region: ElyC; COG1434" /db_xref="CDD:441043" regulatory complement(1731270..1731275) /regulatory_class="ribosome_binding_site" /gene="ydcF" /locus_tag="STM1640" /note="putative RBS for ydcF; RegulonDB:STMS1H001835" gene complement(1731328..1735230) /gene="hrpA" /locus_tag="STM1641" /db_xref="GeneID:1253159" CDS complement(1731328..1735230) /gene="hrpA" /locus_tag="STM1641" /note="similar to E. coli helicase, ATP-dependent (AAC74495.1); Blastp hit to AAC74495.1 (1281 aa), 95% identity in aa 1 - 1280" /codon_start=1 /transl_table=11 /product="ATP-dependent helicase" /protein_id="NP_460600.3" /db_xref="GeneID:1253159" /translation="MTEQSTLTLQVLQQRLDALMLRDKQRFARRLHGVKKVKNPDAQQ AIFQTMAKEIEQAAAQVALREAARPSITYPQNLPVSQKKQDILEAIRDHQVVIVAGET GSGKTTQLPKICMELGRGIKGLIGHTQPRRLAARTVANRIAEELQTEPGGCIGYKVRF SDHVSSNTMVKLMTDGILLAEIQQDRLLMQYDTLIIDEAHERSLNIDFLLGYLKELLP RRPDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQ AIFDAVDELGRESPGDILIFMSGEREIRDTADALNKLNLRHTEVLPLYARLSNSEQNR VFQSHSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQAS ANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAA FPFVEAPDKRNIQDGVRLLEELGAITADEQQTAYKLTPLGRQLSQLPVDPRLARMVLE AQKHGCVREAMIITSALSIQDPRERPVDKQQASDEKHRRFHDKESDFLAFVNLWNYLG EQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHV ALLTGLLSHIGMKDADKQEYTGARNARFSIFPGSGLFKKPPKWTMVAELVETSRLWGR IAARIEPEWVEPVAQHLIKRSYSEPHWERAQGAVMATEKVTVYGLPIVAARKVNYSQI DPALCRELFIRHALVEGDWQTRHAFFRENLKLRAEVEELEHKSRRRDILVDDDTLFEF YDQRISHDVISARHFDSWWKKISRETPDLLNFEKSMLIKEGAEKISKLDYPNFWHQGN LKLRLSYQFEPGADADGVTVHIPLPLLNQVDESGFEWQIPGLRRELVIALIKSLPKPV RRNFVPAPNYAEAFLGRVTPLELPLLDALERELRRMTGVTVDREDWHWDQVPEHLKIT FRVVNDKNKKLQEGRSLAELKNALKGKVQETLSAVADDGIEQSGLHIWSFGELPESYE QKRGNYKVKAWPALVDERDSVAIKLFDNPLEQQQAMWCGLRRLLLLNIPSPIKYLHEK LPNKAKLGLYFNPYGKVLELIDDCIACGVDKLIDANGGPVWSEAGFTALHEKVRAELN DTVVDIAKQVERILTTVFNINKRLKGRVDMSMALGLSDIKAQMSGLVYRGFVTGNGFK RLGDTLRYLQAIEKRLEKLAVDPHRDRAQMLKVESVQQAWQQWINKLPPARREDDDVK EIRWMIEELRVSYFAQQLGTPYPISDKRILQAMDQITA" misc_feature complement(1731337..1735218) /gene="hrpA" /locus_tag="STM1641" /note="ATP-dependent RNA helicase HrpA; Provisional; Region: PRK11131" /db_xref="CDD:182986" gene 1735419..1736036 /gene="acpD" /locus_tag="STM1642" /db_xref="GeneID:1253160" regulatory 1735419..1735424 /regulatory_class="ribosome_binding_site" /gene="acpD" /locus_tag="STM1642" /note="putative RBS for acpD; RegulonDB:STMS1H001836" CDS 1735431..1736036 /gene="acpD" /locus_tag="STM1642" /EC_number="3.1.4.14" /note="similar to E. coli acyl carrier protein phosphodiesterase (AAC74494.1); Blastp hit to AAC74494.1 (201 aa), 87% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="acyl carrier protein phosphodiesterase" /protein_id="NP_460601.1" /db_xref="GeneID:1253160" /translation="MSKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLA ANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELIAELKAHDVIVIAAPMYNFNIP TQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVF LGFIGITDVNFVFAEGIAYGPEVAAKAQADAKAAIDSVVAA" misc_feature 1735431..1736033 /gene="acpD" /locus_tag="STM1642" /note="azoreductase; Reviewed; Region: PRK00170" /db_xref="CDD:234675" gene complement(1736033..1736482) /locus_tag="STM1643" /db_xref="GeneID:1253161" CDS complement(1736033..1736482) /locus_tag="STM1643" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460602.1" /db_xref="GeneID:1253161" /translation="MTSEKLSAACHCGSVVFTVQLSDGFHTARRCNCSFCRMRGAVAV SAPLSGIKVLKGQDKLTEYRFNTGKAVHFFCSVCGIYTFHQRRSNPDQYGVNVACIEN MSPFDFACVEVNDGVTHPSDGGSSGVVGYLRYKPKKSPPVETGGKNI" misc_feature complement(<1736165..1736473) /locus_tag="STM1643" /note="Uncharacterized conserved protein [Function unknown]; Region: COG3791" /db_xref="CDD:443005" gene complement(1736625..1736957) /gene="ydbL" /locus_tag="STM1644" /db_xref="GeneID:1253162" CDS complement(1736625..1736948) /gene="ydbL" /locus_tag="STM1644" /note="similar to E. coli orf, hypothetical protein (AAC74465.1); Blastp hit to AAC74465.1 (110 aa), 70% identity in aa 3 - 109" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460603.1" /db_xref="GeneID:1253162" /translation="MKKYLILWVLTLSLLTPSVWALTLDEARTQGRVGETLNGYLVAL KNDAETQKLVLDINHARRASYQQLADSNHLPVDEVAKMAGQKLVERARPGEYVQGING KWMRK" misc_feature complement(1736628..1736948) /gene="ydbL" /locus_tag="STM1644" /note="Uncharacterized conserved protein YdbL, DUF1318 family [Function unknown]; Region: YdbL; COG3784" /db_xref="CDD:442998" regulatory complement(1736952..1736957) /regulatory_class="ribosome_binding_site" /gene="ydbL" /locus_tag="STM1644" /note="putative RBS for ydbL; RegulonDB:STMS1H001837" gene complement(1736956..1737158) /gene="ynbE" /locus_tag="STM1645" /db_xref="GeneID:1253163" CDS complement(1736956..1737147) /gene="ynbE" /locus_tag="STM1645" /note="similar to E. coli orf, hypothetical protein (AAC74464.1); Blastp hit to AAC74464.1 (61 aa), 73% identity in aa 1 - 61" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460604.1" /db_xref="GeneID:1253163" /translation="MKMSIAMLSALASFIVVGCTPRIEVAAPEQPITINMNVKIEHEI HIKVDKDVEELLKSRSDLF" misc_feature complement(1736965..1737066) /gene="ynbE" /locus_tag="STM1645" /note="YnbE-like lipoprotein; Region: Lipoprotein_19; pfam13617" /db_xref="CDD:463935" gene complement(1737147..1739800) /gene="ydbH" /locus_tag="STM1646" /db_xref="GeneID:1253164" CDS complement(1737147..1739783) /gene="ydbH" /locus_tag="STM1646" /note="similar to E. coli orf, hypothetical protein (AAC74463.1); Blastp hit to AAC74463.1 (879 aa), 78% identity in aa 1 - 878" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460605.1" /db_xref="GeneID:1253164" /translation="MKGKYKAALALLLLLILIPLTLLMTLGLWVPTLAGIWLPVGTRI ALEQSPRLTRHGLVIPDLRYLVNDCSLAHITQAELTHPSRWLLNIKSLKLDAACLAKL PATEASPAAPRTLAQWQSMLPNTWINIDNVILAPWPEWQGKLAISMTPVIQQIRYQGE KVKFQGQLRGQALTVSQLEIAALANQPPVSLAGEFVLPLVPDGLPVSGHAAATLRLPQ EPSLVDAELEWRDNAGQLIVMARGNPDPILDLPWAVTRQRLTISDGRWNWPYQGFPLS GRLAFNIDNWQAGPDNAQVSGRLNILTQGDAGKANAVLTIGPGKLSMDSSEMPLQLTG EAKQKDLIFYAVLPAMFRGSLADPQLTFAPGALLRSRGRVIDALDIDEIRWPLAGVKV TPRGVDGRLQAILRAHENEMGDFVLHLDGLANDFLPDAGRWRWRYWGQGSFTPMRAHW DIAGQGEWHDNTIRLTSLSTGFDQLHYGAMTVTSPRLALNKPIVWVRDATTPSLQGAL SLVAGKTVFTSGSVLPPSTLNFSVEGREPTLFQFKGDLRAGAIGPVRLNGRWDGERLR GQAWWPKQSLIVFQPLLPPDWKMTLREGSLYAQVAFSAAQGQGFEAGGHGVLKGGSAW MPDNKINGVDFILPFRFHNGAWQLGTRGPISLRIAGIVNQVTAKNITADLQGGYPWSE SNPLLLSDVSVDVLGGQIIMKQLRMPQHDPALLRVQNISSSELISAINPKQFAMSGPV SGALPLWLNNEKWIIKDGWLTNPGPMTLRIDKDTADAVVKDNVTAGSAINWLRYMEIT HSWTKINVDNLGVLTMQAAITGKSRVDGKTAIVNLNYTHEENVFTLWRSLRFGDNLQA WLEQNTALPQPPCRKDKDCEDK" misc_feature complement(1737201..1739714) /gene="ydbH" /locus_tag="STM1646" /note="YdbH family protein; Region: PRK10695" /db_xref="CDD:182654" regulatory complement(1737153..1737158) /regulatory_class="ribosome_binding_site" /gene="ynbE" /locus_tag="STM1645" /note="putative RBS for ynbE; RegulonDB:STMS1H001838" regulatory complement(1739795..1739800) /regulatory_class="ribosome_binding_site" /gene="ydbH" /locus_tag="STM1646" /note="putative RBS for ydbH; RegulonDB:STMS1H001839" gene 1740009..1741012 /gene="ldhA" /locus_tag="STM1647" /db_xref="GeneID:1253165" regulatory 1740009..1740014 /regulatory_class="ribosome_binding_site" /gene="ldhA" /locus_tag="STM1647" /note="putative RBS for ldhA; RegulonDB:STMS1H001840" CDS 1740023..1741012 /gene="ldhA" /locus_tag="STM1647" /EC_number="1.1.1.28" /note="similar to E. coli fermentative D-lactate dehydrogenase, NAD-dependent (AAC74462.1); Blastp hit to AAC74462.1 (329 aa), 94% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="NAD-dependent fermentative D-lactate dehydrogenase" /protein_id="NP_460606.1" /db_xref="GeneID:1253165" /translation="MKLAVYSTKQYDKKYLQQVNEAFGFELEFFDFLLTEKTAKTANG CEAVCIFVNDDGSRPVLEELKKHGVKYIALRCAGFNNVDLDAAKELGLQVVRVPAYSP EAVAEHAIGMMMTLNRRIHRAYQRTRDANFSLEGLTGFTMHGKTAGVIGTGKIGVAAL RILKGFGMRLLAFDPYPSTAALDLGVEYVDLQTLFAESDVISLHCPLTPENYHLLNHA AFDQMKNGVMVINTSRGALIDSQAAIEALKNQKIGSLGMDVYENERDLFFEDKSNDVI QDDVFRRLSACHNVLFTGHQAFLTAEALISISETTLQNLSQLEKGEACPNALF" misc_feature 1740023..1741006 /gene="ldhA" /locus_tag="STM1647" /note="D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains; Region: LDH_like_2; cd12183" /db_xref="CDD:240659" misc_feature order(1740248..1740256,1740320..1740322,1740722..1740724, 1740905..1740907,1740914..1740916) /gene="ldhA" /locus_tag="STM1647" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:240659" misc_feature order(1740320..1740322,1740335..1740337,1740473..1740475, 1740479..1740490,1740539..1740547,1740632..1740643, 1740653..1740655,1740662..1740664,1740716..1740724, 1740794..1740799,1740905..1740907,1740911..1740916) /gene="ldhA" /locus_tag="STM1647" /note="putative NAD binding site [chemical binding]; other site" /db_xref="CDD:240659" gene 1741113..1741533 /gene="hslJ" /locus_tag="STM1648" /db_xref="GeneID:1253166" regulatory 1741113..1741118 /regulatory_class="ribosome_binding_site" /gene="hslJ" /locus_tag="STM1648" /note="putative RBS for hslJ; RegulonDB:STMS1H001841" CDS 1741123..1741533 /gene="hslJ" /locus_tag="STM1648" /note="similar to E. coli heat shock protein hslJ (AAC74461.1); Blastp hit to AAC74461.1 (140 aa), 69% identity in aa 1 - 138" /codon_start=1 /transl_table=11 /product="heat shock protein hslJ" /protein_id="NP_460607.1" /db_xref="GeneID:1253166" /translation="MKKIVTLVALSIIMTGCVSSGKVSVKREQLEHHRFVLESVNGKT VTGPELSFGEDMTVSGKMCNQFTGEGKLSDGELKVKNLAMTRMMCADPQLNALDGTLS ELFSKGAQVDLTANQLTLATAETTLMYKLADLAH" misc_feature 1741123..1741530 /gene="hslJ" /locus_tag="STM1648" /note="heat shock protein HslJ; Region: PRK10449" /db_xref="CDD:182470" gene complement(1741577..1741738) /locus_tag="STM1649" /db_xref="GeneID:1253167" CDS complement(1741577..1741732) /locus_tag="STM1649" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460608.3" /db_xref="GeneID:1253167" /translation="MSSAGEANCAMIGGSLSAARQLDGSVIGMCALPNGKRCSEQSLA AGSCGSY" misc_feature complement(1741586..>1741732) /locus_tag="STM1649" /note="Putative hemolysin [General function prediction only]; Region: Hlx; COG3042" /db_xref="CDD:442276" regulatory complement(1741733..1741738) /regulatory_class="ribosome_binding_site" /locus_tag="STM1649" /note="putative RBS for STM1649; RegulonDB:STMS1H001842" gene 1741754..1742058 /locus_tag="STM1650" /db_xref="GeneID:1253168" regulatory 1741754..1741759 /regulatory_class="ribosome_binding_site" /locus_tag="STM1650" /note="putative RBS for STM1650; RegulonDB:STMS1H001843" CDS 1741759..1742058 /locus_tag="STM1650" /codon_start=1 /transl_table=11 /product="putative reverse transcriptase" /protein_id="NP_460609.1" /db_xref="GeneID:1253168" /translation="MPRLPAEQVRYCKPTIITRHIPPKTLRAFLSPLFIHPNDTALNN RQQKLTRREAKRAFMRFINIYWQFFTSFRQEIAILLPPGTQKRKWGLKGFAKIKG" gene 1742108..1745643 /gene="nifJ" /locus_tag="STM1651" /db_xref="GeneID:1253169" regulatory 1742108..1742113 /regulatory_class="ribosome_binding_site" /gene="nifJ" /locus_tag="STM1651" /note="putative RBS for nifJ; RegulonDB:STMS1H001844" CDS 1742119..1745643 /gene="nifJ" /locus_tag="STM1651" /EC_number="1.2.7.1" /note="similar to E. coli putative oxidoreductase, Fe-S subunit (AAC74460.1); Blastp hit to AAC74460.1 (1174 aa), 92% identity in aa 1 - 1174" /codon_start=1 /transl_table=11 /product="putative pyruvate-flavodoxin oxidoreductase" /protein_id="NP_460610.1" /db_xref="GeneID:1253169" /translation="MQTIDGNGAVASVAFRTSEVIAIYPITPSSTMAEQADAWAGNGL KNVWGDTPRVVEMQSEGGAIAAVHGALQTGSLSTSFTSSQGLLLMIPTLYKLAGQLTP FVLHVAARTVATHALSIFGDHSDVMAVRQTGCAMLCAASVQEAQDFALIAHRATLKSR VPFIHFFDGFRTSHEINKIIPLTNETILNLMPQAEIDAHRARALNPEHPVIRGTSANP DTYFQSREATNPWYNAVYDHVEEAMKAFGDATGRQYQPFEYYGHPQAERVIIMMGSAL GTCEEVVDELLIRGEKVGVLKVRLFRPFSAKHLLQALPETVRAIAVLDRTKEPGAQAE PLYLDVMTALAEAFNNGERETLPRTIGGRYGLSSKEFGPACVLAVFNELSRAKPKPRF TVGIYDDVTNLSLPLPENTLPGSAKLEALFYGLGSDGSVSATKNNIKIIGNSTPWYAQ GYFVYDSKKAGGLTVSHLRVSEKPIRSAYLIAQADFVGCHQLQFIDKYQMAERLKPGG IFLLNTPYSADEVWSRLPQEVQAVLNQKKARFYVVNAAKIARECGLGARINTVMQMAF FHLTHILPGDSALVELQGAIAKSYSSKGQDLVERNWQALALAQESLAEVPLQAVNPHS AHRPPVVSDAAPDFVKTVTAAMLAGLGDALPVSALPPDGTWPMGTTRWEKRNIAEEIP VWKEELCTQCNHCVAACPHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKYVLQV APEDCTGCNLCVEVCPAKDRQDPQIKAINMMSRLEHVEEEKVNYDFFLDLPEIERSKL ERIDIRTSQLITPLFEYSGACSGCGETPYIKLLTQLYGDRMLIANATGCSSIYGGNLP STPYTTDANGRGPAWANSLFEDNAEFGLGFRLSVDQHRARVMRLLAQFADRIPAELND ALHAEATPDVRREQVAALRQHLKSVAGAEELLKDADALVEKSIWLIGGDGWAYDIGFG GLDHVLSLTENVNILVLDTQCYSNTGGQASKATPLGAVTKFGEHGKRKARKDLGVSMM MYGHVYVAQISLGAQLNQTVKAIQEAEAWPGPSLIIAYSPCEEHGYDLALSHDQMRQL TATGFWPLYRFDPRRADEGKPPLALDSRPPSDALAETLLNEQRFRRLNAQQPEVAEQL WRDAALDLQKRYDFLALLAGKAEKPGAD" misc_feature 1742119..1745616 /gene="nifJ" /locus_tag="STM1651" /note="pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric; Region: pyruv_ox_red; TIGR02176" /db_xref="CDD:131231" gene 1746114..1746559 /gene="ynaF" /locus_tag="STM1652" /db_xref="GeneID:1253170" regulatory 1746114..1746119 /regulatory_class="ribosome_binding_site" /gene="ynaF" /locus_tag="STM1652" /note="putative RBS for ynaF; RegulonDB:STMS1H001845" CDS 1746125..1746559 /gene="ynaF" /locus_tag="STM1652" /note="similar to E. coli putative filament protein (AAC74458.1); Blastp hit to AAC74458.1 (168 aa), 90% identity in aa 25 - 168" /codon_start=1 /transl_table=11 /product="putative universal stress protein" /protein_id="NP_460611.1" /db_xref="GeneID:1253170" /translation="MNRTILVPIDISDSELTQRVISHVEAEAKIDDAKVHFLTVIPSL PYYASLGLAYSAELPAMDDLKAEAKSQLEAIIKKFNLPADRVQAHVAEGSPKDKILEM AKKLPADMVIIASHRPDITTYLLGSNAAAVVRHAECSVLVVR" misc_feature 1746125..1746556 /gene="ynaF" /locus_tag="STM1652" /note="universal stress protein UspF; Region: PRK15005" /db_xref="CDD:184967" gene complement(1746609..1746964) /locus_tag="STM1653" /db_xref="GeneID:1253171" CDS complement(1746609..1746947) /locus_tag="STM1653" /note="similar to E. coli methylviologen resistance (AAC73644.1); Blastp hit to AAC73644.1 (110 aa), 59% identity in aa 5 - 110" /codon_start=1 /transl_table=11 /product="putative membrane transporter of cations" /protein_id="NP_460612.1" /db_xref="GeneID:1253171" /translation="MTKEAVIFLFIAIVVEVIATISLKLSDSFTRLVPSLVTIIGYCI AFWCLTIPMRTIPAGIIYAIWSGVGIVLIGLIGWLFLGQKLDVPAIIGMLLIICGVIV INLFSKSVSH" misc_feature complement(1746612..1746929) /locus_tag="STM1653" /note="EamA-like transporter family; Region: EamA; cl23754" /db_xref="CDD:474045" regulatory complement(1746959..1746964) /regulatory_class="ribosome_binding_site" /locus_tag="STM1653" /note="putative RBS for STM1653; RegulonDB:STMS1H001846" gene 1747290..1748238 /gene="ydaO" /locus_tag="STM1654" /db_xref="GeneID:1253172" regulatory 1747290..1747295 /regulatory_class="ribosome_binding_site" /gene="ydaO" /locus_tag="STM1654" /note="putative RBS for ydaO; RegulonDB:STMS1H001847" CDS 1747303..1748238 /gene="ydaO" /locus_tag="STM1654" /note="similar to E. coli orf, hypothetical protein (AAC74426.1); Blastp hit to AAC74426.1 (311 aa), 94% identity in aa 1 - 311" /codon_start=1 /transl_table=11 /product="putative ATPase" /protein_id="NP_460613.1" /db_xref="GeneID:1253172" /translation="MQEIQKNTKKEQYNLNKLQKRLRRNVGEAIADFNMIEEGDRIMV CLSGGKDSYTMLEILRNLQQSAPINFSLVAVNLDQKQPGFPEHILPAYLEQLGVEYKI VEENTYGIVKEKIPEGKTTCSLCSRLRRGILYRTATELGATKIALGHHRDDILQTLFL NMFYGGKMKGMPPKLMSDDGKHIVIRPLAYCREKDIIRFAEAKAFPIIPCNLCGSQPN LQRQVIADMLRDWDKRYPGRIETMFSAMQNVVPSHLCDTNLFDFKGITHGSEVVDGGD LAFDREEIPLQPAGWQPEEDDTALEALRLDVIEVK" misc_feature 1747333..1748106 /gene="ydaO" /locus_tag="STM1654" /note="tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional; Region: PRK10696" /db_xref="CDD:236737" gene complement(1748282..1749655) /gene="dbpA" /locus_tag="STM1655" /db_xref="GeneID:1253173" CDS complement(1748282..1749655) /gene="dbpA" /locus_tag="STM1655" /note="stimulated by 23S rRNA; similar to E. coli ATP-dependent RNA helicase (AAC74425.1); Blastp hit to AAC74425.1 (457 aa), 87% identity in aa 1 - 457" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase" /protein_id="NP_460614.1" /db_xref="GeneID:1253173" /translation="MTTFSTLNVLPAAQLNNLTELGYLEMTPVQAAALPVILAGNDVR VQARTGSGKTAAFGLGLLHRIDVTLFQTQALVLCPTRELADQVAGELRRLARFLPNTK ILTLCGGQPFGAQRDSLQHAPHIIVATPGRLLDHLQKETVSLDALHILVMDEADRMLD MGFSDAIDEVIRFAPATRQTLLFSATWPEAIAAISGRVQQQPIRIEIDTVDALPAIEQ QFFETSAHEKISLLQTLLSQHQPASCVVFCNTKKDCQAVCDALNAVGQSALALHGDLE QRDRDQTLVRFANGSARILVATDVAARGLDIKSLELVVNYELAWDPEVHVHRIGRTAR AGSSGLAISFCAPEEAQRANILSEMLQLKLNWLNAPARQPLLPLAAEMATLCIDGGKK AKMRPGDILGALTGDIGLDGADIGKINVHPMHVYVAVRQAVAQKAWKQLQNGKIKGKS CRVRLLK" misc_feature complement(1748285..1749655) /gene="dbpA" /locus_tag="STM1655" /note="ATP-dependent RNA helicase DbpA; Provisional; Region: PRK11776" /db_xref="CDD:236977" gene complement(1750142..1751136) /locus_tag="STM1656" /db_xref="GeneID:1253174" CDS complement(1750142..1751125) /locus_tag="STM1656" /note="similar to E. coli orf, hypothetical protein (AAC74424.1); Blastp hit to AAC74424.1 (327 aa), 92% identity in aa 1 - 327" /codon_start=1 /transl_table=11 /product="putative Zn transport protein" /protein_id="NP_460615.1" /db_xref="GeneID:1253174" /translation="MEAIKGSDVNVPDAVFAWLLDGRGGVKPLEDNDVIDSQHPCWLH LNYTHPDSARWLASTPLLPNNVRDALAGESSRPRVSRMGEGTLITLRCINGSTDERPD QLVAMRLYMDERFIVSTRQRKVLALDDVVSDLQEGTGPVDCGGWLVDVCDALTDHASE FIEELHDKIIDLEDNLLDQQIPPRGFLALLRKQLIVMRRYMAPQRDVYARLASERLPW MSDDHRRRMQDIADRLGRGLDEIDACIARTGIMADEIAQVMQESLARRTYTMSLMAMV FLPSTFLTGLFGVNLGGIPGGGWRFGFSLFCILLVVLIGGVTLWLHRSKWL" misc_feature complement(1750145..1751116) /locus_tag="STM1656" /note="zinc transporter ZntB; Region: zntB; PRK09546" /db_xref="CDD:181941" misc_feature complement(order(1750433..1750435,1750499..1750501, 1750508..1750513,1750655..1750657,1750664..1750666, 1750748..1750753,1750757..1750768,1750808..1750813, 1750853..1750855,1750859..1750861,1750895..1750903, 1750985..1750987,1750994..1750996)) /locus_tag="STM1656" /note="Cl binding site [ion binding]; other site" /db_xref="CDD:213367" misc_feature complement(order(1750157..1750159,1750166..1750168, 1750202..1750207,1750214..1750219,1750253..1750276, 1750280..1750297,1750301..1750309,1750313..1750351, 1750355..1750378,1750385..1750393,1750397..1750402, 1750406..1750411,1750418..1750423,1750427..1750432, 1750439..1750444,1750448..1750453,1750484..1750489, 1750496..1750501,1750508..1750513,1750517..1750519, 1750529..1750534,1750538..1750543,1750550..1750555, 1750562..1750567,1750571..1750576,1750607..1750609, 1750616..1750621,1750625..1750630,1750637..1750639, 1750646..1750651,1750658..1750660,1750670..1750672, 1750682..1750684,1750691..1750693,1750727..1750729, 1750739..1750741,1750886..1750888,1750892..1750894, 1750922..1750927,1750934..1750936)) /locus_tag="STM1656" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:213367" regulatory complement(1751131..1751136) /regulatory_class="ribosome_binding_site" /locus_tag="STM1656" /note="putative RBS for STM1656; RegulonDB:STMS1H001848" gene complement(1751271..1752430) /locus_tag="STM1657" /db_xref="GeneID:1253175" CDS complement(1751271..1752425) /locus_tag="STM1657" /note="similar to E. coli methyl-accepting chemotaxis protein I, serine sensor receptor (AAC77311.1); Blastp hit to AAC77311.1 (551 aa), 39% identity in aa 195 - 519" /codon_start=1 /transl_table=11 /product="putative methyl-accepting chemotaxis protein" /protein_id="NP_460616.1" /db_xref="GeneID:1253175" /translation="MLRNISVRTCIILFMVCAFLLVDTLQIAFLHDLPILITCNIIYL ISALLLWWYMTCYLVVPINTVKKSIEEVAAGNLSIHISEFGNNCAGRLIPGINSLSEN ISALVREIRSSSQTAMTLSEQLAARSLSLSVKTEQQSASLIQTAASIDEMAASTKNNA DNTRMASIQADCATQCARKGGELMVRVTENMRSITDCASQMTEIISLIDGIAFQTNIL ALNAAVEAARAGDHGKGFSVVAGEVRNLAHRSAEAAKSIKALIDVTHDNVRQGAAIVQ EAEKNMQEIVGGSGQLNVLMSEISTTTREQEKGINQITLALSDLESATHSNVLMVEAL SASSDVLKAQVIELQTKTDKFRLSQPGYSEHALSHSHVSSLSTITRRGQA" misc_feature complement(1751346..>1752296) /locus_tag="STM1657" /note="Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cl46910" /db_xref="CDD:481250" misc_feature complement(order(1751424..1751429,1751436..1751438, 1751445..1751450,1751457..1751459,1751466..1751471, 1751475..1751480,1751487..1751492,1751496..1751501, 1751508..1751510,1751517..1751522,1751529..1751531, 1751538..1751543,1751550..1751555,1751559..1751564, 1751571..1751573,1751580..1751585,1751592..1751594, 1751601..1751606,1751643..1751648,1751655..1751660, 1751664..1751669,1751676..1751681,1751688..1751690, 1751697..1751702,1751709..1751711,1751718..1751720, 1751730..1751732,1751751..1751753,1751760..1751762, 1751772..1751774,1751781..1751786,1751793..1751795, 1751802..1751804,1751811..1751816,1751823..1751828, 1751835..1751837,1751844..1751849,1751853..1751855, 1751865..1751870,1751874..1751879,1751886..1751888, 1751895..1751900,1751907..1751912,1751919..1751921, 1751928..1751933,1751940..1751942,1751949..1751954, 1751958..1751963,1751970..1751972,1751979..1751984, 1751991..1751996)) /locus_tag="STM1657" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature complement(1751685..1751786) /locus_tag="STM1657" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" regulatory complement(1752425..1752430) /regulatory_class="ribosome_binding_site" /locus_tag="STM1657" /note="putative RBS for STM1657; RegulonDB:STMS1H001849" gene complement(1752836..1753413) /gene="ydaL" /locus_tag="STM1658" /db_xref="GeneID:1253176" CDS complement(1752836..1753399) /gene="ydaL" /locus_tag="STM1658" /note="similar to E. coli orf, hypothetical protein (AAC74422.1); Blastp hit to AAC74422.1 (187 aa), 86% identity in aa 1 - 187" /codon_start=1 /transl_table=11 /product="putative Smr domain protein" /protein_id="NP_460617.1" /db_xref="GeneID:1253176" /translation="MNLDDKALFLDAMEDVQPLKRHTDVHWQPTRNLKTPQRIDTLQL DNFLTTGFLDILPLNEPLEFRREGLQQGVIDKLRSGKYPQQASLNLLRQPVETCRKML FRFILEAQKEGLRNVLIIHGKGREAKSHANIVRSYVARWLTEFEDVQAYCSALPHHGG GGACYVALRKTVQAKQDNWERHAKRSR" misc_feature complement(1752845..1753390) /gene="ydaL" /locus_tag="STM1658" /note="DNA endonuclease SmrA; Region: endonuc_SmrA; NF033154" /db_xref="CDD:467968" regulatory complement(1753408..1753413) /regulatory_class="ribosome_binding_site" /gene="ydaL" /locus_tag="STM1658" /note="putative RBS for ydaL; RegulonDB:STMS1H001850" gene 1753649..1754172 /gene="ogt" /locus_tag="STM1659" /db_xref="GeneID:1253177" regulatory 1753649..1753654 /regulatory_class="ribosome_binding_site" /gene="ogt" /locus_tag="STM1659" /note="putative RBS for ogt; RegulonDB:STMS1H001851" CDS 1753657..1754172 /gene="ogt" /locus_tag="STM1659" /EC_number="2.1.1.63" /note="methylated-DNA--protein-cysteine methyltransferase. (SW:OGT_SALTY); cysteine-protein methyltransferase" /codon_start=1 /transl_table=11 /product="O-6-alkylguanine-DNA" /protein_id="NP_460618.1" /db_xref="GeneID:1253177" /translation="MLRLLEEKIATPLGPLWVVCDEQFRLRAIEWEQYRDRMEQLLNI HYRHEGYERVSATNPGGLSDKLADYFAGNLAVIDTLETATGGTPFQREVWQALRAIPC GQVMHYGQLAAQLGRPGAARAVGAANGANPISIVVPCHRVIGRNGTLTGYAGGVQRKE WLLRHEGYLLL" misc_feature 1753657..1754169 /gene="ogt" /locus_tag="STM1659" /note="methylated-DNA--[protein]-cysteine S-methyltransferase; Region: PRK10286" /db_xref="CDD:182355" protein_bind 1754206..1754228 /note="putative binding site for FNR, RegulonDB: STMS1H000155" /bound_moiety="FNR" gene 1754273..1755120 /gene="fnr" /locus_tag="STM1660" /db_xref="GeneID:1253178" regulatory 1754273..1754281 /regulatory_class="minus_35_signal" /gene="fnr" /locus_tag="STM1660" /note="putative -35_signal for fnr; RegulonDB:STMLTH004496" protein_bind 1754278..1754302 /gene="fnr" /locus_tag="STM1660" /note="putative binding site for FNR, RegulonDB: STMS1H000156" /bound_moiety="FNR" regulatory 1754300..1754308 /regulatory_class="minus_10_signal" /gene="fnr" /locus_tag="STM1660" /note="putative -10_signal for fnr; RegulonDB:STMLTH004496" CDS 1754326..1755120 /gene="fnr" /locus_tag="STM1660" /note="regulates aerobic, anaerobic respiration and osmotic balance (CRP family); fumarate and nitrate reduction regulatory protein. (SW:FNR_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_460619.3" /db_xref="GeneID:1253178" /translation="MLKLTNINYGLSRPMIPEKRIIRRIQSGGCAIHCQDCSISQLCI PFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQ ITGFHLAGDLVGFDAIGSGHHPSFAQALETSMVCEIPFETLDDLSGKMPNLRQQMMRL MSGEIKGDQDMILLLSKKNAEERLAAFIYNLSRRFAQRGFSPREFRLTMTRGDIGNYL GLTVETISRLLGRFQKSGMLAVKGKYITIENSDALAALAGHTRNVA" misc_feature 1754398..1755102 /gene="fnr" /locus_tag="STM1660" /note="fumarate/nitrate reduction transcriptional regulator Fnr; Region: PRK11161" /db_xref="CDD:183004" gene 1755258..1756218 /gene="ydaA" /locus_tag="STM1661" /db_xref="GeneID:1253179" regulatory 1755258..1755263 /regulatory_class="ribosome_binding_site" /gene="ydaA" /locus_tag="STM1661" /note="putative RBS for ydaA; RegulonDB:STMS1H001852" CDS 1755271..1756218 /gene="ydaA" /locus_tag="STM1661" /note="similar to E. coli orf, hypothetical protein (AAC74415.1); Blastp hit to AAC74415.1 (316 aa), 95% identity in aa 1 - 315" /codon_start=1 /transl_table=11 /product="putative universal stress protein" /protein_id="NP_460620.1" /db_xref="GeneID:1253179" /translation="MAMYQNMLVVIDPNQDDQPALRRAVYLHQRIGGKIKAFLPIYDF SYEMTTLLSPDERTAMRQGVISQRTAWIREQAKYYLEAGVPIEIKVVWHNRPFEAIIQ EVIAGSHDLVLKMAHQHDRLEAVIFTPTDWHLLRKCPSPVWMVKDQPWPEGGKALVAV NLASEEPYHNALNEKLVKETLQLAEQVNHTEVHLVGAYPVTPINIAIELPEFDPSVYN DAIRGQHLLAMKALRQKFSIDEKVTHVEKGLPEEVIPDLAEHLQAGIVVLGTVGRTGL SAAFLGNTAEQVIDHLRCDLLVIKPDEYQTPVELDDEDD" misc_feature 1755274..1756188 /gene="ydaA" /locus_tag="STM1661" /note="universal stress protein UspE; Provisional; Region: PRK11175" /db_xref="CDD:236871" gene complement(1756273..1756539) /gene="ynaJ" /locus_tag="STM1662" /db_xref="GeneID:1253180" CDS complement(1756273..1756527) /gene="ynaJ" /locus_tag="STM1662" /note="similar to E. coli orf, hypothetical protein (AAC74414.1); Blastp hit to AAC74414.1 (85 aa), 88% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460621.1" /db_xref="GeneID:1253180" /translation="MIMMKLKSAKGKKFLLCLLAVFIVAASVVTRATIGGVIEQYHIP LSEWTSSMYAIQSAMIFVYSLVFTILLAIPLGIYFLGGDE" misc_feature complement(1756279..1756518) /gene="ynaJ" /locus_tag="STM1662" /note="Protein of unknown function (DUF2534); Region: DUF2534; pfam10749" /db_xref="CDD:402400" regulatory complement(1756534..1756539) /regulatory_class="ribosome_binding_site" /gene="ynaJ" /locus_tag="STM1662" /note="putative RBS for ynaJ; RegulonDB:STMS1H001853" gene 1756748..1757797 /gene="ynaI" /locus_tag="STM1663" /db_xref="GeneID:1253181" regulatory 1756748..1756753 /regulatory_class="ribosome_binding_site" /gene="ynaI" /locus_tag="STM1663" /note="putative RBS for ynaI; RegulonDB:STMS1H001854" CDS 1756766..1757797 /gene="ynaI" /locus_tag="STM1663" /note="similar to E. coli orf, hypothetical protein (AAC74412.1); Blastp hit to AAC74412.1 (343 aa), 77% identity in aa 1 - 335" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_460622.1" /db_xref="GeneID:1253181" /translation="MFTEFFLKNAFNLAILFSCGMALLVVRFWLSRNVQWKKGFTFHA AQFFIYAIIIGTIGSILNNAIEDYNLRFISSGVIDFICTSLIALILTIKLFLIINQFE KAQVNKGRDVTSTRILARVIKITIIVAIVLLYGEHFGMSLSGLLTFGGIGGIAVGMAG KDVLSNFFSGIMLYFDRPFSIGDWIRSPDRNIEGTVAEIGWRITRINTFDHRPLYVPN SVFSSISVENPGRMTNRRIKTVIGLRYEDADKIGLIVDAIRNMLQAHRDIDQKQTLLV YFNEFADSSLNIMVYCFTKTTVWQEWLAVQQDVYLKIIAIVQENGADFAFPSQTLYID DPEAAPATK" misc_feature 1756994..1757776 /gene="ynaI" /locus_tag="STM1663" /note="Small-conductance mechanosensitive channel [Cell wall/membrane/envelope biogenesis]; Region: MscS; COG0668" /db_xref="CDD:440432" gene complement(1757883..1758485) /locus_tag="STM1664" /db_xref="GeneID:1253182" CDS complement(1757883..1758485) /locus_tag="STM1664" /note="similar to E. coli orf, hypothetical protein (AAC74516.1); Blastp hit to AAC74516.1 (178 aa), 28% identity in aa 8 - 169" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_460623.1" /db_xref="GeneID:1253182" /translation="MTKKVNLSTTAGADVSTINEAVSQRIKQFRSQKKMSLDELARRS GVSKGMLVEIEGCKANPSIALLCKIAAAMGVSVADVVNVASEPMVHLIDRDAIPVLWR GEKGGSAKLMAGTSGPDMLELWQWIMHPGEQFESAGHPADTCELLFVNQGTLTLTVDG RRFIIREGCSAVARTDMPHAYVNDTNEVLEFTMTVNEKSR" misc_feature complement(1758198..1758440) /locus_tag="STM1664" /note="Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Region: HipB; COG1396" /db_xref="CDD:441006" misc_feature complement(1757901..1758110) /locus_tag="STM1664" /note="Cupin domain; Region: Cupin_2; pfam07883" /db_xref="CDD:462300" gene 1758522..1759215 /locus_tag="STM1665" /db_xref="GeneID:1253183" regulatory 1758522..1758527 /regulatory_class="ribosome_binding_site" /locus_tag="STM1665" /note="putative RBS for STM1665; RegulonDB:STMS1H001855" CDS 1758529..1759215 /locus_tag="STM1665" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460624.1" /db_xref="GeneID:1253183" /translation="MSSMLPSISPELARIAPGFRALSINVIAAPIRDAQVGEIALKEA CQAVINGQPAWAQAHIDAWNTVLKAFGAKPKRTPCSAEALRKRVLKDGTMAALDPVVD LYNAVSLRYAVPVGGENSAAYCGSPRLVFADGSETFDTLKEGQPATESPEPGEVIWRD DRGVTCRRWNWRQGVRTRLSASDKAMWFILESLPEMPVDELYAAGNMLTDGLEKMMPG LRFESTLIGV" misc_feature 1758538..1759206 /locus_tag="STM1665" /note="B3/B4 domain (DNA/RNA-binding domain of Phe-tRNA-synthetase) [General function prediction only]; Region: B3/B4; COG3382" /db_xref="CDD:442609" gene 1759243..1759581 /locus_tag="STM1666" /note="pseudogene; in-frame stop following codon 24" /pseudo /db_xref="GeneID:1253184" gene complement(1759687..1760244) /locus_tag="STM1667" /db_xref="GeneID:1253185" CDS complement(1759687..1760244) /locus_tag="STM1667" /note="similar to E. coli thiol peroxidase (AAC74406.1); Blastp hit to AAC74406.1 (168 aa), 30% identity in aa 45 - 159" /codon_start=1 /transl_table=11 /product="putative thiol peroxidase" /protein_id="NP_460625.1" /db_xref="GeneID:1253185" /translation="MAKIIQMLKGEVFMTPTTTQDYISLGQEHAVTFGKTQLTLKPGI LAEGEPLPCTKGLVSHNLLPGYCIPGIKKQIIVVPSLDTPVCEWQVKDYSDRLKSAGS HSTRAVYVLSMDTPFAQARFIREHDIHPGIIFVSDYACRQFLDNSGLKINELSIFARA LIECDENNVVTRVSVPRDITHLPVY" misc_feature complement(1759690..1760031) /locus_tag="STM1667" /note="The thioredoxin (TRX)-like superfamily is a large, diverse group of proteins containing a TRX fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox...; Region: Protein Disulfide Oxidoreductases and Other Proteins with a Thioredoxin fold; cl00388" /db_xref="CDD:469754" gene complement(1760343..1761179) /locus_tag="STM1668" /db_xref="GeneID:1253186" CDS complement(1760343..1761173) /locus_tag="STM1668" /codon_start=1 /transl_table=11 /product="putative outer membrane or exported protein" /protein_id="NP_460626.1" /db_xref="GeneID:1253186" /translation="MRMSKHNLIIYSLLLAAAPISVLADSSTTSAATVGMFSPPTAPS VGHRPGTPRDSYELQFNGLGFFIEKYTPFPGMTIARNARNVGIRDPDNNYQSAETFTT VCTYYQINKDNSQHILKREKPCEHKFNIQKEHRGSKIKLEIYNETDMASASGYTPVPS VSEFQYIETETISNTPSPDLTVMSIDKSVLSPGESATITTIVKDIDGNPVNEVHINKT VARENLKGLWDYGPLKKENVPGKYTQVITYRGHSNERIDISFKYAMSFTKEISIRGRL " misc_feature complement(1760349..1760768) /locus_tag="STM1668" /note="Zinc-regulated secreted antivirulence protein C-terminal domain; Region: ZirS_C; pfam16583" /db_xref="CDD:406884" regulatory complement(1761174..1761179) /regulatory_class="ribosome_binding_site" /locus_tag="STM1668" /note="putative RBS for STM1668; RegulonDB:STMS1H001857" gene complement(1761194..1763184) /locus_tag="STM1669" /db_xref="GeneID:1253187" CDS complement(1761194..1763176) /locus_tag="STM1669" /note="homology to invasin C of Yersinia; similar to E. coli putative factor (AAC74304.1); Blastp hit to AAC74304.1 (417 aa), 30% identity in aa 38 - 403" /codon_start=1 /transl_table=11 /product="invasin-like protein; intimin" /protein_id="NP_460627.1" /db_xref="GeneID:1253187" /translation="MVFSKKPITKYITWAIVTSQIPLPVIADSDNEIQSWIAGTASSI SPHLQEGTLEDYAKGKIKALPGQAANHLVNEGIKSAFPEIIFRGGVNLEDGAKYRSSE FDMFIPVQETTSSLLFGQLGFRDHDNSSFDGRTYVNVGMGYRQEVNGWLLGVNTFLDA DIRYSHLRGGIGGEVYKDSLAFSGNYYFPLTGWKMSAAHELHDERPAYGFDLRTKGTL PDFPWFSGELTYEQYYGDKVDLLGNGTLSRNPRAAGAALVWNPVPLLEVRAGYRDAGN GGSQAEGGLRVNYSFGTPLHEQLDYRNVGAPSNTTNRRAFVDRNYDIVMAYREQASKI RITAMPVSGLSGTLVTLMATVDSRYPVEKVEWSGDAELLAGLQLQGSLGSGLILPQLP LTATDGQEYSLYLTVTDSRGTRVTSERIPVRVTQDETSFRSWINVINDDVQVEDGNFV INTPLPAGEEGKVIEWHYVRERSEEEWASLKPRHIKYQSDTPGLAFKALGGTERDGHW VERVLVTHIGDDARSLKLHIEASGPDDKHPVKGTVLLQAQSDSIAQKVTSVEVLFTPG TEEANGSVTAPVVGTEMRARTLCVNNTDCTDAFNYQWEISDEMKSWQSVPGATKATWL LPYSLNGESLQNKYIRVRIISDKGNAKGNTATSDAN" misc_feature complement(1762214..1763062) /locus_tag="STM1669" /note="Inverse autotransporter, beta-domain; Region: IAT_beta; pfam11924" /db_xref="CDD:432192" misc_feature complement(1761254..>1761514) /locus_tag="STM1669" /note="ZirU family protein; Region: ZirU_fam; NF040485" /db_xref="CDD:468510" regulatory complement(1763179..1763184) /regulatory_class="ribosome_binding_site" /locus_tag="STM1669" /note="putative RBS for STM1669; RegulonDB:STMS1H001858" gene complement(1763251..1764101) /locus_tag="STM1670" /db_xref="GeneID:1253188" CDS complement(1763251..1764096) /locus_tag="STM1670" /codon_start=1 /transl_table=11 /product="putative serine/threonine protein kinase" /protein_id="NP_460628.1" /db_xref="GeneID:1253188" /translation="MYFKRSLLTLAICASVVSVEAVANTRANDMASSATPASVGHRPV ATTNAKKIEVSGELTTGSTLQIADVFIRDEDGDPLSLDKMNNADDIKWYLVDNEAADP SGTPAATGTAFTIPADAGGKKIKIVYRIKTATGTPDSAFLPATVLLTSASSGVSGDSA ADGTISNKLRSVTINVVNESGKPTDELNGTNDANTPVVGGTLEAVLECAATAAAECEV SNYNFTWQMADAGTPDKFTDLNNTNAEKHKYIIKGTEQNKLFRVHVTPKTTKATPENK RAIRR" misc_feature complement(1763302..1764012) /locus_tag="STM1670" /note="ZirU family protein; Region: ZirU_fam; NF040485" /db_xref="CDD:468510" regulatory complement(1764096..1764101) /regulatory_class="ribosome_binding_site" /locus_tag="STM1670" /note="putative RBS for STM1670; RegulonDB:STMS1H001859" gene 1764383..1765247 /locus_tag="STM1671" /db_xref="GeneID:1253189" regulatory 1764383..1764388 /regulatory_class="ribosome_binding_site" /locus_tag="STM1671" /note="putative RBS for STM1671; RegulonDB:STMS1H001860" CDS 1764390..1765247 /locus_tag="STM1671" /note="similar to E. coli putative ARAC-type regulatory protein (AAC73403.1); Blastp hit to AAC73403.1 (239 aa), 35% identity in aa 12 - 210" /codon_start=1 /transl_table=11 /product="putative bacterial regulatory helix-turn-helix protein, araC family" /protein_id="NP_460629.1" /db_xref="GeneID:1253189" /translation="MMMKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFK EKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFRMGFDSVQSYSREFKKTFGVNPN NYRKADFWDLRNLRPPYWLDCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPI KWKIIHETLRTWGENVYCLSSFKPDNTKDQVIAVSSFFGMEHNSVDGGKIPMSRVIKC GKYAKFHFVGHKEQYQQFSNTIYMCILPKLNLIRREGEDIEYFHLASVQKQQNNESIV DLYYYIPVL" misc_feature 1764393..1765241 /locus_tag="STM1671" /note="MDR efflux pump AcrAB transcriptional activator RobA; Region: PRK15121" /db_xref="CDD:185076" gene 1765638..1766747 /locus_tag="STM1672" /db_xref="GeneID:2673745" CDS 1765638..1766747 /locus_tag="STM1672" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_448089.1" /db_xref="GeneID:2673745" /translation="MYIIRGDIIHIFEIRADDMYTTIRNTALAMVACFSYIAHASTHP PLIITRGAGGDASGATVIHDNWRHGTPDLVNLTDIPIDKIRPEKYSCILIIGQGAIKE MLLANNASAILSGKTVGLYSHLIDQNTLRLLRQLQNKVRFNLFFTRSQITLLKLRNIS EYNFLSSKVNNVWGQDSLAIETVAPDRGNIPEKALPLKTTDYVIWLGGNYTTSSGTQR IFTNDQIVVALKPLHNVISSNASIAIMLSPRFFDNSVSKEAKVKRLKAVLNTFSRNRV TFYMSKEMLANLKEFDLPVQLSPSYAELMRMPWASATRHFASVDQYNLFADLIPKVTP FLLEPNDADQALYATDYLNTRRVSLTQNILNHGCD" gene complement(1766961..1767215) /locus_tag="STM1673" /db_xref="GeneID:1253191" CDS complement(1766961..1767215) /locus_tag="STM1673" /note="similar to E. coli orf, hypothetical protein (AAC75872.1); Blastp hit to AAC75872.1 (72 aa), 33% identity in aa 1 - 71" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460631.3" /db_xref="GeneID:1253191" /translation="MPGKREMQKCSLITVLSLSVLMLAGCTTTYTMTTRTGEIIETQG KPEVDTATGMTKYADVYGYHRVMKTSEIVQTTEGASKLDW" misc_feature complement(1766985..1767194) /locus_tag="STM1673" /note="Bacterial protein of unknown function (DUF903); Region: DUF903; cl05512" /db_xref="CDD:471259" gene complement(1767326..1767923) /locus_tag="STM1674" /db_xref="GeneID:1253192" CDS complement(1767326..1767916) /locus_tag="STM1674" /note="similar to E. coli orf, hypothetical protein (AAC77208.1); Blastp hit to AAC77208.1 (84 aa), 46% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="putative AraC family bacterial regulatory helix-turn-helix protein" /protein_id="NP_460632.1" /db_xref="GeneID:1253192" /translation="MTTKHSRTPGRPRQFDPEQAIETAQHLFHSRGYDAVSVADLTKA FGINPPSFYAAFGSKLGLYTRVLKRYRMTDAIPLGALLRHDRPTAKCLIDVLMEAARR YAADPDATGCLVLEGAHCNDKPAREAACEFYIAAENLIRTYVAMRYPQEADRTTDFMG TLMAGLSAKARAGYGLERLQESVLLAGDVLERLLPD" misc_feature complement(1767422..1767886) /locus_tag="STM1674" /note="DNA-binding protein, AcrR family, includes nucleoid occlusion protein SlmA [Transcription]; Region: AcrR; COG1309" /db_xref="CDD:440920" regulatory complement(1767918..1767923) /regulatory_class="ribosome_binding_site" /locus_tag="STM1674" /note="putative RBS for STM1674; RegulonDB:STMS1H001861" gene 1767982..1768707 /locus_tag="STM1675" /db_xref="GeneID:1253193" regulatory 1767982..1767987 /regulatory_class="ribosome_binding_site" /locus_tag="STM1675" /note="putative RBS for STM1675; RegulonDB:STMS1H001862" CDS 1767994..1768707 /locus_tag="STM1675" /note="similar to E. coli putative oxidoreductase (AAC77206.1); Blastp hit to AAC77206.1 (237 aa), 80% identity in aa 1 - 237" /codon_start=1 /transl_table=11 /product="putative short-chain alcohol dehydrogenase" /protein_id="NP_460633.1" /db_xref="GeneID:1253193" /translation="MTLFRNKSVLVLGGSRGIGAAIVRRFSADGASVVFSYAGSREAA EKLATETGSIAIQTDSADRDAVISLVREYGPLDILVVNAGVALFGDALEQDSDAIDRL FRINIHAPYHASVEAARNMPEGGRIIIIGSVNGDRMPVPGMAAYAASKSALQGLARGL ARDFGPRGITINVVQPGPIDTDINPEDGPMKELMHSFMAIKRHGRPEEVAGMVAWLAG PEASFVTGAMHTIDGAFGA" misc_feature 1767994..1768704 /locus_tag="STM1675" /note="SDR family oxidoreductase; Region: PRK12742" /db_xref="CDD:183714" gene complement(1768798..1769672) /locus_tag="STM1676" /db_xref="GeneID:1253194" CDS complement(1768798..1769667) /locus_tag="STM1676" /note="similar to E. coli orf, hypothetical protein (AAC76048.1); Blastp hit to AAC76048.1 (236 aa), 41% identity in aa 2 - 224" /codon_start=1 /transl_table=11 /product="putative aldo/keto reductase family" /protein_id="NP_460634.1" /db_xref="GeneID:1253194" /translation="MEYSILSNNLKMPMVGFGVFKVTDKEECQQSVLSAIRSGYRLID TAAVYGNEDAVGDAVREAIATGLCTREELFITSKLWVQDMANYDLAKAGIEASLKKSG LDYFDLYLLHQAMGDYFSAWRALEDAYEAGKLKAIGVSNFYAHVLANFCETVRITPMV NQVELHPYFAQPAALETMKHYNVQPEAWAPLGGGRHKPYENVMLQGIADAHQKTIAQV VLRWNVQRGVTVIPKSTRQERIEENFAIWDFSLTDNEMAQINALDLGYVGEAVKHFNP EFVRGCLGVKIHD" misc_feature complement(1768879..1769655) /locus_tag="STM1676" /note="the AKR5F family of aldo-keto reductase (AKR); Region: AKR_AKR5F1; cd19133" /db_xref="CDD:381359" misc_feature complement(order(1768939..1768944,1768951..1768953, 1768960..1768977,1769020..1769022,1769056..1769058, 1769086..1769106,1769182..1769184,1769245..1769250, 1769329..1769334,1769434..1769436,1769521..1769526, 1769536..1769538,1769608..1769616)) /locus_tag="STM1676" /note="active site" /db_xref="CDD:381359" misc_feature complement(order(1769332..1769334,1769434..1769436, 1769521..1769523,1769536..1769538)) /locus_tag="STM1676" /note="catalytic tetrad [active]" /db_xref="CDD:381359" regulatory complement(1769667..1769672) /regulatory_class="ribosome_binding_site" /locus_tag="STM1676" /note="putative RBS for STM1676; RegulonDB:STMS1H001863" gene complement(1769941..1770851) /locus_tag="STM1677" /db_xref="GeneID:1253195" CDS complement(1769941..1770846) /locus_tag="STM1677" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC76546.1); Blastp hit to AAC76546.1 (323 aa), 35% identity in aa 25 - 313" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_460635.1" /db_xref="GeneID:1253195" /translation="MDKLEAMQVYVCVVDTHSFIRAAEVLGVPRSTVSRVVKELESWL KIQLLQRTTRKLSVTAEGRRYYEECKRVLADIAAMESSFPGRAAQPKGRFKVGMPQSL ARHCIIPTLPAFLRQYPELELILCSSDSVEDIILQGYDCVIRAGRIDDSTTLVARPLA SFNWVIAASPTYIERYGSPENLDDLQKHHAVGYLNHRTGRTIDWFFTREGKDYAIRVQ ETLVVDDTDAYIQAGIQGLGLIRVASYLVAPYLHSGALVTCMDNHSYDLPLALVYPQN RFLPPAVRAFYDWCKTALSQPAPLR" misc_feature complement(1770658..1770837) /locus_tag="STM1677" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature complement(1769977..1770573) /locus_tag="STM1677" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472" /db_xref="CDD:176161" misc_feature complement(order(1770040..1770042,1770118..1770120, 1770169..1770171,1770361..1770363,1770367..1770369, 1770412..1770414,1770529..1770531,1770541..1770543)) /locus_tag="STM1677" /note="putative effector binding pocket [active]" /db_xref="CDD:176161" misc_feature complement(order(1770142..1770144,1770151..1770156, 1770175..1770189,1770280..1770282,1770466..1770486, 1770490..1770492,1770502..1770504,1770511..1770516, 1770520..1770525,1770535..1770540)) /locus_tag="STM1677" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176161" regulatory complement(1770846..1770851) /regulatory_class="ribosome_binding_site" /locus_tag="STM1677" /note="putative RBS for STM1677; RegulonDB:STMS1H001864" gene 1770959..1771894 /locus_tag="STM1678" /db_xref="GeneID:1253196" regulatory 1770959..1770964 /regulatory_class="ribosome_binding_site" /locus_tag="STM1678" /note="putative RBS for STM1678; RegulonDB:STMS1H001865" CDS 1770965..1771894 /locus_tag="STM1678" /codon_start=1 /transl_table=11 /product="putative 2'-hydroxyisoflavone reductase" /protein_id="NP_460636.1" /db_xref="GeneID:1253196" /translation="MKQSNNQVGEKVLVLGAGQLGASVLASLVPAVTQRNGSVSVIVS GRSRDKQSKRRSSIHQQLADAGARFIPVDIAGSSVAALKDQFHGFDTIINCMGFVAGA GTQIKITRAVLEAGVKRYFPWQFGVNYDVVGKGSGQPVWDEQYDVRTLLREQNVTEWV IVSTGIFTSFLFEPAFGVVNLAKKTINALGGWEMQVTVTSPADIGRLTTEIYLHQPRI TNEVVFVAGETTSYAKLAETVERVTQQTFTRGVLTLPDLQEQLRLHPHDPMLRYRVAF ARGDGMWWPMSDTWNAQHHLPTQDIAAWLKTQQ" misc_feature 1770995..1771876 /locus_tag="STM1678" /note="phenylcoumaran benzylic ether reductase (PCBER) like, atypical (a) SDRs; Region: PCBER_SDR_a; cd05259" /db_xref="CDD:187569" misc_feature order(1771010..1771012,1771016..1771018,1771022..1771024, 1771100..1771102,1771247..1771255,1771265..1771270, 1771331..1771342,1771394..1771396,1771457..1771465, 1771475..1771477) /locus_tag="STM1678" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187569" misc_feature 1771394..1771396 /locus_tag="STM1678" /note="active site lysine" /db_xref="CDD:187569" gene complement(1771991..1773615) /gene="mppA" /locus_tag="STM1679" /db_xref="GeneID:1253197" CDS complement(1771991..1773604) /gene="mppA" /locus_tag="STM1679" /note="also negative regulator of mulitple antibiotic resistance; similar to E. coli putative transport periplasmic protein (AAC74411.1); Blastp hit to AAC74411.1 (544 aa), 92% identity in aa 8 - 544" /codon_start=1 /transl_table=11 /product="periplasmic murein tripeptide transport protein" /protein_id="NP_460637.1" /db_xref="GeneID:1253197" /translation="MRHSVSVTCCALLVSSFSLAYAADVPGGTVLAEKQELVRHIKDE PASLDPAKAVGLPEIQVIRDLFEGLVNQNEKGEIIPGVASQWKSNDNRIWTFTLRDDA QWADGTPVTAQDFVYSWQRLVDPKTLSPFAWFAALAGITNAQAIIDGKVTPDQLGVSA VDAHTLRVQLDKPLPWFASLTASFAFYPVQKANVESGKDWMKPGKLIGNGAYVLKERV VNEKLVVVPNTHYWDNAKTVLQKVTFLPINQESAATKRYLAGDIDITESFPKNMYQKL LKDIPGQVYTPPQLGTYYYAFNTQKGPTADSRVRLALSMTIDRRLMAEKVLGTGEKPA WHFTPDVTAGFTPDPSPFEQMSQEELNAQAKTLLRAAGYGSQKPLKLTLLYNTSENHQ KIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNTGNFDVIRASWVGDYNEPSTFLSLL TSTHTGNISRFTNPTYDKILTQATMENTAEARNADYNAAEKILTEQAPIAPIYQYTNG RLIKPWVKGYPITNPEDVAYSRTMYIVKH" misc_feature complement(1771997..1773604) /gene="mppA" /locus_tag="STM1679" /note="ABC-type oligopeptide transport system, periplasmic component [Amino acid transport and metabolism]; Region: OppA; COG4166" /db_xref="CDD:443327" regulatory complement(1773610..1773615) /regulatory_class="ribosome_binding_site" /gene="mppA" /locus_tag="STM1679" /note="putative RBS for mppA; RegulonDB:STMS1H001866" gene 1773794..1774522 /gene="ycjI" /locus_tag="STM1680" /db_xref="GeneID:1253198" CDS 1773794..1774522 /gene="ycjI" /locus_tag="STM1680" /note="similar to E. coli putative carboxypeptidase (AAC74408.1); Blastp hit to AAC74408.1 (262 aa), 90% identity in aa 21 - 262" /codon_start=1 /transl_table=11 /product="putative carboxypeptidase" /protein_id="NP_460638.1" /db_xref="GeneID:1253198" /translation="MTVTRPRAERGAFPPGTEHYGRSLLGAPLIWFPAPAVNRESGLI LAGTHGDETSSVVTLSCALRTLNPTLRRHHVVLAVNPDGCQLGLRANANGIDLNRNFP AANWKAGETVYRWNSRAQERDVVLLTGDHPGSEPETQALCQLIHRLQPAWVVSFHDPL ACIEDPRRSELGEWLADAFALPLVTSVGYETPGSFGSWCADLNLHCITAEFPPVSADE ASEKYLLAMSNLLRWHPKDGVDPS" misc_feature 1773794..1774504 /gene="ycjI" /locus_tag="STM1680" /note="murein tripeptide amidase MpaA; Region: PRK10602" /db_xref="CDD:182582" misc_feature order(1773938..1773940,1773947..1773949,1774058..1774060, 1774085..1774090,1774262..1774267,1774280..1774282, 1774352..1774354,1774421..1774423) /gene="ycjI" /locus_tag="STM1680" /note="active site" /db_xref="CDD:349475" gene complement(1774497..1775473) /gene="ycjG" /locus_tag="STM1681" /db_xref="GeneID:1253199" CDS complement(1774497..1775462) /gene="ycjG" /locus_tag="STM1681" /EC_number="5.5.-.-" /note="similar to E. coli putative muconate cycloisomerase I (AAC74407.1); Blastp hit to AAC74407.1 (335 aa), 85% identity in aa 15 - 335; putative chloromuconate cycloisomerase" /codon_start=1 /transl_table=11 /product="muconate cycloisomerase" /protein_id="NP_460639.1" /db_xref="GeneID:1253199" /translation="MRSVKVYEETWPLHTPFVIARGSRSEAHVVVVELEEEDVKGIGE CTPYPRYGESDASVMAQIMSIVPQLENGLTREALQKLLPAGAARNAVDSALWDLQARQ RQQSLAGLLGVTLAPVFTTAQTVVIGTPEQMAASAAALWEKGATLLKIKLDARLISER MVAIRSAVPEATLIVDANESWRPEGLAARCQLLADLNVAMLEQPLPAQDDAALENFIH PLPICADESCHTRSSLKALTGRYDMINIKLDKTGGLTEALALATEAREQGFGLMLGCM LCTSRAISAALPLMPQVSFADLDGPTWLAVDVEPALRFTTGQLHL" misc_feature complement(1774500..1775462) /gene="ycjG" /locus_tag="STM1681" /note="L-Ala-D/L-Glu epimerase; Provisional; Region: PRK15129" /db_xref="CDD:185083" regulatory complement(1775468..1775473) /regulatory_class="ribosome_binding_site" /gene="ycjG" /locus_tag="STM1681" /note="putative RBS for ycjG; RegulonDB:STMS1H001867" gene 1775565..1776084 /gene="tpx" /locus_tag="STM1682" /db_xref="GeneID:1253200" regulatory 1775565..1775570 /regulatory_class="ribosome_binding_site" /gene="tpx" /locus_tag="STM1682" /note="putative RBS for tpx; RegulonDB:STMS1H001868" CDS 1775578..1776084 /gene="tpx" /locus_tag="STM1682" /EC_number="1.11.1.-" /note="similar to E. coli thiol peroxidase (AAC74406.1); Blastp hit to AAC74406.1 (168 aa), 88% identity in aa 1 - 168" /codon_start=1 /transl_table=11 /product="thiol peroxidase" /protein_id="NP_460640.1" /db_xref="GeneID:1253200" /translation="MSQTVHFQGNPVTVANVIPQAGSKAQAFTLVAKDLSDVSLSQYA GKRKVLNIFPSIDTGVCAASVRKFNQLATEVENTVVLCVSADLPFAQSRFCGAEGLSN VITLSTLRNNEFLKNYGVEIVDGPLKGLAARAVIVLDENDNVIFSQLVDEITHEPDYD AALNVLKA" misc_feature 1775581..1776081 /gene="tpx" /locus_tag="STM1682" /note="thiol peroxidase; Region: tpx; PRK00522" /db_xref="CDD:179055" misc_feature order(1775740..1775742,1775746..1775748,1775833..1775838, 1775854..1775856,1775902..1775904,1775959..1775964) /gene="tpx" /locus_tag="STM1682" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:239312" misc_feature order(1775749..1775751,1775758..1775760,1775974..1775976) /gene="tpx" /locus_tag="STM1682" /note="catalytic triad [active]" /db_xref="CDD:239312" misc_feature order(1775758..1775760,1775860..1775862) /gene="tpx" /locus_tag="STM1682" /note="peroxidatic and resolving cysteines [active]" /db_xref="CDD:239312" gene complement(1776174..1777837) /gene="tyrR" /locus_tag="STM1683" /db_xref="GeneID:1253201" CDS complement(1776174..1777715) /gene="tyrR" /locus_tag="STM1683" /note="contains intrinsic ATPase and phosphatase activity (EBP family); transcriptional regulatory protein TYRR. (SW:TYRR_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator of aromatic amino acid biosynthesis genes (aroF, aroG, tyrA) and aromatic amino acid transport" /protein_id="NP_460641.1" /db_xref="GeneID:1253201" /translation="MRLEVFCEDRLGLTRELLDLLVLRSIDLRGIEIDPIGRIYLNFA ELEFTDFSSLMAEIRRISGVTDVRTVPWMPSEREHLALSALLEALPEPVLSLDMKSKV EMANPASCQLFAQSQERMRHHTAAQLINGFNFQRWLDGNPQSSHNEHVVINGQNFLME ITPVHLQNENDEYVLTGAVVMLRSTIRMGQQLQNLSTQDLSAFSQIIAVSAKMKHVVE QARKLAMLSAPLLITGDTGTGKDLFAYACHQASPRSAKPYLALNCASIPEDAVESELF GHAPEGKKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEIHVDVR VICATQKNLVELVQKGLFREDLYYRLNVLTLNLPPLRDCPQDIMPLTELFVARFADEQ GVPRPKLSADLSTVLTRYGWPGNVRQLKNAIYRALTQLEGYELRPQDILLPDYDAATV AVGEDAMEGSLDDITSRFERSVLTQLYRSYPSTRKLAKRLGVSHTAIANKLREYGLSQ KKGEE" misc_feature complement(1776177..1777715) /gene="tyrR" /locus_tag="STM1683" /note="transcriptional regulator TyrR; Region: PRK10820" /db_xref="CDD:236769" regulatory complement(1777725..1777730) /regulatory_class="ribosome_binding_site" /gene="tyrR" /locus_tag="STM1683" /note="putative RBS for tyrR; RegulonDB:STMS1H001869" protein_bind complement(1777782..1777804) /gene="tyrR" /locus_tag="STM1683" /note="putative binding site for TyrR, RegulonDB: STMS1H000385" /bound_moiety="TyrR" regulatory complement(1777810..1777818) /regulatory_class="minus_10_signal" /gene="tyrR" /locus_tag="STM1683" /note="putative -10_signal for tyrR; RegulonDB:STMLTH004497" regulatory complement(1777829..1777837) /regulatory_class="minus_35_signal" /gene="tyrR" /locus_tag="STM1683" /note="putative -35_signal for tyrR; RegulonDB:STMLTH004497" gene complement(1777863..1778940) /gene="ycjF" /locus_tag="STM1684" /db_xref="GeneID:1253202" CDS complement(1777863..1778924) /gene="ycjF" /locus_tag="STM1684" /note="similar to E. coli orf, hypothetical protein (AAC74404.1); Blastp hit to AAC74404.1 (353 aa), 88% identity in aa 1 - 353" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460642.1" /db_xref="GeneID:1253202" /translation="MSEPLKPRIDFAEPLKEEPTSAFKAQQTFSEAESRTFAPAAIDE RPEDEGAAEAAVDAALRPKRSLWRKMVMGGLALFGASVVGQGVQWTMNAWQTQDWVAL GGCAAGALIVGAGVGSVVTEWRRLWRLRQRAHERDEARELLHSHSVGKGRAFCEKLAQ QAGIDQSHPALQRWYAAIHETQNDREIVGLYANLVQPVLDAQARREISRFAAESTLMI AVSPLALVDMAFIAWRNLRLINRIATLYGIELGYYSRLRLFRLVLLNIAFAGASELVR EVGMDWMSQDLAARLSTRAAQGIGAGLLTARLGIKAMELCRPLPWIDNDKPRLGDFRR QLIGQLKETLQKSKSSPEK" misc_feature complement(1777902..1778747) /gene="ycjF" /locus_tag="STM1684" /note="Domain of unknown function (DUF697); Region: DUF697; cl42452" /db_xref="CDD:478211" gene complement(1778921..1780337) /gene="ycjX" /locus_tag="STM1685" /db_xref="GeneID:1253203" CDS complement(1778921..1780324) /gene="ycjX" /locus_tag="STM1685" /note="similar to E. coli putative EC 2.1 enzymes (AAC74403.1); Blastp hit to AAC74403.1 (465 aa), 93% identity in aa 1 - 465" /codon_start=1 /transl_table=11 /product="putative ATPase" /protein_id="NP_460643.3" /db_xref="GeneID:1253203" /translation="MSMKRLKTEFNALVNRGVDRHLRLAVTGLSRSGKTAFITAMVNQ LLNVHAGARLPLLSAVREERLLGVKRVPQRDFGIPRFTYDEGILQLYGNPPAWPTPTR GVSEIRLALRYRSNDSLLRHFKDTSTLYLEIVDYPGEWLLDLPMLAQDYLSWSRQMNG LLQGQRAEWAAKWRQLCDGLDPLAPADENRLAEIAAAWTDYLHQCKSQGLHFIQPGRF VLPGDMAGAPALQFFPWPDVDAFGESKLAQADKQTNAGMLRERFNYYCEKVVKGFYKN HFLRFDRQIVLVDCLQPLNSGPQAFNDMRLALTQLMQSFHYGQRTLFRRLFSPVIDKL LFAATKADHVTLDQHANMVALLQQLIQDAWQNAAFEGISMDCLGLASVQATTSGVIEV NGEKIPALRGNRLSDGAPLTVYPGEVPSRLPGQAFWDSQGFQFEAFRPQVMDVDKPLP HIRLDAALEFLIGDKLR" misc_feature complement(1778924..1780318) /gene="ycjX" /locus_tag="STM1685" /note="Ras-like GTP-binding stress-induced protein YcjX, DUF463 family [Signal transduction mechanisms]; Region: YcjX; COG3106" /db_xref="CDD:442340" regulatory complement(1778935..1778940) /regulatory_class="ribosome_binding_site" /gene="ycjF" /locus_tag="STM1684" /note="putative RBS for ycjF; RegulonDB:STMS1H001870" regulatory complement(1780332..1780337) /regulatory_class="ribosome_binding_site" /gene="ycjX" /locus_tag="STM1685" /note="putative RBS for ycjX; RegulonDB:STMS1H001871" gene complement(1780467..1780793) /gene="pspE" /locus_tag="STM1686" /db_xref="GeneID:1253204" CDS complement(1780467..1780781) /gene="pspE" /locus_tag="STM1686" /note="similar to E. coli phage shock protein (AAC74390.1); Blastp hit to AAC74390.1 (104 aa), 66% identity in aa 1 - 103" /codon_start=1 /transl_table=11 /product="phage shock protein" /protein_id="NP_460644.1" /db_xref="GeneID:1253204" /translation="MLKKGIFALALFIAMPLYAAEYWIDVRIPEQYQREHIQGAINIP LKEIKSHIETVVPDRNDTVKLYCNSGRQSGMAKQMLLDMGYTHAMNMGGISRLDMPKV KK" misc_feature complement(1780473..1780775) /gene="pspE" /locus_tag="STM1686" /note="phage shock operon rhodanese PspE; Region: phageshock_pspE; TIGR02981" /db_xref="CDD:132026" misc_feature complement(1780581..1780583) /gene="pspE" /locus_tag="STM1686" /note="active site residue [active]" /db_xref="CDD:238089" regulatory complement(1780788..1780793) /regulatory_class="ribosome_binding_site" /gene="pspE" /locus_tag="STM1686" /note="putative RBS for pspE; RegulonDB:STMS1H001872" gene complement(1780857..1781084) /gene="pspD" /locus_tag="STM1687" /db_xref="GeneID:1253205" CDS complement(1780857..1781075) /gene="pspD" /locus_tag="STM1687" /note="similar to E. coli phage shock protein (AAC74389.1); Blastp hit to AAC74389.1 (73 aa), 87% identity in aa 1 - 72" /codon_start=1 /transl_table=11 /product="phage shock protein" /protein_id="NP_460645.1" /db_xref="GeneID:1253205" /translation="MNTRWQRAGQKVKPGFKIAGKLVLLTALRYGPAGVAGWAVKSVA RRPLKMLLAFALEPVLRKAANKISQRYK" misc_feature complement(1780860..1781075) /gene="pspD" /locus_tag="STM1687" /note="phage shock protein PspD; Region: PRK10497" /db_xref="CDD:182498" regulatory complement(1781079..1781084) /regulatory_class="ribosome_binding_site" /gene="pspD" /locus_tag="STM1687" /note="putative RBS for pspD; RegulonDB:STMS1H001873" gene complement(1781098..1781472) /gene="pspC" /locus_tag="STM1688" /db_xref="GeneID:1253206" CDS complement(1781098..1781457) /gene="pspC" /locus_tag="STM1688" /note="regulatory gene; activates expression of psp operon with PspB; similar to E. coli phage shock protein: activates phage shock-protein expression (AAC74388.1); Blastp hit to AAC74388.1 (119 aa), 84% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="phage shock protein" /protein_id="NP_460646.1" /db_xref="GeneID:1253206" /translation="MGGINLNKKLWRMPQKGMVRGVCAGIADYLDVPVKLVRILVVLS IFFGLAFFTVVAYIVLSFVLDPMPDNLAAGKPQPTSGELLDTVDRELAAGEKRLREME RYVTSDTFTLRSRFRQL" misc_feature complement(1781101..1781454) /gene="pspC" /locus_tag="STM1688" /note="envelope stress response membrane protein PspC; Region: PRK10697" /db_xref="CDD:182656" gene complement(1781457..1781692) /gene="pspB" /locus_tag="STM1689" /db_xref="GeneID:1253207" CDS complement(1781457..1781681) /gene="pspB" /locus_tag="STM1689" /note="regulatory gene; activates expression of psp operon with PspC; similar to E. coli phage shock protein (AAC74387.1); Blastp hit to AAC74387.1 (74 aa), 89% identity in aa 1 - 74" /codon_start=1 /transl_table=11 /product="phage shock protein" /protein_id="NP_460647.1" /db_xref="GeneID:1253207" /translation="MSALFLAIPLTIFVLFVLPIWLWLHYSNRAGRGELSQSEQQRLL QLTDDAQRMRERIQALEDILDAEHPNWRER" misc_feature complement(1781460..1781681) /gene="pspB" /locus_tag="STM1689" /note="envelope stress response membrane protein PspB; Region: pspB; PRK09458" /db_xref="CDD:236526" regulatory complement(1781467..1781472) /regulatory_class="ribosome_binding_site" /gene="pspB" /locus_tag="STM1689" /note="putative RBS for pspC; RegulonDB:STMS1H001874" regulatory complement(1781687..1781692) /regulatory_class="ribosome_binding_site" /gene="pspB" /locus_tag="STM1689" /note="putative RBS for pspB; RegulonDB:STMS1H001875" gene complement(1781741..1782421) /gene="pspA" /locus_tag="STM1690" /db_xref="GeneID:1253208" CDS complement(1781741..1782409) /gene="pspA" /locus_tag="STM1690" /note="negative regulatory gene for the psp opreon; similar to E. coli phage shock protein, inner membrane protein (AAC74386.1); Blastp hit to AAC74386.1 (222 aa), 91% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="phage shock protein" /protein_id="NP_460648.1" /db_xref="GeneID:1253208" /translation="MGIFSRFADIVNANINALLEKAEDPQKLVRLMIQEMEDTLVEVR SNSARALAEKKQLSRRIEQATAQQIEWQEKAELALRKDKDDLARAALIEKQKLTDLIA TLEQEVTLVDDTLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGK LDEAMARFESFERRIDQMEAEAESHRFGKQQSLDQQFANLKADDEISEQLAQLKAKMK QDNQ" misc_feature complement(1781744..1782409) /gene="pspA" /locus_tag="STM1690" /note="phage shock protein PspA; Provisional; Region: PRK10698" /db_xref="CDD:182657" regulatory complement(1782416..1782421) /regulatory_class="ribosome_binding_site" /gene="pspA" /locus_tag="STM1690" /note="putative RBS for pspA; RegulonDB:STMS1H001876" gene 1782565..1783560 /gene="pspF" /locus_tag="STM1691" /db_xref="GeneID:1253209" regulatory 1782565..1782570 /regulatory_class="ribosome_binding_site" /gene="pspF" /locus_tag="STM1691" /note="putative RBS for pspF; RegulonDB:STMS1H001877" CDS 1782580..1783560 /gene="pspF" /locus_tag="STM1691" /note="similar to E. coli psp operon transcriptional activator (AAC74385.1); Blastp hit to AAC74385.1 (330 aa), 86% identity in aa 6 - 330" /codon_start=1 /transl_table=11 /product="transcription activator" /protein_id="NP_460649.1" /db_xref="GeneID:1253209" /translation="MAEFKDNLLGEANRFLEVLEQVSRLAPLDKPVLIIGERGTGKEL IANRLHYLSSRWQGPLISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGG TLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMVKEGT FRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELRLPLFPGFTDRAKETLL HYAWPGNVRELKNVVERSVYRHGSSEQPLDEIVIDPFQRHPAEPPAPALPAASVTPDL PLKLREFQLQQEKALLQRSLQQAKFNQKRAADLLALTYHQFRALLKKHQL" misc_feature 1782580..1783557 /gene="pspF" /locus_tag="STM1691" /note="phage shock protein operon transcriptional activator; Provisional; Region: pspF; PRK11608" /db_xref="CDD:236936" gene 1783672..1785321 /gene="sapA" /locus_tag="STM1692" /db_xref="GeneID:1253210" CDS 1783672..1785321 /gene="sapA" /locus_tag="STM1692" /note="periplasm; peptide transport periplasmic protein SAPA precursor. (SW:SAPA_SALTY)" /codon_start=1 /transl_table=11 /product="ABC superfamily peptide transport protein" /protein_id="NP_460650.1" /db_xref="GeneID:1253210" /translation="MRLVLSSLIVIAGLLSSQATAATAPEQTASADIRDSGFVYCVSG QVNTFNPQKASSGLIVDTLAAQLYDRLLDVDPYTYRLVPELAESWEVLDNGATYRFHL RRDVSFQKTAWFTPTRKLNADDVVFTFQRIFDRRHPWHNINGSSFPYFDSLQFADNVK SVRKLDNNTVEFRLTQPDASFLWHLATHYASVMSAEYAAQLSRKDRQELLDRQPVGTG PFQLSEYRAGQFIRLQRHDGFWRGKPLMPQVVVDLGSGGTGRLSKLLTGECDVLAWPA ASQLTILRDDPRLRLTLRPGMNIAYLAFNTDKPPLNNPAVRHALALSINNQRLMQSIY YGTAETAASILPRASWAYDNDAKITEYNPQKSREQLKALGIENLTLHLWVPTSSQAWN PSPLKTAELIQADMAQVGVKVVIVPVEGRFQEARLMDMNHDLTLSGWATDSNDPDSFF RPLLSCAAINSQTNFAHWCNPEFDSVLRKALSSQQLASRIEAYEEAQNILEKELPILP LASSLRLQAYRYDIKGLVLSPFGNASFAGVSREKHEEVKKP" misc_feature 1783672..1785318 /gene="sapA" /locus_tag="STM1692" /note="antimicrobial peptide ABC transporter periplasmic binding protein SapA; Provisional; Region: PRK15109" /db_xref="CDD:185064" gene 1785304..1786283 /gene="sapB" /locus_tag="STM1693" /db_xref="GeneID:1253211" regulatory 1785304..1785309 /regulatory_class="ribosome_binding_site" /gene="sapB" /locus_tag="STM1693" /note="putative RBS for sapB; RegulonDB:STMS1H001878" CDS 1785318..1786283 /gene="sapB" /locus_tag="STM1693" /note="membrane; peptide transport system permease protein SAPB. (SW:SAPB_SALTY)" /codon_start=1 /transl_table=11 /product="ABC superfamily peptide transport protein" /protein_id="NP_460651.1" /db_xref="GeneID:1253211" /translation="MIIFTLRRLLLLLVTLFFLTFIGFSLSYFTPHAPLQGASLWNAW VFWFNGLLHWDFGVSSINGQLISEQLKEVFPATMELCILAFGFALMVGIPVGMLAGVT RSKWPDRFISALALLGFSIPVFWLALLLTLFFSLTLGWLPVSGRFDLLYEVKPVTGFA IIDAWISDSPWRDEMVMSAIRHMVLPVLTLSVAPTTEVIRLMRISTIEVYDQNYVKAA ATRGLSRFTILRRHVLHNALPPVIPRLGLQFSTMLTLAMITEMVFSWPGLGRWLIHAI RQQDYAAISAGVMVIGSLVIVVNVISDILGAMANPLKHKEWYALR" misc_feature 1785381..1786280 /gene="sapB" /locus_tag="STM1693" /note="peptide ABC transporter permease SapB; Region: PRK15110" /db_xref="CDD:185065" misc_feature order(1785585..1785590,1785597..1785602,1785615..1785617, 1785648..1785659,1785663..1785692,1785699..1785704, 1785708..1785710,1785894..1785899,1785903..1785905, 1785909..1785911,1785918..1785923,1785927..1785929, 1785939..1785944,1785951..1785953,1786002..1786004, 1786044..1786049,1786056..1786058,1786077..1786088, 1786095..1786100,1786125..1786130,1786158..1786163, 1786170..1786175,1786179..1786184,1786191..1786196, 1786203..1786208) /gene="sapB" /locus_tag="STM1693" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(1785666..1785710,1786077..1786094) /gene="sapB" /locus_tag="STM1693" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(1785708..1785710,1785879..1785881,1786095..1786097, 1786119..1786121,1786128..1786130,1786158..1786160) /gene="sapB" /locus_tag="STM1693" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(1785954..1785992,1786008..1786013,1786023..1786025) /gene="sapB" /locus_tag="STM1693" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 1786260..1787160 /gene="sapC" /locus_tag="STM1694" /db_xref="GeneID:1253212" regulatory 1786260..1786265 /regulatory_class="ribosome_binding_site" /gene="sapC" /locus_tag="STM1694" /note="putative RBS for sapC; RegulonDB:STMS1H001879" CDS 1786270..1787160 /gene="sapC" /locus_tag="STM1694" /note="membrane; peptide transport system permease protein SAPC. (SW:SAPC_SALTY)" /codon_start=1 /transl_table=11 /product="ABC superfamily peptide transport protein" /protein_id="NP_460652.1" /db_xref="GeneID:1253212" /translation="MPYDSVYSEKRPPGTLRTAWRKFYSDAPAMVGLYGCAGLALLCI FGGWIAPYGIDQQFLGYQLLPPSWSRYGEVSFFLGTDDLGRDVLSRLLSGAAPTVGGA FIVTLAATLCGLVLGVVAGATHGLRSAVLNHILDTLLSIPSLLLAIIVVAFAGPHLSH AMFAVWLALLPRMVRSVYSMVHDELEKEYVIAARLDGATTLNILWFAILPNITAGLVT EITRALSMAILDIAALGFLDLGAQLPSPEWGAMLGDALELIYVAPWTVMLPGAAITLS VLLVNLLGDGIRRAIIAGVE" misc_feature 1786270..1787157 /gene="sapC" /locus_tag="STM1694" /note="peptide ABC transporter permease SapC; Region: PRK15111" /db_xref="CDD:185066" gene 1787152..1788152 /gene="sapD" /locus_tag="STM1695" /db_xref="GeneID:1253213" regulatory 1787152..1787157 /regulatory_class="ribosome_binding_site" /gene="sapC" /locus_tag="STM1694" /note="putative RBS for sapD; RegulonDB:STMS1H001880" CDS 1787160..1788152 /gene="sapD" /locus_tag="STM1695" /note="atp-binding; peptide transport system atp-binding protein SAPD. (SW:SAPD_SALTY)" /codon_start=1 /transl_table=11 /product="ABC superfamily peptide transport protein" /protein_id="NP_460653.1" /db_xref="GeneID:1253213" /translation="MPLLDIRNLTIEFKTSEGWVKAVDRVSMTLSEGEIRGLVGESGS GKSLIAKAICGVAKDNWRVTADRMRFDDIDLLRLSSRERRKLVGHNVSMIFQEPQSCL DPSERVGRQLMQNIPAWTYKGRWWQRLGWRKRRAIELLHRVGIKDHKDAMRSFPYELT DGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLTRLNQNSNTTILLISHD LQMLSQWADKINVLYCGQTVETAPSKDLVTMPHHPYTQALIRAIPDFGSAMPHKSRLN TLPGAIPLLEQLPIGCRLGPRCPYAQRECIITPRLTGAKNHLYACHFPLNMERE" misc_feature 1787160..1788149 /gene="sapD" /locus_tag="STM1695" /note="peptide ABC transporter ATP-binding protein SapD; Region: PRK15093" /db_xref="CDD:185049" gene 1788138..1788960 /gene="sapF" /locus_tag="STM1696" /db_xref="GeneID:1253214" regulatory 1788138..1788143 /regulatory_class="ribosome_binding_site" /gene="sapF" /locus_tag="STM1696" /note="putative RBS for sapF; RegulonDB:STMS1H001881" CDS 1788154..1788960 /gene="sapF" /locus_tag="STM1696" /note="atp-binding; peptide transport system atp-binding protein SAPF. (SW:SAPF_SALTY)" /codon_start=1 /transl_table=11 /product="ABC superfamily peptide transport protein" /protein_id="NP_460654.1" /db_xref="GeneID:1253214" /translation="MVETLLEVRNLSKTFRYRTGWFRRQTVDAVKPLSFTLRERQTLA IIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHYGDYSFRSQRIRMIFQDPSTSLN PRQRISQILDFPLRLNTDLEPEQRRKQIVETMRMVGLLPDHVSYYPHMLAPGQKQRLG LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMMKHIS DQVLVMHQGEVVERGSTADVLASPLHELTRRLIAGHFGEALTADAWRKDR" misc_feature 1788157..1788957 /gene="sapF" /locus_tag="STM1696" /note="peptide ABC transporter ATP-binding protein SapF; Region: PRK15112" /db_xref="CDD:185067" gene complement(1789089..1789692) /locus_tag="STM1697" /db_xref="GeneID:1253215" CDS complement(1789089..1789685) /locus_tag="STM1697" /note="similar to E. coli orf, hypothetical protein (AAC74777.1); Blastp hit to AAC74777.1 (237 aa), 29% identity in aa 17 - 189" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase domain 2" /protein_id="NP_460655.1" /db_xref="GeneID:1253215" /translation="MRYFFMAEPIRAMEGDLLGVEITTHFASSPARPLHPEFVISSWD NSQKRRFLLDLLRTIAAKHGWFLRHGLFCIVNIDRGMAQLVLQDKDIRALLHAMLFVE LQVAEHFSCQDNALIDPLIHALHKQPNPLWLGDLGVGNATAAPLVCGCFSGVKLDRSF FVSQIEKMTFPLLVKHIRRVIVTRSWWGARKTHAICRC" misc_feature complement(1789140..1789682) /locus_tag="STM1697" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cl29561" /db_xref="CDD:453023" regulatory complement(1789687..1789692) /regulatory_class="ribosome_binding_site" /locus_tag="STM1697" /note="putative RBS for STM1697; RegulonDB:STMS1H001882" gene complement(1790151..1791531) /locus_tag="STM1698" /db_xref="GeneID:1253216" CDS complement(1790151..1791524) /locus_tag="STM1698" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460656.1" /db_xref="GeneID:1253216" /translation="MPFTFQIGNHSCQISERYLRDIIDNKREHVFSTCEKFIDFFRNI FTRRSLISDYREIYNLLCQKKEHPDIKGPFSPGPFSKRDEDCTRWRPLLGYIKLIDAS RPETIDKYTVEVLAHQENMLLLQMFYDGVLVTETECSERCVDFLKETMFNYNNGEITL AALGNDNLPPSEAGSNGIYEAFEQRLIDFLTTPATASGYESGAIDQTDASQPAAIEAF INSPEFQKNIRMRDIEKNKIGSGSYGTVYRLHDDFVVKIPVNERGIKVDVNSPEHRNC HPDRVSKYLNMANDDKNFSRSAIMNINGKDVTVLVSKYIQGQEFDVEDEDNYRMAEAL LKSRGVYMHDINILGNILVKEGVLFFVDGDQIVLSQESRQQRSVSLATRQLEEQIKAH HMIKLKRAETEGNTEDVEYYKSLITDLDALIGEEEQTPAPGRRFKLAAPEEGTLVAKV LKDELKK" regulatory complement(1791526..1791531) /regulatory_class="ribosome_binding_site" /locus_tag="STM1698" /note="putative RBS for STM1698; RegulonDB:STMS1H001883" gene 1791559..1791738 /locus_tag="STM1698A" /db_xref="GeneID:1253217" CDS 1791559..1791738 /locus_tag="STM1698A" /codon_start=1 /transl_table=11 /product="putative e6 protein" /protein_id="NP_460657.1" /db_xref="GeneID:1253217" /translation="MQTYKNLICNYCNHLISKIFHIQYYSASINRENLQHLKKKLFLL SICWLKLHVHNIANR" gene 1791708..1792012 /gene="ycjE" /locus_tag="STM1699" /db_xref="GeneID:1253218" regulatory 1791708..1791713 /regulatory_class="ribosome_binding_site" /locus_tag="STM1698A" /note="putative RBS for ycjE; RegulonDB:STMS1H001884" CDS 1791713..1792012 /gene="ycjE" /locus_tag="STM1699" /note="hypothetical 10.4 Kda protein in fabI/envM 5'region. (SW:YCJE_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460658.1" /db_xref="GeneID:1253218" /translation="MSITSLIGEVNHLDEYSGFLQNLYLSGGKRIAIVLAIRPGVSGW MRRTLHQLVYCTVGPVPLDSLICQFGPGECSKSSGTSLPCGFRTSPAGDSGGKIA" gene 1792117..1792918 /gene="fabI" /locus_tag="STM1700" /db_xref="GeneID:1253219" regulatory 1792117..1792122 /regulatory_class="ribosome_binding_site" /gene="fabI" /locus_tag="STM1700" /note="putative RBS for fabI; RegulonDB:STMS1H001885" CDS 1792130..1792918 /gene="fabI" /locus_tag="STM1700" /EC_number="1.3.1.9" /note="enoyl-[acyl-carrier-protein] reductase [NADH]. (SW:FABI_SALTY)" /codon_start=1 /transl_table=11 /product="enoyl-[acyl-carrier-protein] reductase (NADH)" /protein_id="NP_460659.1" /db_xref="GeneID:1253219" /translation="MGFLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL KGRVEEFAAQLGSSIVLPCDVAEDASIDAMFAELGNVWPKFDGFVHSIGFAPGDQLDG DYVNAVTREGFKVAHDISSYSFVAMAKACRTMLNPGSALLTLSYLGAERAIPNYNVMG LAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGIKDFRKMLAHCEAVTPIRR TVTIEDVGNSAAFLCSDLSAGISGEVVHVDGGFSIAAMNELELK" misc_feature 1792130..1792915 /gene="fabI" /locus_tag="STM1700" /note="enoyl-ACP reductase FabI; Region: PRK07984" /db_xref="CDD:181187" misc_feature order(1792166..1792174,1792184..1792189,1792247..1792249, 1792316..1792324,1792400..1792411,1792484..1792486, 1792559..1792567,1792595..1792597,1792616..1792618, 1792694..1792705,1792709..1792720) /gene="fabI" /locus_tag="STM1700" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187630" misc_feature order(1792217..1792219,1792322..1792333,1792340..1792342, 1792436..1792447,1792451..1792459,1792466..1792471, 1792478..1792483,1792490..1792495,1792502..1792504, 1792514..1792516,1792523..1792525,1792571..1792576, 1792580..1792591,1792595..1792600,1792607..1792612, 1792619..1792624,1792631..1792636,1792640..1792657, 1792661..1792666,1792745..1792747,1792754..1792756, 1792772..1792783,1792799..1792801,1792808..1792813, 1792820..1792822,1792835..1792837,1792841..1792879, 1792883..1792888) /gene="fabI" /locus_tag="STM1700" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:187630" misc_feature order(1792322..1792333,1792436..1792447,1792451..1792459, 1792466..1792471,1792478..1792483,1792490..1792495, 1792502..1792504,1792511..1792516,1792523..1792525, 1792571..1792576,1792580..1792588,1792595..1792600, 1792607..1792612,1792619..1792624,1792631..1792636, 1792640..1792648,1792652..1792660) /gene="fabI" /locus_tag="STM1700" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187630" misc_feature order(1792406..1792408,1792412..1792414,1792565..1792567, 1792595..1792597,1792604..1792606,1792616..1792618, 1792715..1792720,1792727..1792729,1792736..1792738) /gene="fabI" /locus_tag="STM1700" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187630" misc_feature order(1792487..1792489,1792565..1792567,1792604..1792606, 1792616..1792618) /gene="fabI" /locus_tag="STM1700" /note="active site" /db_xref="CDD:187630" gene 1793118..1794098 /gene="yciW" /locus_tag="STM1701" /db_xref="GeneID:1253220" CDS 1793118..1794098 /gene="yciW" /locus_tag="STM1701" /note="similar to E. coli putative oxidoreductase (AAC74369.1); Blastp hit to AAC74369.1 (401 aa), 51% identity in aa 27 - 350" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460660.1" /db_xref="GeneID:1253220" /translation="MEQCRKAGKSHWYHETQSTMSSQTPLSLMPEAAYVNDRFLLDLT VAETALTPFESWLKPARQLADVLFPRTVLNDRLHTFSAYERMSTALTAAQVFGVQRLC RYYAARLAPLPGPDASRESNQRLAQITQYARQLAGSPSVINTRAREQLAEVGLTARDT VLINQIIGFIGFQARVAAIFQAFCRLPVRELPGQEMQRFARAARFQNPQTIWRPAASL VEYPPAHTKVRRQYSSSQCQMMAPVLMRDPSSFALLERILTSTLHTASPPSLLPLITL LTSRINGSAACFNEQATQPGAWRRAVITLRQEDDDIARWELEPALTQAIQ" misc_feature <1793349..1793693 /gene="yciW" /locus_tag="STM1701" /note="N-terminal domain of uncharacterized protein YciW (function unknown) [Function unknown]; Region: YciW1; COG4950" /db_xref="CDD:443977" gene 1794158..1796274 /gene="rnb" /locus_tag="STM1702" /db_xref="GeneID:1253221" regulatory 1794158..1794166 /regulatory_class="minus_35_signal" /gene="rnb" /locus_tag="STM1702" /note="putative -35_signal for rnb; RegulonDB:STMLTH004498" regulatory 1794185..1794193 /regulatory_class="minus_10_signal" /gene="rnb" /locus_tag="STM1702" /note="putative -10_signal for rnb; RegulonDB:STMLTH004498" regulatory 1794333..1794338 /regulatory_class="ribosome_binding_site" /gene="rnb" /locus_tag="STM1702" /note="putative RBS for rnb; RegulonDB:STMS1H001886" CDS 1794340..1796274 /gene="rnb" /locus_tag="STM1702" /EC_number="3.1.13.1" /note="mRNA degradation; similar to E. coli RNase II, mRNA degradation (AAC74368.1); Blastp hit to AAC74368.1 (644 aa), 90% identity in aa 1 - 644" /codon_start=1 /transl_table=11 /product="RNase II" /protein_id="NP_460661.1" /db_xref="GeneID:1253221" /translation="MFQDNPLLAQLKQQLHSQTPRAEGVVKATEKGFGFLEVDAQKSY FIPPPQMKKVMHGDRIVAVIHTEKERESAEPEELIEPFLTRFVGKVQGKNDRLSIVPD HPLLKDAIPCRAARGVQHEFKEGDWAVAEMRRHPLKGDRSFYADLTQYITFADDHFVP WWVTLARHNLEKEAPNGVATEMLDEGLERQDLTALNFVTIDSASTEDMDDALYAEELA DGRLQLTVAIADPTAWIAEGSKLDNTAKIRAFTNYLPGFNIPMLPRELSDDLCSLRAN EVRPALACRMIIAADGTIDDDIAFFAATIESKAKLAYDNVSDWLENNGTWQPDNEGIA QQIRLLHRICLSRSEWRHHHALVFKDRPDYRFVLGEKGEVLDIVAEPRRIANRIVEES MIAANLCAARVLRDKLGFGIYNVHTGFDPANADALAALLKTHGLHVDAEEVLTLEGFC KLRRELDAQPSGFLDSRIRRFQSFAEISTEPGPHFGLGLEAYATWTSPIRKYGDMINH RLLKAVIKGEAIARPQEDITQQMAERRRLNRMAERDVGDWLYARFLNDKAGTNTRFAA EIIDVSRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVI DVTIAEVRMETRSIIARPAA" misc_feature 1794340..1796268 /gene="rnb" /locus_tag="STM1702" /note="exoribonuclease II; Provisional; Region: PRK05054" /db_xref="CDD:179920" gene 1796527..1798518 /gene="yciR" /locus_tag="STM1703" /db_xref="GeneID:1253222" regulatory 1796527..1796532 /regulatory_class="ribosome_binding_site" /gene="yciR" /locus_tag="STM1703" /note="putative RBS for yciR; RegulonDB:STMS1H001887" CDS 1796536..1798518 /gene="yciR" /locus_tag="STM1703" /note="diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain 2; similar to E. coli orf, hypothetical protein (AAC74367.1); Blastp hit to AAC74367.1 (661 aa), 79% identity in aa 1 - 657" /codon_start=1 /transl_table=11 /product="putative PAS/PAC domain protein" /protein_id="NP_460662.1" /db_xref="GeneID:1253222" /translation="MMKQIQEQTALNPLHSHWRLADDRNVLYLSPTGETDAEKTVELS PEQAGRIREITAITSSLLITLLIEKQVTAVHLVGRKINNREWAGSLATWPDTPAVSPT QAQELSFAEQIVSEANSVIAILDSRGKICRFNRLCEEYTGLKERDVIGQSVFKLFMSR REAVASRHYIENFFRNGNAYEIERWIKTRKGQRLFLFRNKFVHNGSGKNEIFLICAGT DITEERRAQERLRILANTDTVTGLPNRNAIHEFINHAIASAGESQVGIVYLDLDNFKK INDAYGHMFGDQLLQAVSLALLSCLEEDQLLARLGGDEFIVLAAHTSQAALEAVASRI LTRLRQPFRIGLIEVYTGCAIGISLAPRHGQDSESLIRTADTAMYNAKEGGRGQFCVF SPEMNQRVFDYHWLDTNLRKALENDQLLIHYQPKITWRGEVRSLEALVRWQSPERGLI PPLEFISYAEESGLIVPLGRWVILDVVRQIAKWRDKGINLRVAVNFSARQLADQTLFT ALKQALYDLNFEYCPIDVELTESCLIENDTLALSVIQQFSQLGAQIHLDDFGTGYSSL SQLARFPIDAVKLDQAFVRDIHKQPLSQSLVRAIVAVAQALNLQVIAEGVENAKEDAF LTKNGVNERQGFLFAKPMPAVSFERWYKRYQTKKMR" misc_feature 1796536..1798515 /gene="yciR" /locus_tag="STM1703" /note="cyclic di-GMP phosphodiesterase; Region: PRK10060" /db_xref="CDD:236645" gene 1798906..1799658 /gene="yciT" /locus_tag="STM1704" /db_xref="GeneID:1253223" CDS 1798906..1799658 /gene="yciT" /locus_tag="STM1704" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC74366.1); Blastp hit to AAC74366.1 (249 aa), 82% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="putative deoR family regulatory protein" /protein_id="NP_460663.1" /db_xref="GeneID:1253223" /translation="MNSRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQ SYLRRAHGFAVSLESDDVETRMMTNYTLKRRLAEFAASLVSPGESVFIENGSSNALLA RTLAEQKDVTIITVSSYIAHLLKETPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFS KAFIGIDGWQADTGFTGRDMMRSDVVNAVLEKGSEAIVLTDSSKFGCVHPYPLGPLSR FHRVITDSKISASDQMQLEHAGLLVNVIGSSV" misc_feature 1798906..1799643 /gene="yciT" /locus_tag="STM1704" /note="DNA-binding transcriptional regulator YciT; Region: trans_reg_YciT; NF040887" /db_xref="CDD:468823" gene 1799843..1800135 /gene="osmB" /locus_tag="STM1705" /db_xref="GeneID:1253224" regulatory 1799843..1799851 /regulatory_class="minus_35_signal" /gene="osmB" /locus_tag="STM1705" /note="putative -35_signal for osmB; RegulonDB:STMLTH004499" regulatory 1799869..1799877 /regulatory_class="minus_10_signal" /gene="osmB" /locus_tag="STM1705" /note="putative -10_signal for osmB; RegulonDB:STMLTH004499" regulatory 1799903..1799908 /regulatory_class="ribosome_binding_site" /gene="osmB" /locus_tag="STM1705" /note="putative RBS for osmB; RegulonDB:STMS1H001888" CDS 1799917..1800135 /gene="osmB" /locus_tag="STM1705" /note="osmotically inducible lipoprotein B. (SW:OSMB_SALTY)" /codon_start=1 /transl_table=11 /product="osmotically inducible lipoprotein" /protein_id="NP_460664.1" /db_xref="GeneID:1253224" /translation="MFMTSKKMAAAVLAITVAMSLSACSNWSKRDRNTAIGAGAGALG GAVLTDGSTLGTLGGAAVGGVIGHQVGK" misc_feature 1799917..1800132 /gene="osmB" /locus_tag="STM1705" /note="osmotically-inducible lipoprotein OsmB; Region: PRK10540" /db_xref="CDD:182532" gene complement(1800255..1800589) /gene="yciH" /locus_tag="STM1706" /db_xref="GeneID:1253225" CDS complement(1800255..1800581) /gene="yciH" /locus_tag="STM1706" /note="protein YCIH. (SW:YCIH_SALTY)" /codon_start=1 /transl_table=11 /product="putative translation initiation factor SUI1" /protein_id="NP_460665.1" /db_xref="GeneID:1253225" /translation="MSDSNSRLVYSTQTGRIEEPKTAPVRPKGDGIVRIQRQTSGRKG KGVCLITGIEMNDAELTKLAAELKKKCGCGGAVKEGIIEIQGDKRDLIKSLLEAKGMK VKLAGG" misc_feature complement(1800258..1800581) /gene="yciH" /locus_tag="STM1706" /note="stress response translation initiation inhibitor YciH; Region: PRK09019" /db_xref="CDD:181613" misc_feature complement(order(1800318..1800320,1800327..1800329, 1800354..1800356,1800360..1800368,1800372..1800380, 1800387..1800389,1800441..1800443,1800447..1800452, 1800462..1800464)) /gene="yciH" /locus_tag="STM1706" /note="putative rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:211319" gene complement(1800581..1801329) /gene="pyrF" /locus_tag="STM1707" /db_xref="GeneID:1253226" CDS complement(1800581..1801318) /gene="pyrF" /locus_tag="STM1707" /EC_number="4.1.1.23" /note="orotidine 5'-phosphate decarboxylase. (SW:DCOP_SALTY)" /codon_start=1 /transl_table=11 /product="orotidine-5'-phosphate decarboxylase" /protein_id="NP_460666.1" /db_xref="GeneID:1253226" /translation="MTFTASSSSCAITESPVVVALDYHERDKALAFVDKIDPRDCRLK VGKEMFTLFGPQLVRDLQQRGFDVFLDLKFHDIPNTTARAVAAAADLGVWMVNVHASG GARMMAAARDALAPFSKDAPLLIAVTVLTSMETSDLHDLGVTLSPAEHAERLARLTQQ CGLDGVVCSAQEAVRFKQAFGAAFKLVTPGIRPAGSEAGDQRRIMTPEQALSAGVDYM VIGRPVTQSVDPAQTLKDINASLKREA" misc_feature complement(1800590..1801282) /gene="pyrF" /locus_tag="STM1707" /note="orotidine-5'-phosphate decarboxylase; Region: PRK00230" /db_xref="CDD:234695" misc_feature complement(order(1800653..1800658,1800752..1800754, 1800926..1800931,1801100..1801102,1801106..1801108, 1801181..1801183,1801187..1801189,1801253..1801255, 1801259..1801261)) /gene="pyrF" /locus_tag="STM1707" /note="active site" /db_xref="CDD:240076" misc_feature complement(order(1800653..1800655,1800869..1800871, 1800929..1800931,1800962..1800964,1801016..1801024, 1801067..1801072,1801079..1801084,1801091..1801096, 1801100..1801105,1801172..1801177,1801181..1801183)) /gene="pyrF" /locus_tag="STM1707" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:240076" regulatory complement(1800584..1800589) /regulatory_class="ribosome_binding_site" /gene="yciH" /locus_tag="STM1706" /note="putative RBS for yciH; RegulonDB:STMS1H001889" regulatory complement(1801324..1801329) /regulatory_class="ribosome_binding_site" /gene="pyrF" /locus_tag="STM1707" /note="putative RBS for pyrF; RegulonDB:STMS1H001890" gene complement(1801509..1802693) /gene="yciM" /locus_tag="STM1708" /db_xref="GeneID:1253227" CDS complement(1801509..1802678) /gene="yciM" /locus_tag="STM1708" /note="similar to E. coli putative heat shock protein (AAC74362.1); Blastp hit to AAC74362.1 (389 aa), 93% identity in aa 1 - 388" /codon_start=1 /transl_table=11 /product="putative N-acetylglucosaminyl transferase" /protein_id="NP_460667.1" /db_xref="GeneID:1253227" /translation="MLELLFLLLPVAAAYGWYMGRRSAQQTKQDEANRLSRDYVAGVN FLLSNQQDKAVDLFLDMLKEDTGTVEAHLTLGNLFRSRGEVDRAIRIHQTLMESASLT YEQRLLAVQQLGRDYMAAGLYDRAEDMFNQLTDETEFRVGALQQLLQIYQLTSDWQKA IEVAERLVKLGKDKQRIEIAHFYCELALQQMGNDDMDRAMALLKKGAAADKNSARVSI MMGRVYMARGDYAKAVESLQRVIVQDKELVSETLEMLQTCYQQLGKNAEWAEFLRRAV EENTGAGAELMLADILEAREGSDAAQVYITRQLQRHPTMRVFHKLMDYHLNEAEEGRA KESLMVLRDMVGEQVRSKPRYRCQKCGFTAYTLYWHCPSCRAWSTIKPIRGLDGQ" misc_feature complement(1801512..1802651) /gene="yciM" /locus_tag="STM1708" /note="tetratricopeptide repeat protein; Provisional; Region: PRK11788" /db_xref="CDD:236983" misc_feature complement(order(1802322..1802324,1802331..1802336, 1802343..1802348,1802367..1802369,1802436..1802441, 1802445..1802450,1802457..1802462,1802469..1802471, 1802541..1802543,1802547..1802552)) /gene="yciM" /locus_tag="STM1708" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature complement(1802385..1802477) /gene="yciM" /locus_tag="STM1708" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(1802283..1802372) /gene="yciM" /locus_tag="STM1708" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(1802055..1802141) /gene="yciM" /locus_tag="STM1708" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(order(1801896..1801898,1801905..1801910, 1801917..1801922,1801929..1801931,1802001..1802006, 1802010..1802015,1802022..1802027,1802034..1802036, 1802106..1802108,1802112..1802117,1802124..1802129, 1802136..1802138)) /gene="yciM" /locus_tag="STM1708" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature complement(1801950..1802042) /gene="yciM" /locus_tag="STM1708" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(1801848..1801937) /gene="yciM" /locus_tag="STM1708" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene complement(1802685..1803005) /gene="yciS" /locus_tag="STM1709" /db_xref="GeneID:1253228" CDS complement(1802685..1802993) /gene="yciS" /locus_tag="STM1709" /note="similar to E. coli orf, hypothetical protein (AAC74361.1); Blastp hit to AAC74361.1 (102 aa), 92% identity in aa 1 - 102" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460668.1" /db_xref="GeneID:1253228" /translation="MKYLLIFLLVLAIFVISVTLGAQNDQQVTFNYLLAQGEYRISTL LAVLFAVGFAIGWLICGLFWLRVRVSLARAERKIKRLENKLSPATDVAVPADSSVVKE " misc_feature complement(1802715..1802993) /gene="yciS" /locus_tag="STM1709" /note="Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family [Function unknown]; Region: YciS; COG3771" /db_xref="CDD:442985" regulatory complement(1802688..1802693) /regulatory_class="ribosome_binding_site" /gene="yciS" /locus_tag="STM1709" /note="putative RBS for yciM; RegulonDB:STMS1H001891" regulatory complement(1803000..1803005) /regulatory_class="ribosome_binding_site" /gene="yciS" /locus_tag="STM1709" /note="putative RBS for yciS; RegulonDB:STMS1H001892" gene complement(1803143..1803918) /gene="pgpB" /locus_tag="STM1710" /db_xref="GeneID:1253229" CDS complement(1803143..1803907) /gene="pgpB" /locus_tag="STM1710" /EC_number="3.1.3.27" /note="similar to E. coli non-essential phosphatidylglycerophosphate phosphatase, membrane bound (AAC74360.1); Blastp hit to AAC74360.1 (254 aa), 82% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphate phosphatase B" /protein_id="NP_460669.1" /db_xref="GeneID:1253229" /translation="MLSIARRTAAGAALLLIMPLAVWVSGWQWQPGHQVWWLKTLFWI TETVTKPWGVITHVILCGWFLWCLRFRLRAAIMLFAILGGAIIVGQGVKSWVKERVQE PRPFVVWLEKTHHIPVDEFYTLKRTERGHLVKEQLAGQQNIPVFLRQHWQKETGFAFP SGHTMFAASWALLAVGLLWPRRRTFTIAFLLVWATGVMGSRLLLGMHWPRDLVVATLI SWLLVTLATWLAQRICGPLMPPREEAQEIAEREQES" misc_feature complement(1803176..1803907) /gene="pgpB" /locus_tag="STM1710" /note="phosphatidylglycerophosphatase B; Provisional; Region: PRK10699" /db_xref="CDD:182658" misc_feature complement(order(1803275..1803277,1803287..1803289, 1803305..1803307,1803419..1803427,1803596..1803598, 1803629..1803631)) /gene="pgpB" /locus_tag="STM1710" /note="active site" /db_xref="CDD:238813" regulatory complement(1803913..1803918) /regulatory_class="ribosome_binding_site" /gene="pgpB" /locus_tag="STM1710" /note="putative RBS for pgpB; RegulonDB:STMS1H001893" gene 1804091..1804693 /gene="ribA" /locus_tag="STM1711" /db_xref="GeneID:1253230" regulatory 1804091..1804096 /regulatory_class="ribosome_binding_site" /gene="ribA" /locus_tag="STM1711" /note="putative RBS for ribA; RegulonDB:STMS1H001894" CDS 1804103..1804693 /gene="ribA" /locus_tag="STM1711" /EC_number="3.5.4.25" /note="similar to E. coli GTP cyclohydrolase II (AAC74359.1); Blastp hit to AAC74359.1 (196 aa), 95% identity in aa 1 - 196" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase II" /protein_id="NP_460670.1" /db_xref="GeneID:1253230" /translation="MQLKRVAEAKLPTPLGDFLMVGFEELATGHDHAALVFGDISGKT PVLARVHSECLTGDALFSLRCDCGFQLEAALTHIAEEGRGILIYHRQEGRNIGLLNKI RAYALQDQGYDTVEANHQLGFAADERDFTLCADMFKLLGVDEVRLLTNNPKKVEILTE AGINIVERVPLIVGRNPNNEHYLDTKAAKMGHLLSK" misc_feature 1804103..1804690 /gene="ribA" /locus_tag="STM1711" /note="GTP cyclohydrolase II RibA; Region: ribA; PRK00393" /db_xref="CDD:234745" misc_feature order(1804118..1804138,1804160..1804162,1804166..1804174, 1804193..1804195,1804199..1804201,1804205..1804207, 1804259..1804261,1804265..1804270,1804274..1804288, 1804292..1804294,1804313..1804318,1804325..1804327, 1804364..1804366,1804370..1804372,1804394..1804399, 1804406..1804411,1804415..1804420,1804427..1804429) /gene="ribA" /locus_tag="STM1711" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238348" misc_feature order(1804247..1804264,1804268..1804270,1804295..1804297, 1804301..1804303,1804310..1804312,1804373..1804384, 1804403..1804405,1804415..1804417,1804424..1804426, 1804442..1804444,1804478..1804480,1804484..1804486, 1804547..1804555,1804562..1804564) /gene="ribA" /locus_tag="STM1711" /note="active site" /db_xref="CDD:238348" gene complement(1804749..1807432) /gene="acnA" /locus_tag="STM1712" /db_xref="GeneID:1253231" CDS complement(1804749..1807424) /gene="acnA" /locus_tag="STM1712" /EC_number="4.2.1.3" /note="similar to E. coli aconitate hydrase 1 (AAC74358.1); Blastp hit to AAC74358.1 (891 aa), 92% identity in aa 1 - 890" /codon_start=1 /transl_table=11 /product="aconitate hydratase 1" /protein_id="NP_460671.1" /db_xref="GeneID:1253231" /translation="MSSTLREASKDTLQAKDKTYHYYSLPLAAKSLGDIARLPKSLKV LLENLLRWQDGESVTDEDIQALAGWLKNAHADREIAWRPARVLMQDFTGVPAVVDLAA MREAVKRLGGDTSKVNPLSPVDLVIDHSVTVDHFGDDDAFEENVRLEMERNHERYMFL KWGKQAFSRFSVVPPGTGICHQVNLEYLGKAVWSELQDGEWIAYPDSLVGTDSHTTMI NGLGVLGWGVGGIEAEAAMLGQPVSMLIPDVVGFKLTGKLREGITATDLVLTVTQMLR KHGVVGKFVEFYGDGLDSLPLADRATIANMSPEYGATCGFFPIDAITLEYMRLSGRSD DLVELVETYAKAQGMWRNPGDEPVFTSTLELDMGDVEASLAGPKRPQDRVALGDVPKA FAASAELELNTAQRDRQPVDYTMNGQPYQLPDGAVVIAAITSCTNTSNPSVLMAAGLL AKKAVTLGLKRQPWVKASLAPGSKVVSDYLAQAKLTPYLDELGFNLVGYGCTTCIGNS GPLPEPIETAIKKGDLTVGAVLSGNRNFEGRIHPLVKTNWLASPPLVVAYALAGNMNI NLATDPLGYDRKGDPVYLKDIWPSAQEIARAVELVSSDMFRKEYAEVFEGTEEWKSIQ VESSDTYGWQSDSTYIRLSPFFDEMQAQPAPVKDIHGARILAMLGDSVTTDHISPAGS IKPDSPAGRYLQNHGVERKDFNSYGSRRGNHEVMMRGTFANIRIRNEMLPGVEGGMTR HLPGTEAMSIYDAAMLYQQEKTPLAVIAGKEYGSGSSRDWAAKGPRLLGIRVVIAESF ERIHRSNLIGMGILPLEFPQGVTRKTLGLTGEEVIDIADLQNLRPGATIPVTLTRSDG SKETVPCRCRIDTATELTYYQNDGILHYVIRNMLN" misc_feature complement(1804752..1807424) /gene="acnA" /locus_tag="STM1712" /note="aconitate hydratase AcnA; Region: PRK09277" /db_xref="CDD:236445" regulatory complement(1807427..1807432) /regulatory_class="ribosome_binding_site" /gene="acnA" /locus_tag="STM1712" /note="putative RBS for acnA; RegulonDB:STMS1H001895" gene complement(1808401..1809569) /gene="cysB" /locus_tag="STM1713" /db_xref="GeneID:1253232" CDS complement(1808401..1809375) /gene="cysB" /locus_tag="STM1713" /note="LysR family; cys regulon transcriptional activator. (SW:CYSB_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional regulator for cysteine regulon" /protein_id="NP_460672.1" /db_xref="GeneID:1253232" /translation="MKLQQLRYIVEVVNHNLNVSSTAEGLYTSQPGISKQVRMLEDEL GIQIFARSGKHLTQVTPAGQEIIRIAREVLSKVDAIKSVAGEHTWPDKGSLYIATTHT QARYALPGVIKGFIERYPRVSLHMHQGSPTQIAEAVSKGNADFAIATEALHLYDDLVM LPCYHWNRSIVVTPDHPLAATSSVTIEALAQYPLVTYTFGFTGRSELDTAFNRAGLTP RIVFTATDADVIKTYVRLGLGVGVIASMAVDPLADPDLVRIDAHDIFSHSTTKIGFRR STFLRSYMYDFIQRFAPHLTRDVVDTAVALRSNEEIEAMFQDIKLPEK" misc_feature complement(1808404..1809375) /gene="cysB" /locus_tag="STM1713" /note="HTH-type transcriptional regulator CysB; Region: cysB; PRK12681" /db_xref="CDD:183678" regulatory complement(1809384..1809389) /regulatory_class="ribosome_binding_site" /gene="cysB" /locus_tag="STM1713" /note="putative RBS for cysB; RegulonDB:STMS1H001896" regulatory complement(1809545..1809553) /regulatory_class="minus_10_signal" /gene="cysB" /locus_tag="STM1713" /note="putative -10_signal for cysB; RegulonDB:STMLTH004500" regulatory complement(1809561..1809569) /regulatory_class="minus_35_signal" /gene="cysB" /locus_tag="STM1713" /note="putative -35_signal for cysB; RegulonDB:STMLTH004500" gene complement(1809786..1812392) /gene="topA" /locus_tag="STM1714" /db_xref="GeneID:1253233" CDS complement(1809786..1812383) /gene="topA" /locus_tag="STM1714" /EC_number="5.6.2.1" /note="similar to E. coli DNA topoisomerase type I, omega protein (AAC74356.1); Blastp hit to AAC74356.1 (865 aa), 96% identity in aa 1 - 865" /codon_start=1 /transl_table=11 /product="DNA topoisomerase type I, omega protein" /protein_id="NP_460673.1" /db_xref="GeneID:1253233" /translation="MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAA KKSADSTSTKTAKKPKKDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLAEK ADHIYLATDLDREGEAIAWHLREVIGGDDARYSRVVFNEITKNAIRQAFEQPGELNIN RVNAQQARRFMDRVVGYMVSPLLWKKIARGLSAGRVQSVAVRLVVEREREIKAFVPEE FWEIDANTTTPSGEALPLQVTHQNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPT SSKPGAPFITSTLQQAASTRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNM VRGYIGDNFGKKYLPDNPNQYASKENSQEAHEAIRPSDVAVMAESLKDMEADAQKLYQ LIWRQFVACQMTPAQYDSTTLTVGAGEFRLKARGRILRFDGWTKVMPALRKGDEDRTL PAVNKGDALTLLELTPAQHFTKPPARFSEASLVKELEKRGIGRPSTYASIISTIQDRG YVRVENRRFYAEKMGEIVTDRLEENFRELMNYDFTAQMEDSLDQVANHQAEWKAVLDN FFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCPTCGRKMGIRTASTGVFLGCSGYAL SPKERCKTTINLVPENEVLNVLEGDDAETNALRAKRRCQKCGTAMDSYLIDPKRKLHV CGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHLKMGRFGKYMACTNDECKNTR KILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIFLAANTFPKSRETRAPLVE ELYRFRDRLPEKLRYLADAPQQDPEGNKTVVRFSRKTKQQYVAAEKDGKATGWSAFFV DGKWVEGKK" misc_feature complement(1809837..1812380) /gene="topA" /locus_tag="STM1714" /note="DNA topoisomerase I subunit omega; Validated; Region: PRK07561" /db_xref="CDD:236048" regulatory complement(1812387..1812392) /regulatory_class="ribosome_binding_site" /gene="topA" /locus_tag="STM1714" /note="putative RBS for topA; RegulonDB:STMS1H001897" gene 1812774..1813037 /gene="yciN" /locus_tag="STM1715" /db_xref="GeneID:1253234" regulatory 1812774..1812779 /regulatory_class="ribosome_binding_site" /gene="yciN" /locus_tag="STM1715" /note="putative RBS for yciN; RegulonDB:STMS1H001898" CDS 1812786..1813037 /gene="yciN" /locus_tag="STM1715" /note="similar to E. coli orf, hypothetical protein (AAC74355.1); Blastp hit to AAC74355.1 (83 aa), 92% identity in aa 1 - 83" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460674.1" /db_xref="GeneID:1253234" /translation="MHKETQPIDRETLLLEANKIIREHEDTMAGIVATGVTQRNGVLV FSGDYFLDEQGLPTPKSTAVFNMFKHLAHVLSEKYHLVD" misc_feature 1812786..1813034 /gene="yciN" /locus_tag="STM1715" /note="hypothetical protein; Provisional; Region: PRK11037" /db_xref="CDD:182919" gene complement(1813079..1814137) /gene="sohB" /locus_tag="STM1716" /db_xref="GeneID:1253235" CDS complement(1813079..1814125) /gene="sohB" /locus_tag="STM1716" /EC_number="3.4.21.-" /note="similar to E. coli putative protease (AAC74354.1); Blastp hit to AAC74354.1 (349 aa), 87% identity in aa 1 - 349" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_460675.1" /db_xref="GeneID:1253235" /translation="MELLSEYGLFLAKIVTVVVAIAVIVLLIVNATQRKRQRGELRVT NLSEQYQEMKDDLAAALMDGHQQKLWHKAQKKKHKQEAKAAKAKAKLGDIATSDKPRV WVIDFKGSMDAHEVNALREEVTAVLAVAKPGDRAVVRLESPGGVVHGYGLAASQLQRL RDKNIPLTVTVDKVAASGGYMMACVAEKIIAAPFAIVGSIGVVAQIPNFNRFLKSKDI DIELHTAGQYKRTLTLLGENTEEGRQKFREDLNETHHLFKEFVQRMRPALDIEQVATG EHWYGQQALEKGLVDEINTSDEVILGLMEGREVLNVRYMQRKKLIDRVTGSAAESADR LLLRWWQRGQKPLM" misc_feature complement(1813106..1814119) /gene="sohB" /locus_tag="STM1716" /note="putative inner membrane peptidase; Provisional; Region: PRK11778" /db_xref="CDD:236978" regulatory complement(1814132..1814137) /regulatory_class="ribosome_binding_site" /gene="sohB" /locus_tag="STM1716" /note="putative RBS for sohB; RegulonDB:STMS1H001899" gene 1814352..1815124 /gene="yciK" /locus_tag="STM1717" /db_xref="GeneID:1253236" regulatory 1814352..1814357 /regulatory_class="ribosome_binding_site" /gene="yciK" /locus_tag="STM1717" /note="putative RBS for yciK; RegulonDB:STMS1H001900" CDS 1814363..1815124 /gene="yciK" /locus_tag="STM1717" /note="similar to E. coli putative oxidoreductase (AAC74353.1); Blastp hit to AAC74353.1 (252 aa), 88% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="putative oxoacyl-(acyl carrier protein) reductase" /protein_id="NP_460676.1" /db_xref="GeneID:1253236" /translation="MHYQPKQDLLQNRIILVTGASDGIGREAALTYARYGATVILLGR NEEKLRRVAQHIADEQHVQPQWFTLDLLTCTAEECRQVADRIAAHYPRLDGVLHNAGL LGEIGPMSEQDPQIWQDVMQVNVNATFMLTQALLPLLLKSDAGSLVFTSSSVGRQGRA NWGAYATSKFATEGMMQVLADEYQNRSLRVNCINPGGTRTSMRASAFPTEDPQKLKTP ADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGIAQ" misc_feature 1814363..1815103 /gene="yciK" /locus_tag="STM1717" /note="putative oxoacyl-(acyl carrier protein) reductase; Provisional; Region: PRK08945" /db_xref="CDD:236357" misc_feature order(1814417..1814419,1814423..1814434,1814492..1814494, 1814567..1814578,1814657..1814665,1814729..1814731, 1814810..1814818,1814855..1814857,1814867..1814869, 1814945..1814956,1814960..1814962,1814966..1814971) /gene="yciK" /locus_tag="STM1717" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187599" misc_feature order(1814684..1814698,1814702..1814704,1814711..1814716, 1814723..1814728,1814735..1814740,1814747..1814752, 1814759..1814761,1814768..1814770,1814831..1814845, 1814849..1814851,1814858..1814863,1814870..1814875, 1814879..1814887,1814891..1814899,1814903..1814911) /gene="yciK" /locus_tag="STM1717" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187599" misc_feature order(1814732..1814734,1814816..1814818,1814855..1814857, 1814867..1814869) /gene="yciK" /locus_tag="STM1717" /note="active site" /db_xref="CDD:187599" gene 1815108..1815711 /gene="btuR" /locus_tag="STM1718" /db_xref="GeneID:1253237" regulatory 1815108..1815113 /regulatory_class="ribosome_binding_site" /gene="btuR" /locus_tag="STM1718" /note="putative RBS for btuR; RegulonDB:STMS1H001901" CDS 1815121..1815711 /gene="btuR" /locus_tag="STM1718" /EC_number="2.5.1.17" /note="cob(I)alamin adenosyltransferase. (SW:BTUR_SALTY)" /codon_start=1 /transl_table=11 /product="cob(I)alamin and cobinamide adenolsyltransferase" /protein_id="NP_460677.1" /db_xref="GeneID:1253237" /translation="MSDERYQQRQQKVKDRVDARVAQAQEERGIIIVFTGNGKGKTTA AFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADT AACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITG RGCHRDILDLADTVSELRPVKHAFDAGVKAQMGIDY" misc_feature 1815139..1815708 /gene="btuR" /locus_tag="STM1718" /note="cob(I)yrinic acid a,c-diamide adenosyltransferase; Region: PRK05986" /db_xref="CDD:235662" misc_feature order(1815202..1815204,1815235..1815237,1815247..1815249, 1815259..1815264,1815268..1815285,1815328..1815330, 1815334..1815339,1815343..1815348,1815583..1815585, 1815622..1815627,1815631..1815654,1815661..1815663, 1815667..1815672,1815679..1815687,1815691..1815696, 1815700..1815708) /gene="btuR" /locus_tag="STM1718" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:410862" misc_feature order(1815229..1815249,1815271..1815273,1815502..1815504, 1815601..1815603,1815664..1815666,1815703..1815705) /gene="btuR" /locus_tag="STM1718" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:410862" misc_feature order(1815316..1815318,1815325..1815327,1815397..1815399, 1815511..1815513,1815523..1815525,1815601..1815603, 1815670..1815672) /gene="btuR" /locus_tag="STM1718" /note="hydroxycobalamin binding site [chemical binding]; other site" /db_xref="CDD:410862" gene complement(1815798..1816684) /gene="yciL" /locus_tag="STM1719" /db_xref="GeneID:1253238" CDS complement(1815798..1816673) /gene="yciL" /locus_tag="STM1719" /note="similar to E. coli orf, hypothetical protein (AAC74351.1); Blastp hit to AAC74351.1 (291 aa), 97% identity in aa 1 - 291" /codon_start=1 /transl_table=11 /product="putative ribosomal large subunit pseudouridine synthase" /protein_id="NP_460678.1" /db_xref="GeneID:1253238" /translation="MSEKLQKVLARAGHGSRREIESIIEAGRVSVDGKIATLGDRVEV TPGLKIRIDGHLISVKESAEQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGAR WIAVGRLDVNTCGLLLFTTDGELANRLMHPSREVEREYAVRVFGQVDESKLRDLSRGV QLEDGPAAFKTIKFSGGEGINQWYNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDI PLPKGLPRGGWTELDLAQTNYLRGLVELPPETSSKVAVEKDRRRMKANQIRRAVKRHS QIAGGRRSGGRNNNG" misc_feature complement(1815807..1816673) /gene="yciL" /locus_tag="STM1719" /note="23S rRNA pseudouridine(2605) synthase RluB; Region: PRK10700" /db_xref="CDD:182659" regulatory complement(1816679..1816684) /regulatory_class="ribosome_binding_site" /gene="yciL" /locus_tag="STM1719" /note="putative RBS for yciL; RegulonDB:STMS1H001902" gene complement(1816774..1817403) /gene="yciO" /locus_tag="STM1720" /db_xref="GeneID:1253239" CDS complement(1816774..1817394) /gene="yciO" /locus_tag="STM1720" /note="similar to E. coli orf, hypothetical protein (AAC74349.1); Blastp hit to AAC74349.1 (218 aa), 93% identity in aa 13 - 218" /codon_start=1 /transl_table=11 /product="putative translation factor" /protein_id="NP_460679.1" /db_xref="GeneID:1253239" /translation="MSQFFYIHPDNPQQRLINQAVDIVRKGGVIVYPTDSGYALGCKI EDKGAMERICRIRHLPDGHNFTLMCRDLSELSTYSYVDNVAFRLMKNNTPGNYTFILK GTKEVPRRLLQEKRKTIGLRVPSNPIALALLDTLGEPMLSTSLMLPGSDFTESDPEEI KDRLEKQVDLIIHGGYLGQQPTTVIDLTNDSPVVLREGVGDVTPFL" misc_feature complement(1816777..1817394) /gene="yciO" /locus_tag="STM1720" /note="threonylcarbamoyl-AMP synthase; Region: PRK11630" /db_xref="CDD:183245" regulatory complement(1817398..1817403) /regulatory_class="ribosome_binding_site" /gene="yciO" /locus_tag="STM1720" /note="putative RBS for yciO; RegulonDB:STMS1H001903" gene complement(1817402..1818283) /gene="trpH" /locus_tag="STM1721" /db_xref="GeneID:1253240" CDS complement(1817402..1818283) /gene="trpH" /locus_tag="STM1721" /note="TRPH protein. (SW:TRPH_SALTY)" /codon_start=1 /transl_table=11 /product="trpR controlled transcriptional unit in the 5' upstream region of the trp operon" /protein_id="NP_460680.1" /db_xref="GeneID:1253240" /translation="MGAALSDTNYAVIYDLHSHTTASDGLLTPETLVHRAVEMRVGTL AITDHDTTAAIPAAREEISRSGLALNLIPGVEISTVWENHEIHIVGLNIDIAHPAMRD FLAQQTERRQARGRLIAERLEKAHIPGAWEGALRLANGGAVTRGHFARFLVECGKAAT MADVFKKYLARGKTGYVPPQWCTIEQAIDVIHHSGGKAVLAHPGRYDLSAKWLKRLVA HFADHHGDAMEVAQCQQSPNERTQLATLARQHHLWASLGSDFHQPCPWIELGRKLWLP AGVEGVWQTWEQPQISQ" misc_feature complement(1817426..1818244) /gene="trpH" /locus_tag="STM1721" /note="3',5'-nucleoside bisphosphate phosphatase; Region: nside_bi_sphtase; NF041577" /db_xref="CDD:469462" gene 1818341..1818449 /gene="trpL" /locus_tag="STM1722" /db_xref="GeneID:1253241" regulatory 1818341..1818349 /regulatory_class="minus_35_signal" /gene="trpL" /locus_tag="STM1722" /note="putative -35_signal for trpL; RegulonDB:STMLTH004501" protein_bind 1818361..1818377 /gene="trpL" /locus_tag="STM1722" /note="putative binding site for TrpR, RegulonDB: STMS1H000379" /bound_moiety="TrpR" regulatory 1818365..1818373 /regulatory_class="minus_10_signal" /gene="trpL" /locus_tag="STM1722" /note="putative -10_signal for trpL; RegulonDB:STMLTH004501" regulatory 1818392..1818397 /regulatory_class="ribosome_binding_site" /gene="trpL" /locus_tag="STM1722" /note="putative RBS for trpL; RegulonDB:STMS1H001904" CDS 1818405..1818449 /gene="trpL" /locus_tag="STM1722" /note="trp operon leader peptide. (SW:LPW_SALTY)" /codon_start=1 /transl_table=11 /product="trp operon leader peptide" /protein_id="NP_448140.1" /db_xref="GeneID:1253241" /translation="MAATFALHGWWRTS" gene 1818534..1820106 /gene="trpE" /locus_tag="STM1723" /db_xref="GeneID:1253242" regulatory 1818534..1818539 /regulatory_class="ribosome_binding_site" /gene="trpE" /locus_tag="STM1723" /note="putative RBS for trpE; RegulonDB:STMS1H001905" CDS 1818544..1820106 /gene="trpE" /locus_tag="STM1723" /EC_number="4.1.3.27" /note="anthranilate synthase component I. (SW:TRPE_SALTY)" /codon_start=1 /transl_table=11 /product="anthranilate synthase, component I" /protein_id="NP_460682.1" /db_xref="GeneID:1253242" /translation="MQTPKPTLELLTCDAAYRENPTALFHQVCGDRPATLLLESADID SKDDLKSLLLVDSALRITALGDTVTIQALSDNGASLLPLLDTALPAGVENDVLPAGRV LRFPPVSPLLDEDARLCSLSVFDAFRLLQGVVNIPTQEREAMFFGGLFAYDLVAGFEA LPHLEAGNNCPDYCFYLAETLMVIDHQKKSTRIQASLFTASDREKQRLNARLAYLSQQ LTQPAPPLPVTPVPDMRCECNQSDDAFGAVVRQLQKAIRAGEIFQVVPSRRFSLPCPS PLAAYYVLKKSNPSPYMFFMQDNDFTLFGASPESSLKYDAASRQIEIYPIAGTRPRGR RADGTLDRDLDSRIELDMRTDHKELSEHLMLVDLARNDLARICTPGSRYVADLTKVDR YSYVMHLVSRVVGELRHDLDALHAYRACMNMGTLSGAPKVRAMQLIADAEGQRRGSYG GAVGYFTAHGDLDTCIVIRSALVENGIATVQAGAGIVLDSVPQSEADETRNKARAVLR AIATAHHAQETF" misc_feature 1818544..1820103 /gene="trpE" /locus_tag="STM1723" /note="anthranilate synthase component 1; Region: PRK13564" /db_xref="CDD:237428" gene 1820092..1821701 /gene="trpD" /locus_tag="STM1724" /db_xref="GeneID:1253243" regulatory 1820092..1820097 /regulatory_class="ribosome_binding_site" /gene="trpE" /locus_tag="STM1723" /note="putative RBS for trpD; RegulonDB:STMS1H001906" CDS 1820106..1821701 /gene="trpD" /locus_tag="STM1724" /EC_number="4.1.3.27" /EC_number="2.4.2.18" /note="bifunctional: glutamine amidotransferase and phosphoribosylanthranilate transferase; anthranilate synthase component II ]. (SW:TRPG_SALTY)" /codon_start=1 /transl_table=11 /product="anthranilate synthase, component II" /protein_id="NP_460683.1" /db_xref="GeneID:1253243" /translation="MADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRL ATMKNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG EILHGKASSIEHDGQAMFAGLANPLPVARYHSLVGSNVPAGLTINAHFNGMVMAVRHD ADRVCGFQFHPESILTTQGARLLEQTLAWAQQKLEPTNTLQPILEKLYQAQTLTQQES HQLFSAVVRGELKPEQLAAALVSMKIRGEHPNEIAGAATALLENAAPFPRPEYLFADI VGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNAD KSRQALDELGVCFLFAPKYHTGLRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGV YSPELVLPIAETLRVLGYQRAAVVHSGGMDEVSLHAPTIVAELHDGEIKSYQLTAEDF GLTPYHQDQLAGGTPEENRDILTRLLQGKGDAAHEAAVAANVAMLMRLHGQEDLKANA QTVLDVLRNGTAYDRVTALAARG" misc_feature 1820106..1821698 /gene="trpD" /locus_tag="STM1724" /note="bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD; Region: PRK09522" /db_xref="CDD:181927" gene 1821643..1823063 /gene="trpC" /locus_tag="STM1725" /db_xref="GeneID:1253244" regulatory 1821643..1821651 /regulatory_class="minus_35_signal" /gene="trpC" /locus_tag="STM1725" /note="putative -35_signal for trpC; RegulonDB:STMLTH004502" regulatory 1821669..1821677 /regulatory_class="minus_10_signal" /gene="trpC" /locus_tag="STM1725" /note="putative -10_signal for trpC; RegulonDB:STMLTH004502" regulatory 1821694..1821699 /regulatory_class="ribosome_binding_site" /gene="trpC" /locus_tag="STM1725" /note="putative RBS for trpC; RegulonDB:STMS1H001907" CDS 1821705..1823063 /gene="trpC" /locus_tag="STM1725" /EC_number="4.1.1.48" /EC_number="5.3.1.24" /note="bifunctional; tryptophan biosynthesis protein TRPCF [includes: indole-3-glycerolphosphate synthase ]. (SW:TRPC_SALTY); indole-3-glycerolphosphate synthetase" /codon_start=1 /transl_table=11 /product="N-(5-phosphoribosyl)anthranilate isomerase" /protein_id="NP_460684.1" /db_xref="GeneID:1253244" /translation="MQTVLAKIVADKAIWVEARKQQQPLASFQNEIQPSTRHFYDALQ GARTAFILECKKASPSKGVIRDDFDPARIASIYQHYASAISVLTDEKYFQGSFDFLPV VSQSAPQPILCKDFIIDPYQIYLARYYQADACLLMLSVLDDEQYRQLSAVAHSLKMGV LTEVSNDEERERAIALGAKVVGINNRDLRDLSIDLNRTRQLAPKLGHGVTVISESGIN TYGQVRELSHFANGFLIGSALMAHDDLNAAVRRVLLGENKVCGLTRAQDAKAACDAGA IYGGLIFVPSSPRAVSVEQAREVISGAPLQYVGVFKNADIADVCQKAAVLSLSAVQLH GSEDQAYVNALREALPKQVQIWKALSVSDALPARDYHHVDKYIFDNGQGGSGQRFDWS LLQGQPLDNVLLAGGLAADNCVQAAQVGCAGLDFNSGVESQPGIKDARLLASVFQTLR AY" misc_feature 1821705..1823060 /gene="trpC" /locus_tag="STM1725" /note="bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF; Region: PRK09427" /db_xref="CDD:236509" gene 1823062..1824266 /gene="trpB" /locus_tag="STM1726" /db_xref="GeneID:1253245" regulatory 1823062..1823067 /regulatory_class="ribosome_binding_site" /gene="trpB" /locus_tag="STM1726" /note="putative RBS for trpB; RegulonDB:STMS1H001908" CDS 1823073..1824266 /gene="trpB" /locus_tag="STM1726" /EC_number="4.2.1.20" /note="tryptophan synthase beta chain. (SW:TRPB_SALTY)" /codon_start=1 /transl_table=11 /product="tryptophan synthase, beta protein" /protein_id="NP_460685.1" /db_xref="GeneID:1253245" /translation="MTTLLNPYFGEFGGMYVPQILMPALNQLEEAFVSAQKDPEFQAQ FADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMG KSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVH SGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILD KEGRLPDAVIACVGGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEHGAPLKHGRV GIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALE AFKTLCRHEGIIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVHDILK ARGEI" misc_feature 1823085..1824245 /gene="trpB" /locus_tag="STM1726" /note="tryptophan synthase subunit beta; Validated; Region: PRK04346" /db_xref="CDD:235288" misc_feature order(1823328..1823333,1823412..1823414,1823640..1823642, 1823766..1823780,1824120..1824122,1824201..1824203) /gene="trpB" /locus_tag="STM1726" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107207" misc_feature 1823331..1823333 /gene="trpB" /locus_tag="STM1726" /note="catalytic residue [active]" /db_xref="CDD:107207" gene 1824253..1825072 /gene="trpA" /locus_tag="STM1727" /db_xref="GeneID:1253246" regulatory 1824253..1824258 /regulatory_class="ribosome_binding_site" /gene="trpA" /locus_tag="STM1727" /note="putative RBS for trpA; RegulonDB:STMS1H001909" CDS 1824266..1825072 /gene="trpA" /locus_tag="STM1727" /EC_number="4.2.1.20" /note="tryptophan synthase alpha chain. (SW:TRPA_SALTY)" /codon_start=1 /transl_table=11 /product="tryptophan synthase, alpha protein" /protein_id="NP_460686.1" /db_xref="GeneID:1253246" /translation="MERYENLFAQLNDRREGAFVPFVTLGDPGIEQSLKIIDTLIDAG ADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLALIREKHPTIPIGLLMY ANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRHNIAPIFICPPNADD DLLRQVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYHAAPALQGFGISSPE QVSAAVRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSAMKAASRA" misc_feature 1824287..1825054 /gene="trpA" /locus_tag="STM1727" /note="tryptophan synthase, alpha subunit; Region: trpA; TIGR00262" /db_xref="CDD:161792" misc_feature order(1824410..1824412,1824443..1824445,1824455..1824457, 1824788..1824790,1824812..1824817,1824899..1824904, 1824965..1824970) /gene="trpA" /locus_tag="STM1727" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:240075" misc_feature order(1824410..1824412,1824443..1824445,1824569..1824571, 1824812..1824814) /gene="trpA" /locus_tag="STM1727" /note="active site" /db_xref="CDD:240075" misc_feature order(1824410..1824412,1824443..1824445,1824569..1824571) /gene="trpA" /locus_tag="STM1727" /note="catalytic residues [active]" /db_xref="CDD:240075" misc_feature order(1824425..1824436,1824440..1824442,1824449..1824451, 1824458..1824463,1824575..1824577,1824584..1824586, 1824650..1824655,1824659..1824661,1824668..1824670, 1824728..1824730,1824734..1824742,1824749..1824751) /gene="trpA" /locus_tag="STM1727" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:240075" gene 1825539..1825734 /gene="yciG" /locus_tag="STM1728" /db_xref="GeneID:1253247" regulatory 1825539..1825544 /regulatory_class="ribosome_binding_site" /gene="yciG" /locus_tag="STM1728" /note="putative RBS for yciG; RegulonDB:STMS1H001910" CDS 1825552..1825734 /gene="yciG" /locus_tag="STM1728" /note="similar to E. coli orf, hypothetical protein (AAC74341.1); Blastp hit to AAC74341.1 (78 aa), 88% identity in aa 20 - 78" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460687.1" /db_xref="GeneID:1253247" /translation="MAEHRGGSGNFAENREKASEAGRKGGQHSGGNFKNDPQRASEAG KKGGQNSHGGRKSDNS" misc_feature 1825558..1825722 /gene="yciG" /locus_tag="STM1728" /note="General stress protein YciG, contains tandem KGG domains [General function prediction only]; Region: GsiB; COG3729" /db_xref="CDD:442943" gene 1825808..1826327 /gene="yciF" /locus_tag="STM1729" /db_xref="GeneID:1253248" regulatory 1825808..1825813 /regulatory_class="ribosome_binding_site" /gene="yciF" /locus_tag="STM1729" /note="putative RBS for yciF; RegulonDB:STMS1H001911" CDS 1825824..1826327 /gene="yciF" /locus_tag="STM1729" /note="similar to E. coli putative structural proteins (AAC74340.1); Blastp hit to AAC74340.1 (166 aa), 86% identity in aa 1 - 166" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460688.1" /db_xref="GeneID:1253248" /translation="MNIKTVEDLFIHLLSDTYSAEKQLTKALPKLARATSNEKLSQAF QSHLEETQGQIERIDQIVESESGIKLKRMKCVAMEGLIEEANEVIESTEKNEVRDAAL IAAAQKVEHYEIASYGTLATLAEQLGYSKALKLLKETLDEEKQTDLKLTDLAVSNVNK SAERKSK" misc_feature 1825824..1826321 /gene="yciF" /locus_tag="STM1729" /note="Ferritin-like metal-binding protein YciE [Inorganic ion transport and metabolism]; Region: YciE; COG3685" /db_xref="CDD:442901" gene 1826389..1826907 /gene="yciE" /locus_tag="STM1730" /db_xref="GeneID:1253249" regulatory 1826389..1826394 /regulatory_class="ribosome_binding_site" /gene="yciE" /locus_tag="STM1730" /note="putative RBS for yciE; RegulonDB:STMS1H001912" CDS 1826401..1826907 /gene="yciE" /locus_tag="STM1730" /note="similar to E. coli orf, hypothetical protein (AAC74339.1); Blastp hit to AAC74339.1 (168 aa), 85% identity in aa 1 - 168" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460689.1" /db_xref="GeneID:1253249" /translation="MNYTEHYHDWLRDAHAMEKQAESMLESMASRIENYPDIKARIEQ HISETKHQITMLEEVLDRNGISRSVLKDSMSKMAAMGQSIGGMFPSDEIVKGSISGYV FEQFEIACYTSLLAAAKKAGDTASIPTIEAILKEEMQMADWLIKHIPQTTEQFLLRSE ADGVEAKK" misc_feature 1826413..1826868 /gene="yciE" /locus_tag="STM1730" /note="Domain of unknown function (DUF892); Region: DUF892; pfam05974" /db_xref="CDD:428701" misc_feature order(1826452..1826454,1826545..1826547,1826554..1826556, 1826710..1826712,1826809..1826811,1826818..1826820) /gene="yciE" /locus_tag="STM1730" /note="dinuclear metal binding motif [ion binding]; other site" /db_xref="CDD:153097" gene 1826919..1827805 /locus_tag="STM1731" /db_xref="GeneID:1253250" regulatory 1826919..1826924 /regulatory_class="ribosome_binding_site" /locus_tag="STM1731" /note="putative RBS for STM1731; RegulonDB:STMS1H001913" CDS 1826927..1827805 /locus_tag="STM1731" /note="putative catalase (gi|7162108)" /codon_start=1 /transl_table=11 /product="putative catalase" /protein_id="NP_460690.1" /db_xref="GeneID:1253250" /translation="MFRHVKQLQYTVRVSEPNPGLANLLLEQFGGPQGELAAACRYFT QGLSDDDAGRREMLMDIATEELSHLEIIGSLVGMLNKGAKGELAEGTENEAELYRSLT QNGNDSHITSLLYGGGPALTNSGGVPWTAAYIDTIGEVTADLRSNIAAEARAKIIYER LINLTDDPGVKDTLSFLMTREVAHQLSFEKALYSIRNNFPPGKLPPVEQYTDVYYNMS QGDDPRGSWNSDENFNYVAEPMPAVDGGDGLATVKLPREQMALLKAMAERTKSDPTVD PLTGAELGCGEPKEDK" misc_feature 1826927..1827643 /locus_tag="STM1731" /note="Mn-containing catalase (includes spore coat protein CotJC) [Inorganic ion transport and metabolism]; Region: CotJC; COG3546" /db_xref="CDD:442767" gene complement(1827887..1828536) /gene="ompW" /locus_tag="STM1732" /db_xref="GeneID:1253251" CDS complement(1827887..1828525) /gene="ompW" /locus_tag="STM1732" /note="colicin S4 receptor; putative transporter; similar to E. coli putative outer membrane protein (AAC74338.1); Blastp hit to AAC74338.1 (212 aa), 88% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="outer membrane protein W" /protein_id="NP_460691.1" /db_xref="GeneID:1253251" /translation="MKKFTVAALALTTLLSGSAFAHEAGEFFMRAGPATVRPTEGAGG TLGHLNGFDVSNNTQLGLTFTYMATDNIGVELLAATPFRHKVGTGATGDIATVHLLPP TLMAQWYFGDSSSKVRPYVGVGVNYTTFFDNDFNDNGKNAGLSDLSFKDSWGAAGQVG VDYLINRDWLIGASVWYMDIDTTANYKMGGVQHHDSVRLDPWVFMFSAGYRF" misc_feature complement(1827890..1828525) /gene="ompW" /locus_tag="STM1732" /note="outer membrane protein W; Provisional; Region: PRK10959" /db_xref="CDD:182867" regulatory complement(1828531..1828536) /regulatory_class="ribosome_binding_site" /gene="ompW" /locus_tag="STM1732" /note="putative RBS for ompW; RegulonDB:STMS1H001914" gene 1828853..1829267 /locus_tag="STM1733" /db_xref="GeneID:1253252" regulatory 1828853..1828858 /regulatory_class="ribosome_binding_site" /locus_tag="STM1733" /note="putative RBS for STM1733; RegulonDB:STMS1H001915" CDS 1828863..1829267 /locus_tag="STM1733" /note="similar to E. coli putative ferredoxin (AAC73391.1); Blastp hit to AAC73391.1 (109 aa), 74% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="putative ferredoxin" /protein_id="NP_460692.1" /db_xref="GeneID:1253252" /translation="MSVLNPCMTCGACCAYFRVSFYWAEGDDASGRVPASLTEPVTPF LRCMAGTNQKQPHCKALIGTPGENVSCAIYENRPSTCREFSISGEGGEVNEACNRARA RYGLPPLYKDMLFHTTADAATVELSRVQLPAN" misc_feature 1828866..1829201 /locus_tag="STM1733" /note="Uncharacterized protein YkgJ, contains CxxCxxCC motif [General function prediction only]; Region: YkgJ; COG0727" /db_xref="CDD:440491" gene 1829282..1830036 /gene="yciC" /locus_tag="STM1734" /db_xref="GeneID:1253253" regulatory 1829282..1829287 /regulatory_class="ribosome_binding_site" /gene="yciC" /locus_tag="STM1734" /note="putative RBS for yciC; RegulonDB:STMS1H001916" CDS 1829293..1830036 /gene="yciC" /locus_tag="STM1734" /note="similar to E. coli orf, hypothetical protein (AAC74337.1); Blastp hit to AAC74337.1 (247 aa), 87% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460693.1" /db_xref="GeneID:1253253" /translation="MSITAKSVYRDAGNFFRNQFITILLVSLLCAFITVVLGHAFSPS DAQIAQLSEGEHLAGSAGLFELVQNMTPEQQQILLRASAASTFSGLIGNAILAGGIIL MIQLVSAGHRVSALRAIGASAPALPKLFILIFLTTLLVQIGIMLIVVPGIIMAIVLAL APVMLVEEKMGVFAAMRSSMRLAWANMRLVAPAVIGWLLAKTLLLLFAPSFAVLTPNV GAVLANTLSNLISAVLLIYLFRLYMLIRQ" misc_feature 1829302..1830033 /gene="yciC" /locus_tag="STM1734" /note="hypothetical protein; Provisional; Region: PRK02868" /db_xref="CDD:235080" gene 1830080..1830632 /gene="yciB" /locus_tag="STM1735" /db_xref="GeneID:1253254" regulatory 1830080..1830085 /regulatory_class="ribosome_binding_site" /gene="yciB" /locus_tag="STM1735" /note="putative RBS for yciB; RegulonDB:STMS1H001917" CDS 1830093..1830632 /gene="yciB" /locus_tag="STM1735" /note="similar to E. coli orf, hypothetical protein (AAC74336.1); Blastp hit to AAC74336.1 (179 aa), 93% identity in aa 1 - 179" /codon_start=1 /transl_table=11 /product="putative intracellular septation protein" /protein_id="NP_460694.1" /db_xref="GeneID:1253254" /translation="MKQFLDFLPLVVFFAFYKLYDIYAATSALIVATAIVLIYSWVRY RKIEKMALITFVLVAVFGGLTLFFHNDEFIKWKVTVIYALFAGALLISQWVMKKPLIQ RMLGKELALPQQVWSKLNLAWALFFIACGLANIYIAFWLPQNIWVNFKVFGLTALTLI FTLLSGVYIYRHLPQEDKS" misc_feature 1830093..1830629 /gene="yciB" /locus_tag="STM1735" /note="intracellular septation protein A; Reviewed; Region: PRK00259" /db_xref="CDD:234704" gene 1830793..1831194 /gene="yciA" /locus_tag="STM1736" /db_xref="GeneID:1253255" CDS 1830793..1831194 /gene="yciA" /locus_tag="STM1736" /note="putative acyl-coA thioester hydrolase YCIA. (SW:YCIA_SALTY)" /codon_start=1 /transl_table=11 /product="putative Acyl-CoA hydrolase" /protein_id="NP_460695.1" /db_xref="GeneID:1253255" /translation="MTTMDNTPQGELVLRTLAMPADTNANGDIFGGWLMSQMDIGGAI LAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKRGTTSISINIEVWVKKVASE PIGQRYKATEALFIYVAVDPDGKPRPLPVQG" misc_feature 1830793..1831191 /gene="yciA" /locus_tag="STM1736" /note="acyl-CoA thioester hydrolase YciA; Region: PRK10694" /db_xref="CDD:236736" gene complement(1831254..1832052) /gene="tonB" /locus_tag="STM1737" /db_xref="GeneID:1253256" CDS complement(1831254..1831982) /gene="tonB" /locus_tag="STM1737" /note="energy transducer; uptake of iron, cyanocobalimin; sensitivity to phages, colicins; TONB protein. (SW:TONB_SALTY)" /codon_start=1 /transl_table=11 /product="TonB" /protein_id="NP_460696.1" /db_xref="GeneID:1253256" /translation="MTLDLPRRFPWPTLLSVGIHGAVVAGLLYTSVHQVIELPAPAQP ITVTMVSPADLEPPQAVQPPPEPVVEPEPEPEPEPIPEPPKEAPVVIEKPKPKPKPKP KPKPVKKVEEQPKREVKPAAPRPASPFENSAPVRPTSSTASATSKPAVSVPTGPRALS RNQPQYPARAQALRIEGRVKVKFDVTSAGRVENVQILSAQPANMFEREVKNAMRKWRY EAGKPGSGLVVNIIFRLNGTAQIE" misc_feature complement(1831257..1831982) /gene="tonB" /locus_tag="STM1737" /note="transport protein TonB; Provisional; Region: PRK10819" /db_xref="CDD:236768" regulatory complement(1831997..1832002) /regulatory_class="ribosome_binding_site" /gene="tonB" /locus_tag="STM1737" /note="putative RBS for tonB; RegulonDB:STMS1H001918" regulatory complement(1832028..1832036) /regulatory_class="minus_10_signal" /gene="tonB" /locus_tag="STM1737" /note="putative -10_signal for tonB; RegulonDB:STMLTH004503" protein_bind complement(1832036..1832056) /note="putative binding site for Fur, RegulonDB: STMS1H000190" /bound_moiety="Fur" regulatory complement(1832044..1832052) /regulatory_class="minus_35_signal" /gene="tonB" /locus_tag="STM1737" /note="putative -35_signal for tonB; RegulonDB:STMLTH004503" gene 1832192..1832502 /gene="yciI" /locus_tag="STM1738" /db_xref="GeneID:1253257" regulatory 1832192..1832197 /regulatory_class="ribosome_binding_site" /gene="yciI" /locus_tag="STM1738" /note="putative RBS for yciI; RegulonDB:STMS1H001919" CDS 1832206..1832502 /gene="yciI" /locus_tag="STM1738" /note="similar to E. coli orf, hypothetical protein (AAC74333.1); Blastp hit to AAC74333.1 (130 aa), 91% identity in aa 33 - 130" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460697.1" /db_xref="GeneID:1253257" /translation="MLYVIYAQDNANSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMP AVDSNDPGVAGFTGSTVIAEFESLEAAQSWADADPYVAAGVYAQVSVKPYKKIF" misc_feature 1832206..1832499 /gene="yciI" /locus_tag="STM1738" /note="YciI family protein; Region: PRK11370" /db_xref="CDD:183103" protein_bind complement(1832360..1832380) /note="putative binding site for Fur, RegulonDB: STMS1H000193" /bound_moiety="Fur" gene 1832846..1834322 /gene="cls" /locus_tag="STM1739" /db_xref="GeneID:1253258" regulatory 1832846..1832851 /regulatory_class="ribosome_binding_site" /gene="cls" /locus_tag="STM1739" /note="putative RBS for cls; RegulonDB:STMS1H001920" CDS 1832862..1834322 /gene="cls" /locus_tag="STM1739" /EC_number="2.7.8.-" /note="similar to E. coli cardiolipin synthase, a major membrane phospholipid; novobiocin sensitivity (AAC74331.1); Blastp hit to AAC74331.1 (486 aa), 94% identity in aa 1 - 486" /codon_start=1 /transl_table=11 /product="cardiolipin synthase" /protein_id="NP_460698.1" /db_xref="GeneID:1253258" /translation="MTTFYTVVSWLVILGYWVLIAGVTLRILMKRRAVPSAMAWLLII YILPLVGIIAYLSVGELHLGKRRAERARAMWPSTAKWLNDLKACKHIFAQENSSVASS LFKLCERRQGIAGVKGNQLQLLTDSDDVMQALIRDIQLARHNIEMVFYIWQPGGMADQ VAESLMAAARRGIHCRLMLDSAGSVAFFRSPWAAMMRNAGIEVVEALKVNLMRVFLRR MDLRQHRKMVMIDNYIAYTGSMNMVDPRFFKQDAGVGQWVDLMARMEGPVATAMGIVY SCDWEIETGKRILPPPPDVNIMPFEQASGHTIHTIASGPGFPEDLIHQALLTATYAAR EYLIMTTPYFVPSDDLLHAICTAAQRGVDVSIILPRKNDSLLVGWASRAFFSELLAAG VKIYQFEGGLLHTKSVLVDGELSLVGTVNLDMRSLWLNFEITLVIDDTGFGADLAAVQ DDYISRSRLLDARLWVKRPLWQRITERLFYFFSPLL" misc_feature 1832871..1834319 /gene="cls" /locus_tag="STM1739" /note="cardiolipin synthetase; Reviewed; Region: cls; PRK01642" /db_xref="CDD:234967" gene 1834344..1834685 /gene="yciU" /locus_tag="STM1740" /db_xref="GeneID:2673771" regulatory 1834344..1834349 /regulatory_class="ribosome_binding_site" /gene="yciU" /locus_tag="STM1740" /note="putative RBS for yciU; RegulonDB:STMS1H001921" CDS 1834356..1834685 /gene="yciU" /locus_tag="STM1740" /note="similar to E. coli orf, hypothetical protein (AAC74330.1); Blastp hit to AAC74330.1 (135 aa), 92% identity in aa 27 - 135" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_448158.1" /db_xref="GeneID:2673771" /translation="MEMDLNNRLTEDETLEQAYDIFLELAADNLDPADIILFNLQFEE RGGAELFDPAEDWQEHIDFDLNPDFFAEVVIGLADTEDGEINDIFARVLLCREKDHKL CHILWRE" misc_feature 1834362..1834682 /gene="yciU" /locus_tag="STM1740" /note="dsDNA-mimic protein; Reviewed; Region: PRK05094" /db_xref="CDD:179934" gene complement(1834733..1835575) /locus_tag="STM1741" /db_xref="GeneID:1253260" CDS complement(1834733..1835569) /locus_tag="STM1741" /codon_start=1 /transl_table=11 /product="putative voltage-gated potassium channel" /protein_id="NP_460700.1" /db_xref="GeneID:1253260" /translation="MSLSLSSVRRRLYHNLFDLTTRSGRRFEGLCALFALLSVLVIFV ESGVGTEYHLTFDEWHIFVWLELCVTLIFTGEYLLRLFSWPEPAKYVFSFWGFIDLVT ILPLYVMWLWPEISLNYMFAWRAMRAIRVLRILKLLRFMPSLRVFWSAIISARHQLIL FYSFIAIVMIIFGALMYLIEGPKYGFTTLNASVYWAIVTVTTVGYGDITPHTPLGRIV ASVLILIGYSVIAIPTGLITTHMSSAFQKRHWQRKCPQCQQSQHEHSAQYCNRCGSKL PD" misc_feature complement(1834823..1835497) /locus_tag="STM1741" /note="Ion transport protein; Region: Ion_trans; pfam00520" /db_xref="CDD:459842" misc_feature complement(<1834739..1834810) /locus_tag="STM1741" /note="Double zinc ribbon; Region: DZR; pfam12773" /db_xref="CDD:432773" regulatory complement(1835570..1835575) /regulatory_class="ribosome_binding_site" /locus_tag="STM1741" /note="putative RBS for STM1741; RegulonDB:STMS1H001922" gene complement(1835617..1836632) /gene="oppF" /locus_tag="STM1742" /db_xref="GeneID:1253261" CDS complement(1835617..1836621) /gene="oppF" /locus_tag="STM1742" /note="ABC superfamily (atp-binding); oligopeptide transport ATP-binding protein) OPPF. (SW:OPPF_SALTY)" /codon_start=1 /transl_table=11 /product="oligopeptide transport protein" /protein_id="NP_460701.1" /db_xref="GeneID:1253261" /translation="MNAVIEQRKVLLEIADLKVHFDIKEGKQWFWQPPKTLKAVDGVT LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGKVAWLGKDLLGMKADEWREVRSD IQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQDVRDRVKAMMLKVGLLPNLINR YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSL IFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTKALMSAVPIPDPDLE RNKKIQLLEGELPSPINPPSGCVFRTRCPIAGPECAQTRPVLEGSFRHAVSCLKVDPL " misc_feature complement(1835620..1836612) /gene="oppF" /locus_tag="STM1742" /note="oligopeptide ABC transporter ATP-binding protein OppF; Provisional; Region: PRK15079" /db_xref="CDD:185037" misc_feature complement(1836430..1836453) /gene="oppF" /locus_tag="STM1742" /note="Walker A/P-loop; other site" /db_xref="CDD:213224" misc_feature complement(order(1835953..1835955,1836052..1836057, 1836298..1836300,1836427..1836435,1836439..1836444)) /gene="oppF" /locus_tag="STM1742" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213224" misc_feature complement(1836298..1836309) /gene="oppF" /locus_tag="STM1742" /note="Q-loop/lid; other site" /db_xref="CDD:213224" misc_feature complement(1836100..1836129) /gene="oppF" /locus_tag="STM1742" /note="ABC transporter signature motif; other site" /db_xref="CDD:213224" misc_feature complement(1836052..1836069) /gene="oppF" /locus_tag="STM1742" /note="Walker B; other site" /db_xref="CDD:213224" misc_feature complement(1836034..1836045) /gene="oppF" /locus_tag="STM1742" /note="D-loop; other site" /db_xref="CDD:213224" misc_feature complement(1835947..1835967) /gene="oppF" /locus_tag="STM1742" /note="H-loop/switch region; other site" /db_xref="CDD:213224" gene complement(1836618..1837638) /gene="oppD" /locus_tag="STM1743" /db_xref="GeneID:1253262" CDS complement(1836618..1837625) /gene="oppD" /locus_tag="STM1743" /note="ABC superfamily (atp-binding); oligopeptide transport ATP-binding protein OPPD. (SW:OPPD_SALTY)" /codon_start=1 /transl_table=11 /product="oligopeptide transport protein" /protein_id="NP_460702.1" /db_xref="GeneID:1253262" /translation="MSLSETATQAPQPANVLLEVNDLRVTFATPDGDVTAVNDLNFTL RAGETLGIVGESGSGKSQTAFALMGLLATNGRIGGSATFNGREILNLPERELNTLRAE QISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRM KMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNT AIIMITHDLGVVAGICDKVLVMYAGRTMEYGKARDVFYQPVHPYSIGLLNAVPRLDSE GAEMLTIPGNPPNLLRLPKGCPFQPRCPHAMEICNNAPPLEAFSPGRLRACFKPVEEL L" misc_feature complement(1836624..1837610) /gene="oppD" /locus_tag="STM1743" /note="oligopeptide transporter ATP-binding component; Provisional; Region: oppD; PRK09473" /db_xref="CDD:181888" regulatory complement(1836627..1836632) /regulatory_class="ribosome_binding_site" /gene="oppF" /locus_tag="STM1742" /note="putative RBS for oppF; RegulonDB:STMS1H001923" regulatory complement(1837633..1837638) /regulatory_class="ribosome_binding_site" /gene="oppD" /locus_tag="STM1743" /note="putative RBS for oppD; RegulonDB:STMS1H001924" gene complement(1837637..1838557) /gene="oppC" /locus_tag="STM1744" /db_xref="GeneID:1253263" CDS complement(1837637..1838545) /gene="oppC" /locus_tag="STM1744" /note="ABC superfamily (membrane); oligopeptide transport system permease protein OPPC. (SW:OPPC_SALTY)" /codon_start=1 /transl_table=11 /product="oligopeptide transport protein" /protein_id="NP_460703.1" /db_xref="GeneID:1253263" /translation="MMLSKKNSETLENFSEKLEVEGRSLWQDARRRFMHNRAAVASLI VLFLIALFVTVAPMLSQFTYFDTDWGMMSSAPDMASGHYFGTDSSGRDLLVRVAIGGR ISLMVGIAAALVAVIVGTLYGSLSGYLGGKIDSVMMRLLEILNSFPFMFFVILLVTFF GQNILLIFVAIGMVSWLDMARIVRGQTLSLKRKEFIEAAQVGGVSTASIVIRHIVPNV LGVVVVYASLLVPSMILFESFLSFLGLGTQEPLSSWGALLSDGANSMEVSPWLLLFPA GFLVVTLFCFNFIGDGLRDALDPKDR" misc_feature complement(1837640..1838545) /gene="oppC" /locus_tag="STM1744" /note="oligopeptide ABC transporter permease OppC; Provisional; Region: PRK15406" /db_xref="CDD:185304" regulatory complement(1838552..1838557) /regulatory_class="ribosome_binding_site" /gene="oppC" /locus_tag="STM1744" /note="putative RBS for oppC; RegulonDB:STMS1H001925" gene complement(1838560..1839492) /gene="oppB" /locus_tag="STM1745" /db_xref="GeneID:1253264" CDS complement(1838560..1839480) /gene="oppB" /locus_tag="STM1745" /note="ABC superfamily (membrane); oligopeptide transport system permease protein OPPB. (SW:OPPB_SALTY)" /codon_start=1 /transl_table=11 /product="oligopeptide transport protein" /protein_id="NP_460704.1" /db_xref="GeneID:1253264" /translation="MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPE VLANIEAKYHLNDPIMTQYFSYLKQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGA AAFLLAVIIGVSAGVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQW LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRR IIFRHALKPALLPVLSYMGPAFVGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVL SLTILVGALTILFNAIVDVLYAVIDPKIRY" misc_feature complement(1838563..1839480) /gene="oppB" /locus_tag="STM1745" /note="oligopeptide ABC transporter permease OppB; Region: oppB; PRK09471" /db_xref="CDD:181886" regulatory complement(1839487..1839492) /regulatory_class="ribosome_binding_site" /gene="oppB" /locus_tag="STM1745" /note="putative RBS for oppB; RegulonDB:STMS1H001926" gene complement(1839602..1841396) /gene="oppA" /locus_tag="STM1746" /db_xref="GeneID:1253265" CDS complement(1839602..1841350) /gene="oppA" /locus_tag="STM1746" /note="ABC superfamily (periplasm); periplasmic oligopeptide-binding protein precursor. (SW:OPPA_SALTY)" /codon_start=1 /transl_table=11 /product="oligopeptide transport protein with chaperone properties" /protein_id="NP_460705.3" /db_xref="GeneID:1253265" /translation="MIAKAVTDLAVHHQCCTGTLTGLNRLVKTSNYNEWSTNTMSNIT KKSLIAAGILTALIAASAATAADVPAGVQLADKQTLVRNNGSEVQSLDPHKIEGVPES NVSRDLFEGLLISDVEGHPSPGVAEKWENKDFKVWTFHLRENAKWSDGTPVTAHDFVY SWQRLADPNTASPYASYLQYGHIANIDDIIAGKKPATDLGVKALDDHTFEVTLSEPVP YFYKLLVHPSVSPVPKSAVEKFGDKWTQPANIVTNGAYKLKNWVVNERIVLERNPQYW DNAKTVINQVTYLPISSEVTDVNRYRSGEIDMTYNNMPIELFQKLKKEIPNEVRVDPY LCTYYYEINNQKAPFNDVRVRTALKLALDRDIIVNKVKNQGDLPAYSYTPPYTDGAKL VEPEWFKWSQQKRNEEAKKLLAEAGFTADKPLTFDLLYNTSDLHKKLAIAVASIWKKN LGVNVNLENQEWKTFLDTRHQGTFDVARAGWCADYNEPTSFLNTMLSDSSNNTAHYKS PAFDKLIADTLKVADDTQRSELYAKAEQQLDKDSAIVPVYYYVNARLVKPWVGGYTGK DPLDNIYVKNLYIIKH" misc_feature complement(1839605..1841233) /gene="oppA" /locus_tag="STM1746" /note="oligopeptide ABC transporter substrate-binding protein OppA; Provisional; Region: PRK15104" /db_xref="CDD:185059" gene 1841295..1841615 /locus_tag="STM1747" /db_xref="GeneID:1253266" regulatory 1841295..1841300 /regulatory_class="ribosome_binding_site" /locus_tag="STM1747" /note="putative RBS for STM1747; RegulonDB:STMS1H001928" CDS 1841301..1841615 /locus_tag="STM1747" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_448165.1" /db_xref="GeneID:1253266" /translation="MQHWWCTARSVTAFAITDFIYSDDSFDRLSSIRYTTYLPTSHVI SDNHLNENTYQQCEIFYKNVWPKSIKCVSEPPIHFTILLTNSLLWKNPCPKKQLNNVK NL" regulatory complement(1841362..1841367) /regulatory_class="ribosome_binding_site" /gene="oppA" /locus_tag="STM1746" /note="putative RBS for oppA; RegulonDB:STMS1H001927" regulatory complement(1841369..1841377) /regulatory_class="minus_10_signal" /gene="oppA" /locus_tag="STM1746" /note="putative -10_signal for oppA; RegulonDB:STMLTH004504" regulatory complement(1841388..1841396) /regulatory_class="minus_35_signal" /gene="oppA" /locus_tag="STM1746" /note="putative -35_signal for oppA; RegulonDB:STMLTH004504" gene complement(1841998..1842657) /gene="ychE" /locus_tag="STM1748" /db_xref="GeneID:1253267" CDS complement(1841998..1842645) /gene="ychE" /locus_tag="STM1748" /note="similar to E. coli putative channel protein (AAC74324.1); Blastp hit to AAC74324.1 (215 aa), 93% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="putative MarC family integral membrane protein" /protein_id="NP_460707.1" /db_xref="GeneID:1253267" /translation="MIQPLFDFPVYFKFFIGLFALVNPVGIIPVFISMTSYQTATARN KTNLTANLSVAIILWSSLFLGDGILQLFGISIDSFRIAGGILVVTIAMSMISGKLGED KQNKQEKSETAIRESIGVVPLALPLMAGPGAISSTIVWGTRYHSIAHLLGFSVAIALF ALCCWGVFRMAPWLVRLLGQTGINVITRIMGLLLMALGIEFIVTGIKGIFPGLLN" misc_feature complement(1842001..1842642) /gene="ychE" /locus_tag="STM1748" /note="YchE family NAAT transporter; Region: PRK11111" /db_xref="CDD:236850" regulatory complement(1842652..1842657) /regulatory_class="ribosome_binding_site" /gene="ychE" /locus_tag="STM1748" /note="putative RBS for ychE; RegulonDB:STMS1H001929" protein_bind 1842858..1842872 /note="putative binding site for FruR, RegulonDB: STMS1H000185" /bound_moiety="FruR" gene 1843110..1845800 /gene="adhE" /locus_tag="STM1749" /db_xref="GeneID:1253268" regulatory 1843110..1843115 /regulatory_class="ribosome_binding_site" /gene="adhE" /locus_tag="STM1749" /note="putative RBS for adhE; RegulonDB:STMS1H001930" CDS 1843122..1845800 /gene="adhE" /locus_tag="STM1749" /EC_number="1.2.1.10" /EC_number="1.1.1.-" /note="similar to E. coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); Blastp hit to AAC74323.1 (891 aa), 97% identity in aa 1 - 891" /codon_start=1 /transl_table=11 /product="iron-dependent alcohol dehydrogenase of the multifunctional alcohol dehydrogenase AdhE" /protein_id="NP_460708.1" /db_xref="GeneID:1253268" /translation="MAVTNVAELNALVERVKKAQREYASFTQEQVDKIFRAAALAAAD ARIPLAKMAVAESGMGIVEDKVIKNHFASEYIYNAYKDEKTCGVLSEDDTFGTITIAE PIGIICGIVPTTNPTSTAIFKSLISLKTRNAIIFSPHPRAKEATNKAADIVLQAAIAA GAPKDLIGWIDQPSVELSNALMHHPDINLILATGGPGMVKAAYSSGKPAIGVGAGNTP VVIDETADIKRAVASVLMSKTFDNGVICASEQSVVVVDSVYDAVRERFASHGGYMLQG QELKAVQNVILKNGALNAAIVGQPAYKIAELAGFSVPETTKILIGEVTVVDESEPFAH EKLSPTLAMYRAKDFEEAVEKAEKLVAMGGIGHTSCLYTDQDNQPERVAYFGQMMKTA RILINTPASQGGIGDLYNFKLAPSLTLGCGSWGGNSISENVGPKHLINKKTVAKRAEN MLWHKLPKSIYFRRGSLPIALDEVITDGHKRALIVTDRFLFNNGYADQITSVLKAAGV ETEVFFEVEADPTLSVVRKGAELANSFKPDVIIALGGGSPMDAAKIMWVMYEHPETHF EELALRFMDIRKRIYKFPKMGVKAKMIAVTTTSGTGSEVTPFAVVTDDATGQKYPLAD YALTPDMAIVDANLVMDMPKSLCAFGGLDAVTHALEAYVSVLASEFSDGQALQALKLL KENLPASYHEGSKNPVARERVHSAATIAGIAFANAFLGVCHSMAHKLGSQFHIPHGLA NALLICNVIRYNANDNPTKQTAFSQYDRPQARRRYAEIADHLGLSAPGDRTAAKIEKL LAWLESIKAELGIPKSIREAGVQEADFLAHVDKLSEDAFDDQCTGANPRYPLISELKQ ILLDTYYGRDFTEGEVAAKKDVVAAPKAEKKAKKSA" misc_feature 1843122..1845707 /gene="adhE" /locus_tag="STM1749" /note="bifunctional acetaldehyde-CoA/alcohol dehydrogenase; Provisional; Region: PRK13805" /db_xref="CDD:237515" gene complement(1845997..1846634) /gene="tdk" /locus_tag="STM1750" /db_xref="GeneID:1253269" CDS complement(1845997..1846614) /gene="tdk" /locus_tag="STM1750" /EC_number="2.7.1.21" /note="similar to E. coli thymidine kinase (AAC74320.1); Blastp hit to AAC74320.1 (205 aa), 92% identity in aa 1 - 204" /codon_start=1 /transl_table=11 /product="thymidine kinase" /protein_id="NP_460709.1" /db_xref="GeneID:1253269" /translation="MAQLYFYYSAMNAGKSTALLQSSYNYQERGMRTVVYTAEIDDRF GAGKVSSRIGLSSPAKLFNQNTSLFEEIRAESARQTIHCVLVDESQFLTRQQVYQLSE VVDKLDIPVLCYGLRTDFRGELFVGSQYLLAWSDKLVELKTICFCGRKASMVLRLDQD GRPYNEGEQVVIGGNERYVSVCRKHYKDALEEGSLTAIQERHRHI" misc_feature complement(1846042..1846614) /gene="tdk" /locus_tag="STM1750" /note="thymidine kinase; Provisional; Region: PRK04296" /db_xref="CDD:235272" regulatory complement(1846629..1846634) /regulatory_class="ribosome_binding_site" /gene="tdk" /locus_tag="STM1750" /note="putative RBS for tdk; RegulonDB:STMS1H001931" gene 1847151..1847690 /gene="hns" /locus_tag="STM1751" /db_xref="GeneID:1253270" regulatory 1847151..1847159 /regulatory_class="minus_35_signal" /gene="hns" /locus_tag="STM1751" /note="putative -35_signal for hns; RegulonDB:STMLTH004505" regulatory 1847175..1847183 /regulatory_class="minus_10_signal" /gene="hns" /locus_tag="STM1751" /note="putative -10_signal for hns; RegulonDB:STMLTH004505" CDS 1847277..1847690 /gene="hns" /locus_tag="STM1751" /note="HU; BH2; H;, NS; pleiotropic regulator; DNA-binding protein H-NS (histone-like protein HLP-II) (protein H1)(protein B1). (SW:HNS_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding protein HLP-II" /protein_id="NP_460710.1" /db_xref="GeneID:1253270" /translation="MSEALKILNNIRTLRAQARECTLETLEEMLEKLEVVVNERREEE SAAAAEVEERTRKLQQYREMLIADGIDPNELLNSMAAAKSGTKAKRAARPAKYSYVDE NGETKTWTGQGRTPAVIKKAMEEQGKQLEDFLIKE" misc_feature 1847277..1847681 /gene="hns" /locus_tag="STM1751" /note="DNA-binding transcriptional regulator H-NS; Region: PRK10947" /db_xref="CDD:182858" gene complement(1847822..1848744) /gene="galU" /locus_tag="STM1752" /db_xref="GeneID:1253271" CDS complement(1847822..1848730) /gene="galU" /locus_tag="STM1752" /EC_number="2.7.7.9" /note="similar to E. coli glucose-1-phosphate uridylyltransferase (AAC74318.1); Blastp hit to AAC74318.1 (302 aa), 97% identity in aa 1 - 302" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate uridylyltransferase" /protein_id="NP_460711.1" /db_xref="GeneID:1253271" /translation="MAALNSKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDKPLIQY VVNECIAAGITEIVLVTHSSKNSIENHFDTSFELEAMLEKRVKRQLLEEVQSICPPHV TIMQVRQGLAKGLGHAVLCAHPVVGNEPVAVILPDVILDEYESDLSQDNLAEMIRRFD ETGNSQIMVEPVEDVTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRY VLSADIWALLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAF VEYGIRHNSLGAEFKAWLEEEMGIKK" misc_feature complement(1847825..1848730) /gene="galU" /locus_tag="STM1752" /note="UTP--glucose-1-phosphate uridylyltransferase GalU; Region: PRK13389" /db_xref="CDD:184021" misc_feature complement(order(1848005..1848007,1848089..1848091, 1848125..1848130,1848194..1848199,1848317..1848322, 1848326..1848328,1848386..1848397,1848404..1848406, 1848635..1848640,1848680..1848691)) /gene="galU" /locus_tag="STM1752" /note="active site" /db_xref="CDD:133021" misc_feature complement(order(1847885..1847890,1847897..1847905, 1847909..1847917,1847921..1847929,1847945..1847947, 1848017..1848019,1848200..1848202,1848395..1848397, 1848401..1848403,1848407..1848412,1848497..1848502, 1848512..1848514,1848518..1848526,1848530..1848532, 1848602..1848604,1848614..1848622,1848626..1848634, 1848644..1848652,1848656..1848670,1848677..1848679)) /gene="galU" /locus_tag="STM1752" /note="tetramer interface [active]" /db_xref="CDD:133021" regulatory complement(1848739..1848744) /regulatory_class="ribosome_binding_site" /gene="galU" /locus_tag="STM1752" /note="putative RBS for galU; RegulonDB:STMS1H001932" gene complement(1848933..1849959) /gene="hnr" /locus_tag="STM1753" /db_xref="GeneID:1253272" CDS complement(1848933..1849946) /gene="hnr" /locus_tag="STM1753" /note="mouse virulence protein; similar to E. coli Hnr protein (AAC74317.1); Blastp hit to AAC74317.1 (337 aa), 90% identity in aa 1 - 337" /codon_start=1 /transl_table=11 /product="Response regulator in protein turnover" /protein_id="NP_460712.1" /db_xref="GeneID:1253272" /translation="MTQPLVGKQILIVEDEPVFRSLLDSWFSSLGATTALAGDGVDAL ELMGRFTPDLMICDIAMPRMNGLKLVENLRNRGDQTPILVISATENMADIAKALRLGV EDVLLKPVKDLNRLRETVFACLYPNMFNSRVEEEERLFRDWDAMVSNPTAAAQLLQEL QPPVQQVISHCRINYRQLVSADQPGLVLDIAPLSDNELAFYCLDVTRAGDNGVLAALL LRALFNGLLQDQLGQQKHRLPELGALLKQVNHLLRQANLPGQFPLFVGYYHSELKNLI LVSAGLNATLNTGAHQVQISSGVPLGTLGNAYLNQLSQRCDSWQCQIWGAGGRLRLML SAE" misc_feature complement(1848936..1849844) /gene="hnr" /locus_tag="STM1753" /note="two-component system response regulator RssB; Region: PRK10693" /db_xref="CDD:182652" regulatory complement(1849954..1849959) /regulatory_class="ribosome_binding_site" /gene="hnr" /locus_tag="STM1753" /note="putative RBS for hnr; RegulonDB:STMS1H001933" gene complement(1850037..1850942) /gene="ychK" /locus_tag="STM1754" /db_xref="GeneID:1253273" CDS complement(1850037..1850942) /gene="ychK" /locus_tag="STM1754" /note="similar to E. coli orf, hypothetical protein (AAC74316.1); Blastp hit to AAC74316.1 (314 aa), 83% identity in aa 14 - 314" /codon_start=1 /transl_table=11 /product="putative phosphoesterase" /protein_id="NP_460713.1" /db_xref="GeneID:1253273" /translation="MRKMKIGLALGSGAARGWSHIGVIKALKQAGIDIDIVAGCSIGS LVGAAYACNKLSALEQWVCSFRYWDVLRLMDVSWGRGGLLRGERVFNHYRDIMPVTDF DHCSRRFGAVATNLSTGRELWFTEGDLHLAVRASCSMPGLMSPVEHNGYWLVDGAVVN PVPVSLTRALGADIVIAVDLQHDAHLMQQDLLSVNVGNINEESDDALPWHKRLKERFS SLTSRRGVSSPGAMEIMTTSIQVLENRLKRNRMAGDPPDILIQPFCPQISTLDFHRAH AAIAAGQLAVEKKMDELIPLVRTDV" misc_feature complement(1850043..1850942) /gene="ychK" /locus_tag="STM1754" /note="patatin-like phospholipase RssA; Region: PRK10279" /db_xref="CDD:182352" misc_feature complement(order(1850478..1850480,1850820..1850822, 1850895..1850897,1850901..1850906)) /gene="ychK" /locus_tag="STM1754" /note="active site" /db_xref="CDD:132866" misc_feature complement(1850814..1850828) /gene="ychK" /locus_tag="STM1754" /note="nucleophile elbow; other site" /db_xref="CDD:132866" gene 1851040..1851511 /gene="ychJ" /locus_tag="STM1755" /db_xref="GeneID:1253274" regulatory 1851040..1851045 /regulatory_class="ribosome_binding_site" /gene="ychJ" /locus_tag="STM1755" /note="putative RBS for ychJ; RegulonDB:STMS1H001934" CDS 1851053..1851511 /gene="ychJ" /locus_tag="STM1755" /note="similar to E. coli orf, hypothetical protein (AAC74315.1); Blastp hit to AAC74315.1 (152 aa), 78% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460714.1" /db_xref="GeneID:1253274" /translation="MSQPCPCGSADEYSLCCGRIVSGERVAPDPSHLMRSRYCAFVMK DADYLIKSWHPTCNAAAFRDDIIAGFANTRWLGLTIFEHTWSEAENTGYVSFIARFSE QGKNGAIIERSRFIKENGQWYYIDGTRPQLGRNDPCPCGSGKKFKKCCGQ" misc_feature 1851053..1851508 /gene="ychJ" /locus_tag="STM1755" /note="hypothetical protein; Provisional; Region: PRK01617" /db_xref="CDD:234966" gene 1851546..1852404 /gene="purU" /locus_tag="STM1756" /db_xref="GeneID:1253275" regulatory 1851546..1851551 /regulatory_class="ribosome_binding_site" /gene="purU" /locus_tag="STM1756" /note="putative RBS for purU; RegulonDB:STMS1H001935" CDS 1851562..1852404 /gene="purU" /locus_tag="STM1756" /EC_number="3.5.1.10" /note="similar to E. coli formyltetrahydrofolate deformylase; for purT-dependent FGAR synthesis (AAC74314.1); Blastp hit to AAC74314.1 (280 aa), 96% identity in aa 1 - 280" /codon_start=1 /transl_table=11 /product="formyltetrahydrofolate hydrolase" /protein_id="NP_460715.1" /db_xref="GeneID:1253275" /translation="MQSLQRKVLRTICPDQKGLIARITNICYKHELNIVQNNEFVDHR TGRFFMRTELEGIFNDSTLLADLDSALPEGSVRELNPAGRRRVVILVTKEAHCLGDLL MKANYGGLDVEIAAVIGNHETLRSLVERFEIPFELVSHEGLTREEHDTKMADAIDAHQ PDYVVLAKYMRVLTPGFVARFPNKIINIHHSFLPAFIGARPYHQAYERGVKIIGATAH YVNDNLDEGPIIMQDVIHVDHTYTAEDMMRAGRDVEKNVLSRALYQVLAQRVFVYGNR TIIL" misc_feature 1851562..1852401 /gene="purU" /locus_tag="STM1756" /note="formyltetrahydrofolate deformylase; Reviewed; Region: purU; PRK06027" /db_xref="CDD:235676" gene 1852564..1852645 /gene="tyrT" /locus_tag="STM1757" /db_xref="GeneID:1253276" tRNA 1852564..1852645 /gene="tyrT" /locus_tag="STM1757" /product="tRNA-Tyr" /db_xref="GeneID:1253276" gene 1852677..1852819 /gene="rtT" /locus_tag="STM1758" /db_xref="GeneID:1253277" ncRNA 1852677..1852819 /ncRNA_class="other" /gene="rtT" /locus_tag="STM1758" /product="regulatory RNA" /db_xref="GeneID:1253277" gene 1852853..1852934 /gene="tyrV" /locus_tag="STM1759" /db_xref="GeneID:1253278" tRNA 1852853..1852934 /gene="tyrV" /locus_tag="STM1759" /product="tRNA-Tyr" /db_xref="GeneID:1253278" gene complement(1853720..1855255) /locus_tag="STM1760" /db_xref="GeneID:1253279" CDS complement(1853720..1855249) /locus_tag="STM1760" /note="similar to E. coli orf, hypothetical protein (AAC73745.1); Blastp hit to AAC73745.1 (327 aa), 31% identity in aa 16 - 305, 33% identity in aa 29 - 273, 32% identity in aa 19 - 307, 33% identity in aa 47 - 320, 30-1073758628dentity in aa 22 - 312, 29% identity in aa 15 - 312, 34-1073758654dentity in aa 12 - 166" /codon_start=1 /transl_table=11 /product="putative TPR repeat protein" /protein_id="NP_460716.1" /db_xref="GeneID:1253279" /translation="MRFSSIFKIIILNIFISKMAHAAVCEERYPADSEECQYVQELEQ KAEQGDESAQFSLGSWYAEGRYVKPDYKLAIKWLEKAGKQGSDFSYFILGYHYNYGEN FPLSRQKALEWYRKAAELGDSSTQEILGDAYMYGDGFPQNTQLALEWYRKAASPTNDA GVVRGQGSASSAQFKLGVMYAHGQGVPQDYQQTAILMRKAAENMYYPAQLYLGVAYFY GEGVPQDYRQAVYWLNEGIPGSYTPGHIPLNALYDKAHPADRVHSQTWYRKTAQRVMA KVQYNFGVWYYNGYHLLKDHNLALEWYRRAAAQGLAEAQDAIGVMFMQGEGVSQDYQQ ALAWYRKAARQGLPAAQTHLGIMSAFGRGVAQSDRQAIAWYRKAAKQDFAKAQYQLGV AYSTGRGVPENSRNALKWYLKAAEQGFTPAQSALGEIYAHGRQGVPKDNKQAYIWYYM ASMYTEKSKDDCSALIAERNRLKGTLTPDQLSETYAAFNLIWRKIDQSKEAKKIARKK Y" misc_feature complement(1854551..1855195) /locus_tag="STM1760" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature complement(1854953..1855042) /locus_tag="STM1760" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(1854845..1854928) /locus_tag="STM1760" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(1854704..1854826) /locus_tag="STM1760" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(1854596..1854685) /locus_tag="STM1760" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(1853897..1854610) /locus_tag="STM1760" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature complement(1854278..1854367) /locus_tag="STM1760" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(1854170..1854259) /locus_tag="STM1760" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(1854062..1854151) /locus_tag="STM1760" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" regulatory complement(1855250..1855255) /regulatory_class="ribosome_binding_site" /locus_tag="STM1760" /note="putative RBS for STM1760; RegulonDB:STMS1H001936" gene complement(1855491..1856184) /gene="narI" /locus_tag="STM1761" /db_xref="GeneID:1253280" CDS complement(1855491..1856168) /gene="narI" /locus_tag="STM1761" /EC_number="1.7.99.4" /note="similar to E. coli nitrate reductase 1, cytochrome b(NR), gamma subunit (AAC74311.1); Blastp hit to AAC74311.1 (225 aa), 92% identity in aa 1 - 225" /codon_start=1 /transl_table=11 /product="nitrate reductase 1, cytochrome b(NR), gamma subunit" /protein_id="NP_460717.1" /db_xref="GeneID:1253280" /translation="MHFLNMFFFDIYPYIAGSVFLIGSWLRYDYGQYTWRAASSQMLD RKGMNLASNLFHIGILGIFAGHFLGMLTPHWMYEAFLPVDVKQKMAMIAGGACGVLTL VGGILLLKRRLFSPRVRATTTGADILILSLLVIQCALGLLTIPFSAQHMDGSEMMKLV GWAQSVVTFHGGASAHLDGVAFIFRMHLVLGMTLFLLFPFSRLVHIWSVPVEYLTRKY QIVRARH" misc_feature complement(1855494..1856165) /gene="narI" /locus_tag="STM1761" /note="respiratory nitrate reductase, gamma subunit; Region: narI; TIGR00351" /db_xref="CDD:273030" gene complement(1856168..1856892) /gene="narJ" /locus_tag="STM1762" /db_xref="GeneID:1253281" CDS complement(1856168..1856878) /gene="narJ" /locus_tag="STM1762" /EC_number="1.7.99.4" /note="chaperone required for molybdenum cofactor assembly in nitrate reductase 1; similar to E. coli nitrate reductase 1, delta subunit, assembly function (AAC74310.1); Blastp hit to AAC74310.1 (236 aa), 88% identity in aa 1 - 236" /codon_start=1 /transl_table=11 /product="nitrate reductase 1, delta subunit" /protein_id="NP_460718.1" /db_xref="GeneID:1253281" /translation="MIELVIVSRLLEYPDAALWQHQQELFDALASSENLDKEDAQTLG VFLRDLTAQDLLDVQAAYSELFDRGRATSLLLFEHVHGESRDRGQAMVDLMAQYEQHG LQLDSRELPDHLPLYLEYLAQLPKSEALGGLQDIAPILALLSARLQQRDSRYAVLFDL LLKLANTVIDSDKVAEKIANEARDDTPQALDAVWEEEQVKFFADQGCGESEISAHQRR FAGAVAPQYLNITTGGQH" misc_feature complement(1856177..1856878) /gene="narJ" /locus_tag="STM1762" /note="chaperone protein TorD; Validated; Region: torD; cl00958" /db_xref="CDD:470012" regulatory complement(1856179..1856184) /regulatory_class="ribosome_binding_site" /gene="narI" /locus_tag="STM1761" /note="putative RBS for narI; RegulonDB:STMS1H001937" gene complement(1856875..1858424) /gene="narH" /locus_tag="STM1763" /db_xref="GeneID:1253282" CDS complement(1856875..1858410) /gene="narH" /locus_tag="STM1763" /EC_number="1.7.99.4" /note="similar to E. coli nitrate reductase 1, beta subunit (AAC74309.1); Blastp hit to AAC74309.1 (512 aa), 92% identity in aa 1 - 511" /codon_start=1 /transl_table=11 /product="nitrate reductase 1, FeS (beta) subunit" /protein_id="NP_460719.1" /db_xref="GeneID:1253282" /translation="MKIRSQVGMVLNLDKCIGCHTCSVTCKNVWTSREGMEYAWFNNV ESKPGVGFPNDWENQEKWKGGWIRKINGKLQPRMGNRALLLGKIFANPHLPGIDDYYE PFDYDYQNLHTAPESKHQPIARPRSLITGQRMDKITSGPNWEEILGGEFEKRAKDQNF ENMQKAMYGQFENTFMMYLPRLCEHCLNPACVATCPSGAIYKREEDGIVLIDQDKCRG WRMCITGCPYKKIYFNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDA DAIESAASTENEKDLYQRQLDVFLDPNDPAVIEQALKDGVPQSVIDAAQQSPVYKMAI DWKLALPLHPEYRTLPMVWYVPPLSPIQSAADAGELGSNGILPDVDSLRIPVQYLANL LTAGDTQPVLLALKRMLAMRHYKRAETVDGKVDTRALEEVGLSEAQAQEMYRYLAIAN YEDRFVVPSSHRELARDAFPEKSGCGFTFGDGCHGSDTKFNLFNSRRIDAVDVTSKTE PHA" misc_feature complement(1856959..1858410) /gene="narH" /locus_tag="STM1763" /note="Nitrate reductase beta subunit [Energy production and conversion, Inorganic ion transport and metabolism]; Region: NarY; COG1140" /db_xref="CDD:440755" regulatory complement(1856887..1856892) /regulatory_class="ribosome_binding_site" /gene="narJ" /locus_tag="STM1762" /note="putative RBS for narJ; RegulonDB:STMS1H001938" gene complement(1858407..1862248) /gene="narG" /locus_tag="STM1764" /db_xref="GeneID:1253283" CDS complement(1858407..1862150) /gene="narG" /locus_tag="STM1764" /EC_number="1.7.99.4" /note="similar to E. coli nitrate reductase 1, alpha subunit (AAC74308.1); Blastp hit to AAC74308.1 (1247 aa), 95% identity in aa 1 - 1247" /codon_start=1 /transl_table=11 /product="nitrate reductase 1, alpha subunit" /protein_id="NP_460720.1" /db_xref="GeneID:1253283" /translation="MSKFLDRFRYFKQKGETFADGHGQLLETNRDWEDGYRQRWQHDK IVRSTHGVNCTGSCSWKIYVKNGLVTWETQQTDYPRTRPDMPNHEPRGCPRGASYSWY LYSANRLKYPLMRKRLMKMWREAKKLHRDPVEAWASIIEDADKAKSFKQARGRGGFVR SSWQEVNELIAASNVYTVKTYGPDRVAGFSPIPAMSMVSYASGARYLSLIGGTCLSFY DWYCDLPPASPQTWGEQTDVPESADWYNSSYIIAWGSNVPQTRTPDAHFFTEVRYKGT KTVAVTPDYAEIAKLCDLWLAPKQGTDAAMALAMGHVMLREFHLDNPRQYFTDYVRRY TDMPMLVMLEERDGYYAAGRMLRAADLVDSLGQENNPEWKTVAINSNGEMVAPNGSIG FRWGEKGKWNLEQRDGTTGAETELQLSLLGSQDEIADVGFPYFGGEGSEYFNHVALDN VLLHKLPAKRLQLADGSSALVTTVYDLTMANYGLERGLNDENCAASYDDTKAYTPAWA EQITGVPRAQIIRIAREFADNADKTHGRSMIIVGAGLNHWYHLDMNYRGLINMLVFCG CVGQSGGGWAHYVGQEKLRPQTGWQPLAFALDWQRPARHMNSTSYFYNHSSQWRYETV TAEELLSPMADKSRYSGHLIDFNVRAERMGWLPSAPQLGTNPLYIAREAEKAGMTPVD YTVKSLKEGSIRFAAEQPENGKNHPRNLFIWRSNLLGSSGKGHEYMLKYLLGTEHGIQ GLDLGKQGGVKPEEVEWRDNGLDGKLDLVVTLDFRLSSTCLYSDIVLPTATWYEKDDM NTSDMHPFIHPLSAAVDPAWESKSDWEIYKGIAKKFSEVCVGHLGKETDVVTLPIQHD SAAELAQPLDVKDWKKGECDLIPGKTAPHIMTVERDYPATYERFTSIGPLMEKIGNGG KGIAWNTQSEMDLLRKLNYTKADGPAKGQPMLNTAIDAAEMILTLAPETNGQVAVKAW AALSEFTGRDHTHLATNKEEEKIRFRDIQAQPRKIISSPTWSGLEDEHVSYNAGYTNV HELIPWRTLSGRQQLYQDHQWMRDFGESLLVYRPPIDTRSVKAVMGRKSNGNPEKALN FLTPHQKWGIHSTYSDNLLMLTLSRGGPIVWMSETDAKDLGIEDNDWIEVFNSNGALT ARAVVSQRVPAGMTMMYHAQERIVNLPGSEITQQRGGIHNSVTRITPKPTHMIGGYAQ LAYGFNYYGTVGSNRDEFVVVRKMKNINWLDGEGNDQVQESVK" misc_feature complement(1858443..1862147) /gene="narG" /locus_tag="STM1764" /note="Nitrate reductase alpha subunit [Energy production and conversion, Inorganic ion transport and metabolism]; Region: NarG; COG5013" /db_xref="CDD:444037" regulatory complement(1858419..1858424) /regulatory_class="ribosome_binding_site" /gene="narH" /locus_tag="STM1763" /note="putative RBS for narH; RegulonDB:STMS1H001939" regulatory complement(1862158..1862163) /regulatory_class="ribosome_binding_site" /gene="narG" /locus_tag="STM1764" /note="putative RBS for narG; RegulonDB:STMS1H001940" regulatory complement(1862221..1862229) /regulatory_class="minus_10_signal" /gene="narG" /locus_tag="STM1764" /note="putative -10_signal for narG; RegulonDB:STMLTH004506" protein_bind complement(1862234..1862256) /note="putative binding site for FNR, RegulonDB: STMS1H000172" /bound_moiety="FNR" regulatory complement(1862240..1862248) /regulatory_class="minus_35_signal" /gene="narG" /locus_tag="STM1764" /note="putative -35_signal for narG; RegulonDB:STMLTH004506" protein_bind complement(1862308..1862322) /note="putative binding site for IHF, RegulonDB: STMS1H000234" /bound_moiety="IHF" protein_bind complement(1862378..1862398) /note="putative binding site for NarL, RegulonDB: STMS1H000320" /bound_moiety="NarL" gene complement(1862538..1864130) /gene="narK" /locus_tag="STM1765" /db_xref="GeneID:1253284" CDS complement(1862538..1863935) /gene="narK" /locus_tag="STM1765" /note="similar to E. coli nitrite extrusion protein (AAC74307.1); Blastp hit to AAC74307.1 (463 aa), 94% identity in aa 1 - 462" /codon_start=1 /transl_table=11 /product="MFS superfamily nitrite extrusion protein" /protein_id="NP_460721.1" /db_xref="GeneID:1253284" /translation="MSHLSAPERATGAVITEWRPEDPAFWQQRGHRVASRNLWISVPC LLLAFCVWMLFSAVAVNLPKVGFNFTTDQLFMLTALPSVSGALLRVPYSFMVPLFGGR RWTAFSTGILIVPCVWLGFAVQDTSTPFSTFIIISLLCGFAGANFASSMANISFFFPK QKQGGALGLNGGLGNMGVSVMQLVAPLVVSLSIFAAFGSHGVEQPDGSQLYLANAAWI WVPFLAIFTLAAWFGMNELATSKASLKEQLPVLKRGHLWIMSLLYLATFGSFIGFSAG FAMLSKTQFPDVQILHYAFFGPFIGALARSAGGAISDRLGGTRVTLINFVLMAIFSGL LFLTLPTGGVGGSFIAFYGVFLALFLTAGLGSGSTFQMISVIFRKLTMDRVKAEGGSE ERAMREAATDTAAALGFISAIGAIGGFFIPKAFGSSLALTGSPVGAMKVFLIFYIACV VITWAVYGRHSKNKK" misc_feature complement(1862541..1863914) /gene="narK" /locus_tag="STM1765" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature complement(order(1862682..1862684,1862691..1862696, 1862703..1862708,1862715..1862717,1862826..1862828, 1862838..1862840,1862850..1862855,1863021..1863023, 1863033..1863035,1863111..1863113,1863120..1863128, 1863135..1863140,1863147..1863149,1863402..1863404, 1863411..1863416,1863423..1863425,1863480..1863482, 1863489..1863497,1863501..1863506,1863669..1863671, 1863768..1863770,1863777..1863782,1863789..1863794)) /gene="narK" /locus_tag="STM1765" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340899" regulatory complement(1863939..1863944) /regulatory_class="ribosome_binding_site" /gene="narK" /locus_tag="STM1765" /note="putative RBS for narK; RegulonDB:STMS1H001941" protein_bind complement(1863986..1864010) /gene="narK" /locus_tag="STM1765" /note="putative binding site for FNR, RegulonDB: STMS1H000167" /bound_moiety="FNR" protein_bind complement(1864040..1864060) /gene="narK" /locus_tag="STM1765" /note="putative binding site for NarL, RegulonDB: STMS1H000306" /bound_moiety="NarL" regulatory complement(1864103..1864111) /regulatory_class="minus_10_signal" /gene="narK" /locus_tag="STM1765" /note="putative -10_signal for narK; RegulonDB:STMLTH004507" regulatory complement(1864122..1864130) /regulatory_class="minus_35_signal" /gene="narK" /locus_tag="STM1765" /note="putative -35_signal for narK; RegulonDB:STMLTH004507" protein_bind complement(1864136..1864156) /note="putative binding site for NarL, RegulonDB: STMS1H000315" /bound_moiety="NarL" gene 1864160..1866072 /gene="narX" /locus_tag="STM1766" /db_xref="GeneID:1253285" regulatory 1864160..1864168 /regulatory_class="minus_35_signal" /gene="narX" /locus_tag="STM1766" /note="putative -35_signal for narX; RegulonDB:STMLTH004508" regulatory 1864186..1864194 /regulatory_class="minus_10_signal" /gene="narX" /locus_tag="STM1766" /note="putative -10_signal for narX; RegulonDB:STMLTH004508" protein_bind complement(1864260..1864284) /note="putative binding site for FNR, RegulonDB: STMS1H000171" /bound_moiety="FNR" regulatory 1864268..1864273 /regulatory_class="ribosome_binding_site" /gene="narX" /locus_tag="STM1766" /note="putative RBS for narX; RegulonDB:STMS1H001942" CDS 1864276..1866072 /gene="narX" /locus_tag="STM1766" /EC_number="2.7.3.-" /note="senses nitrate/nitrite; regulates anaerobic respiration and fermentation; similar to E. coli nitrate/nitrate sensor, histidine protein kinase acts on NarL regulator (AAC74306.1); Blastp hit to AAC74306.1 (598 aa), 86% identity in aa 1 - 598" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two component regulatory system with NarL" /protein_id="NP_460722.1" /db_xref="GeneID:1253285" /translation="MFKRCFSPLTLVNQLALIVMLSTAIGVAGMAVSGWLVQGVQGSA HAINKAGSLRMQSYRLLAAVPLDAKDQKLLDEMEQTAFSPELTRAAERDGQQKQLKAL QDYWHNELSPGLQHAQNAHAVAEDVTRFVAGLDRLVTSFDHTTELRIERVVLVHRVMA IFMALLLVFTIIWLRVRLLQPWKQLLSMARAVSQRDFTQRANISGRNEMAALGSALNN MSEELAESYAVLEQRVQEKTAGLEHKNQILSFLWQANRRLHSQAPLCERLSPVLNGLQ NLTQLHDIELRVYDLEDEDNHQEFTCQSDISCDDKGCHLCPRSALPMINGGTTLKWRL TDSHTQYGILLATLPYGRHLSHDQQQLVDTLVEQLTATLALDRHQERQQQLIVMEERA TIARELHDSIAQSLSCMKMQVSCLQMQGDVLPESSRELLSQIRNELNCSWAQLRELLT TFRLQLTEPGLRPALEASCQEFSARFGFTVKLDYQLPPRLVPSHQAIHLLQIAREALS NALKHSHADDVVVTVTQCGKQVKLKVQDNGCGVPENAERSNHYGMIIMRDRAQSLRGD CQVRRRETGGTEVTVTFIPETNFTETQGDTHE" misc_feature 1864363..1866069 /gene="narX" /locus_tag="STM1766" /note="nitrate/nitrite two-component system sensor histidine kinase NarX; Region: PRK10600" /db_xref="CDD:182581" gene 1866052..1866715 /gene="narL" /locus_tag="STM1767" /db_xref="GeneID:1253286" regulatory 1866052..1866057 /regulatory_class="ribosome_binding_site" /gene="narL" /locus_tag="STM1767" /note="putative RBS for narL; RegulonDB:STMS1H001943" CDS 1866065..1866715 /gene="narL" /locus_tag="STM1767" /note="regulates anaerobic respiration and fermentation (LuxR/UhpA family); similar to E. coli pleiotrophic regulation of anaerobic respiration: response regulator for nar, frd, dms and tor genes (AAC74305.1); Blastp hit to AAC74305.1 (216 aa), 96% identity in aa 1 - 216" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with NarX (or NarQ)" /protein_id="NP_460723.1" /db_xref="GeneID:1253286" /translation="MNNQEPATILLIDDHPMLRTGVKQLVSMAPDISVVGEASNGEQG IDLAESLDPDLILLDLNMPGMNGLETLDKLREKALSGRIVVFSVSNHEEDVVTALKRG ADGYLLKDMEPEDLLKALQQAAAGEMVLSEALTPVLAASLRANRATTDRDVTQLTPRE RDILKLIAQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVEAAVWVHQERIF" misc_feature 1866065..1866712 /gene="narL" /locus_tag="STM1767" /note="transcriptional regulator NarL; Provisional; Region: PRK10651" /db_xref="CDD:182619" gene complement(1866716..1868153) /gene="ychP" /locus_tag="STM1768" /db_xref="GeneID:1253287" CDS complement(1866716..1868140) /gene="ychP" /locus_tag="STM1768" /note="similar to E. coli putative factor (AAC74304.1); Blastp hit to AAC74304.1 (417 aa), 77% identity in aa 1 - 417" /codon_start=1 /transl_table=11 /product="putative invasin" /protein_id="NP_460724.3" /db_xref="GeneID:1253287" /translation="MSFLLSFVVEVADTLSRIVFRSFSLSLLLLAASGTIRAQAQDPF TQNRLPDLGMMPESHEGEKHFAEMAKAFGEASMKNNDLDTGEQARQFAFGQVRDVVSE QVNQQLESWLSAWGSASVDINVDNEGHFNGSRGSWFIPLQDKQRYLTWSQLGLTQQTD GLVSNIGVGQRWAQDGWLLGYNTFYDNLLDENLQRAGFGAEAWGEYLRLSANYYQPFA DWQTHTATLEQRMARGYDINAQMRLPFYQHINTSVSLEQYFGDSVDLFDSGTGYHNPV ALKLGLNYTPVPLLTMTAQHKQGESGVSQNNLGLTLNYRFGVPLKKQLAASEVAQSQS LRGSRYDTPQRNSLPTMEYRQRKTLTVFLATPPWDLTPGETVALKLQVRSVHGIRHLS WQGDTQALSLTAGTDTRSTEGWTIIMPAWDHREGAANRWRLSVVVEDEKGQRVSSNEI TLALTEPFITMPDDNPHWQPFQEQ" misc_feature complement(1866731..1868101) /gene="ychP" /locus_tag="STM1768" /note="YchO/YchP family invasin; Region: PRK10177" /db_xref="CDD:236661" regulatory complement(1868148..1868153) /regulatory_class="ribosome_binding_site" /gene="ychP" /locus_tag="STM1768" /note="putative RBS for ychP; RegulonDB:STMS1H001944" gene 1868300..1868670 /gene="ychN" /locus_tag="STM1769" /db_xref="GeneID:1253288" regulatory 1868300..1868305 /regulatory_class="ribosome_binding_site" /gene="ychN" /locus_tag="STM1769" /note="putative RBS for ychN; RegulonDB:STMS1H001945" CDS 1868317..1868670 /gene="ychN" /locus_tag="STM1769" /note="involved in intracellular sulfur reduction; similar to E. coli orf, hypothetical protein (AAC74303.1); Blastp hit to AAC74303.1 (117 aa), 92% identity in aa 1 - 117" /codon_start=1 /transl_table=11 /product="putative ACR protein" /protein_id="NP_460725.1" /db_xref="GeneID:1253288" /translation="MQNIVIIANGAAYGSESLFNSLRLAIALREQESHLDLRLFLMSD AVTAGLRGQKPAEGYNIQQMLEILTAQNVPVKLCKTCADGRGITPLPLIDGVEIGTLV ELAQWTLAADKVLTF" misc_feature 1868320..1868667 /gene="ychN" /locus_tag="STM1769" /note="Sulfur relay (sulfurtransferase) complex TusBCD TusD component, DsrE family [Inorganic ion transport and metabolism]; Region: DsrE; COG1553" /db_xref="CDD:441162" gene complement(1868750..1868989) /gene="chaB" /locus_tag="STM1770" /db_xref="GeneID:1253289" CDS complement(1868750..1868980) /gene="chaB" /locus_tag="STM1770" /note="similar to E. coli cation transport regulator (AAC74301.1); Blastp hit to AAC74301.1 (76 aa), 84% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="cation transport regulator" /protein_id="NP_460726.1" /db_xref="GeneID:1253289" /translation="MPYKAKSDLPDNVRNVLPAHAQDIYKEAFNSAWEQYKDKADRRD DASREETAHKVAWAAVKNDYEKGEDDKWHKKK" misc_feature complement(1868756..1868980) /gene="chaB" /locus_tag="STM1770" /note="Cation transport regulator ChaB [Inorganic ion transport and metabolism]; Region: ChaB; COG4572" /db_xref="CDD:443629" regulatory complement(1868984..1868989) /regulatory_class="ribosome_binding_site" /gene="chaB" /locus_tag="STM1770" /note="putative RBS for chaB; RegulonDB:STMS1H001946" gene 1869234..1870347 /gene="chaA" /locus_tag="STM1771" /db_xref="GeneID:1253290" regulatory 1869234..1869239 /regulatory_class="ribosome_binding_site" /gene="chaA" /locus_tag="STM1771" /note="putative RBS for chaA; RegulonDB:STMS1H001947" CDS 1869247..1870347 /gene="chaA" /locus_tag="STM1771" /note="similar to E. coli sodium-calcium/proton antiporter (AAC74300.1); Blastp hit to AAC74300.1 (366 aa), 93% identity in aa 1 - 366" /codon_start=1 /transl_table=11 /product="CaCA family, sodium-calcium/proton antiporter" /protein_id="NP_460727.1" /db_xref="GeneID:1253290" /translation="MTHACEAVKTRHKETSLIFPVLALVVLFLWGSSQSLPVVIGINI LALIGILSSAFSVVRHADVLAHRLGEPYGSLILSLSVVILEVSLISALMATGDAAPTL MRDTLYSIIMIVTGGLVGFSLLLGGRKFATQYMNLFGIKQYLIALFPLAIIVLVFPMA LPQANFSTGQALLVALISAAMYGVFLLIQTKTHQSLFIYEHEDEGDDDNPHHGKPSAH SSGWHTVWLLIHLIAVIAVTKMNASPLEALLTSMNAPVAFTGFLVALLILSPEGLGAL KAVLNNQVQRAMNLFFGSVLATISLTVPVVTLIAWATGNDLVFGLGAPEMVVMVASLV LCHISFSTGRTNVLNGAAHLALFAAYLMTIFA" misc_feature 1869247..1870344 /gene="chaA" /locus_tag="STM1771" /note="sodium-potassium/proton antiporter ChaA; Region: PRK10599" /db_xref="CDD:182580" gene complement(1870401..1871266) /gene="kdsA" /locus_tag="STM1772" /db_xref="GeneID:1253291" CDS complement(1870401..1871255) /gene="kdsA" /locus_tag="STM1772" /EC_number="2.5.1.55" /note="similar to E. coli 2-dehydro-3-deoxyphosphooctulonate aldolase (AAC74299.1); Blastp hit to AAC74299.1 (284 aa), 93% identity in aa 1 - 282" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonic acid 8-P synthetase" /protein_id="NP_460728.1" /db_xref="GeneID:1253291" /translation="MKQKVVNIGDIKVANDLPFVLFGGMNVLESRDLAMRICEHYVTV TQKLGIPYVFKASFDKANRSSIHSYRGPGLEEGMKIFQELKQTFGVKVITDVHEASQA QPVADVVDVIQLPAFLARQTDLVEAMAKTGAVINVKKPQFVSPGQMGNIVDKFHEGGN DKVILCDRGANFGYDNLVVDMLGFSVMKKVSGNSPVIFDVTHALQCRDPFGAASGGRR GQVTELARAGMAVGLAGLFLESHPDPANAKCDGPSALPLAKLEQFLTQIKAIDDLVKS FDELDTEN" misc_feature complement(1870434..1871231) /gene="kdsA" /locus_tag="STM1772" /note="2-dehydro-3-deoxyphosphooctonate aldolase; Provisional; Region: PRK05198" /db_xref="CDD:235363" regulatory complement(1871261..1871266) /regulatory_class="ribosome_binding_site" /gene="kdsA" /locus_tag="STM1772" /note="putative RBS for kdsA; RegulonDB:STMS1H001948" gene complement(1871293..1872114) /gene="ychA" /locus_tag="STM1773" /db_xref="GeneID:1253292" CDS complement(1871293..1872102) /gene="ychA" /locus_tag="STM1773" /note="similar to E. coli orf, hypothetical protein (AAC74298.1); Blastp hit to AAC74298.1 (269 aa), 85% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_460729.1" /db_xref="GeneID:1253292" /translation="MRSLADFEFNNAPLCDGMILASEMIRLDFPTQFVYDELERLVSL AQEEISQLLSQDEQLEKLLALFYGEWGFTDSRGVYRLSDALWLDKVLKKRQGSAVSLG AILLWIANRLDLPLVPVIFPTQLILRIESLEGEMWLINPFNGETLDEHTLEVWLKGNI SPVAELFNEDLDEADNAEVIRKLLDTLKSSLMEERQMELALRVSEALLQFNPEDPYEI RDRGLIYAQLECEHVALTDLSYFVEQCPEDPISEMIRAQINTIAHKQIVLH" misc_feature complement(1871296..1872102) /gene="ychA" /locus_tag="STM1773" /note="tetratricopeptide repeat-containing protein; Region: PRK10941" /db_xref="CDD:182854" misc_feature complement(1871473..1871544) /gene="ychA" /locus_tag="STM1773" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276810" misc_feature complement(1871371..1871463) /gene="ychA" /locus_tag="STM1773" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276810" gene complement(1872106..1872562) /gene="sirC" /locus_tag="STM1774" /db_xref="GeneID:1253293" CDS complement(1872106..1872495) /gene="sirC" /locus_tag="STM1774" /note="transcriptional regulator (gi|4887121)" /codon_start=1 /transl_table=11 /product="regulator of invasion genes" /protein_id="NP_460730.1" /db_xref="GeneID:1253293" /translation="MTIAMLLTLHLICVALSVSLFVARYWWRYCGHALAAARWTRIVP PVIDTLLLLSGIGLIVKTHILPFTESGSWLTEKLFGVIIYIVLGFIALDYRQARSQQA RFIAFPLALVVLYIIIKLATTKIPLLG" misc_feature complement(1872109..1872495) /gene="sirC" /locus_tag="STM1774" /note="SirB family protein; Region: PRK10278" /db_xref="CDD:182351" regulatory complement(1872109..1872114) /regulatory_class="ribosome_binding_site" /gene="sirC" /locus_tag="STM1774" /note="putative RBS for ychA; RegulonDB:STMS1H001949" gene complement(1872492..1873333) /gene="hemK" /locus_tag="STM1775" /db_xref="GeneID:1253294" CDS complement(1872492..1873325) /gene="hemK" /locus_tag="STM1775" /note="HEMK protein. (SW:HEMK_SALTY)" /codon_start=1 /transl_table=11 /product="putative protoporphyrinogen oxidase" /protein_id="NP_460731.1" /db_xref="GeneID:1253294" /translation="MDFQHWLHEAVNQLRDSDSPRRDAEILLEYVTGKGRTYIMAFGE TPLTDVQQQQLADLLQRRKQGEPIAYLTGLREFWSLPLFVSPATLIPRPDTECLVEQA LARLPVKTCRILDLGTGTGAIALALACERPDCEVTAVDRMPDAVALAIRNAEHLAIRN VRILQSCWFSALSGQQFDMIVSNPPYIDAQDPHLSEGDVRFEPRSALVADENGMADLT HIIDNARQMLTPGGFLLLEHGWQQGEAVRAVFRRSGYSDVETCRDYGGNERVTCGRFT P" misc_feature complement(1872501..1873325) /gene="hemK" /locus_tag="STM1775" /note="N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional; Region: PRK09328" /db_xref="CDD:236467" misc_feature complement(order(1872777..1872779,1872822..1872830, 1872903..1872908,1872960..1872980)) /gene="hemK" /locus_tag="STM1775" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" regulatory complement(1872506..1872511) /regulatory_class="ribosome_binding_site" /gene="sirC" /locus_tag="STM1774" /note="putative RBS for sirC; RegulonDB:STMS1H001950" regulatory complement(1872538..1872546) /regulatory_class="minus_10_signal" /gene="sirC" /locus_tag="STM1774" /note="putative -10_signal for sirC; RegulonDB:STMLTH004509" regulatory complement(1872554..1872562) /regulatory_class="minus_35_signal" /gene="sirC" /locus_tag="STM1774" /note="putative -35_signal for sirC; RegulonDB:STMLTH004509" gene complement(1873325..1874425) /gene="prfA" /locus_tag="STM1776" /db_xref="GeneID:1253295" CDS complement(1873325..1874407) /gene="prfA" /locus_tag="STM1776" /note="peptide chain release factor 1 (RF-1). (SW:RF1_SALTY)" /codon_start=1 /transl_table=11 /product="peptide chain release factor RF-1" /protein_id="NP_460732.1" /db_xref="GeneID:1253295" /translation="MKPSIVAKLEALHERHEEVQALLGDAGIIADQDRFRALSREYAQ LSDVSRCFTDWQQVQDDIETAQMMLDDPEMREMAQEELREAKEKSEQLEQQLQVLLLP KDPDDERNAFLEVRAGTGGDEAALFAGDLFRMYSRYAEARRWRVEIMSMSEGEHGGYK EIIAKISGDGVYGRLKFESGGHRVQRVPATESQGRIHTSACTVAVMPELPEAELPDIN PADLRIDTFRSSGAGGQHVNTTDSAIRITHLPTGIVVECQDERSQHKNKAKALSVLGA RIHAAETAKRQQAEASTRRNLLGSGDRSDRNRTYNFPQGRVTDHRINLTLYRLDETME GKLDMLIEPIVQEHQADLLAALSEQE" misc_feature complement(1873337..1874398) /gene="prfA" /locus_tag="STM1776" /note="Protein chain release factor RF1 [Translation, ribosomal structure and biogenesis]; Region: PrfA; COG0216" /db_xref="CDD:439986" regulatory complement(1873328..1873333) /regulatory_class="ribosome_binding_site" /gene="hemK" /locus_tag="STM1775" /note="putative RBS for hemK; RegulonDB:STMS1H001951" regulatory complement(1874420..1874425) /regulatory_class="ribosome_binding_site" /gene="prfA" /locus_tag="STM1776" /note="putative RBS for prfA; RegulonDB:STMS1H001952" gene complement(1874448..1875724) /gene="hemA" /locus_tag="STM1777" /db_xref="GeneID:1253296" CDS complement(1874448..1875704) /gene="hemA" /locus_tag="STM1777" /EC_number="1.-.-.-" /note="glutamyl-tRNA reductase. (SW:HEM1_SALTY)" /codon_start=1 /transl_table=11 /product="glutamyl tRNA reductase" /protein_id="NP_460733.1" /db_xref="GeneID:1253296" /translation="MTLLALGINHKTAPVSLRERVTFSPDTLDQALDSLLAQPMVQGG VVLSTCNRTELYLSVEEQDNLQEALIRWLCDYHNLNEDDLRNSLYWHQDNDAVSHLMR VASGLDSLVLGEPQILGQVKKAFADSQKGHLNASALERMFQKSFSVAKRVRTETDIGA SAVSVAFAACTLARQIFESLSTVTVLLVGAGETIELVARHLREHKVQKMIIANRTRER AQALADEVGAEVISLSDIDARLQDADIIISSTASPLPIIGKGMVERALKSRRNQPMLL VDIAVPRDVEPEVGKLANAYLYSVDDLQSIISHNLAQRQAAAVEAETIVEQEASEFMA WLRAQGASETIREYRSQSEQIRDELTTKALSALQQGGDAQAILQDLAWKLTNRLIHAP TKSLQQAARDGDDERLNILRDSLGLE" misc_feature complement(1874451..1875704) /gene="hemA" /locus_tag="STM1777" /note="glutamyl-tRNA reductase; Reviewed; Region: hemA; PRK00045" /db_xref="CDD:234592" regulatory complement(1875719..1875724) /regulatory_class="ribosome_binding_site" /gene="hemA" /locus_tag="STM1777" /note="putative RBS for hemA; RegulonDB:STMS1H001953" gene 1876001..1876641 /gene="lolB" /locus_tag="STM1778" /db_xref="GeneID:1253297" regulatory 1876001..1876006 /regulatory_class="ribosome_binding_site" /gene="lolB" /locus_tag="STM1778" /note="putative RBS for lolB; RegulonDB:STMS1H001954" CDS 1876018..1876641 /gene="lolB" /locus_tag="STM1778" /note="outer-membrane lipoprotein LOLB precursor. (SW:LOLB_SALTY)" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="NP_460734.1" /db_xref="GeneID:1253297" /translation="MTLPDFRLIRLLPLASLVLTACTLPGHKGPGKSPDSPQWRQHQQ EVRHLNQYQTRGAFAYISDDQKVYARFFWQQTGQDRYRLLLTNPLGSTELELNAQPGN VQLVDNKGQRYTADDAEEMIGKLTGMPIPLNSLRQWILGLPGDATDYKLDDQYRLSEV NYRQDGKNWKVVYGGYDSKTQPAMPANMELSDGSQRIKLKMDNWIVK" misc_feature 1876030..1876635 /gene="lolB" /locus_tag="STM1778" /note="outer membrane lipoprotein LolB; Region: lolB; TIGR00548" /db_xref="CDD:129639" misc_feature order(1876177..1876179,1876183..1876185,1876189..1876191, 1876195..1876197,1876222..1876224,1876228..1876230, 1876234..1876236,1876264..1876266,1876270..1876272, 1876297..1876299,1876303..1876305,1876324..1876326, 1876330..1876332,1876495..1876497,1876528..1876530, 1876534..1876536,1876570..1876572,1876579..1876581, 1876585..1876587,1876606..1876608,1876612..1876614, 1876618..1876620,1876627..1876629) /gene="lolB" /locus_tag="STM1778" /note="hydrophobic core; other site" /db_xref="CDD:319984" misc_feature 1876282..1876284 /gene="lolB" /locus_tag="STM1778" /note="lipid binding site [chemical binding]; lipid-binding site" /db_xref="CDD:319984" gene 1876626..1877489 /gene="ipk" /locus_tag="STM1779" /db_xref="GeneID:1253298" regulatory 1876626..1876631 /regulatory_class="ribosome_binding_site" /gene="lolB" /locus_tag="STM1778" /note="putative RBS for ipk; RegulonDB:STMS1H001955" CDS 1876638..1877489 /gene="ipk" /locus_tag="STM1779" /EC_number="2.7.-.-" /note="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase. (SW:ISPE_SALTY)" /codon_start=1 /transl_table=11 /product="isopentenyl monophosphate kinase" /protein_id="NP_460735.1" /db_xref="GeneID:1253298" /translation="MMTHWPSPAKLNLFLYITGQRADGYHTLQTLFQFLDYGDTLHIE PRHDGEIHLLTPVNGVENEDNLIVRAARLLMKVASESGRLPAGSGADISIEKRLPMGG GLGGGSSNAATVLVALNHLWQCGLSIDELATLGLTLGADVPVFVRGHAAFAEGVGEIL TPVNPPEKWYLVAHPGVSIPTPVIFKDPQLPRNTPKRSIDTLLKCEFSNDCEVIARKR FREVDAALSWLLEYAPSRLTGTGACVFAEFDTESCARQVLEQAPEWLNAFVAKGVNLS PLHRELL" misc_feature 1876638..1877486 /gene="ipk" /locus_tag="STM1779" /note="4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Region: ispE; TIGR00154" /db_xref="CDD:188029" gene 1877687..1878702 /gene="prsA" /locus_tag="STM1780" /db_xref="GeneID:1253299" regulatory 1877687..1877695 /regulatory_class="minus_35_signal" /gene="prsA" /locus_tag="STM1780" /note="putative -35_signal for prsA; RegulonDB:STMLTH004510" regulatory 1877711..1877719 /regulatory_class="minus_10_signal" /gene="prsA" /locus_tag="STM1780" /note="putative -10_signal for prsA; RegulonDB:STMLTH004510" regulatory 1877743..1877748 /regulatory_class="ribosome_binding_site" /gene="prsA" /locus_tag="STM1780" /note="putative RBS for prsA; RegulonDB:STMS1H001956" CDS 1877755..1878702 /gene="prsA" /locus_tag="STM1780" /EC_number="2.7.6.1" /note="ribose-phosphate pyrophosphokinase. (SW:KPRS_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoribosylpyrophosphate synthetase" /protein_id="NP_460736.1" /db_xref="GeneID:1253299" /translation="MPDMKLFAGNATPELAQRIANRLYTSLGDAAVGRFSDGEVSVQI NENVRGGDIFIIQSTCAPTNDNLMELVVMVDALRRASAGRITAVIPYFGYARQDRRVR SARVPITAKVVADFLSSVGVDRVLTVDLHAEQIQGFFDVPVDNVFGSPILLEDMLQLN LDNPIVVSPDIGGVVRARAIAKLLNDTDMAIIDKRRPRANVSQVMHIIGDVAGRDCVL VDDMIDTGGTLCKAAEALKERGAKRVFAYATHPIFSGNAANNLRNSVIDEVVVCDTIP LTDEIKALPNVRTLTLSGMLAEAIRRISNEESISAMFEH" misc_feature 1877764..1878696 /gene="prsA" /locus_tag="STM1780" /note="ribose-phosphate diphosphokinase; Region: PRK01259" /db_xref="CDD:234929" gene 1878851..1880512 /gene="ychM" /locus_tag="STM1781" /db_xref="GeneID:1253300" CDS 1878851..1880512 /gene="ychM" /locus_tag="STM1781" /note="similar to E. coli orf, hypothetical protein (AAC74290.1); Blastp hit to AAC74290.1 (550 aa), 93% identity in aa 1 - 550" /codon_start=1 /transl_table=11 /product="putative SulP family transport protein" /protein_id="NP_460737.3" /db_xref="GeneID:1253300" /translation="MMPFRALIDACWKEKYTASRFTRDVIAGITVGIIAIPLAMALAI GSGVAPQYGLYTSAVAGIVIALTGGSRFSVSGPTAAFVVILYPVSQQFGLAGLLVATL MSGFFLILFGLARLGRLIEYIPVSVTLGFTSGIGITIGTMQIKDFLGLQMAHVPEHYL QKVGALFMALPTVNIGDAAIGVVTLGTLIFWPRLGIRLPGHLPALLAGCAVMGIVNLL GGNVATIGSQFHYVLADGTQGNGIPQLLPQLMLPWSLPGSDFTLSWDSLRALLPAAFS MAMLGAIESLLCAVVLDGMTGTKHKANSELIGQGLGNMVAPFFGGITATAAIARSAAN VRAGATSPISAVIHAILVILALLVLAPLLSWLPLSAMAALLLMVAWNMSEAHKVVDLL RHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIARMTRLAPVNVDVPDD VLVLRVIGPLFFAAAEGLFTDLESRIKGKRIVVLKWDAVPVLDAGGLDAFQRFVKRLP EGCELRISNLEFQPLRTMARAGIKPIPGRLTFFPNRTEALADLLS" misc_feature 1878851..1880509 /gene="ychM" /locus_tag="STM1781" /note="putative transporter; Provisional; Region: PRK11660" /db_xref="CDD:183265" gene complement(1880557..1880845) /gene="ychH" /locus_tag="STM1782" /db_xref="GeneID:1253301" CDS complement(1880557..1880835) /gene="ychH" /locus_tag="STM1782" /note="similar to E. coli orf, hypothetical protein (AAC74289.1); Blastp hit to AAC74289.1 (92 aa), 91% identity in aa 1 - 92" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460738.1" /db_xref="GeneID:1253301" /translation="MKRKNASLFGNVLMGLGLVVMVVGVGYSILNQLPQFNLPQFFAH GAILSIFVGAVLWLAGARVGGHEQVSDKYWWVRHYDKRCRRNDNRRHS" misc_feature complement(1880560..1880835) /gene="ychH" /locus_tag="STM1782" /note="stress response protein YchH; Region: PRK10692" /db_xref="CDD:182651" regulatory complement(1880840..1880845) /regulatory_class="ribosome_binding_site" /gene="ychH" /locus_tag="STM1782" /note="putative RBS for ychH; RegulonDB:STMS1H001957" gene 1881087..1881695 /gene="pth" /locus_tag="STM1783" /db_xref="GeneID:1253302" CDS 1881087..1881695 /gene="pth" /locus_tag="STM1783" /EC_number="3.1.1.29" /note="similar to E. coli peptidyl-tRNA hydrolase (AAC74288.1); Blastp hit to AAC74288.1 (194 aa), 91% identity in aa 1 - 194" /codon_start=1 /transl_table=11 /product="peptidyl-tRNA hydrolase" /protein_id="NP_460739.3" /db_xref="GeneID:1253302" /translation="MDLLRTKNVAIKLIVGLANPGAEYAATRHNAGAWYVDLLAERLR APLREEPKFFGYTSRITLEGEDVRLLVPTTFMNLSGKAVGAMASFYRIQPDEILVAHD ELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRVGIGHPGDKNKVVGFVLG KPPVSEQKLIDEAIDEAARCTELWFKEGLAKATSRLHTFKAQ" misc_feature 1881117..1881680 /gene="pth" /locus_tag="STM1783" /note="Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]; Region: Pth; COG0193" /db_xref="CDD:439963" gene 1881797..1882903 /gene="ychF" /locus_tag="STM1784" /db_xref="GeneID:1253303" regulatory 1881797..1881802 /regulatory_class="ribosome_binding_site" /gene="ychF" /locus_tag="STM1784" /note="putative RBS for ychF; RegulonDB:STMS1H001958" CDS 1881812..1882903 /gene="ychF" /locus_tag="STM1784" /note="similar to E. coli putative GTP-binding protein (AAC74287.1); Blastp hit to AAC74287.1 (363 aa), 95% identity in aa 1 - 363" /codon_start=1 /transl_table=11 /product="putative GTP-binding protein" /protein_id="NP_460740.1" /db_xref="GeneID:1253303" /translation="MGFKCGIVGLPNVGKSTLFNALTKAGIEAANFPFCTIEPNTGVV PMPDPRLDQLAEIVKPQRILPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGH VVRCFENDNIIHVAGKVNPAEDIDVINTELALADLDTCERAIHRVQKKAKGGDKDAKA ELAALEKCLPHLAEAGMLRSLDLTDEDKAAIRYLSFLTLKPTMYIANVNEDGFENNPY LDQVREIAAKEGSVVVPVCAAVEADIAELDDDERDEFMAELGLEEPGLNRVIRAGYRL LNLQTYFTAGVKEVRAWTIPVGATAPQAAGKIHTDFEKGFIRAQTIAFDDFITYKGEQ GAKEAGKMRAEGKDYIVKDGDIMNFLFNV" misc_feature 1881818..1882900 /gene="ychF" /locus_tag="STM1784" /note="Ribosome-binding ATPase YchF, GTP1/OBG family [Translation, ribosomal structure and biogenesis]; Region: GTP1; COG0012" /db_xref="CDD:439783" gene complement(1883062..1884332) /locus_tag="STM1785" /db_xref="GeneID:1253304" CDS complement(1883062..1884327) /locus_tag="STM1785" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460741.1" /db_xref="GeneID:1253304" /translation="MKNNIRFDLSDYLIHFFRDVNLETGSHIYLPEHCGFNNQHHACF IDAKYLLRLSLRSHKIFSSWSYRNGQRTVYGDSPVVCFTDMPIAAYLETGVRRLERNE KIGLYAIVLPKEQMFNYGARPVIYGLDQHNNARCSQGRNGERILDETALPLIEQYRYV TYVPGKIDWTHEREWRWPYRGDINNFLNHIKEYGIPENIESTPGFDFRSSEISGAGII VPFAEDIPTVAHDILTLIDRGVIGRNTFKFIIAVESLQSWTQLSEPGALLSCINDNTF EFESFFDLSASKVKNYADSINDYVSELYSKKDFLNDSYAMEFGNAWVWIHDNQSQVVR ALLQAGMIKVNKEGRYLLDVNLASVDWPLRRKEAFASHVAGWLKHRFDIEAGRYSVRG KDDYDAIPSYETPLKDQHPFYNHTVNVDW" misc_feature complement(1883083..1883478) /locus_tag="STM1785" /note="Protein of unknown function (DUF4427); Region: DUF4427; pfam14468" /db_xref="CDD:291157" regulatory complement(1884327..1884332) /regulatory_class="ribosome_binding_site" /locus_tag="STM1785" /note="putative RBS for STM1785; RegulonDB:STMS1H001959" gene 1884759..1885940 /locus_tag="STM1786" /db_xref="GeneID:1253305" regulatory 1884759..1884767 /regulatory_class="minus_35_signal" /locus_tag="STM1786" /note="putative -35_signal for STM1786; RegulonDB:STMLTH004511" regulatory 1884786..1884794 /regulatory_class="minus_10_signal" /locus_tag="STM1786" /note="putative -10_signal for STM1786; RegulonDB:STMLTH004511" regulatory 1884802..1884807 /regulatory_class="ribosome_binding_site" /locus_tag="STM1786" /note="putative RBS for STM1786; RegulonDB:STMS1H001960" CDS 1884822..1885940 /locus_tag="STM1786" /EC_number="1.12.7.2" /note="similar to E. coli hydrogenase-1 small subunit (AAC74057.1); Blastp hit to AAC74057.1 (372 aa), 92% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="hydrogenase-1 small subunit" /protein_id="NP_460742.1" /db_xref="GeneID:1253305" /translation="MNNEETFYQAMRRKGVTRRSFLKFCSLAATSLGLGAGMTPKIAW ALENKPRIPVVWIHGLECTCCTESFIRSSHPLAKDVILSLISLDYDDTLMAAAGAQAE EVFDDITTRYAGKYILAVEGNPPLGEQGMFCISGGRPFIEKLKKAAAGASAIIAWGNC ASWGCVQAARPNPTQATPIDKVITDKPIVKVPGCPPIPDVMSAIITYMVTFDRLPELD RMGRPLMFYGQRIHDKCYRRAHFDAGEFVESWDDDAARKGYCLYKMGCKGPTTYNACS STRWNDGVSFPIQSGHGCLGCSENGFWDRGSFYSRVVDIPQMGTHSTADTVGLTALGV VAAGVGGHAVASALNQRKRHKQQLAQAEQQPDNEDKQA" misc_feature 1884825..1885892 /locus_tag="STM1786" /note="hydrogenase (NiFe) small subunit (hydA); Region: hydA; TIGR00391" /db_xref="CDD:273053" gene 1885923..1887730 /locus_tag="STM1787" /db_xref="GeneID:1253306" regulatory 1885923..1885928 /regulatory_class="ribosome_binding_site" /locus_tag="STM1786" /note="putative RBS for STM1787; RegulonDB:STMS1H001961" CDS 1885937..1887730 /locus_tag="STM1787" /EC_number="1.12.7.2" /note="similar to E. coli hydrogenase-1 large subunit (AAC74058.1); Blastp hit to AAC74058.1 (597 aa), 91% identity in aa 1 - 597" /codon_start=1 /transl_table=11 /product="hydrogenase-1 large subunit" /protein_id="NP_460743.1" /db_xref="GeneID:1253306" /translation="MSNQYQTQGYTVNDAGRRLIVDPITRIEGHMRCEVNIDEQNVIT NAVSCGTMFRGLEIILQGRDPRDAWAFVERICGVCTGVHALASVYAIEDAIGIQVPDN ANIIRNIMLATLWCHDHLVHFYQLAGMDWIDVLNALKADPRATSQLAQSLSAWPMSSP GYFFDVQNRLKKFVDGGQLGIFRNGYWGHPQYKLSPEANLMGFAHYLEALDFQREIVK IHTIFGGKNPHPNWIVGGMPCAINLDQSGAVGAINMERLNLVQSIITRTADFINNVMV PDALAIGQFNKAWSQIGTGLSDKCVLSYGAFPDIANDFSQQSLLMPGGAVINGDFKNV MPVDLADPQQIQEFVDHAWYRYPDDRLGRHPFDGITDPWYNPGDVKGSDTHIQQLNEQ ERYSWIKAPRWRGHAMEVGPLARTLIAYHKGDAATIESVDRMMSALKLPLSGIQSTLG RILCRAHEAQWAVGKLQYFFDRLMTNLKNGDLATANTEKWEPASWPQHCRGIGFTEAP RGALGHWASIRDQKIELYQCVVPTTWNASPRDPKKQIGAYEAALMGTQMAIPDQPLEI LRTLHSFDPCLACSTHVLGDDGSELIAVQVR" misc_feature 1885937..1887727 /locus_tag="STM1787" /note="Ni/Fe-hydrogenase large subunit; Region: PRK10170" /db_xref="CDD:182281" gene 1887736..1888480 /locus_tag="STM1788" /db_xref="GeneID:1253307" regulatory 1887736..1887741 /regulatory_class="ribosome_binding_site" /locus_tag="STM1788" /note="putative RBS for STM1788; RegulonDB:STMS1H001962" CDS 1887749..1888480 /locus_tag="STM1788" /note="similar to E. coli probable Ni/Fe-hydrogenase 1 b-type cytochrome subunit (AAC74059.1); Blastp hit to AAC74059.1 (235 aa), 83% identity in aa 6 - 235" /codon_start=1 /transl_table=11 /product="putative Ni/Fe-hydrogenase 1 b-type cytochrome subunit" /protein_id="NP_460744.1" /db_xref="GeneID:1253307" /translation="MTGKLSPRVGEARDTAVSHYVFEAPVRLWHWLTVACMLVLMVTG YFIGRPLPSVSGEATYLFYMGYIRLIHFAAAMIFTVLLLGRIYWACVGNRYSRELFIV PVWRRSWWQGAFTVVRWYLFLEKKPGSDIGHNPVAQAAMFGYFLLSVFMILTGFALFG EHSQYAIFAPFRYVVEFFYWTGGNSIDIHSWHRLGMWLIAAFIVGHVYLAIREDIMSD DTVISTMINGYRSHKFPKPHDKEPS" misc_feature 1887773..1888477 /locus_tag="STM1788" /note="Ni/Fe-hydrogenase b-type cytochrome subunit; Region: PRK10171" /db_xref="CDD:182282" gene 1888466..1889073 /locus_tag="STM1789" /db_xref="GeneID:1253308" regulatory 1888466..1888471 /regulatory_class="ribosome_binding_site" /locus_tag="STM1789" /note="putative RBS for STM1789; RegulonDB:STMS1H001963" CDS 1888477..1889073 /locus_tag="STM1789" /note="similar to E. coli processing of HyaA and HyaB proteins (AAC74060.1); Blastp hit to AAC74060.1 (195 aa), 88% identity in aa 1 - 192" /codon_start=1 /transl_table=11 /product="putative hydrogenase maturation protease" /protein_id="NP_460745.1" /db_xref="GeneID:1253308" /translation="MNAQRVVVMGLGNLLWADEGFGIRVAERLYARYHWPEEVEIVDG GTQGLNLLGYVEQASHLLLLDAIDYGLAPGSLRTYAGEKIPAYLSAKKMSLHQNSFSE VLALADIRGHLPCHIALVGLQPALLDDYGGSLSEIARSQLPAAEQAALAQLAAWGIVP QANEVARCLNYKCLSMENYEGVRIRQYQTRLEGKRSGE" misc_feature 1888477..1889061 /locus_tag="STM1789" /note="hydrogenase 1 maturation protease; Provisional; Region: PRK10264" /db_xref="CDD:182345" misc_feature order(1888513..1888515,1888555..1888557,1888603..1888611) /locus_tag="STM1789" /note="putative substrate-binding site [active]" /db_xref="CDD:99873" misc_feature order(1888531..1888533,1888669..1888671,1888762..1888764) /locus_tag="STM1789" /note="nickel binding site [ion binding]; other site" /db_xref="CDD:99873" gene 1889047..1889467 /locus_tag="STM1790" /db_xref="GeneID:1253309" regulatory 1889047..1889052 /regulatory_class="ribosome_binding_site" /locus_tag="STM1790" /note="putative RBS for STM1790; RegulonDB:STMS1H001964" CDS 1889063..1889467 /locus_tag="STM1790" /note="similar to E. coli processing of HyaA and HyaB proteins (AAC74061.1); Blastp hit to AAC74061.1 (132 aa), 72% identity in aa 1 - 125" /codon_start=1 /transl_table=11 /product="putative thiol-disulfide isomerase and thioredoxin" /protein_id="NP_460746.1" /db_xref="GeneID:1253309" /translation="MANDTPFSALWQRLLTRGWQPVEASTVDDWIKRVGDGVILLSSD PRRTPEVSDNPVMIAELLREFPQFDWQVAVADLEQSEAIGDRFNVRRFPATLVFTDGK LRGALSGIHPWAELLTLMRSIVDTPAAQETVQ" misc_feature 1889063..1889458 /locus_tag="STM1790" /note="hydrogenase-1 operon protein HyaE; Provisional; Region: PRK11509" /db_xref="CDD:183168" gene 1889450..1890312 /locus_tag="STM1791" /db_xref="GeneID:1253310" regulatory 1889450..1889455 /regulatory_class="ribosome_binding_site" /locus_tag="STM1790" /note="putative RBS for STM1791; RegulonDB:STMS1H001965" CDS 1889464..1890312 /locus_tag="STM1791" /note="similar to E. coli nickel incorporation into hydrogenase-1 proteins (AAC74062.1); Blastp hit to AAC74062.1 (285 aa), 75% identity in aa 1 - 279" /codon_start=1 /transl_table=11 /product="putative hydrogenase-1 protein" /protein_id="NP_460747.1" /db_xref="GeneID:1253310" /translation="MSNAFFHLLGPGTQPDDASFSMNPLPLTCQVNGDPSMAALERCA HSPAVMALLTDLRGQLARRIPEVGDVLGWELSPLNADDLSFLNTLLGEGEVSVRIQHP DGSESEIQETIFCGLWRVRHLHNRRLLTDRLEAGSAPLTLWQAATADTLPDDSLLPPP VAGLMNGLPLAHELLAHVRDPALQPHSINLTQLPLSEADRLFLARLCGHGNIQIRISG YGESQINATALRHLWHVRCLDALKGPLLDSYEICPLPELVLAAPEDLADSRQRLDEVC RWLETR" misc_feature 1889959..1890279 /locus_tag="STM1791" /note="HupH hydrogenase expression protein, C-terminal conserved region; Region: HupH_C; pfam04809" /db_xref="CDD:428133" gene 1890376..1891931 /locus_tag="STM1792" /db_xref="GeneID:1253311" regulatory 1890376..1890381 /regulatory_class="ribosome_binding_site" /locus_tag="STM1792" /note="putative RBS for STM1792; RegulonDB:STMS1H001966" CDS 1890387..1891931 /locus_tag="STM1792" /EC_number="1.10.3.-" /note="similar to E. coli probable third cytochrome oxidase, subunit I (AAC74063.1); Blastp hit to AAC74063.1 (514 aa), 88% identity in aa 1 - 514" /codon_start=1 /transl_table=11 /product="putative cytochrome oxidase, subunit I" /protein_id="NP_460748.1" /db_xref="GeneID:1253311" /translation="MWDVIDLSRWQFALTALYHFLFVPLTLGLIFLLAVMETIYVVTG KTVYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSLYSNYVGDIFGAPLAMEALL AFFLESTFVGLFFFGWQRLNKYQHLLVTWLVAFGSNISALWILNANGWMQYPTGAHFN IDTLRMEMSSFSDLVFNPVSQVKFVHTVMSGYVTGAMFIMSISAWYLLRGREREVALR SFAIGSVFGTLAILGTLQLGDSSAYEVAQIQPVKLAAMEGEWQTEPAPAPFHLIAWPQ QEQERNAFAVKIPALLGILATHSLDTPVPGLKNLMDDALPRLKRGREAWLLMKEIAQG NRSPQVLNAFHAVEGDLGYGILLAKYAPDMNHVTPEQYRAAQRGAIPQVAPVFWSFRI MVGCGSLLLVVMLIALIQTLRMRIDQHRWVLRMTLWSLPLPWIAIEAGWFMTEFGRQP WAIQDILPTWYAHSALTPGQLAFSMGLILGLYTLFLIAEVYLMQKYARLGPSAMQHQQ QAQQQG" misc_feature 1890387..1891898 /locus_tag="STM1792" /note="cytochrome bd-II oxidase subunit 1; Provisional; Region: PRK15035" /db_xref="CDD:184995" gene 1891931..1893079 /locus_tag="STM1793" /db_xref="GeneID:1253312" regulatory 1891931..1891936 /regulatory_class="ribosome_binding_site" /locus_tag="STM1793" /note="putative RBS for STM1793; RegulonDB:STMS1H001967" CDS 1891943..1893079 /locus_tag="STM1793" /EC_number="1.10.3.-" /note="similar to E. coli probable third cytochrome oxidase, subunit II (AAC74064.1); Blastp hit to AAC74064.1 (378 aa), 80% identity in aa 1 - 378" /codon_start=1 /transl_table=11 /product="putative cytochrome oxidase, subunit II" /protein_id="NP_460749.1" /db_xref="GeneID:1253312" /translation="MLDYETLRFIWWLLIGVILVAFMVTDGFDMGVGCLLPLIARNDD ERRVLINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCALFFRPL AFDYRGKIANARWRALWDTGLVIGSLVPPVVFGIAFGNLFLGVPFAFTPQLHVDYFGT FWQLLSPFALLCGLLSLSLVIMQGGVWLQLKTEGVIRQRALSATRYSALLIVICFLLA GYWLWAGVDGFVLLTQDANGPSNPLLKGVAILPGAWMNHFIRSPLLLIIPLLGMILPI LAFYACLRGQTIRGFLFASLTQACVIFTAGITLFPFVMPSSVSPLSSLTVWDSTSSQM TLEIMLVIVLIFLPIVLLYTLWSYYKMLGRINLGTLRRNDHELY" misc_feature 1891943..1893076 /locus_tag="STM1793" /note="cytochrome d ubiquinol oxidase subunit II; Region: PRK15028" /db_xref="CDD:184988" gene 1893087..1893181 /locus_tag="STM1794" /db_xref="GeneID:1253313" regulatory 1893087..1893092 /regulatory_class="ribosome_binding_site" /locus_tag="STM1794" /note="putative RBS for STM1794; RegulonDB:STMS1H001968" CDS 1893092..1893181 /locus_tag="STM1794" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460750.1" /db_xref="GeneID:1253313" /translation="MWYLLWFVGILLMCSLSTLALVWLESRQQ" misc_feature 1893092..>1893178 /locus_tag="STM1794" /note="Membrane bound YbgT-like protein; Region: YbgT_YccB; cl02039" /db_xref="CDD:470443" gene 1893520..1894850 /locus_tag="STM1795" /db_xref="GeneID:1253314" regulatory 1893520..1893525 /regulatory_class="ribosome_binding_site" /locus_tag="STM1795" /note="putative RBS for STM1795; RegulonDB:STMS1H001969" CDS 1893525..1894850 /locus_tag="STM1795" /EC_number="1.4.1.3" /note="similar to E. coli NADP-specific glutamate dehydrogenase (AAC74831.1); Blastp hit to AAC74831.1 (447 aa), 32% identity in aa 33 - 408" /codon_start=1 /transl_table=11 /product="putative homolog of glutamic dehydrogenase" /protein_id="NP_460751.1" /db_xref="GeneID:1253314" /translation="MYHGQLKNILLLSLRFIMDKLSYASDSSTSAWNTYLQQIERVAP YLGELSPWVDTLRHPKRALIVDIPVQMDDGTIRHFEGYRVQHNLSRGPGKGGVRYHPD VDLNEVMALSAWMTIKCAALNLPYGGAKGGIRVDPFSLSEGELERLTRRYTSEIGIII GPQKDIPAPDVGTNGKVMAWMMDTYSMNHGTTVTGVVTGKPIHLGGSLGREKATGRGV FVSGLEAARRANIAVEGARVAVQGFGNVGSEAARLFAGAGARVVAIQDHTATLFNATG IDMKALTAWQTEHKQIAGFPGAETIASDAFWRLEMDILIPAALEGQITRQRAEALTCK LVLEGANGPTYPDADDVLASRGILVVPDVVCNAGGVTVSYFEWVQDMASFFWSEEEIN ARMDKIMTDAIVHVWEKAAEKSCSLRTAAYIVACERILLARKDRGIYPG" misc_feature 1893606..1894838 /locus_tag="STM1795" /note="Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]; Region: GdhA; COG0334" /db_xref="CDD:440103" gene 1894974..1896776 /gene="treA" /locus_tag="STM1796" /db_xref="GeneID:1253315" regulatory 1894974..1894982 /regulatory_class="minus_35_signal" /gene="treA" /locus_tag="STM1796" /note="putative -35_signal for treA; RegulonDB:STMLTH004512" regulatory 1894999..1895007 /regulatory_class="minus_10_signal" /gene="treA" /locus_tag="STM1796" /note="putative -10_signal for treA; RegulonDB:STMLTH004512" regulatory 1895050..1895055 /regulatory_class="ribosome_binding_site" /gene="treA" /locus_tag="STM1796" /note="putative RBS for treA; RegulonDB:STMS1H001970" CDS 1895064..1896776 /gene="treA" /locus_tag="STM1796" /EC_number="3.2.1.28" /note="similar to E. coli trehalase, periplasmic (AAC74281.1); Blastp hit to AAC74281.1 (565 aa), 82% identity in aa 11 - 553" /codon_start=1 /transl_table=11 /product="trehalase, periplasmic" /protein_id="NP_460752.1" /db_xref="GeneID:1253315" /translation="MIPPEIRRSVLLQKAIKLALAGTLLTFASFSATAADPSSDTETP QPPDILLGPLFNDVQNAKLFPDQKTFADAIPNSDPLMILADYRMQRNQSGFDLRHFVD VNFTLPKAGEKYVPPAGQSLREHIDGLWPVLTRSTKNVEKWDSLLPLPESYVVPGGRF REIYYWDSYFTMLGLAESGHWDKVADMVANFGYEIDAWGHIPNGNRTYYLSRSQPPFF AFMVELLAQHEGDDALKEYLPQLQKEYAYWMEGVETLQPGQQNQRVVKLEDGSVLNRY WDDRDTPRPESWVEDIATAKSNPNRPATEIYRDLRSAAASGWDFSSRWMDNPQQLSTI RTTTIAPVDLNALLYQLEKTLARASAAAGDRAKASHYDALANARQKAIEMHLWNNKEG WYADYDLKNNKIRDQLTAAALFPLYVNAAAKDRAAKVAAAAQAHLLQPGGLATTSVKS GQQWDAPNGWAPLQWVAAEGLQNYGQDDVAMEVTWRFLTNVQHTYDREKKLVEKNDVS STGTGGGGGEYPLQDGFGWTNGVTLKMLDLICPQEKPCDSVPSTRPASLSATPTKTPS AATQ" misc_feature 1895064..1896773 /gene="treA" /locus_tag="STM1796" /note="alpha,alpha-trehalase TreA; Region: treA; PRK13271" /db_xref="CDD:237326" gene complement(1896839..1897112) /gene="ymgE" /locus_tag="STM1797" /db_xref="GeneID:1253316" CDS complement(1896839..1897093) /gene="ymgE" /locus_tag="STM1797" /note="similar to E. coli orf, hypothetical protein (AAC74279.1); Blastp hit to AAC74279.1 (84 aa), 91% identity in aa 1 - 83" /codon_start=1 /transl_table=11 /product="putative transglycosylase-associated protein" /protein_id="NP_460753.1" /db_xref="GeneID:1253316" /translation="MGIIAWIVFGLIAGVIAKLLMPGRDGGGFILTCILGIVGAVVGG WLATMFGIGGSISGFNLHSFLVAVVGAIVVLVIFRLLRRG" misc_feature complement(1896842..1897093) /gene="ymgE" /locus_tag="STM1797" /note="Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family [General function prediction only]; Region: YeaQ; COG2261" /db_xref="CDD:441862" regulatory complement(1897107..1897112) /regulatory_class="ribosome_binding_site" /gene="ymgE" /locus_tag="STM1797" /note="putative RBS for ymgE; RegulonDB:STMS1H001971" gene 1897247..1897996 /gene="ycgR" /locus_tag="STM1798" /db_xref="GeneID:1253317" regulatory 1897247..1897252 /regulatory_class="ribosome_binding_site" /gene="ycgR" /locus_tag="STM1798" /note="putative RBS for ycgR; RegulonDB:STMS1H001972" CDS 1897262..1897996 /gene="ycgR" /locus_tag="STM1798" /note="similar to E. coli orf, hypothetical protein (AAC74278.1); Blastp hit to AAC74278.1 (244 aa), 72% identity in aa 1 - 244" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460754.1" /db_xref="GeneID:1253317" /translation="MSGYNEQFLKKNPLAILGVLRDLNKNQVPLRISWAHGQFISKIL AVDPEKLIVDYGSQEYENSAVLRAGQVAIIAETQGAKVEFTLPQLVTGEYQRLPAFIT PLPSSLWFVQRREYFRIGAPLYPPYYGVTTLPDTRTLRFRLFDLSLGGMGALLESAIP DGLIEGARFSQVELNMGQWGIFHVDAQLISISERKVIDGKNETITTPRLSFRFLNVSP AVERELQRIIFSLEREARERANKVRE" misc_feature 1897349..1897978 /gene="ycgR" /locus_tag="STM1798" /note="Cyclic di-GMP-binding flagellar brake protein FlgZ/YcgR, contains PilZNR(YcgR) and PilZ domains [Cell motility]; Region: YcgR; COG5581" /db_xref="CDD:444320" gene complement(1898010..1898634) /gene="emtA" /locus_tag="STM1799" /db_xref="GeneID:1253318" CDS complement(1898010..1898621) /gene="emtA" /locus_tag="STM1799" /EC_number="3.2.1.-" /note="similar to E. coli murein transglycosylase E (AAC74277.1); Blastp hit to AAC74277.1 (241 aa), 90% identity in aa 39 - 241" /codon_start=1 /transl_table=11 /product="membrane-bound lytic murein transglycosylase E" /protein_id="NP_460755.1" /db_xref="GeneID:1253318" /translation="MKLRWFAFLVVILAGCSSKQDYRNPPWNAEVPVKRAMQWMPISE KAGAAWGVDPHLITAIIAIESGGNPNAVSKSNAIGLMQLKASTSGRDVYRRMGWRGEP TTSELKNPERNISMGAAYLSILENGPLAGIKDPQVMQYALVVSYANGAGALLRTFSSD RKKAIEKINDLDADEFFEHVVDNHPAPQAPRYIWKLQQALDAM" misc_feature complement(1898013..1898621) /gene="emtA" /locus_tag="STM1799" /note="membrane-bound lytic murein transglycosylase EmtA; Region: emtA; PRK15470" /db_xref="CDD:185367" regulatory complement(1898629..1898634) /regulatory_class="ribosome_binding_site" /gene="emtA" /locus_tag="STM1799" /note="putative RBS for emtA; RegulonDB:STMS1H001973" gene 1898781..1899706 /gene="ycgQ" /locus_tag="STM1800" /db_xref="GeneID:1253319" regulatory 1898781..1898786 /regulatory_class="ribosome_binding_site" /gene="ycgQ" /locus_tag="STM1800" /note="putative RBS for ycgQ; RegulonDB:STMS1H001974" CDS 1898792..1899706 /gene="ycgQ" /locus_tag="STM1800" /note="homologs of microcin C7; similar to E. coli orf, hypothetical protein (AAC74276.1); Blastp hit to AAC74276.1 (304 aa), 79% identity in aa 1 - 304" /codon_start=1 /transl_table=11 /product="putative resistance protein MccF" /protein_id="NP_460756.1" /db_xref="GeneID:1253319" /translation="MSLFHLIAPSGYCINQQAALRGVQRLTDAGHQVENDEVIRRRFQ RFAGTDAERLADVNSLASLTSPDTIVMPVRGGYGASRLLDRIDWQALASRQQRDPLLI CGHSDFTAIQAGLLAQANVITFSGPMLAANFGAETLNTFTEQHFWLALRKAQFTVEWQ GDGPQCDAQGTLWGGNLAMLISLIGTPWMPTIDKGILVLEDVNEHPFRVERMLLQLEY AGILNRQSAIVLGSFSGAAPNEYDAGYSLESVYAFLRSRLSVPLITGLDFGHEQRTVT LPIGANAMLKNTRQGTQLTLSGHPTLQL" misc_feature 1898792..1899700 /gene="ycgQ" /locus_tag="STM1800" /note="L,D-carboxypeptidase A; Provisional; Region: ldcA; PRK11253" /db_xref="CDD:183059" misc_feature order(1899029..1899034,1899332..1899337,1899341..1899346, 1899410..1899415,1899419..1899424,1899431..1899436, 1899548..1899553) /gene="ycgQ" /locus_tag="STM1800" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:132882" misc_feature order(1899107..1899109,1899389..1899391,1899599..1899601) /gene="ycgQ" /locus_tag="STM1800" /note="catalytic triad [active]" /db_xref="CDD:132882" gene 1899787..1901536 /gene="ycgO" /locus_tag="STM1801" /db_xref="GeneID:1253320" regulatory 1899787..1899792 /regulatory_class="ribosome_binding_site" /gene="ycgO" /locus_tag="STM1801" /note="putative RBS for ycgO; RegulonDB:STMS1H001975" CDS 1899803..1901536 /gene="ycgO" /locus_tag="STM1801" /note="similar to E. coli orf, hypothetical protein (AAC74275.1); Blastp hit to AAC74275.1 (536 aa), 92% identity in aa 1 - 535" /codon_start=1 /transl_table=11 /product="putative CPA1 family Na:H transport protein" /protein_id="NP_460757.1" /db_xref="GeneID:1253320" /translation="MDAATIISLFILGSILVTSSILLSSFSSRLGIPILVIFLAIGML AGVDGIGGIPFDNYPFAYMVSNLALAIILLDGGMRTQASSFRVALGPALSLATLGVLI TSGLTGMMAAWLFHLDLIEGLLIGAIVGSTDAAAVFSLLGGKGLNERVGSTLEIESGS NDPMAVFLTITLIEMIQKHETGLDWMFAVHIIQQFGLGIVFGLGGGYLLQQMINRISL PSGLYPMLALSGGILIFALTTALEGSGILAVYLCGFLLGNRPIRNRYGILQNFDGLAW LAQIAMFLVLGLLVTPSDLWPIAVPALILSIWMIFFARPLSVFTGLLPFRGFNLRERI FISWVGLRGAVPIILAVFPMMAGLENARLFFNVAFFVVLVSLLLQGTSLSWAAKRAKV VVPPVGWPVSRVGLDIHPDNPWEQFIYQLSADKWCVGAALRDLHMPNETRIAALFRNN ELFHPTGSTRLQEGDVLCVIGRERDLPALGKLFSQSPPVSLDQRFFGDFILEANAKFA DVALIYGLEEGTEYRDKQQTLGEIIQQLLGAAPVVGDQVEFGGMIWTVAEKEDNVVRK IGVRVAEDEAE" misc_feature 1899815..1901515 /gene="ycgO" /locus_tag="STM1801" /note="potassium/proton antiporter; Region: PRK05326" /db_xref="CDD:235410" gene complement(1901599..1902680) /gene="dadX" /locus_tag="STM1802" /db_xref="GeneID:1253321" CDS complement(1901599..1902669) /gene="dadX" /locus_tag="STM1802" /EC_number="5.1.1.1" /note="catabolic; alanine racemase, catabolic. (SW:ALR2_SALTY)" /codon_start=1 /transl_table=11 /product="alanine racemase 2" /protein_id="NP_460758.1" /db_xref="GeneID:1253321" /translation="MTRPIQASLDLQVMKQNLAIVRRAAPEARVWSVVKANAYGHGIE RVWSALGATDGFAMLNLEEAITLRERGWKGPILMLEGFFHAQDLEAYDTYRLTTCIHS NWQLKALQNARLNAPLDIYVKVNSGMNRLGFQPERAQTVWQQLRAMRNVGEMTLMSHF AQADHPEGIGEAMRRIALATEGLQCAYSLSNSAATLWHPQAHYDWVRPGIILYGASPS GQWRDIADTGLKPVMTLSSEIIGVQTLSAGERVGYGGGYSVTQEQRIGIVAAGYADGY PRHAPTGTPVLVDGIRTRTVGTVSMDMLAVDLTPCPQAGIGTPVELWGKEIKVDDVAS AAGTLGYELLCAVAPRVPFVTT" misc_feature complement(1901605..1902666) /gene="dadX" /locus_tag="STM1802" /note="catabolic alanine racemase; Region: dadX; PRK03646" /db_xref="CDD:179622" misc_feature complement(order(1901647..1901649,1902040..1902051, 1902091..1902099,1902193..1902195,1902199..1902201, 1902280..1902282,1902301..1902303,1902433..1902435, 1902553..1902555,1902565..1902567,1902571..1902573)) /gene="dadX" /locus_tag="STM1802" /note="active site" /db_xref="CDD:143500" misc_feature complement(order(1901647..1901649,1902040..1902045, 1902049..1902051,1902094..1902099,1902193..1902195, 1902433..1902435,1902553..1902555,1902565..1902567, 1902571..1902573)) /gene="dadX" /locus_tag="STM1802" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature complement(order(1901647..1901649,1902193..1902195, 1902280..1902282,1902553..1902555,1902565..1902567)) /gene="dadX" /locus_tag="STM1802" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature complement(order(1901911..1901913,1902565..1902567)) /gene="dadX" /locus_tag="STM1802" /note="catalytic residues [active]" /db_xref="CDD:143500" misc_feature complement(order(1901620..1901622,1901629..1901631, 1901644..1901649,1901653..1901655,1901764..1901766, 1901770..1901772,1901836..1901838,1901854..1901856, 1901869..1901871,1901908..1901916,1901920..1901925, 1901941..1901943,1901950..1901952)) /gene="dadX" /locus_tag="STM1802" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143500" regulatory complement(1902675..1902680) /regulatory_class="ribosome_binding_site" /gene="dadX" /locus_tag="STM1802" /note="putative RBS for dadX; RegulonDB:STMS1H001976" gene complement(1902683..1904086) /gene="dadA" /locus_tag="STM1803" /db_xref="GeneID:1253322" CDS complement(1902683..1903981) /gene="dadA" /locus_tag="STM1803" /EC_number="1.4.99.6" /note="similar to E. coli D-amino acid dehydrogenase subunit (AAC74273.1); Blastp hit to AAC74273.1 (432 aa), 90% identity in aa 1 - 432" /codon_start=1 /transl_table=11 /product="D-amino acid dehydrogenase subunit" /protein_id="NP_460759.1" /db_xref="GeneID:1253322" /translation="MRVVILGSGVVGVTSAWYLSQAGHDVTVIDRESGPAQETSAANA GQISPGYAAPWAAPGVPLKAIKWMFQRHAPLAVRLDGTPFQLKWMWQMLRNCDTRHYM ENKGRMVRLAEYSRDCLKTLRAATGIEYEGRQGGTLQLFRTAQQYENATRDIAVLEDA GVPYQLLESSRLAEVEPALAEVAHKLTGGLRLPNDETGDCQLFTQRLARMAEQAGVTF RFNTPVEKLLYENDQIYGVKCADEIIKADAYVMAFGSYSTAMLKGIVDIPVYPLKGYS LTIPIVEPDGAPVSTILDETYKIAITRFDKRIRVGGMAEIVGFNTDLLQPRRETLEMV VRDLFPRGGHIEQATFWTGLRPMTPDGTPVVGRTRYKNLWLNTGHGTLGWTMACGSGQ LLSDILSGRTPAIPYDDLSVARYRSDFTPTPPQRLHSAHN" misc_feature complement(1902737..1903981) /gene="dadA" /locus_tag="STM1803" /note="D-amino acid dehydrogenase; Region: PRK00711" /db_xref="CDD:234819" regulatory complement(1903987..1903992) /regulatory_class="ribosome_binding_site" /gene="dadA" /locus_tag="STM1803" /note="putative RBS for dadA; RegulonDB:STMS1H001977" regulatory complement(1904059..1904067) /regulatory_class="minus_10_signal" /gene="dadA" /locus_tag="STM1803" /note="putative -10_signal for dadA; RegulonDB:STMLTH004513" protein_bind complement(1904070..1904099) /note="putative binding site for CRP, RegulonDB: STMS1H000060" /bound_moiety="CRP" regulatory complement(1904078..1904086) /regulatory_class="minus_35_signal" /gene="dadA" /locus_tag="STM1803" /note="putative -35_signal for dadA; RegulonDB:STMLTH004513" gene 1904292..1905836 /gene="ycgB" /locus_tag="STM1804" /db_xref="GeneID:1253323" regulatory 1904292..1904297 /regulatory_class="ribosome_binding_site" /gene="ycgB" /locus_tag="STM1804" /note="putative RBS for ycgB; RegulonDB:STMS1H001978" CDS 1904304..1905836 /gene="ycgB" /locus_tag="STM1804" /note="similar to E. coli putative sporulation protein (AAC74272.1); Blastp hit to AAC74272.1 (510 aa), 96% identity in aa 1 - 510" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460760.3" /db_xref="GeneID:1253323" /translation="MAMIDSMNKDTTRLSDGPDWTFELLDVYLAEIDRVAKLYQLDTY PHQIEVITSEQMMDAYSSVGMPINYPHWSFGKKFIETERLYKHGQQGLAYEIVINSNP CIAYLMEENTITMQALVMAHACYGHNSFFKNNYLFRSWTDASSIVDYLIFARNYITRC EERYGVDEVEKLLDSCHALMNYGVDRYKRPQKISLQEEKARQKSREEYLQSQVNMLWR TLPKREEEKTVAEARRFPAEPQENLLYFMEKNAPLLEPWQREILRIVRKVSQYFYPQK QTQVMNEGWATFWHYTILNHLYDEGKVTERFMLEFLHSHTNVVFQPPYNSPWYSGINP YALGFAMFQDIKRICQSPTDEDKYWFPDIAGSDWLETLHFAMRDFKDESFISQFLSPK VMRDFRFFTVLDDDRHNYLEISAIHNEEGYREIRSKLSSQYNLSNLEPNIQVWNVDLR GDRSLTLRYIPHNRAPLDKGRKEVLKHVHRLWGFDVMLEQQNEDGSVELLERCPPRMN ML" misc_feature 1904328..1905821 /gene="ycgB" /locus_tag="STM1804" /note="SpoVR family protein; Provisional; Region: PRK11767" /db_xref="CDD:236973" gene complement(1905883..1906616) /gene="fadR" /locus_tag="STM1805" /db_xref="GeneID:1253324" CDS complement(1905883..1906602) /gene="fadR" /locus_tag="STM1805" /note="GntR family; similar to E. coli negative regulator for fad regulon, and positive activator of fabA (AAC74271.1); Blastp hit to AAC74271.1 (239 aa), 97% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="negative regulator of fad regulon" /protein_id="NP_460761.1" /db_xref="GeneID:1253324" /translation="MVIKAQSPAGFAEEYIIESIWNNRFPPGTILPAERELSELIGVT RTTLREVLQRLARDGWLTIQHGKPTKVNNFWETSGLNILETLARLDHESVPQLIDNLL SVRTNISTIFIRTALRQHPDKAQEVLATAHEVADHADAFADLDYNIFRGLAFASGNPI YGLILNGMKGLYTRIGRHYFANPEARSLALGFYHKLSSLCEQGAHDQVYETVRRYGHD SGEIWHRMQKNLPGDLAIQGR" misc_feature complement(1905886..1906602) /gene="fadR" /locus_tag="STM1805" /note="fatty acid metabolism transcriptional regulator FadR; Region: PRK04984" /db_xref="CDD:179909" regulatory complement(1906611..1906616) /regulatory_class="ribosome_binding_site" /gene="fadR" /locus_tag="STM1805" /note="putative RBS for fadR; RegulonDB:STMS1H001979" gene 1906809..1908366 /gene="nhaB" /locus_tag="STM1806" /db_xref="GeneID:1253325" regulatory 1906809..1906814 /regulatory_class="ribosome_binding_site" /gene="nhaB" /locus_tag="STM1806" /note="putative RBS for nhaB; RegulonDB:STMS1H001980" CDS 1906822..1908366 /gene="nhaB" /locus_tag="STM1806" /note="Na+/H+ antiporter; regulator of intracellular pH; similar to E. coli Na+/H+ antiporter, pH independent (AAC74270.1); Blastp hit to AAC74270.1 (513 aa), 92% identity in aa 1 - 513" /codon_start=1 /transl_table=11 /product="NhaB family of transport protein" /protein_id="NP_460762.1" /db_xref="GeneID:1253325" /translation="MEISWGRAMWRNFLGQSPDWYKLALLVFLIVNPFIFLANPFIAG WLLVAEFIFTLAMALKCYPLLPGGLLAIEAVIIGMTSAAHVREEVAANLEVLLLLMFM VAGIYFMKQLLLFIFTRLLLSIRSKMVLSLAFCVAAAFLSAFLDALTVVAVVISVAVG FYGIYHRVASSRGEENDMLDDSHIDPHYKTVLEQFRGFLRSLMMHAGVGTALGGVMTM VGEPQNLIIAKAAGWHFGDFFLRMSPVTVPVLVCGLLTCMLVEKMRWFGYGETLPEKV RDVLQQFDDQSRKKRTRQDKIKLIVQAIIGVWLVTALALHLAEVGLIGLSVIILATAL TGVTDEHAIGKAFTESLPFTALLTVFFSIVAVIIDQHLFAPIIQFVLQASEHAQLTLF YLFNGLLSSISDNVFVGTIYINEAKAAMENGAISLKQFELLAVAINTGTNLPSVATPN GQAAFLFLLTSALAPLIRLSYGRMVWMALPYTIVLTLIGLLCVEFTLAPATEWMTQAG WLATLS" misc_feature 1906822..1908351 /gene="nhaB" /locus_tag="STM1806" /note="sodium/proton antiporter NhaB; Region: nhaB; PRK09547" /db_xref="CDD:181942" misc_feature order(1907026..1907049,1907092..1907145,1907212..1907256, 1907260..1907274,1907302..1907340,1907353..1907358, 1907425..1907490,1907554..1907589,1907608..1907616, 1907710..1907748,1907770..1907814,1907857..1907913, 1907983..1908030,1908109..1908150,1908163..1908180, 1908256..1908294) /gene="nhaB" /locus_tag="STM1806" /note="transmembrane helices; other site" /db_xref="CDD:238344" gene 1908495..1909038 /gene="dsbB" /locus_tag="STM1807" /db_xref="GeneID:1253326" regulatory 1908495..1908500 /regulatory_class="ribosome_binding_site" /gene="dsbB" /locus_tag="STM1807" /note="putative RBS for dsbB; RegulonDB:STMS1H001981" CDS 1908508..1909038 /gene="dsbB" /locus_tag="STM1807" /note="reoxidizes DsbA protein; similar to E. coli reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (AAC74269.1); Blastp hit to AAC74269.1 (176 aa), 85% identity in aa 1 - 176" /codon_start=1 /transl_table=11 /product="putative disulfide oxidoreductase" /protein_id="NP_460763.1" /db_xref="GeneID:1253326" /translation="MLRFLNQCSRGRGAWLLMAFTALALEMVALWFQHVMLLKPCVLC IYERCALFGVMGAGLVGAIAPKTPLRYVAMVIWIYSAWRGLQLAYEHTMIQLHPSPFM TCDFMARFPDWLPLGKWLPQVFVASGDCAERQWSFLTLEMPQWLLGIFAAYLVVAIAV VIAQAFKPKKRDLFGR" misc_feature 1908508..1909032 /gene="dsbB" /locus_tag="STM1807" /note="disulfide bond formation protein DsbB; Region: PRK01749" /db_xref="CDD:234979" gene 1909141..1909488 /locus_tag="STM1808" /db_xref="GeneID:1253327" regulatory 1909141..1909146 /regulatory_class="ribosome_binding_site" /locus_tag="STM1808" /note="putative RBS for STM1808; RegulonDB:STMS1H001982" CDS 1909147..1909488 /locus_tag="STM1808" /note="similar to E. coli orf, hypothetical protein (AAC74867.1); Blastp hit to AAC74867.1 (119 aa), 42% identity in aa 2 - 113" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460764.1" /db_xref="GeneID:1253327" /translation="MSHLRIPANWKVKRSTPFFTKENVPAALLSHHNTAAGVFGQLCV MEGTVTYYGFANETATEPEVKVVINAGQFATSPPQYWHRVELSDDARFNIHFWVEEDH QGEEMYQQKKA" misc_feature 1909153..1909449 /locus_tag="STM1808" /note="Tellurite resistance protein TehB, SAM-dependent methylase, cupin superfamily [Inorganic ion transport and metabolism]; Region: TehB; COG3615" /db_xref="CDD:442833" gene complement(1909560..1909746) /locus_tag="STM1809" /db_xref="GeneID:1253328" CDS complement(1909560..1909733) /locus_tag="STM1809" /note="similar to E. coli orf, hypothetical protein (AAC74623.1); Blastp hit to AAC74623.1 (58 aa), 56% identity in aa 2 - 58" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460765.1" /db_xref="GeneID:1253328" /translation="MNSEELTHKAEEEIAALISKKVAELRKKTGQEVSEIEFAPRETM KGLEGYHVKIKLL" misc_feature complement(1909572..1909733) /locus_tag="STM1809" /note="GnsA/GnsB toxin of bacterial toxin-antitoxin system; Region: GnsAB_toxin; pfam08178" /db_xref="CDD:285401" regulatory complement(1909741..1909746) /regulatory_class="ribosome_binding_site" /locus_tag="STM1809" /note="putative RBS for STM1809; RegulonDB:STMS1H001983" gene complement(1909925..1910067) /locus_tag="STM1810" /db_xref="GeneID:1253329" CDS complement(1909925..1910062) /locus_tag="STM1810" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460766.1" /db_xref="GeneID:1253329" /translation="MSERPDLVDPLPEDEPLPGENIPDTPEGDDPLDPDTQNEVEDPR R" misc_feature complement(<1909934..>1910050) /locus_tag="STM1810" /note="intestinal colonization autotransporter adhesin MisL; Region: PRK15313" /db_xref="CDD:237940" regulatory complement(1910062..1910067) /regulatory_class="ribosome_binding_site" /locus_tag="STM1810" /note="putative RBS for STM1810; RegulonDB:STMS1H001984" gene complement(1910414..1910894) /gene="ycgN" /locus_tag="STM1811" /db_xref="GeneID:1253330" CDS complement(1910414..1910875) /gene="ycgN" /locus_tag="STM1811" /note="similar to E. coli orf, hypothetical protein (AAC74265.1); Blastp hit to AAC74265.1 (158 aa), 92% identity in aa 6 - 158" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460767.3" /db_xref="GeneID:1253330" /translation="MADTLMSDTPFWQRKTLDEMTDAEWESLCDGCGQCCLHKLMDED TDEIYFTNVACRQLNIKTCQCRHYERRFEFEPDCIKLTRENLPDFEWLPMTCAYRLLA EGKPLPTWHPLLTGSKAAMHGERISVRHIAVKESEVRDWQDHILNKPSWAE" misc_feature complement(1910420..1910860) /gene="ycgN" /locus_tag="STM1811" /note="YcgN family cysteine cluster protein; Region: PRK05170" /db_xref="CDD:235356" regulatory complement(1910889..1910894) /regulatory_class="ribosome_binding_site" /gene="ycgN" /locus_tag="STM1811" /note="putative RBS for ycgN; RegulonDB:STMS1H001985" gene complement(1910953..1911623) /gene="ycgM" /locus_tag="STM1812" /db_xref="GeneID:1253331" CDS complement(1910953..1911612) /gene="ycgM" /locus_tag="STM1812" /note="similar to E. coli putative isomerase (AAC74264.1); Blastp hit to AAC74264.1 (219 aa), 84% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="putative fumarylacetoacetate (FAA) hydrolase family protein" /protein_id="NP_460768.1" /db_xref="GeneID:1253331" /translation="MYQHRNWQGALLDYPVSKVVCVGSNYANHIKEMGSATPEEPVLF IKPETALCDIRQPLAIPADMGAVHHEVELAVLIGATLRQATEDHVRKAIAGYGVALDL TLRDIQGKMKKAGQPWEKAKGFDNACPISGFIPVAAFCGDPQNTVIGLNVNGEVRQQG STADMIHPIVPLIAYMSRYFTLKAGDVVLTGTPAGVGPLLSGDELDIRFNGETLSTRV L" misc_feature complement(1910956..1911612) /gene="ycgM" /locus_tag="STM1812" /note="fumarylacetoacetate hydrolase family protein; Region: PRK10691" /db_xref="CDD:182650" regulatory complement(1911618..1911623) /regulatory_class="ribosome_binding_site" /gene="ycgM" /locus_tag="STM1812" /note="putative RBS for ycgM; RegulonDB:STMS1H001986" gene complement(1911662..1911994) /gene="ycgL" /locus_tag="STM1813" /db_xref="GeneID:1253332" CDS complement(1911662..1911994) /gene="ycgL" /locus_tag="STM1813" /note="similar to E. coli orf, hypothetical protein (AAC74263.1); Blastp hit to AAC74263.1 (108 aa), 84% identity in aa 6 - 108" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460769.1" /db_xref="GeneID:1253332" /translation="MRQVTIPLIQSKSMFCVIYRSSKRDQTYLYVEKKDDFSRVPEAL MKGFGQPQLAMMLPLDGRKKLVNAELEKVKQALSEQGYYLQLPPPPEDLLKQHLSSVG QNTSPADR" misc_feature complement(1911701..1911955) /gene="ycgL" /locus_tag="STM1813" /note="Uncharacterized conserved protein YcgL, UPF0745 family [Function unknown]; Region: YcgL; COG3100" /db_xref="CDD:442334" gene 1912072..1912788 /gene="minC" /locus_tag="STM1814" /db_xref="GeneID:1253333" regulatory 1912072..1912077 /regulatory_class="ribosome_binding_site" /gene="minC" /locus_tag="STM1814" /note="putative RBS for minC; RegulonDB:STMS1H001987" CDS 1912081..1912788 /gene="minC" /locus_tag="STM1814" /note="activated MinC inhibits FtsZ ring formation; similar to E. coli cell division inhibitor, inhibits ftsZ ring formation (AAC74260.1); Blastp hit to AAC74260.1 (231 aa), 84% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="cell division inhibitor" /protein_id="NP_460770.1" /db_xref="GeneID:1253333" /translation="MSNTPIELKGSSFTLSVVHLHEAEPEVIRQALEDKIAQAPAFLK HAPVVINVSGLESPVNWPELHKIVTSTGLRIIGVSGCKDASLKVEIDRMGLPLLTEGK EKAVRPAPVEPATPSEPPQNANPITKTRLIDVPVRSGQRIYAPQCDLIVTSHVSAGAE LIADGNIHVYGMMRGRALAGASGDREAQIFCTHLTAELVSIAGVYWLSDKIPAEFYGK AARLRLADNALTVQPLN" misc_feature 1912081..1912785 /gene="minC" /locus_tag="STM1814" /note="Septum site-determining protein MinC [Cell cycle control, cell division, chromosome partitioning]; Region: MinC; COG0850" /db_xref="CDD:440611" gene 1912801..1913624 /gene="minD" /locus_tag="STM1815" /db_xref="GeneID:1253334" regulatory 1912801..1912806 /regulatory_class="ribosome_binding_site" /gene="minD" /locus_tag="STM1815" /note="putative RBS for minD; RegulonDB:STMS1H001988" CDS 1912812..1913624 /gene="minD" /locus_tag="STM1815" /note="a membrane ATPase, activates MinC, directs division apparatus to middle of cell by oscillating from one half to other; similar to E. coli cell division inhibitor, a membrane ATPase, activates minC (AAC74259.1); Blastp hit to AAC74259.1 (270 aa), 97% identity in aa 1 - 270" /codon_start=1 /transl_table=11 /product="cell division inhibitor" /protein_id="NP_460771.1" /db_xref="GeneID:1253334" /translation="MARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFDIGLR NLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKRTENLFILPASQTRDKDALTREGV AKVLDSLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDRILGIL ASKSRRAENGEEPIKEHLLLTRYNPGRVNKGDMLSMEDVLEILRIKLVGVIPEDQSVL RASNQGEPVILDATADAGKAYADTVDRLLGEERPFRFIEEEKKGFLKRLFGG" misc_feature 1912812..1913621 /gene="minD" /locus_tag="STM1815" /note="septum site-determining protein MinD; Region: PRK10818" /db_xref="CDD:182756" gene 1913617..1913894 /gene="minE" /locus_tag="STM1816" /db_xref="GeneID:1253335" regulatory 1913617..1913622 /regulatory_class="ribosome_binding_site" /gene="minE" /locus_tag="STM1816" /note="putative RBS for minE; RegulonDB:STMS1H001989" CDS 1913628..1913894 /gene="minE" /locus_tag="STM1816" /note="reverses MinC inhibition of FtsZ ring formation; similar to E. coli cell division topological specificity factor, reverses MinC inhibition of ftsZ ring formation (AAC74258.1); Blastp hit to AAC74258.1 (88 aa), 97% identity in aa 1 - 88" /codon_start=1 /transl_table=11 /product="cell division topological specificity factor" /protein_id="NP_460772.1" /db_xref="GeneID:1253335" /translation="MALLDFFLSRKKSTANIAKERLQIIVAERRRSDAEPHYLPQLRK DILEVICKYVQIDPEMVTVQLEQKDGDISILELNVTLPEAEESK" misc_feature 1913628..1913888 /gene="minE" /locus_tag="STM1816" /note="cell division topological specificity factor MinE; Reviewed; Region: minE; PRK00296" /db_xref="CDD:234718" gene complement(1914016..1915154) /gene="rnd" /locus_tag="STM1817" /db_xref="GeneID:1253336" CDS complement(1914016..1915143) /gene="rnd" /locus_tag="STM1817" /EC_number="3.1.26.3" /note="processes tRNA precursor; similar to E. coli RNase D, processes tRNA precursor (AAC74874.1); Blastp hit to AAC74874.1 (375 aa), 86% identity in aa 1 - 374" /codon_start=1 /transl_table=11 /product="RNase D" /protein_id="NP_460773.1" /db_xref="GeneID:1253336" /translation="MNYQMIETDDALASLCEAVRACPAIALDTEFVRTRTYYPQLGLI QLFDGANVALIDPLGISDWSPLKAVLRDTGITKFLHAGSEDLEVFLNAFGELPEPLID TQILAAFCGRPLSWGFASMVEEYTGVALDKSESRTDWLARPLSERQCEYAAADVWYLL PIAKKLMIETEAAGWLPAALDECRLMQQRRQEIQAPEEAWRDITNAWQLRTRQLACLQ LLADWRLRKARERDMAVNFVVREENLWAVARYMPGSLGELDSLGLSGSEIRFHGKTLI SLVAKAQALPEEALPEPLLNLMDMPGYRKAFKAIKALVAEVSASHHVSGELLASRRQI NQLLNWHWKLKPQNGQPELISGWRAELMEEKLTLLLQEYPL" misc_feature complement(1914025..1915143) /gene="rnd" /locus_tag="STM1817" /note="ribonuclease D; Provisional; Region: PRK10829" /db_xref="CDD:236771" regulatory complement(1915149..1915154) /regulatory_class="ribosome_binding_site" /gene="rnd" /locus_tag="STM1817" /note="putative RBS for rnd; RegulonDB:STMS1H001990" gene complement(1915216..1916912) /gene="fadD" /locus_tag="STM1818" /db_xref="GeneID:1253337" CDS complement(1915216..1916901) /gene="fadD" /locus_tag="STM1818" /EC_number="6.2.1.3" /note="long-chain-fatty-acid--CoA ligase; similar to E. coli acyl-CoA synthetase, long-chain-fatty-acid--CoA ligase (AAC74875.1); Blastp hit to AAC74875.1 (561 aa), 93% identity in aa 1 - 561" /codon_start=1 /transl_table=11 /product="acyl-CoA synthetase" /protein_id="NP_460774.1" /db_xref="GeneID:1253337" /translation="MKKVWLNRYPADVPAEINPDRYQSLVELFEHAATRYADQPAFVN MGEVMTFRKLEERSRAFAAYLQQGLGLKKGDRVALMMPNLLQYPVALFGILRAGMIVV NVNPLYTPRELEHQLNDSGAAAIIIVSNFAHTLEKVVEKTSVQHVILTRMGDQLSTAK GTVVNFVVKYIKRLVPKYHLPDAISFRSALQHGYRMQYVKPEVVAEDLAFLQYTGGTT GVAKGAMLTHRNMLANLEQVKATYGPLLHPGKELVVTALPLYHIFALTMNCLLFIELG GQNLLITNPRDIPGLVKELAKYPFTAMTGVNTLFNALLNNKEFQQLDFSSLHLSAGGG MPVQNVVAERWVKLTGQYLLEGYGLTECAPLVSVNPHDIDYHSGSIGLPVPSTEAKLV DDDDNEVAPGEAGELCVKGPQVMLGYWQRPDATDEIIKDGWLHTGDIAVMDEDGFLRI VDRKKDMILVSGFNVYPNEIEDVVMQHSGVQEVAAVGVPSGSSGEAVKLFVVKKDPAL TDDALITFCRRHLTGYKVPKQVEFREELPKSNVGKILRRELRDEARGKVDNKA" misc_feature complement(1915222..1916901) /gene="fadD" /locus_tag="STM1818" /note="long-chain-fatty-acid--CoA ligase FadD; Region: PRK08974" /db_xref="CDD:236359" misc_feature complement(order(1916236..1916241,1916245..1916262, 1916269..1916271)) /gene="fadD" /locus_tag="STM1818" /note="acyl-activating enzyme (AAE) consensus motif; other site" /db_xref="CDD:341259" misc_feature complement(order(1915273..1915275,1915510..1915512, 1915543..1915545,1915552..1915554,1915588..1915590, 1915822..1915839,1915900..1915905,1916260..1916262)) /gene="fadD" /locus_tag="STM1818" /note="putative AMP binding site [chemical binding]; other site" /db_xref="CDD:341259" misc_feature complement(order(1915330..1915332,1915510..1915521, 1915543..1915545,1915552..1915554,1915588..1915590, 1915822..1915839,1915900..1915905,1915966..1915968, 1915975..1915980,1915984..1915986,1916128..1916133, 1916260..1916262)) /gene="fadD" /locus_tag="STM1818" /note="putative active site [active]" /db_xref="CDD:341259" misc_feature complement(order(1915330..1915332,1915348..1915350, 1915513..1915521,1915903..1915905,1915966..1915968, 1915975..1915980,1916131..1916133)) /gene="fadD" /locus_tag="STM1818" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:341259" regulatory complement(1916907..1916912) /regulatory_class="ribosome_binding_site" /gene="fadD" /locus_tag="STM1818" /note="putative RBS for fadD; RegulonDB:STMS1H001991" gene complement(1917106..1917700) /gene="slp" /locus_tag="STM1819" /db_xref="GeneID:1253338" CDS complement(1917106..1917687) /gene="slp" /locus_tag="STM1819" /note="similar to E. coli putative outer membrane protein (AAC74876.1); Blastp hit to AAC74876.1 (193 aa), 90% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_460775.1" /db_xref="GeneID:1253338" /translation="MAVQKRLIKGALACAFALMLSGCVTIPDAIKGSSPTPQQDLVRV MNAPQLYIGQEARFGGKVVAVQNQQGKTRLEIATVPLDSGARPVLGEASRGRIFADVN GFLDPVDFRGQLVTVVGPITGTVDGKIGNTPYKFMLMQATGYKRWHLVQQVVMPPQPI DPWFYGGRAWPYGYGGWGWYNPGPAEVQTIVTE" misc_feature complement(1917121..1917672) /gene="slp" /locus_tag="STM1819" /note="outer membrane lipoprotein, Slp family; Region: slp; TIGR00752" /db_xref="CDD:273251" regulatory complement(1917695..1917700) /regulatory_class="ribosome_binding_site" /gene="slp" /locus_tag="STM1819" /note="putative RBS for slp; RegulonDB:STMS1H001992" gene complement(1917759..1918465) /gene="yeaZ" /locus_tag="STM1820" /db_xref="GeneID:1253339" CDS complement(1917759..1918454) /gene="yeaZ" /locus_tag="STM1820" /note="similar to E. coli orf, hypothetical protein (AAC74877.1); Blastp hit to AAC74877.1 (231 aa), 85% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="putative molecular chaperone" /protein_id="NP_460776.1" /db_xref="GeneID:1253339" /translation="MRILAIDTATEACSVALWNNGTINAHFELCPREHTQRILPMVQE ILAASGASLNEIDALAFGRGPGSFTGVRIGIGIAQGLALGANLPMIGVSTLATMAQGA WRKTGATRVLAAIDARMGEVYWAEYQRDAQGVWQGEETEAVLKPERVGERLKQLSGEW ATVGTGWSAWPDLAKECGLTLHDGEVSLPAAEDMLPIASQKLAAGETVAVEHAEPVYL RNEVAWKKLPGKE" misc_feature complement(1917762..1918454) /gene="yeaZ" /locus_tag="STM1820" /note="tRNA A37 threonylcarbamoyladenosine modification protein TsaB [Translation, ribosomal structure and biogenesis]; Region: TsaB; COG1214" /db_xref="CDD:440827" regulatory complement(1918460..1918465) /regulatory_class="ribosome_binding_site" /gene="yeaZ" /locus_tag="STM1820" /note="putative RBS for yeaZ; RegulonDB:STMS1H001993" gene complement(1918512..1920433) /gene="yoaA" /locus_tag="STM1821" /db_xref="GeneID:1253340" CDS complement(1918512..1920422) /gene="yoaA" /locus_tag="STM1821" /note="similar to E. coli putative enzyme (AAC74878.1); Blastp hit to AAC74878.1 (636 aa), 95% identity in aa 1 - 635" /codon_start=1 /transl_table=11 /product="putative DNA helicase" /protein_id="NP_460777.1" /db_xref="GeneID:1253340" /translation="MTDDFAADGQLAKAITGFKPREPQRQMAVAVTQAIENAQPLVVE AGTGTGKTYAYLAPALRAGKKVIISTGSKALQDQLYSRDLPTVAKALAFTGKTALLKG RSNYLCLERLEQQALAGGDLPVQTLSDVILLRSWSNQTRDGDISTCVSVAEDSQAWPL VTSTNDNCLGSDCPLYKECFVVKARKKAMDADVVIVNHHLFLADMVVKESGFGELIPQ AEVMIFDEAHQLPDIASQYFGQSLSSRQLLDLAKDITIAYRTELKDTQQLQKCADRLA QSAQDFRLQLGEPGYRGNLRELLADSRIQRAFLLLDDTLELCYDVAKLSLGRSALLDA AFERATLYRSRLKRLKEINQPGYSYWYECTSRHFTLALTPLTVADKFKEVMEQKPGSW IFTSATLSVNDDLHHFTARLGIEQAESMLLPSPFDYTRQALLCVPRNLPQTNQPGAAR QLAAMLRPIIEANNGRCFMLCTSHAMMRDLAEQFRATMTLPVLLQGETSKGQLLQQFV SAGNALLVATSSFWEGVDVRGDTLSLVIIDKLPFTSPDDPLLKARMEDCRLRGGDPFD EVQLPDAVITLKQGVGRLIRDADDRGVLVICDNRLVMRPYGATFLASLPPAPRTRDIA RAVRFLAIPSAE" misc_feature complement(1918530..1920407) /gene="yoaA" /locus_tag="STM1821" /note="Rad3-related DNA helicase DinG [Replication, recombination and repair]; Region: DinG; COG1199" /db_xref="CDD:440812" regulatory complement(1920428..1920433) /regulatory_class="ribosome_binding_site" /gene="yoaA" /locus_tag="STM1821" /note="putative RBS for yoaA; RegulonDB:STMS1H001994" gene 1920541..1920897 /gene="yoaB" /locus_tag="STM1822" /db_xref="GeneID:1253341" regulatory 1920541..1920546 /regulatory_class="ribosome_binding_site" /gene="yoaB" /locus_tag="STM1822" /note="putative RBS for yoaB; RegulonDB:STMS1H001995" CDS 1920553..1920897 /gene="yoaB" /locus_tag="STM1822" /note="similar to E. coli orf, hypothetical protein (AAC74879.1); Blastp hit to AAC74879.1 (130 aa), 92% identity in aa 17 - 130" /codon_start=1 /transl_table=11 /product="putative translation initiation inhibitor" /protein_id="NP_460778.1" /db_xref="GeneID:1253341" /translation="MSIVRIDAEDRWSDVVIYNNTLWYTGVPENLDADAFEQTANTLA QIDAVLEKQGSSKSRILDATIFLSDKADFAAMNKAWDAWVVAGHAPVRCTVQAGLMNP KYKVEIKIVAAV" misc_feature 1920583..1920891 /gene="yoaB" /locus_tag="STM1822" /note="This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence...; Region: YjgF_YER057c_UK114_like_2; cd06150" /db_xref="CDD:100007" misc_feature order(1920586..1920591,1920598..1920600,1920604..1920606, 1920613..1920615,1920619..1920621,1920625..1920630, 1920727..1920729,1920733..1920738,1920742..1920744, 1920748..1920750,1920781..1920783,1920790..1920792, 1920802..1920804,1920817..1920843,1920871..1920873, 1920877..1920879,1920883..1920885) /gene="yoaB" /locus_tag="STM1822" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100007" misc_feature order(1920586..1920588,1920769..1920771,1920781..1920783, 1920826..1920828,1920871..1920873) /gene="yoaB" /locus_tag="STM1822" /note="putative active site [active]" /db_xref="CDD:100007" gene complement(1920903..1921094) /gene="yoaH" /locus_tag="STM1823" /db_xref="GeneID:1253342" CDS complement(1920903..1921082) /gene="yoaH" /locus_tag="STM1823" /note="hypothetical protein in fadD-pabB intergenic region. (SW:YOAH_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460779.1" /db_xref="GeneID:1253342" /translation="MFAGLPSLSHEQQQKAVERIQELMSQGMSSGEAIAQVAGELRAN HTGERIVARFEDEDE" misc_feature complement(1920909..1921082) /gene="yoaH" /locus_tag="STM1823" /note="Uncharacterized conserved protein YoaH, UPF0181 family [Function unknown]; Region: yoaH; COG3140" /db_xref="CDD:442374" regulatory complement(1921089..1921094) /regulatory_class="ribosome_binding_site" /gene="yoaH" /locus_tag="STM1823" /note="putative RBS for yoaH; RegulonDB:STMS1H001996" gene 1921151..1922527 /gene="pabB" /locus_tag="STM1824" /db_xref="GeneID:1253343" regulatory 1921151..1921156 /regulatory_class="ribosome_binding_site" /gene="pabB" /locus_tag="STM1824" /note="putative RBS for pabB; RegulonDB:STMS1H001997" CDS 1921163..1922527 /gene="pabB" /locus_tag="STM1824" /EC_number="4.1.3.-" /note="para-aminobenzoate synthase component I. (SW:PABB_SALTY)" /codon_start=1 /transl_table=11 /product="p-aminobenzoate synthetase, component I" /protein_id="NP_460780.1" /db_xref="GeneID:1253343" /translation="MMKTLSPTVITLPWRPDAAEHYFAPVNHLPWAMLLHSGDAIHPY NRFDILVADPVTTLTTRAQETTVCTARTTTVTLDDPLHVLQTQLEALPFHPQPDPDLP FQGGALGLFGYDLGRRFEILPDTAARDIALPDMAIGLYDWALIVDHQKQVVSLISYHD ADARYRWLTSQRAPTRTPFRLTSAWQSNMTRCEYGEKFRQVQAWLHSGDCYQVNLSQR FQASYEGDEWQAFERLNRANRAPFSAFLRLHDGAILSLSPERFIQLENGHIQTRPIKG TLPRLNDPQADRQQAQKLANSMKDRAENLMIVDLMRNDIGRVAVPGSVKVPELFVVEP FPAVHHLVSTITARLPDSLHATDLLRAAFPGGSITGAPKVRAMEIIDELEPQRRNAWC GSIGYLSFCGKMDTSITIRTVTATQGQLYCSAGGGIVADSNEEAEYQETFDKVNRILH PLEN" misc_feature 1921166..1922524 /gene="pabB" /locus_tag="STM1824" /note="aminodeoxychorismate synthase component 1; Region: pabB; PRK15465" /db_xref="CDD:185362" gene 1922516..1923109 /gene="yeaB" /locus_tag="STM1825" /db_xref="GeneID:1253344" regulatory 1922516..1922521 /regulatory_class="ribosome_binding_site" /gene="yeaB" /locus_tag="STM1825" /note="putative RBS for yeaB; RegulonDB:STMS1H001998" CDS 1922531..1923109 /gene="yeaB" /locus_tag="STM1825" /note="hypothetical protein in pabB-sdaA intergenic region. (SW:YEAB_SALTY)" /codon_start=1 /transl_table=11 /product="putative NTP pyrophosphohydrolase" /protein_id="NP_460781.1" /db_xref="GeneID:1253344" /translation="MDTSRLTLDHFLSRFQLLRPQMTHETLNQRQAAVLIPVVRRPQP GLLLTQRAIHLRKHAGQVAFPGGAVDSTDASLIAAALREAQEEVAIPPQAVEVIGVLP PVDSVTGFQVTPVVGIIPPNLPWRASEDEVSAVFEMPLAQALQLGRYHPLDVYRRGNS HRVWLSWYEHYFVWGMTANILRELALQIGVKP" misc_feature 1922531..1923100 /gene="yeaB" /locus_tag="STM1825" /note="putative NUDIX hydrolase; Provisional; Region: PRK10707" /db_xref="CDD:182663" gene 1923360..1924737 /gene="sdaA" /locus_tag="STM1826" /db_xref="GeneID:1253345" regulatory 1923360..1923365 /regulatory_class="ribosome_binding_site" /gene="sdaA" /locus_tag="STM1826" /note="putative RBS for sdaA; RegulonDB:STMS1H001999" CDS 1923373..1924737 /gene="sdaA" /locus_tag="STM1826" /EC_number="4.3.1.17" /note="similar to E. coli L-serine deaminase (AAC74884.1); Blastp hit to AAC74884.1 (454 aa), 94% identity in aa 1 - 454" /codon_start=1 /transl_table=11 /product="L-serine deaminase I/L-threonine deaminase I" /protein_id="NP_460782.1" /db_xref="GeneID:1253345" /translation="MISLFDMFKVGIGPSSSHTVGPMKAGKQFVDDLVEKGLLDNVTR VAVDVYGSLSLTGKGHHTDIAIIMGLAGNEPATVDIDSIPGFIRDVETRERLLLAQGR HEVDFPKDDGMRFHNGNLPLHENGMQIHAWHDDTVIYSKTYYSIGGGFIVDEEHFGQE ATNEVTVPYPFKSAKEMLEYCNSTGLSLSGMVMQNELALHSKKEIEEYFGHVWQTMQA CIDRGMNTEGVLPGPLRVPRRASALRRMLVSSDKLSSDPMNVIDWVNMFALAVNEENA AGGRVVTAPTNGACGIVPAVLAYYDHFIESVSPDIYTRYFLAAGAIGALYKMNASISG AEVGCQGEVGVACSMAAAGLAELLGASPEQVCVAAEIGMEHNLGLTCDPVAGQVQVPC IERNAIASVKAINAARMAMRRTSAPRVSLDKVIETMYETGKDMNAKYRETSRGGLAIK VQCD" misc_feature 1923373..1924734 /gene="sdaA" /locus_tag="STM1826" /note="L-serine deaminase; Provisional; Region: PRK15023" /db_xref="CDD:184984" gene 1924773..1926476 /locus_tag="STM1827" /db_xref="GeneID:1253346" CDS 1924773..1926476 /locus_tag="STM1827" /note="similar to E. coli orf, hypothetical protein (AAC74885.1); Blastp hit to AAC74885.1 (542 aa), 75% identity in aa 5 - 540" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase" /protein_id="NP_460783.3" /db_xref="GeneID:1253346" /translation="MGEIFISSSSTPRFPTTLAVSRLAFVANAYWAARMQTAQRIINH YRRNRFIVCTICALVTLILTLSIRFISERNLNHHRTVAFANHAVDALDNVLHPLLVGR NILLPLLELPCATAHLPLRKQAARLQTIRSIGLVKEGILYCSSIFGARNTPIRQLQPD LPAVGDLLLLSTDQSLLKGSPILIQWYPASADGQDGVMEIVNIDLLTTMLLEPQQPQI TSASLTVGKRHLLYGRGVVDTLPELKKDEERYQLSSRHFPFTISVSGPSAGVLAFKHL PTQLPLAVLLSLLIGYIAWLATASRMSFSWEINLALAEREFELFCQPLLNARTQQCTG VEILLRWNNPRQGWISPDVFIPIAEEHNLIAPLTRYVIAETIRQRHYFPINHQFHIGI NVAASHFRHGVLLKDLNQYWFSAEPVQQLVLELTERDALLDVDYRLMRELHRKGVKLA IDDFGTGNSSLSWLEKLRPDILKIDKSFTAAIGTDAVNSTVTDIIIALGQRLNIELVA EGVENQTQAQHLRQHGVQMLQGYLYAKPMPISEFPQWLAGSAPPPARHNGQIMSAMPH L" misc_feature 1924902..1926443 /locus_tag="STM1827" /note="Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal transduction mechanisms]; Region: YjcC; COG4943" /db_xref="CDD:443970" gene complement(1926498..1928069) /gene="yoaE" /locus_tag="STM1828" /db_xref="GeneID:1253347" CDS complement(1926498..1928057) /gene="yoaE" /locus_tag="STM1828" /note="similar to E. coli putative transport protein (AAC74886.1); Blastp hit to AAC74886.1 (518 aa), 90% identity in aa 1 - 518" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460784.2" /db_xref="GeneID:1253347" /translation="MELLMDPSIWVGLLTLVVLEIVLGIDNLVFIAILADKLPPKQRD KARLIGLSLALIMRLALLSIISWLVTLTKPLFTVWDFTFSGRDLIMLLGGIFLLFKAT TELHERLENREHDTGHGKGYASFWVVVTQIVILDAVFSLDAVITAVGMVNHLPVMMAA VVIAMAVMLLASKPLTRFVNQHPTVVVLCLSFLLMIGLSLVAEGFGFHIPKGYLYAAI GFSIVIEVFNQIARRNFIRHQSTLPLRARTADAILRLMGGKRQASTQHETDSPAAISV SEGAFAEEERYMINGVLTLASRSLRGIMTPRGEISWVDANLSVAEIRQQLLSSPHSLF PVCRGELDEIIGIVRAKELLVALEEGADVAAIAASSPAIVVPETLDPINLLGVLRRAR GSFVIVTNEFGVVQGLVTPLDVLEAIAGEFPDADETPEIVADAEGWIVKGGTDLHALQ QALEVDHLVNEEGDIATVAGLVIAANGHIPRVGDVIDVPPLRITIVEANDYRVDLVRI VKEQPAHDEEE" misc_feature complement(1927386..1928057) /gene="yoaE" /locus_tag="STM1828" /note="Tellurite resistance membrane protein TerC [Inorganic ion transport and metabolism]; Region: TerC; COG0861" /db_xref="CDD:440622" misc_feature complement(1926504..1927625) /gene="yoaE" /locus_tag="STM1828" /note="Hemolysin-related protein, contains CBS domains, UPF0053 family [General function prediction only]; Region: TlyC; COG1253" /db_xref="CDD:440865" gene complement(1928045..1928380) /locus_tag="STM1829" /db_xref="GeneID:1253348" CDS complement(1928045..1928380) /locus_tag="STM1829" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460785.1" /db_xref="GeneID:1253348" /translation="MMEIRNFVFDNEKFRSVKYPGYISLQRKVNLCQKPVVSVMFSFR LIRMGYRAAARCMDRHRRHFTLWPFCACQSGISCHSLTLFIALPPASFEMLWAPFSHS LSRSLSWNY" regulatory complement(1928064..1928069) /regulatory_class="ribosome_binding_site" /locus_tag="STM1829" /note="putative RBS for yoaE; RegulonDB:STMS1H002000" protein_bind 1928323..1928351 /note="putative binding site for NagC, RegulonDB: STMS1H000303" /bound_moiety="NagC" protein_bind 1928325..1928345 /note="putative binding site for CRP, RegulonDB: STMS1H000041" /bound_moiety="CRP" gene 1928333..1929498 /gene="manX" /locus_tag="STM1830" /db_xref="GeneID:1253349" regulatory 1928333..1928341 /regulatory_class="minus_35_signal" /gene="manX" /locus_tag="STM1830" /note="putative -35_signal for manX; RegulonDB:STMLTH004514" regulatory 1928357..1928365 /regulatory_class="minus_10_signal" /gene="manX" /locus_tag="STM1830" /note="putative -10_signal for manX; RegulonDB:STMLTH004514" protein_bind 1928369..1928381 /gene="manX" /locus_tag="STM1830" /note="putative binding site for CRP, RegulonDB: STMS1H000037" /bound_moiety="CRP" protein_bind 1928383..1928409 /gene="manX" /locus_tag="STM1830" /note="putative binding site for NagC, RegulonDB: STMS1H000300" /bound_moiety="NagC" protein_bind 1928389..1928417 /gene="manX" /locus_tag="STM1830" /note="putative binding site for Mlc, RegulonDB: STMS1H000290" /bound_moiety="Mlc" regulatory 1928517..1928522 /regulatory_class="ribosome_binding_site" /gene="manX" /locus_tag="STM1830" /note="putative RBS for manX; RegulonDB:STMS1H002001" CDS 1928530..1929498 /gene="manX" /locus_tag="STM1830" /note="Sugar Specific PTS family; similar to E. coli PTS enzyme IIAB, mannose-specific (AAC74887.1); Blastp hit to AAC74887.1 (323 aa), 95% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="mannose-specific enzyme IIAB" /protein_id="NP_460786.1" /db_xref="GeneID:1253349" /translation="MTIAIVIGTHGWAAEQLLKTAEMLLGEQENVGWIDFVPGENAET LIEKYNAQLAKLDTSKGVLFLVDTWGGSPFNAASRIVVDKERYEVIAGVNIPMLVETF MARDDDPSFDELVALAVETGREGVKALKAKPVEKAAPAPVAAAPKAAAPAKPMGPNDY MVIGLARIDDRLIHGQVATRWTKETNVSRIIVVSDEVAADTVRKTLLTQVAPPGVTAH VVDVAKMIRVYNNPKYAGERVMLLFTNPTDVERIVEGGVKVTSVNIGGMAYRQGKTQV NNAVSVDEKDIEAFKKLNERGIELEVRKVSTDPKLKMMDLIAKVAK" misc_feature 1928530..1929489 /gene="manX" /locus_tag="STM1830" /note="PTS system mannose-specific transporter subunits IIAB; Provisional; Region: PRK15088" /db_xref="CDD:185045" gene 1929538..1930351 /gene="manY" /locus_tag="STM1831" /db_xref="GeneID:1253350" regulatory 1929538..1929543 /regulatory_class="ribosome_binding_site" /gene="manY" /locus_tag="STM1831" /note="putative RBS for manY; RegulonDB:STMS1H002002" CDS 1929551..1930351 /gene="manY" /locus_tag="STM1831" /note="Sugar Specific PTS family; similar to E. coli PTS enzyme IIC, mannose-specific (AAC74888.1); Blastp hit to AAC74888.1 (266 aa), 94% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="mannose-specific enzyme IIC" /protein_id="NP_460787.1" /db_xref="GeneID:1253350" /translation="MEITTLQIVLVFIVACIAGMESVLDEFQFHRPLIACTLIGAVLG DMKTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTVLVIAGHQSIGAGIALAIPL AAAGQVLTIIVRTITVAFQHAADKAAENGNLTALSWLHVSSLFLQAMRIAIPAVIVAI SVGTSEVQGMLNAIPEVVTGGLNIAGGMIVVVGYAMVINMMRAGYLMPFFYLGFVTAA FTNFNLVALGVIGAVMAILYIQLSPKYNRVAGAPAAAAGNNDLDNELD" misc_feature 1929551..1930339 /gene="manY" /locus_tag="STM1831" /note="mannose/fructose/sorbose family PTS transporter subunit IIC; Region: PRK15065" /db_xref="CDD:237895" gene 1930343..1931215 /gene="manZ" /locus_tag="STM1832" /db_xref="GeneID:1253351" regulatory 1930343..1930348 /regulatory_class="ribosome_binding_site" /gene="manY" /locus_tag="STM1831" /note="putative RBS for manZ; RegulonDB:STMS1H002003" CDS 1930355..1931215 /gene="manZ" /locus_tag="STM1832" /note="Sugar Specific PTS family; similar to E. coli PTS enzyme IID, mannose-specific (AAC74889.1); Blastp hit to AAC74889.1 (286 aa), 92% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="mannose-specific enzyme IID" /protein_id="NP_460788.1" /db_xref="GeneID:1253351" /translation="MSEMVDMTKTTTEKKLTPSDIRGVFLRSNLFQGSWNFERMQALG FCFSMVPAIRRLYPENNDARKQAIKRHLEFFNTHPYVAAPVLGVTLAMEEKRANGAEI DDGAINGIKVGLMGPLAGVGDPIFWGTVRPVFAALGAGIAMSGSLLGPLLFFILFNLV RLATRYYGVAYGYRKGVDIVKDMGGGFLQKLTEGASILGLFVMGALVNKWTHVNIPLV VSTITGQDGQTRVTTVQTILDQLMPGLVPLLLTFACMWLLRKKVNPLWIIVGFFVIGI AGYSVGLLGQ" misc_feature 1930364..1931209 /gene="manZ" /locus_tag="STM1832" /note="PTS mannose transporter subunit IID; Region: PRK11103" /db_xref="CDD:182965" gene 1931262..1931743 /locus_tag="STM1833" /db_xref="GeneID:1253352" regulatory 1931262..1931267 /regulatory_class="ribosome_binding_site" /locus_tag="STM1833" /note="putative RBS for STM1833; RegulonDB:STMS1H002004" CDS 1931273..1931743 /locus_tag="STM1833" /note="similar to E. coli orf, hypothetical protein (AAC74890.1); Blastp hit to AAC74890.1 (152 aa), 88% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460789.1" /db_xref="GeneID:1253352" /translation="MTITDLVLILFIAALLAYALYDQFIMPRRNGPTLLSIALLRRGR VDSVIFVGLVAILIYNNVTSHGAQMTTWLLSALALMGFYIFWIRTPRIIFKQRGFFFA NVWIEYNRIKEMNLSEDGVLVMQLEQRRLLIRVRNIDDLEKIYKLLIENQYLKI" misc_feature 1931279..1931728 /locus_tag="STM1833" /note="hypothetical protein; Provisional; Region: PRK02913" /db_xref="CDD:179499" gene 1932075..1932707 /gene="yebN" /locus_tag="STM1834" /db_xref="GeneID:1253353" regulatory 1932075..1932080 /regulatory_class="ribosome_binding_site" /gene="yebN" /locus_tag="STM1834" /note="putative RBS for yebN; RegulonDB:STMS1H002005" CDS 1932087..1932707 /gene="yebN" /locus_tag="STM1834" /note="similar to E. coli orf, hypothetical protein (AAC74891.1); Blastp hit to AAC74891.1 (206 aa), 90% identity in aa 1 - 206" /codon_start=1 /transl_table=11 /product="putative YebN family transport protein" /protein_id="NP_460790.1" /db_xref="GeneID:1253353" /translation="MFAGGSDVFNGYPGQDVVMHFTATVLLAFGMSMDAFAASIGKGA TLHKPKFSEALRTGLIFGAVETLTPLIGWGLGILASKFVLEWNHWIAFVLLIFLGGRM IIEGIRGGSDEDETPLRRHSFWLLVTTAIATSLDAMAVGVGLAFLQVNIIATALAIGC ATLIMSTLGMMIGRFIGPMLGKRAEILGGVVLIGIGVQILWTHFHG" misc_feature 1932141..1932704 /gene="yebN" /locus_tag="STM1834" /note="manganese efflux pump MntP; Region: PRK11469" /db_xref="CDD:183151" gene complement(1932704..1933524) /gene="rrmA" /locus_tag="STM1835" /db_xref="GeneID:1253354" CDS complement(1932704..1933513) /gene="rrmA" /locus_tag="STM1835" /note="similar to E. coli putative enzyme (AAC74892.1); Blastp hit to AAC74892.1 (269 aa), 80% identity in aa 1 - 268" /codon_start=1 /transl_table=11 /product="23S rRNA m1G745 methyltransferase" /protein_id="NP_460791.1" /db_xref="GeneID:1253354" /translation="MSFTCPLCHQPLTQINNSVICPQRHQFDVAKEGYINLLPVQHKR SRDPGDSAEMMQARRAFLDAGHYQPLRDAVINLLRERLDQSATAILDIGCGEGYYTHA FAEALPGVTTFGLDVAKTAIKAAAKRYSQVKFCVASSHRLPFADASMDAVIRIYAPCK AQELARVVKPGGWVVTATPGPHHLMELKGLIYDEVRLHAPYTEQLDGFTLQQSTRLAY HMQLTAEAAVALLQMTPFAWRARPDVWEQLAASAGLSCQTDFNLHLWQRNR" misc_feature complement(1932707..1933513) /gene="rrmA" /locus_tag="STM1835" /note="23S rRNA methyltransferase A; Provisional; Region: rrmA; PRK11088" /db_xref="CDD:236841" misc_feature complement(order(1933049..1933051,1933097..1933105, 1933166..1933168,1933220..1933240)) /gene="rrmA" /locus_tag="STM1835" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" regulatory complement(1933519..1933524) /regulatory_class="ribosome_binding_site" /gene="rrmA" /locus_tag="STM1835" /note="putative RBS for rrmA; RegulonDB:STMS1H002006" gene complement(1933579..1935331) /locus_tag="STM1836" /db_xref="GeneID:1253355" CDS complement(1933579..1935324) /locus_tag="STM1836" /note="similar to E. coli septum formation; penicillin-binding protein 3; peptidoglycan synthetase (AAC73195.1); Blastp hit to AAC73195.1 (588 aa), 63% identity in aa 9 - 581" /codon_start=1 /transl_table=11 /product="putative penicillin-binding protein-3" /protein_id="NP_460792.1" /db_xref="GeneID:1253355" /translation="MKKKSDGDTRNFTPIRFALLCTAILLSMALLLGRVAWLQIVTPS KLVKQEDMRSLREVTTASPRGMITDREGRPLAVSVPVNAVWADPKTIISKGGVGYNER WQALASALHLSLSTLAERVNSNPAGRFIYLARQVSPQQAEWIDKLNLPGINLREESRR FYPAGHVAANLIGFTNIDGQGIEGIEKSFNAQLTGKPGSRLVRKDKFGHVIENITEVN PVPAHELQLSIDERLQTVTEDALDNAVIWNKAESGAAVLINIPTGEILSMASYPDFNP NNREGAQLDDFRNRAISDTFEPGSTVKPLVIMTALQQGIVQPDSVIDTHPFTLDGHRI RDVGYYPELTLTGILQKSSDTGVSHLSLAMPVQKLMDTYKSFGFGVPTGLGLTGESSG LLPKRRYWSDLDRATFAFGYGLMVTPLQLAHVYATIGSFGIYRPLSITKVDPPVIGTR VMPEELVHEVEHMMESVALPGGGGTKAAVRDYRIAVKTGTAKKIGDDGKYVDKYVAYT AGVAPASNPRFALVVVINNPQNGAYYGGAVSAPVFSQIMGDVLRLENVEPDGMPADSD HLLVMHGSHVAVPGS" misc_feature complement(1933612..1935324) /locus_tag="STM1836" /note="peptidoglycan synthase FtsI; Provisional; Region: PRK15105" /db_xref="CDD:185060" regulatory complement(1935326..1935331) /regulatory_class="ribosome_binding_site" /locus_tag="STM1836" /note="putative RBS for STM1836; RegulonDB:STMS1H002007" gene complement(1935544..1935767) /gene="cspC" /locus_tag="STM1837" /db_xref="GeneID:1253356" CDS complement(1935544..1935753) /gene="cspC" /locus_tag="STM1837" /note="multicopy suppresses mukB mutants, putative regulator; cold shock-like protein CSPC. (SW:CSPC_SALTY)" /codon_start=1 /transl_table=11 /product="cold shock protein" /protein_id="NP_460793.1" /db_xref="GeneID:1253356" /translation="MAKIKGQVKWFNESKGFGFITPADGSKDVFVHFSAIQGNGFKTL AEGQNVEFEIQDGQKGPAAVNVTAI" misc_feature complement(1935547..1935753) /gene="cspC" /locus_tag="STM1837" /note="cold shock-like protein CspC; Provisional; Region: PRK10943" /db_xref="CDD:170841" misc_feature complement(order(1935577..1935579,1935664..1935666, 1935697..1935699,1935724..1935726)) /gene="cspC" /locus_tag="STM1837" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:239905" misc_feature complement(order(1935658..1935669,1935688..1935708)) /gene="cspC" /locus_tag="STM1837" /note="RNA-binding motif [active]" /db_xref="CDD:239905" regulatory complement(1935762..1935767) /regulatory_class="ribosome_binding_site" /gene="cspC" /locus_tag="STM1837" /note="putative RBS for cspC; RegulonDB:STMS1H002008" gene complement(1935766..1935926) /gene="yobF" /locus_tag="STM1838" /db_xref="GeneID:1253357" CDS complement(1935766..1935909) /gene="yobF" /locus_tag="STM1838" /note="similar to E. coli orf, hypothetical protein (AAC74894.1); Blastp hit to AAC74894.1 (47 aa), 93% identity in aa 1 - 47" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460794.1" /db_xref="GeneID:1253357" /translation="MCGIFSKEVLSKHVDVEYRFSAEPYISASSSNVSVLSMLCLRAK KTL" misc_feature complement(1935796..1935909) /gene="yobF" /locus_tag="STM1838" /note="Protein of unknown function (DUF2627); Region: DUF2527; pfam10736" /db_xref="CDD:119256" regulatory complement(1935921..1935926) /regulatory_class="ribosome_binding_site" /gene="yobF" /locus_tag="STM1838" /note="putative RBS for yobF; RegulonDB:STMS1H002009" gene complement(1936558..1936856) /locus_tag="STM1839" /db_xref="GeneID:1253358" CDS complement(1936558..1936845) /locus_tag="STM1839" /note="similar to E. coli orf, hypothetical protein (AAC74895.1); Blastp hit to AAC74895.1 (95 aa), 73% identity in aa 1 - 95" /codon_start=1 /transl_table=11 /product="putative periplasmic or exported protein" /protein_id="NP_460795.1" /db_xref="GeneID:1253358" /translation="MNDVLNSGAFSLASLIVSMVVLVVGLALWFFVNRASSRANEQIE LLEALLDQQKRQNALLRRLCEANEPEKEAEPATAASEPKEDEDIIRLVAER" misc_feature complement(1936561..1936800) /locus_tag="STM1839" /note="YebO-like protein; Region: YebO; pfam13974" /db_xref="CDD:433617" regulatory complement(1936851..1936856) /regulatory_class="ribosome_binding_site" /locus_tag="STM1839" /note="putative RBS for STM1839; RegulonDB:STMS1H002010" gene complement(1936916..1937071) /gene="yobG" /locus_tag="STM1840" /db_xref="GeneID:1253359" CDS complement(1936916..1937059) /gene="yobG" /locus_tag="STM1840" /note="similar to E. coli orf, hypothetical protein (AAC74896.1); Blastp hit to AAC74896.1 (47 aa), 85% identity in aa 1 - 47" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460796.1" /db_xref="GeneID:1253359" /translation="MKKFRWVVLGIVVVVCLLLWAQVFNIMCDQDVQFFSGICAINKF IPW" misc_feature complement(1936919..1937059) /gene="yobG" /locus_tag="STM1840" /note="PhoP/PhoQ regulator MgrB; Region: PRK10299" /db_xref="CDD:182364" regulatory complement(1937066..1937071) /regulatory_class="ribosome_binding_site" /gene="yobG" /locus_tag="STM1840" /note="putative RBS for yobG; RegulonDB:STMS1H002011" gene 1937211..1937456 /locus_tag="STM1841" /db_xref="GeneID:1253360" regulatory 1937211..1937216 /regulatory_class="ribosome_binding_site" /locus_tag="STM1841" /note="putative RBS for STM1841; RegulonDB:STMS1H002012" CDS 1937217..1937456 /locus_tag="STM1841" /codon_start=1 /transl_table=11 /product="putative outer membrane or exported" /protein_id="NP_460797.1" /db_xref="GeneID:1253360" /translation="MRLIIRAIVLFALVWIGLLMSGYGILVGSKVNAAGLGLQCHYLT ARGTSTAQYLHTNSGIIGFSDCPIFRKIATVVDNG" misc_feature 1937220..1937429 /locus_tag="STM1841" /note="YobH-like protein; Region: YobH; pfam13996" /db_xref="CDD:433635" gene complement(1937668..1938469) /gene="kdgR" /locus_tag="STM1842" /db_xref="GeneID:1253361" CDS complement(1937668..1938459) /gene="kdgR" /locus_tag="STM1842" /note="similar to E. coli putative regulator (AAC74897.1); Blastp hit to AAC74897.1 (263 aa), 96% identity in aa 1 - 263" /codon_start=1 /transl_table=11 /product="putative IclR family transcriptional repressor" /protein_id="NP_460798.1" /db_xref="GeneID:1253361" /translation="MANADLDKQPDSVSSVLKVFGILQALGEEREIGITELSQRVMMS KSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFELGARALQNVDLIRSADIQMRELSR LTKETIHLGALDEDSIVYIHKIDSMYNLRMYSRIGRRNPLYSTAIGKVLLAWRDRDEV KQILDGVEYKQSTGRTITSTEALLPLLDEVRAQGYGEDNEEQEEGLRCIGVPVFDRFG VVIAGLSISFPTLRFSEERLQEYVAMLHAAARKISEQMGYNDYPF" misc_feature complement(1937680..1938450) /gene="kdgR" /locus_tag="STM1842" /note="DNA-binding transcriptional regulator KdgR; Provisional; Region: PRK15090" /db_xref="CDD:185046" regulatory complement(1938464..1938469) /regulatory_class="ribosome_binding_site" /gene="kdgR" /locus_tag="STM1842" /note="putative RBS for kdgR; RegulonDB:STMS1H002013" gene 1938635..1940008 /locus_tag="STM1843" /db_xref="GeneID:1253362" CDS 1938635..1940008 /locus_tag="STM1843" /note="similar to E. coli putative transport protein (AAC74898.1); Blastp hit to AAC74898.1 (494 aa), 90% identity in aa 38 - 494" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_460799.1" /db_xref="GeneID:1253362" /translation="MEKTRADGLPLPQRYGAILTIIIGISMAVLDGAIANVALPTIAT DLHASPASSIWIVNAYQIAIVVSLLSLSFLGDMFGYHRIYKCGLVVFLLSSLFCALSD SLQMLTLARIAQGFGGAALMSVNTALIRLIYPQRHLGRGMGINSFIVAVSSAAGPTIA AAILSISSWKWLFLINVPLGIIALILAIRFLPANIAHDTKPRFDLPSAVMNALTFGLL ITALSGFAQGQSLTLIGAELLVLVVVGFFFVRRQLSLPVPLLPIDLLRIPLFSLSIGT SICSFCAQMLAMVSLPFYLQTVLGRSEVETGLLLTPWPLATMVMAPLAGYLIERLHAG LLGALGMVIMAAGLFALVMLPASPSDLNIIWPMILCGAGFGLFQSPNNHTIITSAPRE RSGGASGMLGTARLLGQSTGAALVALMLNQFGDSGTHLSLLAAAILAILAAVVSGLRI TQPRVQA" misc_feature 1938695..1939987 /locus_tag="STM1843" /note="Methylenomycin A resistance protein (also called MMR peptide) and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily; Region: MFS_MMR_MDR_like; cd17321" /db_xref="CDD:340879" misc_feature order(1938716..1938721,1938728..1938733,1938740..1938742, 1938836..1938838,1938986..1938991,1938995..1939003, 1939010..1939012,1939070..1939072,1939079..1939084, 1939091..1939093,1939463..1939465,1939472..1939477, 1939484..1939492,1939499..1939501,1939583..1939585, 1939595..1939597,1939751..1939756,1939766..1939768, 1939778..1939780,1939826..1939828,1939835..1939840, 1939847..1939852,1939859..1939861) /locus_tag="STM1843" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340879" gene complement(1940056..1940954) /gene="htpX" /locus_tag="STM1844" /db_xref="GeneID:1253363" CDS complement(1940056..1940937) /gene="htpX" /locus_tag="STM1844" /EC_number="3.4.24.-" /note="integral membrane protein; similar to E. coli heat shock protein, integral membrane protein (AAC74899.1); Blastp hit to AAC74899.1 (293 aa), 96% identity in aa 1 - 293" /codon_start=1 /transl_table=11 /product="heat shock protein" /protein_id="NP_460800.1" /db_xref="GeneID:1253363" /translation="MMRIALFLLTNLAVMVVFGLVLSLTGIQSSSVQGLLIMALLFGF GGSFISLLMSKWMALKSVGGEVIEQPRNERERWLMNTVATQARQAGIAMPQVAIYHAP DINAFATGARRDASLVAVSTGLLQNMSPDEAEAVIAHEISHIANGDMVTMTLIQGVVN TFVIFISRIIAQIAAGFLGGNRDEGEGSNGNPLIYFAVATVLELVFGILASIITMWFS RYREFHADAGSAKLVGREKMIAALQRLKTSYEPQEATSMMAFCINGKSKSLSELFMTH PPLDKRIEALRSGEYLK" misc_feature complement(1940068..1940937) /gene="htpX" /locus_tag="STM1844" /note="protease HtpX; Region: PRK05457" /db_xref="CDD:235478" regulatory complement(1940949..1940954) /regulatory_class="ribosome_binding_site" /gene="htpX" /locus_tag="STM1844" /note="putative RBS for htpX; RegulonDB:STMS1H002014" gene complement(1941131..1943197) /gene="prc" /locus_tag="STM1845" /db_xref="GeneID:1253364" CDS complement(1941131..1943179) /gene="prc" /locus_tag="STM1845" /EC_number="3.4.21.-" /note="tail-specific protease. (SW:PRC_SALTY)" /codon_start=1 /transl_table=11 /product="carboxy-terminal protease for penicillin-binding protein 3" /protein_id="NP_460801.1" /db_xref="GeneID:1253364" /translation="MNTFFRLTALAGLLALAGQSFAVEDITRADQIPVLKEETQHATV SERVTSRFTRSHYRQFDLDEAFSAKIFDRYLNLLDYSHNVLLASDVEQFAKKKTVLGD ELRTGKLDVFYDLYNLAQKRRFERYQYALKVLERPMDFTGNDTFNLDRSKAPWPKDEA ELNALWDGKVKFDELSLKLTGKSDKEIRETLTRRYKFAIRRLAQTNSEDVFSLAMTAF AREIDPHTNYLSPRNTEQFNTEMSLSLEGIGAVLQMDDDYTVINSLVAGGPAAKSKSI SVGDRIVGVGQAGKPMVDVIGWRLDDVVALIKGPKGSKVRLEILPAGKGTKTRIITLT RERIRLEDRAVKMSVKTVGKEKVGVLDIPGFYVGLTDDVKVQLQKLEKQNVNSIVIDL RSNGGGALTEAVSLSGLFIPSGPIVQVRDNNGKVREDSDTDGVVYYKGPLVVLVDRFS ASASEIFAAAMQDYGRALIVGEPTFGKGTVQQYRSLNRIYDQMLRPEWPALGSVQYTI QKFYRVNGGSTQRKGVTPDIIMPTGNEETETGEKFEDNALPWDSIDAAKYVKSDDLAP FGPELLKEHNARIAKDPEFQYIMKDIARFNAMKDKRNIVSLNYAQREKENNEEDALRL ARINDRFKREGKPLLKKLDDLPKDYQEPDPYLDETVKIALDLAHLEKEKPAEQAAANK " misc_feature complement(1941158..1943173) /gene="prc" /locus_tag="STM1845" /note="carboxy terminal-processing peptidase; Region: PRK11186" /db_xref="CDD:236873" regulatory complement(1943192..1943197) /regulatory_class="ribosome_binding_site" /gene="prc" /locus_tag="STM1845" /note="putative RBS for prc; RegulonDB:STMS1H002015" gene complement(1943199..1943896) /gene="proQ" /locus_tag="STM1846" /db_xref="GeneID:1253365" CDS complement(1943199..1943885) /gene="proQ" /locus_tag="STM1846" /note="similar to E. coli orf, hypothetical protein (AAC74901.1); Blastp hit to AAC74901.1 (39 aa), 94% identity in aa 1 - 39" /codon_start=1 /transl_table=11 /product="activator of proP" /protein_id="NP_460802.1" /db_xref="GeneID:1253365" /translation="MENQPKLNSSKEVIAFLAERFPHCFSAEGEARPLKIGIFQDLVE RVGGEMNLSKTQLRSALRLYTSSWRYLYGVKPGATRVDLDGNPCGELEEQHVEHARKQ LEEAKARVQAQRAEQQAKKREAAAAAGEKEDAPRRERKPRPVARRKEGAERKPRADKP TTKAPRAPREEKHTPVSDISVLTVGQSLKVKAGNNAMDATVLEITKDGVRVQLNSGMS LIVRAEHLVF" misc_feature complement(1943202..1943885) /gene="proQ" /locus_tag="STM1846" /note="ProP expression regulator; Provisional; Region: PRK04950" /db_xref="CDD:235322" regulatory complement(1943891..1943896) /regulatory_class="ribosome_binding_site" /gene="proQ" /locus_tag="STM1846" /note="putative RBS for proQ; RegulonDB:STMS1H002016" gene complement(1943983..1944567) /gene="yebR" /locus_tag="STM1847" /db_xref="GeneID:1253366" CDS complement(1943983..1944567) /gene="yebR" /locus_tag="STM1847" /note="similar to E. coli orf, hypothetical protein (AAC74902.1); Blastp hit to AAC74902.1 (183 aa), 83% identity in aa 11 - 183" /codon_start=1 /transl_table=11 /product="putative GAF domain-containing protein" /protein_id="NP_460803.1" /db_xref="GeneID:1253366" /translation="MTGIILSKNAFNAYFNSLCLGVRPRSDYIMSKTELYAALNRDFQ SLMAGETSFLATLANTSALLFERLTEVNWAGFYLLEGDTLVLGPFQGRIACVRIPVGR GVCGAAVAQNKVQRIDDVHAFDGHIACDAASNAEIVLPVTVGERIIGVLDIDSTAFGR FTEEDEHGLRTLVAQLETVLATTDYKKFFASVAG" misc_feature complement(1944022..1944480) /gene="yebR" /locus_tag="STM1847" /note="GAF domain-containing protein, putative methionine-R-sulfoxide reductase [Defense mechanisms, Signal transduction mechanisms]; Region: MsrC; COG1956" /db_xref="CDD:441559" gene 1944601..1945892 /gene="yebS" /locus_tag="STM1848" /db_xref="GeneID:1253367" regulatory 1944601..1944606 /regulatory_class="ribosome_binding_site" /gene="yebS" /locus_tag="STM1848" /note="putative RBS for yebS; RegulonDB:STMS1H002017" CDS 1944609..1945892 /gene="yebS" /locus_tag="STM1848" /note="similar to E. coli orf, hypothetical protein (AAC74903.1); Blastp hit to AAC74903.1 (427 aa), 85% identity in aa 1 - 427" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460804.1" /db_xref="GeneID:1253367" /translation="MALNTSHVTPTKKLTIRSISEALPRSHYQRCPECDMLFSLPEMS AHQSAYCPRCQAKIRDGRDWSLTRLTAMAVTMLLLMPFAWSEPLLHIYLLGVRIDANV MHGIWQMTQQGDPLTAAMVLFCVVGAPLILVFSIAYLWFGSLLGMNLRPVLLMLEKLK EWVMLDIYLVGIGVASIKVQDYAFLQPGIGLLAFVSLVVLSILTMIHLNVEQLWERFY PQRPAQRADERLRVCLGCHFSGYPDAKGRCPRCHIPLRLRRKQSIQKCWAALLASIVF LLPANLLPISVIYINGGRQEDTILSGIMSLASSNIAVAAVVFIASILVPFTKVIVMFT LLLSIHFKCQQGLRTRILLLRLVTWIGRWSMLDLFVISLTMSLINRDQILAFTMGPAA FYFGAAVILTILAVEWLDSRLLWDAHESGNARFED" misc_feature 1944654..1945859 /gene="yebS" /locus_tag="STM1848" /note="integral membrane protein, PqiA family; Region: pqiA_fam; TIGR00155" /db_xref="CDD:272933" gene 1945855..1948494 /locus_tag="STM1849" /db_xref="GeneID:1253368" CDS 1945855..1948494 /locus_tag="STM1849" /note="similar to E. coli orf, hypothetical protein (AAC74904.1); Blastp hit to AAC74904.1 (879 aa), 90% identity in aa 1 - 879" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460805.1" /db_xref="GeneID:1253368" /translation="MHMSQETPASKTEAQIKTKRRISPFWLLPLIALMIAGWLVWDSY QDRGNSVTIDFMSADGIVPGRTPVRYQGVEVGTVEDVSLSKDLRKIEVRVSIKSDMED ALREETQFWLVTPKASLAGVSGLDALVGGNYIGMMPGKGKPRDHFVALDTQPKYRLSN GDLMIHLHAPDLGSLNSGSLVYFRKIPVGRVYDYSINPNKQGVTIDVLIERRFTDLVK KGSRFWNVSGIDADLSLSGAKVKLESLAALVNGAIAFDSPDNSKPAAQDDTFGLYKDL AHSQRGVIVKLELPSGDGLKAESTPLMYQGLEVGELSKLTLNPGGKVTGEMTVDPSVV PLMRENTRIELRNPKLSLSDANISSLLTGKTFELVPGDGEPRSEFVVVPGEKALLHEA NALTLTLTAPESYGIEPGQPLILHGVKIGQVIERNLSSKGVSFIVAIEPQHRDLVQGD SKFVVNSRVDVKVGLDGVEFLGASASEWIDGGIRILPGTSGKMKSTYPLYANLEKALE NSLSDLPTTTLTLTAETLPDVQAGSVVLYRKFEVGEVITVRPRANTFDIDLHIKPEYR HLLTSNSVFWAEGGAKVQLNGSGLTVQASPLSRALKGAISFDNLSGASASRRKGDKRI LYASETSARAVGGQITLHAFDAGKLAEGMPIRYLGIDIGQIQTLELITARNEVQAKAV LYPEYVQTFARAGTRFSVITPQISAAGVEHLDTILQPYINVEPGRGAARRDFELQEAT ITDSRYLDGLSIVVEAPEAGSLNIGTPVLFRGIEVGTVTGMSLGSLSDRVMITLRISK RYQYLVRNNSVFWLASGYSLDFGLTGGVVKTGTFNQFIRGGIAFATPPGTPLAPKAQA GKHFLLQESEPKEWREWGTALPR" misc_feature 1945861..1947378 /locus_tag="STM1849" /note="Intermembrane transporter PqiABC subunit PqiB [Cell wall/membrane/envelope biogenesis]; Region: PqiB; COG3008" /db_xref="CDD:442245" misc_feature 1947760..>1948452 /locus_tag="STM1849" /note="Intermembrane transporter PqiABC subunit PqiB [Cell wall/membrane/envelope biogenesis]; Region: PqiB; COG3008" /db_xref="CDD:442245" gene 1948558..1950011 /gene="yebU" /locus_tag="STM1850" /db_xref="GeneID:1253369" regulatory 1948558..1948563 /regulatory_class="ribosome_binding_site" /gene="yebU" /locus_tag="STM1850" /note="putative RBS for yebU; RegulonDB:STMS1H002018" CDS 1948572..1950011 /gene="yebU" /locus_tag="STM1850" /note="similar to E. coli putative nucleolar proteins (AAC74905.1); Blastp hit to AAC74905.1 (481 aa), 85% identity in aa 3 - 481" /codon_start=1 /transl_table=11 /product="putative rRNA methyltransferase" /protein_id="NP_460806.1" /db_xref="GeneID:1253369" /translation="MAQHAVYFPDAFLTQMREAMPSTLSFDEFISACQRPLRRSIRIN TLKISVADFLALIAPYGWSLTPIPWCHEGFWIERDDEEALPLGSTAEHLSGLFYIQEA SSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGNRGAILANEFSASRVKVLHA NISRCGIANTALTHFDGRVFGAALPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESN LDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQENEAVCLWLKETYADAVEFLPLGD LFPDADRALTPEGFLHVFPQIYDCEGFFVARLRKMSSLPAMPAPGYKVGAFPFTPLKG REALHVTQAANAVGLLWDENLHLWQREKEVWLFPAEIESLIGKVRFSRLGIKLAESHN KGYRWQHEATIALACPTHAHAFELSVQEAEEWYRGRDIYPQTPPAADDVLVTFQHQPL GLAKRIGARIKNSYPRELVRDGKLFTGNS" misc_feature 1948587..1949993 /gene="yebU" /locus_tag="STM1850" /note="rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed; Region: yebU; PRK11933" /db_xref="CDD:183387" gene 1950114..1950365 /locus_tag="STM1851" /db_xref="GeneID:1253370" regulatory 1950114..1950119 /regulatory_class="ribosome_binding_site" /locus_tag="STM1851" /note="putative RBS for STM1851; RegulonDB:STMS1H002019" CDS 1950126..1950365 /locus_tag="STM1851" /note="similar to E. coli orf, hypothetical protein (AAC74906.1); Blastp hit to AAC74906.1 (83 aa), 88% identity in aa 6 - 83" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460807.1" /db_xref="GeneID:1253370" /translation="MMKTSVRIGAFEIDDAELHGESPGERTLTIPCKSDPDLCMQLDA WDAETSVPAILNGEHSVLFRTHYDPKSDAWVMRLA" misc_feature 1950126..1950359 /locus_tag="STM1851" /note="Protein of unknown function (DUF1480); Region: DUF1480; pfam07351" /db_xref="CDD:429421" gene 1950467..1950667 /gene="yebW" /locus_tag="STM1852" /db_xref="GeneID:1253371" regulatory 1950467..1950472 /regulatory_class="ribosome_binding_site" /gene="yebW" /locus_tag="STM1852" /note="putative RBS for yebW; RegulonDB:STMS1H002020" CDS 1950476..1950667 /gene="yebW" /locus_tag="STM1852" /note="similar to E. coli orf, hypothetical protein (AAC74907.1); Blastp hit to AAC74907.1 (91 aa), 87% identity in aa 29 - 91" /codon_start=1 /transl_table=11 /product="putative inner membrane lipoprotein" /protein_id="NP_460808.1" /db_xref="GeneID:1253371" /translation="MFALVLFVCYLDGGCEDIVVDIYDTEQHCLYSMDDQRIRHGGCF PVEDFIDGFWRPAQQYSDF" misc_feature 1950476..1950646 /gene="yebW" /locus_tag="STM1852" /note="Protein of unknown function (DUF1482); Region: DUF1482; pfam07358" /db_xref="CDD:369331" gene complement(1950686..1951346) /gene="prpA" /locus_tag="STM1853" /db_xref="GeneID:1253372" CDS complement(1950686..1951336) /gene="prpA" /locus_tag="STM1853" /EC_number="3.1.3.16" /note="similar to E. coli protein phosphatase 1 modulates phosphoproteins, signals protein misfolding (AAC74908.1); Blastp hit to AAC74908.1 (219 aa), 63% identity in aa 2 - 219" /codon_start=1 /transl_table=11 /product="serine/threonine protein phosphatase" /protein_id="NP_460809.1" /db_xref="GeneID:1253372" /translation="MMRPEEIYQRIEAKNWRHVWVVGDIHGCFSMLMKRLRECRFDPQ QDLLVSVGDLIDRGPDSLGCLALLRESWMTAVRGNHEQMALDARASSQSTLWLMNGGD WFTRLTAEHAAQAEALFILCQRLPWILEVRCRHSTHVIAHADYPASTYQWQKKVDLHQ VLWSRERLINKRGGISGADHFWFGHTPLRRRMDFANVHYIDTGAVFGGQLTLARIQ" misc_feature complement(1950689..1951336) /gene="prpA" /locus_tag="STM1853" /note="protein-serine/threonine phosphatase; Region: pphA; PRK11439" /db_xref="CDD:236911" misc_feature complement(order(1950782..1950784,1950911..1950913, 1951097..1951102,1951178..1951180,1951259..1951261, 1951265..1951267)) /gene="prpA" /locus_tag="STM1853" /note="active site" /db_xref="CDD:277317" misc_feature complement(order(1950782..1950784,1950911..1950913, 1951100..1951102,1951178..1951180,1951259..1951261, 1951265..1951267)) /gene="prpA" /locus_tag="STM1853" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:277317" regulatory complement(1951341..1951346) /regulatory_class="ribosome_binding_site" /gene="prpA" /locus_tag="STM1853" /note="putative RBS for prpA; RegulonDB:STMS1H002021" gene complement(1951560..1951732) /locus_tag="STM1854" /db_xref="GeneID:1253373" CDS complement(1951560..1951724) /locus_tag="STM1854" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460810.1" /db_xref="GeneID:1253373" /translation="MPPLKKIVLRLFVGAMVATVTTPALALVCLEDHSAKECAISCAE AMWFMFPICF" regulatory complement(1951727..1951732) /regulatory_class="ribosome_binding_site" /locus_tag="STM1854" /note="putative RBS for STM1854; RegulonDB:STMS1H002022" gene complement(1952009..1952738) /gene="sopE2" /locus_tag="STM1855" /db_xref="GeneID:1253374" CDS complement(1952009..1952731) /gene="sopE2" /locus_tag="STM1855" /note="SopE2 (gi|9651642)" /codon_start=1 /transl_table=11 /product="TypeIII-secreted protein effector: invasion-associated protein" /protein_id="NP_460811.1" /db_xref="GeneID:1253374" /translation="MTNITLSTQHYRIHRSDVEPVKEKTTEKDIFAKSITAVRNSFIS LSTSLSDRFSLHQQTDIPTTHFHRGNASEGRAVLTSKTVKDFMLQKLNSLDIKGNASK DPAYARQTCEAILSAVYSNNKDQCCKLLISKGVSITPFLKEIGEAAQNAGLPGEIKNG VFTPGGAGANPFVVPLIASASIKYPHMFINHNQQVSFKAYAEKIVMKEVTPLFNKGTM PTPQQFQLTIENIANKYLQNAS" misc_feature complement(1952012..1952731) /gene="sopE2" /locus_tag="STM1855" /note="type III secretion system guanine nucleotide exchange factor SopE2; Region: PRK15280" /db_xref="CDD:185182" regulatory complement(1952733..1952738) /regulatory_class="ribosome_binding_site" /gene="sopE2" /locus_tag="STM1855" /note="putative RBS for sopE2; RegulonDB:STMS1H002023" gene 1953404..1953810 /locus_tag="STM1856" /db_xref="GeneID:1253375" regulatory 1953404..1953409 /regulatory_class="ribosome_binding_site" /locus_tag="STM1856" /note="putative RBS for STM1856; RegulonDB:STMS1H002024" CDS 1953415..1953810 /locus_tag="STM1856" /note="similar to E. coli orf, hypothetical protein (AAC74245.1); Blastp hit to AAC74245.1 (134 aa), 40% identity in aa 1 - 127" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460812.1" /db_xref="GeneID:1253375" /translation="MELQLMLNHFFERVRKDANFNAFLIDLEYNNIAYYIYFVATGNV KIITHAGHFISIKSNRKLIKVNSTPNTQLIKLISAKHFSGEHSYEKYCTDLATAGVFK WIVELNQKTRQYWSKDNQLLYIENVVMPL" misc_feature 1953436..1953792 /locus_tag="STM1856" /note="Protein of unknown function (DUF1398); Region: DUF1398; pfam07166" /db_xref="CDD:429329" gene complement(1955004..1955423) /locus_tag="STM1857" /db_xref="GeneID:1253376" CDS complement(1955004..1955423) /locus_tag="STM1857" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_460813.1" /db_xref="GeneID:1253376" /translation="MDIQITHQVTEFDKEELLTGLRSYNAQFVDFSKNGQLGVYCRNE SGEMVGGLIADRKGPWLCIDYLWVSESARNCGLGSKLMAMAEKEGLRKGCVHGLVDTF SFQALPFYEKQGYILQMSLPDFPKVGSQRHYLIKPGL" misc_feature complement(1955079..>1955312) /locus_tag="STM1857" /note="Acetyltransferase (GNAT) family; Region: Acetyltransf_1; pfam00583" /db_xref="CDD:395465" misc_feature complement(order(1955187..1955192,1955220..1955228)) /locus_tag="STM1857" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 1955787..1956062 /locus_tag="STM1858" /db_xref="GeneID:1253377" regulatory 1955787..1955792 /regulatory_class="ribosome_binding_site" /locus_tag="STM1858" /note="putative RBS for STM1858; RegulonDB:STMS1H002025" CDS 1955793..1956062 /locus_tag="STM1858" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460814.1" /db_xref="GeneID:1253377" /translation="MKFDNTWNQGVWFALRSATGRPSPQPFSVEDLPALGEEYRRIMK IISAVYTSKKTLSKRWFASAELLNLYLTKYGLSCLNCSRKKTTAC" gene 1956228..1956368 /locus_tag="STM1859" /db_xref="GeneID:1253378" CDS 1956228..1956368 /locus_tag="STM1859" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460815.3" /db_xref="GeneID:1253378" /translation="MFRSKRTLPRNLQPYTGQASTEELHTDLNNMRYTELYSIQQMVL QL" gene complement(1956851..1957714) /locus_tag="STM1860" /db_xref="GeneID:2673760" CDS complement(1956851..1957708) /locus_tag="STM1860" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_448275.1" /db_xref="GeneID:2673760" /translation="MDEKKLKALAVELAKGLKTEADLNSFSRMLAKLTVETVLNAELA DHPGYEKNAPKTGSNTRNGYSSKTVLCDDGEIELNTPRDRENTFEPQLLKKHQTRITQ MDSQILSLYAKGMTTREIVATFKEMYDANVSPSLISKVTDAVKEQVTERQNRQPDALY PIVYMDCIVVKVRQNGSVINKAVFLALGINTEGQKELLGMWLAENEGEKFWLSVLTEL KTRGVQDILIACVDGLKGFPDAINSVFPQPHIQLCIIHMVRNSLKYVAWKGYKVATSG LRLRPKRRH" misc_feature complement(<1956875..1957702) /locus_tag="STM1860" /note="Transposase (or an inactivated derivative) [Mobilome: prophages, transposons]; Region: IS285; COG3328" /db_xref="CDD:442557" regulatory complement(1957709..1957714) /regulatory_class="ribosome_binding_site" /locus_tag="STM1860" /note="putative RBS for STM1860; RegulonDB:STMS1H002026" gene 1957832..1958200 /locus_tag="STM1861" /db_xref="GeneID:1253380" CDS 1957832..1958200 /locus_tag="STM1861" /note="similar to E. coli prophage e14 integrase (AAC74224.1); Blastp hit to AAC74224.1 (375 aa), 43% identity in aa 253 - 366" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_448276.1" /db_xref="GeneID:1253380" /translation="MKIALPLSLNLPSMGLRLSTVIERCRLVSRSEYLISAGIRKNSP NGSIHPNSLTKKFVAARKLTGINFSENPPPFHEIRSLSGRLYKDAYGEGFAQKLLGHT SENTTKLYLDERDNKAYVML" misc_feature <1957835..1958182 /locus_tag="STM1861" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain; Region: DNA_BRE_C; cl00213" /db_xref="CDD:469662" misc_feature order(1958057..1958059,1958066..1958068,1958132..1958134, 1958159..1958161) /locus_tag="STM1861" /note="active site" /db_xref="CDD:271175" gene 1959497..1960418 /gene="pagO" /locus_tag="STM1862" /db_xref="GeneID:1253381" regulatory 1959497..1959502 /regulatory_class="ribosome_binding_site" /gene="pagO" /locus_tag="STM1862" /note="putative RBS for pagO; RegulonDB:STMS1H002027" CDS 1959504..1960418 /gene="pagO" /locus_tag="STM1862" /note="predicted integral membrane protein; PAGO protein. (SW:PAGO_SALTY)" /codon_start=1 /transl_table=11 /product="PhoPQ-activated protein" /protein_id="NP_460818.1" /db_xref="GeneID:1253381" /translation="MRKVSISILFMLVSLTWGTTWLAMRIAVETIPPVFATGMRFMFA APFLIIIAWLRKKTLLFPPGQRLFQFVICIFYFCIPFSLMIYGETYVNSGLAAIIFAN MPVAVLIASVLFLNEKAKLMQIAGLTIAITALTGILLEETNTSTESHWQGITALISAV LIHAIIYTQCKKRSCTVSVITFNALPCLLAGLILSATGWFFERPQVSTFSVHSILATL YLGAFAGVFGILCYFALQQKANAFQASLVFLIFPLIAVSLEDYIYGYAISTHSMLLII PLVIGIFLTLVARNLPVTSRCRDNSSQK" misc_feature 1959525..1960370 /gene="pagO" /locus_tag="STM1862" /note="Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]; Region: RhaT; COG0697" /db_xref="CDD:440461" gene 1960544..1960709 /locus_tag="STM1863" /db_xref="GeneID:1253382" regulatory 1960544..1960549 /regulatory_class="ribosome_binding_site" /locus_tag="STM1863" /note="putative RBS for STM1863; RegulonDB:STMS1H002028" CDS 1960551..1960709 /locus_tag="STM1863" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460819.1" /db_xref="GeneID:1253382" /translation="MFMFLPFLLALSVAMGAINRKDKVSYILWAVLLIVTILSFIHHM TNSLTLSF" misc_feature 1960557..1960706 /locus_tag="STM1863" /note="Family of unknown function (DUF5993); Region: DUF5993; pfam19455" /db_xref="CDD:466092" gene 1960712..1961333 /locus_tag="STM1864" /db_xref="GeneID:1253383" regulatory 1960712..1960717 /regulatory_class="ribosome_binding_site" /locus_tag="STM1864" /note="putative RBS for STM1864; RegulonDB:STMS1H002029" CDS 1960719..1961333 /locus_tag="STM1864" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460820.1" /db_xref="GeneID:1253383" /translation="MKTHHHPTTFVHLINQVGLLGICVALVVAFYYQLVRHELPCPIC LLQRAGLIIAGFGFLFNLCFGLRGIHYGMVIIGSILTGVMASRQICLHIMPGDTGYGS AFFGLHFYTWTLITSILIIIAVAVILAISSMNVAFRSLNINPDLFSIVGWVFLLLITA NLISTVLECGGGECAANPVTYKLLSKQDIAFLKTGLLTRTVLRL" misc_feature 1960773..>1961012 /locus_tag="STM1864" /note="disulfide bond formation protein B; Provisional; Region: PRK02110; cl00649" /db_xref="CDD:469857" gene complement(1961660..1961789) /locus_tag="STM1865" /db_xref="GeneID:1253384" CDS complement(1961660..1961785) /locus_tag="STM1865" /note="similar to E. coli inversion of adjacent DNA; at locus of e14 element (AAC74242.1); Blastp hit to AAC74242.1 (184 aa), 78% identity in aa 143 - 180" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_448280.1" /db_xref="GeneID:1253384" /translation="MTPEQWAQAGCLIRAGVPRQQVAIIYDAGLSTLYRKFPVLG" misc_feature complement(1961672..1961782) /locus_tag="STM1865" /note="helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family; Region: HTH_CRP; cl46859" /db_xref="CDD:481199" regulatory complement(1961784..1961789) /regulatory_class="ribosome_binding_site" /locus_tag="STM1865" /note="putative RBS for STM1865; RegulonDB:STMS1H002030" gene complement(1962086..1962268) /locus_tag="STM1866" /note="pseudogene; in-frame stop following codon 23" /pseudo /db_xref="GeneID:1253385" gene 1963169..1963376 /gene="pagK" /locus_tag="STM1867" /db_xref="GeneID:1253386" regulatory 1963169..1963174 /regulatory_class="ribosome_binding_site" /gene="pagK" /locus_tag="STM1867" /note="putative RBS for pagK; RegulonDB:STMS1H002032" CDS 1963176..1963376 /gene="pagK" /locus_tag="STM1867" /note="PagK (gi|2582047)" /codon_start=1 /transl_table=11 /product="PhoPQ-activated protein" /protein_id="NP_460822.1" /db_xref="GeneID:1253386" /translation="MKHVKSVFLAMVLILPSSLYPALTIAADSQDHKKEETIKPMPQK WCNLWPAGIPFPEDWFKMCRGY" misc_feature 1963176..1963367 /gene="pagK" /locus_tag="STM1867" /note="Phage-encoded virulence factor; Region: PAGK; pfam15284" /db_xref="CDD:317659" gene complement(1963473..1964361) /gene="mig-3" /locus_tag="STM1868" /db_xref="GeneID:1253387" CDS complement(1963473..1964354) /gene="mig-3" /locus_tag="STM1868" /note="phage tail assembly protein (gi|2460256)" /codon_start=1 /transl_table=11 /product="phage-tail assembly protein-like protein" /protein_id="NP_460823.1" /db_xref="GeneID:1253387" /translation="MYIGPHGHVVIVDADGNAETFGLMDGGVDAAITAYFGSQLQERV QQNIIREYLGEQPVGTAFVIETGNSKHPWLVPAPTMRVPLIIDGTDAVYNATRAALLA IFQHNKSAGEDRKITSVALPAMGAGCGQVPPGQRRPANCTDIAPPDIPSSHIAVFDAE TQTWSLQEDHRGETVYDTTTGNQVYISDLGPLPENVTSVSPGGGYKKWDSKAQVWMND EAAEAAARLREAEGTKNRLLQIASEKIAPLQDAVDLDEATNKEKASLLAWRKYRVQVN RVDTLKPVWPEKPASSL" misc_feature complement(1963956..>1964303) /gene="mig-3" /locus_tag="STM1868" /note="macrodomain superfamily; Region: Macro_SF; cl00019" /db_xref="CDD:469581" misc_feature complement(order(1963968..1963991,1964118..1964120, 1964262..1964264,1964268..1964270)) /gene="mig-3" /locus_tag="STM1868" /note="putative ADP-ribose binding site [chemical binding]; other site" /db_xref="CDD:394871" misc_feature complement(1963485..1963844) /gene="mig-3" /locus_tag="STM1868" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; pfam02413" /db_xref="CDD:426761" regulatory complement(1964356..1964361) /regulatory_class="ribosome_binding_site" /gene="mig-3" /locus_tag="STM1868" /note="putative RBS for mig-3; RegulonDB:STMS1H002033" gene 1965080..1965247 /locus_tag="STM1868A" /db_xref="GeneID:1253388" CDS 1965080..1965247 /locus_tag="STM1868A" /codon_start=1 /transl_table=11 /product="lytic enzyme" /protein_id="NP_460824.1" /db_xref="GeneID:1253388" /translation="MKNIITIIVAIIIVFYAGMWSQKFLMEDECLDSGGSYNENGICN IAGSHQDVPPK" gene complement(1965504..1966048) /locus_tag="STM1869" /db_xref="GeneID:1253389" CDS complement(1965504..1966037) /locus_tag="STM1869" /note="similar to E. coli orf, hypothetical protein (AAC74626.1); Blastp hit to AAC74626.1 (165 aa), 67% identity in aa 6 - 163" /codon_start=1 /transl_table=11 /product="phage-tail assembly protein-like protein" /protein_id="NP_460825.1" /db_xref="GeneID:1253389" /translation="MNLLSALLKRYWLQLVFILLMAGAFIAGNVWSDRGWQKKWADRD SAESSQEVNAQTAARIIEQGRVIARDEAVKDAQAQAAKSAATAAGLSATVSQLRTEAK KLATRLDAAKHTANLAAAVRSKTTNADARMLANMLGDIAEAAKHYAGIADERYRAGMT CERVYDSVRESNNYRRH" misc_feature complement(1965528..1966004) /locus_tag="STM1869" /note="Protein of unknown function (DUF2514); Region: DUF2514; pfam10721" /db_xref="CDD:431455" regulatory complement(1966043..1966048) /regulatory_class="ribosome_binding_site" /locus_tag="STM1869" /note="putative RBS for STM1869; RegulonDB:STMS1H002034" gene complement(1966091..1966378) /locus_tag="STM1869A" /db_xref="GeneID:1253390" CDS complement(1966091..1966378) /locus_tag="STM1869A" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_460826.1" /db_xref="GeneID:1253390" /translation="MGCWGVIRHIFVPVRIANAMNGKKAFAPRSAKIRITGLENYTRC GVALKLDLVANPGQLELERHAARSAAWLFVTKGCLKYSGDLVRVTQIINGG" misc_feature complement(1966094..>1966282) /locus_tag="STM1869A" /note="Chitinase class I; Region: Glyco_hydro_19; cl46694" /db_xref="CDD:481034" gene 1966507..1967005 /locus_tag="STM1870" /db_xref="GeneID:1253391" regulatory 1966507..1966512 /regulatory_class="ribosome_binding_site" /locus_tag="STM1870" /note="putative RBS for STM1870; RegulonDB:STMS1H002035" CDS 1966511..1967005 /locus_tag="STM1870" /note="similar to E. coli exonuclease VIII, ds DNA exonuclease, 5' --> 3' specific (AAC74432.1); Blastp hit to AAC74432.1 (866 aa), 52% identity in aa 406 - 521, 20% identity in aa 543 - 585" /codon_start=1 /transl_table=11 /product="recE-like protein" /protein_id="NP_460827.1" /db_xref="GeneID:1253391" /translation="MEQDTTEHHPDPQPLENEPPVSQTEAGYQKIRAELHEARKNIPP KNPVDVGKQLAAARGEYVEDISDPNDPRWVHNNYSASNQGEKEEVVPEGKQPAAEPEA VTRNADGTFDVSALFLPPSNQTEKTEARTERDGETPKESNQQETAGDTGQEITTDGGS GTTS" misc_feature <1966511..>1966996 /locus_tag="STM1870" /note="exodeoxyribonuclease VIII; Region: PRK09709" /db_xref="CDD:236615" gene 1967023..1967919 /locus_tag="STM1871" /db_xref="GeneID:1253392" CDS 1967023..1967919 /locus_tag="STM1871" /note="similar to E. coli prophage e14 integrase (AAC74224.1); Blastp hit to AAC74224.1 (375 aa), 39% identity in aa 78 - 366" /codon_start=1 /transl_table=11 /product="putative phage integrase protein" /protein_id="NP_448287.1" /db_xref="GeneID:1253392" /translation="MALIEKLKGTDSFTVSAWIDRYEVLLQRRNLSVNTYKIRSNQLA TVREKMGEIILAEVTTRHIAKFLESWITEGKNTMAGAMRSVLSDMFREAIVEGHIVKN PVEATRIPEIKVARERLQLETYNATRAAAEHMPAWFPLAMDLALVTGQRREDIVNMKF SDVFDNRLYVTQIKTGMKIAIPLSLTLRATGLRLGTVIDRCRLVSRTDFMISAGIRKN SPTGNIHPDGLTKTFVKARKASGVNFSNNPPTFHEIRSLAGRLYKNEHGEVFAQKLLG HTSENTTKLYLDERDNKAYVML" misc_feature 1967386..1967901 /locus_tag="STM1871" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain; Region: DNA_BRE_C; cl00213" /db_xref="CDD:469662" misc_feature order(1967431..1967433,1967473..1967478,1967704..1967706, 1967710..1967712,1967776..1967778,1967878..1967880) /locus_tag="STM1871" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:271175" misc_feature order(1967473..1967475,1967776..1967778,1967785..1967787, 1967851..1967853,1967878..1967880) /locus_tag="STM1871" /note="active site" /db_xref="CDD:271175" gene complement(1968116..1968239) /locus_tag="STM1872" /db_xref="GeneID:1253393" CDS complement(1968116..1968235) /locus_tag="STM1872" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460829.1" /db_xref="GeneID:1253393" /translation="MITDKTPGFFNHLRRKLENLASSSILKGQGDLACINANF" regulatory complement(1968234..1968239) /regulatory_class="ribosome_binding_site" /locus_tag="STM1872" /note="putative RBS for STM1872; RegulonDB:STMS1H002036" gene complement(1968293..1968663) /locus_tag="STM1873" /db_xref="GeneID:1253394" CDS complement(1968293..1968646) /locus_tag="STM1873" /note="similar to E. coli orf, hypothetical protein (AAC74909.1); Blastp hit to AAC74909.1 (113 aa), 82% identity in aa 2 - 113" /codon_start=1 /transl_table=11 /product="putative periplasmic or exported protein" /protein_id="NP_460830.1" /db_xref="GeneID:1253394" /translation="MKKILLPALLLATSGVALAAPQVITVSRFEVGKDKWAFNREEVM LTCRPGQALYVINPSTLVQYPLNAIAEQQVAEGKTRAQPIAVIQIDNPAKPGEKMSLA PFIERAQKLCDPSNS" misc_feature complement(1968311..1968574) /locus_tag="STM1873" /note="Protein of unknown function (DUF2511); Region: DUF2511; pfam10709" /db_xref="CDD:431451" regulatory complement(1968658..1968663) /regulatory_class="ribosome_binding_site" /locus_tag="STM1873" /note="putative RBS for STM1873; RegulonDB:STMS1H002037" gene complement(1968663..1969547) /locus_tag="STM1874" /db_xref="GeneID:1253395" CDS complement(1968663..1969538) /locus_tag="STM1874" /note="similar to E. coli putative resistance protein (AAC74910.1); Blastp hit to AAC74910.1 (290 aa), 64% identity in aa 1 - 290" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460831.1" /db_xref="GeneID:1253395" /translation="MMLTFVWITLRFIHFASVMLVYGCALYGAWLAPASIRRLMTRRF LHLQQHAAAWSVISAAFMLAVQGGLMGGGWPDVFFVSVWGAVLQTRFGAVWIWQIILA LVTLAVVVIAPVKMQRRLLILTVAQFILLAGVGHATMRDGVAGTLQQINHALHLLCAA AWFGGLLPVVYCMRMAQGRWRQHAISAMMRFSRYGHFFVAGVLLTGIGNTLFITGFTA IWQTTYGQLLLLKCALVVLMVAIALTNRYVLVPRMRQENPRTDLWFVRMTQIEWGVGG IVLAIVSLFATLEPF" misc_feature complement(1968666..1969529) /locus_tag="STM1874" /note="Putative copper export protein [Inorganic ion transport and metabolism]; Region: PcoD; cl42370" /db_xref="CDD:478162" gene complement(1969539..1969927) /gene="yobA" /locus_tag="STM1875" /db_xref="GeneID:1253396" CDS complement(1969539..1969913) /gene="yobA" /locus_tag="STM1875" /note="similar to E. coli orf, hypothetical protein (AAC74911.1); Blastp hit to AAC74911.1 (124 aa), 74% identity in aa 1 - 124" /codon_start=1 /transl_table=11 /product="similar Cu resistance protein CopC" /protein_id="NP_460832.1" /db_xref="GeneID:1253396" /translation="MASSAPSRRLALLLLASTFATPAAWAHAHLTHQYPAANAAVTAS PQALTLNFSEGIEPGFSGATITGPQQELIKTRPAKRNEQDKTQLIIPLEQPLKSGAYT VDWHVVSVDGHKTKGKYTFSVK" misc_feature complement(1969542..1969913) /gene="yobA" /locus_tag="STM1875" /note="CopC domain-containing protein YobA; Region: PRK10301" /db_xref="CDD:182365" regulatory complement(1969542..1969547) /regulatory_class="ribosome_binding_site" /gene="yobA" /locus_tag="STM1875" /note="putative RBS for STM1874; RegulonDB:STMS1H002038" regulatory complement(1969922..1969927) /regulatory_class="ribosome_binding_site" /gene="yobA" /locus_tag="STM1875" /note="putative RBS for yobA; RegulonDB:STMS1H002039" gene 1970039..1970281 /gene="holE" /locus_tag="STM1876" /db_xref="GeneID:1253397" regulatory 1970039..1970044 /regulatory_class="ribosome_binding_site" /gene="holE" /locus_tag="STM1876" /note="putative RBS for holE; RegulonDB:STMS1H002040" CDS 1970051..1970281 /gene="holE" /locus_tag="STM1876" /EC_number="2.7.7.7" /note="similar to E. coli DNA polymerase III, theta subunit (AAC74912.1); Blastp hit to AAC74912.1 (76 aa), 88% identity in aa 1 - 76" /codon_start=1 /transl_table=11 /product="DNA polymerase III, theta subunit" /protein_id="NP_460833.1" /db_xref="GeneID:1253397" /translation="MKTNLAQLEQAEMDKVNVDLAAAGVAFKERYNMPVVAEAVEREQ PEHLRAWFRERLIAHRLASVSLSRLPYEPKVK" misc_feature 1970051..1970275 /gene="holE" /locus_tag="STM1876" /note="DNA polymerase III subunit theta; Reviewed; Region: PRK10969" /db_xref="CDD:182872" gene 1970377..1971045 /locus_tag="STM1877" /db_xref="GeneID:1253398" regulatory 1970377..1970382 /regulatory_class="ribosome_binding_site" /locus_tag="STM1877" /note="putative RBS for STM1877; RegulonDB:STMS1H002041" CDS 1970389..1971045 /locus_tag="STM1877" /note="similar to E. coli orf, hypothetical protein (AAC74913.1); Blastp hit to AAC74913.1 (218 aa), 65% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="putative amidohydrolase" /protein_id="NP_460834.1" /db_xref="GeneID:1253398" /translation="MSSWKIAAAQYAPLNASPAEHVAHHLEYIELAARQQCELLVFPS LSLLGCDERNKSLPAPPDEALLQPLTHAADTHHMTIIVGMPVEHNCRFVKGIAIFAPW LTSPLMFHKSHGACIARQRSAINVVDEQPEGGDIDPSFTLFTTSQCLNEPELHASTSR LQRFSHKYALAVLMANACGSSALWNESGQLIVRADCGSLLLTGLRTTEGWQGDIIPLR " misc_feature 1970401..>1970727 /locus_tag="STM1877" /note="Carbon-nitrogen hydrolase; Region: CN_hydrolase; pfam00795" /db_xref="CDD:425873" gene 1971057..1971767 /gene="exoX" /locus_tag="STM1878" /db_xref="GeneID:1253399" regulatory 1971057..1971062 /regulatory_class="ribosome_binding_site" /gene="exoX" /locus_tag="STM1878" /note="putative RBS for exoX; RegulonDB:STMS1H002042" CDS 1971069..1971767 /gene="exoX" /locus_tag="STM1878" /EC_number="3.1.11.-" /note="degrades ss and ds DNA with 3'-5' polarity; similar to E. coli orf, hypothetical protein (AAC74914.1); Blastp hit to AAC74914.1 (220 aa), 90% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="DNA exonuclease X" /protein_id="NP_460835.1" /db_xref="GeneID:1253399" /translation="MLRIIDTETCGLQGGIVEIASVDVIDGNIVNPMSHLIRPDRPIT PQAMAIHRITEAMVADKPWIEDVIPLYYGSEWYVAHNASFDRRVLPELPGEWICTMKL SRRLWPGIKYSNMALYKSRKLSVQTPPGLHHHRALYDCYITAALLIDIMRTTGWTAEE MVNITGRPALLTTFPFGKYRGKAVSEVAKRDPGYLRWLFNNLDNMSPELRLTLKHYLE DVQAGEQRSNGTPQ" misc_feature 1971069..1971725 /gene="exoX" /locus_tag="STM1878" /note="exodeoxyribonuclease X; Provisional; Region: PRK07983" /db_xref="CDD:181186" gene complement(1971802..1973866) /gene="ptrB" /locus_tag="STM1879" /db_xref="GeneID:1253400" CDS complement(1971802..1973853) /gene="ptrB" /locus_tag="STM1879" /EC_number="3.4.21.83" /note="similar to E. coli protease II (AAC74915.1); Blastp hit to AAC74915.1 (686 aa), 89% identity in aa 1 - 680" /codon_start=1 /transl_table=11 /product="protease II" /protein_id="NP_460836.1" /db_xref="GeneID:1253400" /translation="MLPKANRIPYAMTVHGDTRIDNYYWLRDDTRSQPEVLDYLHQEN EYGRKVMTSQQALQDRILKEIIDRIPPREVSAPYVKNGYRYRYIYEPGCEYAIYQRQS ALSEEWDVWETLLDANQRAAHSEFYTLGGLAITPDNTIMALAEDYLSRRQYGLRFRNL ESGNWYPELLDNVAPEFVWANDSLTLYYVRKHKKTLLPYQVWRHTIGTPSSQDELVYE EKDDTFYVSLHKTTSQHYVVIHLASATTSEVLLLDAELADAEPFSFLPRRKDHEYSLD HYQHKFYLRSNRNGKNFGLYRTRVRNENAWEELIPPREHIMLEGFTLFTDWLVVEERQ RGLTSLRQINRKTREVIGIAFDDPAYVTWLAYNPEPETSRLRYGYSSMTTPDTLFELD MDTGERRVLKQTEVPGFDSGCYQSEHLWITARDGVEVPVSLVYHQKYFRKGQNPLLVY GYGSYGSSIDADFSSSRLSLLDRGFVYAIVHVRGGGELGQQWYEDGKFLKKRNTFNDY LDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINERPELFHGVIAQVPFVDVLTTML DESIPLTTGEFEEWGNPQDIEYYDYMKSYSPYDNVKAQDYPHLLVTTGLHDSQVQYWE PAKWVAKLRELKTDQRLLLLCTDMDSGHGGKSGRFKSYEGVALEFAFLIGLAQGTLHS A" misc_feature complement(1971805..1973853) /gene="ptrB" /locus_tag="STM1879" /note="protease 2; Provisional; Region: PRK10115" /db_xref="CDD:182247" regulatory complement(1973861..1973866) /regulatory_class="ribosome_binding_site" /gene="ptrB" /locus_tag="STM1879" /note="putative RBS for ptrB; RegulonDB:STMS1H002043" gene complement(1974066..1974735) /gene="yebE" /locus_tag="STM1880" /db_xref="GeneID:1253401" CDS complement(1974066..1974725) /gene="yebE" /locus_tag="STM1880" /note="similar to E. coli orf, hypothetical protein (AAC74916.1); Blastp hit to AAC74916.1 (219 aa), 86% identity in aa 1 - 217" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460837.1" /db_xref="GeneID:1253401" /translation="MANWLNQLQSLLGQKGASASPSGEQGLNKLLVPGALGGLAGLLV ANKSSRKLLTKYGTGALLVGGGAVAGSVLWNKYKDKVRAAHQGEPQFGSQSTPLDVRT ERLILALVFAAKSDGHIDAKERAAIEHQLRESGVEEQGRVFIEKAIEQPLDPQRLAQG IRNEEEALEIYFLSCAAIDIDHFMERSYLNALGDALKIPQEVRDGIEQDLQQQKQALP G" misc_feature complement(1974096..1974722) /gene="yebE" /locus_tag="STM1880" /note="Uncharacterized membrane protein YebE, DUF533 family [Function unknown]; Region: YebE; COG2979" /db_xref="CDD:442218" regulatory complement(1974730..1974735) /regulatory_class="ribosome_binding_site" /gene="yebE" /locus_tag="STM1880" /note="putative RBS for yebE; RegulonDB:STMS1H002044" gene complement(1974819..1975184) /gene="yebF" /locus_tag="STM1881" /db_xref="GeneID:1253402" CDS complement(1974819..1975172) /gene="yebF" /locus_tag="STM1881" /note="similar to E. coli orf, hypothetical protein (AAC74917.1); Blastp hit to AAC74917.1 (122 aa), 76% identity in aa 5 - 122" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460838.1" /db_xref="GeneID:1253402" /translation="MNKRGALLSLLFLSASVSAFAASTESKSVKFPQCEGLDAAGIAA SVKRDYQQNRIVRWADDQKKVGQADPVAWVNVQDVVGQNDKWTVPLTVRGKSADIHYQ VIVDCKAGKAEYKPR" misc_feature complement(1974822..>1975100) /gene="yebF" /locus_tag="STM1881" /note="YebF-like protein; Region: YebF; cl23934" /db_xref="CDD:474099" regulatory complement(1975179..1975184) /regulatory_class="ribosome_binding_site" /gene="yebF" /locus_tag="STM1881" /note="putative RBS for yebF; RegulonDB:STMS1H002045" gene complement(1975240..1975543) /gene="yebG" /locus_tag="STM1882" /db_xref="GeneID:1253403" CDS complement(1975240..1975530) /gene="yebG" /locus_tag="STM1882" /note="similar to E. coli orf, hypothetical protein (AAC74918.1); Blastp hit to AAC74918.1 (96 aa), 79% identity in aa 1 - 96" /codon_start=1 /transl_table=11 /product="DNA damage-inducible gene in SOS regulon, dependent on cyclic AMP and H-NS" /protein_id="NP_460839.1" /db_xref="GeneID:1253403" /translation="MAVEVKYVVIREGEEKMSFTSKKEADAWDKMLDTADLLDTWLEQ SPVVLEDGQREALSLWLAEHKEVLSTILKTGKLPSPQAVEKDAASKTKKQAA" misc_feature complement(1975243..1975530) /gene="yebG" /locus_tag="STM1882" /note="DNA damage-inducible protein YebG; Provisional; Region: PRK10061" /db_xref="CDD:182216" regulatory complement(1975538..1975543) /regulatory_class="ribosome_binding_site" /gene="yebG" /locus_tag="STM1882" /note="putative RBS for yebG; RegulonDB:STMS1H002046" gene 1975647..1976839 /gene="purT" /locus_tag="STM1883" /db_xref="GeneID:1253404" regulatory 1975647..1975652 /regulatory_class="ribosome_binding_site" /gene="purT" /locus_tag="STM1883" /note="putative RBS for purT; RegulonDB:STMS1H002047" CDS 1975661..1976839 /gene="purT" /locus_tag="STM1883" /EC_number="2.1.2.-" /note="similar to E. coli phosphoribosylglycinamide formyltransferase 2 (AAC74919.1); Blastp hit to AAC74919.1 (392 aa), 87% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide formyltransferase 2" /protein_id="NP_460840.1" /db_xref="GeneID:1253404" /translation="MTLLGTALRPAATRVMLLGAGELGKEVAIECQRLGIEVIAVDRY PDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEIEAIATDTLRELEGEGLNVV PCARATQLTMNREGIRRLAAEELGLPTSTYRFADSEASFHDAVAAVGFPCIVKPVMSS SGKGQSFIRSAEQLAQAWEYAQQGGRAGAGRVIVEGVVKFDFEITLLTVSAVDGVHFC APVGHRQQDGDYRESWQPQQMSELALKRAQEIARHVVLALGGHGLFGVELFVCGDEVI FSEVSPRPHDTGMVTLISQDLSEFALHVRAFLGMPVGAIRQYGPAASAVILPQLTSQN VTFDNVHAAVGAGVQVRLFGKPEIDGTRRLGVALATGENVEEAVIRAKKAVSRVTVKG " misc_feature 1975661..1976833 /gene="purT" /locus_tag="STM1883" /note="Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]; Region: PurT; COG0027" /db_xref="CDD:439798" gene complement(1976939..1977754) /gene="eda" /locus_tag="STM1884" /db_xref="GeneID:1253405" CDS complement(1976939..1977580) /gene="eda" /locus_tag="STM1884" /EC_number="4.1.2.14" /EC_number="4.1.1.112" /EC_number="4.1.3.16" /note="multifunctional; similar to E. coli 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase (AAC74920.1); Blastp hit to AAC74920.1 (213 aa), 97% identity in aa 1 - 212; oxaloacetate decarboxylase" /codon_start=1 /transl_table=11 /product="2-keto-3-deoxygluconate 6-phosphate aldolase" /protein_id="NP_460841.1" /db_xref="GeneID:1253405" /translation="MKNWKTSAEAILTTGPVVPVIVVNKLEHAVPMAKALVAGGVRVL EVTLRTACAMDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISPGLTEPLLK AATAGTIPLIPGISTVSELMLGMDYGLKEFKFFPAEANGGTKALQAIAGPFSQVRFCP TGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREAVEGAKQ" misc_feature complement(1976945..1977580) /gene="eda" /locus_tag="STM1884" /note="keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase; Provisional; Region: PRK05718" /db_xref="CDD:235577" misc_feature complement(order(1977098..1977100,1977176..1977178, 1977182..1977184,1977362..1977364,1977434..1977436, 1977446..1977448,1977521..1977523)) /gene="eda" /locus_tag="STM1884" /note="active site" /db_xref="CDD:188632" misc_feature complement(order(1977122..1977127,1977137..1977139, 1977173..1977178,1977203..1977205,1977215..1977217, 1977221..1977232,1977290..1977301,1977356..1977358, 1977362..1977364,1977434..1977436)) /gene="eda" /locus_tag="STM1884" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:188632" misc_feature complement(1977182..1977184) /gene="eda" /locus_tag="STM1884" /note="catalytic residue [active]" /db_xref="CDD:188632" regulatory complement(1977595..1977600) /regulatory_class="ribosome_binding_site" /gene="eda" /locus_tag="STM1884" /note="putative RBS for eda; RegulonDB:STMS1H002048" gene complement(1977618..1979494) /gene="edd" /locus_tag="STM1885" /db_xref="GeneID:1253406" CDS complement(1977618..1979429) /gene="edd" /locus_tag="STM1885" /EC_number="4.2.1.12" /note="similar to E. coli 6-phosphogluconate dehydratase (AAC74921.1); Blastp hit to AAC74921.1 (603 aa), 94% identity in aa 1 - 603" /codon_start=1 /transl_table=11 /product="6-phosphogluconate dehydratase" /protein_id="NP_460842.1" /db_xref="GeneID:1253406" /translation="MNPNLLRVTQRIVERSQQTREAYLARIEQAKTATVHRSQLACGN LAHGFAACQPEDKASLKSMLRNNIAIITSYNDMLSAHQPYEHYPQIIRQALHSVNAVG QVAGGVPAMCDGVTQGQDGMELSLLSREVIAMSAAVGLSHNMFDGALFLGVCDKIVPG LAMAALSFGHLPAIFVPSGPMASGLPNKEKVRIRQLYAEGKVDRMALLESEAASYHAP GTCTFYGTANTNQMVVEFMGMQLPGSSFVHPDAPLREALTAAAARQVTRLTGNGNTWM PLGKMIDEKVVVNGIVALLATGGSTNHTMHLVAMARAAGILINWDDFSDLSEVVPLMA RLYPNGPADINHFQAAGGVPVLMRELLNAGLLHEDVNTVAGFGLKRYTLEPWLNNGEL DWREGAERSLDNDVIASFDKPFSPHGGTKVLSGNLGRAVMKTSAVPVENQIIEAPAMV FESQHDVLPAFDAGLLDRDCVVVVRHQGPKANGMPELHKLMPPLGVLLDRRFKIALVT DGRLSGASGKVPSAIHVTPEAYDGGLLAKVRDGDIIRVNGQTGELTLLVDEAELAARQ PHIPDLSASRVGTGRELFGALREKLSGAEQGATCITF" misc_feature complement(1977624..1979426) /gene="edd" /locus_tag="STM1885" /note="6-phosphogluconate dehydratase; Region: edd; TIGR01196" /db_xref="CDD:130264" regulatory complement(1977730..1977738) /regulatory_class="minus_10_signal" /gene="eda" /locus_tag="STM1884" /note="putative -10_signal for eda; RegulonDB:STMLTH004515" regulatory complement(1977746..1977754) /regulatory_class="minus_35_signal" /gene="eda" /locus_tag="STM1884" /note="putative -35_signal for eda; RegulonDB:STMLTH004515" regulatory complement(1979435..1979440) /regulatory_class="ribosome_binding_site" /gene="edd" /locus_tag="STM1885" /note="putative RBS for edd; RegulonDB:STMS1H002049" regulatory complement(1979470..1979478) /regulatory_class="minus_10_signal" /gene="edd" /locus_tag="STM1885" /note="putative -10_signal for edd; RegulonDB:STMLTH004516" regulatory complement(1979486..1979494) /regulatory_class="minus_35_signal" /gene="edd" /locus_tag="STM1885" /note="putative -35_signal for edd; RegulonDB:STMLTH004516" gene complement(1979664..1981336) /gene="zwf" /locus_tag="STM1886" /db_xref="GeneID:1253407" CDS complement(1979664..1981139) /gene="zwf" /locus_tag="STM1886" /EC_number="1.1.1.49" /note="similar to E. coli glucose-6-phosphate dehydrogenase (AAC74922.1); Blastp hit to AAC74922.1 (491 aa), 97% identity in aa 1 - 491" /codon_start=1 /transl_table=11 /product="glucose-6-phosphate dehydrogenase" /protein_id="NP_460843.1" /db_xref="GeneID:1253407" /translation="MAVTQTAQACDLVIFGAKGDLARRKLLPSLYQLEKAGQIHPDTR IIGVGRADWDKEAYTHVVREALETFMKEKIDEGLWDTLSGRLDFCNLDVNDTPAFSRL GDMLDQKNRTTINYFAMPPSTFGAICKGLGEAKLNAKPARVVMEKPLGTSLATSREIN DRVGEYFEECQVYRIDHYLGKETVLNLLALRFANSLFVNNWDNRTIDHVEITVAEEVG IEGRWGYFDQAGQMRDMIQNHLLQILCMIAMSPPSDLSADSIRDEKVKVLKSLRRIDR SNVREKTVRGQYTAGFAQGQKVPGYLEEEGANKSSNTETFVAIRVDIDNWRWAGVPFY LRTGKRLPTKCSEVVVYFKTPELNLFKESWQDLPQNKLTIRLQPDEGVDIQVLNKVPG LDHKHNLQITKLDLSYSETFNQTHLADAYERLLLETMRGIQALFVRRDEVEEAWKWVD SITEAWAMDNDAPKPYQAGTWGPVASVAMITRDGRSWNEFE" misc_feature complement(1979673..1981139) /gene="zwf" /locus_tag="STM1886" /note="Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]; Region: Zwf; COG0364" /db_xref="CDD:440133" regulatory complement(1981146..1981151) /regulatory_class="ribosome_binding_site" /gene="zwf" /locus_tag="STM1886" /note="putative RBS for zwf; RegulonDB:STMS1H002050" regulatory complement(1981309..1981317) /regulatory_class="minus_10_signal" /gene="zwf" /locus_tag="STM1886" /note="putative -10_signal for zwf; RegulonDB:STMLTH004517" regulatory complement(1981328..1981336) /regulatory_class="minus_35_signal" /gene="zwf" /locus_tag="STM1886" /note="putative -35_signal for zwf; RegulonDB:STMLTH004517" protein_bind complement(1981431..1981449) /note="putative binding site for SoxS, RegulonDB: STMS1H000366" /bound_moiety="SoxS" gene 1981481..1982350 /gene="yebK" /locus_tag="STM1887" /db_xref="GeneID:1253408" CDS 1981481..1982350 /gene="yebK" /locus_tag="STM1887" /note="similar to E. coli orf, hypothetical protein (AAC74923.1); Blastp hit to AAC74923.1 (289 aa), 92% identity in aa 1 - 289" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_460844.1" /db_xref="GeneID:1253408" /translation="MNMLEKVQSQLEHLSKSERKVADVILAAPGRSIHLSIAMLAQEA NVSEPTVNRFCRSMNTRGFPDFKLHLAQSLANGTPYVNRNVDEDDSVEAYTGKIFESA MASLDHVRQSLDKSAVNRAVDLLTQAKKIAFFGLGSSAAVAHDAMNKFFRFNVPVIYS DDIVLQRMSCMNCSDDDVVVLISHTGRTKSLVELAQLARENDAMVIALTSAGTPLARE ATLAITLDVPEDTDIYMPMVSRLAQLTVIDVLATGFTLRRGAKFRDNLKRVKEALKES RFDKELLIKSDDR" misc_feature 1981481..1982332 /gene="yebK" /locus_tag="STM1887" /note="DNA-binding transcriptional regulator HexR; Provisional; Region: PRK11302" /db_xref="CDD:183082" gene 1982462..1983916 /gene="pykA" /locus_tag="STM1888" /db_xref="GeneID:1253409" regulatory 1982462..1982467 /regulatory_class="ribosome_binding_site" /gene="pykA" /locus_tag="STM1888" /note="putative RBS for pykA; RegulonDB:STMS1H002051" CDS 1982474..1983916 /gene="pykA" /locus_tag="STM1888" /EC_number="2.7.1.40" /note="glucose stimulated; similar to E. coli pyruvate kinase II, glucose stimulated (AAC74924.1); Blastp hit to AAC74924.1 (480 aa), 98% identity in aa 1 - 480" /codon_start=1 /transl_table=11 /product="pyruvate kinase II" /protein_id="NP_460845.1" /db_xref="GeneID:1253409" /translation="MSRRLRRTKIVTTLGPATDRDNNLEKVIAAGANVVRMNFSHGSP EDHKMRADKVREIAAKLGRHVAILGDLQGPKIRVSTFKEGKVFLNIGDKFLLDANLGK GEGDKEKVGIDYKGLPADVVPGDILLLDDGRVQLKVLEVQGMKVFTEVTVGGPLSNNK GINKLGGGLSAEALTEKDKADIQTAALIGVDYLAVSFPRCGEDLNYARRLARDAGCDA KIVAKVERAEAVCDQNAMDDIILASDVVMVARGDLGVEIGDPELVGIQKALIRRARQL NRAVITATQMMESMITNPMPTRAEVMDVANAVLDGTDAVMLSAETAAGQYPSETVAAM ARVCLGAEKIPSINVSKHRLDVQFDNVEEAIAMSAMYAANHLKGVTAIITMTESGRTA LMTSRISSGLPIFAMSRHERTLNLTALYRGVTPVHFDSAADGVVAAHEAVNLLRDKGY LVSGDLVIVTQGDVMSTVGSTNTTRILTVE" misc_feature 1982480..1983880 /gene="pykA" /locus_tag="STM1888" /note="pyruvate kinase; Provisional; Region: PRK05826" /db_xref="CDD:235619" gene complement(1983989..1984970) /gene="msbB" /locus_tag="STM1889" /db_xref="GeneID:1253410" CDS complement(1983989..1984960) /gene="msbB" /locus_tag="STM1889" /EC_number="2.3.1.-" /note="suppressor of htrB (lpxL); similar to E. coli suppressor of htrB, heat shock protein (AAC74925.1); Blastp hit to AAC74925.1 (323 aa), 93% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="myristoyl transferase in lipid A biosynthesis" /protein_id="NP_460846.1" /db_xref="GeneID:1253410" /translation="METKKNNSEYIPEFEKSFRYPQYWGAWLGAAAMAGIALTPASFR DPLLATLGRFAGRLGKSSRRRALINLSLCFPQRSEAEREAIVDEMFATAPQAMAMMAE LAMRGPKKIQQRVDWEGLEIIEEMRRNDEKVIFLVPHGWGVDIPAMLMASQGQKMAAM FHNQGNPVFDYIWNTVRRRFGGRLHARNDGIKPFIQSVRQGYWGYYLPDQDHGPEHSE FVDFFATYKATLPAIGRLMKVCRARVIPLFPVYNGKTHRLTIQIRPPMDDLLTADDHT IARRMNEEVEIFVGPHPEQYTWILKLLKTRKPGEIQPYKRKDLYPIK" misc_feature complement(1983998..1984960) /gene="msbB" /locus_tag="STM1889" /note="lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated; Region: PRK08943" /db_xref="CDD:236355" misc_feature complement(order(1984325..1984333,1984469..1984480, 1984529..1984531,1984535..1984537,1984544..1984546)) /gene="msbB" /locus_tag="STM1889" /note="putative acyl-acceptor binding pocket [active]" /db_xref="CDD:153246" regulatory complement(1984965..1984970) /regulatory_class="ribosome_binding_site" /gene="msbB" /locus_tag="STM1889" /note="putative RBS for msbB; RegulonDB:STMS1H002052" gene complement(1985077..1986410) /gene="yebA" /locus_tag="STM1890" /db_xref="GeneID:1253411" CDS complement(1985077..1986396) /gene="yebA" /locus_tag="STM1890" /note="similar to E. coli orf, hypothetical protein (AAC74926.1); Blastp hit to AAC74926.1 (419 aa), 91% identity in aa 1 - 419" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_460847.1" /db_xref="GeneID:1253411" /translation="MQQIARSVALAFNNLPRPHRVMLGSLTVLTLAVAVWRPYVYHPE SAPIVKTIELEKSEIRSLLPEASEPIDQAAQEDEAIPQDELDDKTAGEVGVHEYVVST GDTLSSILNQYGIDMSDISRLAASDKELRNLKIGQQLSWTLTADGDLQRLTWEVSRRE TRTYDRTANGFKMSSEMQQGDWVNSLLKGTVGGSFVASAKEAGLTSSEISAVIKAMQW QMDFRKLKKGDEFSVLMSREMLDGKREQSQLLGVRMRSDGKDYYAIRAADGKFYDRNG VGLAKGFLRFPTAKQFRISSNFNPRRLNPVTGRVAPHRGVDFAMPQGTPVLSVGDGEV VVAKRSGAAGYYIAIRHGRTYTTRYMHLRKLLVKPGQKVKRGDRIALSGNTGRSTGPH LHYEVWINQQAVNPLTAKLPRTEGLTGSDRREYLAQVKEVLPQLRFD" misc_feature complement(1985080..1986396) /gene="yebA" /locus_tag="STM1890" /note="putative peptidase; Provisional; Region: PRK11649" /db_xref="CDD:236946" regulatory complement(1986405..1986410) /regulatory_class="ribosome_binding_site" /gene="yebA" /locus_tag="STM1890" /note="putative RBS for yebA; RegulonDB:STMS1H002053" gene complement(1986412..1987426) /gene="znuA" /locus_tag="STM1891" /db_xref="GeneID:1253412" CDS complement(1986412..1987413) /gene="znuA" /locus_tag="STM1891" /note="binding protein; similar to E. coli putative adhesin (AAC74927.1); Blastp hit to AAC74927.1 (328 aa), 85% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="ABC superfamily high affinity Zn transport protein" /protein_id="NP_460848.3" /db_xref="GeneID:1253412" /translation="MIECYNITFHTFITMISRIMLQKNTLLFAALSAALWGSATQAAD AAVVASLKPLGFIASAIADGVTDTQVLLPDGASEHDYSLRPSDVKRLQGADLVVWVGP EMEAFMEKSVRNIPDNKQVTIAQLADVKPLLMKGADDDEDEHAHTGADEEKGDVHHHH GEYNMHLWLSPEIARATAVAIHEKLVELMPQSRAKLDANLKDFEAQLAATDKQVGNEL APLKGKGYFVFHDAYGYYEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCV FAEPQFRPAVVEAVARGTSVRMGTLDPLGTNIKLGKTSYSAFLSQLANQYASCLKGD" misc_feature complement(1986421..1987353) /gene="znuA" /locus_tag="STM1891" /note="zinc ABC transporter substrate-binding protein ZnuA; Region: znuA; PRK09545" /db_xref="CDD:236558" misc_feature complement(order(1986508..1986510,1986724..1986726, 1986916..1986918,1987177..1987179)) /gene="znuA" /locus_tag="STM1891" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238501" gene 1987384..1988190 /gene="znuC" /locus_tag="STM1892" /db_xref="GeneID:1253413" CDS 1987384..1988190 /gene="znuC" /locus_tag="STM1892" /note="ATP-binding protein; similar to E. coli putative ATP-binding component of a transport system (AAC74928.1); Blastp hit to AAC74928.1 (251 aa), 95% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="ABC superfamily high affinity Zn transport protein" /protein_id="NP_460849.3" /db_xref="GeneID:1253413" /translation="MKCDIITFYHFCKPKINMTSLVSLENVSVSFGQRRVLSDVSLEL SPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKHNGQLRIGYVPQKLYLDTTLPLT VNRFLRLRPGTQKTDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLV LDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNHHICCS GAPEVVSMHPEFISMFGPRGAEQLGIYRHHHNHRHDLQGRIVLRRGNGHS" misc_feature 1987435..1988187 /gene="znuC" /locus_tag="STM1892" /note="high-affinity zinc transporter ATPase; Reviewed; Region: znuC; PRK09544" /db_xref="CDD:181939" regulatory complement(1987421..1987426) /regulatory_class="ribosome_binding_site" /gene="znuA" /locus_tag="STM1891" /note="putative RBS for znuA; RegulonDB:STMS1H002054" gene 1988169..1988972 /gene="znuB" /locus_tag="STM1893" /db_xref="GeneID:1253414" regulatory 1988169..1988174 /regulatory_class="ribosome_binding_site" /gene="znuB" /locus_tag="STM1893" /note="putative RBS for zunB; RegulonDB:STMS1H002055" CDS 1988187..1988972 /gene="znuB" /locus_tag="STM1893" /note="ATP-binding protein; similar to E. coli orf, hypothetical protein (AAC74929.1); Blastp hit to AAC74929.1 (261 aa), 96% identity in aa 1 - 261" /codon_start=1 /transl_table=11 /product="ABC superfamily high affinity Zn transport protein" /protein_id="NP_460850.1" /db_xref="GeneID:1253414" /translation="MIELLLPGWLAGMMLACAAGPLGSFVVWRRMSYFGDTLAHASLL GVAFGLLLDVNPFYAVIAVTLLLAAGLVWLEKRPHLAIDTLLGIMAHSALSLGLVVVS LMSNVRVDLMAYLFGDLLAVTPEDLISIAIGVVIVLAILFWQWRNLLSMTISPDLAFV DGVKLQRVKLLLMLVTALTIGVAMKFVGALIITSLLIIPAATARRFARTPEQMAGVAV GVGMIAVTGGLTFSAFYDTPAGPSVVLCAALLFIFSMMKKQAS" misc_feature 1988187..1988969 /gene="znuB" /locus_tag="STM1893" /note="zinc ABC transporter permease subunit ZnuB; Region: znuB; PRK09543" /db_xref="CDD:181938" misc_feature order(1988253..1988255,1988265..1988273,1988610..1988615, 1988619..1988627,1988631..1988636,1988640..1988657, 1988661..1988669,1988793..1988795,1988814..1988816) /gene="znuB" /locus_tag="STM1893" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119348" misc_feature order(1988268..1988270,1988274..1988276,1988289..1988291, 1988430..1988432,1988436..1988441,1988448..1988453, 1988460..1988465,1988472..1988474,1988481..1988486, 1988490..1988492,1988520..1988525,1988532..1988534, 1988760..1988762,1988907..1988909,1988916..1988921, 1988928..1988930,1988937..1988942,1988949..1988951) /gene="znuB" /locus_tag="STM1893" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119348" misc_feature order(1988490..1988492,1988562..1988564,1988736..1988738, 1988748..1988750,1988883..1988885,1988898..1988900) /gene="znuB" /locus_tag="STM1893" /note="putative PBP binding regions [active]" /db_xref="CDD:119348" gene complement(1989051..1990071) /gene="ruvB" /locus_tag="STM1894" /db_xref="GeneID:1253415" CDS complement(1989051..1990061) /gene="ruvB" /locus_tag="STM1894" /note="similar to E. coli Holliday junction helicase subunit A; branch migration; repair (AAC74930.1); Blastp hit to AAC74930.1 (336 aa), 96% identity in aa 1 - 336" /codon_start=1 /transl_table=11 /product="Holliday junction helicase, subunit B" /protein_id="NP_460851.1" /db_xref="GeneID:1253415" /translation="MIEADRLISAGATIAEDVADRAIRPKLLAEYVGQPQVRSQMEIF IQAAKRRGDALDHLLIFGPPGLGKTTLANIVANEMGVNLRTTSGPVLEKAGDLAAMLT NLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQHIVGRSARHMGLEMSDDGALEVARRARG TPRIANRLLRRVRDFAEVKHDGAISAEIAAQALDMLNVDAEGFDYMDRKLLLAVIDKF FGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMATVRAWNHFGITPPE MP" misc_feature complement(1989060..1990061) /gene="ruvB" /locus_tag="STM1894" /note="Holliday junction resolvasome RuvABC, ATP-dependent DNA helicase subunit RuvB [Replication, recombination and repair]; Region: RuvB; COG2255" /db_xref="CDD:441856" regulatory complement(1990066..1990071) /regulatory_class="ribosome_binding_site" /gene="ruvB" /locus_tag="STM1894" /note="putative RBS for ruvB; RegulonDB:STMS1H002056" gene complement(1990070..1990693) /gene="ruvA" /locus_tag="STM1895" /db_xref="GeneID:1253416" CDS complement(1990070..1990681) /gene="ruvA" /locus_tag="STM1895" /note="similar to E. coli Holliday junction helicase subunit B; branch migration; repair (AAC74931.1); Blastp hit to AAC74931.1 (203 aa), 94% identity in aa 1 - 203" /codon_start=1 /transl_table=11 /product="Holliday junction helicase subunit A" /protein_id="NP_460852.1" /db_xref="GeneID:1253416" /translation="MIGRLRGIILEKQPPIVLLETGGVGYEVHMPMTCFYELPEAGQE AIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAV EREELGALVKLPGIGKKTAERLIVEMKDRFKGLHGDLFTPAVDLVLTSPASPTSEDAE QEAVAALVALGYKPQEASRMVSKIARPDASSETLIRDALRAAL" misc_feature complement(1990073..1990681) /gene="ruvA" /locus_tag="STM1895" /note="Holliday junction branch migration protein RuvA; Region: ruvA; PRK00116" /db_xref="CDD:234645" regulatory complement(1990688..1990693) /regulatory_class="ribosome_binding_site" /gene="ruvA" /locus_tag="STM1895" /note="putative RBS for ruvA; RegulonDB:STMS1H002057" gene 1991096..1991997 /locus_tag="STM1896" /db_xref="GeneID:1253417" regulatory 1991096..1991101 /regulatory_class="ribosome_binding_site" /locus_tag="STM1896" /note="putative RBS for STM1896; RegulonDB:STMS1H002058" CDS 1991101..1991997 /locus_tag="STM1896" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460853.1" /db_xref="GeneID:1253417" /translation="MAIEQQAIAYTVSQKWDKLDAMFQEYNTGFPTTSGGTHKLVIAW GGIYNLFSVDVSDNGISGVAKEWLKANPKSTGARLLQAMVFDAKAVNLRGEGAASTVD SDIWPKYKKLMIQEKEYLLKNKDIADKDVTWYQEMEMVARNLEDKELLYSTLEEASKK YPAYQNIYIEAMVARLPKWGGSPEEVEKIARMAAEKNKDQSGLSYYAYIWSNAIHYQP ELMALLNKRQIVSWDDMLQGWRDRYKQFPSTRTLNNILISSCIARDKDSFVKADKMIQ GETERDTWPQGLNYRECQQSFQ" gene 1992611..1993223 /gene="yebB" /locus_tag="STM1897" /db_xref="GeneID:1253418" regulatory 1992611..1992616 /regulatory_class="ribosome_binding_site" /gene="yebB" /locus_tag="STM1897" /note="putative RBS for yebB; RegulonDB:STMS1H002059" CDS 1992624..1993223 /gene="yebB" /locus_tag="STM1897" /note="similar to E. coli orf, hypothetical protein (AAC74932.1); Blastp hit to AAC74932.1 (233 aa), 80% identity in aa 37 - 228" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460854.1" /db_xref="GeneID:1253418" /translation="MKKHYSVQYETGDIVFTCIGAALFGQISTASQCWSNHVGIIIGH NGDDYLVAESRVPLSTVTTLSLFIQRSAGQRYAVRRLCGGLTVEQKLAIMEQVPARLN KFYHTGFKYESSRQFCSKFVFDIYKEALCIPVGDIETFEELLHSNPDAKLAFWKFWFL GSIPWDRKTVTPASLWHHPNLELISACGIETPQREAEGE" misc_feature 1992624..1993220 /gene="yebB" /locus_tag="STM1897" /note="YebB family permuted papain-like enzyme; Region: PRK11470" /db_xref="CDD:183152" gene complement(1993225..1993759) /gene="ruvC" /locus_tag="STM1898" /db_xref="GeneID:1253419" CDS complement(1993225..1993746) /gene="ruvC" /locus_tag="STM1898" /EC_number="3.1.21.10" /note="similar to E. coli Holliday junction nuclease; resolution of structures; repair (AAC74933.1); Blastp hit to AAC74933.1 (173 aa), 97% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="Holliday junction nuclease" /protein_id="NP_460855.1" /db_xref="GeneID:1253419" /translation="MSIILGIDPGSRITGYGVIRQVGRQLTYLGSGCIRTKVDDLPSR LKLIYAGVTEIITQFQPDYFAIEQVFMAKNADSALKLGQARGVAIVAAVNQELPVFEY AARQVKQTVVGIGSAEKSQVQHMVRTLLKLPANPQADAADALAIAITHCHVSQNAMQM SESRLNLARGRLR" misc_feature complement(1993270..1993737) /gene="ruvC" /locus_tag="STM1898" /note="crossover junction endodeoxyribonuclease RuvC; Region: ruvC; TIGR00228" /db_xref="CDD:129331" misc_feature complement(order(1993432..1993434,1993504..1993509, 1993516..1993518,1993522..1993524,1993528..1993530, 1993534..1993542,1993615..1993617,1993633..1993635, 1993642..1993644,1993711..1993719)) /gene="ruvC" /locus_tag="STM1898" /note="nucleic acid substrate binding site [nucleotide binding]; other site" /db_xref="CDD:438562" misc_feature complement(order(1993450..1993452,1993456..1993458, 1993465..1993470,1993477..1993482,1993486..1993491, 1993498..1993503,1993510..1993515,1993522..1993524, 1993531..1993533,1993600..1993602,1993609..1993614, 1993618..1993626)) /gene="ruvC" /locus_tag="STM1898" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:438562" regulatory complement(1993754..1993759) /regulatory_class="ribosome_binding_site" /gene="ruvC" /locus_tag="STM1898" /note="putative RBS for ruvC; RegulonDB:STMS1H002060" gene complement(1993783..1994535) /gene="yebC" /locus_tag="STM1899" /db_xref="GeneID:1253420" CDS complement(1993783..1994523) /gene="yebC" /locus_tag="STM1899" /note="similar to E. coli orf, hypothetical protein (AAC74934.1); Blastp hit to AAC74934.1 (246 aa), 98% identity in aa 1 - 246" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460856.1" /db_xref="GeneID:1253420" /translation="MAGHSKWANTRHRKAAQDAKRGKIFTKIIRELVTAAKLGGGDPD ANPRLRAAVDKALANNMTRDTLNRAIARGVGGDEDSNMETIIYEGYGPGGTAIMIECL SDNRNRTVAEVRHAFSKCGGNLGTDGSVAYLFSKKGVISFEKGDEDTIMEAALEAGAE DVVTYDDGAIDVYTAWEEMGKVRDALEAAGLKADSAEVSMIPSTKADMDAETAPKLLR LIDMLEDCDDVQEVYHNGEISDEVAATL" misc_feature complement(1993786..1994523) /gene="yebC" /locus_tag="STM1899" /note="YebC/PmpR family DNA-binding transcriptional regulator; Region: PRK00110" /db_xref="CDD:234640" regulatory complement(1994530..1994535) /regulatory_class="ribosome_binding_site" /gene="yebC" /locus_tag="STM1899" /note="putative RBS for yebC; RegulonDB:STMS1H002061" gene complement(1994553..1995013) /gene="ntpA" /locus_tag="STM1900" /db_xref="GeneID:1253421" CDS complement(1994553..1995005) /gene="ntpA" /locus_tag="STM1900" /EC_number="3.6.1.-" /note="similar to E. coli dATP pyrophosphohydrolase (AAC74935.1); Blastp hit to AAC74935.1 (150 aa), 88% identity in aa 1 - 150" /codon_start=1 /transl_table=11 /product="dATP pyrophosphohydrolase" /protein_id="NP_460857.1" /db_xref="GeneID:1253421" /translation="MKDKVYKRPVSVLVVIFAQDTKRVLMLQRRDDPDFWQSVTGSIE EGETALQAAVREVKEEVTIDVAAEQLTLIDCQRTVEFEIFSHLRHRYAPGVMHNTEFW FCLALPHERQVIFTEHLTYQWLDAPDAAALTKSWSNRQAIEEFVINVA" misc_feature complement(1994556..1994996) /gene="ntpA" /locus_tag="STM1900" /note="dihydroneopterin triphosphate pyrophosphatase; Provisional; Region: nudB; PRK09438" /db_xref="CDD:236516" regulatory complement(1995008..1995013) /regulatory_class="ribosome_binding_site" /gene="ntpA" /locus_tag="STM1900" /note="putative RBS for ntpA; RegulonDB:STMS1H002062" gene complement(1995108..1996892) /gene="aspS" /locus_tag="STM1901" /db_xref="GeneID:1253422" CDS complement(1995108..1996880) /gene="aspS" /locus_tag="STM1901" /EC_number="6.1.1.12" /note="similar to E. coli aspartate tRNA synthetase (AAC74936.1); Blastp hit to AAC74936.1 (590 aa), 94% identity in aa 1 - 590" /codon_start=1 /transl_table=11 /product="aspartate tRNA synthetase" /protein_id="NP_460858.1" /db_xref="GeneID:1253422" /translation="MRTEYCGQLRLSHVGQQVTLCGWVNRRRDLGSLIFIDMRDREGI VQVFFDPDRADALKLASELRNEFCIQVTGTVRARDAKNVNADMATGEIEVLASSLTII NRADSLPLDANHVNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDI ETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD EDLRADRQPEFTQIDVETSFMTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAE RRYGSDKPDLRNPMELVDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGAQLSRKQI DDYGNFVKIYGAKGLAYIKVNERAKGLDGINSPVAKFLTADIVEAILERTGAQDGDMI FFGADNNKVVADALGALRLKLGKDLSLTDEDKWAPLWVIDFPMFEDDGEGGLTAMHHP FTAPRDMTASELKTAPEGAVANAYDMVINGYEVGGGSVRIHNGEMQQTVFGILGINEQ EQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAFPKTTAAACLMTE APSFANLAALTELGIQVVKKAENN" misc_feature complement(1995117..1996880) /gene="aspS" /locus_tag="STM1901" /note="Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: AspS; COG0173" /db_xref="CDD:439943" regulatory complement(1996887..1996892) /regulatory_class="ribosome_binding_site" /gene="aspS" /locus_tag="STM1901" /note="putative RBS for aspS; RegulonDB:STMS1H002063" gene 1997189..1997771 /gene="yecD" /locus_tag="STM1902" /db_xref="GeneID:1253423" regulatory 1997189..1997194 /regulatory_class="ribosome_binding_site" /gene="yecD" /locus_tag="STM1902" /note="putative RBS for yecD; RegulonDB:STMS1H002064" CDS 1997205..1997771 /gene="yecD" /locus_tag="STM1902" /note="similar to E. coli orf, hypothetical protein (AAC74937.1); Blastp hit to AAC74937.1 (199 aa), 80% identity in aa 12 - 199" /codon_start=1 /transl_table=11 /product="putative isochorismatase" /protein_id="NP_460859.1" /db_xref="GeneID:1253423" /translation="MLKLNATTTALVVIDLQEGILPFAGGPYTANEVVARAARLAEKC RANGSPVVMVRVGWSDDYAEALKQPVDAATPAHALPENWWTWPTALGKKDSDLEVTKR QWGAFYGTDLELQLRRRGIDTIILCGISTNIGVESTARNAWELGFNLIIAEDACSAAS SEQHQSSMTHIFPRIGRVRSVEDILNAL" misc_feature 1997205..1997768 /gene="yecD" /locus_tag="STM1902" /note="putative hydrolase; Provisional; Region: PRK11440" /db_xref="CDD:183137" misc_feature order(1997247..1997249,1997505..1997507,1997604..1997606) /gene="yecD" /locus_tag="STM1902" /note="catalytic triad [active]" /db_xref="CDD:238245" misc_feature 1997589..1997594 /gene="yecD" /locus_tag="STM1902" /note="conserved cis-peptide bond [active]" /db_xref="CDD:238245" gene 1997748..1998586 /gene="yecE" /locus_tag="STM1903" /db_xref="GeneID:1253424" regulatory 1997748..1997753 /regulatory_class="ribosome_binding_site" /gene="yecD" /locus_tag="STM1902" /note="putative RBS for yecE; RegulonDB:STMS1H002065" CDS 1997768..1998586 /gene="yecE" /locus_tag="STM1903" /note="similar to E. coli orf, hypothetical protein (AAC74938.1); Blastp hit to AAC74938.1 (272 aa), 82% identity in aa 1 - 272" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460860.1" /db_xref="GeneID:1253424" /translation="MIYIGLPQWSHPKWARLGITSLEEYARHFNCVEGNTTLYALPKA EIVDRWYAQTTDDFRFCFKFPATISHQAALRHCDDLVQAFFTRLAPLETRIGQYWLQL PAAFGPRDLPALWQFLDALPATFTYGVEVRHPCFFDKGEDEQRLNRGLHARGVNRVIL DSRPVHAAHPHSEAVRDAQRKKPKVPVHAVVTASHPMVRFIGSDNMAQNREFFAAWLQ KLPQWRQTTTPFLFLHTPDIAQAPELVNTLWHDLRSVLPEIGTAPSIPQQSSLF" misc_feature 1997768..1998583 /gene="yecE" /locus_tag="STM1903" /note="hypothetical protein; Provisional; Region: PRK10302" /db_xref="CDD:182366" gene 1998627..1999034 /gene="yecN" /locus_tag="STM1904" /db_xref="GeneID:1253425" regulatory 1998627..1998632 /regulatory_class="ribosome_binding_site" /gene="yecN" /locus_tag="STM1904" /note="putative RBS for yecN; RegulonDB:STMS1H002066" CDS 1998639..1999034 /gene="yecN" /locus_tag="STM1904" /note="similar to E. coli orf, hypothetical protein (AAC74939.1); Blastp hit to AAC74939.1 (141 aa), 93% identity in aa 11 - 140" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460861.1" /db_xref="GeneID:1253425" /translation="MVSALYAVLGALLLMKFSFNVVRLRMQYRVAYGDGGFSELQSAI RIHGNAVEYIPVALVLLLFMEMNGAETWMVHICGIILIAGRLMHYYGFHHRLFRWRRA GMSATWCALLLMVLANLWYMPWELVFSLY" misc_feature 1998639..1999016 /gene="yecN" /locus_tag="STM1904" /note="Uncharacterized membrane protein YecN, MAPEG domain [Function unknown]; Region: YecN; COG3788" /db_xref="CDD:443002" gene 1999060..1999818 /gene="yecO" /locus_tag="STM1905" /db_xref="GeneID:1253426" regulatory 1999060..1999065 /regulatory_class="ribosome_binding_site" /gene="yecO" /locus_tag="STM1905" /note="putative RBS for yecO; RegulonDB:STMS1H002067" CDS 1999075..1999818 /gene="yecO" /locus_tag="STM1905" /note="similar to E. coli orf, hypothetical protein (AAC74940.1); Blastp hit to AAC74940.1 (247 aa), 93% identity in aa 1 - 247" /codon_start=1 /transl_table=11 /product="putative SAM-dependent methyltransferase" /protein_id="NP_460862.1" /db_xref="GeneID:1253426" /translation="MSHRDTLFSAPIARLGDWTFDERVAEVFPDMIQRSVPGYSNIIS MIGMLAERFVQPNTQVYDLGCSLGAATLSVRRNIRHEHCRIIAVDNSPAMIERCRRHI DAYKAPTPVEVVEGDIRDITIENASMVVLNFTLQFLEPAERQALLDKIYLGLNPGGAL VLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARL RQAGFEHSELWFQCFNFGSLVALKAGVAA" misc_feature 1999084..1999800 /gene="yecO" /locus_tag="STM1905" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173" /db_xref="CDD:473071" misc_feature order(1999261..1999281,1999339..1999344,1999420..1999428, 1999468..1999470) /gene="yecO" /locus_tag="STM1905" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 1999802..2000786 /gene="yecP" /locus_tag="STM1906" /db_xref="GeneID:1253427" regulatory 1999802..1999807 /regulatory_class="ribosome_binding_site" /gene="yecO" /locus_tag="STM1905" /note="putative RBS for yecP; RegulonDB:STMS1H002068" CDS 1999815..2000786 /gene="yecP" /locus_tag="STM1906" /note="similar to E. coli putative enzyme (AAC74941.1); Blastp hit to AAC74941.1 (323 aa), 92% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="putative enzyme" /protein_id="NP_460863.1" /db_xref="GeneID:1253427" /translation="MIEFGNFYQLIAKNHLSHWLETLPAQIASWQREQQHGLFKQWSN AVEFLPEMTPWRLDLLHSVTAESETPLSEGQLKRIDTLLRNLMPWRKGPFSLYGVDID TEWRSDWKWDRVLPHLSDLTGRTILDVGCGSGYHLWRMIGAGAHLAVGIDPTQLFLCQ FEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYHRRSPLEHLWQLKDQLVN EGELVLETLVIDGDENTVLVPGDRYAQMRNVYFIPSAPALKKWLEKCGFIDVRIADVC VTTTEEQRRTEWMVTESLADFLDPNDRSKTVEGYPAPQRAVLIARKP" misc_feature 1999815..2000780 /gene="yecP" /locus_tag="STM1906" /note="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB; Region: PRK15068" /db_xref="CDD:237898" misc_feature order(2000199..2000219,2000268..2000273,2000349..2000357, 2000400..2000402) /gene="yecP" /locus_tag="STM1906" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(2001022..2001779) /gene="cutC" /locus_tag="STM1907" /db_xref="GeneID:1253428" CDS complement(2001022..2001768) /gene="cutC" /locus_tag="STM1907" /note="similar to E. coli copper homeostasis protein (AAC74944.1); Blastp hit to AAC74944.1 (146 aa), 80% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="copper homeostasis protein" /protein_id="NP_460864.1" /db_xref="GeneID:1253428" /translation="MALLEICCYSMECALTAQRNGADRIELCAAPKEGGLTPSFGVLR SVREHITIPVHPIIRPRGGDFYYTDGEFAAMLEDIRLVRELGFPGLVTGVLTVDGDVD MSRMEKIMAAAGPLAVTFHRAFDMCANPFNALKNLADAGVARVLTSGQKADAAQGLSI IMELIAQGDAPTIMAGAGVRANNLQNFLDAGVREVHSSAGVLLPSPMRYRNQGLSMSA DIQADEYSRYRVEGAAVAEMKGIIVRHQAK" misc_feature complement(2001025..2001768) /gene="cutC" /locus_tag="STM1907" /note="copper homeostasis protein CutC; Provisional; Region: PRK11572" /db_xref="CDD:183208" regulatory complement(2001774..2001779) /regulatory_class="ribosome_binding_site" /gene="cutC" /locus_tag="STM1907" /note="putative RBS for cutC; RegulonDB:STMS1H002069" gene complement(2001788..2002374) /gene="yecM" /locus_tag="STM1908" /db_xref="GeneID:1253429" CDS complement(2001788..2002357) /gene="yecM" /locus_tag="STM1908" /note="similar to E. coli orf, hypothetical protein (AAC74945.1); Blastp hit to AAC74945.1 (190 aa), 84% identity in aa 3 - 190" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460865.1" /db_xref="GeneID:1253429" /translation="MANWQHIDELHDISADLPRFTLAFRELSTRLGLQISALEADHIS LRCHQNTTAERWRRGFEQCGELLSENIINGRPICLFKLHEPVCVEHWRFSVIELPWPG EKRYPHEGWEHIEIVLPGEPETLNARALALLSDEGLSQPGIVVKTSSPQGEHERLPNP TLAVTDGRITVKFHPWSIEAIVASEQAAH" misc_feature complement(2001797..2002357) /gene="yecM" /locus_tag="STM1908" /note="VOC family protein; Region: PRK11700" /db_xref="CDD:236957" regulatory complement(2002369..2002374) /regulatory_class="ribosome_binding_site" /gene="yecM" /locus_tag="STM1908" /note="putative RBS for yecM; RegulonDB:STMS1H002070" gene 2002583..2004327 /gene="argS" /locus_tag="STM1909" /db_xref="GeneID:1253430" regulatory 2002583..2002588 /regulatory_class="ribosome_binding_site" /gene="argS" /locus_tag="STM1909" /note="putative RBS for argS; RegulonDB:STMS1H002071" CDS 2002594..2004327 /gene="argS" /locus_tag="STM1909" /EC_number="6.1.1.19" /note="arginyl-tRNA synthetase. (SW:SYR_SALTY)" /codon_start=1 /transl_table=11 /product="arginine tRNA synthetase" /protein_id="NP_460866.1" /db_xref="GeneID:1253430" /translation="MNIQALLSEKVSQAMIAAGAPADCEPQVRQSAKVQFGDYQANGM MAVAKKLGMAPRQLAEQVLTHLDLSGIASKVEIAGPGFINIFLEPAFLAEQVQQALAS DRLGVSQPTRQTIVVDYSAPNVAKEMHVGHLRSTIIGDAAVRTLEFLGHHVIRANHVG DWGTQFGMLIAWLEKQQQENAGDMALADLEGFYRDAKKHYDEDEAFAERARNYVVKLQ SGDTYFREMWRKLVDITMTQNQITYDRLNVTLTRDDVMGESLYNPMLPGIVADLKAKG LAVESEGATVVFLDEFKNKEGDPMGVIIQKKDGGYLYTTTDIACAKYRYETLHADRVL YYIDSRQHQHLMQAWTIVRKAGYVPDSVPLEHHMFGMMLGKDGKPFKTRAGGTVKLAD LLDEALERARRLVAEKNPDMPADELEKLANAVGIGAVKYADLSKNRTTDYIFDWDNML AFEGNTAPYMQYAYTRVLSVFRKANIDEQALASAPVIISEDREAQLAARLLQFEETLT VVAREGTPHVMCAYLYDVAGLFSGFYEHCPILSAENDAVRNSRLKLAQLTAKTLKLGL DTLGIETVERM" misc_feature 2002594..2004324 /gene="argS" /locus_tag="STM1909" /note="Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: ArgS; COG0018" /db_xref="CDD:439789" gene 2004509..2006387 /locus_tag="STM1910" /db_xref="GeneID:1253431" regulatory 2004509..2004514 /regulatory_class="ribosome_binding_site" /locus_tag="STM1910" /note="putative RBS for STM1910; RegulonDB:STMS1H002073" CDS 2004516..2006387 /locus_tag="STM1910" /note="penicillin-binding protein 2 (PBP-2). (SW:PBP2_SALTY)" /codon_start=1 /transl_table=11 /product="putative penicillin-binding protein" /protein_id="NP_460867.1" /db_xref="GeneID:1253431" /translation="MTFKDFDAEEKLFLRRVIVAFGVVVVCFGILIFNLYNLQIRQHH YYTTRSNENDIKMLPVAPTRGIIYDRNGIPLVRNVTWYDIAVTPYKIADMDALLKQLT PIVDLSPDDISDFRRALKSSSRYRPVVLKNALTDVEIARFAVNQFHFNGVTINSYQDR QYPYGAELAHVLGYVSKINDNDLKALDKKGLAENYAADHNIGKQGIERYYENDLHGKT GYQEVEVDNHGRIVRLLKDVPPIAGKNIHLTLDLHLQEYIESLLAGQRAAVLVEDPHD GSVLAMVSMPSYDPNPFVKGISYQDYGKLLHDKNLPLINRVTQGLYPPASTVKPYMAM SALLCGIITPQTTFFGAPTWTLPGTQRHYRDWKKTGHGMLDVTKAIEESADTFFYQVA YMMGIDRIDTMLSQFGYGKPTGIDLNEEYDGLLPSRAWKQRVHKKAWYQGDTISVGIG QGYWIATPIQMVKAMVALINNGKVIAPHLLLNEESGKTVVPYRPSGTPAQIADPASPY WGLVRQAMYGMANAPNGTGYKFFHTAPYGIAAKSGTSQVFSLKENQTYNAKMIPIRLR DHVFYTAFAPYKNPKVAIALILENGGSDGVTAAPIMRKILDHLFDPQADTTQPDQAP" misc_feature 2004522..2006384 /locus_tag="STM1910" /note="penicillin-binding protein 2; Provisional; Region: PRK10795" /db_xref="CDD:236761" gene complement(2006441..2007586) /locus_tag="STM1911" /db_xref="GeneID:1253432" CDS complement(2006441..2007580) /locus_tag="STM1911" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460868.1" /db_xref="GeneID:1253432" /translation="MMVYPVKHSPLLRQPEHFIARDELKALVQKVTHNLVNIKDETGE FLLRLDDGRVIDTKGWAGWEWTHGVGLYGMYHYYQQTGDQTMRKIIDDWFADRFAEGA TTKNVNTMAPFLTLAYRYEETRNPAYLPWLETWAEWAMNEMPRTDHGGMQHITLAEEN HQQMWDDTLMMTVLPLAKIGKLLNRPEYVEEATYQFLLHVQNLMDKETGLWFHGWSYD GHHNFANARWARGNSWLTIVIPDFLELLDLPENNAVRRYLVQVLNAQIAALAKCQDES GLWHTLLDDPHSYLEASATAGFAYGILKAVRKRYVERHYAQVAEKAIRGIVKHISPEG ELLQTSFGTGMGHDLDFYRHIPLTSMPYGQAMAMLCLTEYLRNYF" misc_feature complement(2006453..2007436) /locus_tag="STM1911" /note="Rhamnogalacturonyl hydrolase YesR [Carbohydrate transport and metabolism]; Region: YesR; COG4225" /db_xref="CDD:443369" regulatory complement(2007581..2007586) /regulatory_class="ribosome_binding_site" /locus_tag="STM1911" /note="putative RBS for STM1911; RegulonDB:STMS1H002074" gene complement(2007817..2008219) /gene="flhE" /locus_tag="STM1912" /db_xref="GeneID:1253433" CDS complement(2007817..2008209) /gene="flhE" /locus_tag="STM1912" /note="flagellar protein FLHE precursor. (SW:FLHE_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar protein" /protein_id="NP_460869.1" /db_xref="GeneID:1253433" /translation="MRKWLALLLFPLTVQAAGEGAWQDSGMGVTLNYRGVSASSSPLS ARQPVSGVMTLVAWRYELNGPTPAGLRVRLCSQSRCVELDGQSGTTHGFAHVPAVEPL RFVWEVPGGGRLIPALKVRSNQVIVNYR" misc_feature complement(2007820..2008128) /gene="flhE" /locus_tag="STM1912" /note="Flagellar protein FlhE; Region: FlhE; pfam06366" /db_xref="CDD:428903" gene complement(2008209..2010300) /gene="flhA" /locus_tag="STM1913" /db_xref="GeneID:1253434" CDS complement(2008209..2010287) /gene="flhA" /locus_tag="STM1913" /note="possible export of flagellar proteins; flagellar biosynthesis protein FLHA. (SW:FLHA_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460870.1" /db_xref="GeneID:1253434" /translation="MANLVAMLRLPSNLKSTQWQILAGPILILLILSMMVLPLPAFIL DLLFTFNIALSIMVLLVAMFTQRTLDFAAFPTILLFTTLLRLALNVASTRIILMEGHT GAAAAGKVVEAFGHFLVGGNFAIGIVVFIILVIINFMVITKGAGRIAEVGARFVLDGM PGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFVRGDAIAGILIMVI NVVGGLLVGVLQHGMSIGSAAESYTLLTIGDGLVAQIPALVISTAAGVIVTRVSTDQD VGEQMVGQLFSNPRVMLLAAAVLGLLGMVPGMPNLVFLLFTAALLGLAWWLRGREEKA PEEPQPVKMPENNSVVEATWNDVQLEDSLGMEVGYRLIPMVDFQQDGELLGRIRSIRK KFAQDMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLAINPGTAAGTLP GEKTVDPAFGLDAIWIESALKEQAQIQGFTVVEASTVVATHLNHLIGQFSAELFGRQE AQQLLDRVSQEMPKLTEDLVPGVVTLTTLHKVLQNLLAEKVPIRDMRTILETLAEHAP LQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLLLQALQGGGGLEPGL ADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSNLELSDNRH IRMTATIGGK" misc_feature complement(2008215..2010284) /gene="flhA" /locus_tag="STM1913" /note="flagellar type III secretion system protein FlhA; Region: flhA; PRK06012" /db_xref="CDD:235672" regulatory complement(2008214..2008219) /regulatory_class="ribosome_binding_site" /gene="flhE" /locus_tag="STM1912" /note="putative RBS for flhE; RegulonDB:STMS1H002075" gene complement(2010280..2011444) /gene="flhB" /locus_tag="STM1914" /db_xref="GeneID:1253435" CDS complement(2010280..2011431) /gene="flhB" /locus_tag="STM1914" /note="flagellar biosynthetic protein FLHB. (SW:FLHB_SALTY)" /codon_start=1 /transl_table=11 /product="putative part of export apparatus for flagellar proteins" /protein_id="NP_460871.1" /db_xref="GeneID:1253435" /translation="MAEESDDDKTEAPTPHRLEKAREEGQIPRSRELTSLLILLVGVC IIWFGGESLARQLAGMLSAGLHFDHRMVNDPNLILGQIILLIKAAMMALLPLIAGVVL VALISPVMLGGLIFSGKSLQPKFSKLNPLPGIKRMFSAQTGAELLKAVLKSTLVGCVT GFYLWHHWPQMMRLMAESPIVAMGNALDLVGLCALLVVLGVIPMVGFDVFFQIFSHLK KLRMSRQDIRDEFKESEGDPHVKGKIRQMQRAAAQRRMMEDVPKADVIVTNPTHYSVA LQYDENKMSAPKVVAKGAGLIALRIREIGAEHRVPTLEAPPLARALYRHAEIGQQIPG QLYAAVAEVLAWVWQLKRWRLAGGQRPPQPENLPVPEALDFMNEKNTDG" misc_feature complement(2010283..2011431) /gene="flhB" /locus_tag="STM1914" /note="flagellar type III secretion system protein FlhB; Region: flhB; cl19167" /db_xref="CDD:473144" regulatory complement(2010295..2010300) /regulatory_class="ribosome_binding_site" /gene="flhB" /locus_tag="STM1914" /note="putative RBS for flhA; RegulonDB:STMS1H002076" regulatory complement(2011439..2011444) /regulatory_class="ribosome_binding_site" /gene="flhB" /locus_tag="STM1914" /note="putative RBS for flhB; RegulonDB:STMS1H002077" gene complement(2011625..2012281) /gene="cheZ" /locus_tag="STM1915" /db_xref="GeneID:1253436" CDS complement(2011625..2012269) /gene="cheZ" /locus_tag="STM1915" /note="CheY protein phophatase; chemotaxis protein CHEZ. (SW:CHEZ_SALTY)" /codon_start=1 /transl_table=11 /product="chemotactic response protein" /protein_id="NP_460872.1" /db_xref="GeneID:1253436" /translation="MMQPSIKPADEGSAGDIIARIGSLTRMLRDSLRELGLDQAIAEA AEAIPDARDRLDYVVQMTAQAAERALNSVEASQPHQDAMEKEAKALTQRWDEWFDNPI ELSDARELVTDTRQFLRDVPGHTSFTNAQLLDIMMAQDFQDLTGQVIKRMMDVIQEIE RQLLMVLLENIPEQSARPKRENESLLNGPQVDTSKAGVVASQDQVDDLLDSLGF" misc_feature complement(2011628..2012269) /gene="cheZ" /locus_tag="STM1915" /note="chemotaxis regulator CheZ; Provisional; Region: PRK11166" /db_xref="CDD:236868" regulatory complement(2012276..2012281) /regulatory_class="ribosome_binding_site" /gene="cheZ" /locus_tag="STM1915" /note="putative RBS for cheZ; RegulonDB:STMS1H002078" gene complement(2012280..2012684) /gene="cheY" /locus_tag="STM1916" /db_xref="GeneID:1253437" CDS complement(2012280..2012669) /gene="cheY" /locus_tag="STM1916" /note="transmits chemoreceptor signals to flagelllar motor components; chemotaxis protein CHEY. (SW:CHEY_SALTY)" /codon_start=1 /transl_table=11 /product="chemotaxis regulator protein" /protein_id="NP_460873.1" /db_xref="GeneID:1253437" /translation="MADKELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALN KLQAGGFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAG ASGYVVKPFTAATLEEKLNKIFEKLGM" misc_feature complement(2012283..2012669) /gene="cheY" /locus_tag="STM1916" /note="chemotaxis protein CheY; Region: PRK10610" /db_xref="CDD:170568" regulatory complement(2012679..2012684) /regulatory_class="ribosome_binding_site" /gene="cheY" /locus_tag="STM1916" /note="putative RBS for cheY; RegulonDB:STMS1H002079" gene complement(2012687..2013747) /gene="cheB" /locus_tag="STM1917" /db_xref="GeneID:1253438" CDS complement(2012687..2013736) /gene="cheB" /locus_tag="STM1917" /EC_number="3.1.1.61" /note="response regulator for chemotaxis (cheA sensor); protein-glutamate methylesterase. (SW:CHEB_SALTY)" /codon_start=1 /transl_table=11 /product="methyl esterase" /protein_id="NP_460874.1" /db_xref="GeneID:1253438" /translation="MSKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDL IKKFNPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVVMVSSLTGKGSEVTLRALELGAI DFVTKPQLGIREGMLAYSEMIAEKVRTAARARIAAHKPMAAPTTLKAGPLLSSEKLIA IGASTGGTEAIRHVLQPLPLSSPAVIITQHMPPGFTRSFAERLNKLCQISVKEAEDGE RVLPGHAYIAPGDKHMELARSGANYQIKIHDGPPVNRHRPSVDVLFHSVAKHAGRNAV GVILTGMGNDGAAGMLAMYQAGAWTIAQNEASCVVFGMPREAINMGGVSEVVDLSQVS QQMLAKISAGQAIRI" misc_feature complement(2012702..2013736) /gene="cheB" /locus_tag="STM1917" /note="chemotaxis-specific protein-glutamate methyltransferase CheB; Region: PRK00742" /db_xref="CDD:234828" gene complement(2013733..2014607) /gene="cheR" /locus_tag="STM1918" /db_xref="GeneID:1253439" CDS complement(2013733..2014599) /gene="cheR" /locus_tag="STM1918" /EC_number="2.1.1.80" /note="response regulator for chemotaxis; chemotaxis protein methyltransferase. (SW:CHER_SALTY)" /codon_start=1 /transl_table=11 /product="glutamate methyltransferase" /protein_id="NP_460875.1" /db_xref="GeneID:1253439" /translation="MTSSLPSGQTSVLLQMTQRLALSDAHFRRICQLIYQRAGIVLAD HKRDMVYNRLVRRLRALGLDDFGRYLSMLEANQNSAEWQAFINALTTNLTAFFREAHH FPILAEHARRRHGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVL EKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQY NVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHSENFSNLVREFSLR GQTVYALSKDKA" misc_feature complement(2013739..2014599) /gene="cheR" /locus_tag="STM1918" /note="protein-glutamate O-methyltransferase CheR; Region: PRK10611" /db_xref="CDD:236725" regulatory complement(2013742..2013747) /regulatory_class="ribosome_binding_site" /gene="cheR" /locus_tag="STM1918" /note="putative RBS for cheB; RegulonDB:STMS1H002080" regulatory complement(2014602..2014607) /regulatory_class="ribosome_binding_site" /gene="cheR" /locus_tag="STM1918" /note="putative RBS for cheR; RegulonDB:STMS1H002081" gene complement(2014753..2016428) /gene="cheM" /locus_tag="STM1919" /db_xref="GeneID:1253440" CDS complement(2014753..2016414) /gene="cheM" /locus_tag="STM1919" /note="aspartate sensor-receptor; methyl-accepting chemotaxis protein II (MCP-II). (SW:MCP2_SALTY)" /codon_start=1 /transl_table=11 /product="methyl accepting chemotaxis protein II" /protein_id="NP_460876.1" /db_xref="GeneID:1253440" /translation="MFNRIRVVTMLMMVLGVFALLQLVSGGLLFSSLQHNQQGFVISN ELRQQQSELTSTWDLMLQTRINLSRSAARMMMDASNQQSSAKTDLLQNAKTTLAQAAA HYANFKNMTPLPAMAEASANVDEKYQRYQAALAELIQFLDNGNMDAYFAQPTQGMQNA LGEALGNYARVSENLYRQTFDQSAHDYRFAQWQLGVLAVVLVLILMVVWFGIRHALLN PLARVITHIREIASGDLTKTLTVSGRNEIGELAGTVEHMQRSLIDTVTQVREGSDAIY SGTSEIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQNADNARQASQLAQSASET ARHGGKVVDGVVNTMHEIADSSKKIADIISVIDGIAFQTNILALNAAVEAARAGEQGR GFAVVAGEVRNLASRSAQAAKEIKALIEDSVSRVDTGSVLVESAGETMTDIVNAVTRV TDIMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQ AVSAFRLASRPLAVNKPEMRLSVNAQSGNTPQSLAARDDANWETF" misc_feature complement(2014756..2016414) /gene="cheM" /locus_tag="STM1919" /note="methyl-accepting chemotaxis protein II; Provisional; Region: PRK15048" /db_xref="CDD:185008" misc_feature complement(order(2014951..2014953,2014960..2014965, 2014972..2014974,2014981..2014986,2014990..2014995, 2015002..2015007,2015011..2015016,2015023..2015025, 2015032..2015037,2015044..2015046,2015053..2015058, 2015065..2015070,2015074..2015079,2015086..2015088, 2015095..2015100,2015107..2015109,2015116..2015121, 2015158..2015163,2015170..2015175,2015179..2015184, 2015191..2015196,2015203..2015205,2015212..2015217, 2015224..2015226,2015233..2015235,2015245..2015247, 2015266..2015268,2015275..2015277,2015287..2015289, 2015296..2015301,2015308..2015310,2015317..2015319, 2015326..2015331,2015338..2015343,2015350..2015352, 2015359..2015364,2015368..2015370,2015380..2015385, 2015389..2015394,2015401..2015403,2015410..2015415, 2015422..2015427,2015434..2015436,2015443..2015448, 2015455..2015457,2015464..2015469,2015473..2015478, 2015485..2015487,2015494..2015499,2015506..2015511)) /gene="cheM" /locus_tag="STM1919" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature complement(2015200..2015301) /gene="cheM" /locus_tag="STM1919" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" regulatory complement(2016423..2016428) /regulatory_class="ribosome_binding_site" /gene="cheM" /locus_tag="STM1919" /note="putative RBS for cheM; RegulonDB:STMS1H002082" gene complement(2016651..2017165) /gene="cheW" /locus_tag="STM1920" /db_xref="GeneID:1253441" CDS complement(2016651..2017154) /gene="cheW" /locus_tag="STM1920" /note="regulation; chemotaxis protein CHEW. (SW:CHEW_SALTY)" /codon_start=1 /transl_table=11 /product="purine-binding chemotaxis protein" /protein_id="NP_460877.1" /db_xref="GeneID:1253441" /translation="MTGMSNVSKLAGEPSGQEFLVFTLGNEEYGIDILKVQEIRGYDQ VTRIANTPAFIKGVTNLRGVIVPIVDLRVKFCEGDVEYDDNTVVIVLNLGQRVVGIVV DGVSDVLSLTAEQIRPAPEFAVTLSTEYLTGLGALGERMLILVNIEKLLNSEEMALLD IAASHVA" misc_feature complement(2016654..2017154) /gene="cheW" /locus_tag="STM1920" /note="chemotaxis protein CheW; Region: PRK10612" /db_xref="CDD:182587" misc_feature complement(order(2016690..2016713,2016870..2016872, 2016876..2016878,2016960..2016977)) /gene="cheW" /locus_tag="STM1920" /note="putative CheA interaction surface [active]" /db_xref="CDD:238374" regulatory complement(2017160..2017165) /regulatory_class="ribosome_binding_site" /gene="cheW" /locus_tag="STM1920" /note="putative RBS for cheW; RegulonDB:STMS1H002083" gene complement(2017175..2019201) /gene="cheA" /locus_tag="STM1921" /db_xref="GeneID:1253442" CDS complement(2017175..2019190) /gene="cheA" /locus_tag="STM1921" /EC_number="2.7.3.-" /note="transduces signal between chemo- signal receptors and CheB and CheY; chemotaxis protein CHEA. (SW:CHEA_SALTY)" /codon_start=1 /transl_table=11 /product="sensory histitine protein kinase" /protein_id="NP_460878.1" /db_xref="GeneID:1253442" /translation="MSMDISDFYQTFFDEADELLADMEQHLLDLVPESPDAEQLNAIF RAAHSIKGGAGTFGFTILQETTHLMENLLDEARRGEMQLNTDIINLFLETKDIMQEQL DAYKNSEEPDAASFEYICNALRQLALEAKGETTPAVVETAALSAAIQEESVAETESPR DESKLRIVLSRLKANEVDLLEEELGNLATLTDVVKGADSLSATLDGSVAEDDIVAVLC FVIEADQIAFEKVVAAPVEKAQEKTEVAPVAPPAVVAPAAKSAAHEHHAGREKPARER ESTSIRVAVEKVDQLINLVGELVITQSMLAQRSNELDPVNHGDLITSMGQLQRNARDL QESVMSIRMMPMEYVFSRFPRLVRDLAGKLGKQVELTLVGSSTELDKSLIERIIDPLT HLVRNSLDHGIEMPEKRLEAGKNVVGNLILSAEHQGGNICIEVTDDGAGLNRERILAK AMSQGMAVNENMTDDEVGMLIFAPGFSTAEQVTDVSGRGVGMDVVKRNIQEMGGHVEI QSKQGSGTTIRILLPLTLAILDGMSVRVAGEVFILPLNAVMESLQPREEDLHPLAGGE RVLEVRGEYLPLVELWKVFDVDGAKTEATQGIVVILQSAGRRYALLVDQLIGQHQVVV KNLESNYRKVPGISAATILGDGSVALIVDVSALQGLNREQRMAITAA" misc_feature complement(2017178..2019184) /gene="cheA" /locus_tag="STM1921" /note="chemotaxis protein CheA; Provisional; Region: PRK10547" /db_xref="CDD:236712" gene complement(2019195..2020132) /gene="motB" /locus_tag="STM1922" /db_xref="GeneID:1253443" CDS complement(2019195..2020124) /gene="motB" /locus_tag="STM1922" /note="linking torque machinery to cell wall; chemotaxisMOTB protein. (SW:MOTB_SALTY)" /codon_start=1 /transl_table=11 /product="enables flagellar motor rotation" /protein_id="NP_460879.1" /db_xref="GeneID:1253443" /translation="MKNQAHPIVVVKRRRHKPHGGGAHGSWKIAYADFMTAMMAFFLV MWLISISSPKELIQIAEYFRTPLATAVTGGNRIANSESPIPGGGDDYTQQQGEVEKQP NIDELKKRMEQSRLNKLRGDLDQLIESDPKLRALRPHLKIDLVQEGLRIQIIDSQNRP MFKTGSAEVEPYMRDILRAIAPVLNGIPNRISLAGHTDDFPYANGEKGYSNWELSADR ANASRRELVAGGLDNGKVLRVVGMAATMRLSDRGPDDAINRRISLLVLNKQAEQAILH ENAESQNEPVSVLQQPAAAPPASVPTSPKAEPR" misc_feature complement(2019198..2020124) /gene="motB" /locus_tag="STM1922" /note="motility protein MotB; Region: motB; PRK09041" /db_xref="CDD:236365" regulatory complement(2019196..2019201) /regulatory_class="ribosome_binding_site" /gene="motB" /locus_tag="STM1922" /note="putative RBS for cheA; RegulonDB:STMS1H002084" gene complement(2020121..2021020) /gene="motA" /locus_tag="STM1923" /db_xref="GeneID:1253444" CDS complement(2020121..2021008) /gene="motA" /locus_tag="STM1923" /note="torque generator; chemotaxis MOTA protein). (SW:MOTA_SALTY)" /codon_start=1 /transl_table=11 /product="proton conductor component of motor" /protein_id="NP_460880.1" /db_xref="GeneID:1253444" /translation="MLILLGYLVVIGTVFGGYVMTGGHLGALYQPAELVIIGGAGIGA FIVGNNGKAIKGTMKAIPLLFRRSKYTKSMYMDLLALLYRLMAKSRQQGMFSLERDIE NPKESEIFASYPRILADAVMLDFIVDYLRLIISGNMNTFEIEALMDEEIETHESEAEV PANSLAMVGDSLPAFGIVAAVMGVVHALASADRPAAELGALIAHAMVGTFLGILLAYG FISPLATVLRQKSAETTKMMQCVKITLLSNLNGYAPPIAVEFGRKTLYSSERPSFIEL EEHVRAVRNPNQQQTTEEA" misc_feature complement(2020160..2021008) /gene="motA" /locus_tag="STM1923" /note="flagellar motor stator protein MotA; Region: PRK09110" /db_xref="CDD:181655" regulatory complement(2020127..2020132) /regulatory_class="ribosome_binding_site" /gene="motA" /locus_tag="STM1923" /note="putative RBS for motB; RegulonDB:STMS1H002085" regulatory complement(2021015..2021020) /regulatory_class="ribosome_binding_site" /gene="motA" /locus_tag="STM1923" /note="putative RBS for motA; RegulonDB:STMS1H002086" gene complement(2021133..2021723) /gene="flhC" /locus_tag="STM1924" /db_xref="GeneID:1253445" CDS complement(2021133..2021717) /gene="flhC" /locus_tag="STM1924" /note="acts on class 2 operons; flagellar transcriptional activator FLHC. (SW:FLHC_SALTY)" /codon_start=1 /transl_table=11 /product="regulator of flagellar biosynthesis" /protein_id="NP_460881.3" /db_xref="GeneID:1253445" /translation="MIMSEKSIVQEARDIQLAMELINLGARLQMLESETQLSRGRLIR LYKELRGSPPPKGMLPFSTDWFMTWEQNIHASMFCNAWQFLLKTGLCSGVDAVIKAYR LYLEQCPQPPEGPLLALTRAWTLVRFVESGLLELSSCNCCGGNFITHAHQPVGSFACS LCQPPSRAVKRRKLSRDAADIIPQLLDEQIEQAV" misc_feature complement(2021151..2021711) /gene="flhC" /locus_tag="STM1924" /note="flagellar transcriptional regulator FlhC; Region: PRK12722" /db_xref="CDD:237181" gene complement(2021714..2022215) /gene="flhD" /locus_tag="STM1925" /db_xref="GeneID:1253446" CDS complement(2021714..2022064) /gene="flhD" /locus_tag="STM1925" /note="acts on class 2 operons; flagellar transcriptional activator FLHD. (SW:FLHD_SALTY)" /codon_start=1 /transl_table=11 /product="regulator of flagellar biosynthesis" /protein_id="NP_460882.1" /db_xref="GeneID:1253446" /translation="MGTMHTSELLKHIYDINLSYLLLAQRLIVQDKASAMFRLGINEE MANTLGALTLPQMVKLAETNQLVCHFRFDDHQTITRLTQDSRVDDLQQIHTGIMLSTR LLNEVDDTARKKRA" misc_feature complement(2021744..2022055) /gene="flhD" /locus_tag="STM1925" /note="flagellar transcriptional regulator FlhD; Region: PRK02909" /db_xref="CDD:179497" regulatory complement(2021718..2021723) /regulatory_class="ribosome_binding_site" /gene="flhD" /locus_tag="STM1925" /note="putative RBS for flhC; RegulonDB:STMS1H002087" regulatory complement(2022072..2022077) /regulatory_class="ribosome_binding_site" /gene="flhD" /locus_tag="STM1925" /note="putative RBS for flhD; RegulonDB:STMS1H002088" regulatory complement(2022188..2022196) /regulatory_class="minus_10_signal" /gene="flhD" /locus_tag="STM1925" /note="putative -10_signal for flhD; RegulonDB:STMLTH004518" regulatory complement(2022207..2022215) /regulatory_class="minus_35_signal" /gene="flhD" /locus_tag="STM1925" /note="putative -35_signal for flhD; RegulonDB:STMLTH004518" protein_bind complement(2022269..2022279) /note="putative binding site for OmpR, RegulonDB: STMS1H000328" /bound_moiety="OmpR" protein_bind complement(2022325..2022335) /note="putative binding site for OmpR, RegulonDB: STMS1H000324" /bound_moiety="OmpR" gene 2022735..2022854 /locus_tag="STM1926" /db_xref="GeneID:1253447" regulatory 2022735..2022740 /regulatory_class="ribosome_binding_site" /locus_tag="STM1926" /note="putative RBS for STM1926; RegulonDB:STMS1H002089" CDS 2022738..2022854 /locus_tag="STM1926" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_448342.1" /db_xref="GeneID:1253447" /translation="MINYDVLHINVALAHCRNAINRVKLKHNLIFLQSRSEL" gene 2022839..2023279 /gene="yecG" /locus_tag="STM1927" /db_xref="GeneID:1253448" regulatory 2022839..2022844 /regulatory_class="ribosome_binding_site" /locus_tag="STM1926" /note="putative RBS for yecG; RegulonDB:STMS1H002090" CDS 2022851..2023279 /gene="yecG" /locus_tag="STM1927" /note="hypothetical 17.1 Kda protein in flhD-otsA intergenic region. (SW:YECG_SALTY)" /codon_start=1 /transl_table=11 /product="putative universal stress protein" /protein_id="NP_460884.1" /db_xref="GeneID:1253448" /translation="MSYTHILVAVAVTPESHQLLAKAVSIARPVQAKVSLITLASDPE LYNQFAAPMMEDLRAVMHEETENFLKMLGEKADYPIEQTFIASGELSQHILAVCRKHH VDLVICGNHNHSFFSRASCSAKSVVSASQVDVLLVPLAGD" misc_feature 2022851..2023276 /gene="yecG" /locus_tag="STM1927" /note="universal stress protein UspC; Provisional; Region: PRK10116" /db_xref="CDD:182248" gene complement(2023297..2024874) /gene="otsA" /locus_tag="STM1928" /db_xref="GeneID:1253449" CDS complement(2023297..2024718) /gene="otsA" /locus_tag="STM1928" /EC_number="2.4.1.15" /note="similar to E. coli trehalose-6-phosphate synthase (AAC74966.1); Blastp hit to AAC74966.1 (474 aa), 88% identity in aa 1 - 474" /codon_start=1 /transl_table=11 /product="trehalose-6-phosphate synthase" /protein_id="NP_460885.1" /db_xref="GeneID:1253449" /translation="MSRLVVVSNRIAPPDNKGGAGGLAVGVLGALKAAGGLWFGWSGE TGNEDEPLKKVTKGNITWASFNLSEQDYEDYYCQFSNAVLWPAFHYRLDLVQFQRPAW EGYMRVNALLADKLLPLIKENDIIWVHDYHLLPFASELRKRGVNNRIGFFLHIPFPTP EIFNALPPHDELLEQLCDFDLLGFQTENDRLAFLDSLSSQTRVTTRSGKQHIAWGKDF QTEVYPIGIEPDEIALQAAGPLPPKLAQLKAELKNVKNIFSVERLDYSKGLPERFLAY EALLENYPQHRGKIRYTQIAPTSRGEVQAYQDIRHQLETEAGRINGKYGQLGWTPLYY LNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKEFVAAQDPANPGVLVLSQFAGAAN ELTSALIVNPYDRDDVAAALNRALTMPLAERISRHAEMLDVIVKNDINRWQERFIHDL KEVTPRSPERQQQNNVATFPKLA" misc_feature complement(2023300..2024718) /gene="otsA" /locus_tag="STM1928" /note="trehalose-6-phosphate synthase; Provisional; Region: PRK10117" /db_xref="CDD:182249" gene complement(2024693..2025552) /gene="otsB" /locus_tag="STM1929" /db_xref="GeneID:1253450" CDS complement(2024693..2025496) /gene="otsB" /locus_tag="STM1929" /EC_number="3.1.3.12" /note="similar to E. coli trehalose-6-phosphate phophatase, biosynthetic (AAC74967.1); Blastp hit to AAC74967.1 (266 aa), 72% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="trehalose-6-phosphate phophatase, biosynthetic" /protein_id="NP_460886.1" /db_xref="GeneID:1253450" /translation="MAEPLTVSPELTANYAYFFDLDGTLAEIKPHPDQVVVPHKILQL LDRLAAHNAGALALISGRSMTELDALAKPFRFPLAGVHGAERRDINGKTHIVRLPEAV VREVEALLRSTLVALPGTELESKGMAFALHYRQAPEHEAALLALAQHVTQHWPQLALQ PGKCVVEIKPKGTNKGEAIAAFMQEAPFAGRIPVFVGDDLTDEAGFGVVNHAGGISVK VGVGATQAAWRLESVPDVWRWLEQINYPQQEQQVMNNRRDGYESFSRSI" misc_feature complement(2024696..2025496) /gene="otsB" /locus_tag="STM1929" /note="trehalose-6-phosphate phosphatase; Provisional; Region: PRK10187" /db_xref="CDD:182291" misc_feature complement(order(2024891..2024896,2024903..2024908, 2024972..2024974,2024996..2024998,2025002..2025004, 2025008..2025010,2025095..2025097,2025101..2025103, 2025107..2025109,2025122..2025124,2025128..2025130, 2025251..2025253,2025311..2025319,2025401..2025403, 2025413..2025418,2025425..2025439)) /gene="otsB" /locus_tag="STM1929" /note="active site" /db_xref="CDD:319767" misc_feature complement(order(2024891..2024896,2024900..2024908, 2024972..2024974,2024990..2024992,2024996..2024998, 2025002..2025004,2025008..2025010,2025101..2025103, 2025107..2025109,2025122..2025124,2025128..2025130, 2025251..2025256,2025287..2025292,2025305..2025307, 2025311..2025319,2025401..2025403,2025413..2025415, 2025425..2025439)) /gene="otsB" /locus_tag="STM1929" /note="active site pocket [active]" /db_xref="CDD:319767" regulatory complement(2024727..2024732) /regulatory_class="ribosome_binding_site" /gene="otsB" /locus_tag="STM1929" /note="putative RBS for otsA; RegulonDB:STMS1H002091" regulatory complement(2024848..2024856) /regulatory_class="minus_10_signal" /gene="otsB" /locus_tag="STM1929" /note="putative -10_signal for otsA; RegulonDB:STMLTH004519" regulatory complement(2024866..2024874) /regulatory_class="minus_35_signal" /gene="otsB" /locus_tag="STM1929" /note="putative -35_signal for otsA; RegulonDB:STMLTH004519" regulatory complement(2025503..2025508) /regulatory_class="ribosome_binding_site" /gene="otsB" /locus_tag="STM1929" /note="putative RBS for otsB; RegulonDB:STMS1H002092" regulatory complement(2025525..2025533) /regulatory_class="minus_10_signal" /gene="otsB" /locus_tag="STM1929" /note="putative -10_signal for otsB; RegulonDB:STMLTH004520" regulatory complement(2025544..2025552) /regulatory_class="minus_35_signal" /gene="otsB" /locus_tag="STM1929" /note="putative -35_signal for otsB; RegulonDB:STMLTH004520" gene complement(2025659..2025900) /locus_tag="STM1930" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1253451" gene complement(2026129..2026693) /gene="araH" /locus_tag="STM1931" /db_xref="GeneID:1253452" CDS complement(2026129..2026686) /gene="araH" /locus_tag="STM1931" /note="similar to E. coli 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis (AAC73527.1); Blastp hit to AAC73527.1 (198 aa), 30% identity in aa 9 - 183" /codon_start=1 /transl_table=11 /product="putative intracellular protease/amidase" /protein_id="NP_460887.1" /db_xref="GeneID:1253452" /translation="MKKVAVLLAPGFEEAEAIVTLDILRRLHIDVETLACAESRAVVS YHDIPMVADSTLSERQQALFDAVVLPGGPQGSANLAANPAVIAFVARHDAAGKLICPI CSAAARVLGAHGLLKGRRYVCSGDLWKAVPEGVYVDAPVVEDGNLISGKGLGHVFDFA LTLSARLLGDDAPVREQAEHIYYPW" misc_feature complement(2026186..2026677) /gene="araH" /locus_tag="STM1931" /note="Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1; Region: GATase1_DJ-1; cd03135" /db_xref="CDD:153229" misc_feature complement(2026378..2026380) /gene="araH" /locus_tag="STM1931" /note="conserved cys residue [active]" /db_xref="CDD:153229" regulatory complement(2026688..2026693) /regulatory_class="ribosome_binding_site" /gene="araH" /locus_tag="STM1931" /note="putative RBS for araH; RegulonDB:STMS1H002094" gene 2027217..2027740 /gene="ftnB" /locus_tag="STM1932" /db_xref="GeneID:1253453" regulatory 2027217..2027222 /regulatory_class="ribosome_binding_site" /gene="ftnB" /locus_tag="STM1932" /note="putative RBS for ftnB; RegulonDB:STMS1H002095" CDS 2027237..2027740 /gene="ftnB" /locus_tag="STM1932" /note="similar to E. coli ferritin-like protein (AAC74972.1); Blastp hit to AAC74972.1 (167 aa), 76% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="ferritin-like protein" /protein_id="NP_460888.1" /db_xref="GeneID:1253453" /translation="MAAVGMVQKLNTPMNLEFYASNLYLHLSEWCSEHSLTGTATFLR TQAQGNVTQMMRMFNFMKNAGATPIVKAIDVPGEELCSLEELFQKTLEDYQQRASTLS RLADEAKALNDASTLDFLHTLEKEQQQDGVLLQTILEEVRSAKRAGLCLAQTDQHLLN VVTYQHH" misc_feature 2027237..2027737 /gene="ftnB" /locus_tag="STM1932" /note="non-heme ferritin-like protein; Region: PRK15022" /db_xref="CDD:184983" misc_feature order(2027285..2027287,2027381..2027386,2027393..2027395, 2027516..2027518,2027612..2027614,2027621..2027626) /gene="ftnB" /locus_tag="STM1932" /note="ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153113" gene complement(2027919..2028565) /locus_tag="STM1933" /db_xref="GeneID:1253454" CDS complement(2027919..2028557) /locus_tag="STM1933" /EC_number="5.3.1.6" /codon_start=1 /transl_table=11 /product="putative ribose 5-phosphate isomerase" /protein_id="NP_460889.1" /db_xref="GeneID:1253454" /translation="MKIALMMENSQASKNAIIYNELSAVANEKGFPVFNVGMCDENDH HLTYIHLGIMASILLNANAVDFVVTGCGTGQGALMSLNIHPGVICGYCIDPADAFLFA QINNGNALSLPFAKGFGWGAELNVRFIFEKAFTGRKGEGYPPERKAPQVRNAGILNQV KAAVVKENYLDTLRAIDPELVKTAVSGPRFQQCLFENGQNKEIEAFVREMLG" misc_feature complement(2027922..2028557) /locus_tag="STM1933" /note="hypothetical protein; Provisional; Region: PRK09273" /db_xref="CDD:181746" regulatory complement(2028560..2028565) /regulatory_class="ribosome_binding_site" /locus_tag="STM1933" /note="putative RBS for STM1933; RegulonDB:STMS1H002096" gene 2028800..2029148 /locus_tag="STM1934" /db_xref="GeneID:1253455" regulatory 2028800..2028805 /regulatory_class="ribosome_binding_site" /locus_tag="STM1934" /note="putative RBS for STM1934; RegulonDB:STMS1H002097" CDS 2028813..2029148 /locus_tag="STM1934" /note="similar to E. coli orf, hypothetical protein (AAC74974.1); Blastp hit to AAC74974.1 (107 aa), 61% identity in aa 1 - 104" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460890.1" /db_xref="GeneID:1253455" /translation="MKPLIFTLSLLALTGCTITRQAQVSEASPISGIVRLTYNQPLFF TSRTDDYVSHGTATRECQQMGYADAVSFGQPVGTCSIYAGSLCLNTRFTLSWQCRGVA VPQIMPLYY" misc_feature 2028888..2029106 /locus_tag="STM1934" /note="YecR-like lipoprotein; Region: YecR; pfam13992" /db_xref="CDD:404813" gene 2029375..2029885 /gene="ftn" /locus_tag="STM1935" /db_xref="GeneID:1253456" regulatory 2029375..2029380 /regulatory_class="ribosome_binding_site" /gene="ftn" /locus_tag="STM1935" /note="putative RBS for ftn; RegulonDB:STMS1H002098" CDS 2029388..2029885 /gene="ftn" /locus_tag="STM1935" /note="similar to E. coli cytoplasmic ferritin (an iron storage protein) (AAC74975.1); Blastp hit to AAC74975.1 (165 aa), 92% identity in aa 1 - 165" /codon_start=1 /transl_table=11 /product="cytoplasmic ferritin" /protein_id="NP_460891.1" /db_xref="GeneID:1253456" /translation="MLKTEMIDKLNEQMNLELYSSLLYQQMSAWCSYHSFEGAAAFLR RHAQEEMTHMQRLFDYLTDTGSLPRIHTVSSPFAEYASLDELFRATYEHEQLITQKIN ELAHAAMTSQDYPTFNFLQWYVAEQHEEEKLFKSIIDKLTLAGKSGEGLYFIDKELST LDTQN" misc_feature 2029388..2029882 /gene="ftn" /locus_tag="STM1935" /note="non-heme ferritin; Region: PRK10304" /db_xref="CDD:182367" misc_feature order(2029436..2029438,2029532..2029537,2029544..2029546, 2029667..2029669,2029763..2029765,2029772..2029777) /gene="ftn" /locus_tag="STM1935" /note="ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153113" gene complement(2029931..2030181) /gene="yecH" /locus_tag="STM1936" /db_xref="GeneID:1253457" CDS complement(2029931..2030170) /gene="yecH" /locus_tag="STM1936" /note="similar to E. coli orf, hypothetical protein (AAC74976.1); Blastp hit to AAC74976.1 (79 aa), 87% identity in aa 1 - 79" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460892.1" /db_xref="GeneID:1253457" /translation="MDSIHGHEVLNMMIESGEQYTHTSLEAAIKARFGERARFHTCSA SDMTAAELVAFLAAKGKFIAVEDGFSTHESKICRH" misc_feature complement(2029934..2030164) /gene="yecH" /locus_tag="STM1936" /note="probable metal-binding protein; Region: matur_matur; TIGR03853" /db_xref="CDD:163565" regulatory complement(2030176..2030181) /regulatory_class="ribosome_binding_site" /gene="yecH" /locus_tag="STM1936" /note="putative RBS for yecH; RegulonDB:STMS1H002099" gene 2030271..2031608 /gene="tyrP" /locus_tag="STM1937" /db_xref="GeneID:1253458" regulatory 2030271..2030279 /regulatory_class="minus_35_signal" /gene="tyrP" /locus_tag="STM1937" /note="putative -35_signal for tyrP; RegulonDB:STMLTH004521" protein_bind 2030289..2030305 /gene="tyrP" /locus_tag="STM1937" /note="putative binding site for TyrR, RegulonDB: STMS1H000390" /bound_moiety="TyrR" regulatory 2030295..2030303 /regulatory_class="minus_10_signal" /gene="tyrP" /locus_tag="STM1937" /note="putative -10_signal for tyrP; RegulonDB:STMLTH004521" protein_bind 2030309..2030333 /gene="tyrP" /locus_tag="STM1937" /note="putative binding site for TyrR, RegulonDB: STMS1H000387" /bound_moiety="TyrR" regulatory 2030380..2030385 /regulatory_class="ribosome_binding_site" /gene="tyrP" /locus_tag="STM1937" /note="putative RBS for tyrP; RegulonDB:STMS1H002100" CDS 2030397..2031608 /gene="tyrP" /locus_tag="STM1937" /note="similar to E. coli tyrosine-specific transport system (AAC74977.1); Blastp hit to AAC74977.1 (403 aa), 88% identity in aa 1 - 403" /codon_start=1 /transl_table=11 /product="HAAAP family tyrosine-specific transport protein" /protein_id="NP_460893.1" /db_xref="GeneID:1253458" /translation="MKNRTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLGLLIGLW ALMCYTALLLLEVYQHVPADTGLGSLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGA GELLASSINNWLGATLSPAAGVLLFTFVAGGVVCVGTSLVDLFNRFLFSAKIIFLVIM LALLTPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMNGNIRRLRWVF MTGSAIPLVAYIFWQLATLGSIDSPTFRGLLASHAGLNGLLQALREVVASPHVELAVH LFADLALATSFLGVALGLFDYLADLFQRRSTVSGRLQTGLITFLPPLAFALFYPRGFV MALGYAGVALAVLALLIPAMLVWQCRKQSPQAGYRVAGGTPALALVFICGIVVIGVQF SIALGFLPDPG" misc_feature 2030397..2031605 /gene="tyrP" /locus_tag="STM1937" /note="tyrosine transporter TyrP; Provisional; Region: PRK15132" /db_xref="CDD:185086" gene complement(2031683..2032361) /gene="yecA" /locus_tag="STM1938" /db_xref="GeneID:1253459" CDS complement(2031683..2032348) /gene="yecA" /locus_tag="STM1938" /note="similar to the C-terminal domain of SecA; similar to E. coli orf, hypothetical protein (AAC74978.1); Blastp hit to AAC74978.1 (221 aa), 81% identity in aa 1 - 221" /codon_start=1 /transl_table=11 /product="putative metal-binding protein" /protein_id="NP_460894.1" /db_xref="GeneID:1253459" /translation="MKMEPLNENELEWLDDVLTKYNTDQAILDVAELDGLITAVLSSP RPIDPEQWLVAIWGGPAYVPRWTSEKEMTRFMDLVFQHMADTAARLEDYPEQFEPLFG LREVDGHELTIVEEWCFGYMRGVSLSDWSDLPDTLKPALEAIALHGTEENFALLDKMS PEAFDKSVDAIRIAALELHAWWMAHPHTTPLQMPIKAEVKVGRNDPCPCGSGKKFKQC CLH" misc_feature complement(2031686..2032348) /gene="yecA" /locus_tag="STM1938" /note="hypothetical protein; Provisional; Region: PRK10396" /db_xref="CDD:236680" regulatory complement(2032356..2032361) /regulatory_class="ribosome_binding_site" /gene="yecA" /locus_tag="STM1938" /note="putative RBS for yecA; RegulonDB:STMS1H002101" gene complement(2032586..2032919) /locus_tag="STM1939" /db_xref="GeneID:1253460" CDS complement(2032586..2032912) /locus_tag="STM1939" /codon_start=1 /transl_table=11 /product="putative glucose-6-phosphate dehydrogenase" /protein_id="NP_460895.1" /db_xref="GeneID:1253460" /translation="MVKRRNLLHFNNGARSERDLGDLVTKVFEKAAKKEPQPLYTFSL PLLSVQDEIRVYCKKKNIKIGYDTLFMEITFSADREAVDELIKHFFTENKLYLRGRFY LSAAVV" regulatory complement(2032914..2032919) /regulatory_class="ribosome_binding_site" /locus_tag="STM1939" /note="putative RBS for STM1939; RegulonDB:STMS1H002102" gene complement(2033125..2034570) /locus_tag="STM1940" /db_xref="GeneID:1253461" CDS complement(2033125..2034564) /locus_tag="STM1940" /codon_start=1 /transl_table=11 /product="putative cell wall-associated hydrolase" /protein_id="NP_460896.1" /db_xref="GeneID:1253461" /translation="MMMQKKTWAVLLIPLCLTACHQTTYRSTAKDEIFTGSYIDPTKT RFPLADYSQSVDKWIPPDSADYTIPVIDNATQQRYFNALKSHYFGMDSEAHSPWNGFY ITALLKKNAAQARDASIKQFLSDGSAYWGENFRLYTSRWKEEVRGNTDTQIDNIYHAS RRGIMVRESLVRALPTDDPLFNDPRQAGEGYPFDNLQMSSLRPGTPVYTLTKSKDQRW QYVVSPAVTGWVHSEDIASTDQKFITQWVLLAHKQLGAFINAPVSVHVAGVYYFTGRP GTILPFRHQRAGQFLIAAPVRGSNGRAFIHWVWLSGNEFTAMPWKMTPENIAVLMKAM YGAPYGWGNFNFYNDCSAEIRSLLMPFGIFLPRHSSAQVEAAGRVVDLSHKSPQMRID YLTRYGKPFTTLVYIPGHIMLYIGNTTMNGQVVPMTYQNIWGLRPNHANSRSIIGEAV FLPLLRFYPESPELISLAGKVLFKLGYIE" misc_feature complement(2034115..2034435) /locus_tag="STM1940" /note="NLPC_P60 stabilising domain, N term; Region: N_NLPC_P60; pfam12912" /db_xref="CDD:432870" misc_feature complement(2033872..2034030) /locus_tag="STM1940" /note="SH3 domain (SH3b1 type); Region: SH3_6; pfam12913" /db_xref="CDD:432871" misc_feature complement(2033305..2033874) /locus_tag="STM1940" /note="Cell wall-associated hydrolase, NlpC_P60 family [Cell wall/membrane/envelope biogenesis]; Region: NlpC; COG0791" /db_xref="CDD:440554" regulatory complement(2034565..2034570) /regulatory_class="ribosome_binding_site" /locus_tag="STM1940" /note="putative RBS for STM1940; RegulonDB:STMS1H002103" gene complement(2034777..2035109) /locus_tag="STM1941" /db_xref="GeneID:1253462" CDS complement(2034777..2035109) /locus_tag="STM1941" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460897.1" /db_xref="GeneID:1253462" /translation="MLICFMPALLKRVGLPVKYTDNAKLFISFINIGIVGCALLLFFI LYEPESAIVTYSFPGELSSSTCDARNFIGYVDENDFAEYIKKVELTRYSMYCLKKTGA GQWSIYAN" gene complement(2035363..2035446) /gene="leuZ" /locus_tag="STM1942" /db_xref="GeneID:1253463" tRNA complement(2035363..2035446) /gene="leuZ" /locus_tag="STM1942" /product="tRNA-Leu" /db_xref="GeneID:1253463" gene complement(2035461..2035531) /gene="cysT" /locus_tag="STM1943" /db_xref="GeneID:1253464" tRNA complement(2035461..2035531) /gene="cysT" /locus_tag="STM1943" /product="tRNA-Cys" /db_xref="GeneID:1253464" gene complement(2035587..2035659) /gene="glyW" /locus_tag="STM1944" /db_xref="GeneID:1253465" tRNA complement(2035587..2035659) /gene="glyW" /locus_tag="STM1944" /product="tRNA-Gly" /db_xref="GeneID:1253465" gene complement(2035810..2036377) /gene="pgsA" /locus_tag="STM1945" /db_xref="GeneID:1253466" CDS complement(2035810..2036358) /gene="pgsA" /locus_tag="STM1945" /EC_number="2.7.8.5" /note="CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase; similar to E. coli phosphatidylglycerophosphate synthetase = CDP-1,2-diacyl-sn-glycero-3-phosphate phosphatidyl transferase (AAC74979.1); Blastp hit to AAC74979.1 (182 aa), 94% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="phosphatidylglycerophosphate synthetase" /protein_id="NP_460898.1" /db_xref="GeneID:1253466" /translation="MQFNIPTLLTLFRVILIPFFVVVFYLPFAWAPMVSALIFCIAAI TDWFDGFLARRWNQSTRFGAFLDPVADKVLVAIAMVLVTEHYHSWWVTLPAATMIARE IIISALREWMAELGKRSSVAVSWIGKVKTTAQMVALAWLLWRPNIWVEYAGIALFFVA AVLTLWSMLQYLSAARGDLLDQ" misc_feature complement(2035813..2036358) /gene="pgsA" /locus_tag="STM1945" /note="CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Region: PRK10832" /db_xref="CDD:182763" regulatory complement(2036372..2036377) /regulatory_class="ribosome_binding_site" /gene="pgsA" /locus_tag="STM1945" /note="putative RBS for pgsA; RegulonDB:STMS1H002105" gene complement(2036415..2038267) /gene="uvrC" /locus_tag="STM1946" /db_xref="GeneID:1253467" CDS complement(2036415..2038247) /gene="uvrC" /locus_tag="STM1946" /note="forms a DNA excision repair enzyme with UvrAB; excinuclease ABC subunit C. (SW:UVRC_SALTY)" /codon_start=1 /transl_table=11 /product="UvrC" /protein_id="NP_460899.1" /db_xref="GeneID:1253467" /translation="MSEIFDAKAFLKTVTSQPGVYRMYDAGGTVIYVGKAKDLKKRLS SYFRSNLASRKTEALVAQIQHIDVTVTHTETEALLLEHNYIKLYQPRYNVLLRDDKSY PFIFLSGDTHPRLAMHRGAKHAKGEYFGPFPNGYAVRETLALLQKIFPIRQCENSVYR NRSRPCLQYQIGRCLGPCVAGLVSEEEYAQQVEYVRLFLSGKDDQVLTQLIARMEKAS QDLAFEEAARIRDQIQAVRRVTEKQFVSNAGDDLDVIGVAFDAGMACVHVLFIRQGKV LGSRSYFPKVPGGTELGEVVETFVGQFYLQGSQMRTLPGEILLDFNLSDKTLLADSLS ELAGRRIHVQTKPRGDRARYLKLARTNAATALITKLSQQSTITQRLSALAAVLKLPAI KRMECFDISHTMGEQTVASCVVFDANGPLRAEYRRYNIAGITPGDDYAAMNQVLRRRY GKAIEESKIPDVILIDGGKGQLAQAKAVFAELDVPWDKHRPLLLGVAKGADRKAGLET LFFEPEGEGFSLPPDSPALHVIQHIRDESHDHAIGGHRKKRAKVKNTSTLETIEGVGP KRRQMLLKYMGGLQGLRNASVEEIAKVPGISQGLAEKIFWSLKH" misc_feature complement(2036418..2038226) /gene="uvrC" /locus_tag="STM1946" /note="excinuclease ABC subunit UvrC; Region: uvrC; PRK00558" /db_xref="CDD:234792" gene complement(2038244..2038914) /gene="uvrY" /locus_tag="STM1947" /db_xref="GeneID:1253468" CDS complement(2038244..2038900) /gene="uvrY" /locus_tag="STM1947" /note="similar to E. coli putative 2-component transcriptional regulator (AAC74981.1); Blastp hit to AAC74981.1 (218 aa), 96% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="putative LuxR/UhpA family response regulator" /protein_id="NP_460900.1" /db_xref="GeneID:1253468" /translation="MINVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCR TNAVDVVLMDMNMPGIGGLEATRKIARSTADIKVIMLTVHTENPLPAKVMQAGAAGYL SKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPAKTETPFASLSERELQIMLM ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLTSQ " misc_feature complement(2038247..2038900) /gene="uvrY" /locus_tag="STM1947" /note="response regulator; Provisional; Region: PRK09483" /db_xref="CDD:236538" regulatory complement(2038262..2038267) /regulatory_class="ribosome_binding_site" /gene="uvrY" /locus_tag="STM1947" /note="putative RBS for uvrC; RegulonDB:STMS1H002106" regulatory complement(2038909..2038914) /regulatory_class="ribosome_binding_site" /gene="uvrY" /locus_tag="STM1947" /note="putative RBS for uvrY; RegulonDB:STMS1H002107" gene 2039208..2039367 /locus_tag="STM1948" /db_xref="GeneID:1253469" regulatory 2039208..2039213 /regulatory_class="ribosome_binding_site" /locus_tag="STM1948" /note="putative RBS for STM1948; RegulonDB:STMS1H002108" CDS 2039212..2039367 /locus_tag="STM1948" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_448360.1" /db_xref="GeneID:1253469" /translation="MHHAATFILWVTPPLFDQKTTTAIFSVAYGILRRLNICYRTFSL KHNEENK" gene 2039353..2039588 /gene="yecF" /locus_tag="STM1949" /db_xref="GeneID:1253470" regulatory 2039353..2039358 /regulatory_class="ribosome_binding_site" /locus_tag="STM1948" /note="putative RBS for yecF; RegulonDB:STMS1H002109" CDS 2039364..2039588 /gene="yecF" /locus_tag="STM1949" /note="similar to E. coli orf, hypothetical protein (AAC74982.1); Blastp hit to AAC74982.1 (74 aa), 87% identity in aa 1 - 74" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460902.1" /db_xref="GeneID:1253470" /translation="MSTPDFSTAENNQELATEVNCLKAMLTLMLQAMGQADAGRVILK MEKQIAQMDDEAQAAVFSSTVKQIKQAYRQ" misc_feature 2039364..2039585 /gene="yecF" /locus_tag="STM1949" /note="DUF2594 family protein; Region: PRK10613" /db_xref="CDD:182588" gene complement(2039655..2040395) /gene="sdiA" /locus_tag="STM1950" /db_xref="GeneID:1253471" CDS complement(2039655..2040377) /gene="sdiA" /locus_tag="STM1950" /note="LuxR/UhpA family; similar to E. coli transcriptional regulator of ftsQAZ gene cluster (AAC74983.1); Blastp hit to AAC74983.1 (240 aa), 71% identity in aa 1 - 240" /codon_start=1 /transl_table=11 /product="transcriptional regulator of ftsQAZ gene cluster" /protein_id="NP_460903.1" /db_xref="GeneID:1253471" /translation="MQENDFFTWRRAMLLRFQEMAAAEDVYTELQYQTQRLEFDYYAL CVRHPVPFTRPKISLRTTYPPAWVTHYQSENYFAIDPVLKPENFRQGHLHWDDVLFHE AKAMWDAAQRFGLRRGVTQCVMLPNRALGFLSFSRSSLRCSSFTYDEVELRLQLLARE SLSALTRFEDDMVMAPEMRFSKREKEILKWTAEGKTSSEIAIILSISENTVNFHQKNM QKKFNAPNKTQIACYAAATGLI" misc_feature complement(2039658..2040377) /gene="sdiA" /locus_tag="STM1950" /note="transcriptional regulator SdiA; Region: PRK10188" /db_xref="CDD:182292" regulatory complement(2040390..2040395) /regulatory_class="ribosome_binding_site" /gene="sdiA" /locus_tag="STM1950" /note="putative RBS for sdiA; RegulonDB:STMS1H002110" gene complement(2040609..2041378) /gene="yecC" /locus_tag="STM1951" /db_xref="GeneID:1253472" CDS complement(2040609..2041361) /gene="yecC" /locus_tag="STM1951" /note="ATPase component; similar to E. coli putative ATP-binding component of a transport system (AAC74984.1); Blastp hit to AAC74984.1 (250 aa), 92% identity in aa 1 - 250" /codon_start=1 /transl_table=11 /product="putative ABC-type polar amino acid transport system" /protein_id="NP_460904.1" /db_xref="GeneID:1253472" /translation="MSAIEVTNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTT LLRCINLLEQPEAGTIKVGDIIIDTARPFSQQKGLIRQLRQHVGFVFQSFNLFPHRTV LENIIEGPVIVKGEPKAEATALARELLAKVGLAGKESRYPRRLSGGQQQRVAIARALA MRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD QGQIVEQGPAKTLFADPQHPRTRQFLEKFLVK" misc_feature complement(2040612..2041361) /gene="yecC" /locus_tag="STM1951" /note="putative amino-acid ABC transporter ATP-binding protein YecC; Provisional; Region: PRK11264" /db_xref="CDD:183063" gene complement(2041358..2042042) /gene="yecS" /locus_tag="STM1952" /db_xref="GeneID:1253473" CDS complement(2041358..2042026) /gene="yecS" /locus_tag="STM1952" /note="permease component; similar to E. coli putative transport system permease protein (former yecC) (AAC74985.1); Blastp hit to AAC74985.1 (222 aa), 93% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="putative ABC-type amino acid transporter" /protein_id="NP_460905.1" /db_xref="GeneID:1253473" /translation="MQESIQLVIESLPYLLKGAVFTLQLSIGGMFFGLLLGFVLALMR MSPLWPVRWLARFYISIFRGTPLIAQLFMIYYGLPQFGIELDPIPAAMIGLSLNTAAY TSETLRAAISAIDKGQWEAAASIGMTPWQTLRRAILPQAARVALPPLSNSFISLVKDT SLAATIQVPELFRQAQLITSRTLEVFTMYLAASLIYWVMATVLSALQNYFENQLNRQE REPK" misc_feature complement(2041367..2042026) /gene="yecS" /locus_tag="STM1952" /note="cystine ABC transporter permease; Region: PRK15100" /db_xref="CDD:185055" misc_feature complement(order(2041415..2041417,2041424..2041429, 2041436..2041441,2041445..2041450,2041457..2041462, 2041490..2041495,2041532..2041537,2041544..2041555, 2041574..2041576,2041583..2041588,2041628..2041630, 2041679..2041681,2041688..2041693,2041703..2041705, 2041709..2041714,2041721..2041723,2041727..2041729, 2041733..2041738,2041802..2041804,2041808..2041813, 2041820..2041849,2041853..2041864,2041892..2041894, 2041907..2041912,2041919..2041924)) /gene="yecS" /locus_tag="STM1952" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2041538..2041555,2041802..2041846)) /gene="yecS" /locus_tag="STM1952" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(2041460..2041462,2041490..2041492, 2041499..2041501,2041535..2041537,2041751..2041753, 2041802..2041804)) /gene="yecS" /locus_tag="STM1952" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(2041607..2041609,2041619..2041624, 2041640..2041678)) /gene="yecS" /locus_tag="STM1952" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(2041373..2041378) /regulatory_class="ribosome_binding_site" /gene="yecS" /locus_tag="STM1952" /note="putative RBS for yecC; RegulonDB:STMS1H002111" regulatory complement(2042037..2042042) /regulatory_class="ribosome_binding_site" /gene="yecS" /locus_tag="STM1952" /note="putative RBS for yecS; RegulonDB:STMS1H002112" gene complement(2042047..2043044) /gene="yedO" /locus_tag="STM1953" /db_xref="GeneID:1253474" CDS complement(2042047..2043033) /gene="yedO" /locus_tag="STM1953" /EC_number="3.5.99.7" /note="similar to E. coli putative 1-aminocyclopropane-1-carboxylate deaminase (AAC74986.1); Blastp hit to AAC74986.1 (360 aa), 90% identity in aa 33 - 360" /codon_start=1 /transl_table=11 /product="putative 1-cyclopropane-carboxylate deaminase" /protein_id="NP_460906.1" /db_xref="GeneID:1253474" /translation="MPLHHLTRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTP IAMGGNKLRKLEFLVADALREGADTLITAGAIQSNHVRQTAAVAAKLGLHCVALLENP IGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGG SSALGAMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGV TVSRSVAEQKPKVIALQQAIAGQLALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLA SLEGVLLDPVYTGKAMAGLIDGISQKRFNDDGPILFIHTGGAPALFAYHPHV" misc_feature complement(2042050..2043024) /gene="yedO" /locus_tag="STM1953" /note="D-cysteine desulfhydrase; Validated; Region: PRK03910" /db_xref="CDD:179673" misc_feature complement(order(2042083..2042091,2042440..2042454, 2042797..2042799,2042872..2042874,2042881..2042886)) /gene="yedO" /locus_tag="STM1953" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107210" misc_feature complement(2042881..2042883) /gene="yedO" /locus_tag="STM1953" /note="catalytic residue [active]" /db_xref="CDD:107210" regulatory complement(2043039..2043044) /regulatory_class="ribosome_binding_site" /gene="yedO" /locus_tag="STM1953" /note="putative RBS for yedO; RegulonDB:STMS1H002113" gene complement(2043187..2043998) /gene="fliY" /locus_tag="STM1954" /db_xref="GeneID:1253475" CDS complement(2043187..2043987) /gene="fliY" /locus_tag="STM1954" /note="similar to E. coli putative periplasmic binding transport protein (AAC74987.1); Blastp hit to AAC74987.1 (266 aa), 92% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="putative periplasmic binding transport protein" /protein_id="NP_460907.1" /db_xref="GeneID:1253475" /translation="MKLALLGRQALMGVMAVALVAGMSAKSFADEGLLNKVKERGTLL VGLEGTYPPFSFQGEDGKLTGFEVDFAEALAKHLGVKASLKPTKWDGMLASLDAKRID VVINQVTISDVRKKKYDFSTPYTVSGIQALVKKGNEGTIKTAADLQGKKVGVGLGTNY EEWLRQHVQGVDIRTYDDDPTKYQDLRVGRIDAILVDRLAALDLVKKTKGTLAVTGDA FSRQESGVALRKGNEDLLKAVDNAIAEMQKDGTLKALSEKWFGADVTQ" misc_feature complement(2043190..2043987) /gene="fliY" /locus_tag="STM1954" /note="cystine ABC transporter substrate-binding protein; Region: PRK11260" /db_xref="CDD:183061" regulatory complement(2043993..2043998) /regulatory_class="ribosome_binding_site" /gene="fliY" /locus_tag="STM1954" /note="putative RBS for fliY; RegulonDB:STMS1H002114" gene complement(2044134..2044696) /gene="fliZ" /locus_tag="STM1955" /db_xref="GeneID:1253476" CDS complement(2044134..2044685) /gene="fliZ" /locus_tag="STM1955" /note="FLIZ protein. (SW:FLIZ_SALTY)" /codon_start=1 /transl_table=11 /product="putative regulator of FliA" /protein_id="NP_460908.1" /db_xref="GeneID:1253476" /translation="MTVQQPKRRPLSRYLKDFKHSQTHCAHCHKLLDRITLVRRGKIV NKIAISQLDMLLDDAAWQREQKEWVALCRFCGDLHCKKQSDFFDIIGFKQYLFEQTEM SHGTVREYVVRLRRLGNYLSEQNISHDLLQDGFLDESLAPWLPETSTNNYRIALRKYQ QYKAHQQIAPRQKSPFTASSDIY" misc_feature complement(2044185..2044685) /gene="fliZ" /locus_tag="STM1955" /note="flagella biosynthesis regulatory protein FliZ; Region: PRK11582" /db_xref="CDD:183213" regulatory complement(2044691..2044696) /regulatory_class="ribosome_binding_site" /gene="fliZ" /locus_tag="STM1955" /note="putative RBS for fliZ; RegulonDB:STMS1H002115" gene complement(2044744..2045477) /gene="fliA" /locus_tag="STM1956" /db_xref="GeneID:1253477" CDS complement(2044744..2045463) /gene="fliA" /locus_tag="STM1956" /note="transcription of late flagellar genes (class 3a and 3b operons); RNA polymerase sigma factor for flagellar operon (sigma-f factor)(sigma-27) (sigma-28). (SW:FLIA_SALTY)" /codon_start=1 /transl_table=11 /product="sigma F (sigma 28) factor of RNA polymerase" /protein_id="NP_460909.1" /db_xref="GeneID:1253477" /translation="MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDL LQAGGIGLLNAVDRYDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQ AMGQLEQELGRNATETEVAERLGIPVAEYRQMLLDTNNSQLFSYDEWREEHGDSIELV TEEHQQENPLHQLLEGDLRQRVMDAIESLPEREQLVLTLYYQEELNLKEIGAVLEVGE SRVSQLHSQAIKRLRTKLGKL" misc_feature complement(2044753..2045454) /gene="fliA" /locus_tag="STM1956" /note="flagellar biosynthesis sigma factor; Validated; Region: fliA; PRK06986" /db_xref="CDD:235901" regulatory complement(2045472..2045477) /regulatory_class="ribosome_binding_site" /gene="fliA" /locus_tag="STM1956" /note="putative RBS for fliA; RegulonDB:STMS1H002116" mobile_element complement(2045625..2046333) /mobile_element_type="insertion sequence:IS200_2" gene complement(2045732..2046196) /gene="tnpA_2" /locus_tag="STM1957" /db_xref="GeneID:1253478" CDS complement(2045732..2046190) /gene="tnpA_2" /locus_tag="STM1957" /note="transposase for insertion sequence element is200 (SW:T200_SALTY)" /codon_start=1 /transl_table=11 /product="transposase for IS200" /protein_id="NP_460910.3" /db_xref="GeneID:1253478" /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKL CEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRN REFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK" misc_feature complement(2045807..2046178) /gene="tnpA_2" /locus_tag="STM1957" /note="Transposase IS200 like; Region: Y1_Tnp; cl00848" /db_xref="CDD:469954" regulatory complement(2046191..2046196) /regulatory_class="ribosome_binding_site" /gene="tnpA_2" /locus_tag="STM1957" /note="putative RBS for tnpA_2; RegulonDB:STMS1H002117" gene complement(2046371..2047583) /gene="fliB" /locus_tag="STM1958" /db_xref="GeneID:1253479" CDS complement(2046371..2047576) /gene="fliB" /locus_tag="STM1958" /note="lysine-N-methylase. (SW:FLIB_SALTY)" /codon_start=1 /transl_table=11 /product="N-methylation of lysine residues in flagellin" /protein_id="NP_460911.1" /db_xref="GeneID:1253479" /translation="MKEITVTEPAFVTRFSCSGSACRDHCCKGWKITLDKTTVKKYLA SKDTTIRTIAQDHIILLKKNNSHWGEIKLPSALGNCPYLDEDRLCRVQKTLGAKALSH TCSSFPRAHHTYKNEVRNSLSLACPEVTSRILNDPDAMALSEKTIIQQTFNTAPLFPA QQKLLNLFCLSLINHANSSTEAALYALIKFVMYAQKFAKIDDAALGELEQVYAALLEQ LQTGVLAQELMNIAPDSKVKTSLVLQMQDYFRSLPLNRGSVILDHYIQCLLRVLTAEE GVSMEQKVSDIESSLARCLQANEQQKNWAFRNLILYKIWENNFPNQPNVDPLRALYII VAEYAFIKLLTAASVHERGRIEWDDVTNIVYSFHSRSQHNSEVAKNFHRHIETVRTGD DLSMIHLLT" misc_feature complement(2046434..2047552) /gene="fliB" /locus_tag="STM1958" /note="Uncharacterized protein YkgJ, contains CxxCxxCC motif [General function prediction only]; Region: YkgJ; cl46241" /db_xref="CDD:480581" regulatory complement(2047578..2047583) /regulatory_class="ribosome_binding_site" /gene="fliB" /locus_tag="STM1958" /note="putative RBS for fliB; RegulonDB:STMS1H002118" gene complement(2047655..2049154) /gene="fliC" /locus_tag="STM1959" /db_xref="GeneID:1253480" CDS complement(2047655..2049142) /gene="fliC" /locus_tag="STM1959" /note="filament structural protein; flagellin (phase-1-I flagellin). (SW:FLIC_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis; flagellin" /protein_id="NP_460912.1" /db_xref="GeneID:1253480" /translation="MAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDD AAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANS TNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDL KQINSQTLGLDTLNVQQKYKVSDTAATVTGYADTTIALDNSTFKASATGLGGTDQKID GDLKFDDTTGKYYAKVTVTGGTGKDGYYEVSVDKTNGEVTLAGGATSPLTGGLPATAT EDVKNVQVANADLTEAKAALTAAGVTGTASVVKMSYTDNNGKTIDGGLAVKVGDDYYS ATQNKDGSISINTTKYTADDGTSKTALNKLGGADGKTEVVSIGGKTYAASKAEGHNFK AQPDLAEAAATTTENPLQKIDAALAQVDTLRSDLGAVQNRFNSAITNLGNTVNNLTSA RSRIEDSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR" misc_feature complement(2047658..2049142) /gene="fliC" /locus_tag="STM1959" /note="FliC/FljB family flagellin; Region: PRK08026" /db_xref="CDD:236140" regulatory complement(2049149..2049154) /regulatory_class="ribosome_binding_site" /gene="fliC" /locus_tag="STM1959" /note="putative RBS for fliC; RegulonDB:STMS1H002119" gene 2049387..2050802 /gene="fliD" /locus_tag="STM1960" /db_xref="GeneID:1253481" regulatory 2049387..2049392 /regulatory_class="ribosome_binding_site" /gene="fliD" /locus_tag="STM1960" /note="putative RBS for fliD; RegulonDB:STMS1H002120" CDS 2049399..2050802 /gene="fliD" /locus_tag="STM1960" /note="flagellar biosynthesis; enables filament assembly; flagellar hook-associated protein 2 (HAP2) (filament CAP protein)(flagellar CAP protein). (SW:FLID_SALTY)" /codon_start=1 /transl_table=11 /product="filament capping protein" /protein_id="NP_460913.1" /db_xref="GeneID:1253481" /translation="MASISSLGVGSNLPLDQLLTDLTKNEKGRLTPITKQQSANSAKL TAYGTLKSALEKFQTANTALNKADLFKSTVASSTTEDLKVSTTAGAAAGTYKINVTQL AAAQSLATKTTFATTKEQLGDTSVTSRTIKIEQPGRKEPLEIKLDKGDTSMEAIRDAI NDADSGIAASIVKVKENEFQLVLTANSGTDNTMKITVEGDTKLNDLLAYDSTTNTGNM QELVKAENAKLNVNGIDIERQSNTVTDAPQGITLTLTKKVTDATVTVTKDDTKAKEAI KSWVDAYNSLVDTFSSLTKYTAVEPGEEASDKNGALLGDSVVRTIQTGIRAQFANSGS NSAFKTMAEIGITQDGTSGKLKIDDDKLTKVLKDNTAAARELLVGDGKETGITTKIAT EVKSYLADDGIIDNAQDNVNATLKSLTKQYLSVSNSIDETVARYKAQFTQLDTMMSKL NNTSSYLTQQFTAMNKS" misc_feature 2049399..2050784 /gene="fliD" /locus_tag="STM1960" /note="flagellar capping protein; Reviewed; Region: fliD; PRK08032" /db_xref="CDD:236141" gene 2050808..2051224 /gene="fliS" /locus_tag="STM1961" /db_xref="GeneID:1253482" regulatory 2050808..2050813 /regulatory_class="ribosome_binding_site" /gene="fliS" /locus_tag="STM1961" /note="putative RBS for fliS; RegulonDB:STMS1H002121" CDS 2050817..2051224 /gene="fliS" /locus_tag="STM1961" /note="flagellar biosynthesis; flagellar protein FLIS. (SW:FLIS_SALTY)" /codon_start=1 /transl_table=11 /product="repressor of class 3a and 3b operons (RflA activity)" /protein_id="NP_460914.1" /db_xref="GeneID:1253482" /translation="MYTASGIKAYAQVSVESAVMSASPHQLIEMLFDGANSALVRARL FLEQGDVVAKGEALSKAINIIDNGLKAGLDQEKGGEIATNLSELYDYMIRRLLQANLR NDAQAIEEVEGLLSNIAEAWKQISPKASFQESR" misc_feature 2050862..2051203 /gene="fliS" /locus_tag="STM1961" /note="Flagellin-specific chaperone FliS [Cell motility, Intracellular trafficking, secretion, and vesicular transport]; Region: FliS; COG1516" /db_xref="CDD:441125" misc_feature order(2050886..2050891,2050898..2050900,2050904..2050909, 2050916..2050918,2050994..2050996,2051003..2051008, 2051018..2051023,2051030..2051035,2051057..2051059, 2051066..2051068,2051075..2051083,2051087..2051089, 2051144..2051149,2051153..2051158,2051165..2051170, 2051177..2051182,2051186..2051191) /gene="fliS" /locus_tag="STM1961" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:294015" misc_feature 2050886..2050951 /gene="fliS" /locus_tag="STM1961" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:294015" misc_feature 2050967..2051035 /gene="fliS" /locus_tag="STM1961" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:294015" misc_feature 2051057..2051107 /gene="fliS" /locus_tag="STM1961" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:294015" misc_feature 2051132..2051188 /gene="fliS" /locus_tag="STM1961" /note="coiled coil [structural motif]; Region: coiled coil" /db_xref="CDD:294015" gene 2051210..2051592 /gene="fliT" /locus_tag="STM1962" /db_xref="GeneID:1253483" regulatory 2051210..2051215 /regulatory_class="ribosome_binding_site" /gene="fliT" /locus_tag="STM1962" /note="putative RBS for fliT; RegulonDB:STMS1H002122" CDS 2051224..2051592 /gene="fliT" /locus_tag="STM1962" /note="flagellar biosynthesis; flagellar protein FLIT. (SW:FLIT_SALTY)" /codon_start=1 /transl_table=11 /product="putative export chaperone for FliD" /protein_id="NP_460915.1" /db_xref="GeneID:1253483" /translation="MTSTVEFINRWQRIALLSQSLLELAQRGEWDLLLQQEVSYLQSI ETVMEKQTPPGITRSIQDMVAGYIKQTLDNEQLLKGLLQQRLDELSSLIGQSTRQKSL NNAYGRLSGMLLVPDAPGAS" misc_feature 2051224..2051586 /gene="fliT" /locus_tag="STM1962" /note="flagella biosynthesis regulatory protein FliT; Region: PRK10548" /db_xref="CDD:182538" gene 2051650..2053148 /gene="amyA" /locus_tag="STM1963" /db_xref="GeneID:1253484" regulatory 2051650..2051655 /regulatory_class="ribosome_binding_site" /gene="amyA" /locus_tag="STM1963" /note="putative RBS for amyA; RegulonDB:STMS1H002123" CDS 2051664..2053148 /gene="amyA" /locus_tag="STM1963" /EC_number="3.2.1.1" /note="cytoplasmic alpha-amylase. (SW:AMY2_SALTY)" /codon_start=1 /transl_table=11 /product="cytoplasmic alpha-amylase" /protein_id="NP_460916.1" /db_xref="GeneID:1253484" /translation="MKNPTLLQYFHWYYPDGGKLWSELAERADGLNDIGINMVWLPPA CKGASGGYSVGYDTYDLFDLGEFDQKGTIATKYGDKRQLLTAIDALKKNNIAVLLDVV VNHKMGADEKERIRVQRVNQDDRTQIDDNIIECEGWTRYTFPARAGQYSNFIWDYHCF SGIDHIENPDEDGIFKIVNDYTGDGWNDQVDDEMGNFDYLMGENIDFRNHAVTEEIKY WARWVMEQTHCDGFRLDAVKHIPAWFYKEWIEHVQAVAPKPLFIVAEYWSHEVDKLQT YIDQVDGKTMLFDAPLQMKFHEASRQGAEYDMRHIFTGTLVEADPFHAVTLVANHDTQ PLQALEAPVEPWFKPLAYALILLRENGVPSVFYPDLYGASYEDSGENGETCRVDMPVI NQLDRLILARQRFAHGIQTLFFDHPNCIAFSRSGTEENPGCVVVLSNGDDGEKTLLLG DNYANKTWRDFLGNRDEYVVTNDQGEATFFCNAGSVSVWVIEDV" misc_feature 2051664..2053133 /gene="amyA" /locus_tag="STM1963" /note="cytoplasmic alpha-amylase; Reviewed; Region: PRK09441" /db_xref="CDD:236518" misc_feature order(2051697..2051699,2051871..2051873,2051976..2051978, 2052261..2052269,2052360..2052362,2052366..2052371, 2052375..2052380,2052456..2052458,2052462..2052467, 2052543..2052545,2052654..2052659) /gene="amyA" /locus_tag="STM1963" /note="active site" /db_xref="CDD:200457" misc_feature order(2051973..2051975,2052255..2052257,2052273..2052275) /gene="amyA" /locus_tag="STM1963" /note="Na/Ca binding site [ion binding]; other site" /db_xref="CDD:200457" misc_feature order(2052366..2052368,2052456..2052458,2052657..2052659) /gene="amyA" /locus_tag="STM1963" /note="catalytic site [active]" /db_xref="CDD:200457" gene complement(2053188..2053624) /gene="yedD" /locus_tag="STM1964" /db_xref="GeneID:1253485" CDS complement(2053188..2053613) /gene="yedD" /locus_tag="STM1964" /note="hypothetical 15.5 Kda protein in amyA-fliE intergenic region. (SW:YEDD_SALTY)" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_460917.1" /db_xref="GeneID:1253485" /translation="MKKVAIVGALLVLAGCAEVENYNDVVKTPAPAGLEGYWQSKGPQ RKLVSPEAIASLVVTKEGDTLDCRQWQRVIALPGKLTMLSDDLTNVTVKRELYEIERD GNTLEYDGMTLQRVARPTPECAAALEKTPLPTPLPTPLP" misc_feature complement(2053227..2053613) /gene="yedD" /locus_tag="STM1964" /note="lipoprotein; Provisional; Region: PRK10397" /db_xref="CDD:182428" regulatory complement(2053619..2053624) /regulatory_class="ribosome_binding_site" /gene="yedD" /locus_tag="STM1964" /note="putative RBS for yedD; RegulonDB:STMS1H002124" gene 2053721..2055004 /gene="yedE" /locus_tag="STM1965" /db_xref="GeneID:1253486" regulatory 2053721..2053726 /regulatory_class="ribosome_binding_site" /gene="yedE" /locus_tag="STM1965" /note="putative RBS for yedE; RegulonDB:STMS1H002125" CDS 2053739..2055004 /gene="yedE" /locus_tag="STM1965" /note="hypothetical 44.2 Kda protein in amyA-fliE intergenic region. (SW:YEDE_SALTY)" /codon_start=1 /transl_table=11 /product="putative membrane component of transport system" /protein_id="NP_460918.3" /db_xref="GeneID:1253486" /translation="MIGVVCALLVSHLLSSEAKHMSWQHFKQTWLIKFWAPAPAVIAA GILSTYYFGITGTFWAVTGEFTRWGGQILQLFGVHAEQWGYYKLIHLEGTPLTRIDGM MILGMFGGCFAAALWANNVKLRMPRSRIRIVQAVAGGIIAGFGARLAMGCNLAAFFTG IPQFSLHAWFFALATAIGSWFGARFTLLPIFRIPVKMQKVSAASPLTQKPDQARRRFR LGMLVFIGMIGWALLTAMHQPKLGLAMLFGVGFGLLIERAQICFTSAFRDLWISGRAH MAKAIIFGMAVSAIGIFSYVQLGVAPKIMWAGPNAVIGGLLFGFGIVLAGGCETGWMY RAVEGQVHYWWVGLGNVIGSTILAYYWDDFAPALATSWDKVNLLNTFGPLGGLLVTYL LLFTALMLIIGWEKRFFRRAGLTPAKESV" misc_feature 2053814..2054992 /gene="yedE" /locus_tag="STM1965" /note="putative inner membrane protein; Provisional; Region: PRK11099" /db_xref="CDD:236845" gene 2054990..2055234 /gene="yedF" /locus_tag="STM1966" /db_xref="GeneID:1253487" regulatory 2054990..2054995 /regulatory_class="ribosome_binding_site" /gene="yedF" /locus_tag="STM1966" /note="putative RBS for yedF; RegulonDB:STMS1H002126" CDS 2055001..2055234 /gene="yedF" /locus_tag="STM1966" /note="hypothetical 8.6 Kda protein in amyA-fliE intergenic region (ORF 9). (SW:YEDF_ECOLI)" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_460919.1" /db_xref="GeneID:1253487" /translation="MKNIVPDYRLDMVGEPCPYPAVATLEAMPQLKKGEILEVVSDCP QSINNIPLDARNHGYTVLDIQQDGPTIRYLIQK" misc_feature 2055001..2055231 /gene="yedF" /locus_tag="STM1966" /note="putative sulfurtransferase YedF; Region: PRK11018" /db_xref="CDD:236822" misc_feature order(2055028..2055033,2055040..2055042,2055049..2055060, 2055064..2055066) /gene="yedF" /locus_tag="STM1966" /note="CPxP motif; other site" /db_xref="CDD:239514" gene 2055492..2055885 /locus_tag="STM1967" /db_xref="GeneID:13865721" regulatory 2055492..2055497 /regulatory_class="ribosome_binding_site" /locus_tag="STM1967" /note="putative RBS for STM1967; RegulonDB:STMS1H002127" CDS 2055499..2055885 /locus_tag="STM1967" /codon_start=1 /transl_table=11 /product="putative 50S ribosomal protein" /protein_id="NP_448379.1" /db_xref="GeneID:13865721" /translation="MIYLCTAEAKKMIKIIFISIIGVVCLAAARYSPVTVVNAHPSAI ARCLADNLSPYGYILDLHETDIPGINKEFTVYYRNGAYIAGTFWIANSMTIASERIVG MNGVSKQAYPIFNKSLQQCATRLSIK" gene complement(2056005..2056331) /gene="fliE" /locus_tag="STM1968" /db_xref="GeneID:1253489" CDS complement(2056005..2056319) /gene="fliE" /locus_tag="STM1968" /note="flagellar hook-basal body complex protein FLIE. (SW:FLIE_SALTY)" /codon_start=1 /transl_table=11 /product="putative flagellar hook-basal body protein" /protein_id="NP_460921.1" /db_xref="GeneID:1253489" /translation="MAAIQGIEGVISQLQATAMAARGQDTHSQSTVSFAGQLHAALDR ISDRQAAARVQAEKFTLGEPGIALNDVMADMQKASVSMQMGIQVRNKLVAAYQEVMSM QV" misc_feature complement(2056008..2056319) /gene="fliE" /locus_tag="STM1968" /note="flagellar hook-basal body protein FliE; Reviewed; Region: fliE; PRK00253" /db_xref="CDD:178948" regulatory complement(2056326..2056331) /regulatory_class="ribosome_binding_site" /gene="fliE" /locus_tag="STM1968" /note="putative RBS for fliE; RegulonDB:STMS1H002128" gene 2056526..2058218 /gene="fliF" /locus_tag="STM1969" /db_xref="GeneID:1253490" regulatory 2056526..2056531 /regulatory_class="ribosome_binding_site" /gene="fliF" /locus_tag="STM1969" /note="putative RBS for fliF; RegulonDB:STMS1H002129" CDS 2056536..2058218 /gene="fliF" /locus_tag="STM1969" /note="flagellar biosynthesis; flagellar M-ring protein. (SW:FLIF_SALTY)" /codon_start=1 /transl_table=11 /product="basal-body MS (membrane and supramembrane)-ring and collar protein" /protein_id="NP_460922.1" /db_xref="GeneID:1253490" /translation="MSATASTATQPKPLEWLNRLRANPRIPLIVAGSAAVAIVVAMVL WAKTPDYRTLFSNLSDQDGGAIVAQLTQMNIPYRFANGSGAIEVPADKVHELRLRLAQ QGLPKGGAVGFELLDQEKFGISQFSEQVNYQRALEGELARTIETLGPVKSARVHLAMP KPSLFVREQKSPSASVTVTLEPGRALDEGQISAVVHLVSSAVAGLPPGNVTLVDQSGH LLTQSNTSGRDLNDAQLKFANDVESRIQRRIEAILSPIVGNGNVHAQVTAQLDFANKE QTEEHYSPNGDASKATLRSRQLNISEQVGAGYPGGVPGALSNQPAPPNEAPIATPPTN QQNAQNTPQTSTSTNSNSAGPRSTQRNETSNYEVDRTIRHTKMNVGDIERLSVAVVVN YKTLADGKPLPLTADQMKQIEDLTREAMGFSDKRGDTLNVVNSPFSAVDNTGGELPFW QQQSFIDQLLAAGRWLLVLVVAWILWRKAVRPQLTRRVEEAKAAQEQAQVRQETEEAV EVRLSKDEQLQQRRANQRLGAEVMSQRIREMSDNDPRVVALVIRQWMSNDHE" misc_feature 2056536..2058212 /gene="fliF" /locus_tag="STM1969" /note="flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF); Region: fliF; TIGR00206" /db_xref="CDD:129310" gene 2058194..2059206 /gene="fliG" /locus_tag="STM1970" /db_xref="GeneID:1253491" regulatory 2058194..2058199 /regulatory_class="ribosome_binding_site" /gene="fliG" /locus_tag="STM1970" /note="putative RBS for fliG; RegulonDB:STMS1H002130" CDS 2058211..2059206 /gene="fliG" /locus_tag="STM1970" /note="component of motor switching and energizing; flagellar motor switch protein FLIG. (SW:FLIG_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460923.1" /db_xref="GeneID:1253491" /translation="MSNLSGTDKSVILLMTIGEDRAAEVFKHLSTREVQALSTAMANV RQISNKQLTDVLSEFEQEAEQFAALNINANEYLRSVLVKALGEERASSLLEDILETRD TTSGIETLNFMEPQSAADLIRDEHPQIIATILVHLKRSQAADILALFDERLRHDVMLR IATFGGVQPAALAELTEVLNGLLDGQNLKRSKMGGVRTAAEIINLMKTQQEEAVITAV REFDGELAQKIIDEMFLFENLVDVDDRSIQRLLQEVDSESLLIALKGAEPPLREKFLR NMSQRAADILRDDLANRGPVRLSQVENEQKAILLIVRRLAETGEMVIGSGEDTYV" misc_feature 2058211..2059203 /gene="fliG" /locus_tag="STM1970" /note="flagellar motor switch protein FliG; Region: fliG; TIGR00207" /db_xref="CDD:272961" gene 2059189..2059906 /gene="fliH" /locus_tag="STM1971" /db_xref="GeneID:1253492" regulatory 2059189..2059194 /regulatory_class="ribosome_binding_site" /gene="fliH" /locus_tag="STM1971" /note="putative RBS for fliH; RegulonDB:STMS1H002131" CDS 2059199..2059906 /gene="fliH" /locus_tag="STM1971" /note="possible export of flagellar proteins; flagellar assembly protein FLIH. (SW:FLIH_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460924.1" /db_xref="GeneID:1253492" /translation="MSNELPWQVWTPDDLAPPPETFVPVEADNVTLTEDTPEPELTAE QQLEQELAQLKIQAHEQGYNAGLAEGRQKGHAQGYQEGLAQGLEQGQAQAQTQQAPIH ARMQQLVSEFQNTLDALDSVIASRLMQMALEAARQVIGQTPAVDNSALIKQIQQLLQQ EPLFSGKPQLRVHPDDLQRVEEMLGATLSLHGWRLRGDPTLHHGGCKVSADEGDLDAS VATRWQELCRLAAPGVL" misc_feature 2059199..2059903 /gene="fliH" /locus_tag="STM1971" /note="flagellar assembly protein FliH; Region: fliH; PRK05687" /db_xref="CDD:235562" gene 2059886..2061276 /gene="fliI" /locus_tag="STM1972" /db_xref="GeneID:1253493" regulatory 2059886..2059891 /regulatory_class="ribosome_binding_site" /gene="fliH" /locus_tag="STM1971" /note="putative RBS for fliI; RegulonDB:STMS1H002132" CDS 2059906..2061276 /gene="fliI" /locus_tag="STM1972" /EC_number="7.1.2.2" /note="flagellum-specific ATP synthase. (SW:FLII_SALTY)" /codon_start=1 /transl_table=11 /product="flagellum-specific ATP synthase" /protein_id="NP_460925.1" /db_xref="GeneID:1253493" /translation="MTTRLTRWLTALDNFEAKMALLPAVRRYGRLTRATGLVLEATGL QLPLGATCIIERQDGPETKEVESEVVGFNGQRLFLMPLEEVEGILPGARVYARNGHGD GLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVLD TGVRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKD FIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTR YAMAQREIALAIGEPPATKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDD QQDPIADSARAILDGHIVLSRRLAEAGHYPAIDIEASISRAMTALITEQHYARVRLFK QLLSSFQRNRDLVSVGAYAKGSDPMLDKAITLWPQLEAFLQQGIFERADWEDSLQALD LIFPTV" misc_feature 2059906..2061270 /gene="fliI" /locus_tag="STM1972" /note="flagellum-specific ATP synthase FliI; Region: fliI; PRK07960" /db_xref="CDD:181182" gene 2061282..2061741 /gene="fliJ" /locus_tag="STM1973" /db_xref="GeneID:1253494" regulatory 2061282..2061287 /regulatory_class="ribosome_binding_site" /gene="fliJ" /locus_tag="STM1973" /note="putative RBS for fliJ; RegulonDB:STMS1H002133" CDS 2061298..2061741 /gene="fliJ" /locus_tag="STM1973" /note="flagellar FLIJ protein. (SW:FLIJ_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar FliJ protein" /protein_id="NP_460926.1" /db_xref="GeneID:1253494" /translation="MAQHGALETLKDLAEKEVDDAARLLGEMRRGCQQAEEQLKMLID YQNEYRSNLNTDMGNGIASNRWINYQQFIQTLEKAIEQHRLQLTQWTQKVDLALKSWR EKKQRLQAWQTLQDRQTAAALLAENRMDQKKMDEFAQRAAMRKPE" misc_feature 2061298..2061738 /gene="fliJ" /locus_tag="STM1973" /note="flagella biosynthesis chaperone FliJ; Region: fliJ; PRK05689" /db_xref="CDD:235563" gene 2061726..2062955 /gene="fliK" /locus_tag="STM1974" /db_xref="GeneID:1253495" regulatory 2061726..2061731 /regulatory_class="ribosome_binding_site" /gene="fliJ" /locus_tag="STM1973" /note="putative RBS for fliK; RegulonDB:STMS1H002134" CDS 2061738..2062955 /gene="fliK" /locus_tag="STM1974" /note="flagellar hook-length control protein. (SW:FLIK_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar hook-length control protein" /protein_id="NP_460927.1" /db_xref="GeneID:1253495" /translation="MITLPQLITTDTDMTAGLTSGKTTGSAEDFLALLAGALGADGAQ GKDARITLADLQAAGGKLSKELLTQHGEPGQAVKLADLLAQKANATDETLTDLTQAQH LLSTLTPSLKTSALAALSKTAQHDEKTPALSDEDLASLSALFAMLPGQPVATPVAGET PAENHIALPSLLRGDMPSAPQEETHTLSFSEHEKGKTEASLARASDDRATGPALTPLV VAAAATSAKVEVDSPPAPVTHGAAMPTLSSATAQPLPVASAPVLSAPLGSHEWQQTFS QQVMLFTRQGQQSAQLRLHPEELGQVHISLKLDDNQAQLQMVSPHSHVRAALEAALPM LRTQLAESGIQLGQSSISSESFAGQQQSSSQQQSSRAQHTDAFGAEDDIALAAPASLQ AAARGNGAVDIFA" misc_feature 2061738..2062952 /gene="fliK" /locus_tag="STM1974" /note="flagellar hook length control protein FliK; Region: PRK10118" /db_xref="CDD:236652" gene 2063043..2063527 /gene="fliL" /locus_tag="STM1975" /db_xref="GeneID:1253496" regulatory 2063043..2063048 /regulatory_class="ribosome_binding_site" /gene="fliL" /locus_tag="STM1975" /note="putative RBS for fliL; RegulonDB:STMS1H002135" CDS 2063060..2063527 /gene="fliL" /locus_tag="STM1975" /note="flagellar FLIL protein. (SW:FLIL_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis" /protein_id="NP_460928.1" /db_xref="GeneID:1253496" /translation="MTDSAINKKSKRSIWIPLLVLITLAACATAGYSYWRMQQQPTTN AKAEPAPPPAPVFFALDTFTVNLGDADRVLYIGVTLRLKDEATRARLNEYLPEVRSRL LLLFSRQNAAELSTEAGKQKLIAAIKETLAAPLVAGQPKQVVTDVLYTAFILR" misc_feature 2063060..2063524 /gene="fliL" /locus_tag="STM1975" /note="flagellar basal body-associated protein FliL; Reviewed; Region: fliL; PRK07021" /db_xref="CDD:235909" gene 2063521..2064536 /gene="fliM" /locus_tag="STM1976" /db_xref="GeneID:1253497" regulatory 2063521..2063526 /regulatory_class="ribosome_binding_site" /gene="fliL" /locus_tag="STM1975" /note="putative RBS for fliM; RegulonDB:STMS1H002136" CDS 2063532..2064536 /gene="fliM" /locus_tag="STM1976" /note="component of motor switch and energizing; flagellar motor switch protein FLIM. (SW:FLIM_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460929.1" /db_xref="GeneID:1253497" /translation="MGDSILSQAEIDALLNGDSDTKDEPTPGIASDSDIRPYDPNTQR RVVRERLQALEIINERFARQFRMGLFNLLRRSPDITVGAIRIQPYHEFARNLPVPTNL NLIHLKPLRGTGLVVFSPSLVFIAVDNLFGGDGRFPTKVEGREFTHTEQRVINRMLKL ALEGYSDAWKAINPLEVEYVRSEMQVKFTNITTSPNDIVVNTPFHVEIGNLTGEFNIC LPFSMIEPLRELLVNPPLENSRHEDQNWRDNLVRQVQHSELELVANFADIPLRLSQIL KLKPGDVLPIEKPDRIIAHVDGVPVLTSQYGTVNGQYALRVEHLINPILNSLNEEQPK " misc_feature 2063532..2064533 /gene="fliM" /locus_tag="STM1976" /note="flagellar motor switch protein FliM; Validated; Region: fliM; PRK06666" /db_xref="CDD:235849" gene 2064519..2064946 /gene="fliN" /locus_tag="STM1977" /db_xref="GeneID:1253498" regulatory 2064519..2064524 /regulatory_class="ribosome_binding_site" /gene="fliN" /locus_tag="STM1977" /note="putative RBS for fliN; RegulonDB:STMS1H002137" CDS 2064533..2064946 /gene="fliN" /locus_tag="STM1977" /note="component of motor switch and energizing; flagellar motor switch protein FLIM. (SW:FLIN_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460930.1" /db_xref="GeneID:1253498" /translation="MSDMNNPSDENTGALDDLWADALNEQKATTTKSAADAVFQQLGG GDVSGAMQDIDLIMDIPVKLTVELGRTRMTIKELLRLTQGSVVALDGLAGEPLDILIN GYLIAQGEVVVVADKYGVRITDIITPSERMRRLSR" misc_feature 2064533..2064943 /gene="fliN" /locus_tag="STM1977" /note="flagellar motor switch protein FliN; Validated; Region: fliN; PRK07963" /db_xref="CDD:181183" gene 2064946..2065323 /gene="fliO" /locus_tag="STM1978" /db_xref="GeneID:1253499" CDS 2064946..2065323 /gene="fliO" /locus_tag="STM1978" /note="flagellar protein FLIO. (SW:FLIO_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460931.3" /db_xref="GeneID:1253499" /translation="MMKTEATVSQPTAPAGSPLMQVSGALIGIIALILAAAWVIKRMG FAPKGNSVRGLKVSASASLGPRERVVIVEVENARLVLGVTASQINLLHTLPPAENDTE APVAPPADFQNMMKSLLKRSGRS" misc_feature 2064949..2065320 /gene="fliO" /locus_tag="STM1978" /note="flagellar type III secretion system protein FliO; Region: PRK11486" /db_xref="CDD:183160" gene 2065310..2066060 /gene="fliP" /locus_tag="STM1979" /db_xref="GeneID:1253500" regulatory 2065310..2065315 /regulatory_class="ribosome_binding_site" /gene="fliO" /locus_tag="STM1978" /note="putative RBS for fliP; RegulonDB:STMS1H002138" CDS 2065323..2066060 /gene="fliP" /locus_tag="STM1979" /note="flagellar biosynthetic protein FLIP. (SW:FLIP_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460932.1" /db_xref="GeneID:1253500" /translation="MRRLLFLSLAGLWLFSPAAAAQLPGLISQPLAGGGQSWSLSVQT LVFITSLTFLPAILLMMTSFTRIIIVFGLLRNALGTPSAPPNQVLLGLALFLTFFIMS PVIDKIYVDAYQPFSEQKISMQEALDKGAQPLRAFMLRQTREADLALFARLANSGPLQ GPEAVPMRILLPAYVTSELKTAFQIGFTIFIPFLIIDLVIASVLMALGMMMVPPATIA LPFKLMLFVLVDGWQLLMGSLAQSFYS" misc_feature 2065326..2066054 /gene="fliP" /locus_tag="STM1979" /note="Flagellar biosynthesis protein FliP [Cell motility]; Region: FliP; COG1338" /db_xref="CDD:440949" gene 2066060..2066339 /gene="fliQ" /locus_tag="STM1980" /db_xref="GeneID:1253501" regulatory 2066060..2066065 /regulatory_class="ribosome_binding_site" /gene="fliQ" /locus_tag="STM1980" /note="putative RBS for fliQ; RegulonDB:STMS1H002139" CDS 2066070..2066339 /gene="fliQ" /locus_tag="STM1980" /note="flagellar biosynthetic protein FLIQ. (SW:FLIQ_SALTY)" /codon_start=1 /transl_table=11 /product="flagellar biosynthesis protein" /protein_id="NP_460933.1" /db_xref="GeneID:1253501" /translation="MTPESVMMMGTEAMKVALALAAPLLLVALITGLIISILQAATQI NEMTLSFIPKIVAVFIAIIVAGPWMLNLLLDYVRTLFSNLPYIIG" misc_feature 2066070..2066336 /gene="fliQ" /locus_tag="STM1980" /note="flagellar type III secretion system protein FliQ; Region: fliQ; PRK05700" /db_xref="CDD:235567" gene 2066332..2067142 /gene="fliR" /locus_tag="STM1981" /db_xref="GeneID:1253502" regulatory 2066332..2066337 /regulatory_class="ribosome_binding_site" /gene="fliQ" /locus_tag="STM1980" /note="putative RBS for fliR; RegulonDB:STMS1H002140" CDS 2066348..2067142 /gene="fliR" /locus_tag="STM1981" /note="flagellar biosynthetic protein FLIR. (SW:FLIR_SALTY)" /codon_start=1 /transl_table=11 /product="putative flagellar biosynthetic protein" /protein_id="NP_460934.1" /db_xref="GeneID:1253502" /translation="MIQVTSEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKL GLGIMITLVIAPSLPANDTPLFSIAALWLAMQQILIGIALGFTMQFAFAAVRTAGEFI GLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIG SNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGF PLTLTVGIMLMAALMPLIAPFCEHLFSEIFNLLADIVSEMPINNNP" misc_feature 2066372..2067097 /gene="fliR" /locus_tag="STM1981" /note="flagellar type III secretion system protein FliR; Region: fliR; PRK05701" /db_xref="CDD:235568" gene 2067341..2068047 /gene="rcsA" /locus_tag="STM1982" /db_xref="GeneID:1253503" regulatory 2067341..2067349 /regulatory_class="minus_35_signal" /gene="rcsA" /locus_tag="STM1982" /note="putative -35_signal for rcsA; RegulonDB:STMLTH004522" regulatory 2067365..2067373 /regulatory_class="minus_10_signal" /gene="rcsA" /locus_tag="STM1982" /note="putative -10_signal for rcsA; RegulonDB:STMLTH004522" regulatory 2067413..2067418 /regulatory_class="ribosome_binding_site" /gene="rcsA" /locus_tag="STM1982" /note="putative RBS for rcsA; RegulonDB:STMS1H002141" CDS 2067424..2068047 /gene="rcsA" /locus_tag="STM1982" /note="colanic acid capsular biosynthesis activation protein A. (SW:RCSA_SALTY)" /codon_start=1 /transl_table=11 /product="positive transcriptional regulator of capsular/exo- polysaccharide synthesis (LuxR/UhpA family)" /protein_id="NP_460935.1" /db_xref="GeneID:1253503" /translation="MSTIIMDLCSYTRLGLSGYLVSRGVKKREINDIETVDELAIACG AHQPSVVFINEDCFIHTPSDSQQIKQIINQHPDTLFIVFMAIANVHFDEYLLVRKNLL ISSKSIKPDSLDTLLGDILKKESGISGTINLPTLSLSRTESSMLRMWMEGQGTIQISD RMNIKAKTVSSHKGNIKRKIKTHNKQVIYHVVRLTDNVTNGIFVNMR" misc_feature 2067424..2068044 /gene="rcsA" /locus_tag="STM1982" /note="transcriptional regulator RcsA; Region: rcsA; PRK15411" /db_xref="CDD:185309" gene complement(2068086..2068293) /gene="dsrB" /locus_tag="STM1983" /db_xref="GeneID:1253504" ncRNA complement(2068086..2068280) /ncRNA_class="other" /gene="dsrB" /locus_tag="STM1983" /product="regulatory RNA" /note="regulated by DsrA and HNS; under control of RpoS" /db_xref="GeneID:1253504" regulatory complement(2068288..2068293) /regulatory_class="ribosome_binding_site" /gene="dsrB" /locus_tag="STM1983" /note="putative RBS for dsrB; RegulonDB:STMS1H002142" gene 2068397..2068636 /gene="yodD" /locus_tag="STM1984" /db_xref="GeneID:1253505" regulatory 2068397..2068402 /regulatory_class="ribosome_binding_site" /gene="yodD" /locus_tag="STM1984" /note="putative RBS for yodD; RegulonDB:STMS1H002143" CDS 2068409..2068636 /gene="yodD" /locus_tag="STM1984" /note="similar to E. coli orf, hypothetical protein (AAC75020.1); Blastp hit to AAC75020.1 (80 aa), 92% identity in aa 6 - 80" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460936.1" /db_xref="GeneID:1253505" /translation="MKTAKEYSDTAKREVSVDVDALLAAINEISESEVHRSQEDPERV SVDGREYHTWHELAEAFELDIHDFSVTEVNR" misc_feature 2068460..2068633 /gene="yodD" /locus_tag="STM1984" /note="Protein of unknown function (DUF2525); Region: DUF2525; pfam10733" /db_xref="CDD:431461" gene complement(2068647..2068736) /gene="dsrA" /locus_tag="STM1985" /db_xref="GeneID:1253506" ncRNA complement(2068647..2068730) /ncRNA_class="other" /gene="dsrA" /locus_tag="STM1985" /product="small RNA antisilencer of the H-HS-silenced rdsA gene in E. coli" /db_xref="GeneID:1253506" regulatory complement(2068731..2068736) /regulatory_class="ribosome_binding_site" /gene="dsrA" /locus_tag="STM1985" /note="putative RBS for dsrA; RegulonDB:STMS1H002144" gene 2068937..2069761 /gene="yedP" /locus_tag="STM1986" /db_xref="GeneID:1253507" regulatory 2068937..2068942 /regulatory_class="ribosome_binding_site" /gene="yedP" /locus_tag="STM1986" /note="putative RBS for yedP; RegulonDB:STMS1H002145" CDS 2068946..2069761 /gene="yedP" /locus_tag="STM1986" /note="similar to E. coli orf, hypothetical protein (AAC75021.1); Blastp hit to AAC75021.1 (271 aa), 75% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="putative hydrolase of the HAD superfamily" /protein_id="NP_460937.1" /db_xref="GeneID:1253507" /translation="MLSIHDPLLIFTDLDGTLLNSHTFEWQPAAPWLTRLHESGVPVI LCSSKTAAEMLQLQTTLNLQGLPLIAENGAVIQLDVHWEDHPNYPRLIAGISHNEIRL VLHKLREKEQFKFTTFDDVDDQVISEWTGLNRAQSALTRLHEASVSLIWRDSDERMAQ FVARLNDLGLQFVHGARFWHVLDASAGKDQAANWLIEAYRRQWRARPLTLGLGDGPND APLLDVMDYAVVVKGLNREGVHLRNDDPQRVYRSQNEGPDGWREGMDYFFSRS" misc_feature 2068946..2069758 /gene="yedP" /locus_tag="STM1986" /note="mannosyl-3-phosphoglycerate phosphatase-related protein; Region: PRK03669" /db_xref="CDD:179628" gene complement(2069740..2071466) /locus_tag="STM1987" /db_xref="GeneID:1253508" CDS complement(2069740..2071452) /locus_tag="STM1987" /note="similar to E. coli orf, hypothetical protein (AAC75022.1); Blastp hit to AAC75022.1 (569 aa), 65% identity in aa 6 - 567" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460938.1" /db_xref="GeneID:1253508" /translation="MPHETLLDNQGWFKKLARRFGPGHVVNTCFLIVMLFSTLLTWRE VMILKDAYVASQRNHLGSVANVLDRQLQFNMDRLIFLRNGMHEALVAPLAFSALQSAV TQFEQRRVRHFWQLELDKRRTLPLYGVSDQFVARTTLLSRESRDLANELTATLELGYL ARLARSSAMLALETMYVSRSGFYLSTLPTAYGSDIVSRYYQYVTQPWFIEQSQRRNSQ RGVRWFTSAQPYVTDEQKKVTASLPLDHDNYWYGVLAMDIPVASLQRFLRDAAEKDIE GEYQLYDNHLRLLTDSAPEQQTANTLNDRERALLAREIEKDTLGGLRLGTHYVSWERL DHFDGILLRVHTLREGIQGNFGSISIALTLLWGLFTAMLLISWGVIRHMVKNMFVLQN SLQWQAWHDPLTRLYNRGALFEKASRLAKRYREARQPFSVIQLDLDYFKSVNDRFGHQ AGDRVLSHAAGLIGSTIRAHDIAGRVGGEEFCIVLPGATKAQALQIAERIRQRINDKE ILVTKSTTLRISASMGISSAEEYGDYDFEQLQSLADKRLYYAKQSGRNRICASDATQE REKK" misc_feature complement(2069743..2071452) /locus_tag="STM1987" /note="cellulose biosynthesis regulator YedQ; Region: PRK15426" /db_xref="CDD:237964" regulatory complement(2071461..2071466) /regulatory_class="ribosome_binding_site" /locus_tag="STM1987" /note="putative RBS for STM1987; RegulonDB:STMS1H002146" gene complement(2071617..2071862) /locus_tag="STM1988" /db_xref="GeneID:1253509" CDS complement(2071617..2071862) /locus_tag="STM1988" /note="similar to E. coli orf, hypothetical protein (AAC75023.1); Blastp hit to AAC75023.1 (60 aa), 83% identity in aa 1 - 59" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460939.3" /db_xref="GeneID:1253509" /translation="MQNCPSSSKVKAFHLIQEAGMVFSVSEEVTVKEGGPRMIVTGYS SGMVECRWYDGFGVKREAFHENELVPGKERRVRDEAR" misc_feature complement(2071650..2071805) /locus_tag="STM1988" /note="Uncharacterized conserved protein YodC, DUF2158 family [Function unknown]; Region: YodC; COG5475" /db_xref="CDD:444226" gene complement(2071879..2072802) /gene="yedI" /locus_tag="STM1989" /db_xref="GeneID:1253510" CDS complement(2071879..2072790) /gene="yedI" /locus_tag="STM1989" /note="similar to E. coli orf, hypothetical protein (AAC75024.1); Blastp hit to AAC75024.1 (305 aa), 85% identity in aa 3 - 305" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460940.1" /db_xref="GeneID:1253510" /translation="MAGSSLLTLLDDIATLLDDISVMGKLAAKKTAGVLGDDLSLNAQ QVTGVRANRELPVVWSVAKGSLINKVILVPLALLISAFIPWAITPLLMLGGAFLCFEG VEKVLHTFEARKHKEDPAERQKRLEALAAQNPLAFEKDKVKGAVRTDFILSAEIVAIT LGIVAQAPLLNQVLVLAGIALVVTIGVYGLVGIIVKLDDMGYWLAEKRSVLAQGVGKG LLIIAPWLMKALSIVGTLAMFLVGGGIVVHGIAPLHHAIEHFAQQQGAFMAHTIPAGL NLVLGFIIGAIVVALVKGVAKIRGVSH" misc_feature complement(2071882..2072790) /gene="yedI" /locus_tag="STM1989" /note="hypothetical protein; Provisional; Region: PRK10062" /db_xref="CDD:182217" regulatory complement(2072797..2072802) /regulatory_class="ribosome_binding_site" /gene="yedI" /locus_tag="STM1989" /note="putative RBS for yedI; RegulonDB:STMS1H002147" gene 2072966..2073886 /gene="yedA" /locus_tag="STM1990" /db_xref="GeneID:1253511" CDS 2072966..2073886 /gene="yedA" /locus_tag="STM1990" /note="similar to E. coli putative transmembrane subunit (AAC75025.1); Blastp hit to AAC75025.1 (306 aa), 89% identity in aa 1 - 298" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_460941.1" /db_xref="GeneID:1253511" /translation="MRFRQLLPLFGALFALYIIWGSTYFVIRIGVESWPPLMMAGVRF LSAGMLLMAFLLLRGEKLPPLRQTINAALIGLLLLAVGNGLVTVAEHQNVPSGIAAVV VATVPLFTLCFSYFFGIKTRKLEWVGIAIGLAGIILLNSGGNLSGNPWGAILILIGSM SWAFGSVYGSRIALPVGMMAGAIEMLAAGVVLLCAAFLSGEKLATLPGLSGFMAVGYL ALFGSIIAINAYMYLIRNVSPALATSYAYVNPVVAVLLGTGLGGERLSPVEWAALGVI VFAVVLVTLGKYLFPVKAVVTPCKTEDSRQ" misc_feature 2072966..2073838 /gene="yedA" /locus_tag="STM1990" /note="putative DMT superfamily transporter inner membrane protein; Provisional; Region: PRK11272" /db_xref="CDD:183067" gene complement(2073875..2074352) /gene="vsr" /locus_tag="STM1991" /db_xref="GeneID:1253512" CDS complement(2073875..2074345) /gene="vsr" /locus_tag="STM1991" /EC_number="3.1.-.-" /note="patch repair protein; similar to E. coli DNA mismatch endonuclease, patch repair protein (AAC75026.1); Blastp hit to AAC75026.1 (156 aa), 86% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="DNA mismatch endonuclease" /protein_id="NP_460942.1" /db_xref="GeneID:1253512" /translation="MADVHDKATRSKNMRAIATRDTAIEKRLAGLLSAQGITFHTQDA TLPGKPDFVVNDYDCVIFTHGCFWHHHHCYLFKVPATRTAFWLEKIGKNVERDERDIQ RLQALGWRVLIVWECALRGRAKLSDAALAERLEEWICGGGASAQIDTQGIHLLA" misc_feature complement(2073923..2074342) /gene="vsr" /locus_tag="STM1991" /note="G:T-mismatch repair DNA endonuclease Vsr, very short patch repair protein [Replication, recombination and repair]; Region: Vsr; COG3727" /db_xref="CDD:442941" gene complement(2074326..2075768) /gene="dcm" /locus_tag="STM1992" /db_xref="GeneID:1253513" CDS complement(2074326..2075756) /gene="dcm" /locus_tag="STM1992" /note="similar to E. coli DNA cytosine methylase (AAC75027.1); Blastp hit to AAC75027.1 (472 aa), 83% identity in aa 1 - 472" /codon_start=1 /transl_table=11 /product="DNA cytosine methylase" /protein_id="NP_460943.1" /db_xref="GeneID:1253513" /translation="MQENISVTHARNLIADDAGSELQAMLSQLLEIYDVKTLVAHLNG LGEQHWSPAIFKRVMMNAAWHRLSDNELTCLKTELPTPPAHHPHYAFRFIDLFAGIGG IRRGFEAIGGQCVFTSEWNKHAVRTYKANYFCDPLQHRFNEDIRDITLSHREGVSDDE AAEHIRQHIPQHDVLLAGFPCQPFSLAGVSKKNALGRAHGFACETQGTLFFDVVRIID ARRPALFVLENVKNLKSHDQGNTFRIIMQTLDELGYDVADAADNGPDDPKIIDGQHFL PQHRERIVLVGFRRDLNLKTDFTLRNIARCYPPRRPTLAELLEPVVEAKYILTPVLWK YLYRYAKKHQARGNGFGYGMVYPDNPESVARTLSARYYKDGAEILIDRGWDMAKGEVN FDDAGNQQHRPRRLTPRECARLMGFEAPQTYQFRIPVSDTQAYRQFGNSVVVPVFAAV AKLLEPKIHQAVTLRQRETVDGGRSR" misc_feature complement(2074350..2075756) /gene="dcm" /locus_tag="STM1992" /note="DNA cytosine methylase; Provisional; Region: PRK10458" /db_xref="CDD:236696" regulatory complement(2074347..2074352) /regulatory_class="ribosome_binding_site" /gene="vsr" /locus_tag="STM1991" /note="putative RBS for vsr; RegulonDB:STMS1H002148" regulatory complement(2075763..2075768) /regulatory_class="ribosome_binding_site" /gene="dcm" /locus_tag="STM1992" /note="putative RBS for dcm; RegulonDB:STMS1H002149" gene complement(2075830..2076533) /gene="yedJ" /locus_tag="STM1993" /db_xref="GeneID:1253514" CDS complement(2075830..2076525) /gene="yedJ" /locus_tag="STM1993" /note="similar to E. coli orf, hypothetical protein (AAC75028.1); Blastp hit to AAC75028.1 (231 aa), 73% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_460944.1" /db_xref="GeneID:1253514" /translation="MDSGYWQSQFEDWLRHHHQEQDAAHDIFHFRRVWATAQTLGENS PVDWLVVLSACYFHDIVSLAKNHPQRHRSSILAAAETRRIFLRDFPDFPAEKLAGICH AIEAHSFSAKIAPTTPEAKIVQDADRLEALGAIGLARVFAVSGALGVALFDADDPFAD RRPLNDKQFALDHFQTKLLKLPLTMQTERGKYLAQRNADFLVSYMAKLSAELKGDYET RDDAVIQMFATHQ" misc_feature complement(2075833..2076525) /gene="yedJ" /locus_tag="STM1993" /note="putative hydrolase; Provisional; Region: PRK10119" /db_xref="CDD:182251" misc_feature complement(order(2076145..2076147,2076349..2076354, 2076439..2076441)) /gene="yedJ" /locus_tag="STM1993" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238032" misc_feature complement(2076349..2076351) /gene="yedJ" /locus_tag="STM1993" /note="Mg2+ binding site [ion binding]; other site" /db_xref="CDD:238032" regulatory complement(2076528..2076533) /regulatory_class="ribosome_binding_site" /gene="yedJ" /locus_tag="STM1993" /note="putative RBS for yedJ; RegulonDB:STMS1H002150" gene complement(2076617..2076928) /locus_tag="STM1994" /db_xref="GeneID:1253515" CDS complement(2076617..2076916) /locus_tag="STM1994" /note="similar to E. coli orf, hypothetical protein (AAC75029.1); Blastp hit to AAC75029.1 (127 aa), 56% identity in aa 32 - 123" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460945.1" /db_xref="GeneID:1253515" /translation="MSTREDNATRSMGGKLALWVFYTFCGYFIWAMARCVWLMSAIQT EPVLGPISTPGSATEKWLNALSLGVVWLILGSIAWYTRPRKNRAYPADTKPETRK" misc_feature complement(2076659..2076904) /locus_tag="STM1994" /note="cell division protein DrpB; Region: div_DrpB_YedR; NF038392" /db_xref="CDD:439684" regulatory complement(2076923..2076928) /regulatory_class="ribosome_binding_site" /locus_tag="STM1994" /note="putative RBS for STM1994; RegulonDB:STMS1H002151" gene 2077561..2078762 /gene="ompS" /locus_tag="STM1995" /db_xref="GeneID:1253516" regulatory 2077561..2077566 /regulatory_class="ribosome_binding_site" /gene="ompS" /locus_tag="STM1995" /note="putative RBS for ompS; RegulonDB:STMS1H002152" CDS 2077566..2078762 /gene="ompS" /locus_tag="STM1995" /note="similar to E. coli putative outer membrane protein (AAC74459.1); Blastp hit to AAC74459.1 (377 aa), 71% identity in aa 1 - 236, 60% identity in aa 174 - 377" /codon_start=1 /transl_table=11 /product="putative porin" /protein_id="NP_460946.1" /db_xref="GeneID:1253516" /translation="MNRKVLALLVPALLVAGAANAAEVYNKNGNKLDLYGKVDGLRYF SDNAGDDGDQSYARFGFKGETQINDMLTGYGQWEYNIKVNTTEGEGANSWTRLGFAGL KFGEYGSFDYGRNYGVIYDIEAWTDALPEFGGDTYTQTDVYMLGRTNGVATYRNTDFF GLVEGLNFALQYQGNNEDPGAGEGTANGSDADSGTRKLARENGDGFGMSTSYDFDFGL SLGAAYSSSDRTDNQVASGRGDGHHYYGNSYAGGETAEAWTVGVKYDAYNVYLAAMYA ETRNMTYYGGGDGGDGGIANKTQNFEVVAQYQFDFGLRPSIAYLQSKGKDLGGQDMDS RGNYRYTDKDLVKYVDVGMTYYFNKNMSTYVDYKINLLDEDDDFYANNGIATDDIVGV GLVYQF" misc_feature 2077614..2078759 /gene="ompS" /locus_tag="STM1995" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" misc_feature order(2077653..2077655,2077659..2077661,2077677..2077679, 2077683..2077691,2077752..2077766,2077782..2077784, 2077788..2077796,2077800..2077802,2077806..2077817, 2077848..2077853,2077857..2077871,2077899..2077907, 2078004..2078006,2078010..2078015,2078634..2078639, 2078646..2078648,2078745..2078747,2078751..2078753, 2078757..2078759) /gene="ompS" /locus_tag="STM1995" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:238208" misc_feature order(2077674..2077676,2077737..2077739,2077851..2077853, 2077944..2077946,2078004..2078006) /gene="ompS" /locus_tag="STM1995" /note="eyelet of channel [active]" /db_xref="CDD:238208" gene complement(2079222..2079448) /gene="cspB" /locus_tag="STM1996" /db_xref="GeneID:1253517" CDS complement(2079222..2079434) /gene="cspB" /locus_tag="STM1996" /note="similar to E. coli cold shock-like protein (AAC74625.1); Blastp hit to AAC74625.1 (70 aa), 84% identity in aa 1 - 70" /codon_start=1 /transl_table=11 /product="putative cold-shock protein" /protein_id="NP_460947.1" /db_xref="GeneID:1253517" /translation="MTTKITGLVKWFNPEKGFGFITPKDGSKDVFVHFSAIQSNEFRT LNENQEVEFSVEQGPKGPSAVNVVAL" misc_feature complement(2079225..2079434) /gene="cspB" /locus_tag="STM1996" /note="Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains...; Region: S1_like; cl09927" /db_xref="CDD:471952" misc_feature complement(order(2079255..2079257,2079342..2079344, 2079375..2079377,2079402..2079404)) /gene="cspB" /locus_tag="STM1996" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:239905" misc_feature complement(order(2079336..2079347,2079366..2079386)) /gene="cspB" /locus_tag="STM1996" /note="RNA-binding motif [active]" /db_xref="CDD:239905" regulatory complement(2079443..2079448) /regulatory_class="ribosome_binding_site" /gene="cspB" /locus_tag="STM1996" /note="putative RBS for cspB; RegulonDB:STMS1H002153" gene complement(2079889..2081171) /gene="umuC" /locus_tag="STM1997" /db_xref="GeneID:1253518" CDS complement(2079889..2081157) /gene="umuC" /locus_tag="STM1997" /note="component of DNA polymerase V with UmuD'; UMUC protein. (SW:UMUC_SALTY)" /codon_start=1 /transl_table=11 /product="error-prone repair protein" /protein_id="NP_460948.1" /db_xref="GeneID:1253518" /translation="MFALCDVNSFYASCETVFRPDLCGRPVVVLSNNDGCVIACSAEA KQLGIAPGEPYFKQKERFRRSGVVCFSSNYELYADMSNRVMTTLEEMVPRVEIYSIDE AFCDLTGVRNCRDLTDFGREIRATVLKRTHLTVGVGIAQTKTLAKLANHAAKKWQRQT DGVVDLSNIDRQRRLLALIPVEDVWGVGRRISKKLNALGIKTALDLSEQSTWIIRKHF NVVLERTVRELRGEPCLELEEFAPAKQEIVCSRSFGERVTDYEEMRQAVYSYAARAAE KLRGEHQYCRFISTFVKTSPFALNEPYYGNSAAVTLLTPTQDSRDIINAAVKCLDKIW RDGHRYQKAGVMLGDFFSQGVAQLNLFDDNAPRAGSAKLMEVLDHLNAKDGKGTLYFA GQGMSQQWAMKREMLSPRYTTRYSDLLRVK" misc_feature complement(2079892..2081157) /gene="umuC" /locus_tag="STM1997" /note="translesion error-prone DNA polymerase V subunit UmuC; Region: umuC; PRK03609" /db_xref="CDD:179607" misc_feature complement(order(2080696..2080698,2080852..2080857, 2081023..2081025,2081032..2081034,2081125..2081130, 2081137..2081142)) /gene="umuC" /locus_tag="STM1997" /note="active site" /db_xref="CDD:176454" misc_feature complement(order(2080252..2080254,2080258..2080272, 2080327..2080329,2080408..2080425,2080498..2080500, 2080585..2080605,2080852..2080854,2080861..2080863)) /gene="umuC" /locus_tag="STM1997" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:176454" gene complement(2081160..2081667) /gene="umuD" /locus_tag="STM1998" /db_xref="GeneID:1253519" CDS complement(2081160..2081579) /gene="umuD" /locus_tag="STM1998" /EC_number="3.4.21.-" /note="LexA homologs, RecA-mediated autopeptidases; UMUD protein. (SW:UMUD_SALTY)" /codon_start=1 /transl_table=11 /product="error-prone repair: SOS-response transcriptional repressor" /protein_id="NP_460949.1" /db_xref="GeneID:1253519" /translation="MEFFRPTELREIIPLPFFSYLVPCGFPSPAADYIEQRIDLNELL VSHPSSTYFVKASGDSMIEAGISDGDLLVVDSSRNADHGDIVIAAIEGEFTVKRLQLR PTVQLIPMNGAYRPIPVGSEDTLDIFGVVTFIIKAVS" misc_feature complement(2081163..2081579) /gene="umuD" /locus_tag="STM1998" /note="translesion error-prone DNA polymerase V autoproteolytic subunit; Region: PRK10276" /db_xref="CDD:182350" misc_feature complement(order(2081289..2081291,2081400..2081402)) /gene="umuD" /locus_tag="STM1998" /note="Catalytic site [active]" /db_xref="CDD:119397" regulatory complement(2081166..2081171) /regulatory_class="ribosome_binding_site" /gene="umuD" /locus_tag="STM1998" /note="putative RBS for umuC; RegulonDB:STMS1H002154" regulatory complement(2081586..2081591) /regulatory_class="ribosome_binding_site" /gene="umuD" /locus_tag="STM1998" /note="putative RBS for umuD; RegulonDB:STMS1H002155" regulatory complement(2081643..2081651) /regulatory_class="minus_10_signal" /gene="umuD" /locus_tag="STM1998" /note="putative -10_signal for umuD; RegulonDB:STMLTH004523" regulatory complement(2081659..2081667) /regulatory_class="minus_35_signal" /gene="umuD" /locus_tag="STM1998" /note="putative -35_signal for umuD; RegulonDB:STMLTH004523" gene complement(2081706..2081867) /locus_tag="STM1999" /db_xref="GeneID:1253520" CDS complement(2081706..2081867) /locus_tag="STM1999" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460950.1" /db_xref="GeneID:1253520" /translation="MGAGQKINCCEGNALARGDNLRCGTVDAVQKIWPPGWLKYAHMT IQPENLQNP" gene complement(2082174..2082260) /gene="serU" /locus_tag="STM2000" /db_xref="GeneID:1253521" tRNA complement(2082174..2082260) /gene="serU" /locus_tag="STM2000" /product="tRNA-Ser" /db_xref="GeneID:1253521" gene 2082348..2083145 /gene="yeeI" /locus_tag="STM2001" /db_xref="GeneID:1253522" CDS 2082348..2083145 /gene="yeeI" /locus_tag="STM2001" /note="similar to E. coli orf, hypothetical protein (AAC75041.1); Blastp hit to AAC75041.1 (278 aa), 85% identity in aa 14 - 263" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_460951.1" /db_xref="GeneID:1253522" /translation="MIKWPWKAQEITQNEDWPWDDALAIPLLVNLTAQEQARLIALAE RFLQQKRLVALQGFELDSLKSARIALIFCLPILELGIEWLDGFHEVLIYPAPFVVDDE WEDDIGLVHSQRVVQSGQSWQQGPIILNWLDIQDSFDASGFNLIIHEVAHKLDMRNGD RASGIPFIPLRDVAGWEHDLHAAMNNIQDEIDLVGESAASIDAYAATDPAECFAVLSE YFFSAPELFAPRFPALWQRFCQFYRQDPSQRLRVSAAEGDYGEESEH" misc_feature 2082348..2083127 /gene="yeeI" /locus_tag="STM2001" /note="DgsA anti-repressor MtfA; Provisional; Region: PRK15410" /db_xref="CDD:185308" gene 2083247..2083319 /gene="asnT" /locus_tag="STM2002" /db_xref="GeneID:1253523" tRNA 2083247..2083319 /gene="asnT" /locus_tag="STM2002" /product="tRNA-Asn" /db_xref="GeneID:1253523" gene 2083489..2083807 /locus_tag="STM2003" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1253524" gene 2084217..2084289 /gene="asnT" /locus_tag="STM2004" /db_xref="GeneID:1253525" tRNA 2084217..2084289 /gene="asnT" /locus_tag="STM2004" /product="tRNA-Asn" /db_xref="GeneID:1253525" gene 2084449..2084928 /locus_tag="STM2005" /db_xref="GeneID:1253526" regulatory 2084449..2084454 /regulatory_class="ribosome_binding_site" /locus_tag="STM2005" /note="putative RBS for STM2005; RegulonDB:STMS1H002159" CDS 2084455..2084928 /locus_tag="STM2005" /codon_start=1 /transl_table=11 /product="putative endoprotease" /protein_id="NP_460952.1" /db_xref="GeneID:1253526" /translation="MALTDTAGGTQTDPGTGKPSENPPAAPNKPTPPKEETPPGAPEK YAFTAPEGQELDTSALAQFEPVARELNLTQEQAQKLVDVYPKVLAGVQQQQAESWQKQ TEDWAAAVKADKDIGGDKLASNLGAAQRAIDTFGTKELKEYLDGTCARSLVNAAP" misc_feature <2084479..2084895 /locus_tag="STM2005" /note="putative protease; Region: PHA00666" /db_xref="CDD:222808" gene 2085395..2086101 /locus_tag="STM2006" /db_xref="GeneID:2673718" regulatory 2085395..2085400 /regulatory_class="ribosome_binding_site" /locus_tag="STM2006" /note="putative RBS for STM2006; RegulonDB:STMS1H002160" CDS 2085403..2086101 /locus_tag="STM2006" /codon_start=1 /transl_table=11 /product="putative branched chain amino acid transport protein" /protein_id="NP_448412.1" /db_xref="GeneID:2673718" /translation="MGKLGGEMKALAKHCGGSHKTVNDCIHIVQRFDHHLRALNVHIQ RVAQIKVRHIESYIHERLAQGIGKRTLQNEMASLRAVLQQAGRKQVAEHEWLTNKSLG LAGASRSGTRQAITPEHYHHVLETARMKAPGLAAALELARLMGLRSQEAVQSVQWIWG MGTGVGGMWRRCMGKFDSWLRASSGWSRLPPFTVSERLGGGGKYQAALPSPLQSKPES DRTNVEINERTCPE" misc_feature 2085403..2085675 /locus_tag="STM2006" /note="Phage integrase, N-terminal; Region: Phage_int_SAM_2; pfam12834" /db_xref="CDD:432819" misc_feature 2085706..>2085870 /locus_tag="STM2006" /note="DNA breaking-rejoining enzymes, C-terminal catalytic domain; Region: DNA_BRE_C; cl00213" /db_xref="CDD:469662" gene 2086918..2088612 /locus_tag="STM2007" /db_xref="GeneID:1253528" CDS 2086918..2088612 /locus_tag="STM2007" /note="similar to E. coli orf, hypothetical protein (AAC73745.1); Blastp hit to AAC73745.1 (327 aa), 32% identity in aa 130 - 322, 32% identity in aa 60 - 242, 32% identity in aa 17 - 168, 33% identity in aa 59 - 204, 23-1073758628dentity in aa 23 - 106" /codon_start=1 /transl_table=11 /product="putative TPR repeat protein" /protein_id="NP_460954.1" /db_xref="GeneID:1253528" /translation="MPLPYDKEKKLWKVTGWYLESSEETGEVMQSKQIAFEGYTNEEN FANRQRVSVFKSFYESGNLKSIYHYNAQNKRDGKAETYFDEKDKIAETLTFKDGQPEG EYIVYHENGAVESKRYFAQGKIKDGECPHFYDNGVLKQKHSYLNQKLEGPAFEYFPDG KIKGKYSYSKGTIVGTSTEYYSTGKIRGVYHRNNQGENDGTFEQYSEEGKLLSKATYK NGKQLSAQSWYENGHPKEESSFDSEGRKHGAVKEWFSNGKPASSKMYKHDVLDGDFEK WYENGHRESVYPYKNGMLNGDAKHWNEQGKLTYTTEYKDDKKQGADRRWSERTGKLVE EVMFANDERNGLKREFNDRTGKVLSALPYVDGDKEGTEEAYDEDGIKYIRCYHNDEEL SELYAPTDVTNKAKQGDSTAQYHLGKYEFECTNYDAAMKWLTQSAEQNHPGALLFLAY AYNDGDGVAQDSKKYLSYLFKAAELGESDAQLEVGYLNLIGEGMPKNLPEAYKWIKKS ADQGNAQAHYNLGLMYRNGDGVEKDLNKAKLHLTAAVKGGVKPALAALKELTPQTK" misc_feature 2087011..2087439 /locus_tag="STM2007" /note="Antitoxin component YwqK of the YwqJK toxin-antitoxin module [Defense mechanisms]; Region: YwqK; COG2849" /db_xref="CDD:442097" misc_feature 2087317..2087871 /locus_tag="STM2007" /note="Antitoxin component YwqK of the YwqJK toxin-antitoxin module [Defense mechanisms]; Region: YwqK; COG2849" /db_xref="CDD:442097" misc_feature 2087692..2088090 /locus_tag="STM2007" /note="Antitoxin component YwqK of the YwqJK toxin-antitoxin module [Defense mechanisms]; Region: YwqK; COG2849" /db_xref="CDD:442097" misc_feature 2088103..2088594 /locus_tag="STM2007" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature 2088190..2088279 /locus_tag="STM2007" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 2088298..2088387 /locus_tag="STM2007" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature 2088406..2088495 /locus_tag="STM2007" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" gene 2088663..2090399 /locus_tag="STM2008" /db_xref="GeneID:1253529" regulatory 2088663..2088668 /regulatory_class="ribosome_binding_site" /locus_tag="STM2008" /note="putative RBS for STM2008; RegulonDB:STMS1H002161" CDS 2088669..2090399 /locus_tag="STM2008" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460955.1" /db_xref="GeneID:1253529" /translation="MKFKFATLLTAATVFYSYQSVAQSQQSPDVWSVVEQKLQNAVPL NENTTFKSQAAWFELHRELFMYGPMSRADALLKKLDTQSNDAKFSLNHEASWIAENNS PDAAMVFLSKIGLDKPSSITAYESYVDGWVNRKQPEKALALLSKNADARNFYLATVLE SCHSEPDKTAAIYNENYADKIVVPYTQLKMLLIIAKQYHAKGDTAKALVYADSALKMF DTAIAQQPSAEAYRYQEYLDLMEIYYATGNKEKAMALSARLRKATGNKGSYFQYSLPG LLSFYKKNELTQNYQETLSTCVTQVDKIFNFAPSPRIEMELIDLLSKLDDVALMNKRI DLLMSAPEYTCYDDRYCYEYKIKALKNLFQHKQNAVAEKHIATLSAEAQTLTFAEWED ATNEIGEVLKEIGHPEAAQKLAVSAEAIYLSQAKAWPDEDMSRSFQRLAELYGYGNDT VNAKRVLHQHVPSLEEEAMIDHYMNAKQWSQARELMINADRVDNKNLMLLRQICSENT PECQEHITFTLKKLTTQASITRQDDTGNQQLYQIGNIFHRLGIIPGAEQQALIQALYN KAAEPKKATP" gene complement(2091304..2092770) /gene="amn" /locus_tag="STM2009" /db_xref="GeneID:1253530" CDS complement(2091304..2092758) /gene="amn" /locus_tag="STM2009" /EC_number="3.2.2.4" /note="similar to E. coli AMP nucleosidase (AAC75046.1); Blastp hit to AAC75046.1 (484 aa), 90% identity in aa 1 - 484" /codon_start=1 /transl_table=11 /product="AMP nucleosidase" /protein_id="NP_460956.1" /db_xref="GeneID:1253530" /translation="MENKGTNLTPEQALDRLEELYEQSVNALREAIADYVDNGTLPDP HARLNGLFVYPSLSVSWDGATPNPPKTRAFGRFTHPGCYTTTVTRPALFRAYLLEQLN LVYHDYGAHIAVEASHHEIPYPYVIDGSALTLDRSMSAGLTRHFPTTELAQIGDETAD GLFHPGEFYPLSHFDARRVDFSLARLRHYTGTPVEHFQPFVLFTNYTRYVDEFVRWGC SQILDPDSPYIALSCAGGIWITAETEAPEEAISDLAWKKHQMPAWHLVTADGQGITLV NIGVGPSNAKTICDHLAVLRPDVWLMIGHCGGLRESQAIGDYVLAHAYLRDDHVLDAV LPPDIPIPSIAEVQRALYDATKAVSGMPGEEVKQRLRTGTVVTTDDRNWELRYSASAL RFNLSRAVAIDMESATIAAQGYRFRVPYGTLLCVSDKPLHGEIKLPGQANRFYEGAIS EHLQIGIRAIDLLRAEGDRLHSRKLRTFNEPPFR" misc_feature complement(2091307..2092758) /gene="amn" /locus_tag="STM2009" /note="AMP nucleosidase; Provisional; Region: PRK08292" /db_xref="CDD:236222" regulatory complement(2092765..2092770) /regulatory_class="ribosome_binding_site" /gene="amn" /locus_tag="STM2009" /note="putative RBS for amn; RegulonDB:STMS1H002162" gene 2092798..2092965 /locus_tag="STM2010" /db_xref="GeneID:1253531" regulatory 2092798..2092803 /regulatory_class="ribosome_binding_site" /locus_tag="STM2010" /note="putative RBS for STM2010; RegulonDB:STMS1H002163" CDS 2092804..2092965 /locus_tag="STM2010" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_448416.1" /db_xref="GeneID:1253531" /translation="MTAKEETKGVSVRVATVNMNPLKRKENYLSATIIAQKEGYWYSH LLSSLQLVI" gene complement(2092954..2093284) /locus_tag="STM2011" /db_xref="GeneID:1253532" CDS complement(2092954..2093280) /locus_tag="STM2011" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_460958.1" /db_xref="GeneID:1253532" /translation="MVDNIEQQVYELVRPYAGTYLFNIKQVELTPEIDLDTDLSIDEL EAEDLMNKFFEELNVERGNFRIETYFPNHPFSWHPFKKTEPVPVPDFTISMLIESAKA GKWLYD" misc_feature complement(2092957..2093277) /locus_tag="STM2011" /note="Protein of unknown function (DUF1493); Region: DUF1493; pfam07377" /db_xref="CDD:399982" regulatory complement(2093279..2093284) /regulatory_class="ribosome_binding_site" /locus_tag="STM2011" /note="putative RBS for STM2011; RegulonDB:STMS1H002164" gene complement(2094162..2094234) /gene="asnW" /locus_tag="STM2012" /db_xref="GeneID:1253533" tRNA complement(2094162..2094234) /gene="asnW" /locus_tag="STM2012" /product="tRNA-Asn" /db_xref="GeneID:1253533" gene complement(2094374..2095831) /gene="yeeO" /locus_tag="STM2013" /db_xref="GeneID:1253534" CDS complement(2094374..2095831) /gene="yeeO" /locus_tag="STM2013" /note="similar to E. coli orf, hypothetical protein (AAC75048.1); Blastp hit to AAC75048.1 (547 aa), 82% identity in aa 53 - 533" /codon_start=1 /transl_table=11 /product="putative MATE family transport protein" /protein_id="NP_460959.1" /db_xref="GeneID:1253534" /translation="MWFQLSSLRSILNVSTALRQAVVRTPWYAKRKSYKVLFWREITP LAIPIFLENTCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVIMAFFAAIDLGTTVV VAFSLGKRDRRRARAAARQSLVIMTLFAVVLAVVIHYFGSEIINIVAGEATPEVKGLA LTYLELTVLSYPAAAIALIGSGALRGAGNTKIPLMINGGMNILNIIISSILIYGAFSW QGLGFAGAGLGLTISRYIGAVAIIWVLMIGFNPALRIPLKSYLKPLNFGIIWEVMGIG IPASIESVLFNGGKLLTQMFVAGMGTNVIAGNFIAFSVAALINLPGNALGSASTIITG KRLGTGQIGQAERQLRHVFWMSTIVLTAIAWGTAPFAGLFASFYTQEQDVKEVVKVLL WLNAAFMPIWAAAWVLPSGFKGARDVRFAMWVSMLGMWGCRVVAGYTLGIVLGMGVVG VWLGMFLDWAVRGALFYWRLISGRWLWRYPRVKRE" misc_feature complement(2094377..2095798) /gene="yeeO" /locus_tag="STM2013" /note="EmmdR/YeeO family multidrug/toxin efflux MATE transporter; Region: PRK10189" /db_xref="CDD:182293" gene 2095992..2096064 /gene="asnU" /locus_tag="STM2014" /db_xref="GeneID:1253535" tRNA 2095992..2096064 /gene="asnU" /locus_tag="STM2014" /product="tRNA-Asn" /db_xref="GeneID:1253535" gene complement(2096293..2097236) /gene="erfK" /locus_tag="STM2015" /db_xref="GeneID:1253536" CDS complement(2096293..2097222) /gene="erfK" /locus_tag="STM2015" /note="protein ERKF/SRFK precursor. (SW:ERFK_SALTY)" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_460960.1" /db_xref="GeneID:1253536" /translation="MRRITPFFPFFVLLVSHFSLAISYPLPPEGSRLVGQPVTIAVPQ NNTQPLESFAARYGQGLSNMLEANPGVDVFLPQSGSTLVVPQQLILPDTVREGIVVNV AEMRLYYYPAGTNTVEVLPIGIGQAGRETPRNWVTAVERKQDGPVWVPTANTRREYAK EGKTLPAMVPAGPDNPMGLYAIYIGRLYAIHGTNANFGIGLRVSQGCIRLRNDDIKYL FDHVPVGTRVQIIDRPVKFSVEPDGSRWLEVHEPLSRNRAEFESDKKVPLPVTPVLRT FIKGDDVDTSRVNEVLERRSGMPVNISAGRPGL" misc_feature complement(2096308..2097222) /gene="erfK" /locus_tag="STM2015" /note="L,D-transpeptidase; Provisional; Region: PRK10190" /db_xref="CDD:182294" regulatory complement(2097231..2097236) /regulatory_class="ribosome_binding_site" /gene="erfK" /locus_tag="STM2015" /note="putative RBS for erfK; RegulonDB:STMS1H002166" gene complement(2097300..2098383) /gene="cobT" /locus_tag="STM2016" /db_xref="GeneID:1253537" CDS complement(2097300..2098370) /gene="cobT" /locus_tag="STM2016" /EC_number="2.4.2.21" /note="nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase. (SW:COBT_SALTY)" /codon_start=1 /transl_table=11 /product="nicotinate-nucleotide dimethylbenzimidazole-P phosphoribosyl transferase" /protein_id="NP_460961.1" /db_xref="GeneID:1253537" /translation="MQTLHALLRDIPAPDAEAMARAQQHIDGLLKPPGSLGRLETLAV QLAGMPGLNGTPQVGEKAVLVMCADHGVWDEGVAVSPKIVTAIQAANMTRGTTGVCVL AAQAGAKVHVIDVGIDAEPIPGVVNMRVARGCGNIAVGPAMSRLQAEALLLEVSRYTC DLAQRGVTLFGVGELGMANTTPAAAMVSVFTGSDAKEVVGIGANLPPSRIDNKVDVVR RAIAINQPNPRDGIDVLSKVGGFDLVGMTGVMLGAARCGLPVLLDGFLSYSAALAACQ IAPAVRPYLIPSHFSAEKGARIALAHLSMEPYLHMAMRLGEGSGAALAMPIVEAACAM FHNMGELAASNIVLPEGNANAT" misc_feature complement(2097321..2098370) /gene="cobT" /locus_tag="STM2016" /note="NaMN:DMB phosphoribosyltransferase [Coenzyme transport and metabolism]; Region: CobT; COG2038" /db_xref="CDD:441641" regulatory complement(2098378..2098383) /regulatory_class="ribosome_binding_site" /gene="cobT" /locus_tag="STM2016" /note="putative RBS for cobT; RegulonDB:STMS1H002167" gene complement(2098397..2099156) /gene="cobS" /locus_tag="STM2017" /db_xref="GeneID:1253538" CDS complement(2098397..2099140) /gene="cobS" /locus_tag="STM2017" /note="cobalamin [5'-phosphate] synthase. (SW:COBS_SALTY)" /codon_start=1 /transl_table=11 /product="cobalamin 5'-phosphate synthase" /protein_id="NP_460962.1" /db_xref="GeneID:1253538" /translation="MSKLFWAMLAFISRLPVPSRWSQGLDFEQYSRGIVMFPFIGLIL GGVSGLIFILLQPWCGIPLAALFCILALALLTGGFHLDGLADTCDGIFSARRRERMLE IMRDSRLGTHGGLALIFVLLAKILVVSELALRGTPMLAALAAACAAGRGSAVLLMYRH RYAREEGLGNVFIGKVSGRQTCITLGLAVIVATVLLPGMQGLAAMVVTCAAIFILGQL LKRTLGGQTGDTLGAAIELGELIFLLALL" misc_feature complement(2098400..2099140) /gene="cobS" /locus_tag="STM2017" /note="cobalamin synthase; Reviewed; Region: cobS; PRK00235" /db_xref="CDD:234697" gene complement(2099137..2099693) /gene="cobU" /locus_tag="STM2018" /db_xref="GeneID:1253539" CDS complement(2099137..2099682) /gene="cobU" /locus_tag="STM2018" /note="(SW:COBU_SALTY); cobinamide phosphate guanylyltransferase" /codon_start=1 /transl_table=11 /product="cobinamide kinase" /protein_id="NP_460963.1" /db_xref="GeneID:1253539" /translation="MMILVTGGARSGKSRHAEALIGDAPQVLYIATSQILDDEMAARI QHHKDGRPAHWRTAECWRHLDTLITADLAPDDAILLECITTMVTNLLFALGGENDPEQ WDYAAMERAIDDEIQILIAACQRCPAKVVLVTNEVGMGIVPENRLARHFRDIAGRVNQ RLAAAADEVWLVVSGIGVKIK" misc_feature complement(2099140..2099682) /gene="cobU" /locus_tag="STM2018" /note="adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated; Region: cobU; PRK05800" /db_xref="CDD:235612" misc_feature complement(order(2099155..2099157,2099161..2099163, 2099194..2099196,2099203..2099208,2099212..2099217, 2099227..2099229,2099260..2099262,2099266..2099277, 2099647..2099649,2099653..2099661)) /gene="cobU" /locus_tag="STM2018" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:410861" misc_feature complement(order(2099428..2099430,2099437..2099442, 2099512..2099514,2099530..2099532,2099539..2099541, 2099578..2099580,2099584..2099592,2099596..2099598, 2099641..2099661)) /gene="cobU" /locus_tag="STM2018" /note="GTP binding site [chemical binding]; other site" /db_xref="CDD:410861" misc_feature complement(2099542..2099544) /gene="cobU" /locus_tag="STM2018" /note="putative catalytic site [active]" /db_xref="CDD:410861" regulatory complement(2099151..2099156) /regulatory_class="ribosome_binding_site" /gene="cobU" /locus_tag="STM2018" /note="putative RBS for cobS; RegulonDB:STMS1H002168" gene complement(2099679..2101205) /gene="cbiP" /locus_tag="STM2019" /db_xref="GeneID:1253540" CDS complement(2099679..2101199) /gene="cbiP" /locus_tag="STM2019" /note="cobyric acid synthase. (SW:CBIP_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460964.1" /db_xref="GeneID:1253540" /translation="MTQAVMLQGTASDVGKSVLAAGLCRIFYQDGLRTAPFKSQNMAL NSGITPDGKEMGRAQIFQAEAAGITPDVRMNPVLLKPTSDRQAQVVLMGKVATNMDAV SYHDYKPRLREQILAVYNSLAQEYDVIVLEGAGSPAEINLRDRDIVNMGMAEMAQCPV ILVADIDRGGVFAAIYGTLALLHKQERDRVKGVIINKFRGDVALLYSGIEQIESLTGV PVLGVMPWLDVDLEDEDGVALQNDKYRGNAPRDITIAIVQLPHISNFTDFNALAAQPD VRIRYIRRPEALTDVDLVILPGSKNTLSDLAWLRESGMADAVLQTHRQGVPVMGICGG YQMLGDTIVDEVESGLGTQPGLGLLNTITRFAQDKTTTQVNATMSGELPGWLAAAAGL PVRGYEIHMGETVLQEGCCTAMTLQKNGCSVADGAVTADGLAFGTYLHGLFDSDAFTR AVVNGLRARKGLAPWETTFCYADHKARQFDLLAEAMRQHIDIDKIYTIMQQHQEPV" misc_feature complement(2099700..2101199) /gene="cbiP" /locus_tag="STM2019" /note="Cobyric acid synthase [Coenzyme transport and metabolism]; Region: CobQ; COG1492" /db_xref="CDD:441101" regulatory complement(2099688..2099693) /regulatory_class="ribosome_binding_site" /gene="cobU" /locus_tag="STM2018" /note="putative RBS for cobU; RegulonDB:STMS1H002169" gene complement(2101196..2102017) /gene="cbiO" /locus_tag="STM2020" /db_xref="GeneID:1253541" CDS complement(2101196..2102011) /gene="cbiO" /locus_tag="STM2020" /note="cobalt transport atp-binding protein CBIO. (SW:CBIO_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460965.1" /db_xref="GeneID:1253541" /translation="MLATSDLWFRYQNEPVLKGLNMDFSLSPVTGLVGANGCGKSTLF MNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFS LRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL DEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG APGEVFACTEAMEHAGLTQPWLVKLHTQLGLPLCKTETEFFHRMQKCAFREAS" misc_feature complement(2101199..2102011) /gene="cbiO" /locus_tag="STM2020" /note="energy-coupling factor ABC transporter ATP-binding protein; Region: cbiO; PRK13638" /db_xref="CDD:184198" regulatory complement(2101200..2101205) /regulatory_class="ribosome_binding_site" /gene="cbiO" /locus_tag="STM2020" /note="putative RBS for cbiP; RegulonDB:STMS1H002170" regulatory complement(2102012..2102017) /regulatory_class="ribosome_binding_site" /gene="cbiO" /locus_tag="STM2020" /note="putative RBS for cbiO; RegulonDB:STMS1H002171" gene complement(2102020..2102703) /gene="cboQ" /locus_tag="STM2021" /db_xref="GeneID:1253542" CDS complement(2102020..2102697) /gene="cboQ" /locus_tag="STM2021" /note="cobalt transport protein CBIQ. (SW:CBIQ_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460966.1" /db_xref="GeneID:1253542" /translation="MTGLDRLSYQSRWAHVAPQRKFLLWLAMMILAFVLPPVGQGIEL LIIAGLSCWLLRISLWRWCRWMAIPFGFLLVGVITIIFSISREPQMLLAGISVGPYWI GITRAGVVTANETFWRSLTALSATLWLVMNLPFPQLISLLKRAHIPRLLTEQILLTWR FLFILLDEAVAIRRAQTLRFGYCSLPNGYRSLAMLAGLLFTRVLMRYQQMTTTLDIKL YQGDFHL" misc_feature complement(2102023..2102697) /gene="cboQ" /locus_tag="STM2021" /note="energy-coupling factor ABC transporter transmembrane protein; Region: PRK15485" /db_xref="CDD:185382" misc_feature complement(order(2102029..2102031,2102035..2102037, 2102053..2102058,2102065..2102067,2102077..2102082, 2102086..2102091,2102095..2102103,2102107..2102115, 2102119..2102124,2102188..2102193,2102200..2102205, 2102212..2102217,2102221..2102229,2102233..2102238, 2102248..2102250,2102293..2102295,2102308..2102313, 2102320..2102322,2102341..2102343,2102353..2102355, 2102461..2102466,2102473..2102478,2102488..2102490, 2102599..2102604,2102611..2102616,2102620..2102625)) /gene="cboQ" /locus_tag="STM2021" /note="S component interface [polypeptide binding]; other site" /db_xref="CDD:410987" misc_feature complement(order(2102032..2102040,2102047..2102064, 2102068..2102073,2102080..2102082,2102206..2102211, 2102215..2102220,2102227..2102229,2102239..2102241)) /gene="cboQ" /locus_tag="STM2021" /note="A' component interface [polypeptide binding]; other site" /db_xref="CDD:410987" misc_feature complement(order(2102095..2102097,2102104..2102109, 2102116..2102118,2102155..2102178)) /gene="cboQ" /locus_tag="STM2021" /note="A component interface [polypeptide binding]; other site" /db_xref="CDD:410987" gene complement(2102684..2102971) /gene="cbiN" /locus_tag="STM2022" /db_xref="GeneID:1253543" CDS complement(2102684..2102965) /gene="cbiN" /locus_tag="STM2022" /note="cobalt transport protein CBIN. (SW:CBIN_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460967.1" /db_xref="GeneID:1253543" /translation="MKKTLMLLAMVVALVILPFFINHGGEYGGSDGEAESQIQAIAPQ YKPWFQPLYEPASGEIESLLFTLQGSLGAAVIFYILGYCKGKQRRDDRA" misc_feature complement(2102687..2102965) /gene="cbiN" /locus_tag="STM2022" /note="energy-coupling factor ABC transporter substrate-binding protein; Region: PRK02898" /db_xref="CDD:179494" regulatory complement(2102698..2102703) /regulatory_class="ribosome_binding_site" /gene="cbiN" /locus_tag="STM2022" /note="putative RBS for cboQ; RegulonDB:STMS1H002172" regulatory complement(2102966..2102971) /regulatory_class="ribosome_binding_site" /gene="cbiN" /locus_tag="STM2022" /note="putative RBS for cbiN; RegulonDB:STMS1H002173" gene complement(2102967..2103709) /gene="cbiM" /locus_tag="STM2023" /db_xref="GeneID:1253544" CDS complement(2102967..2103704) /gene="cbiM" /locus_tag="STM2023" /note="CBIM protein. (SW:CBIM_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460968.3" /db_xref="GeneID:1253544" /translation="MKLEQQLRQLSFSGLAAALLLMVVPQQAFAMHIMEGFLPPVWAL AWWLLFLPCLWYGLVRLRRIVQEDNHQKVLLALCGAFIFVLSALKIPSVTGSCSHPTG VGLAVILFGPGVVAILGAVVLLFQALLLAHGGLTTLGANGMSMAVIGPVVGYLVWKMA CRAGLRRDVAVFLCAMLADLATYFVTSVQLGVAFPDPHAGATGSVVKFMGIFCLTQIP VAIAEGLLTVMIYDQLTKRQVITVQGH" misc_feature complement(2102970..2103614) /gene="cbiM" /locus_tag="STM2023" /note="energy-coupling factor ABC transporter permease; Region: PRK08319" /db_xref="CDD:181384" gene complement(2103701..2104422) /gene="cbiL" /locus_tag="STM2024" /db_xref="GeneID:1253545" CDS complement(2103701..2104414) /gene="cbiL" /locus_tag="STM2024" /EC_number="2.1.1.130" /note="precorrin-2 C20-methyltransferase. (SW:CBIL_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460969.1" /db_xref="GeneID:1253545" /translation="MNGKLYALSTGPGAPDLITVRAARILGSLDILYAPAGRKGGDSL ALSIVRDYLGEQTEVRCCHFPMSADGAEKEAVWNEVAAALTAEVEAGKQVGFITLGDA MLFSTWIFLLQRIGCPEWLEIVPGVTSFAAIAARAKMPLAIERQSLAVISCTAPEAEI AQALQQHDSLVLMKVYGRFARIKALLAQAGLLECALMMSEATLPGEQCWRHLHEVNDD RPLPYFSTILVNKQWEYAE" misc_feature complement(2103713..2104411) /gene="cbiL" /locus_tag="STM2024" /note="cobalt-factor II C(20)-methyltransferase; Region: PRK05576" /db_xref="CDD:235512" misc_feature complement(order(2103737..2103745,2103812..2103823, 2103896..2103901,2103959..2103961,2104016..2104018, 2104028..2104033,2104097..2104105,2104112..2104120, 2104175..2104177,2104379..2104381)) /gene="cbiL" /locus_tag="STM2024" /note="putative active site [active]" /db_xref="CDD:381172" misc_feature complement(order(2103737..2103748,2103812..2103817, 2103821..2103823,2103893..2103898,2104016..2104018, 2104028..2104033,2104097..2104105,2104112..2104120, 2104379..2104381)) /gene="cbiL" /locus_tag="STM2024" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:381172" misc_feature complement(order(2103911..2103916,2103938..2103940, 2103959..2103979,2103992..2104003,2104010..2104015, 2104019..2104027,2104031..2104042,2104046..2104048, 2104079..2104081,2104085..2104090,2104100..2104114, 2104346..2104348,2104352..2104372)) /gene="cbiL" /locus_tag="STM2024" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:381172" regulatory complement(2103704..2103709) /regulatory_class="ribosome_binding_site" /gene="cbiL" /locus_tag="STM2024" /note="putative RBS for cbiM; RegulonDB:STMS1H002174" gene complement(2104411..2105212) /gene="cbiK" /locus_tag="STM2025" /db_xref="GeneID:1253546" CDS complement(2104411..2105205) /gene="cbiK" /locus_tag="STM2025" /note="cobalt chelatase. (SW:CBIK_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460970.1" /db_xref="GeneID:1253546" /translation="MKKALLVVSFGTSYHDTCEKNIVACERDLAASCPDRDLFRAFTS GMIIRKLRQRDGIDIDTPLQALQKLAAQGYQDVAIQSLHIINGDEYEKIVREVQLLRP LFTRLTLGVPLLSSHNDYVQLMQALRQQMPSLRQTEKVVFMGHGASHHAFAAYACLDH MMTAQRFPARVGAVESYPEVDILIDSLRDEGVTGVHLMPLMLVAGDHAINDMASDDGD SWKMRFNAAGIPATPWLSGLGENPAIRAMFVAHLHQALNMAVEEAA" misc_feature complement(2104438..2105199) /gene="cbiK" /locus_tag="STM2025" /note="Cobalt chelatase (CbiK); Region: CbiK; pfam06180" /db_xref="CDD:399291" regulatory complement(2104417..2104422) /regulatory_class="ribosome_binding_site" /gene="cbiL" /locus_tag="STM2024" /note="putative RBS for cbiL; RegulonDB:STMS1H002175" regulatory complement(2105207..2105212) /regulatory_class="ribosome_binding_site" /gene="cbiK" /locus_tag="STM2025" /note="putative RBS for cbiK; RegulonDB:STMS1H002176" gene complement(2105208..2106005) /gene="cbiJ" /locus_tag="STM2026" /db_xref="GeneID:1253547" CDS complement(2105208..2105999) /gene="cbiJ" /locus_tag="STM2026" /EC_number="1.3.1.54" /note="precorrin-6x reductase. (SW:CBIJ_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460971.1" /db_xref="GeneID:1253547" /translation="MNEGDVLVVGGTSDARALCRQLDAANVAYTLSVATPAGKALAGD IKGQVRCGRLEYGQMVAWLKENRTRWVIDASHPYAEMVSHNLLRACETAGVLLSRYQR PEQLSNLTHPLLYTARSIADACEIARRFGPRVLLTTGSKDLAVWRAGLAEKTLLARVL PVAEVIQRCSELGFGVGEIFALCGPFSADFNAAFYHQCRADVVITKASGAEGGYQEKV QPCLDAGIPCIVIARPTPLVTGDELLESQAAFAQRLSRWLAAAKE" misc_feature complement(2105298..2105990) /gene="cbiJ" /locus_tag="STM2026" /note="Precorrin-6x reductase [Coenzyme transport and metabolism]; Region: CobK; COG2099" /db_xref="CDD:441702" gene complement(2105996..2106728) /gene="cbiH" /locus_tag="STM2027" /db_xref="GeneID:1253548" CDS complement(2105996..2106721) /gene="cbiH" /locus_tag="STM2027" /EC_number="2.1.1.131" /note="precorrin-3B C17-methyltransferase. (SW:CBIH_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460972.1" /db_xref="GeneID:1253548" /translation="MLSVIGIGPGSQAMMTMEAIEALQAAEIVVGYKTYTHLVKAFTG DKQVIKTGMCREIERCQAAIELAQAGHNVALISSGDAGIYGMAGLVLELVSKQKLDVE VRLIPGMTASIAAASLLGAPLMHDFCHISLSDLLTPWPVIEKRIVAAGEADFVICFYN PRSRGREGHLARAFDLLAASKSAQTPVGVVKSAGRKKEEKWLTTLGDMDFEPVDMTSL VIVGNKTTYVQDGLMITPRGYTL" misc_feature complement(2105999..2106721) /gene="cbiH" /locus_tag="STM2027" /note="precorrin-3B C(17)-methyltransferase; Region: cbiH; PRK15478" /db_xref="CDD:185375" misc_feature complement(order(2106068..2106076,2106143..2106154, 2106245..2106250,2106329..2106331,2106377..2106379, 2106389..2106394,2106467..2106475,2106482..2106490, 2106545..2106547,2106695..2106697)) /gene="cbiH" /locus_tag="STM2027" /note="putative active site [active]" /db_xref="CDD:381173" misc_feature complement(order(2106068..2106079,2106143..2106148, 2106152..2106154,2106239..2106247,2106377..2106379, 2106389..2106394,2106470..2106475,2106482..2106490, 2106695..2106697)) /gene="cbiH" /locus_tag="STM2027" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:381173" misc_feature complement(order(2106011..2106013,2106020..2106022, 2106026..2106028,2106038..2106043,2106053..2106055, 2106260..2106271,2106278..2106280,2106287..2106292, 2106329..2106349,2106353..2106355,2106359..2106364, 2106371..2106373,2106383..2106385,2106392..2106403, 2106407..2106409,2106413..2106415,2106446..2106451, 2106458..2106460,2106470..2106478,2106482..2106484, 2106668..2106679,2106689..2106691)) /gene="cbiH" /locus_tag="STM2027" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:381173" regulatory complement(2106000..2106005) /regulatory_class="ribosome_binding_site" /gene="cbiH" /locus_tag="STM2027" /note="putative RBS for cbiJ; RegulonDB:STMS1H002177" gene complement(2106721..2107781) /gene="cbiG" /locus_tag="STM2028" /db_xref="GeneID:1253549" CDS complement(2106721..2107776) /gene="cbiG" /locus_tag="STM2028" /note="CBIG protein. (SW:CBIG_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460973.1" /db_xref="GeneID:1253549" /translation="MNTVKPESIALFCLTPGGVALAKRLAAMLPLTCFTSEKLREEGF IPFDGGFANTARQAFTTYTALIFIGATGIAVRVLAPLVNDKFSDPAVVVIDERGQHVI SLLSGHAGGANALTRYLAGMLGADPVITTATDVNEMSALDTLAFQLNARMSDLRTAVK TVNQMLVSHQRVGLWWDAELTEEIGQCDIRGFIPVDDLQRLPELDALICVSLRNDLPE LPVPHWKLVPQRVVAGIGCRRDTPFPLLATLLARQLEAQKLDPLALKAIGSVTLKKGE PGLIQLASCCRVPFKTFTAEALREFEHHFPGSGFVRKTVGVGSVSGPAAWLLSQGQLL GETLREQGVTITLGVAH" misc_feature complement(2106724..2107767) /gene="cbiG" /locus_tag="STM2028" /note="cobalt-precorrin 5A hydrolase; Region: PRK05788" /db_xref="CDD:235610" regulatory complement(2106723..2106728) /regulatory_class="ribosome_binding_site" /gene="cbiH" /locus_tag="STM2027" /note="putative RBS for cbiH; RegulonDB:STMS1H002178" gene complement(2107757..2108537) /gene="cbiF" /locus_tag="STM2029" /db_xref="GeneID:1253550" CDS complement(2107757..2108530) /gene="cbiF" /locus_tag="STM2029" /EC_number="2.1.1.133" /note="precorrin-4 C11-methyltransferase. (SW:CBIF_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460974.1" /db_xref="GeneID:1253550" /translation="MSETFDPRCVWFVGAGPGDRELITLKGYRLLQQAQVVIYAGSLI NTELLDYCPAQAERYDSAELHLEQIIELMAAGVKAGKTVVRLQTGDVSLYGSVREQGE ELTRRGIDWQVVPGVSAFLGAAAELGVEYTVPEVSQSLIITRLEGRTPVPAREQLEAF ASHQTSMAIYLSVQRIHRVAERLIAGGYPATTPVAVIYKATWPESQTVRGTLADISDK VRDAGIRKTALILVGNFLGKEYHYSRLYAADFSHEYRKA" misc_feature complement(2107760..2108530) /gene="cbiF" /locus_tag="STM2029" /note="cobalt-precorrin-4 methyltransferase; Region: cbiF; PRK15473" /db_xref="CDD:185370" misc_feature complement(order(2107844..2107855,2107925..2107927, 2107931..2107936,2107940..2107942,2108018..2108026, 2108174..2108179,2108249..2108254,2108261..2108269, 2108402..2108404,2108480..2108482)) /gene="cbiF" /locus_tag="STM2029" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:381168" misc_feature complement(order(2107844..2107852,2107931..2107942, 2108021..2108026,2108099..2108101,2108162..2108164, 2108174..2108179,2108246..2108254,2108261..2108269, 2108324..2108326,2108480..2108482)) /gene="cbiF" /locus_tag="STM2029" /note="putative active site [active]" /db_xref="CDD:381168" misc_feature complement(order(2108042..2108047,2108051..2108056, 2108066..2108071,2108099..2108125,2108135..2108143, 2108147..2108149,2108156..2108161,2108168..2108173, 2108177..2108188,2108192..2108194,2108216..2108218, 2108225..2108230,2108234..2108263,2108333..2108335, 2108447..2108449,2108453..2108470,2108474..2108476)) /gene="cbiF" /locus_tag="STM2029" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:381168" regulatory complement(2107776..2107781) /regulatory_class="ribosome_binding_site" /gene="cbiF" /locus_tag="STM2029" /note="putative RBS for cbiG; RegulonDB:STMS1H002179" gene complement(2108514..2109098) /gene="cbiT" /locus_tag="STM2030" /db_xref="GeneID:1253551" CDS complement(2108514..2109092) /gene="cbiT" /locus_tag="STM2030" /EC_number="1.-.-.-" /note="precorrin-8W decarboxylase. (SW:CBIT_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460975.1" /db_xref="GeneID:1253551" /translation="MKDELFLRGENVPMTKEAVRALALSKLELHRASHLIDVGAGTGS VSIEAALQFPSLQVTAIERNPAALRLLDENRQRFACGNIDILPGEAPMTITGKADAVF MGGSGGHLTALIDWAMGHLHPGGRLVMTFILQENLHSALAHLAHIGACRMDCVQLQLS SLTPLGAGHYFKPNNPVFVIACQKEENHVRDI" misc_feature complement(2108532..2109092) /gene="cbiT" /locus_tag="STM2030" /note="decarboxylating cobalt-precorrin-6B (C(15))-methyltransferase; Region: PRK08287" /db_xref="CDD:181354" misc_feature complement(order(2108781..2108783,2108829..2108831, 2108904..2108909,2108961..2108981)) /gene="cbiT" /locus_tag="STM2030" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" regulatory complement(2108532..2108537) /regulatory_class="ribosome_binding_site" /gene="cbiT" /locus_tag="STM2030" /note="putative RBS for cbiF; RegulonDB:STMS1H002180" gene complement(2109082..2109694) /gene="cbiE" /locus_tag="STM2031" /db_xref="GeneID:1253552" CDS complement(2109082..2109687) /gene="cbiE" /locus_tag="STM2031" /EC_number="2.1.1.132" /note="precorrin-6Y C5,15-methyltransferase [decarboxylating]. (SW:CBIE_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460976.1" /db_xref="GeneID:1253552" /translation="MLTVVGMGPAGRHLMTPAALEAIDHADALAGGKRHLAQFPAFGG ERFTLGADIGALLSWIAARRDKGIVVLASGDPLFYGIGTRLVAHFGIEQVRIIPGISA VQYLCAQAGIDMNDMWLTSSHGRCVSFEQLANHRKVAMVTDARCGPREIARELVARGK GHRLMVIGENLAMENERIHWLPVSAVNADYEMNAVVILDER" misc_feature complement(2109085..2109687) /gene="cbiE" /locus_tag="STM2031" /note="cobalt-precorrin-7 (C(5))-methyltransferase; Region: PRK05787" /db_xref="CDD:235609" misc_feature complement(order(2109106..2109117,2109175..2109186, 2109265..2109270,2109325..2109327,2109370..2109372, 2109382..2109387,2109448..2109456,2109463..2109471, 2109532..2109534,2109661..2109663)) /gene="cbiE" /locus_tag="STM2031" /note="putative active site [active]" /db_xref="CDD:381171" misc_feature complement(order(2109325..2109339,2109364..2109369, 2109373..2109408,2109427..2109432,2109436..2109441, 2109448..2109465,2109625..2109630,2109634..2109645, 2109661..2109663)) /gene="cbiE" /locus_tag="STM2031" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:381171" misc_feature complement(order(2109106..2109117,2109175..2109180, 2109184..2109186,2109262..2109267,2109382..2109387, 2109451..2109456,2109463..2109471,2109586..2109588)) /gene="cbiE" /locus_tag="STM2031" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:381171" regulatory complement(2109093..2109098) /regulatory_class="ribosome_binding_site" /gene="cbiT" /locus_tag="STM2030" /note="putative RBS for cbiT; RegulonDB:STMS1H002181" gene complement(2109681..2110825) /gene="cbiD" /locus_tag="STM2032" /db_xref="GeneID:1253553" CDS complement(2109681..2110820) /gene="cbiD" /locus_tag="STM2032" /note="CBID protein. (SW:CBID_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460977.1" /db_xref="GeneID:1253553" /translation="MSELSFDAPVWHHGKALRKGYTTGSCATAAAKVAALMVLRQHLI HQVSIVTPSGVTLCLNVESPHIEGQQAIAAIRKDGGDDVDATHGMLIFARVTLNDSGE ITLTGGEGIGTVTRKGIGLPLGSAAINRTPRHTIESAVREAIGPARGADVEIFAPEGE ARAQKTYNSRLGILGGISIIGTTGIVTPMSEESWKRSLSLELEIKRASGLTRVILVPG NHGERFVREQMGVDTQAVVTMSNFVGYMIEEAVRLGFCQIVLVGHPGKLIKIAAGIFH THSHIADARMETLVAHLALLGAPLELLTLVSDCDTTEAAMEHIEAYGFGHIYNHLARR ICLRVMQMLRFTKTPPVCDAILFSFDNHILGSNRPVDEIAKELQC" misc_feature complement(2109705..2110802) /gene="cbiD" /locus_tag="STM2032" /note="Cobalamin biosynthesis protein CbiD (cobalt-precorrin-5B C-methyltransferase) [Coenzyme transport and metabolism]; Region: CbiD; COG1903" /db_xref="CDD:441507" regulatory complement(2109689..2109694) /regulatory_class="ribosome_binding_site" /gene="cbiE" /locus_tag="STM2031" /note="putative RBS for cbiE; RegulonDB:STMS1H002182" gene complement(2110820..2111459) /gene="cbiC" /locus_tag="STM2033" /db_xref="GeneID:1253554" CDS complement(2110820..2111452) /gene="cbiC" /locus_tag="STM2033" /EC_number="5.4.99.61" /note="precorrin-8x methylmutase. (SW:CBIC_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460978.1" /db_xref="GeneID:1253554" /translation="MHYIQQPQTIEANSFTIISDIIRETRPDYRFASPLHEAIIKRVI HTTADFDWLDILWFSADALEQLCDALRHPCIIYTDTTMALSGINKRLLATFGGECRCY ISDPRVVRAAQTQGITRSMAAVDIAIAEEEKNKLFVFGNAPTALFRLLEHNVTVSGVV GVPVGFVGAAESKEALTHSHFPAVAALGRKGGSNVAAAIVNALLYHLREA" misc_feature complement(2110823..2111452) /gene="cbiC" /locus_tag="STM2033" /note="cobalt-precorrin-8 methylmutase; Region: cbiC; PRK08286" /db_xref="CDD:181353" regulatory complement(2110820..2110825) /regulatory_class="ribosome_binding_site" /gene="cbiC" /locus_tag="STM2033" /note="putative RBS for cbiD; RegulonDB:STMS1H002183" regulatory complement(2111454..2111459) /regulatory_class="ribosome_binding_site" /gene="cbiC" /locus_tag="STM2033" /note="putative RBS for cbiC; RegulonDB:STMS1H002184" gene complement(2111463..2112428) /gene="cibB" /locus_tag="STM2034" /db_xref="GeneID:1253555" CDS complement(2111463..2112422) /gene="cibB" /locus_tag="STM2034" /note="CBIB protein. (SW:CBIB_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460979.1" /db_xref="GeneID:1253555" /translation="MTILAWCIAWVLDFIIGDPQHWPHPVRWIGRLITFVQRIVRRYC PGDKALRIGGGVMWVVVVGATWGVAWGVLALAQRIHPWFGWSVEVWMIFTTLAGRSLA HAAQEVERPLRKNDLAESRIKLSWIVGRDTSQLQPAQINRAVVETVAENTVDGIIAPL FFLFLGGAPLAMAYKAVNTLDSMVGYKHEKYRAIGMVSARMDDVANYLPARLSWLLLG IAAGLCRLSGWRALRIGWRDRYNHSSPNCAWSEACVAGALGIQLGGPNNYFGERVDKP WIGDAQRDISVDDISRTIRLMWVASTLALALLIAARCGLSGVA" misc_feature complement(2111520..2112422) /gene="cibB" /locus_tag="STM2034" /note="cobalamin biosynthesis protein; Region: cobD; PRK01209" /db_xref="CDD:234919" gene complement(2112419..2113805) /gene="cbiA" /locus_tag="STM2035" /db_xref="GeneID:1253556" CDS complement(2112419..2113798) /gene="cbiA" /locus_tag="STM2035" /note="cobyrinic acid A,C-diamide synthase. (SW:CBIA_SALTY)" /codon_start=1 /transl_table=11 /product="synthesis of vitamin B12 adenosyl cobalamide precursor" /protein_id="NP_460980.1" /db_xref="GeneID:1253556" /translation="MAARHHAFILAGTGSGCGKTTVTLGLLRLLQKRALRVQPFKVGP DYLDTGWHTAICGVASRNLDSFMLPPPVLNALFCEQMRQADIAVIEGVMGLYDGYGVD PNYCSTAAMAKQLGCPVILLVDGKAVSTSLAATVMGFQHFDPTLNLAGVIVNRVTSDA HYQLLKNAIEHYCSLPVLGYVPPCDGVALPERHLGLITARESLVNQQSWHDFAATLEQ TVDVDALLSLSVLSALPAGMWPERPDNTAGAGLTLALADDEAFNFYYPDNIDLLERAG VNIVRFSPLHDRALPDCQMIWLGGGYPELYAADLAANTVMLKHLRAAHQRGVAIYAEC GGLMYLGSTLEDSGGEIHQMANIIPGHSKMGKRLTRFGYCEAQAMQPTLLAAPGEIVR GHEFHYSDFIPETPAVMACRKVRDGRVLQEWTGGWQTGNTFASYLHVHFAQRPEMLQH WLAAARRVL" misc_feature complement(2112425..2113780) /gene="cbiA" /locus_tag="STM2035" /note="cobyrinate a,c-diamide synthase; Region: PRK01077" /db_xref="CDD:234896" regulatory complement(2112423..2112428) /regulatory_class="ribosome_binding_site" /gene="cibB" /locus_tag="STM2034" /note="putative RBS for cibB; RegulonDB:STMS1H002185" regulatory complement(2113800..2113805) /regulatory_class="ribosome_binding_site" /gene="cbiA" /locus_tag="STM2035" /note="putative RBS for cbiA; RegulonDB:STMS1H002186" gene complement(2114396..2115320) /gene="pocR" /locus_tag="STM2036" /db_xref="GeneID:1253557" CDS complement(2114396..2115307) /gene="pocR" /locus_tag="STM2036" /note="AraC family transcriptional regulation; regulatory protein POCR. (SW:POCR_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460981.1" /db_xref="GeneID:1253557" /translation="MISASALNSELINKIAQDFAQATGLAVVVVNIHGDEISELFNFT PFCQLMRQHPQHSTRCRMSDRCGGLEASKSDQPCIYRCHAGLTDFSIPLVIAGHLVGF VLCGQVRLSNDVELVNILNVDDRWQADPELLNEFRNVPEMDYSRVIASADLLKLIVEN CLKKQLNFVVIKDNPQQSEANKTTRGPTPHDSKMKKALRYIDAHLSDDLRLEDVASHV YLSPYYFSKLFKKYQGIGFNAWVNRQRMVSARELLCHSDWSIASIARNLGFSQTSYFC KVFRQTYQVTPQAYRQQINENSHPPSL" misc_feature complement(<2114417..2115289) /gene="pocR" /locus_tag="STM2036" /note="Ligand-binding sensor domain [Signal transduction mechanisms]; Region: PocR; COG4936" /db_xref="CDD:443963" regulatory complement(2115315..2115320) /regulatory_class="ribosome_binding_site" /gene="pocR" /locus_tag="STM2036" /note="putative RBS for pocR; RegulonDB:STMS1H002187" gene complement(2115524..2116324) /gene="pduF" /locus_tag="STM2037" /db_xref="GeneID:1253558" CDS complement(2115524..2116318) /gene="pduF" /locus_tag="STM2037" /note="propanediol diffusion facilitator; propanediol diffusion facilitator. (SW:PDUF_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460982.1" /db_xref="GeneID:1253558" /translation="MNDSLKAQCGAEFLGTGLFLFFGIGCLSALKVAGASLGLWEICI IWGLGISLAVYLTAGISGGHLNPAVTIALWLFACFPKQKVLPYIIAQFAGAFGGALLA YVLYSSLFTEFETAHHMVRGSVESLQLASIFSTYPAAALNVWQAALVEVVITSILMGM IMALTDDGNGIPKGPLAPLLIGILVAVIGASTGPLTGFAMNPARDFGPKLFTWLAGWG NMAMSGGREIPYFIVPIVAPVIGACAGAAIYRYFIGKNLPCNRCEL" misc_feature complement(2115563..2116297) /gene="pduF" /locus_tag="STM2037" /note="Major intrinsic protein (MIP) superfamily. Members of the MIP superfamily function as membrane channels that selectively transport water, small neutral molecules, and ions out of and between cells. The channel proteins share a common fold: the N-terminal...; Region: MIP; cd00333" /db_xref="CDD:238204" misc_feature complement(order(2115707..2115709,2115716..2115718, 2115725..2115730,2116121..2116129,2116181..2116183)) /gene="pduF" /locus_tag="STM2037" /note="amphipathic channel [active]" /db_xref="CDD:238204" misc_feature complement(order(2115710..2115718,2116115..2116123)) /gene="pduF" /locus_tag="STM2037" /note="Asn-Pro-Ala signature motifs; other site" /db_xref="CDD:238204" regulatory complement(2116319..2116324) /regulatory_class="ribosome_binding_site" /gene="pduF" /locus_tag="STM2037" /note="putative RBS for pduF; RegulonDB:STMS1H002188" gene 2116837..2117127 /gene="pduA" /locus_tag="STM2038" /db_xref="GeneID:1253559" regulatory 2116837..2116842 /regulatory_class="ribosome_binding_site" /gene="pduA" /locus_tag="STM2038" /note="putative RBS for pduA; RegulonDB:STMS1H002189" CDS 2116843..2117127 /gene="pduA" /locus_tag="STM2038" /note="polyhedral bodies; propanediol utilization protein PDUA. (SW:PDUA_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460983.1" /db_xref="GeneID:1253559" /translation="MQQEALGMVETKGLTAAIEAADAMVKSANVMLVGYEKIGSGLVT VIVRGDVGAVKAATDAGAAAARNVGEVKAVHVIPRPHTDVEKILPKGISQ" misc_feature 2116849..2117103 /gene="pduA" /locus_tag="STM2038" /note="Carboxysome shell and ethanolamine utilization microcompartment protein CcmL/EutN [Secondary metabolites biosynthesis, transport and catabolism, Energy production and conversion]; Region: CcmK; COG4577" /db_xref="CDD:443634" gene 2117232..2117936 /gene="pudB" /locus_tag="STM2039" /db_xref="GeneID:1253560" regulatory 2117232..2117237 /regulatory_class="ribosome_binding_site" /gene="pudB" /locus_tag="STM2039" /note="putative RBS for pudB; RegulonDB:STMS1H002190" CDS 2117235..2117936 /gene="pudB" /locus_tag="STM2039" /note="polyhedral bodies; propanediol utilization protein PDUB. (SW:PDUB_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460984.3" /db_xref="GeneID:1253560" /translation="MAEKSCSLTEFVGTAIGDTLGLVIANVDTALLDAMKLEKRYRSI GILGARTGAGPHIMAADEAVKATNTEVVSIELPRDTKGGAGHGSLIILGGNDVSDVKR GIEVALKELDRTFGDVYGNEAGHIELQYTARASYALEKAFGAPIGRACGIIVGAPASV GVLMADTALKSANVEVVAYSSPAHGTSFSNEAILVISGDSGAVRQAVTSAREIGKTVL ATLGSEPKNDRPSYI" misc_feature 2117235..2117933 /gene="pudB" /locus_tag="STM2039" /note="propanediol utilization microcompartment protein PduB; Region: PRK15415" /db_xref="CDD:185313" gene 2117950..2119619 /gene="pduC" /locus_tag="STM2040" /db_xref="GeneID:1253561" regulatory 2117950..2117955 /regulatory_class="ribosome_binding_site" /gene="pduC" /locus_tag="STM2040" /note="putative RBS for pduC; RegulonDB:STMS1H002191" CDS 2117955..2119619 /gene="pduC" /locus_tag="STM2040" /EC_number="4.2.1.30" /note="glycerol dehydratase large subunit. (SW:DHAB_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol utilization dehydratase, large subunit" /protein_id="NP_460985.1" /db_xref="GeneID:1253561" /translation="MRSKRFEALAKRPVNQDGFVKEWIEEGFIAMESPNDPKPSIKIV NGAVTELDGKPVSEFDLIDHFIARYGINLNRAEEVMAMDSVKLANMLCDPNVKRSEIV PLTTAMTPAKIVEVVSHMNVVEMMMAMQKMRARRTPSQQAHVTNVKDNPVQIAADAAE GAWRGFDEQETTVAVARYAPFNAIALLVGSQVGRPGVLTQCSLEEATELKLGMLGHTC YAETISVYGTEPVFTDGDDTPWSKGFLASSYASRGLKMRFTSGSGSEVQMGYAEGKSM LYLEARCIYITKAAGVQGLQNGSVSCIGVPSAVPSGIRAVLAENLICSSLDLECASSN DQTFTHSDMRRTARLLMQFLPGTDFISSGYSAVPNYDNMFAGSNEDAEDFDDYNVIQR DLKVDGGLRPVREEDVIAIRNKAARALQAVFAGMGLPPITDEEVEAATYAHGSKDMPE RNIVEDIKFAQEIINKNRNGLEVVKALAQGGFTDVAQDMLNIQKAKLTGDYLHTSAII VGDGQVLSAVNDVNDYAGPATGYRLQGERWEEIKNIPGALDPNEID" misc_feature 2117955..2119616 /gene="pduC" /locus_tag="STM2040" /note="propanediol/glycerol family dehydratase large subunit; Region: pduC; PRK15444" /db_xref="CDD:185341" misc_feature order(2117979..2117981,2117988..2117990,2117997..2117999, 2118009..2118017,2118021..2118023,2118219..2118221, 2118231..2118233,2118237..2118239,2118309..2118311, 2118315..2118317,2118324..2118326,2118342..2118344, 2118423..2118425,2118432..2118434,2118876..2118878, 2118882..2118887,2118891..2118896,2118975..2118977, 2118981..2118986,2118990..2118992,2119050..2119052, 2119095..2119103,2119107..2119112,2119119..2119121, 2119128..2119133,2119167..2119169,2119275..2119277, 2119281..2119283,2119293..2119295,2119524..2119526, 2119530..2119535,2119548..2119550,2119596..2119598, 2119602..2119604) /gene="pduC" /locus_tag="STM2040" /note="alpha-alpha subunit/dimer interface [polypeptide binding]; other site" /db_xref="CDD:239658" misc_feature order(2118006..2118008,2118030..2118032,2118393..2118395, 2118483..2118485,2118654..2118659,2118753..2118755, 2118762..2118764,2118855..2118857,2118864..2118866, 2118960..2118965,2118972..2118974,2119062..2119064, 2119068..2119070,2119074..2119082) /gene="pduC" /locus_tag="STM2040" /note="alpha-beta subunit interface [polypeptide binding]; other site" /db_xref="CDD:239658" misc_feature order(2118135..2118137,2118159..2118161,2118564..2118569, 2118639..2118641,2118651..2118653,2118660..2118668, 2118672..2118677,2118681..2118683,2118693..2118695, 2118705..2118710,2118816..2118827,2118933..2118935, 2119365..2119367,2119401..2119403,2119431..2119436, 2119443..2119454,2119461..2119466,2119491..2119496, 2119500..2119502) /gene="pduC" /locus_tag="STM2040" /note="alpha-gamma subunit interface [polypeptide binding]; other site" /db_xref="CDD:239658" misc_feature order(2118375..2118377,2118381..2118383,2118462..2118464, 2118468..2118470,2118558..2118560,2118567..2118569, 2118615..2118620,2118654..2118656,2118753..2118758, 2118840..2118842,2118957..2118962,2119038..2119040, 2119071..2119076) /gene="pduC" /locus_tag="STM2040" /note="active site" /db_xref="CDD:239658" misc_feature order(2118375..2118377,2118381..2118383,2118462..2118464, 2118615..2118620,2118840..2118842,2118957..2118962, 2119038..2119040) /gene="pduC" /locus_tag="STM2040" /note="substrate and K+ binding site [active]" /db_xref="CDD:239658" misc_feature order(2118375..2118377,2118462..2118464,2118615..2118617, 2118840..2118842) /gene="pduC" /locus_tag="STM2040" /note="K+ binding site [ion binding]; other site" /db_xref="CDD:239658" misc_feature order(2118468..2118470,2118558..2118560,2118567..2118569, 2118618..2118620,2118654..2118656,2118753..2118758, 2118960..2118962,2119071..2119076) /gene="pduC" /locus_tag="STM2040" /note="cobalamin binding site [chemical binding]; other site" /db_xref="CDD:239658" gene 2119624..2120304 /gene="pduD" /locus_tag="STM2041" /db_xref="GeneID:1253562" regulatory 2119624..2119629 /regulatory_class="ribosome_binding_site" /gene="pduD" /locus_tag="STM2041" /note="putative RBS for pduD; RegulonDB:STMS1H002192" CDS 2119630..2120304 /gene="pduD" /locus_tag="STM2041" /EC_number="4.2.1.30" /codon_start=1 /transl_table=11 /product="propanediol utilization dehydratase, medium subunit" /protein_id="NP_460986.1" /db_xref="GeneID:1253562" /translation="MEINEKLLRQIIEDVLRDMKGSDKPVSFNAPAASTAPQTAAPAG DGFLTEVGEARQGTQQDEVIIAVGPAFGLAQTVNIVGLPHKSILREVIAGIEEEGIKA RVIRCFKSSDVAFVAVEGNRLSGSGISIGIQSKGTTVIHQQGLPPLSNLELFPQAPLL TLETYRQIGKNAARYAKRESPQPVPTLNDQMARPKYQAKSAILHIKETKYVVTGKNPQ ELRVAL" misc_feature 2119630..2120301 /gene="pduD" /locus_tag="STM2041" /note="propanediol/glycerol family dehydratase medium subunit; Region: pduD; PRK15042" /db_xref="CDD:237886" gene 2120313..2120840 /gene="pduE" /locus_tag="STM2042" /db_xref="GeneID:1253563" regulatory 2120313..2120318 /regulatory_class="ribosome_binding_site" /gene="pduE" /locus_tag="STM2042" /note="putative RBS for pduE; RegulonDB:STMS1H002193" CDS 2120319..2120840 /gene="pduE" /locus_tag="STM2042" /EC_number="4.2.1.30" /codon_start=1 /transl_table=11 /product="propanediol utilization dehydratase, small subunit" /protein_id="NP_460987.1" /db_xref="GeneID:1253563" /translation="MNTDAIESMVRDVLSRMNSLQGDAPAAAPAAGGTSRSAKVSDYP LANKHPEWVKTATNKTLDDFTLENVLSNKVTAQDMRITPETLRLQASIAKDAGRDRLA MNFERAAELTAVPDDRILEIYNALRPYRSTKEELLAIADDLENRYQAKICAAFVREAA GLYVERKKLKGDD" misc_feature 2120319..2120831 /gene="pduE" /locus_tag="STM2042" /note="Propanediol dehydratase, small subunit [Secondary metabolites biosynthesis, transport and catabolism]; Region: PduE; COG4910" /db_xref="CDD:443938" gene 2120844..2122682 /gene="pduG" /locus_tag="STM2043" /db_xref="GeneID:1253564" regulatory 2120844..2120849 /regulatory_class="ribosome_binding_site" /gene="pduG" /locus_tag="STM2043" /note="putative RBS for pduG; RegulonDB:STMS1H002194" CDS 2120850..2122682 /gene="pduG" /locus_tag="STM2043" /codon_start=1 /transl_table=11 /product="propanediol utilization diol dehydratase reactivation protein" /protein_id="NP_460988.1" /db_xref="GeneID:1253564" /translation="MRYIAGIDIGNSSTEVALARQDETGALTITHSALAETTGIKGTL RNVFGIQEALALVAKRAGINVRDISLIRINEATPVIGDVAMETITETIITESTMIGHN PKTPGGAGLGVGITITPEELLTRPADSSYILVVSSAFDFADIANVINASMRAGYQITG VILQRDDGVLVSNRLEKSLPIVDEVLYIDRIPLGMLAAIEVAVPGKVIETLSNPYGIA TVFNLNADETKNIVPMARALIGNRSAVVVKTPSGDVKARAIPAGNLELQAQGRTVRVD VAAGAEAIMKAVDGCGKLDNVTGEAGTNIGGMLEHVRQTMAELTNKPSSEIFIQDLLA VDTSVPVSVTGGLAGEFSLEQAVGIASMVKSDRLQMAMIAREIEQKLNIDVQIGGAEA EAAILGALTTPGTTRPLAILDLGAGSTDASIINPKGEIIATHLAGAGDMVTMIIAREL GLEDRYLAEEIKKYPLAKVESLFHLRHEDGSVQFFPTPLPPAVFARVCVVKPDELVPL PGDLALEKVRAIRRSAKERVFVTNALRALRQVSPTGNIRDIPFVVLVGGSSLDFEVPQ LVTDALAHYRLVAGRGNIRGSEGPRNAVATGLILSWHKEFAHGQ" misc_feature 2120856..2122652 /gene="pduG" /locus_tag="STM2043" /note="diol dehydratase reactivase alpha subunit; Region: reactive_PduG; TIGR04491" /db_xref="CDD:275284" gene 2122665..2123022 /gene="pduH" /locus_tag="STM2044" /db_xref="GeneID:1253565" regulatory 2122665..2122670 /regulatory_class="ribosome_binding_site" /gene="pduH" /locus_tag="STM2044" /note="putative RBS for pduH; RegulonDB:STMS1H002195" CDS 2122672..2123022 /gene="pduH" /locus_tag="STM2044" /codon_start=1 /transl_table=11 /product="propanediol utilization diol dehydratase reactivation protein" /protein_id="NP_460989.1" /db_xref="GeneID:1253565" /translation="MDSNHSAPAIVITVINDCASLWHEVLLGIEEEGIPFLLQHHPAG DIVDSAWQAARSSPLLVGIACDRHSLVVHYKNLPASAPLFTLMHHQDSQAQRNTGNNA ARLVKGIPFRDLHA" misc_feature 2122693..2123004 /gene="pduH" /locus_tag="STM2044" /note="Dehydratase medium subunit; Region: Dehydratase_MU; pfam02288" /db_xref="CDD:426702" gene 2123033..2123316 /gene="pduJ" /locus_tag="STM2045" /db_xref="GeneID:1253566" regulatory 2123033..2123038 /regulatory_class="ribosome_binding_site" /gene="pduJ" /locus_tag="STM2045" /note="putative RBS for pduJ; RegulonDB:STMS1H002196" CDS 2123041..2123316 /gene="pduJ" /locus_tag="STM2045" /note="polyhedral bodies; similar to E. coli detox protein (AAC75510.1); Blastp hit to AAC75510.1 (111 aa), 64% identity in aa 17 - 101" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460990.1" /db_xref="GeneID:1253566" /translation="MNNALGLVETKGLVGAIEAADAMVKSANVQLVGYEKIGSGLVTV MVRGDVGAVKAAVDAGSAAASVVGEVKSCHVIPRPHSDVEAILPKSA" misc_feature 2123041..2123298 /gene="pduJ" /locus_tag="STM2045" /note="Carboxysome shell and ethanolamine utilization microcompartment protein CcmL/EutN [Secondary metabolites biosynthesis, transport and catabolism, Energy production and conversion]; Region: CcmK; COG4577" /db_xref="CDD:443634" gene 2123320..2123802 /gene="pduK" /locus_tag="STM2046" /db_xref="GeneID:1253567" CDS 2123320..2123802 /gene="pduK" /locus_tag="STM2046" /note="polyhedral bodies; similar to E. coli detox protein (AAC75510.1); Blastp hit to AAC75510.1 (111 aa), 35% identity in aa 9 - 92" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460991.3" /db_xref="GeneID:1253567" /translation="MANKEHRVKQSLGLLEVCGLALAISCADIMAKSASITLLALEKT NGSGWMVIKITGDVASVQAAITTGAHFAEQWNGLVAHKVIARPGEGILLAETPSPSVI EPEPEASEIADVVSEAPAEEAPQESELVSCNLCLDPKCPRQKGEPRTLCIHSGKRGEA " misc_feature 2123350..2123580 /gene="pduK" /locus_tag="STM2046" /note="1,2-propanediol utilization protein K (PduK), Bacterial Micro-Compartment (BMC) domain repeat 1l; Region: BMC_PduK; cd07056" /db_xref="CDD:132896" misc_feature order(2123365..2123367,2123374..2123376,2123401..2123403, 2123410..2123415,2123431..2123433,2123446..2123448, 2123464..2123466) /gene="pduK" /locus_tag="STM2046" /note="putative hexamer interface [polypeptide binding]; other site" /db_xref="CDD:132896" misc_feature 2123446..2123448 /gene="pduK" /locus_tag="STM2046" /note="putative hexagonal pore [active]" /db_xref="CDD:132896" gene 2123795..2124434 /gene="pduL" /locus_tag="STM2047" /db_xref="GeneID:1253568" regulatory 2123795..2123800 /regulatory_class="ribosome_binding_site" /gene="pduK" /locus_tag="STM2046" /note="putative RBS for pduL; RegulonDB:STMS1H002197" CDS 2123802..2124434 /gene="pduL" /locus_tag="STM2047" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460992.1" /db_xref="GeneID:1253568" /translation="MDKELLQSTVRKVLDEMRQRPIPLGVSNRHIHLSAQDYERLFPG HPISEKKALLQPGQYAAEQTVTLVGPKGQLKNVRLLGPLRSVSQVEISRTDARTLGIA APLRMSGNLKGTPGIRLVSPFAELELPSGVIVAQRHIHMSPLDALILRVSHGDMVSVA IEGDDRGLIFNNVAIRVSPDMRLEMHIDTDEANAAGADNPHAFARLVGPR" misc_feature 2123802..2124428 /gene="pduL" /locus_tag="STM2047" /note="phosphate propanoyltransferase; Region: PRK15070" /db_xref="CDD:237899" gene 2124426..2124922 /gene="pduM" /locus_tag="STM2048" /db_xref="GeneID:1253569" regulatory 2124426..2124431 /regulatory_class="ribosome_binding_site" /gene="pduM" /locus_tag="STM2048" /note="putative RBS for pduM; RegulonDB:STMS1H002198" CDS 2124431..2124922 /gene="pduM" /locus_tag="STM2048" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460993.1" /db_xref="GeneID:1253569" /translation="MNGETLQRIVEEIVSRLHRRAQSTATLSVTQLRDADCPALFCQH ASLRILLIDLPLLGQLADAETGDAAARKIHDALAFGIRVQLSLHSQLLPVIPVKKLAR LPLVFTDEHGLPLVLHAGSVLSYRDVALLSRGRVVVHRKCIVTAMARDAANARNIQLI KQE" misc_feature 2124431..2124919 /gene="pduM" /locus_tag="STM2048" /note="putative propanediol utilization protein PduM; Provisional; Region: PRK15428" /db_xref="CDD:185326" gene 2124918..2125201 /gene="pduN" /locus_tag="STM2049" /db_xref="GeneID:1253570" regulatory 2124918..2124923 /regulatory_class="ribosome_binding_site" /gene="pduN" /locus_tag="STM2049" /note="putative RBS for pduN; RegulonDB:STMS1H002199" CDS 2124926..2125201 /gene="pduN" /locus_tag="STM2049" /note="polyhedral bodies; similar to E. coli detox protein (AAC75509.1); Blastp hit to AAC75509.1 (95 aa), 43% identity in aa 1 - 83" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460994.1" /db_xref="GeneID:1253570" /translation="MHLARVTGAVVSTQKSPSLIGKKLLLVRRVSADGELPASPTSGD EVAVDSVGAGVGELVLLSGGSSARHVFSGPNEAIDLAVVGIVDTLSC" misc_feature 2124926..2125186 /gene="pduN" /locus_tag="STM2049" /note="Ethanolamine utilization protein EutN/carboxysome; Region: EutN_CcmL; pfam03319" /db_xref="CDD:427242" misc_feature order(2124926..2124928,2124932..2124934,2124944..2124952, 2124956..2124967,2125061..2125063,2125076..2125078, 2125109..2125111,2125127..2125129,2125157..2125165, 2125172..2125174,2125178..2125180,2125184..2125186) /gene="pduN" /locus_tag="STM2049" /note="Hexamer/Pentamer interface [polypeptide binding]; other site" /db_xref="CDD:133473" misc_feature order(2124929..2124931,2125007..2125009,2125016..2125018, 2125043..2125045,2125127..2125129,2125145..2125147, 2125160..2125162) /gene="pduN" /locus_tag="STM2049" /note="central pore [active]" /db_xref="CDD:133473" gene 2125205..2126221 /gene="pduO" /locus_tag="STM2050" /db_xref="GeneID:1253571" regulatory 2125205..2125210 /regulatory_class="ribosome_binding_site" /gene="pduO" /locus_tag="STM2050" /note="putative RBS for pduO; RegulonDB:STMS1H002200" CDS 2125211..2126221 /gene="pduO" /locus_tag="STM2050" /codon_start=1 /transl_table=11 /product="propanediol utilization B12 related protein" /protein_id="NP_460995.1" /db_xref="GeneID:1253571" /translation="MAIYTRTGDAGTTSLFTGQRVSKTHPRVEAYGTLDELNAALSLC ACAAADENHRTLLEAIQQQLFWFSAELASDSEQPSPKQRYISSEEISALEAAIDRAMA RVEPLHSFILPGRCEAASRLHFARTLARRAERRLVELATEVNVRQVLMRYINRLSDCL YALARAEDSDAHQANIIREVSKRYLAACQPPHSKETTPVALSFHDLHQLTRAAVERAQ QLQVPVVVSIVDAHGTETVTWRMPDALLVSSELAPKKAWTAVAMKTATHELSDVVQPG AALYGLESHLQGKVVTFGGGYALWRDGILIGGLGISGGSVEQDMDIAQTAIAAINVGT HQ" misc_feature 2125211..2125741 /gene="pduO" /locus_tag="STM2050" /note="Cob(II)alamin adenosyltransferase [Coenzyme transport and metabolism]; Region: PduO; COG2096" /db_xref="CDD:441699" misc_feature 2125811..2126203 /gene="pduO" /locus_tag="STM2050" /note="Heme-binding protein HbpS, GlcG/HbpS family [Signal transduction mechanisms]; Region: GlcG; COG3193" /db_xref="CDD:442426" gene 2126213..2127612 /gene="pduP" /locus_tag="STM2051" /db_xref="GeneID:1253572" regulatory 2126213..2126218 /regulatory_class="ribosome_binding_site" /gene="pduO" /locus_tag="STM2050" /note="putative RBS for pduP; RegulonDB:STMS1H002201" CDS 2126218..2127612 /gene="pduP" /locus_tag="STM2051" /note="similar to E. coli ethanolamine utilization; similar to acetaldehyde dehydrogenase (AAC75508.1); Blastp hit to AAC75508.1 (467 aa), 45% identity in aa 1 - 466" /codon_start=1 /transl_table=11 /product="propanediol utilization CoA-dependent propionaldehyde dehydrogenase" /protein_id="NP_460996.1" /db_xref="GeneID:1253572" /translation="MNTSELETLIRTILSEQLTTPAQTPVQPQGKGIFQSVSEAIDAA HQAFLRYQQCPLKTRSAIISAMRQELTPLLAPLAEESANETGMGNKEDKFLKNKAALD NTPGVEDLTTTALTGDGGMVLFEYSPFGVIGSVAPSTNPTETIINNSISMLAAGNSIY FSPHPGAKKVSLKLISLIEEIAFRCCGIRNLVVTVAEPTFEATQQMMAHPRIAVLAIT GGPGIVAMGMKSGKKVIGAGAGNPPCIVDETADLVKAAEDIINGASFDYNLPCIAEKS LIVVESVAERLVQQMQTFGALLLSPADTDKLRAVCLPEGQANKKLVGKSPSAMLEAAG IAVPAKAPRLLIALVNADDPWVTSEQLMPMLPVVKVSDFDSALALALKVEEGLHHTAI MHSQNVSRLNLAARTLQTSIFVKNGPSYAGIGVGGEGFTTFTIATPTGEGTTSARTFA RSRRCVLTNGFSIR" misc_feature 2126218..2127609 /gene="pduP" /locus_tag="STM2051" /note="aldehyde dehydrogenase; Region: PRK15398" /db_xref="CDD:237956" misc_feature 2127028..2127030 /gene="pduP" /locus_tag="STM2051" /note="putative catalytic cysteine [active]" /db_xref="CDD:143439" gene 2127618..2128736 /gene="pduQ" /locus_tag="STM2052" /db_xref="GeneID:1253573" regulatory 2127618..2127623 /regulatory_class="ribosome_binding_site" /gene="pduQ" /locus_tag="STM2052" /note="putative RBS for pduQ; RegulonDB:STMS1H002202" CDS 2127624..2128736 /gene="pduQ" /locus_tag="STM2052" /note="similar to E. coli CoA-linked acetaldehyde dehydrogenase and iron-dependent alcohol dehydrogenase; pyruvate-formate-lyase deactivase (AAC74323.1); Blastp hit to AAC74323.1 (891 aa), 40% identity in aa 574 - 860, 35% identity in aa 456 - 556" /codon_start=1 /transl_table=11 /product="propanediol utilization propanol dehydrogenase" /protein_id="NP_460997.1" /db_xref="GeneID:1253573" /translation="MNTFSLQTRLYSGQGSLAVLKRFTNKHIWIICDGFLAHSPLLDT LRNALPADNRISVFSEITPDPTIHTVVQGIAQMQALQPQVVIGFGGGSAMDAAKAIVW FSQQSGINIETCVAIPTTSGTGSEVTSACVISDPDKGIKYPLFNNALYPDMAILDPEL VVSVPPQITANTGMDVLTHALEAWVSPRASDFTDALAEKAAKLVFQYLPTAVEKGDCV ATRGKMHNASTLAGMAFSQAGLGLNHAIAHQLGGQFHLPHGLANALLLTTVIRFNAGV PRAAKRYARLAKACGFCPAEANDIAAINALIQQIELLKQRCVLPSLAVALKEGRSDFS ARIPAMVQAALADVTLRTNPRPANAEAIRELLEELL" misc_feature 2127633..2128724 /gene="pduQ" /locus_tag="STM2052" /note="1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism; Region: PDD; cd08180" /db_xref="CDD:341459" misc_feature order(2127720..2127722,2127891..2127899,2127906..2127908, 2127915..2127917,2127978..2127983,2127987..2127989, 2128044..2128049,2128101..2128103,2128125..2128127, 2128146..2128148,2128158..2128160,2128353..2128355, 2128365..2128367,2128395..2128397) /gene="pduQ" /locus_tag="STM2052" /note="putative active site [active]" /db_xref="CDD:341459" misc_feature order(2128146..2128148,2128158..2128160,2128353..2128355, 2128395..2128397) /gene="pduQ" /locus_tag="STM2052" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:341459" gene 2128726..2130088 /gene="pduS" /locus_tag="STM2053" /db_xref="GeneID:1253574" regulatory 2128726..2128731 /regulatory_class="ribosome_binding_site" /gene="pduQ" /locus_tag="STM2052" /note="putative RBS for pduS; RegulonDB:STMS1H002203" CDS 2128733..2130088 /gene="pduS" /locus_tag="STM2053" /note="polyhedral bodies; similar to E. coli putative membrane protein (AAC74701.1); Blastp hit to AAC74701.1 (740 aa), 33% identity in aa 131 - 448, 37% identity in aa 33 - 93" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460998.1" /db_xref="GeneID:1253574" /translation="MSTAINSVEMSLSADEIRERVRAAGVVGAGGAGFPAHVKLQAQV EIFLVNAAECEPMLKVDQQLMWQQAARLVRGVQYAMTATGAREGVIALKEKYRRAIDA LTPLLPDGIRLHILPDVYPAGDEVLTIWMATGRRVAPAALPASVGVVVNNVQTVLNIA RAVEQRFPVTRRTLTVNGAVARPLTVTVPIGMSLREVLALAGGATVDDPGFINGGPMM GGLITSLDNPVTKTTGGLLVLPKSHPLIQRRMQDERTVLSVARTVCEQCRLCTDLCPR HLIGHELSPHLLVRAVNFHQAATPQLLLSALTCSECNVCESVACPVGISPMRINRMLK RELRAQNQRYEGPLNPADEMAKYRLVPVKRLIAKLGLSPWYQEAPLVEEEPSVEKVTL QLRQHIGASAVANVAVGERVTRGQCVADVPPGALGAPIHASIDGVVSAISEQAITVVR G" misc_feature <2128832..2129767 /gene="pduS" /locus_tag="STM2053" /note="Na+-translocating ferredoxin:NAD+ oxidoreductase RNF, RnfC subunit [Energy production and conversion]; Region: RnfC; COG4656" /db_xref="CDD:443694" misc_feature 2129873..2130070 /gene="pduS" /locus_tag="STM2053" /note="RnfC Barrel sandwich hybrid domain; Region: RnfC_N; pfam13375" /db_xref="CDD:433157" gene 2130085..2130645 /gene="pduT" /locus_tag="STM2054" /db_xref="GeneID:1253575" regulatory 2130085..2130090 /regulatory_class="ribosome_binding_site" /gene="pduT" /locus_tag="STM2054" /note="putative RBS for pduT; RegulonDB:STMS1H002204" CDS 2130091..2130645 /gene="pduT" /locus_tag="STM2054" /note="polyhedral bodies; similar to E. coli detox protein (AAC75510.1); Blastp hit to AAC75510.1 (111 aa), 41% identity in aa 16 - 93, 31% identity in aa 16 - 90" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_460999.1" /db_xref="GeneID:1253575" /translation="MSQAIGILELTSIAKGMELGDAMLKSANVDLLVSKTICPGKFLL MLGGDIGAIQQAIETGTSQAGEMLVDSLVLANIHPSVLPAISGLNSVDKRQAVGIVET WSVAACISAADRAVKGSNVTLVRVHMAFGIGGKCYMVVAGDVSDVNNAVTVASESAGE KGLLVYRSVIPRPHEAMWRQMVEG" misc_feature 2130091..2130633 /gene="pduT" /locus_tag="STM2054" /note="PduT-like ethanolamine utilization protein; Region: eut_PduT; TIGR02526" /db_xref="CDD:131578" gene 2130638..2130995 /gene="pduU" /locus_tag="STM2055" /db_xref="GeneID:1253576" regulatory 2130638..2130643 /regulatory_class="ribosome_binding_site" /gene="pduU" /locus_tag="STM2055" /note="putative RBS for pduU; RegulonDB:STMS1H002205" CDS 2130645..2130995 /gene="pduU" /locus_tag="STM2055" /note="polyhedral bodies; propanediol utilization protein PDUU. (SW:PDUU_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_461000.1" /db_xref="GeneID:1253576" /translation="MERQPTTDRMIQEYVPGKQVTLAHLIANPGKDLFKKLGLQDAVS AIGILTITPSEASIIACDIATKSGAVEIGFLDRFTGAVVLTGDVSAVEYALKQVTRTL GEMMQFTTCSITRT" misc_feature 2130645..2130992 /gene="pduU" /locus_tag="STM2055" /note="Ethanolamine utilization protein EutS, microcompartment shell protein [Amino acid transport and metabolism]; Region: EutS; COG4810" /db_xref="CDD:443838" gene 2130995..2131452 /gene="pduV" /locus_tag="STM2056" /db_xref="GeneID:1253577" regulatory 2130995..2131000 /regulatory_class="ribosome_binding_site" /gene="pduV" /locus_tag="STM2056" /note="putative RBS for pduV; RegulonDB:STMS1H002206" CDS 2131000..2131452 /gene="pduV" /locus_tag="STM2056" /note="propanediol utilization protein PDUV. (SW:PDUV_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_461001.1" /db_xref="GeneID:1253577" /translation="MKRLMFIGPSQCGKTSLTQSLRGEALHYKKTQAIEWSPMAIDTP GEYLENRCLYSALLTSACEADVIALVLNADAQWSPFSPGFTAPMNRPTIGLVTKADLA EPQRISLVAEWLTQAGAQQIFITSALNNSGLDAVLDFLNSKEPLCLTK" misc_feature 2131000..2131407 /gene="pduV" /locus_tag="STM2056" /note="Ethanolamine utilization - propanediol utilization; Region: PduV-EutP; pfam10662" /db_xref="CDD:402341" gene 2131430..2132651 /gene="pduW" /locus_tag="STM2057" /db_xref="GeneID:1253578" regulatory 2131430..2131435 /regulatory_class="ribosome_binding_site" /gene="pduV" /locus_tag="STM2056" /note="putative RBS for pduW; RegulonDB:STMS1H002207" CDS 2131437..2132651 /gene="pduW" /locus_tag="STM2057" /EC_number="2.7.2.1" /note="probable propionate kinase. (SW:PDUW_SALTY)" /codon_start=1 /transl_table=11 /product="propanediol utilization propionate kinase" /protein_id="NP_461002.1" /db_xref="GeneID:1253578" /translation="MSYKIMAINAGSSSLKFQLLEMPQGDMLCQGLIERIGMADAQVT IKTHSQKWQETVPVADHRDAVTLLLEKLLGYQIINSLRDIDGVGHRVAHGGEFFKDST LVTDETLAQIERLAELAPLHNPVNALGIHVFRQLLPDAPSVAVFDTAFHQTLDEPAYI YPLPWHYYAELGIRRYGFHGTSHKYVSGVLAEKLGVPLSALRVICCHLGNGSSICAIK NGRSVNTSMGFTPQSGVMMGTRSGDIDPSILPWIAQRESKTPQQLNQLLNNESGLLGV SGVSSDYRDVEQAANTGNRQAKLALTLFAERIRATIGSYIMQMGGLDALVFTGGIGEN SARARSAVCHNLQFLGLAVDEEKNQRNATFIQTENALVKVAVINTNEELMIAQDVMRI ALPATEGLCVPA" misc_feature 2131437..2132648 /gene="pduW" /locus_tag="STM2057" /note="acetate/propionate family kinase; Region: PRK12397" /db_xref="CDD:183500" gene 2132709..2133611 /gene="pduX" /locus_tag="STM2058" /db_xref="GeneID:1253579" CDS 2132709..2133611 /gene="pduX" /locus_tag="STM2058" /codon_start=1 /transl_table=11 /product="propanediol utilization protein" /protein_id="NP_461003.1" /db_xref="GeneID:1253579" /translation="MRAHYSYLKGDNVAVAQCPASCGELIQGWILGSEKLVSCPVDWY STVAVTAAPPLINERPLSRAMVERVLAHWQYPAHWSNEIRVDVRSSIPVAKGMASSTA DIAATAVATAHHLGHSLDETTLAQLCVSIEPTDSTVFHQLTLFDHNNAATQIACEPPP PIDLLVLESPVTLRTQDYHRLPRQQKLIASSATLQQAWNLVQEACITQNPLRLGEAAT LSAIASQTLLPKPGFTALLSLVEECDLYGLNVAHSGSVVGLMLDRKRHDIARLKGKLA EKKLTRHWPKQHLLKMVTGGVKLQ" misc_feature 2132742..2133602 /gene="pduX" /locus_tag="STM2058" /note="PduX protein involved in propanediol utilization and related proteins [Secondary metabolites biosynthesis, transport and catabolism]; Region: PduX; COG4542" /db_xref="CDD:443608" gene complement(2133645..2133993) /gene="yeeX" /locus_tag="STM2059" /db_xref="GeneID:1253580" CDS complement(2133645..2133980) /gene="yeeX" /locus_tag="STM2059" /note="similar to E. coli putative alpha helix protein (AAC75068.1); Blastp hit to AAC75068.1 (131 aa), 93% identity in aa 23 - 131" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461004.1" /db_xref="GeneID:1253580" /translation="METTKPSFQDVLEFVRLFRRKNKLQREIQDIEKKIRDNQKRVLL LDNLSDYIKPGMSVEAIQGIIASMKSDYEDRVDDYIIKNAEISKERRDISKKLKAMGE MKHADVKAE" misc_feature complement(2133675..2133974) /gene="yeeX" /locus_tag="STM2059" /note="Protein of unknown function (DUF496); Region: DUF496; cl23839" /db_xref="CDD:474076" regulatory complement(2133988..2133993) /regulatory_class="ribosome_binding_site" /gene="yeeX" /locus_tag="STM2059" /note="putative RBS for yeeX; RegulonDB:STMS1H002208" gene complement(2134225..2135296) /gene="yeeA" /locus_tag="STM2060" /db_xref="GeneID:1253581" CDS complement(2134225..2135283) /gene="yeeA" /locus_tag="STM2060" /note="similar to E. coli orf, hypothetical protein (AAC75069.1); Blastp hit to AAC75069.1 (352 aa), 79% identity in aa 1 - 352" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461005.1" /db_xref="GeneID:1253581" /translation="MRADKSLSPFEIRLYRHYRIVHGIRIALAFILTFLLVRLFSIPE GTWPLITLVVIMGPISFWGNVVPRAFERIGGTILGAALGLVALRLELFSLPLMLVWCA IAMFLCGWLALGKKPYQALLIGITLAVVVGAPAGDMDTALWRGGDVILGSLLAMLFTG IWPQRAFLHWRIQLAHCVTAYNRVYQAALSPNLLERPRLDKHLQRLLNDVVKMRGLIT PASKETRIQKSIFEAIQTINRNLVCMLELQINAHWATRASHFVMLNAHTLRETQQMTQ QTLLTIAHALFEGNPQPVLANTGKLNDIAAELRQLMNEQQGDAVAETPIHGYVWLSME TARQLELLSHLICRALRK" misc_feature complement(2134543..2135238) /gene="yeeA" /locus_tag="STM2060" /note="Uncharacterized membrane protein YccC [Function unknown]; Region: YccC; COG1289" /db_xref="CDD:440900" regulatory complement(2135291..2135296) /regulatory_class="ribosome_binding_site" /gene="yeeA" /locus_tag="STM2060" /note="putative RBS for yeeA; RegulonDB:STMS1H002209" gene complement(2135402..2135880) /gene="sbmC" /locus_tag="STM2061" /db_xref="GeneID:1253582" CDS complement(2135402..2135869) /gene="sbmC" /locus_tag="STM2061" /note="DNA gyrase inhibitory protein homolog. (SW:GYRI_SALTY)" /codon_start=1 /transl_table=11 /product="DNA gyrase inhibitor" /protein_id="NP_461006.1" /db_xref="GeneID:1253582" /translation="MDYEIRQEQKRKIAGFHMVGPWEHTVKQGFEQLMTWVDRQRIVP VEWIAVYYDNPDVVPAEKLRCDTVVSVAENFILPDNSEGVIVTAIEGGEYATAVARVE DRDFAKPWERFFDVLEQDSAYQIASAPCFETYLNNGMEDGYWDIEMYIPVQRK" misc_feature complement(2135405..2135869) /gene="sbmC" /locus_tag="STM2061" /note="DNA gyrase inhibitor SbmC; Region: PRK10016" /db_xref="CDD:182195" regulatory complement(2135875..2135880) /regulatory_class="ribosome_binding_site" /gene="sbmC" /locus_tag="STM2061" /note="putative RBS for sbmC; RegulonDB:STMS1H002210" gene complement(2136022..2137200) /gene="dacD" /locus_tag="STM2062" /db_xref="GeneID:1253583" CDS complement(2136022..2137194) /gene="dacD" /locus_tag="STM2062" /EC_number="3.4.16.4" /note="penicillin-binding protein 6b; penicillin-binding protein 6B precursor (D-alanyl-D-alaninecarboxypeptidase). (SW:DACD_SALTY)" /codon_start=1 /transl_table=11 /product="DD-carboxypeptidase" /protein_id="NP_461007.1" /db_xref="GeneID:1253583" /translation="MLLKRRLFIAASLFAMHLSPALAADAVSFAPQPPAIDAGAWVLM DYTTGQVLTAGNEHQQRNPASLTKLMTGYVVDRAIDSHRISPDDIVTVGRDAWAKDNP VFVGSSLMFLKEGDRVSVRDLSRGLIVDSGNDACVALADYIAGGQPQFVAMMNSYVKK LNLQDTHFETVHGLDAPGQHSSAYDLAVLSRAIIHGEPEFYHMYSEKSLTWNGITQQN RNGLLWDKTMHIDGLKTGHTSGAGFNLIASAVDGQRRLIAVVMGAKSSKGREEQARKL LQWGQQNFATVQILHSGKKVGSERIWYGDKEKIALGTEQDFWMALPKAEIPHIKAKYV LDRKELEAPIAAHQQVGEIELYDRDKLIAQWPLVTLESVGKGGMFSRLSDYFQHKA" misc_feature complement(2136025..2137188) /gene="dacD" /locus_tag="STM2062" /note="serine-type D-Ala-D-Ala carboxypeptidase DacD; Region: dacD; PRK11397" /db_xref="CDD:183117" regulatory complement(2137195..2137200) /regulatory_class="ribosome_binding_site" /gene="dacD" /locus_tag="STM2062" /note="putative RBS for dacD; RegulonDB:STMS1H002211" gene complement(2137318..2138096) /gene="phsC" /locus_tag="STM2063" /db_xref="GeneID:1253584" CDS complement(2137318..2138082) /gene="phsC" /locus_tag="STM2063" /note="thiosulfate reductase cytochrome B subunit. (SW:PHSC_SALTY)" /codon_start=1 /transl_table=11 /product="hydrogen sulfide production membrane anchoring protein" /protein_id="NP_461008.1" /db_xref="GeneID:1253584" /translation="MNTIWGAELHYAPDYWPLWLIYAGVVVLLMLVGLVIHALLRRML APKTAGGEEHRDYLYSLAIRRWHWGNALLFVLLLLSGLFGHFSLGPVALMVQVHTWCG FALLAFWVGFVLINLTTGNGRHYRVNFSGLVTRCIRQTRFYLFGIMKGEAHPFVATEQ NKFNPLQQLAYLAIMYALVPLLIITGLLCLYPQVAGLGPVMLVLHMALAIIGLLFICA HLYLCTLGDTPGQIFRSMVDGYHRHRTAPRGDKSAV" misc_feature complement(2137354..2138082) /gene="phsC" /locus_tag="STM2063" /note="thiosulfate reductase cytochrome B subunit; Provisional; Region: PRK15006" /db_xref="CDD:184968" gene complement(2138079..2138665) /gene="phsB" /locus_tag="STM2064" /db_xref="GeneID:1253585" CDS complement(2138079..2138657) /gene="phsB" /locus_tag="STM2064" /note="electron transfer; thiosulfate reductase electron transport proteinPHSB. (SW:PHSB_SALTY)" /codon_start=1 /transl_table=11 /product="hydrogen sulfide production iron-sulfur subunit" /protein_id="NP_461009.1" /db_xref="GeneID:1253585" /translation="MNHLTNQYVMLHDEKRCIGCQACTVACKVLNDVPEGFSRVQVQI RAPEQASNALTHFQFVRVSCQHCENAPCVSVCPTGASYRDENGIVQVDKSRCIGCDYC VAACPFHVRYLNPQTGVADKCNFCADTRLAAGQSPACVSVCPTDALKFGRLDESEIQR WVGQKEVYRQQEARSGAVSLYRRKEVHQEGKA" misc_feature complement(2138142..2138630) /gene="phsB" /locus_tag="STM2064" /note="polysulfide reductase beta (PsrB) subunit; Region: PsrB; cd10551" /db_xref="CDD:319873" misc_feature complement(order(2138145..2138147,2138172..2138174, 2138220..2138237,2138268..2138270,2138274..2138276, 2138301..2138306,2138319..2138327,2138331..2138351, 2138358..2138381,2138421..2138438,2138481..2138483, 2138487..2138489,2138520..2138537,2138544..2138549, 2138568..2138576,2138580..2138588,2138592..2138594, 2138598..2138618)) /gene="phsB" /locus_tag="STM2064" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:319873" misc_feature complement(order(2138214..2138219,2138223..2138225, 2138229..2138234,2138241..2138249,2138280..2138294, 2138298..2138300,2138325..2138330,2138334..2138342, 2138352..2138372,2138391..2138393,2138415..2138417, 2138427..2138432,2138442..2138444,2138448..2138450, 2138457..2138471,2138475..2138477,2138532..2138534, 2138538..2138543,2138565..2138567,2138577..2138579, 2138589..2138594,2138598..2138609)) /gene="phsB" /locus_tag="STM2064" /note="Fe-S cluster binding site [ion binding]; other site" /db_xref="CDD:319873" regulatory complement(2138091..2138096) /regulatory_class="ribosome_binding_site" /gene="phsB" /locus_tag="STM2064" /note="putative RBS for phsC; RegulonDB:STMS1H002212" regulatory complement(2138660..2138665) /regulatory_class="ribosome_binding_site" /gene="phsB" /locus_tag="STM2064" /note="putative RBS for phsB; RegulonDB:STMS1H002213" gene complement(2138672..2140956) /gene="phsA" /locus_tag="STM2065" /db_xref="GeneID:1253586" CDS complement(2138672..2140948) /gene="phsA" /locus_tag="STM2065" /note="thiosulfate reductase precursor. (SW:PHSA_SALTY)" /codon_start=1 /transl_table=11 /product="hydrogen sulfide production membrane anchoring protein" /protein_id="NP_461010.1" /db_xref="GeneID:1253586" /translation="MSISRRSFLQGVGIGCSACALGAFPPGALARNPIAGINGKTTLT PSLCEMCSFRCPIQAQVVNNKTVFIQGNPSAPQQGTRICARGGSGVSLVNDPQRIVKP MKRTGPRGDGEWQVISWQQAYQEIAAKMNAIKAQHGPESVAFSSKSGSLSSHLFHLAT AFGSPNTFTHASTCPAGKAIAAKVMMGGDLAMDIANTRYLVSFGHNLYEGIEVADTHE LMTAQEKGAKMVSFDPRLSIFSSKADEWHAIRPGGDLAVLLAMCHVMIDEQLYDASFV ERYTSGFEQLAQAVKETTPEWAAAQADVPADVIVRVTRELAACAPHAIVSPGHRATFS QEEIDMRRMIFTLNVLLGNIEREGGLYQKKNASVYNKLAGEKVAPTLAKLNIKNMPKP TAQRIDLVAPQFKYIAAGGGVVQSIIDSALTQKPYPIKAWIMSRHNPFQTVTCRSDLV KTVEQLDLVVSCDVYLSESAAYADYLLPECTYLERDEEVSDMSGLHPAYALRQQVVEP IGEARPSWQIWKELGEQLGLGQYYPWQDMQTRQLYQLNGDHALAKELRQKGYLEWGVP LLLREPESVRQFTARYPGAIATDSDNTYGEQLRFKSPSGKIELYSATLEELLPGYGVP RVRDFALKKENELYFIQGKVAVHTNGATQYVPLLSELMWDNAVWVHPQTAQEKGIKTG DEIWLENATGKEKGKALVTPGIRPDTLFVYMGFGAKAGAKTAATTHGIHCGNLLPHVT SPVSGTVVHTAGVTLSRA" misc_feature complement(2138675..2140948) /gene="phsA" /locus_tag="STM2065" /note="thiosulfate reductase PhsA; Provisional; Region: PRK15488" /db_xref="CDD:237973" regulatory complement(2140951..2140956) /regulatory_class="ribosome_binding_site" /gene="phsA" /locus_tag="STM2065" /note="putative RBS for phsA; RegulonDB:STMS1H002214" gene 2141556..2143915 /gene="sopA" /locus_tag="STM2066" /db_xref="GeneID:1253587" regulatory 2141556..2141561 /regulatory_class="ribosome_binding_site" /gene="sopA" /locus_tag="STM2066" /note="putative RBS for sopA; RegulonDB:STMS1H002215" CDS 2141567..2143915 /gene="sopA" /locus_tag="STM2066" /note="similar to secreted effector protein of Salmonella dublin; similar to E. coli orf, hypothetical protein (AAC77008.1); Blastp hit to AAC77008.1 (442 aa), 24% identity in aa 194 - 432, 20% identity in aa 59 - 151, 23% identity in aa 34 - 71, 32% identity in aa 19 - 50" /codon_start=1 /transl_table=11 /product="secreted effector protein of Salmonella" /protein_id="NP_461011.1" /db_xref="GeneID:1253587" /translation="MKISSGAINFSTIPNQVKKLITSIREHTKNGLTSKITSVKNTHT SLNEKFKTGKDSPIEFALPQKIKDFFQPKDKNTLNKTLITVKNIKDTNNAGKKNISAE DVSKMNAAFMRKHIANQTCDYNYRMTGAAPLPGGVSVSANNRPTVSEGRTPPVSPSLS LQATSSPSSPADWAKKLTDAVLRQKAGETLTAADRDFSNADFRNITFSKILPPSFMER DGDIIKGFNFSNSKFTYSDISHLHFDECRFTYSTLSDVVCSNTKFSNSDMNEVFLQYS ITTQQQPSFIDTTLKNTLIRHKANLSGVILNEPDNSSPPSVSGGGNFIRLGDIWLQMP LLWTENAVDGFLNHEHNNGKSILMTIDSLPDKYSQEKVQAMEDLVKSLRGGRLTEACI RPVESSLVSVLAHPPYTQSALISEWLGPVQERFFAHQCQTYNDVPLPAPDTYYQQRIL PVLLDSFDRNSAAMTTHSGLFNQVILHCMTGVDCTDGTRQKAAALYEQYLAHPAVSPH IHNGLFGNYDGSPDWTTRAADNFLLLSSQDSDTAMMLSTDTLLTMLNPTPDTAWDNFY LLRAGENVSTAQISPVELFRHDFPVFLAAFNQQATQRRFGELIDIILSTEEHGELNQQ FLAATNQKHSTVKLIDDASVSRLATIFDPLLPEGKLSPAHYQHILSAYHLTDATPQKQ AETLFCLSTAFARYSSSAIFGTEHDSPPALRGYAEALMQKAWELSPAIFPSSEQFTEW SDRFHGLHGAFTCTSVVADSMQRHARKYFPSVLSSILPLAWA" misc_feature 2141567..2143912 /gene="sopA" /locus_tag="STM2066" /note="type III secretion system effector HECT-type E3 ubiquitin transferase; Region: PRK15377" /db_xref="CDD:185275" gene 2144242..2145688 /gene="sbcB" /locus_tag="STM2067" /db_xref="GeneID:1253588" regulatory 2144242..2144247 /regulatory_class="ribosome_binding_site" /gene="sbcB" /locus_tag="STM2067" /note="putative RBS for sbcB; RegulonDB:STMS1H002216" CDS 2144258..2145688 /gene="sbcB" /locus_tag="STM2067" /EC_number="3.1.11.1" /note="3' --> 5' specific; deoxyribophosphodiesterase; similar to E. coli exonuclease I, 3' --> 5' specific; deoxyribophosphodiesterase (AAC75072.1); Blastp hit to AAC75072.1 (475 aa), 93% identity in aa 8 - 475" /codon_start=1 /transl_table=11 /product="exonuclease I" /protein_id="NP_461012.1" /db_xref="GeneID:1253588" /translation="MTVKNDSIQSTFLFHDYETFGTHPALDRPAQFAALRTDNDFNVI GEPEVFYCKPADDYLPQPGAVLITGITPQEAREKGENEAAFARRIHALFTVPKTCVVG YNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDD GLPSFRLEHLTRANGIEHSNAHDAMADVYATIAMAQLVKTRQPRLFDYLYSHRSKHKL AALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELD SDTLRERLYTAKADLGDHAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDN LKVLRENPQVRDKVVAIFAEAEPFAASDNVDAQLYDGFFSDADRAAMKIVLETEPRNL PALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRWLEHRRQVLTPEFLQQYANELQM LSQQYAEDKTKLGLLKSLWQYATEIV" misc_feature 2144270..2145685 /gene="sbcB" /locus_tag="STM2067" /note="exonuclease I; Provisional; Region: sbcB; PRK11779" /db_xref="CDD:236979" gene complement(2145824..2147195) /gene="yeeF" /locus_tag="STM2068" /db_xref="GeneID:1253589" CDS complement(2145824..2147188) /gene="yeeF" /locus_tag="STM2068" /note="similar to E. coli putative amino acid/amine transport protein (AAC75075.1); Blastp hit to AAC75075.1 (454 aa), 99% identity in aa 1 - 454" /codon_start=1 /transl_table=11 /product="putative APC family amino acid transport protein" /protein_id="NP_461013.1" /db_xref="GeneID:1253589" /translation="MTMSHNVTPNTSRVELRKTLTLVPVVMMGLAYMQPMTLFDTFGI VSGLTDGHVPTAYAFALIAILFTALSYGKLVRRYPSAGSAYTYAQKSISPTVGFMVGW SSLLDYLFAPMINILLAKIYFEALVPSIPSWVFVVALVAFMTAFNLRSLKSVANFNTV IVVLQVVLIAVILGMVVYGVFEGEGAGTLASTRPFWSGDAHVIPMITGATILCFSFTG FDGISNLSEETKDAERVIPRAIFLTALIGGLIFIFATYFLQLYFPDISRFKDPDASQP EIMLYVAGKTFQVGALIFSTITVLASGMAAHAGVARLMYVMGRDGVFPKSFFGYVHPK WRTPAMNIILVGAIALLAINFDLVMATALINFGALVAFTFVNLSVISQFWIREKRNKT LKDHFQYLFLPMCGALTVGALWVNLEESSMVLGLIWAGIGLIYLACVTKSFRNPVPQY EDVA" misc_feature complement(2145878..2147161) /gene="yeeF" /locus_tag="STM2068" /note="Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism]; Region: PotE; COG0531" /db_xref="CDD:440297" regulatory complement(2147190..2147195) /regulatory_class="ribosome_binding_site" /gene="yeeF" /locus_tag="STM2068" /note="putative RBS for yeeF; RegulonDB:STMS1H002217" gene complement(2147468..2148394) /gene="yeeY" /locus_tag="STM2069" /db_xref="GeneID:1253590" CDS complement(2147468..2148382) /gene="yeeY" /locus_tag="STM2069" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC75076.1); Blastp hit to AAC75076.1 (316 aa), 87% identity in aa 8 - 309" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461014.1" /db_xref="GeneID:1253590" /translation="MKPLLDVLIILDALEKEGSFAAASAKLFKTPSALSYTVHKLEND LNIQLLDRSGHRARFTRTGKMLLEKGREVLHTVRELEKQAIKLHEGWENELVIGVDDT FPFSLLAPLIDAFYQRHSVTRLKFVNGVLGGSWETLTQGRADIIVGAMRAPPPDTGFG FARLGDLELVFAVAPHHPLVHEEEPLSRQTIKRFRAIVVGDSVHSSRSIGSELLDAQE AITVFDFKTKLELQISGLGCGYLPRYLAQRFLESGALIEKKVVAQIVYEPVWVGWNEQ TAGLASGWWRDEILANNAIAGVYAKSPV" misc_feature complement(2148191..2148370) /gene="yeeY" /locus_tag="STM2069" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature complement(2147516..2148103) /gene="yeeY" /locus_tag="STM2069" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" misc_feature complement(order(2147681..2147686,2147690..2147695, 2147711..2147728,2147999..2148019,2148023..2148025, 2148035..2148037,2148044..2148049,2148053..2148058)) /gene="yeeY" /locus_tag="STM2069" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" regulatory complement(2148389..2148394) /regulatory_class="ribosome_binding_site" /gene="yeeY" /locus_tag="STM2069" /note="putative RBS for yeeY; RegulonDB:STMS1H002218" gene complement(2148428..2149265) /gene="yeeZ" /locus_tag="STM2070" /db_xref="GeneID:1253591" CDS complement(2148428..2149252) /gene="yeeZ" /locus_tag="STM2070" /note="similar to E. coli putative enzyme of sugar metabolism (AAC75077.1); Blastp hit to AAC75077.1 (274 aa), 89% identity in aa 1 - 274" /codon_start=1 /transl_table=11 /product="putative dehydratase" /protein_id="NP_461015.1" /db_xref="GeneID:1253591" /translation="MKKVAIVGLGWLGMPLAMSLAARGWQVTGSKTTLDGVEAARMSG IESYPLRLEPELVCEADDLDALLDVDALVITLPARRSGPGEDFYLQAMQELVDSALAY RIPRIIFTSSTSVYGDAQGVVKENTPRNPVTASGRTLKELEDWLHNLPGTSVDILRLA GLVGPGRHPGRFFAGKTAPDGQHGVNLVHLEDVVGAITLLLQAPKGGHIYNICAPAHP ARNVFYPQMTRLLGMAPPHFRDAPDNGKGKIIDGSRICNELGFEYQYPDPLVMPME" misc_feature complement(2148476..2149243) /gene="yeeZ" /locus_tag="STM2070" /note="atypical (a) SDRs, subgroup 4; Region: SDR_a4; cd05266" /db_xref="CDD:187576" misc_feature complement(order(2148767..2148778,2148836..2148838, 2148848..2148850,2148917..2148925,2149022..2149030, 2149154..2149162,2149217..2149225,2149229..2149231)) /gene="yeeZ" /locus_tag="STM2070" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187576" regulatory complement(2149260..2149265) /regulatory_class="ribosome_binding_site" /gene="yeeZ" /locus_tag="STM2070" /note="putative RBS for yeeZ; RegulonDB:STMS1H002219" gene 2149600..2150511 /gene="hisG" /locus_tag="STM2071" /db_xref="GeneID:1253592" regulatory 2149600..2149605 /regulatory_class="ribosome_binding_site" /gene="hisG" /locus_tag="STM2071" /note="putative RBS for hisG; RegulonDB:STMS1H002220" CDS 2149612..2150511 /gene="hisG" /locus_tag="STM2071" /EC_number="2.4.2.17" /note="ATP phosphoribosyltransferase. (SW:HIS1_SALTY)" /codon_start=1 /transl_table=11 /product="ATP phosphoribosyltransferase" /protein_id="NP_461016.1" /db_xref="GeneID:1253592" /translation="MLDNTRLRIAIQKSGRLSDDSRELLARCGIKINLHTQRLIAMAE NMPIDILRVRDDDIPGLVMDGVVDLGIIGENVLEEELLNRRAQGEDPRYLTLRRLDFG GCRLSLATPVDEAWDGPAALDGKRIATSYPHLLKRYLDQKGVSFKSCLLNGSVEVAPR AGLADAICDLVSTGATLEANGLREVEVIYRSKACLIQRDGEMAQSKQELIDKLLTRIQ GVIQARESKYIMMHAPSERLEEVIALLPGAERPTILPLAGEQQRVAMHMVSSETLFWE TMEKLKALGASSILVLPIEKMME" misc_feature 2149624..2150505 /gene="hisG" /locus_tag="STM2071" /note="ATP phosphoribosyltransferase [Amino acid transport and metabolism]; Region: HisG; COG0040" /db_xref="CDD:439810" gene 2150600..2151918 /gene="hisD" /locus_tag="STM2072" /db_xref="GeneID:1253593" regulatory 2150600..2150605 /regulatory_class="ribosome_binding_site" /gene="hisD" /locus_tag="STM2072" /note="putative RBS for hisD; RegulonDB:STMS1H002221" CDS 2150614..2151918 /gene="hisD" /locus_tag="STM2072" /EC_number="1.1.1.23" /note="histidinol dehydrogenase. (SW:HISX_SALTY)" /codon_start=1 /transl_table=11 /product="histidinal dehydrogenase" /protein_id="NP_461017.1" /db_xref="GeneID:1253593" /translation="MSFNTLIDWNSCSPEQQRALLTRPAISASDSITRTVSDILDNVK TRGDDALREYSAKFDKTEVTALRVTPEEIAAAGARLSDELKQAMTAAVKNIETFHSAQ TLPPVDVETQPGVRCQQVTRPVSSVGLYIPGGSAPLFSTVLMLATPARIAGCQKVVLC SPPPIADEILYAAQLCGVQEIFNVGGAQAIAALAFGSESVPKVDKIFGPGNAFVTEAK RQVSQRLDGAAIDMPAGPSEVLVIADSGATPDFVASDLLSQAEHGPDSQVILLTPDAD IARKVAEAVERQLAELPRADTARQALSASRLIVTKDLAQCVAISNQYGPEHLIIQTRN ARDLVDAITSAGSVFLGDWSPESAGDYASGTNHVLPTYGYTATCSSLGLADFQKRMTV QELSKAGFSALASTIETLAAAERLTAHKNAVTLRVNALKEQA" misc_feature 2150626..2151894 /gene="hisD" /locus_tag="STM2072" /note="bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed; Region: hisD; PRK00877" /db_xref="CDD:234853" misc_feature order(2150785..2150787,2151001..2151003,2151007..2151012, 2151034..2151036,2151097..2151099,2151166..2151171, 2151175..2151177,2151238..2151246,2151250..2151255, 2151397..2151399) /gene="hisD" /locus_tag="STM2072" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature order(2150860..2150865,2150872..2150877,2150881..2150883, 2150890..2150895,2150902..2150907,2150914..2150919, 2150938..2150940,2150944..2150946,2150956..2150970, 2150977..2150979,2150983..2150985,2151019..2151033, 2151223..2151225,2151268..2151270,2151280..2151282, 2151361..2151366,2151373..2151378,2151382..2151390, 2151394..2151399,2151604..2151606,2151619..2151621, 2151628..2151633,2151637..2151663,2151667..2151669, 2151673..2151678,2151682..2151696,2151700..2151702, 2151706..2151708,2151736..2151741,2151745..2151759, 2151763..2151768,2151775..2151798,2151841..2151846, 2151850..2151870) /gene="hisD" /locus_tag="STM2072" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:119329" misc_feature order(2151025..2151027,2151031..2151033,2151322..2151324, 2151397..2151399,2151589..2151594,2151679..2151681, 2151691..2151696,2151712..2151714,2151853..2151855, 2151859..2151861,2151868..2151870) /gene="hisD" /locus_tag="STM2072" /note="product binding site [active]" /db_xref="CDD:119329" misc_feature order(2151031..2151033,2151322..2151324,2151388..2151390, 2151397..2151399,2151589..2151594,2151679..2151681, 2151691..2151696,2151712..2151714,2151853..2151855, 2151859..2151861,2151868..2151870) /gene="hisD" /locus_tag="STM2072" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119329" misc_feature order(2151388..2151390,2151397..2151399,2151691..2151693, 2151868..2151870) /gene="hisD" /locus_tag="STM2072" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:119329" misc_feature 2151589..2151594 /gene="hisD" /locus_tag="STM2072" /note="catalytic residues [active]" /db_xref="CDD:119329" gene 2151904..2152994 /gene="hisC" /locus_tag="STM2073" /db_xref="GeneID:1253594" regulatory 2151904..2151909 /regulatory_class="ribosome_binding_site" /gene="hisC" /locus_tag="STM2073" /note="putative RBS for hisC; RegulonDB:STMS1H002222" CDS 2151915..2152994 /gene="hisC" /locus_tag="STM2073" /EC_number="2.6.1.9" /note="histidinol-phosphate aminotransferase. (SW:HIS8_SALTY)" /codon_start=1 /transl_table=11 /product="histidinol phosphate aminotransferase" /protein_id="NP_461018.1" /db_xref="GeneID:1253594" /translation="MSTENTLSVADLARENVRNLVPYQSARRLGGNGDVWLNANEFPT AVEFQLTQQTLNRYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELVIRAFCEPG KDAILYCPPTYGMYSVSAETIGVERRTVPALENWQLDLQGISDNLDGTKVVFVCSPNN PTGQLINPQDLRTLLELTRGKAIVVADEAYIEFCPQATLTGWLVEYPHLVILRTLSKA FALAGLRCGFTLANEEVINLLLKVIAPYPLSTPVADIAAQALCPQGINAMRDRVAQTV QERQYLVNALQQTACVEHVFDSETNYILARFTASSSVFKSLWDQGIILRDQNKQPSLS GCLRITVGTRQENQRVIDALRAEPV" misc_feature 2151954..2152979 /gene="hisC" /locus_tag="STM2073" /note="histidinol-phosphate aminotransferase; Region: hisC; TIGR01141" /db_xref="CDD:273467" gene 2152980..2154058 /gene="hisB" /locus_tag="STM2074" /db_xref="GeneID:1253595" regulatory 2152980..2152985 /regulatory_class="ribosome_binding_site" /gene="hisB" /locus_tag="STM2074" /note="putative RBS for hisB; RegulonDB:STMS1H002223" CDS 2152991..2154058 /gene="hisB" /locus_tag="STM2074" /EC_number="3.1.3.15" /EC_number="4.2.1.19" /note="bifunctional; histidine biosynthesis bifunctional protein HISB [includes:histidinol-phosphatase ]. (SW:HIS7_SALTY); imidazole glycerol-phosphate dehydratase" /codon_start=1 /transl_table=11 /product="histidinol-phosphatase" /protein_id="NP_461019.1" /db_xref="GeneID:1253595" /translation="MSQKYLFIDRDGTLISEPPSDFQVDRFDKLAFEPEVIPVLLKLQ KAGFKLVMITNQDGLGTQSFPQADFDGPHNLMMQIFTSQGVCFDEVLICPHLPADDCD CRKPKVKLVERYLAEQAMDSANSYVIGDRATDIQLADNMGITGLRYHRETLNWTMIGE QLTKRDRYAHVVRNTKETQIDVSVWLDREGNSKINTGVGFFDHMLDQIATHGGFRMEI TVKGDLYIDDHHTVEDTGLALGEALKLALGDKRGICRFGFVLPMDECLARCALDISGR PHLEYKAEFTYQRVGDLSTEMIEHFFRSLSYTMGVTLHLKTKGKNDHHRVESLFKAFG RTLRQAIRVEGDTLPSSKGVL" misc_feature 2152994..2154055 /gene="hisB" /locus_tag="STM2074" /note="bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB; Region: PRK05446" /db_xref="CDD:235471" gene 2154045..2154648 /gene="hisH" /locus_tag="STM2075" /db_xref="GeneID:1253596" regulatory 2154045..2154050 /regulatory_class="ribosome_binding_site" /gene="hisH" /locus_tag="STM2075" /note="putative RBS for hisH; RegulonDB:STMS1H002224" CDS 2154055..2154648 /gene="hisH" /locus_tag="STM2075" /EC_number="2.4.2.-" /note="subunit with HisF; amidotransferase HISH. (SW:HIS5_SALTY)" /codon_start=1 /transl_table=11 /product="glutamine amidotransferase" /protein_id="NP_461020.3" /db_xref="GeneID:1253596" /translation="MMNVVILDTGCANLSSVKSAVARHGYTPVVSREAEIVLRADKLF LPGVGTAQAAMDQLRERELIDLIKACTQPVLGICLGMQLLGRRSEETRGVDLLNIIEQ DVPKMTDFGLPLPHMGWNRVYPQAGNRLFQGIEDGAYFYFVHSYAMPVNPWTIAQCNY GEPFTAAVQKDNFFGVQFHPERSGAAGAQLLKNFLEM" misc_feature 2154058..2154645 /gene="hisH" /locus_tag="STM2075" /note="imidazole glycerol phosphate synthase subunit HisH; Provisional; Region: hisH; PRK13170" /db_xref="CDD:183877" misc_feature order(2154178..2154201,2154280..2154294,2154589..2154591, 2154595..2154597) /gene="hisH" /locus_tag="STM2075" /note="putative active site [active]" /db_xref="CDD:153219" misc_feature 2154178..2154201 /gene="hisH" /locus_tag="STM2075" /note="oxyanion strand [active]" /db_xref="CDD:153219" misc_feature order(2154286..2154288,2154589..2154591,2154595..2154597) /gene="hisH" /locus_tag="STM2075" /note="catalytic triad [active]" /db_xref="CDD:153219" gene 2154637..2155385 /gene="hisA" /locus_tag="STM2076" /db_xref="GeneID:1253597" regulatory 2154637..2154642 /regulatory_class="ribosome_binding_site" /gene="hisH" /locus_tag="STM2075" /note="putative RBS for hisA; RegulonDB:STMS1H002225" CDS 2154648..2155385 /gene="hisA" /locus_tag="STM2076" /EC_number="5.3.1.16" /note="phosphoribosylformimino-5-aminoimidazole carboxamide ribotideisomerase. (SW:HIS4_SALTY)" /codon_start=1 /transl_table=11 /product="N-(5'-phospho-L-ribosyl-formimino)-5-amino-1- (5'-phosphoribosyl)-4-imidazolecarboxamide isomerase" /protein_id="NP_461021.1" /db_xref="GeneID:1253597" /translation="MIIPALDLIDGTVVRLHQGDYARQRDYGNDPLPRLQDYAAQGAG VLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRTEEDVAALLKAGVARVVIG STAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETY LPVGLKHVLCTDISRDGTLAGSNVSLYEEVCARYPQIAFQSSGGIGDIDDIAALRGTG VRGVIVGRALLEGKFTVKEAIQCWQNV" misc_feature 2154648..2155361 /gene="hisA" /locus_tag="STM2076" /note="1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated; Region: PRK00748" /db_xref="CDD:179108" misc_feature order(2154666..2154668,2154786..2154788,2155032..2155034) /gene="hisA" /locus_tag="STM2076" /note="catalytic residues [active]" /db_xref="CDD:240083" gene 2155353..2156143 /gene="hisF" /locus_tag="STM2077" /db_xref="GeneID:1253598" regulatory 2155353..2155358 /regulatory_class="ribosome_binding_site" /gene="hisA" /locus_tag="STM2076" /note="putative RBS for hisF; RegulonDB:STMS1H002226" CDS 2155367..2156143 /gene="hisF" /locus_tag="STM2077" /EC_number="2.4.2.-" /note="subunit with HisH; HISF protein (cyclase). (SW:HIS6_SALTY)" /codon_start=1 /transl_table=11 /product="imidazole glycerol phosphate synthase" /protein_id="NP_461022.1" /db_xref="GeneID:1253598" /translation="MLAKRIIPCLDVRDGQVVKGVQFRNHEIIGDIVPLAKRYADEGA DELVFYDITASSDGRVVDKSWVARVAEVIDIPFCVAGGIRSIDDAAKILSFGADKISI NSPALADPTLITRLADRFGVQCIVVGIDTWFDDATGKYHVNQYTGDENRTRVTQWETL DWVQEVQQRGAGEIVLNMMNQDGVRNGYDLTQLKKVRDVCRVPLIASGGAGTMEHFLE AFRDADVDGALAASVFHKQIINIGELKAYLAGQGVEIRIC" misc_feature 2155370..2156137 /gene="hisF" /locus_tag="STM2077" /note="Imidazole glycerol phosphate synthase subunit HisF [Amino acid transport and metabolism]; Region: HisF; COG0107" /db_xref="CDD:439877" gene 2156131..2156748 /gene="hisI" /locus_tag="STM2078" /db_xref="GeneID:1253599" regulatory 2156131..2156136 /regulatory_class="ribosome_binding_site" /gene="hisI" /locus_tag="STM2078" /note="putative RBS for hisI; RegulonDB:STMS1H002227" CDS 2156137..2156748 /gene="hisI" /locus_tag="STM2078" /EC_number="3.5.4.19" /EC_number="3.6.1.31" /note="bifunctional; histidine biosynthesis bifunctional protein HISIE [includes:phosphoribosyl-amp cyclohydrolase ]. (SW:HIS2_SALTY); phosphoribosyl-ATP pyrophosphatase" /codon_start=1 /transl_table=11 /product="phosphoribosyl-AMP cyclohydrolase" /protein_id="NP_461023.1" /db_xref="GeneID:1253599" /translation="MLTEQQRRELDWEKTDGLMPAIVQHAVSGEVLMLGYMNPQALDK TIESGHVTFFSRTKQRLWTKGETSGHVLNVVSIAPDCDNDTLLVLANPVGPTCHKGTS SCFGDASHQWLFLYQLEQLLAERKTADPTSSYTAKLYASGTKRIAQKVGEEGVETALA ATVNDRFELTNEASDLMYHLLVLLQDQDLNLTTVIDNLRKRHQ" misc_feature 2156143..2156742 /gene="hisI" /locus_tag="STM2078" /note="bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE; Region: PRK02759" /db_xref="CDD:235067" gene complement(2156829..2157822) /gene="wzzB" /locus_tag="STM2079" /db_xref="GeneID:1253600" CDS complement(2156829..2157812) /gene="wzzB" /locus_tag="STM2079" /note="chain length determinant protein (polysaccharide antigen chainregulator). (SW:WZZB_SALTY)" /codon_start=1 /transl_table=11 /product="regulator of length of O-antigen component of lipopolysaccharide chains" /protein_id="NP_461024.1" /db_xref="GeneID:1253600" /translation="MTVDSNTSSGRGNDPEQIDLIELLLQLWRGKMTIIVAVIIAILL AVGYLMIAKEKWTSTAIITQPDAAQVATYTNALNVLYGGNAPKISEVQANFISRFSSA FSALSEVLDNQKEREKLTIEQSVKGQALPLSVSYVSTTAEGAQRRLAEYIQQVDEEVA KELEVDLKDNITLQTKTLQESLETQEVVAQEQKDLRIKQIEEALRYADEAKITQPQIQ QTQDVTQDTMFLLGSDALKSMIQNEATRPLVFSPAYYQTKQTLLDIKNLKVTADTVHV YRYVMKPTLPVRRDSPKTAITLVLAVLLGGMIGAGIVLGRNALRSYKPKAL" misc_feature complement(2156838..2157812) /gene="wzzB" /locus_tag="STM2079" /note="chain length determinant protein WzzB; Provisional; Region: PRK15471" /db_xref="CDD:185368" regulatory complement(2157817..2157822) /regulatory_class="ribosome_binding_site" /gene="wzzB" /locus_tag="STM2079" /note="putative RBS for wzzB; RegulonDB:STMS1H002228" gene complement(2157955..2159121) /gene="udg" /locus_tag="STM2080" /db_xref="GeneID:1253601" CDS complement(2157955..2159121) /gene="udg" /locus_tag="STM2080" /EC_number="1.1.1.22" /note="UDP-glucose 6-dehydrogenase. (SW:UDG_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-glucose/GDP-mannose dehydrogenase" /protein_id="NP_461025.1" /db_xref="GeneID:1253601" /translation="MKITISGTGYVGLSNGLLIAQHHDVVALDIVPSRVELLNDRISP IVDKEIQQFLKEDNIRFRATLDKFDAYQNADYVIIATPTDYDPKTNYFNTSSVESVMQ DVISINPAAVMIIKSTVPVGFTAAMRQKFATENIIFSPEFLREGKALYDNLYPSRIVI GEQSERAREFAALLQEGAIKQEIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYA ETLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYQSVPNNIISAI VEANRTRKDFIADAILARKPKVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVII YEPVMEEDTFFNSRLERDLHCFKQQADVIISNRMAAELLDVAEKVYTRDLFGSD" misc_feature complement(2157958..2159121) /gene="udg" /locus_tag="STM2080" /note="UDP-glucose 6-dehydrogenase; Provisional; Region: PRK15057" /db_xref="CDD:185017" gene complement(2159358..2160776) /gene="gnd" /locus_tag="STM2081" /db_xref="GeneID:1253602" CDS complement(2159358..2160764) /gene="gnd" /locus_tag="STM2081" /EC_number="1.1.1.44" /note="decarboxylating; 6-phosphogluconate dehydrogenase, decarboxylating. (SW:6PGD_SALTY)" /codon_start=1 /transl_table=11 /product="gluconate-6-phosphate dehydrogenase" /protein_id="NP_461026.1" /db_xref="GeneID:1253602" /translation="MSKQQIGVVGMAVMGRNLALNIESRGYTVSVFNRSREKTEEVIA ENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDSLKPYLEKGDIIIDGGN TFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGPSIMPGGQKDAYELVAPILTKIA AVAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLSNEELANT FTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP LSLITESVFARYISSLKAQRVAASKVLSGPKAQPAGDKAEFIEKVRRALYLGKIVSYA QGFSQLRAASDEYHWDLNYGEIAKIFRAGCIIRAQFLQKITDAYAENADIANLLLAPY FKKIADEYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSYRAAVLPANLIQAQRDYFGA HTYKRTDKEGIFHTEWLE" misc_feature complement(2159367..2160761) /gene="gnd" /locus_tag="STM2081" /note="6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]; Region: Gnd; COG0362" /db_xref="CDD:440131" regulatory complement(2160771..2160776) /regulatory_class="ribosome_binding_site" /gene="gnd" /locus_tag="STM2081" /note="putative RBS for gnd; RegulonDB:STMS1H002229" gene complement(2160928..2162365) /gene="rfbP" /locus_tag="STM2082" /db_xref="GeneID:1253603" CDS complement(2160928..2162358) /gene="rfbP" /locus_tag="STM2082" /note="bifunctional enzyme; LPS side chain defect; undecaprenyl-phosphate galactosephosphotransferase. (SW:RFBP_SALTY); undecaprenol-phosphate galactosephosphotransferase, and" /codon_start=1 /transl_table=11 /product="O-antigen transfer protein" /protein_id="NP_461027.1" /db_xref="GeneID:1253603" /translation="MDNIDNKYNPQLCKIFLAISDLIFFNLALWFSLGCVYFIFDQVQ RFIPQDQLDTRVITHFILSVVCVGWFWIRLRHYTYRKPFWYELKEIFRTIVIFAIFDL ALIAFTKWQFSRYVWVFCWTFALILVPFFRALTKHLLNKLGIWKKKTIILGSGQNARG AYSALQSEEMMGFDVIAFFDTDASDAEINMLPVIKDTEIIWDLNRTGDVHYILAYEYT ELEKTHFWLRELSKHHCRSVTVVPSFRGLPLYNTDMSFIFSHEVMLLRIQNNLAKRSS RFLKRTFDIVCSIMILIIASPLMIYLWYKVTRDGGPAIYGHQRVGRHGKLFPCYKFRS MVMNSQEVLKELLANDPIARAEWEKDFKLKNDPRITAVGRFIRKTSLDELPQLFNVLK GDMSLVGPRPIVSDELERYCDDVDYYLMAKPGMTGLWQVSGRNDVDYDTRVYFDSWYV KNWTLWNDIAILFKTAKVVLRRDGAY" misc_feature complement(2160931..2162358) /gene="rfbP" /locus_tag="STM2082" /note="undecaprenyl-phosphate galactose phosphotransferase; Provisional; Region: PRK15204" /db_xref="CDD:185126" regulatory complement(2162360..2162365) /regulatory_class="ribosome_binding_site" /gene="rfbP" /locus_tag="STM2082" /note="putative RBS for rfbP; RegulonDB:STMS1H002230" gene complement(2162430..2163870) /gene="rfbK" /locus_tag="STM2083" /db_xref="GeneID:1253604" CDS complement(2162430..2163863) /gene="rfbK" /locus_tag="STM2083" /EC_number="5.4.2.8" /EC_number="1.1.1.44" /note="LPS side chain defect: phosphomannomutase. (SW:RFBK_SALTY)" /codon_start=1 /transl_table=11 /product="phosphomannomutase" /protein_id="NP_461028.1" /db_xref="GeneID:1253604" /translation="MNVVNNSRDVIYSSGIVFGTSGARGLVKDFTPQVCAAFTVSFVA VMQEHFSFDTVALAIDNRPSSYGMAQACAAALADKGVNCIFYGVVPTPALAFQSMSDN MPAIMVTGSHIPFERNGLKFYRPDGEITKHDEAAILSVEDTCSHLELKELIVSEMAAV NYISRYTSLFSTPFLKNKRIGIYEHSSAGRDLYKPLFIALGAEVVSLGRSDNFVPIDT EAVSKEDREKARSWAKEFDLDAIFSTDGDGDRPLIADEAGEWLRGDILGLLCSLALDA EAVAIPVSCNSIISSGRFFKHVKLTKIGSPYVIEAFNELSRSYSRIVGFEANGGFLLG SDICINEQNLHALPTRDAVLPAIMLLYKSRNTSISALVNELPTRYTHSDRLQGITTDK SQSLISMGRENLSNLLSYIGLENEGAISTDMTDGMRITLRDGCIVHLRASGNAPELRC YAEANLLNRAQDLVNTTLANIKKRCLL" misc_feature complement(2162460..2163812) /gene="rfbK" /locus_tag="STM2083" /note="ManB is a bacterial phosphomannomutase (PMM) that catalyzes the conversion of mannose 6-phosphate to mannose-1-phosphate in the second of three steps in the GDP-mannose pathway, in which GDP-D-mannose is synthesized from fructose-6-phosphate. In...; Region: ManB; cd03088" /db_xref="CDD:100090" misc_feature complement(order(2162517..2162519,2162532..2162540, 2162544..2162546,2162874..2162876,2162880..2162882, 2162886..2162888,2162949..2162957,2163012..2163014, 2163114..2163119,2163123..2163125,2163129..2163131, 2163501..2163503,2163525..2163533,2163792..2163794, 2163801..2163803,2163807..2163809)) /gene="rfbK" /locus_tag="STM2083" /note="active site" /db_xref="CDD:100090" misc_feature complement(order(2162517..2162519,2162532..2162540, 2162544..2162546,2162874..2162876,2162880..2162882, 2162886..2162888,2162949..2162951,2162955..2162957, 2163012..2163014,2163114..2163116,2163531..2163533, 2163801..2163803)) /gene="rfbK" /locus_tag="STM2083" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100090" misc_feature complement(order(2163117..2163119,2163123..2163125, 2163129..2163131,2163531..2163533)) /gene="rfbK" /locus_tag="STM2083" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:100090" gene complement(2163850..2165292) /gene="rfbM" /locus_tag="STM2084" /db_xref="GeneID:1253605" CDS complement(2163850..2165289) /gene="rfbM" /locus_tag="STM2084" /EC_number="2.7.7.22" /EC_number="1.1.1.44" /note="LPS side chain defect: mannose-1-phosphate guanylyltransferase GDP). (SW:RFBM_SALTY)" /codon_start=1 /transl_table=11 /product="mannose-1-phosphate guanylyltransferase" /protein_id="NP_461029.1" /db_xref="GeneID:1253605" /translation="MSFLPVIMAGGTGSRLWPLSREYHPKQFLSVEGKLSMLQNTIKR LASLSTEEPVVICNDRHRFLVAEQLREIDKLANNIILEPVGRNTAPAIALAAFCALQN ADNADPLLLVLAADHVIQDEIAFTKAVRHAEEYAANGKLVTFGIVPTHAETGYGYIRR GELIGNDAYAVAEFVEKPDIDTAGDYFKSGKYYWNSGMFLFRASSYLNELKYLSPEIY KACEKAVGHINPDLDFIRIDKEEFMSCPSDSIDYAVMEHTQHAVVIPMSAGWSDVGSW SSLWDISNKDHQRNVLKGDIFAHACNDNYIYSEDMFISAIGVSNLVIVQTTDALLVAN KDTVQDVKKIVDYLKRNDRNEYKQHQEVFRPWGKYNVIDSGKNYLVRCITVKPGEKFV AQMHHHRAEHWIVLSGTARVTKGEQTYMVSENESTFIPPNTIHALENPGMTPLKLIEI QSGTYLGEDDIIRLEQRSGFSKEWTNERS" misc_feature complement(2163880..2165283) /gene="rfbM" /locus_tag="STM2084" /note="mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Region: GMP_PMI; TIGR01479" /db_xref="CDD:273648" misc_feature complement(order(2164942..2164944,2165260..2165262, 2165266..2165268)) /gene="rfbM" /locus_tag="STM2084" /note="Substrate binding site [active]" /db_xref="CDD:133003" regulatory complement(2163865..2163870) /regulatory_class="ribosome_binding_site" /gene="rfbK" /locus_tag="STM2083" /note="putative RBS for rfbK; RegulonDB:STMS1H002231" regulatory complement(2165287..2165292) /regulatory_class="ribosome_binding_site" /gene="rfbM" /locus_tag="STM2084" /note="putative RBS for rfbM; RegulonDB:STMS1H002232" gene complement(2165290..2166240) /gene="rfbN" /locus_tag="STM2085" /db_xref="GeneID:1253606" CDS complement(2165290..2166234) /gene="rfbN" /locus_tag="STM2085" /note="LPS side chain defect: putative rhamnosyltransferase RFBN. (SW:RFBN_SALTY)" /codon_start=1 /transl_table=11 /product="rhamnosyl transferase" /protein_id="NP_461030.1" /db_xref="GeneID:1253606" /translation="MKITLIIPTYNAGSLWPNVLDAIKQQTIYPDKLIVIDSGSKDET VPLASDLKNISIFNIDSKDFNHGGTRNLAVAKTLDADVIIFLTQDAILADSDAIKNLV YYFSDPLIAAVCGRQLPHKDANPLAVHARNFNYSSKSIVKSKADIEKLGIKTVFMSNS FAAYRRSVFEELSGFPEHTILAEDMFMAAKMIQAGYKVAYCAEAVVRHSHNYTPREEF QRYFDTGVFHACSPWIQRDFGGAGGEGFRFVKSEIQFLLKNAPFWIPRALLTTFAKFL GYKLGKHWQSLPLSTCRYFSMYKSYWNNIQYSSSKEIK" misc_feature complement(2165569..2166234) /gene="rfbN" /locus_tag="STM2085" /note="Glycosyltransferase, GT2 family [Carbohydrate transport and metabolism]; Region: WcaE; COG1216" /db_xref="CDD:440829" gene complement(2166235..2167302) /gene="rfbU" /locus_tag="STM2086" /db_xref="GeneID:1253607" CDS complement(2166235..2167296) /gene="rfbU" /locus_tag="STM2086" /note="LPS side chain defect; RFBU protein. (SW:RFBU_SALTY)" /codon_start=1 /transl_table=11 /product="mannosyl transferase" /protein_id="NP_461031.1" /db_xref="GeneID:1253607" /translation="MIVNLSRLGKSGTGMWQYSIKFLTALREIADVDAIICSKVHADY FEKLGYAVVTVPNIVSNTSKTSRLRPLVWYVYSYWLALRVLIKFGNKKLVCTTHHTIP LLRNQTITVHDIRPFYYPDSFIQKVYFRFLLKMSVKRCKHVLTVSYTVKDSIAKTYNV DSEKISVIYNSVNKSDFIQKKEKENYFLAVGASWPHKNIHSFIKNKKVWSDSYNLIIV CGRTDYAMSLQQMVVDLELKDKVTFLHEVSFNELKILYSKAYALVYPSIDEGFGIPPI EAMASNTPVIVSDIPVFHEVLTNGALYVNPDDEKSWQSAIKNIEQLPDAISRFNNYVA RYDFDNMKQMVGNWLAESK" misc_feature complement(2166262..2167293) /gene="rfbU" /locus_tag="STM2086" /note="glycosyltransferases MtfB, WbpX, and similar proteins; Region: GT4_MtfB-like; cd03809" /db_xref="CDD:340838" regulatory complement(2166235..2166240) /regulatory_class="ribosome_binding_site" /gene="rfbN" /locus_tag="STM2085" /note="putative RBS for rfbN; RegulonDB:STMS1H002233" regulatory complement(2167297..2167302) /regulatory_class="ribosome_binding_site" /gene="rfbU" /locus_tag="STM2086" /note="putative RBS for rfbU; RegulonDB:STMS1H002234" gene complement(2167616..2168622) /gene="rfbV" /locus_tag="STM2087" /db_xref="GeneID:1253608" CDS complement(2167616..2168617) /gene="rfbV" /locus_tag="STM2087" /note="LPS side chain defect; RFBV protein. (SW:RFBV_SALTY)" /codon_start=1 /transl_table=11 /product="abequosyltransferase" /protein_id="NP_461032.1" /db_xref="GeneID:1253608" /translation="MLISFCIPTYNRKEYLEELLNSINNQEKFNLDIEICISDNASTD GTEEMIDVWRNNYNFPIIYRRNSVNLGPDRNFLASVSLANGDYCWIFGSDDALAKDSL AILQTYLDSQADIYLCDRKETGCDLVEIRNPHRSWLRTDDELYVFNNNLDREIYLSRC LSIGGVFSYLSSLIVKKERWDAIDFDASYIGTSYPHVFIMMSVFNTPGCLLHYISKPL VICRGDNDSFEKKGKARRILIDFIAYLKLANDFYSKNISLKRAFENVLLKERPWLYTT LAMACYGNSDEKRDLSEFYAKLGCNKNMINTVLRFGKLAYAVKNITVLKNFTKRIIK" misc_feature complement(<2168204..2168608) /gene="rfbV" /locus_tag="STM2087" /note="Glycosyl transferase family 2; Region: Glycos_transf_2; pfam00535" /db_xref="CDD:425738" misc_feature complement(order(2168336..2168338,2168504..2168506, 2168588..2168590,2168594..2168596)) /gene="rfbV" /locus_tag="STM2087" /note="active site" /db_xref="CDD:132997" regulatory complement(2168617..2168622) /regulatory_class="ribosome_binding_site" /gene="rfbV" /locus_tag="STM2087" /note="putative RBS for rfbV; RegulonDB:STMS1H002235" gene complement(2168622..2169914) /gene="rfbX" /locus_tag="STM2088" /db_xref="GeneID:1253609" CDS complement(2168622..2169914) /gene="rfbX" /locus_tag="STM2088" /note="LPS side chain defect; putative O-antigen transporter. (SW:RFBX_SALTY)" /codon_start=1 /transl_table=11 /product="putative O-antigen transferase" /protein_id="NP_461033.1" /db_xref="GeneID:1253609" /translation="MKVQLLKIPSHLIVAGSSWLSKIIIAGVQLASISYLISMLGEEK YAIFSLLTGLLVWCSAVDFGIGTGLQNYISECRAKNKSYDAYIKSALHLSFIAIIFFI ALFYIFSGVISAKYLSSFHEVLQDKTRMLFFTSCLVFSSIGIGAIAYKILFAELVGWK ANLLNALSYMIGMLGLLYIYYRGISVDIKLSLIVLYLPVGMISLCYIVYRYIKLYHVK TTKSHYIAILRRSSGFFLFTLLSIVVLQTDYMVISQRLTPADIVQYTVTMKIFGLVFF IYTAILQALWPICAELRVKQQWKKLNKMIGVNILLGSLYVVGCTIFIYLFKEQIFSVI AKDINYQVSILSFMLIGIYFCIRVWCDTYAMLLQSMNYLKILWILVPLQAIIGGIAQW YFSSTLGISGVLLGLIISFALTVFWGLPLTYLIKANKG" misc_feature complement(2168646..2169872) /gene="rfbX" /locus_tag="STM2088" /note="Multidrug and toxic compound extrusion family and similar proteins; Region: MATE_like; cd12082" /db_xref="CDD:240527" gene complement(2169996..2170901) /gene="rfbJ" /locus_tag="STM2089" /db_xref="GeneID:1253610" CDS complement(2169996..2170895) /gene="rfbJ" /locus_tag="STM2089" /note="LPS side chain defect; CDP-abequose synthase. (SW:RFBJ_SALTY)" /codon_start=1 /transl_table=11 /product="CDP-abequose synthase" /protein_id="NP_461034.1" /db_xref="GeneID:1253610" /translation="MTFLKEYVIVSGASGFIGKHLLEALKKSGISVVAITRDVIKNNS NALANVRWCSWDNIELLVEELSIDSALIGIIHLATEYGHKTSSLINIEDANVIKPLKL LDLAIKYRADIFLNTDSFFAKKDFNYQHMRPYIITKRHFDEIGHYYANMHDISFVNMR LEHVYGPGDGENKFIPYIIDCLNKKQSCVKCTTGEQIRDFIFVDDVVNAYLTILENRK EVPSYTEYQVGTGAGVSLKDFLVYLQNTMMPGSSSIFEFGAIEQRDNEIMFSVANNKN LKAMGWKPNFDYKKGIEELLKRL" misc_feature complement(2170233..2170874) /gene="rfbJ" /locus_tag="STM2089" /note="NAD dependent epimerase/dehydratase family; Region: Epimerase; pfam01370" /db_xref="CDD:396097" regulatory complement(2170896..2170901) /regulatory_class="ribosome_binding_site" /gene="rfbJ" /locus_tag="STM2089" /note="putative RBS for rfbJ; RegulonDB:STMS1H002236" gene complement(2170923..2172243) /gene="rfbH" /locus_tag="STM2090" /db_xref="GeneID:1253611" CDS complement(2170923..2172236) /gene="rfbH" /locus_tag="STM2090" /note="LPS side chain defect; lipopolysaccharide biosynthesis protein RFBH. (SW:RFBH_SALTY)" /codon_start=1 /transl_table=11 /product="CDP-6deoxy-D-xylo-4-hexulose-3-dehydrase" /protein_id="NP_461035.1" /db_xref="GeneID:1253611" /translation="MTANNLREQISQLVAQYANEALSPKPFVAGTSVVPPSGKVIGAK ELQLMVEASLDGWLTTGRFNDAFEKKLGEFIGVPHVLTTTSGSSANLLALTALTSPKL GERALKPGDEVITVAAGFPTTVNPAIQNGLIPVFVDVDIPTYNIDASLIEAAVTEKSK AIMIAHTLGNAFNLSEVRRIADKYNLWLIEDCCDALGTTYEGQMVGTFGDIGTVSFYP AHHITMGEGGAVFTKSGELKKIIESFRDWGRDCYCAPGCDNTCGKRFGQQLGSLPQGY DHKYTYSHLGYNLKITDMQAACGLAQLERVEEFVEQRKANFSYLKQGLQSCTEFLELP EATEKSDPSWFGFPITLKETSGVNRVELVKFLDEAKIGTRLLFAGNLIRQPYFANVKY RVVGELTNTDRIMNQTFWIGIYPGLTTEHLDYVVSKFEEFFGLNF" misc_feature complement(2170926..2172236) /gene="rfbH" /locus_tag="STM2090" /note="lipopolysaccharide biosynthesis protein RfbH; Provisional; Region: PRK15407" /db_xref="CDD:237960" regulatory complement(2172238..2172243) /regulatory_class="ribosome_binding_site" /gene="rfbH" /locus_tag="STM2090" /note="putative RBS for rfbH; RegulonDB:STMS1H002237" gene complement(2172263..2173347) /gene="rfbG" /locus_tag="STM2091" /db_xref="GeneID:1253612" CDS complement(2172263..2173342) /gene="rfbG" /locus_tag="STM2091" /EC_number="4.2.1.45" /EC_number="1.1.1.44" /note="LPS side chain defect; CDP-glucose 4,6-dehydratase. (SW:RFBG_SALTY)" /codon_start=1 /transl_table=11 /product="CDP-glucose 4,6-dehydratase" /protein_id="NP_461036.1" /db_xref="GeneID:1253612" /translation="MIDKNFWQGKRVFVTGHTGFKGSWLSLWLTEMGAIVKGYALDAP TVPSLFEIVRLNDLMESHIGDIRDFEKLRNSIAEFKPEIVFHMAAQPLVRLSYEQPIE TYSTNVMGTVHLLETVKQVGNIKAVVNITSDKCYDNREWVWGYRENEPMGGYDPYSNS KGCAELVASAFRNSFFNPANYEQHGVGLASVRAGNVIGGGDWAKDRLIPDILRSFENN QQVIIRNPYSIRPWQHVLEPLSGYIVVAQRLYTEGAKFSEGWNFGPRDEDAKTVEFIV DKMVTLWGDDASWLLDGENHPHEAHYLKLDCSKANMQLGWHPRWGLTETLGRIVKWHK AWIRGEDMLICSKREISDYMSATTR" misc_feature complement(2172281..2173327) /gene="rfbG" /locus_tag="STM2091" /note="CDP-glucose 4,6-dehydratase; Region: CDP_4_6_dhtase; TIGR02622" /db_xref="CDD:274236" regulatory complement(2173342..2173347) /regulatory_class="ribosome_binding_site" /gene="rfbG" /locus_tag="STM2091" /note="putative RBS for rfbG; RegulonDB:STMS1H002238" gene complement(2173347..2174127) /gene="rfbF" /locus_tag="STM2092" /db_xref="GeneID:1253613" CDS complement(2173347..2174120) /gene="rfbF" /locus_tag="STM2092" /EC_number="2.7.7.33" /EC_number="1.1.1.44" /note="LPS side chain defect; glucose-1-phosphate cytidylyltransferase. (SW:RFBF_SALTY)" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate cytidylyltransferase" /protein_id="NP_461037.1" /db_xref="GeneID:1253613" /translation="MKAVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHIMKMYSVH GIKDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAENRMEVHHKRVEPWNVTLVDTGD SSMTGGRLKRVAEYVKDDEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATFPPGR FGALDIRAGQVRSFQEKPKGDGAMINGGFFVLNPSVIDLIDNDATTWEQEPLMTLAQQ GELMAFEHPGFWQPMDTLRDKVYLEGLWEKGKAPWKTWE" misc_feature complement(2173353..2174117) /gene="rfbF" /locus_tag="STM2092" /note="glucose-1-phosphate cytidylyltransferase; Region: G1P_cyt_trans; TIGR02623" /db_xref="CDD:131672" misc_feature complement(order(2173419..2173421,2173497..2173499, 2173563..2173565,2173734..2173742,2173794..2173796, 2173809..2173811,2174049..2174054,2174094..2174105)) /gene="rfbF" /locus_tag="STM2092" /note="substrate binding site [active]" /db_xref="CDD:133015" gene complement(2174117..2175109) /gene="rfbI" /locus_tag="STM2093" /db_xref="GeneID:1253614" CDS complement(2174117..2175109) /gene="rfbI" /locus_tag="STM2093" /note="LPS side chain defect; RFBI protein. (SW:RFBI_SALTY)" /codon_start=1 /transl_table=11 /product="CDP-6-deoxy-delta3,4-glucoseen reductase" /protein_id="NP_461038.1" /db_xref="GeneID:1253614" /translation="MSHIIKIFPSNIEFSGREDESILDAALSAGIHLEHSCKAGDCGI CESDLLAGEVVDSKGNIFGQGDKILTCCCKPKTALELNAHFFPELAGQTKKIVPCKVN SAVLVSGDVMTLKLRTPPTAKIGFLPGQYINLHYKGVTRSYSIANSDESNGIELHVRN VPNGQMSSLIFGELQENTLMRIEGPCGTFFIRESDRPIIFLAGGTGFAPVKSMVEHLI QGKCRREIYIYWGMQYSKDFYSALPQQWSEQHDNVHYIPVVSGDDAEWGGRKGFVHHA VMDDFDSLEFFDIYACGSPVMIDASKKDFMMKNLSVEHFYSDAFTASNNIEDNL" misc_feature complement(2174141..2175109) /gene="rfbI" /locus_tag="STM2093" /note="CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated; Region: PRK07609" /db_xref="CDD:181058" regulatory complement(2174122..2174127) /regulatory_class="ribosome_binding_site" /gene="rfbF" /locus_tag="STM2092" /note="putative RBS for rfbF; RegulonDB:STMS1H002239" gene complement(2175115..2175677) /gene="rfbC" /locus_tag="STM2094" /db_xref="GeneID:1253615" CDS complement(2175115..2175666) /gene="rfbC" /locus_tag="STM2094" /EC_number="5.1.3.13" /note="dTDP-4-dehydrorhamnose 3,5-epimerase. (SW:RFBC_SALTY)" /codon_start=1 /transl_table=11 /product="dTDP-4,deoxyrhamnose 3,5 epimerase" /protein_id="NP_461039.1" /db_xref="GeneID:1253615" /translation="MMIVIKTAIPDVLILEPKVFGDERGFFFESYNQQTFEELIGRKV TFVQDNHSKSKKNVLRGLHFQRGENAQGKLVRCAVGEVFDVAVDIRKESPTFGQWVGV NLSAENKRQLWIPEGFAHGFVTLSEYAEFLYKATNYYSPSSEGSILWNDEAIGIEWPF SQLPELSAKDAAAPLLDQALLTE" misc_feature complement(2175130..2175663) /gene="rfbC" /locus_tag="STM2094" /note="dTDP-4-dehydrorhamnose 3,5-epimerase or related enzyme [Cell wall/membrane/envelope biogenesis]; Region: RfbC; COG1898" /db_xref="CDD:441502" gene complement(2175667..2176551) /gene="rfbA" /locus_tag="STM2095" /db_xref="GeneID:1253616" CDS complement(2175667..2176545) /gene="rfbA" /locus_tag="STM2095" /EC_number="2.7.7.24" /note="glucose-1-phosphate thymidylyltransferase. (SW:RFBA_SALTY)" /codon_start=1 /transl_table=11 /product="dTDP-glucose pyrophosphorylase" /protein_id="NP_461040.1" /db_xref="GeneID:1253616" /translation="MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDKPMIYYPLSTL MLAGIRDILIISTPQDTPRFQQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGH DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVNDPERYGVVEFDQKGTAVSL EEKPLQPKSNYAVTGLYFYDNSVVEMAKNLKPSARGELEITDINRIYMEQGRLSVAMM GRGYAWLDTGTHQSLIEASNFIATIEERQGLKVSCPEEIAFRKNFINAQQVIELAGPL SKNDYGKYLLKMVKGL" misc_feature complement(2175670..2176545) /gene="rfbA" /locus_tag="STM2095" /note="glucose-1-phosphate thymidylyltransferase RfbA; Provisional; Region: PRK15480" /db_xref="CDD:185377" misc_feature complement(order(2175943..2175945,2176027..2176029, 2176057..2176062,2176105..2176107,2176213..2176215, 2176279..2176290,2176297..2176299,2176510..2176515, 2176519..2176521)) /gene="rfbA" /locus_tag="STM2095" /note="substrate binding site [active]" /db_xref="CDD:133019" misc_feature complement(order(2175817..2175822,2175829..2175837, 2175844..2175846,2175853..2175858,2175868..2175876, 2176108..2176113,2176123..2176134,2176198..2176203, 2176357..2176359,2176432..2176434,2176441..2176452, 2176456..2176464,2176474..2176479,2176486..2176494, 2176501..2176503)) /gene="rfbA" /locus_tag="STM2095" /note="tetramer interface [active]" /db_xref="CDD:133019" regulatory complement(2175672..2175677) /regulatory_class="ribosome_binding_site" /gene="rfbC" /locus_tag="STM2094" /note="putative RBS for rfbC; RegulonDB:STMS1H002240" regulatory complement(2176546..2176551) /regulatory_class="ribosome_binding_site" /gene="rfbA" /locus_tag="STM2095" /note="putative RBS for rfbA; RegulonDB:STMS1H002241" gene complement(2176593..2177505) /gene="rfbD" /locus_tag="STM2096" /db_xref="GeneID:1253617" CDS complement(2176593..2177492) /gene="rfbD" /locus_tag="STM2096" /EC_number="1.1.1.133" /note="DTDP-4-dehydrorhamnose reductase. (SW:RFBD_SALTY)" /codon_start=1 /transl_table=11 /product="TDP-rhamnose synthetase" /protein_id="NP_461041.1" /db_xref="GeneID:1253617" /translation="MNILLFGKTGQVGWELQRSLAPVGNLIALDVHSKEFCGDFSNPK GVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVEAIAKAANETGAWVVHY STDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDNCPKHLIFRTSWVYAGKGN NFAKTMLRLAKERQTLSVINDQYGAPTGAELLADCTAHAIRVALNKPEVAGLYHLVAG GTTTWHDYAALVFDEARKAGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFD LILPQWELGVKRMLTEMFTTTTI" misc_feature complement(2176596..2177492) /gene="rfbD" /locus_tag="STM2096" /note="dTDP-4-dehydrorhamnose reductase; Provisional; Region: PRK09987" /db_xref="CDD:182184" misc_feature complement(order(2177031..2177042,2177097..2177099, 2177109..2177111,2177181..2177189,2177253..2177255, 2177298..2177300,2177304..2177312,2177370..2177381, 2177400..2177405,2177457..2177468,2177472..2177474)) /gene="rfbD" /locus_tag="STM2096" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187564" misc_feature complement(order(2177097..2177099,2177109..2177111, 2177181..2177183,2177250..2177252)) /gene="rfbD" /locus_tag="STM2096" /note="active site" /db_xref="CDD:187564" misc_feature complement(order(2176941..2176943,2176959..2176961, 2176995..2176997,2177034..2177036,2177109..2177111, 2177181..2177183)) /gene="rfbD" /locus_tag="STM2096" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187564" gene complement(2177492..2178590) /gene="rfbB" /locus_tag="STM2097" /db_xref="GeneID:1253618" CDS complement(2177492..2178577) /gene="rfbB" /locus_tag="STM2097" /EC_number="4.2.1.46" /note="DTDP-glucose 4,6-dehydratase. (SW:RFBB_SALTY)" /codon_start=1 /transl_table=11 /product="dTDP-glucose 4,6 dehydratase" /protein_id="NP_461042.1" /db_xref="GeneID:1253618" /translation="MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNLESLS DISESNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFIETNIV GTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTA YAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFPEKLIPLVILNALEG KPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHNEKKNLDVVFTICDL LDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWY LANTQWVNNVKSGAYQSWIEQNYEGRQ" misc_feature complement(2177522..2178577) /gene="rfbB" /locus_tag="STM2097" /note="dTDP-glucose 4,6 dehydratase; Provisional; Region: PRK10084" /db_xref="CDD:236649" misc_feature complement(order(2177987..2177998,2178065..2178067, 2178077..2178079,2178179..2178187,2178281..2178283, 2178326..2178328,2178332..2178340,2178401..2178409, 2178464..2178469,2178473..2178484,2178542..2178553, 2178557..2178559)) /gene="rfbB" /locus_tag="STM2097" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:187557" misc_feature complement(order(2177666..2177668,2177678..2177680, 2177687..2177689,2177780..2177782,2177885..2177887, 2177891..2177893,2177906..2177914,2177945..2177950, 2177957..2177965,2177990..2177998,2178077..2178079, 2178173..2178181,2178320..2178328)) /gene="rfbB" /locus_tag="STM2097" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187557" misc_feature complement(order(2177675..2177677,2178023..2178031, 2178035..2178040,2178047..2178052,2178059..2178064, 2178071..2178073,2178080..2178091,2178095..2178100, 2178104..2178106,2178161..2178163,2178242..2178244, 2178251..2178253,2178263..2178265,2178272..2178277, 2178287..2178289,2178296..2178301,2178308..2178310, 2178314..2178316)) /gene="rfbB" /locus_tag="STM2097" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187557" misc_feature complement(order(2178065..2178067,2178077..2178079, 2178179..2178181,2178278..2178280)) /gene="rfbB" /locus_tag="STM2097" /note="active site" /db_xref="CDD:187557" regulatory complement(2177500..2177505) /regulatory_class="ribosome_binding_site" /gene="rfbD" /locus_tag="STM2096" /note="putative RBS for rfbD; RegulonDB:STMS1H002242" regulatory complement(2178585..2178590) /regulatory_class="ribosome_binding_site" /gene="rfbB" /locus_tag="STM2097" /note="putative RBS for rfbB; RegulonDB:STMS1H002243" gene complement(2178954..2179862) /gene="galF" /locus_tag="STM2098" /db_xref="GeneID:1253619" CDS complement(2178954..2179847) /gene="galF" /locus_tag="STM2098" /EC_number="2.7.7.9" /note="UTP--glucose-1-phosphate uridylyltransferase. (SW:GALF_SALTY); putative glucose-1-phosphate uridylyltransferase, non-catalytic subunit" /codon_start=1 /transl_table=11 /product="UDP-glucose pyrophosphorylase" /protein_id="NP_461043.1" /db_xref="GeneID:1253619" /translation="MMNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDKPMIQYIVDEI VAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPPGVTIMNV RQAQPLGLGHSILCARPVVGDNPFIVVLPDIIIDDATADPLRYNLAAMVARFNETGRS QVLAKRMKGDLSEYSVIQTKEPLDNEGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLS ADIWAELERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY GLRNLKEGAKFRKSIEQLLHE" misc_feature complement(2178957..2179847) /gene="galF" /locus_tag="STM2098" /note="UTP--glucose-1-phosphate uridylyltransferase GalF; Region: PRK10122" /db_xref="CDD:182252" regulatory complement(2179857..2179862) /regulatory_class="ribosome_binding_site" /gene="galF" /locus_tag="STM2098" /note="putative RBS for galF; RegulonDB:STMS1H002244" gene complement(2180025..2181436) /gene="wcaM" /locus_tag="STM2099" /db_xref="GeneID:1253620" CDS complement(2180025..2181428) /gene="wcaM" /locus_tag="STM2099" /note="colanic acid biosynthesis protein WCAM. (SW:WCAM_SALTY)" /codon_start=1 /transl_table=11 /product="putative colanic acid biosynthesis protein" /protein_id="NP_461044.1" /db_xref="GeneID:1253620" /translation="MPATKFSRRTLLTAGSALAVLPFLRALPVQAREPRETVDIKDYP ADDGIASFKQAFADGQTVVVPPGWVCENINAAITIPAGKTLRVQGAVRGNGRGRFILQ DGCQVVGEQGGSLHNVTLDVRGSDCVIKGVAMSGFGPVAQIFIGGKEPQVMRNLIIDD ITVTHANYAILRQGFHNQMDGARITHSRFSDLQGDAIEWNVAIHDRDILISDHVIERI NCTNGKINWGIGIGLAGSTYDNSYPEDQAVKNFVVANITGSDCRQLVHVENGKHFVIR NVKAKNITPGFSKNAGIDNATIAIYGCDNFVIDNIDMTNSAGMLIGYGVVKGKYLSIP QNFKLNAIRLDNRQVAYKLRGIQISSGNTPSFVAITNVRMTRATLELHNQPQHLFLRN INVMQTSAIGPALKMHFDLRKDVRGQFMARQDTLLSLANVHAINENGQSSVDIDRINH QTVNVEAVNFSLPKRGG" misc_feature complement(2180034..2181425) /gene="wcaM" /locus_tag="STM2099" /note="colanic acid biosynthesis protein WcaM; Region: WcaM; TIGR04004" /db_xref="CDD:188519" regulatory complement(2181431..2181436) /regulatory_class="ribosome_binding_site" /gene="wcaM" /locus_tag="STM2099" /note="putative RBS for wcaM; RegulonDB:STMS1H002245" gene complement(2181439..2182667) /gene="wcaL" /locus_tag="STM2100" /db_xref="GeneID:1253621" CDS complement(2181439..2182659) /gene="wcaL" /locus_tag="STM2100" /note="in colanic acid gene cluster; putative colanic acid biosynthesis glycosyl transferase WCAL. (SW:WCAL_SALTY)" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_461045.1" /db_xref="GeneID:1253621" /translation="MKVSFFLLKFPLSSETFVLNQITAFIDMGHEVEIVALQKGDTQH THAAWEKYGLAAKTRWLQDEPQGRLAKLRYRACKTLPGLHRAATWKALNFTRYGDESR NLILSAICAQVSQPFVADVFIAHFGPAGVTAAKLRELGVLRGKIATIFHGIDISSREV LSHYTPEYQQLFRRGDLMLPISDLWAGRLKSMGCPPEKIAVSRMGVDMTRFTHRSVKA PGMPLEMISVARLTEKKGLHVAIEACRQLKAQGVAFRYRILGIGPWERRLRTLIEQYQ LEDVIEMPGFKPSHEVKAMLDDADVFLLPSITGTDGDMEGIPVALMEAMAVGIPVVST VHSGIPELVEAGKSGWLVPENDAQALAARLAEFSRIDHDTLESVITRAREKVAQDFNQ QAINRQLASLLQTI" misc_feature complement(2181442..2182659) /gene="wcaL" /locus_tag="STM2100" /note="colanic acid biosynthesis glycosyltransferase WcaL; Region: wcaL; TIGR04005" /db_xref="CDD:188520" gene complement(2182656..2183946) /gene="wcaK" /locus_tag="STM2101" /db_xref="GeneID:1253622" CDS complement(2182656..2183936) /gene="wcaK" /locus_tag="STM2101" /note="in colanic acid gene cluster; similar to E. coli putative galactokinase. (AAC75106.1); Blastp hit to AAC75106.1 (426 aa), 67% identity in aa 1 - 426" /codon_start=1 /transl_table=11 /product="putative galactokinase" /protein_id="NP_461046.1" /db_xref="GeneID:1253622" /translation="MKLLILGNHTCGNRGDSAIMRGLLDAIRQQAPEAEMDVMSRFPV SSAWLQGRPIIADPLYQLSQKQQAAAGLNGRVKKVLRRRFQHKILLSKVAQEGSLRNF AIAPEFAEFAQFIAQYDAVIQVGGSNYVDLYGLTHFEYPLCAFMANKPIYMVGHSVGP FQNPDFNQLANYVFGRTSALILRETVSRDLMTAAQIDTRKVEQGVDTAWLVERRHDEF VASYAVQHWLDVTARRKTVAITLRDLEPFDKRLGTTQQAYEQAFAQVVNRLIADGYQV LALSTCTSIDRYNRDDRMVALRMAKYVNDSENFHIAMDELNDVEIGKILASCVLTIGT RLHSAIISMNFGTPAIAINYEHKSAGIMQQLGLAELAIDIRHLLNGSLQSVVADTLNQ LPALKAKVANAVTEERAKGFTMIKSVLDRIREAQ" misc_feature complement(2182659..2183936) /gene="wcaK" /locus_tag="STM2101" /note="glycosyltransferase family 1 and related proteins with GTB topology; Region: Glycosyltransferase_GTB-type; cl10013" /db_xref="CDD:471961" regulatory complement(2182662..2182667) /regulatory_class="ribosome_binding_site" /gene="wcaL" /locus_tag="STM2100" /note="putative RBS for wcaL; RegulonDB:STMS1H002246" regulatory complement(2183941..2183946) /regulatory_class="ribosome_binding_site" /gene="wcaK" /locus_tag="STM2101" /note="putative RBS for wcaK; RegulonDB:STMS1H002247" gene complement(2183958..2185448) /gene="wzxC" /locus_tag="STM2102" /db_xref="GeneID:1253623" CDS complement(2183958..2185436) /gene="wzxC" /locus_tag="STM2102" /note="in colanic acid gene cluster; similar to E. coli probable export protein (AAC75107.1); Blastp hit to AAC75107.1 (492 aa), 85% identity in aa 1 - 492" /codon_start=1 /transl_table=11 /product="putative export protein" /protein_id="NP_461047.1" /db_xref="GeneID:1253623" /translation="MSLRQKTISGAKWSAIATIVIIGLGLIQMTVLARIIDNHQFGLL TVSLVIIALADTISDFGIANSIIQRKTIGHLELTTLYWLNVGLGIVVFAVVFWLSDAI AHVLHNPDLAPLIKTLSLAFIVIPHGQQFRALMQKELEFNKIGMIETTSVLAGFTFTV ISAHYWPLALTAILGYLVNSAVRTLLFGYFGRKIYRPGLHFSLASVSTNLRFGAWLTA DSIVNYINTNLSTLVLARILGASVAGGYNLAYNVAVVPPAKLNPIITRVLFPAFAKIQ DDTEKLRVNFYKLLSVVGIINFPALLGLMVVANNFVPLVFGEKWNSIIPILQLLCVVG LLRSVGNPIGSLLMAKARVDISFKFNVFKTFLFIPAILIGGHLAGAIGVTLGFLVVQI INTILSYFVMIKPVLGSSYRQYILSLWLPFYLSLPTFITSYGAGKLVDGYLPLSGVFA LQVMVGILSFILMIIFSRNALVMEIKNQLVGSAKMKKLLRVG" misc_feature complement(2183961..2185436) /gene="wzxC" /locus_tag="STM2102" /note="MOP flippase family protein; Region: PRK10459" /db_xref="CDD:236697" regulatory complement(2185443..2185448) /regulatory_class="ribosome_binding_site" /gene="wzxC" /locus_tag="STM2102" /note="putative RBS for wzxC; RegulonDB:STMS1H002248" gene complement(2185569..2186974) /gene="wcaJ" /locus_tag="STM2103" /db_xref="GeneID:1253624" CDS complement(2185569..2186963) /gene="wcaJ" /locus_tag="STM2103" /note="in colanic acid gene cluster; similar to E. coli putative colanic acid biosynthsis UDP-glucose lipid carrier transferase (AAC75108.1); Blastp hit to AAC75108.1 (464 aa), 89% identity in aa 1 - 464; putative UDP-glucose lipid carrier transferase" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate transferase" /protein_id="NP_461048.1" /db_xref="GeneID:1253624" /translation="MTNLKKRERAKTNASLISMVQRFSDITIMFGGLWFICEVSGLPF LYMHLLVALITLVVFQMLGGITDFYRSWRGVKMSTELTLLLQNWTLSLIFSAGLVAFN DDFDNRLATWLAWYALSSLGLVLCRSFIRFGAGWLRNRGYNTRRVAVAGDLPAGQALL DSFRNEPWLGFEVVGVYHDPKPGGVSADWAGNFEQLIDDAKASRIHNVYIAMSMSDGA MVKKLVRELADTTCSVILIPDVFTFNILHSRVEEMSGVPVVPLYDTPLSGINRLLKRA EDIVLASLILLLISPVLCCIALAVKLSSPGPVIFRQTRYGMDGKPIKVWKFRSMKVME NDKVVTQATQNDPRVTRVGNFLRRTSLDELPQFINVLTGGMSIVGPRPHAVAHNEQYR QLIEGYMLRHKMKPGITGWAQINGWRGETDTLEKMEKRVEFDLEYIREWSIWFDIKIV FLTIFKGFVNKAAY" misc_feature complement(2185572..2186960) /gene="wcaJ" /locus_tag="STM2103" /note="putative UDP-glucose lipid carrier transferase; Provisional; Region: PRK10124" /db_xref="CDD:182254" regulatory complement(2186969..2186974) /regulatory_class="ribosome_binding_site" /gene="wcaJ" /locus_tag="STM2103" /note="putative RBS for wcaJ; RegulonDB:STMS1H002249" gene complement(2187017..2188399) /gene="cpsG" /locus_tag="STM2104" /db_xref="GeneID:1253625" CDS complement(2187017..2188387) /gene="cpsG" /locus_tag="STM2104" /EC_number="5.4.2.8" /note="in colanic acid gene cluster; phosphomannomutase. (SW:MANB_SALTY)" /codon_start=1 /transl_table=11 /product="phosphomannomutase" /protein_id="NP_461049.1" /db_xref="GeneID:1253625" /translation="MTKLTCFKAYDIRGRLGEELNEDIAWRIGRAYGEYLKPKTVVLG GDVRLTSEALKLALAKGLQDAGVDVLDIGMSGTEEIYFATFHLGVDGGIEVTASHNPM DYNGMKLVREGARPISGDTGLRDVQRLAEAGDFPPVNEAARGSYRQISLRDAYIDHLL GYISVNNLTPLKLVFNAGNGAAGPVIDAIEARLKALGAPVEFIKIHNTPDGTFPNGIP NPLLPECRDDTRKAVIEHGADMGIAFDGDFDRCFLFDEKGQFIEGYYIVGLLAEAFLE KHPGAKIIHDPRLTWNTEAVVTAAGGTPVMSKTGHAFIKERMRTEDAIYGGEMSAHHY FRDFAYCDSGMIPWLLVAELVCLKRQSLGELVRDRMAAFPASGEINSRLAEPAAAIAR VEAHFAEEAQAVDRTDGLSMSFADWRFNLRSSNTEPVVRLNVESRGDIPLMEARTRTL LALLNQ" misc_feature complement(2187020..2188387) /gene="cpsG" /locus_tag="STM2104" /note="phosphomannomutase; Region: PRK15414" /db_xref="CDD:185312" misc_feature complement(order(2187110..2187118,2187122..2187124, 2187392..2187394,2187398..2187400,2187404..2187406, 2187455..2187463,2187524..2187526,2187638..2187643, 2187647..2187649,2187653..2187655,2188064..2188066, 2188088..2188096,2188349..2188351,2188358..2188360, 2188364..2188366)) /gene="cpsG" /locus_tag="STM2104" /note="active site" /db_xref="CDD:100091" misc_feature complement(order(2187110..2187118,2187122..2187124, 2187392..2187394,2187398..2187400,2187404..2187406, 2187455..2187457,2187461..2187463,2187524..2187526, 2187638..2187640,2188094..2188096,2188349..2188351, 2188358..2188360)) /gene="cpsG" /locus_tag="STM2104" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100091" misc_feature complement(order(2187641..2187643,2187647..2187649, 2187653..2187655,2188094..2188096)) /gene="cpsG" /locus_tag="STM2104" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:100091" regulatory complement(2188394..2188399) /regulatory_class="ribosome_binding_site" /gene="cpsG" /locus_tag="STM2104" /note="putative RBS for cpsG; RegulonDB:STMS1H002250" gene complement(2188498..2189946) /gene="manC" /locus_tag="STM2105" /db_xref="GeneID:1253626" CDS complement(2188498..2189940) /gene="manC" /locus_tag="STM2105" /EC_number="2.7.7.22" /note="in colanic acid gene cluster; mannose-1-phosphate guanylyltransferase (GDP). (SW:MANC_SALTY)" /codon_start=1 /transl_table=11 /product="mannose-1-phosphate" /protein_id="NP_461050.3" /db_xref="GeneID:1253626" /translation="MIMRQTKLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDLTMLQ TTICRLNGVECESPLVICNEQHRFIVAEQLRQLNKLTENIILEPAGRNTAPAIALAAL AATRQHTDCDPLMLVLAADHAIANEEAFRDAVRGAMPYADAGKLVTFGIVPDLPETGY GYIRRGDVVPGATDAVAFEVAQFVEKPGLETAQAYVASGDYYWNSGMFLFRAGRYLEE LKKFRPDILAACEQAMRGVDPDLDFIRVDEEAFLACPEESIDYAVMERTADAVVMPMD AGWSDVGSWSSLWEISAHTPEGNVHHGDVISHKTENSYVYAESGLVTTVGVKDLVVVQ TKDAVLIADRHAVQDVKKVVEKIKADGRHEHHMHREVYRPWGKYDSIDAGERYQVKRI TVKPGEGLSVQMHHHRAEHWVVVAGTARVTINGEVKLLGENESIYIPLGATHCLENPG KIPLDLIEVRSGSYLEEDDVVRFEDRYGRV" misc_feature complement(2188501..2189934) /gene="manC" /locus_tag="STM2105" /note="mannose-1-phosphate guanyltransferase; Provisional; Region: cpsB; PRK15460" /db_xref="CDD:185357" misc_feature complement(order(2189578..2189580,2189896..2189898, 2189902..2189904)) /gene="manC" /locus_tag="STM2105" /note="Substrate binding site [active]" /db_xref="CDD:133003" gene complement(2189937..2191171) /gene="wcaI" /locus_tag="STM2106" /db_xref="GeneID:1253627" CDS complement(2189937..2191160) /gene="wcaI" /locus_tag="STM2106" /note="in colanic acid gene cluster; similar to E. coli putative colanic biosynthesis glycosyl transferase (AAC75111.1); Blastp hit to AAC75111.1 (407 aa), 85% identity in aa 1 - 407" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_461051.1" /db_xref="GeneID:1253627" /translation="MKILVYGINYSPELTGIGKYTGEMVAWMAQEGHEVRVITAPPYY PQWKVGERYSAWRYRREEGEATVWRCPLYVPKQPSTLKRLLHLGSFALSSFFPLMAQR RWKPDRIIGVVPTLFCTPGMRLLATLSGARTVLHIQDYEVDAMLGLGMAGKGKRGSVA RLATAFERSALRNVDNVSTISRSMMNKAREKGVAAEKILFFPNWSEVARFQDVNDADV TALRQQLGLPEGKKIVLYSGNIGEKQGLEKVIDAAERLRDRPLIFAIVGQGGGKARLE NMARERGLANIKFLPLQPYDALPALLKMGDCHLVVQKRGAADAVLPSKLTNILAVGGN AVITAEPHTELGQLCARYPGIAVCVEPESTDALVNGISQALAMPKNNTTAREYAERTL NKENVLRQFIADIRG" misc_feature complement(2189940..2191160) /gene="wcaI" /locus_tag="STM2106" /note="colanic acid biosynthesis glycosyl transferase WcaI; Region: wcaI; TIGR04007" /db_xref="CDD:188522" regulatory complement(2189941..2189946) /regulatory_class="ribosome_binding_site" /gene="wcaI" /locus_tag="STM2106" /note="putative RBS for manC; RegulonDB:STMS1H002251" regulatory complement(2191166..2191171) /regulatory_class="ribosome_binding_site" /gene="wcaI" /locus_tag="STM2106" /note="putative RBS for wcaI; RegulonDB:STMS1H002252" gene complement(2191362..2191661) /gene="wcaH" /locus_tag="STM2107" /db_xref="GeneID:1253628" CDS complement(2191362..2191661) /gene="wcaH" /locus_tag="STM2107" /note="in colanic acid gene clustersimilar to E. coli GDP-mannose mannosyl hydrolase (AAC75112.1); Blastp hit to AAC75112.1 (160 aa), 78% identity in aa 15 - 149" /codon_start=1 /transl_table=11 /product="GDP-mannose mannosyl hydrolase" /protein_id="NP_461052.4" /db_xref="GeneID:1253628" /translation="MRISNGSGGDNVFTSGRFRRRGAGHAPHLPRFHRGKRPGGNFTG PASQPSGAGLLVCAGGAGVQRRNAGGRLCTPDAGGTGRASAAGGRDVLWRLAALL" gene complement(2191633..2192612) /gene="wcaG" /locus_tag="STM2108" /db_xref="GeneID:1253629" CDS complement(2191633..2192598) /gene="wcaG" /locus_tag="STM2108" /EC_number="1.-.-.-" /EC_number="5.-.-.-" /note="in colanic acid gene cluster; similar to E. coli putative nucleotide di-P-sugar epimerase or dehydratase (AAC75113.1); Blastp hit to AAC75113.1 (321 aa), 90% identity in aa 1 - 321" /codon_start=1 /transl_table=11 /product="bifunctional GDP fucose synthetase" /protein_id="NP_461053.1" /db_xref="GeneID:1253629" /translation="MNKQRIFVAGHRGMVGSAIVRQLAQRGDVELVLRTRDELDLLDG RAVQAFFAGAGIDQVYLAAAKVGGIVANNTYPADFIYENMMIESNIIHAAHLHNVNKL LFLGSSCIYPKLARQPMAESELLQGTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRS VMPTNLYGPHDNFHPDNSHVIPALLRRFHEAAQSHAPEVVVWGSGTPMREFLHVDDMA AASIHVMELAREVWQENTAPMLSHINVGTGVDCTIRELAQTIAKVVGYQGRVVFDAAK PDGTPRKLLDVTRLHQLGWYHEISLEAGLAGTYQWFLENQQRFRG" misc_feature complement(2191660..2192586) /gene="wcaG" /locus_tag="STM2108" /note="GDP-fucose synthetase, extended (e) SDRs; Region: GDP_FS_SDR_e; cd05239" /db_xref="CDD:187550" misc_feature complement(order(2192101..2192103,2192107..2192112, 2192179..2192181,2192191..2192193,2192278..2192286, 2192341..2192343,2192401..2192403,2192407..2192415, 2192473..2192484,2192491..2192493,2192554..2192565, 2192569..2192571)) /gene="wcaG" /locus_tag="STM2108" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187550" misc_feature complement(order(2192179..2192181,2192191..2192193, 2192278..2192280,2192350..2192352)) /gene="wcaG" /locus_tag="STM2108" /note="active site" /db_xref="CDD:187550" misc_feature complement(order(2191972..2191974,2191996..2191998, 2192047..2192049,2192104..2192106,2192191..2192193, 2192278..2192280)) /gene="wcaG" /locus_tag="STM2108" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187550" regulatory complement(2191664..2191669) /regulatory_class="ribosome_binding_site" /gene="wcaG" /locus_tag="STM2108" /note="putative RBS for wcaH; RegulonDB:STMS1H002253" gene complement(2192601..2193734) /gene="gmd" /locus_tag="STM2109" /db_xref="GeneID:1253630" CDS complement(2192601..2193722) /gene="gmd" /locus_tag="STM2109" /EC_number="4.2.1.47" /note="in colanic acid gene cluster; similar to E. coli GDP-D-mannose dehydratase (AAC75114.1); Blastp hit to AAC75114.1 (373 aa), 96% identity in aa 1 - 373" /codon_start=1 /transl_table=11 /product="GDP-D-mannose dehydratase" /protein_id="NP_461054.1" /db_xref="GeneID:1253630" /translation="MSKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV DHIYQDPHSCNPKFHLHYGDLTDASNLTRILQEVQPDEVYNLGAMSHVAVSFESPEYT ADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKETTPFYPRSPYAVA KLYAYWITVNYRESYGIYACNGILFNHESPRRGETFVTRKITRAIANIAQGLESCLYL GNMDSLRDWGHAKDYVRMQWMMLQQEQPEDFVIATGVQYSVRQFVELAAAQLGIKLRF EGEGINEKGIVVSVTGHDAPGVKPGDVIVAVDPRYFRPAEVETLLGDPSKAHEKLGWK PEITLSEMVSEMVANDLEAAKKHSLLKSHGYEVAIALES" misc_feature complement(2192658..2193716) /gene="gmd" /locus_tag="STM2109" /note="GDP-D-mannose dehydratase [Cell wall/membrane/envelope biogenesis]; Region: Gmd; COG1089" /db_xref="CDD:440706" regulatory complement(2192607..2192612) /regulatory_class="ribosome_binding_site" /gene="wcaG" /locus_tag="STM2108" /note="putative RBS for wcaG; RegulonDB:STMS1H002254" regulatory complement(2193729..2193734) /regulatory_class="ribosome_binding_site" /gene="gmd" /locus_tag="STM2109" /note="putative RBS for gmd; RegulonDB:STMS1H002255" gene complement(2193746..2194312) /gene="wcaF" /locus_tag="STM2110" /db_xref="GeneID:1253631" CDS complement(2193746..2194300) /gene="wcaF" /locus_tag="STM2110" /EC_number="2.3.1.-" /note="in colanic acid gene cluster; similar to E. coli putative transferase (AAC75115.1); Blastp hit to AAC75115.1 (182 aa), 87% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="putative acyltransferase" /protein_id="NP_461055.1" /db_xref="GeneID:1253631" /translation="MQDLSGFTVPKGFRGANALKVQLWWAVQATLFAGSPQILYRWRA FLLRLFGAKIGKNVVIRPSVKITYPWKLTVGDYAWVGDDAVLYTLGEINIGAHAVISQ KGYLCTGSHDYTSAHFDINAAPIVIGEKCWLATDVFVAPGVTIGHGTVVGARSSVFKS LPANAICRGNPAVVTRQRVQKVTP" misc_feature complement(2193761..2194300) /gene="wcaF" /locus_tag="STM2110" /note="Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes...; Region: LbetaH; cl00160" /db_xref="CDD:469633" misc_feature complement(order(2193791..2193793,2193839..2193841, 2193896..2193898,2193905..2193907,2193911..2193913, 2193962..2193970,2193986..2193988,2194004..2194006, 2194010..2194012,2194040..2194042,2194064..2194066, 2194070..2194072)) /gene="wcaF" /locus_tag="STM2110" /note="putative trimer interface [polypeptide binding]; other site" /db_xref="CDD:100063" misc_feature complement(order(2193788..2193790,2193794..2193799, 2193824..2193829,2193842..2193847,2193881..2193883, 2193896..2193901,2193905..2193907,2193962..2193964, 2193968..2193970,2194058..2194060,2194064..2194066)) /gene="wcaF" /locus_tag="STM2110" /note="putative active site [active]" /db_xref="CDD:100063" misc_feature complement(order(2193968..2193970,2194058..2194060, 2194064..2194066)) /gene="wcaF" /locus_tag="STM2110" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:100063" misc_feature complement(order(2193788..2193790,2193794..2193799, 2193803..2193805,2193824..2193829,2193842..2193847, 2193851..2193853,2193881..2193883,2193896..2193901, 2193905..2193907,2193962..2193964,2193968..2193970)) /gene="wcaF" /locus_tag="STM2110" /note="putative CoA binding site [chemical binding]; other site" /db_xref="CDD:100063" regulatory complement(2194307..2194312) /regulatory_class="ribosome_binding_site" /gene="wcaF" /locus_tag="STM2110" /note="putative RBS for wcaF; RegulonDB:STMS1H002256" gene complement(2194316..2195070) /gene="wcaE" /locus_tag="STM2111" /db_xref="GeneID:1253632" CDS complement(2194316..2195062) /gene="wcaE" /locus_tag="STM2111" /note="in colanic acid gene cluster; similar to E. coli putative colanic acid biosynthesis glycosyl transferase (AAC75116.1); Blastp hit to AAC75116.1 (248 aa), 71% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="putative transferase" /protein_id="NP_461056.1" /db_xref="GeneID:1253632" /translation="MFLSVVTVAFRNYEGVVKTWRSLRNLARDPGLSFEWIVVDGGSE DGTREFLRKRHGEFNLRFISEKDRGIYDAMNKGIALAQGRYTLFLNSGDAFHDDAALF VRQLARQKGEAMYIGDALLDFGGGHKIRRKAKPGYYIYHSLPASHQAIFFPTAALKKY PYDLQYHVSSDYALAARLYKAGYPFRRINGLVSEFSMGGVSTSNNLELCQDAKNVQRK ILRVPGFWAQLSYLLRLKTTGKTKARYNKV" misc_feature complement(2194319..2195062) /gene="wcaE" /locus_tag="STM2111" /note="colanic acid biosynthesis glycosyl transferase WcaE; Region: wcaE; TIGR04009" /db_xref="CDD:188524" regulatory complement(2195065..2195070) /regulatory_class="ribosome_binding_site" /gene="wcaE" /locus_tag="STM2111" /note="putative RBS for wcaE; RegulonDB:STMS1H002257" gene complement(2195075..2196296) /gene="wcaD" /locus_tag="STM2112" /db_xref="GeneID:1253633" CDS complement(2195075..2196289) /gene="wcaD" /locus_tag="STM2112" /note="similar to E. coli putative colanic acid polymerase (AAC75117.1); Blastp hit to AAC75117.1 (405 aa), 93% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="putative colanic acid polymerase" /protein_id="NP_461057.1" /db_xref="GeneID:1253633" /translation="MSRSIRICSYLLLPLIYLLVNVKIAQLGESFPITIVTFLPLLLL LFVERISVKKLMIALGIGAGLTAFNFLFGQSLNAGKYVTSTMLFVYIVVIIGMVWSIR FKTISAHNHRKILRFFYLVVGMVVALAAVEMAQIILTGGSSIMEGISKYLIYSNSYVL NFIKFGGKRTTALYFEPAFFALALISIWLSIKQFGIKTPKSDAMILAGIILSGSFSGV MTFILFYLLEWAFQYLNKDAIKKKLPLALVSLTLFLVGVIIAFPYIATRLGDLGTEGS SSYYRIVGPLVMVGYSLTHIDGVVRFGSLYEYVASFGIFNGADVGKTIDNGLYLLIIY FSWFAVLMTLWYMGKVLKMALNAFGDNRNFRVQLYLFTPVSLFFTGSIFSPEYAFLIV CPFILRKALKIS" misc_feature complement(2195078..2196289) /gene="wcaD" /locus_tag="STM2112" /note="putative colanic acid polymerase WcaD; Region: WcaD; TIGR04010" /db_xref="CDD:188525" gene complement(2196264..2197492) /gene="wcaC" /locus_tag="STM2113" /db_xref="GeneID:1253634" CDS complement(2196264..2197481) /gene="wcaC" /locus_tag="STM2113" /note="in colanic acid gene cluster; similar to E. coli putative glycosyl transferase (AAC75118.1); Blastp hit to AAC75118.1 (405 aa), 80% identity in aa 1 - 405" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_461058.1" /db_xref="GeneID:1253634" /translation="MNILQFNVRLAEGGAAGVALDLHLRALQKGLTSHFVYGYGKGGK KSVSHHRYPQVIKQTPRGTAIANIALFRFLNRDLFGNLDNLYRTVIQTSGPLVLHFHV LHSYWLNLADIVTFCEKVKAQKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKSGCQKCP TLSNYPPVRVDRAHQLIDGKRQRFRDMLRLGCRFISPSQHVAEAFNSVYGAGRCQIIN NGIDLATEAILAQLSPVPLNPGKPRIAIVAHDLRYDGKTDQRLVHDMMALGEKIELHT FGKFSPFTGQNVVNHGFETDKRKLMSALNEMDALVFSSRVDNYPLILCEALSIGVPVI ATHSEAAQEVLAKSGGQTFAATDVLRLAQRRKPEIAQAVFGATLDAFRMRSRVAYSGQ QMLEEYVSFYQNL" misc_feature complement(2196267..2197481) /gene="wcaC" /locus_tag="STM2113" /note="colanic acid biosynthesis glycosyl transferase WcaC; Region: WcaC; TIGR04015" /db_xref="CDD:274919" regulatory complement(2196291..2196296) /regulatory_class="ribosome_binding_site" /gene="wcaD" /locus_tag="STM2112" /note="putative RBS for wcaD; RegulonDB:STMS1H002258" gene complement(2197478..2197981) /gene="wcaB" /locus_tag="STM2114" /db_xref="GeneID:1253635" CDS complement(2197478..2197966) /gene="wcaB" /locus_tag="STM2114" /EC_number="2.3.1.-" /note="in colanic acid gene cluster; similar to E. coli putative transferase (AAC75119.1); Blastp hit to AAC75119.1 (162 aa), 91% identity in aa 1 - 160" /codon_start=1 /transl_table=11 /product="putative acyl transferase" /protein_id="NP_461059.1" /db_xref="GeneID:1253635" /translation="MLEDLRANSWSLRPCCMVLAYRIAHFCSVWRKKNVLNNLWAAPV LVLYRVITECLFGYEIQAAATIGRRFTIHHGYAVVINKHVVAGDDFTIRHGVTIGNRG ADSLACPVIGNGVELGANVILLGDITIGNHVTIGAGSVVLDSIPDHALVVGEKARVKV ST" misc_feature complement(2197481..2197918) /gene="wcaB" /locus_tag="STM2114" /note="putative acyl transferase; Provisional; Region: PRK10191" /db_xref="CDD:182295" regulatory complement(2197487..2197492) /regulatory_class="ribosome_binding_site" /gene="wcaB" /locus_tag="STM2114" /note="putative RBS for wcaC; RegulonDB:STMS1H002259" gene complement(2197969..2198824) /gene="wcaA" /locus_tag="STM2115" /db_xref="GeneID:1253636" CDS complement(2197969..2198811) /gene="wcaA" /locus_tag="STM2115" /note="in colanic acid gene cluster; similar to E. coli putative regulator (AAC75120.1); Blastp hit to AAC75120.1 (279 aa), 91% identity in aa 3 - 279" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_461060.1" /db_xref="GeneID:1253636" /translation="MTTDNPLISIYMPTWNRQQLAIRAIKSVLRQDYRHWEMIIVDDC SSSYQQLQQFVEELNDPRVRYTHNARNTGACAVRNQAIMQAQGHYITGIDDDDEWTPN RLSVFLAHKHQLTTHAFLYANDYVCEGEVYSQPASLPLYPKSPYSRRLFYKRNIIGNQ VFTWAWRFKACLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSS PKKFSGYFHFYRKHKDKFDRASKKYQLFTLYQIRNKRMTWRTLLTLLSVRNSKRLAAG LRGR" misc_feature complement(2197972..2198808) /gene="wcaA" /locus_tag="STM2115" /note="colanic acid biosynthesis glycosyl transferase WcaA; Region: WcaA; TIGR04017" /db_xref="CDD:274920" regulatory complement(2197976..2197981) /regulatory_class="ribosome_binding_site" /gene="wcaB" /locus_tag="STM2114" /note="putative RBS for wcaB; RegulonDB:STMS1H002260" regulatory complement(2198819..2198824) /regulatory_class="ribosome_binding_site" /gene="wcaA" /locus_tag="STM2115" /note="putative RBS for wcaA; RegulonDB:STMS1H002261" gene complement(2198898..2201068) /gene="wzc" /locus_tag="STM2116" /db_xref="GeneID:1253637" CDS complement(2198898..2201057) /gene="wzc" /locus_tag="STM2116" /note="colanic acid export; similar to E. coli orf, hypothetical protein (AAC75121.1); Blastp hit to AAC75121.1 (732 aa), 87% identity in aa 13 - 732" /codon_start=1 /transl_table=11 /product="putative tyrosine-protein kinase" /protein_id="NP_461061.1" /db_xref="GeneID:1253637" /translation="MTEKAKQSAAVTGSDEIDIGRLVGTVIEARWWVLGTTAIFALCA VIYTFFATPIYSADALVQIEQNAGNSLVQDINSALANKPPASDAEIQLIRSRLVLGKT VDDLDLDIAVTKNTFPLFGAGWERLMGRHNEMVKVTTFTRPETMSGQIFTLKVLGDKR YQLVSDGGFSAQGVVGQPLNKDGVTMRVEAIDARPDTEFTVSKFSTLGMINNLQNNLT VTETGKDTGVLSLTFTGEDRDQIREILNSITRNYLQQDIARKSEEAGKSLAFLAKQLP EVRSRLDVAENKLNAFRQDKDSVDLPLEAKAVLDSMVNIDAQLNELTFKEAEISKLFT KAHPAYRTLLEKRKALEDEKAKLNGRVTAMPKTQQEIVRLTRDVESGQQVYMQLLNKQ QELKITEASTVGDVRIVDPAITQPGVLKPKKALIILGSIILGLMLSIVGVLLRSLFNR GIESPQALEEHGISVYASIPLSEWQKARDSVKTIKGIKRYKQSQLLAVGNPTDLAIEA IRSLRTSLHFAMMQAQNNVLMLTGVSPSIGKTFVCANLAAVISQTHKRVLLIDCDMRK GYTHELLGTNNVDGLSDILAGKGEIASCAKPTAIANFDLIPRGQVPPNPSELLMSERF GELIAWASSRYDLVLIDTPPILAVTDAAIVGRHAGTTLMVARYAVNTLKEVETSLSRF DQNGIQVKGVILNSIFRRATGYQDYGYYEYEYQSDSK" misc_feature complement(2198904..2201057) /gene="wzc" /locus_tag="STM2116" /note="tyrosine-protein kinase Wzc; Region: PRK11519" /db_xref="CDD:183173" misc_feature complement(order(2199003..2199008,2199015..2199017, 2199027..2199029,2199036..2199041,2199045..2199047, 2199051..2199056,2199090..2199092,2199099..2199104, 2199111..2199122,2199126..2199131,2199198..2199200, 2199207..2199209,2199234..2199236,2199360..2199365, 2199369..2199371,2199453..2199455,2199513..2199521, 2199525..2199530,2199537..2199539)) /gene="wzc" /locus_tag="STM2116" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:349772" misc_feature complement(order(2198973..2198975,2199135..2199137, 2199354..2199356,2199369..2199371,2199435..2199452)) /gene="wzc" /locus_tag="STM2116" /note="active site" /db_xref="CDD:349772" gene complement(2201054..2201515) /gene="wzb" /locus_tag="STM2117" /db_xref="GeneID:1253638" CDS complement(2201054..2201503) /gene="wzb" /locus_tag="STM2117" /EC_number="3.1.3.48" /note="colanic acid export; similar to E. coli probable protein-tyrosine-phosphatase (AAC75122.1); Blastp hit to AAC75122.1 (147 aa), 83% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="putative protein-tyrosine-phosphatase" /protein_id="NP_461062.1" /db_xref="GeneID:1253638" /translation="MFNKILVVCVGNVCRSPTAERLLKRFHPSLTVASAGLGALVGKG ADPAAASVASAHDLSLENHCARQISARLCREYDLILTMEKRHIAALCDIAPEMRGKVM LFGHWDSEREIPDPYRKSRDAFEAVYTLLERSARQWAQALNAEQGKP" misc_feature complement(2201063..2201503) /gene="wzb" /locus_tag="STM2117" /note="low molecular weight protein-tyrosine-phosphatase Wzb; Region: PRK10126" /db_xref="CDD:182256" misc_feature complement(order(2201153..2201155,2201159..2201161, 2201456..2201479)) /gene="wzb" /locus_tag="STM2117" /note="active site" /db_xref="CDD:319971" regulatory complement(2201063..2201068) /regulatory_class="ribosome_binding_site" /gene="wzb" /locus_tag="STM2117" /note="putative RBS for wzc; RegulonDB:STMS1H002262" gene complement(2201509..2202775) /gene="wza" /locus_tag="STM2118" /db_xref="GeneID:1253639" CDS complement(2201509..2202648) /gene="wza" /locus_tag="STM2118" /note="outer membrane; similar to E. coli putative polysaccharide export protein (AAC75123.1); Blastp hit to AAC75123.1 (379 aa), 93% identity in aa 1 - 379" /codon_start=1 /transl_table=11 /product="putative polysaccharide export protein" /protein_id="NP_461063.1" /db_xref="GeneID:1253639" /translation="MMKSKMKLMPLLASLSLISGCTVLPGSNMSTMGKDVIKQQDADF DLDRMVNVYPLTPRLVEQLRPRPNVAQPNMSLDQEIASYQYRVGPGDVLNVTVWDHPE LTTPAGQYRSSSDTGNWVQPDGTMFYPYIGKVSVVGKTLSEIRSDITGRLAKYIADPQ VDVNIAAFRSQKAYISGQVNKSGQQAITNVPLTVLDAINAAGGLTDMADWRNVVLTHN GKEQRISLQALMQNGDLSQNRLLYPGDILYVPRNDDLKVFVMGEVKKQSTLKMDFSGM TLTEALGNAEGIDLTTSNASGIFVIRPLKGEGGRGGKIANIYQLDMSDATSLVMATEF RLQPYDVVYVTTAPVARWNRLINQLLPTISGVRYMTDTASDIHSW" misc_feature complement(2201512..2202648) /gene="wza" /locus_tag="STM2118" /note="polysaccharide export protein Wza; Provisional; Region: PRK15078" /db_xref="CDD:237903" regulatory complement(2201510..2201515) /regulatory_class="ribosome_binding_site" /gene="wzb" /locus_tag="STM2117" /note="putative RBS for wzb; RegulonDB:STMS1H002263" regulatory complement(2202748..2202756) /regulatory_class="minus_10_signal" /gene="wza" /locus_tag="STM2118" /note="putative -10_signal for wza; RegulonDB:STMLTH004524" regulatory complement(2202767..2202775) /regulatory_class="minus_35_signal" /gene="wza" /locus_tag="STM2118" /note="putative -35_signal for wza; RegulonDB:STMLTH004524" gene 2203306..2204903 /gene="yegH" /locus_tag="STM2119" /db_xref="GeneID:1253640" regulatory 2203306..2203311 /regulatory_class="ribosome_binding_site" /gene="yegH" /locus_tag="STM2119" /note="putative RBS for yegH; RegulonDB:STMS1H002264" CDS 2203323..2204903 /gene="yegH" /locus_tag="STM2119" /note="similar to E. coli putative transport protein (AAC75124.1); Blastp hit to AAC75124.1 (549 aa), 90% identity in aa 23 - 549" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461064.1" /db_xref="GeneID:1253640" /translation="MEWIADPSIWAGLVTLIVIELVLGIDNLVFIAILAEKLPPGQRD RARITGLILAMIMRLLLLASISWLVTLTKPLFSVQALSFSARDLIMLFGGFFLLFKAT MELNERLEGKDSANPTQRKGAKFWAVVAQIVVLDAIFSLDSVITAVGMVDHLAVMMAA VIIAISLMLLASKSLTRFVNNHPTIVILCLSFLLMIGFSLVAEGFGFHIPKGYLYAAI GFSVMIEALNQLAIFNRRRFLSANHTLRQRTTEAVMRLISGKKEDAELDAETAAMLAD HDDSQIFNPQERRMIERVLNLNQRTVSSIMTSRHDIEHIDLNAPEAEIRALLEKNQHT RLVVTGENEQEDLLGVVHVIDLLQQSLRGEPLNLRALIRQPLVFPETLPLLPALEQFR NARTHFAFVVDEFGSVEGIVTLSDVMETIAGNLPNEVEEIDARHDIQKNPDGSWTANG HMPLEDLVQYVPLPLDEKREYHTIAGLLMEYLQRIPQTGEEVQVGDYLLKTLQVESHR VQKVQLIPLHNGEPDQEM" misc_feature 2203323..2204033 /gene="yegH" /locus_tag="STM2119" /note="Tellurite resistance membrane protein TerC [Inorganic ion transport and metabolism]; Region: TerC; COG0861" /db_xref="CDD:440622" misc_feature 2203755..2204894 /gene="yegH" /locus_tag="STM2119" /note="Hemolysin-related protein, contains CBS domains, UPF0053 family [General function prediction only]; Region: TlyC; COG1253" /db_xref="CDD:440865" gene complement(2204989..2206854) /gene="asmA" /locus_tag="STM2120" /db_xref="GeneID:1253641" CDS complement(2204989..2206845) /gene="asmA" /locus_tag="STM2120" /note="similar to E. coli suppressor of ompF assembly mutants (AAC75125.1); Blastp hit to AAC75125.1 (617 aa), 76% identity in aa 1 - 617" /codon_start=1 /transl_table=11 /product="suppressor of ompF assembly mutants" /protein_id="NP_461065.1" /db_xref="GeneID:1253641" /translation="MRRFLTTLMILLVVLVAGFSALVLLVNPNDFRAYMVQQVAARSE YQLQLDGPLRWHVWPQLSILSGRMTLTARGASEPLVRADNMRLDVALWPLLSHQLHVK QVMLKGGVIQLTPQTEAVRSDDAPVAPKDNTLPDVAEDRGWSFDIRSLRVADSVLVFQ HENDDQVTVRDIRLNMEQDAEHRGTFDFSGRVNRDQRDLALSFSGTVDASDYPHNLTA GIEQLRWQLQGADLPAQGIEGQGQLQAQWQEAQKRLSFNHLNLTANDSSLTGQVQVTL AEQPEWQIDLQSSKLNLDNLLPHHSAVAQTGGAVSQGQNTLPLTRPVIASRVGAPPYQ GLQSFTAEIALQADSVRWRGMDFTQVSTKMSNQAGLLDITDLQGKLADGEMSLPGTLD ARTASPRIEFHPRLNHVEIGTILKAFNYPISLTGKMSLVGDFSGADIDAEAFRHSWKG KAHVDMSNTRLEGMNFQQLVQQAVERSGGDAQQSQENMDNATRLDRFTTDLTLNKGTL TLDDMVGQSSMLALTGSGTLDLVKQSCDTQFNLRVLGGWNGDSNLITFLKETPVPLRV YGKWQELNYTLQVDQLLRKHLQDEAKRRLNDWADRNKDTRNGKDVKKLLNKL" misc_feature complement(2204992..2206845) /gene="asmA" /locus_tag="STM2120" /note="putative assembly protein; Provisional; Region: PRK10833" /db_xref="CDD:236772" regulatory complement(2206849..2206854) /regulatory_class="ribosome_binding_site" /gene="asmA" /locus_tag="STM2120" /note="putative RBS for asmA; RegulonDB:STMS1H002265" gene complement(2206884..2207479) /gene="dcd" /locus_tag="STM2121" /db_xref="GeneID:1253642" CDS complement(2206884..2207465) /gene="dcd" /locus_tag="STM2121" /EC_number="3.5.4.13" /note="similar to E. coli 2'-deoxycytidine 5'-triphosphate deaminase (AAC75126.1); Blastp hit to AAC75126.1 (193 aa), 95% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="dUTPase" /protein_id="NP_461066.1" /db_xref="GeneID:1253642" /translation="MRLCDRDIEAWLDEGRLSITPRPPVERINGATVDVRLGNKFRTF RGHTAAFIDLSGPKDEVSAALDRVMSDEIVLPDGEAFYLHPGELALAVTFESVTLPPD LVGWLDGRSSLARLGLMVHVTAHRIDPGWSGCIVLEFYNSGKLPLALRPGMLIGALSF EPLSGPAARPYNRRQDAKYRDQQGAVASRIDKD" misc_feature complement(2206896..2207462) /gene="dcd" /locus_tag="STM2121" /note="deoxycytidine triphosphate deaminase; Region: dCTP_deam; TIGR02274" /db_xref="CDD:274062" misc_feature complement(order(2206995..2206997,2207007..2207009, 2207016..2207030,2207040..2207042,2207046..2207048, 2207052..2207054,2207058..2207060,2207079..2207081, 2207091..2207093,2207106..2207114,2207127..2207144, 2207148..2207150,2207196..2207198,2207202..2207207, 2207220..2207222)) /gene="dcd" /locus_tag="STM2121" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:143638" misc_feature complement(order(2207058..2207063,2207073..2207075, 2207082..2207087,2207091..2207093,2207130..2207138)) /gene="dcd" /locus_tag="STM2121" /note="active site" /db_xref="CDD:143638" regulatory complement(2207474..2207479) /regulatory_class="ribosome_binding_site" /gene="dcd" /locus_tag="STM2121" /note="putative RBS for dcd; RegulonDB:STMS1H002266" gene complement(2207556..2208212) /gene="udk" /locus_tag="STM2122" /db_xref="GeneID:1253643" CDS complement(2207556..2208197) /gene="udk" /locus_tag="STM2122" /EC_number="2.7.1.48" /note="similar to E. coli uridine/cytidine kinase (AAC75127.1); Blastp hit to AAC75127.1 (231 aa), 95% identity in aa 19 - 231" /codon_start=1 /transl_table=11 /product="uridine/cytidine kinase" /protein_id="NP_461067.1" /db_xref="GeneID:1253643" /translation="MTDQSHQCVIIGIAGASASGKSLIASTLYRELREQVGDEHIGVI PEDSYYKDQSHLSMEERVKTNYDHPNAMDHSLLFQHLQALKRGSAIELPVYSYVEHTR MQETVRVEPKKVIILEGILLLTDARLREEMNFSIFVDTPLDICLMRRIKRDVNERGRS MDSVMAQYQKTVRPMFLQFIEPSKQYADIIVPRGGKNRIAIDILKAKISQFFE" misc_feature complement(2207559..2208191) /gene="udk" /locus_tag="STM2122" /note="uridine/cytidine kinase; Provisional; Region: PRK05480" /db_xref="CDD:235492" misc_feature complement(order(2207610..2207612,2207754..2207756, 2208132..2208134)) /gene="udk" /locus_tag="STM2122" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:238981" misc_feature complement(order(2207751..2207753,2207991..2207993, 2208057..2208059)) /gene="udk" /locus_tag="STM2122" /note="Sugar specificity [active]" /db_xref="CDD:238981" misc_feature complement(order(2207727..2207729,2207898..2207900, 2207907..2207909,2207913..2207915,2208000..2208002, 2208048..2208050)) /gene="udk" /locus_tag="STM2122" /note="Pyrimidine base specificity [active]" /db_xref="CDD:238981" regulatory complement(2208207..2208212) /regulatory_class="ribosome_binding_site" /gene="udk" /locus_tag="STM2122" /note="putative RBS for udk; RegulonDB:STMS1H002267" gene 2208522..2211518 /gene="yegE" /locus_tag="STM2123" /db_xref="GeneID:1253644" regulatory 2208522..2208527 /regulatory_class="ribosome_binding_site" /gene="yegE" /locus_tag="STM2123" /note="putative RBS for yegE; RegulonDB:STMS1H002268" CDS 2208528..2211518 /gene="yegE" /locus_tag="STM2123" /note="Diguanylate cyclase/phosphodiesterase domain 1 and Diguanylate cyclase/phosphodiesterase domain 2 containing; similar to E. coli putative sensor-type protein (AAC75128.1); Blastp hit to AAC75128.1 (1105 aa), 76% identity in aa 540 - 437" /codon_start=1 /transl_table=11 /product="putative PAS/PAC domain protein" /protein_id="NP_461068.1" /db_xref="GeneID:1253644" /translation="MSKPSQHVFVTVPHPLLRLVSLGLVAFVFTLFSLVLSRVGTQLA PLWFPTSIMMVAFYRHAGRLWPGIAVACSLGSIGASLTLFPAASLNFSWTAINIIEAA TGAILLRKLLPSYNPLQNLNDWFRLAIGSAVIPPLLGGLLFWLIAPEAVASKAFLIWV LSEAIGALTLVPLGLLFKPHYLLRHRDPHLLLETLLTLVITLALSWLAMRYIPWPFTC VIVLLMWSAVRLPRMEAFLIFLATVIVVSLMLANDPTLLATPKTDVMVNMPWLPFLMI LLPANMMTMVMYAFRTERKHITESESRFRNAMEYSAIGMALVGTEGQWLQVNKSLSHF LGYSQDELRTMTFQQLTWPEDLNNDLEQLNMLVRGDINSYSMEKRYYTRNGDVVWALL AVSLVRHKDNKPLYFIAQIEDINDLKQSEQENQRLMERITQANEALFQEKERLHITLD SIGEAVVCIDVAMNITFMNPIAEKMSGWRQEDALGTPLLTVLRITSGDKGPLLEDIYR ADRSRSDMEQEIVLHCHNGGSYDIHYSITPLSTLDGDKIGSVLVIQDVTESRKMLRQL SYSATHDALTQLANRASFEKQLQQRLQTIQESPQHHALVFIDLDRFKAVNDSAGHAAG DALLRELASLMLSMLRSGDLLARLGGDEFGLLLPDCNSDSARFIATRLINAINEYHFM WEGRLHRIGASAGITMINEHNCQLTEVVSQADIACYAAKNSGRGRLTVYEPQHALTSS KGMMPLEEQWHMIKNNHLLMLARNVAPPRTPEATSFWLVSLRLWTSEGEVMEERAFRA GLADSALHHALDRRVFHEFFHHAATAVASKGLSVALPLSAAGLYSATLIDELLEQLEH SPLPPRLLHLIIPADVIVKQAQTAAATLRKLRQRGCQVILSHVGRDLQLFNLLPLHIV DYLLLDSDLIANVHESLMDEMLTSIIQGHAQHLDIKTLAGPVQNPQVLDTLSRIGVDL IYGDTIAEAQPLDLLLNTSYFAIH" misc_feature 2208585..2211515 /gene="yegE" /locus_tag="STM2123" /note="putative diguanylate cyclase; Provisional; Region: PRK09776" /db_xref="CDD:182070" gene complement(2211486..2212521) /gene="alkA" /locus_tag="STM2124" /db_xref="GeneID:1253645" CDS complement(2211486..2212355) /gene="alkA" /locus_tag="STM2124" /EC_number="3.2.2.21" /note="inducible; similar to E. coli 3-methyl-adenine DNA glycosylase II, inducible (AAC75129.1); Blastp hit to AAC75129.1 (282 aa), 74% identity in aa 1 - 279" /codon_start=1 /transl_table=11 /product="3-methyl-adenine DNA glycosylase II" /protein_id="NP_461069.1" /db_xref="GeneID:1253645" /translation="MFTLSWQPPYDWSWMLGFLAARAVDGVETVGEGFYARSLVVGEH RGLVSVRPHLPTHTVQVSVSAGLLPVAPACLAKVSRLFDLDCQPAQVAAVLGPLGEDR PGLRLPGSVDTFEQGVRAILGQLVSVAMAARLTAKVARRYGEALPDAPDYVCFPGPET LALADPLALKALGMPLRRAEALIHLAQATLAGKLALAAPPDIEQSVKNLQTFPGIGRW TANYFALRGWQAKDIFLPDDYLIKQRFAGMTPAQIRRYAERWKPWRSYALLHIWYTHG WQPSMDSEIAGIQ" misc_feature complement(2211507..2212355) /gene="alkA" /locus_tag="STM2124" /note="3-methyl-adenine DNA glycosylase II; Provisional; Region: PRK10308" /db_xref="CDD:236671" regulatory complement(2212362..2212367) /regulatory_class="ribosome_binding_site" /gene="alkA" /locus_tag="STM2124" /note="putative RBS for alkA; RegulonDB:STMS1H002269" protein_bind complement(2212372..2212392) /gene="alkA" /locus_tag="STM2124" /note="putative binding site for Ada, RegulonDB: STMS1H000001" /bound_moiety="Ada" gene 2212475..2213841 /gene="yegD" /locus_tag="STM2125" /db_xref="GeneID:1253646" regulatory 2212475..2212480 /regulatory_class="ribosome_binding_site" /gene="yegD" /locus_tag="STM2125" /note="putative RBS for yegD; RegulonDB:STMS1H002270" CDS 2212489..2213841 /gene="yegD" /locus_tag="STM2125" /note="similar to E. coli putative heat shock protein (AAC75130.1); Blastp hit to AAC75130.1 (471 aa), 88% identity in aa 22 - 471" /codon_start=1 /transl_table=11 /product="putative heat shock protein (Hsp70/DnaK)" /protein_id="NP_461070.1" /db_xref="GeneID:1253646" /translation="MFIGFDYGTANCSVAIMRDGHPQLLTMENNSALLPSMLCAPTRE AVSEWLYRHHDVPATDEETQALLRRAIRYNREEDIEVGAQSVQFGLASLAHYIDDPQE VWFVKSPKSFLGASGLKPQQVALFEDLVCAMMVHIRHTAHSQLPEAITQAVIGRPINF QGLGGDDANRQAQGILERAAKRAGFQEVVFQYEPVAAGLDYEATLREEKRVLVVDIGG GTTDCSMLLMGPQWRQRADRENSLLGHSGCRVGGNDLDIALAFKNLMPLLGMGGETEK GIALPVLPWWNAVAINDVPAQSDFYSSANGRLLNDLVRNAREADKVALLLKVWRQRLS YRLVRCAEESKIALSGQADVTARLPFISDDLAVAISQQGLEAALDQPLTRILEQVQLA LDSAQEKPDVIYLTGGSARSPLIKKALSEQLPGIPVAGGDDFGSVTAGLARWAEVVFR " misc_feature 2212489..2213838 /gene="yegD" /locus_tag="STM2125" /note="putative chaperone; Provisional; Region: PRK11678" /db_xref="CDD:236954" regulatory complement(2212497..2212505) /regulatory_class="minus_10_signal" /gene="alkA" /locus_tag="STM2124" /note="putative -10_signal for alkA; RegulonDB:STMLTH004525" regulatory complement(2212513..2212521) /regulatory_class="minus_35_signal" /gene="alkA" /locus_tag="STM2124" /note="putative -35_signal for alkA; RegulonDB:STMLTH004525" gene 2214267..2215523 /locus_tag="STM2126" /db_xref="GeneID:1253647" regulatory 2214267..2214272 /regulatory_class="ribosome_binding_site" /locus_tag="STM2126" /note="putative RBS for STM2126; RegulonDB:STMS1H002271" CDS 2214282..2215523 /locus_tag="STM2126" /note="similar to E. coli putative membrane protein (AAC75135.1); Blastp hit to AAC75135.1 (464 aa), 82% identity in aa 50 - 464" /codon_start=1 /transl_table=11 /product="putative HlyD family secretion protein" /protein_id="NP_461071.1" /db_xref="GeneID:1253647" /translation="MKGSNTFRWAIAIGVVVAAAAFWFWHSRSESPTAAPGVAAQAPH TASAGRRGMRDGPLAPVQAATATTQAVPRYLSGLGTVTAANTVTVRSRVDGQLIALHF QEGQQVNAGDLLAQIDPSQFKVALAQAQGQLAKDNATLANARRDLARYQQLAKTNLVS RQELDAQQALVNETQGTIKADEANVASAQLQLDWSRITAPVSGRVGLKQVDVGNQISS SDTAGIVVITQTHPIDLIFTLPESDIATVVQAQKAGKALVVEAWDRTNSHKLSEGVLL SLDNQIDPTTGTIKIKARFTNQDDTLFPNQFVNARMLVDTEQNAVVVPAAAVQMGNEG HFVWVLNDENNVSKKRVKIGIQDNRNVVISAGLSAGDRVVTDGIDRLTEGAKVEVVEP QTTVADEKSPSRHEGQKGARA" misc_feature 2214282..2215520 /locus_tag="STM2126" /note="MdtA/MuxA family multidrug efflux RND transporter periplasmic adaptor subunit; Region: PRK11556" /db_xref="CDD:183194" gene 2215507..2218645 /gene="yegN" /locus_tag="STM2127" /db_xref="GeneID:1253648" regulatory 2215507..2215512 /regulatory_class="ribosome_binding_site" /locus_tag="STM2126" /note="putative RBS for yegN; RegulonDB:STMS1H002272" CDS 2215523..2218645 /gene="yegN" /locus_tag="STM2127" /note="similar to E. coli orf, hypothetical protein (AAC75136.1); Blastp hit to AAC75136.1 (1040 aa), 91% identity in aa 1 - 1040" /codon_start=1 /transl_table=11 /product="putative outer membrane receptor" /protein_id="NP_461072.1" /db_xref="GeneID:1253648" /translation="MQVLPPGSTGGPSRLFILRPVATTLLMAAILLAGIIGYRFLPVA ALPEVDYPTIQVVTLYPGASPDVMTSAVTAPLERQFGQMSGLKQMSSQSSGGASVVTL QFQLTLPLDVAEQEVQAAINAATNLLPSDLPNPPIYSKVNPADPPIMTLAVTSNSMPM TQVEDMVETRVAQKISQVSGVGLVTLAGGQRPAVRVKLNAQAVAALGLTSETVRTAIT GANVNSAKGSLDGPERAVTLSANDQMQSADEYRRLIIAYQNGAPVRLGDVATVEQGAE NSWLGAWANQAPAIVMNVQRQPGANIIATADSIRQMLPQLTESLPKSVKVTVLSDRTT NIRASVRDTQFELMLAIALVVMIIYLFLRNIPATIIPGVAVPLSLIGTFAVMVFLDFS INNLTLMALTIATGFVVDDAIVVIENISRYIEKGEKPLAAALKGAGEIGFTIISLTFS LIAVLIPLLFMGDIVGRLFREFAVTLAVAILISAVVSLTLTPMMCARMLSQQSLRKQN RFSRACERMFDRVIASYGRGLAKVLNHPWLTLSVAFATLLLSVMLWIVIPKGFFPVQD NGIIQGTLQAPQSSSYASMAQRQRQVAERILQDPAVQSLTTFVGVDGANPTLNSARLQ INLKPLDARDDRVQQVISRLQTAVATIPGVELYLQPTQDLTIDTQVSRTQYQFTLQAT TLDALSHWVPKLQNALQSLPQLSEVSSDWQDRGLAAWVNVDRDSASRLGISMADVDNA LYNAFGQRLISTIYTQANQYRVVLEHNTASMPGLAALETIRLTSRDGGTVPLSAIARI EQRFAPLSINHLDQFPVTTFSFNVPESYSLGDAVQAILDTEKTLALPADITTQFQGST LAFQAALGSTVWLIVAAVVAMYIVLGVLYESFIHPITILSTLPTAGVGALLALIIAGS ELDIIAIIGIILLIGIVKKNAIMMIDFALAAEREQGMSPRDAIFQACLLRFRPILMTT LAALLGALPLMLSTGVGTELRRPLGIAMVGGLLVSQVLTLFTTPVIYLLFDRLSLYVK SRFPRHKEEA" misc_feature 2215523..2218642 /gene="yegN" /locus_tag="STM2127" /note="MdtB/MuxB family multidrug efflux RND transporter permease subunit; Region: PRK10503" /db_xref="CDD:182501" gene 2218634..2221726 /gene="yegO" /locus_tag="STM2128" /db_xref="GeneID:1253649" regulatory 2218634..2218639 /regulatory_class="ribosome_binding_site" /gene="yegO" /locus_tag="STM2128" /note="putative RBS for yegO; RegulonDB:STMS1H002273" CDS 2218646..2221726 /gene="yegO" /locus_tag="STM2128" /note="efflux transporter; outer membrane; similar to E. coli orf, hypothetical protein (AAC75137.1); Blastp hit to AAC75137.1 (1025 aa), 91% identity in aa 1 - 1025" /codon_start=1 /transl_table=11 /product="putative resistance protein" /protein_id="NP_461073.1" /db_xref="GeneID:1253649" /translation="MRFFALFIYRPVATILIAAAITLCGILGFRLLPVAPLPQVDFPV IMVSASLPGASPETMASSVATPLERSLGRIAGVNEMTSSSSLGSTRIILEFNFDRDIN GAARDVQAAINAAQSLLPGGMPSRPTYRKANPSDAPIMILTLTSESWSQGKLYDFAST QLAQTIAQIDGVGDVDVGGSSLPAVRVGLNPQALFNQGVSLDEVREAIDSANVRRPQG AIEDSVHRWQIQTNDELKTAAEYQPLIIHYNNGAAVRLGDVASVTDSVQDVRNAGMTN AKPAILLMIRKLPEANIIQTVDGIRAKLPELRAMIPAAIDLQIAQDRSPTIRASLQEV EETLAISVALVILVVFLFLRSGRATLIPAVAVPVSLIGTFAAMYLCGFSLNNLSLMAL TIATGFVVDDAIVVLENIARHLEAGMKPLQAALQGTREVGFTVISMSLSLVAVFLPLL LMGGLPGRLLREFAVTLSVAIGISLVVSLTLTPMMCGWMLKSSKPRTQPRKRGVGRLL VALQQGYGTSLKWVLNHTRLVGVVFLGTVALNIWLYIAIPKTFFPEQDTGVLMGGIQA DQSISFQAMRGKLQDFMKIIRDDPAVNNVTGFTGGSRVNSGMMFITLKPRGERKETAQ QIIDRLRVKLAKEPGARLFLMAVQDIRVGGRQANASYQYTLLSDSLAALREWEPKIRK ALSALPQLADVNSDQQDNGAEMNLIYDRDTMSRLGIDVQAANSLLNNAFGQRQISTIY QPMNQYKVVMEVDPRYSQDISALEKMFVINRDGKAIPLSYFAQWRPANAPLSVNHQGL SAASTIAFNLPTGTSLSQATEAINRTMTQLGVPSTVRGSFSGTAQVFQQTMNSQLILI VAAIATVYIVLGILYESYVHPLTILSTLPSAGVGALLALELFNAPFSLIALIGIMLLI GIVKKNAIMMVDFALEAQRSGGLTPEQAIFQACLLRFRPIMMTTLAALFGALPLVLSG GDGSELRQPLGITIVGGLVMSQLLTLYTTPVVYLFFDRLRLRFSRKNSKPVVEI" misc_feature 2218646..2221720 /gene="yegO" /locus_tag="STM2128" /note="multidrug efflux system subunit MdtC; Provisional; Region: PRK10614" /db_xref="CDD:182589" gene 2221709..2223135 /gene="yegB" /locus_tag="STM2129" /db_xref="GeneID:1253650" regulatory 2221709..2221714 /regulatory_class="ribosome_binding_site" /gene="yegB" /locus_tag="STM2129" /note="putative RBS for yegB; RegulonDB:STMS1H002274" CDS 2221723..2223135 /gene="yegB" /locus_tag="STM2129" /note="similar to E. coli putative transport protein (AAC75138.1); Blastp hit to AAC75138.1 (471 aa), 85% identity in aa 1 - 469" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_461074.1" /db_xref="GeneID:1253650" /translation="MTELPDNTRWQLWIVAFGFFMQSLDTTIVNTALPSMAKSLGESP LHMHMVVVSYVLTVAVMLPASGWLADKIGVRNIFFAAIVLFTLGSLFCALSGTLNQLV LARVLQGVGGAMMVPVGRLTVMKIVPRAQYMAAMTFVTLPGQIGPLLGPALGGVLVEY ASWHWIFLINIPVGIVGAMATFMLMPNYIIETRRFDLPGFLLLAIGMAVLTLALDGSK SMGISPWTLAGLAAGGAAAILLYLFHAKKNSGALFSLRLFRTPTFSLGLLGSFAGRIG SGMLPFMTPVFLQIGLGFSPFHAGLMMIPMVLGSMGMKRIVVQIVNRFGYRRVLVATT LGLALVSLLFMSVALLGWYYLLPLVLLLQGMVNSARFSSMNTLTLKDLPDTLASSGNS LLSMIMQLSMSIGVTIAGMLLGMFGQQHIGIDSSATHHVFMYTWLCMAVIIALPAIIF ARVPNDTQQNMVISRRKRSL" misc_feature 2221723..2223129 /gene="yegB" /locus_tag="STM2129" /note="putative transporter; Provisional; Region: PRK10504" /db_xref="CDD:182502" gene 2223123..2224538 /gene="baeS" /locus_tag="STM2130" /db_xref="GeneID:1253651" regulatory 2223123..2223128 /regulatory_class="ribosome_binding_site" /gene="baeS" /locus_tag="STM2130" /note="putative RBS for baeS; RegulonDB:STMS1H002275" CDS 2223135..2224538 /gene="baeS" /locus_tag="STM2130" /EC_number="2.7.3.-" /note="similar to E. coli sensor protein (for BaeR) (AAC75139.1); Blastp hit to AAC75139.1 (467 aa), 88% identity in aa 1 - 467" /codon_start=1 /transl_table=11 /product="sensory kinase in two-component regulatoyr system wtih BaeR" /protein_id="NP_461075.1" /db_xref="GeneID:1253651" /translation="MKVWRPGITGKLFLAIFATCIVLLISMHWAVRVSFERGFIDYIK HGNEQRLQMLGDALGDQYQQHGNWRFLRNNDRFVFQILRSFEHDNDRDKPGPGMPPHG WRTQFWVVDQNGRVLVGPRGPVPHDGTRRPILVNDVEVGAIIASPVERLTRNTDINFD MQQRRASWMIVALSTLLAALATFLLARGLLAPVKRLVEGTHRLAAGDFTTRVTPTSAD ELGKLAQDFNQLASTLEKNQQMRRDFMADISHELRTPLAVLRGELEAIQDGVRQFTPE SVTSLQAEVGTLTKLVDDLHQLSLSDEGALAYQKTTVDLVPLLEVAGGAFRERFTSRG LTLHYALPDSMTVFGDPDRLMQLFNNLLENSLRYTDSGGGLHISAEQRDKSLFLTFAD SAPGVSDEQLQKLFDRFYRTEVSRNRASGGSGLGLAICVNIVHAHNGHLHAAHSPFGG VSITVELPLDRDLQREV" misc_feature 2223135..2224535 /gene="baeS" /locus_tag="STM2130" /note="two-component system sensor histidine kinase BaeS; Region: PRK10549" /db_xref="CDD:182539" gene 2224528..2225257 /gene="baeR" /locus_tag="STM2131" /db_xref="GeneID:1253652" regulatory 2224528..2224533 /regulatory_class="ribosome_binding_site" /gene="baeR" /locus_tag="STM2131" /note="putative RBS for baeR; RegulonDB:STMS1H002276" CDS 2224535..2225257 /gene="baeR" /locus_tag="STM2131" /note="OmpR family; similar to E. coli transcriptional response regulatory protein (sensor BaeS) (AAC75140.1); Blastp hit to AAC75140.1 (240 aa), 96% identity in aa 1 - 240" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with BaeS" /protein_id="NP_461076.1" /db_xref="GeneID:1253652" /translation="MTELPIDENTPRILIVEDEPKLGQLLIDYLRAASYAPTLINHGD KVLPYVRQTPPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVTAKIEEIDRLLGLEI GADDYICKPYSPREVVARVKTILRRCKPQRELQQQDAESPLMIDESRFQASWCGKALD LTPAEFRLLKTLSLEPGKVFSREQLLNHLYDDYRVVTDRTIDSHIKNLRRKLESLDAE QSFIRAVYGVGYRWEADACRLV" misc_feature 2224535..2225254 /gene="baeR" /locus_tag="STM2131" /note="DNA-binding transcriptional regulator BaeR; Provisional; Region: PRK10710" /db_xref="CDD:182665" gene 2225526..2225844 /locus_tag="STM2132" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1253653" gene 2225838..2226728 /locus_tag="STM2133" /db_xref="GeneID:1253654" regulatory 2225838..2225843 /regulatory_class="ribosome_binding_site" /locus_tag="STM2132" /note="putative RBS for STM2133; RegulonDB:STMS1H002278" /pseudo CDS 2225844..2226728 /locus_tag="STM2133" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461077.1" /db_xref="GeneID:1253654" /translation="MEFLSRQEGTRLETKLQRINCFTVLAMREAEHQKMQRLREQGWY PSNSEALKPVMTVNNGVLVELDATNPGLRSEMAYESWHMQHCVGDFDNKGALSGGYGD YYARQIEQQKLRLFSLRDGNNIPHVTISLVVGNNGLSIDQIKGKQNRHPIKKYANDVL SLLRHLQPLPERHADCEGMGIVYELTPEYSGWKFITHIHDLNFLLNVLHDNFHLMEHF PTPPVALQWLLLHSAPEALRYLQVVDPNVATAAEMLFPQHEWHPTLAGKNTSSEPFEI ESLTLQTTRYLPVIKEVQ" gene 2226721..2227444 /locus_tag="STM2134" /db_xref="GeneID:1253655" regulatory 2226721..2226726 /regulatory_class="ribosome_binding_site" /locus_tag="STM2134" /note="putative RBS for STM2134; RegulonDB:STMS1H002279" CDS 2226728..2227444 /locus_tag="STM2134" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461078.1" /db_xref="GeneID:1253655" /translation="MFWIVLIIAALFFSWRNYKKNKPLIAARIAEEKEKDRLKDLRRD TRRRQWALALADILARRNGLPIKGVELVFKLDDDKRRYLAQQVKKELGLSENLDGAAL RHKVEDILRRWPAGIGSSPRTFYHHLAAQGQVRDALAFDCMRTAFLTRCIAGLGWCDV HQAWLVLLLNAQRAQDCFDSWEDYATAYVRARRVWLTLRDTPTALAGRDLQEATHYLQ DPVSRWRQLPWNEFKIFEPI" misc_feature <2227139..2227414 /locus_tag="STM2134" /note="Protein of unknown function (DUF1266); Region: DUF1266; cl14673" /db_xref="CDD:472703" gene 2227449..2229566 /locus_tag="STM2135" /db_xref="GeneID:1253656" regulatory 2227449..2227454 /regulatory_class="ribosome_binding_site" /locus_tag="STM2135" /note="putative RBS for STM2135; RegulonDB:STMS1H002280" CDS 2227455..2229566 /locus_tag="STM2135" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461079.1" /db_xref="GeneID:1253656" /translation="MEQDDRLLNAMFEMCNHKNPLNDGQREWHIADIPGLLREERYDE LDERYNQALTESFTSREAEKRYFFAWNQMDNPFYDMDTLVEAGPQGLALIKNWQRARP RSTHAWLAEAQYWNHRAWLYRSYGWARETTRAMWICAAACNERMVIAALNAIDCEPRQ WMAAALTSTNSKVFGQPEWLVEFLVGADVAGQPLMEDLAEYHRHSPQEVDALMAHSGL SFTDAVCPNLPRPSVLPECNDDAGQKYWLAVCLAIFPTAFYVLDEYIPFRMPRWRGSH EEIREFLESSVCDHLSAAEREHLELLIWWDDHRDLRIKEVDSPAEQERIIAKAEEISL RAHIQESRHNALEWLRVCYSDLDDNDALWRTLQRSIVEKVKLNNYFSDDTIKFALRDF PDTWWMYNFLCQNAQQTEFAVPKIRRGYFQYAGLLGFEKDEAQGLAWLDSVADIQYNH NWRAAIKNFDWFGLPEHFVPLAELGAQRNIPAALNLLGLEHNNKENNGLLPYDPAIAL GYFQRAAEILHRQLALRESTPYKLIDNGGYTDYENDLQNIHFSIGICNQRLSKQEPDT EKRSAYEKELLDNLWLAHQFGHKEAWGLFLLNIFEVKDITLAHKHLELVQQEANKGTL HAMVTLSRLHGNKHDRTLFNMKLSARWAHFAFTLYPDNEIVMDCLDHLHFDSFWKRFR FAWYTVRIPNSELPGQVNSMV" misc_feature 2227539..2228372 /locus_tag="STM2135" /note="Domain of unknown function (DUF4034); Region: DUF4034; pfam13226" /db_xref="CDD:404165" gene 2229673..2231043 /gene="yegQ" /locus_tag="STM2136" /db_xref="GeneID:1253657" regulatory 2229673..2229678 /regulatory_class="ribosome_binding_site" /gene="yegQ" /locus_tag="STM2136" /note="putative RBS for yegQ; RegulonDB:STMS1H002281" CDS 2229682..2231043 /gene="yegQ" /locus_tag="STM2136" /EC_number="3.4.-.-" /note="similar to E. coli orf, hypothetical protein (AAC75142.1); Blastp hit to AAC75142.1 (453 aa), 96% identity in aa 1 - 453" /codon_start=1 /transl_table=11 /product="putative protease" /protein_id="NP_461080.1" /db_xref="GeneID:1253657" /translation="MFKPELLSPAGTLKNMRYAFAYGADAVYAGQPRYSLRVRNNEFN HENLQLGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLKPVVEMGPDALIMSDPGLIM LVREHFPAMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELSLEEIEEIRQQVPDME IEIFVHGALCMAYSGRCLLSGYINKRDPNQGTCTNACRWEYNVQEGKEDVVGNIVHKH EPIPVQNVEPTLGIGAPTDKVFMIEEAQRPGEYMTAFEDEHGTYIMNSKDLRAIAHVE RLTKMGVHSLKIEGRTKSFYYCARTAQVYRKAIDDAAAGKPFDPTLLETLEGLAHRGY TEGFLRRHTHDDYQNYEYGYSVSERQQFVGEFTGERKGQLAAVAVKNKFSVGDSLELM TPQGNINFTLEQMENAKGDAMPVAPGDGYTVWMPVPQDVTLDYALLMRNFSGESTRNP HAK" misc_feature 2229682..2231010 /gene="yegQ" /locus_tag="STM2136" /note="putative protease; Provisional; Region: PRK15452" /db_xref="CDD:237969" gene 2231494..2232540 /locus_tag="STM2137" /db_xref="GeneID:1253658" CDS 2231494..2232540 /locus_tag="STM2137" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461081.1" /db_xref="GeneID:1253658" /translation="MARFNAAFTRIKIMFSRIRGLISCQSNTQTIAPTLSPPSSGHVS FAGIDYPLLPLNHQTPLVFQWFERNPDRFGQNEIPIINTQKNPYLNNIINAAIIEKER IIGIFVDGDFSKGQRKALGKLEQNYRNIKVIYNSDLNYSMYDKKLTTIYLENITKLEA QSASERDEVLLNGVKKSLEDVLKNNPEETLISSHNKDKGHLWFDFYRNLFLLKGSDAF LEAGKPGCHHLQPGGGCIYLDADMLLTDKLGTLYLPDGIAIHVSRKDNHVSLENGIIA VNRSEHPALIKGLEIMHSKPYGDPYNDWLSKGLRHYFDGSHIQDYDAFCDFIEFKHEN IIMNTSSLTASSWR" misc_feature 2231533..2232537 /locus_tag="STM2137" /note="type III secretion system effector arginine glycosyltransferase; Region: PRK15383" /db_xref="CDD:185281" gene complement(2232576..2232997) /locus_tag="STM2138" /db_xref="GeneID:1253659" CDS complement(2232576..2232992) /locus_tag="STM2138" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461082.1" /db_xref="GeneID:1253659" /translation="MYSRADRLLRQFSLKLNTDSIVFDENRLCSFIIDNRYRILLTST NSEYIMIYGFCGKPPDNNNLAFEFLNANLWFAENNGPHLCYDNNSQSLLLALNFSLNE SSVEKLECEIEVVIRSMENLYHILQDKGITLDTDYT" misc_feature complement(2232591..2232986) /locus_tag="STM2138" /note="Class IA type III secretion system chaperone protein, similar to Escherichia coli CesT; Region: T3SC_IA_CesT-like; cd17023" /db_xref="CDD:409307" misc_feature complement(order(2232702..2232704,2232708..2232710, 2232714..2232716,2232732..2232734,2232738..2232755, 2232774..2232779,2232783..2232791,2232795..2232803, 2232843..2232845,2232849..2232851)) /locus_tag="STM2138" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:409307" regulatory complement(2232992..2232997) /regulatory_class="ribosome_binding_site" /locus_tag="STM2138" /note="putative RBS for STM2138; RegulonDB:STMS1H002282" gene complement(2233114..2233455) /locus_tag="STM2139" /db_xref="GeneID:1253660" CDS complement(2233114..2233449) /locus_tag="STM2139" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461083.1" /db_xref="GeneID:1253660" /translation="MNVTSGVNAQTPLLPPSERGNDEKPVAEIVDFNAYGNKPRCLMC LGTTALFTSVFSGVCSGAVASVSSGAAYTTALTVLGASFGMGGIGMMGICAGLYLSAN GIRTRPAWP" regulatory complement(2233450..2233455) /regulatory_class="ribosome_binding_site" /locus_tag="STM2139" /note="putative RBS for STM2139; RegulonDB:STMS1H002283" gene 2233999..2234910 /gene="yegS" /locus_tag="STM2140" /db_xref="GeneID:1253661" regulatory 2233999..2234004 /regulatory_class="ribosome_binding_site" /gene="yegS" /locus_tag="STM2140" /note="putative RBS for yegS; RegulonDB:STMS1H002284" CDS 2234011..2234910 /gene="yegS" /locus_tag="STM2140" /note="similar to E. coli orf, hypothetical protein (AAC75147.1); Blastp hit to AAC75147.1 (299 aa), 85% identity in aa 1 - 299" /codon_start=1 /transl_table=11 /product="putative diacylglycerol kinase catalytic domain containing protein" /protein_id="NP_461084.1" /db_xref="GeneID:1253661" /translation="MANFPASLLILNGKSADNQPLREAITLLRDEGIQIHVRVTWEKG DAQRYVDEARRLGVETVIAGGGDGTINEVSTALIQIRDGVAPALGLLPLGTANDFATS AGIPEALDKALKLAIAGNAMEIDMAMVNDKTCFINMATGGFGTRITTETPEKLKAALG GVSYLIHGLMRMDTLTPDRCEIRGENFHWQGDALVIGIGNGRQAGGGQQLCPTALIND GLLQLRIFTGEELLPALFSTLTQSDDNPNIIDGASAWFDIHAPHEITFNLDGEPLSGQ EFHIEVLPGALRCRLPPDCPLLR" misc_feature 2234014..2234907 /gene="yegS" /locus_tag="STM2140" /note="lipid kinase; Reviewed; Region: PRK13054" /db_xref="CDD:237281" gene complement(2234963..2236029) /gene="fbaB" /locus_tag="STM2141" /db_xref="GeneID:1253662" CDS complement(2234963..2236015) /gene="fbaB" /locus_tag="STM2141" /EC_number="4.1.2.13" /note="similar to E. coli orf, hypothetical protein (AAC75158.1); Blastp hit to AAC75158.1 (374 aa), 96% identity in aa 25 - 374" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] synthase I" /protein_id="NP_461085.1" /db_xref="GeneID:1253662" /translation="MTDIAQLLGKDADSLLQHRCMTIPSDQLYLPGKDYVDRVMIDNN RPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPRYFDPKNIVELAI EAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPTEYDQTLYASVEQAFNMG AVAVGATIYFGSEQSRRQIEEISAAFERAHELGMVTVLWAYLRNSSFKKDGVDYHVSA DLTGQANHLAATIGADIVKQKMAENNGGYKAVNFGYTDDRVYSKLTSDNPIDLVRYQL ANCYMGRAGLINSGGADGGDTDLGDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKL INAVQDVYLDSKVTIA" misc_feature complement(2234966..2236015) /gene="fbaB" /locus_tag="STM2141" /note="class I fructose-bisphosphate aldolase; Region: PRK09250" /db_xref="CDD:236431" misc_feature complement(order(2235014..2235022,2235086..2235094, 2235164..2235166,2235257..2235259)) /gene="fbaB" /locus_tag="STM2141" /note="putative active site; other site" /db_xref="CDD:188645" misc_feature complement(2235257..2235259) /gene="fbaB" /locus_tag="STM2141" /note="catalytic residue [active]" /db_xref="CDD:188645" regulatory complement(2236024..2236029) /regulatory_class="ribosome_binding_site" /gene="fbaB" /locus_tag="STM2141" /note="putative RBS for fbaB; RegulonDB:STMS1H002285" gene 2236257..2237540 /gene="yegT" /locus_tag="STM2142" /db_xref="GeneID:1253663" regulatory 2236257..2236262 /regulatory_class="ribosome_binding_site" /gene="yegT" /locus_tag="STM2142" /note="putative RBS for yegT; RegulonDB:STMS1H002286" CDS 2236269..2237540 /gene="yegT" /locus_tag="STM2142" /note="similar to E. coli putative nucleoside permease protein (AAC75159.1); Blastp hit to AAC75159.1 (425 aa), 94% identity in aa 1 - 425" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_461086.1" /db_xref="GeneID:1253663" /translation="MKTTFKLSFMMFVEWFIWGAWFVPLWLWLNKSGFSAGEIGWSYA CTAIAAILSPILVGSVTDRFFSAQKVLAVLMFAGAVLMYFAAQQTTFAGFFPLLLAYS LTYMPTIALTNSIAFANVPDVERDFPRIRVMGTIGWIASGLACGFLPQMLGYNDISPT NIPLLITAASSALLGVFAFCLPDTPPKSTGKMDIKVMLGLDALVLLRDKNFLVFFFCS FLFAMPLAFYYIFANGYLTEVGMKNATGWMTLGQFSEIFFMLALPFFTKRFGIKKVLL LGLITAAIRYGFFVYGGAETYFTYALLFLGILLHGVSYDFYYVTAYIYVDKKAPVHMR TAAQGLITLCCQGFGSLLGYRLGGVMMEKMFAYPQPVNGLTFNWAGMWTFGAVMIAVI ALLFMIFFRESDKEITAIDDRDIALTQGEVK" misc_feature 2236269..2237519 /gene="yegT" /locus_tag="STM2142" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature order(2236308..2236313,2236320..2236325,2236332..2236334, 2236428..2236430,2236581..2236586,2236590..2236598, 2236605..2236607,2236659..2236661,2236668..2236673, 2236680..2236682,2236920..2236922,2236929..2236934, 2236941..2236949,2236956..2236958,2237031..2237033, 2237043..2237045,2237205..2237210,2237220..2237222, 2237232..2237234,2237280..2237282,2237289..2237294, 2237301..2237306,2237313..2237315) /gene="yegT" /locus_tag="STM2142" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340866" gene 2237524..2238541 /gene="yegU" /locus_tag="STM2143" /db_xref="GeneID:1253664" regulatory 2237524..2237529 /regulatory_class="ribosome_binding_site" /gene="yegU" /locus_tag="STM2143" /note="putative RBS for yegU; RegulonDB:STMS1H002287" CDS 2237537..2238541 /gene="yegU" /locus_tag="STM2143" /note="similar to E. coli orf, hypothetical protein (AAC75160.1); Blastp hit to AAC75160.1 (334 aa), 83% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="putative glycohydrolase" /protein_id="NP_461087.1" /db_xref="GeneID:1253664" /translation="MKAERILGALYGQALGDAMGMPSELWPRTRVKAHFGWIDRFLPG PKENNAACYFNRAEFTDDTAMALCLADALLECEGNIDPEIIGRNILAWAERFDAFNKN VLGPTSKIALNAIRDGKPIAALENNGVTNGAAMRVSPLGCLLPPTNLTAFIAEVALAS SPTHKSDLAVAGAVVVAWAVSRAVNGDTWQSIADSLPAVAHQAQTARITTFSASLSAR LELALNIVRHADGVESASEQLYQIIGAGTSTIESVPCAIAMVELANTDPNRCAVLCAN LGGDTDTIGAMATAICGALHGVSAINPQLKQTLDEVNQLDFARYAVALASYRQRREAL " misc_feature 2237546..2238511 /gene="yegU" /locus_tag="STM2143" /note="ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones]; Region: DraG; COG1397" /db_xref="CDD:441007" gene 2238530..2239503 /gene="yegV" /locus_tag="STM2144" /db_xref="GeneID:1253665" regulatory 2238530..2238535 /regulatory_class="ribosome_binding_site" /gene="yegV" /locus_tag="STM2144" /note="putative RBS for yegV; RegulonDB:STMS1H002288" CDS 2238538..2239503 /gene="yegV" /locus_tag="STM2144" /note="similar to E. coli putative kinase (AAC75161.1); Blastp hit to AAC75161.1 (321 aa), 76% identity in aa 1 - 321" /codon_start=1 /transl_table=11 /product="putative sugar kinase" /protein_id="NP_461088.1" /db_xref="GeneID:1253665" /translation="MNGARLLTLLPTLHTRRPLTVIGAAVIDIIADAWTLPRRGGDIE LQQQSVNVGGCALNIAVALKRLGIDASNALPLGQGVWAERIRRRLAKEGLSSVIDAVE GDNGWCLALVEPDGERTFMSFSGVENQWNADWLSQLRTPRGSLVYLSGYQLASSCGEP LIQWLETVDDVTPFIDFGPRIGDITDDAMARIMACRPIVSLNRQEAIIAAERAGLATD TRTFGEAWVNRFSAPLVVRHDKDGAWYFSAQSSGVVPAFPATVVDTIGAGDSHAGGVL AGLASGWSLADAVLLGNAVASWVVGHRGGDCAPTREALLLAHKNV" misc_feature 2238589..2239449 /gene="yegV" /locus_tag="STM2144" /note="ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase; Region: ribokinase_pfkB_like; cl00192" /db_xref="CDD:469648" misc_feature order(2238709..2238711,2239333..2239335,2239342..2239344) /gene="yegV" /locus_tag="STM2144" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238177" misc_feature order(2239141..2239143,2239246..2239248,2239327..2239329, 2239336..2239341,2239348..2239350) /gene="yegV" /locus_tag="STM2144" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238177" gene complement(2239477..2240235) /gene="yegW" /locus_tag="STM2145" /db_xref="GeneID:1253666" CDS complement(2239477..2240223) /gene="yegW" /locus_tag="STM2145" /note="similar to E. coli putative transcriptional regulator (AAC75162.1); Blastp hit to AAC75162.1 (248 aa), 92% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_461089.1" /db_xref="GeneID:1253666" /translation="MEQAHTRLIAQLNERISAADNTPLYMKFAQTVKDAVRSGILEHG NILPGERDLSQLTGVSRITVRKAMQALEEEGVVTRARGYGTQINNIFEYSLKEARGFS QQVVLRGKKPDTLWVNKRVVSCPDEVAQHLAIPAGSDVFLLKRIRYVDEDAVSIEESW VPAHLIHDVDAIGISLYDYFRRQHIYPQRTRSRVSARMPDDEFQSHIQMDGKVPVLVI KQVALDQQQRPIEYSISYCRSDLYVFVCEE" misc_feature complement(2239489..2240169) /gene="yegW" /locus_tag="STM2145" /note="DNA-binding transcriptional regulator, GntR family [Transcription]; Region: MngR; COG2188" /db_xref="CDD:441791" regulatory complement(2240230..2240235) /regulatory_class="ribosome_binding_site" /gene="yegW" /locus_tag="STM2145" /note="putative RBS for yegW; RegulonDB:STMS1H002289" gene complement(2240259..2241072) /gene="thiD" /locus_tag="STM2146" /db_xref="GeneID:1253667" CDS complement(2240259..2241059) /gene="thiD" /locus_tag="STM2146" /EC_number="2.7.4.7" /note="bifunctional enzyme; phosphomethylpyrimidine kinase. (SW:THID_SALTY); hydroxy-phosphomethylpyrimidine kinase (HMP-P kinase)" /codon_start=1 /transl_table=11 /product="hydroxy-methylpyrimidine kinase (HMP kinase)" /protein_id="NP_461090.1" /db_xref="GeneID:1253667" /translation="MQRINALTIAGTDPSGGAGIQADLKTFSALGAYGCSVITALVAQ NTCGVQSVYRIEPDFVAAQLDSVFSDVRIDTTKIGMLAETDIVEAVAERLQRHHVRNV VLDTVMLAKSGDPLLSPSAIETLRVRLLPQVSLITPNLPEAAALLDAPHARTEQEMLA QGRALLAMGCEAVLMKGGHLEDAQSPDWLFTREGEQRFSAPRVNTKNTHGTGCTLSAA LAALRPRHRSWGETVNEAKAWLSAALAQADTLEVGKGIGPVHHFHAWW" misc_feature complement(2240262..2241059) /gene="thiD" /locus_tag="STM2146" /note="bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed; Region: PRK06427" /db_xref="CDD:180561" misc_feature complement(order(2240859..2240864,2240874..2240876, 2240883..2240885,2240892..2240897,2240901..2240903, 2240907..2240912,2240925..2240939,2240946..2240948, 2240952..2240969,2240976..2240978,2240985..2240990, 2240997..2240999,2241009..2241011,2241015..2241020, 2241024..2241026,2241045..2241047)) /gene="thiD" /locus_tag="STM2146" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238574" misc_feature complement(order(2240421..2240423,2240820..2240822, 2240928..2240930,2240991..2240993,2241027..2241029)) /gene="thiD" /locus_tag="STM2146" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238574" misc_feature complement(order(2240424..2240426,2240430..2240432, 2240532..2240534,2240634..2240636,2240745..2240747)) /gene="thiD" /locus_tag="STM2146" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238574" gene complement(2241046..2241856) /gene="thiM" /locus_tag="STM2147" /db_xref="GeneID:1253668" CDS complement(2241046..2241843) /gene="thiM" /locus_tag="STM2147" /EC_number="2.7.1.50" /note="(SW:THIM_SALTY)" /codon_start=1 /transl_table=11 /product="hydoxyethylthiazole kinase (THZ kinase)" /protein_id="NP_461091.1" /db_xref="GeneID:1253668" /translation="MQPDLHCRTLAAHTLKHFRALSPLTHCMTNDVVQTFTANTLLAL GASPAMVIDPVEARPFAAIANALLINVGTLTASRADAMRAAVESAYDAKTPWTLDPVA VGALEFRRRFCLDLLSLRPAAIRGNASEILALSGMALGGRGVDTTEAALAALPAAQAL ARQIDCIVVVTGEIDYVTNGQRTLSIPGGDPLMTRIVGTGCALSAVVAASCALPGAAL DNVASACCWMKLAGQAAAERSEGPGSFIPAFLDALYHLDVEAANATN" misc_feature complement(2241067..2241813) /gene="thiM" /locus_tag="STM2147" /note="hydroxyethylthiazole kinase; Validated; Region: PRK09355" /db_xref="CDD:236477" misc_feature complement(order(2241625..2241630,2241634..2241636, 2241694..2241696,2241700..2241702,2241718..2241720, 2241730..2241732,2241748..2241750,2241754..2241756)) /gene="thiM" /locus_tag="STM2147" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238575" misc_feature complement(order(2241082..2241084,2241091..2241096, 2241100..2241108,2241112..2241117,2241253..2241264, 2241517..2241522,2241619..2241630,2241664..2241669, 2241676..2241681,2241685..2241696,2241718..2241720, 2241727..2241732,2241736..2241753)) /gene="thiM" /locus_tag="STM2147" /note="multimerization interface [polypeptide binding]; other site" /db_xref="CDD:238575" misc_feature complement(order(2241241..2241243,2241247..2241249, 2241265..2241267,2241319..2241321,2241325..2241327, 2241331..2241333,2241454..2241456,2241463..2241465, 2241469..2241471,2241547..2241549)) /gene="thiM" /locus_tag="STM2147" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238575" regulatory complement(2241067..2241072) /regulatory_class="ribosome_binding_site" /gene="thiM" /locus_tag="STM2147" /note="putative RBS for thiD; RegulonDB:STMS1H002290" regulatory complement(2241851..2241856) /regulatory_class="ribosome_binding_site" /gene="thiM" /locus_tag="STM2147" /note="putative RBS for thiM; RegulonDB:STMS1H002291" gene 2242238..2242567 /locus_tag="STM2148" /db_xref="GeneID:1253669" regulatory 2242238..2242243 /regulatory_class="ribosome_binding_site" /locus_tag="STM2148" /note="putative RBS for STM2148; RegulonDB:STMS1H002292" CDS 2242253..2242567 /locus_tag="STM2148" /note="similar to E. coli orf, hypothetical protein (AAC75168.1); Blastp hit to AAC75168.1 (172 aa), 80% identity in aa 63 - 172" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461092.1" /db_xref="GeneID:1253669" /translation="MKSKLLPCALLLATSFAWAAPATTGIDQYELKSFIADFTHFKPG DTVPQMYRTDEYNIKQWKLRNLPAPDAGTHWTYMGGAYVLINDTDGKIIKAYDGEIFY HR" misc_feature 2242253..2242549 /locus_tag="STM2148" /note="Periplasmic regulator RcnB of Ni and Co efflux [Inorganic ion transport and metabolism]; Region: RcnB; COG5455" /db_xref="CDD:444206" gene complement(2242830..2243848) /gene="stcD" /locus_tag="STM2149" /db_xref="GeneID:1253670" CDS complement(2242830..2243837) /gene="stcD" /locus_tag="STM2149" /note="similar to E. coli putative type-1 fimbrial protein (AAC75169.1); Blastp hit to AAC75169.1 (344 aa), 50% identity in aa 3 - 344" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_461093.1" /db_xref="GeneID:1253670" /translation="MKLFLFIVMLLILPETYAACTGEITYQDNLIIREDFTINPNQSA TYSHNFNDTTCSGTYKITRMDPSDIIVGLYNDTVKLKLKIAWADNNTLTMPFTTGYTV TVEPASSGANVNISAGSGNSVLINGVVSITSASSATQFTAGLRFLGCLLAGRGWNACA ADYNSYLRGAGLYSFDLFVSYDRKQTTCKPEDLTITLPNIALSELYNTGKVSNKNAAD NIRLQCDNLFGNAKQTSRKMTVYLSSSDLIPDSYSVLRGAVNNGVGFILESGGKTVNI SNTAEQGNASTLWKVDQVGTPLNSDMITIPIIASYYVYDRDNIKPGDLKATALIYVKY D" misc_feature complement(2242833..2243837) /gene="stcD" /locus_tag="STM2149" /note="putative fimbrial-like adhesin protein; Region: PRK15252" /db_xref="CDD:237932" regulatory complement(2243843..2243848) /regulatory_class="ribosome_binding_site" /gene="stcD" /locus_tag="STM2149" /note="putative RBS for stcD; RegulonDB:STMS1H002293" gene complement(2243853..2246354) /gene="stcC" /locus_tag="STM2150" /db_xref="GeneID:1253671" CDS complement(2243853..2246342) /gene="stcC" /locus_tag="STM2150" /note="similar to E. coli putative outer membrane protein (AAC75170.1); Blastp hit to AAC75170.1 (826 aa), 74% identity in aa 1 - 826" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_461094.1" /db_xref="GeneID:1253671" /translation="MLRMTPIASLVLLTLFTWQTQAIATETFDTHFMVGGMRDQKITN FHLDENKPIPGQYELDIYVNNQWRGKYDIIVADDPGSTCISTELLKNIGVISDGLQPQ GATDCIALKDVVRSGGYTFNIGVFRLDLSVPQAYVNEVEAGYVLPENWDRGINAFYTS YYASQYYSDYKNSGSSESTYVRFNSGFNLLGWQAHADTTFNKTDGSSGEWKSNTLYLE RGIAELLGTLRAGDQYTSSEIFDSVRFTGVRLFRDMQMLPNSKQNFTPLVQGIAQTNA LVTIEQNGFVVYQKEVPPGPFSIADLQLAGGGADLDVTVREADGSINTWLVPYASVPN MLQPGVSKYDFSAGRSHIEGADNQADFTQISYQYGLNNLLTLYGGTMLSNHYNAFTLG TGWNTRIGAISLDATRAHSKQDNGDVFDGQSYQIAYNKYLTQTLTRFGLAAYRYSSQD YRTFNDHVWANNKNNYRRDKNDVYDIADYYQNDFGRKNTFSANVSQSLPEGWGAVSLS ALWRDYWGRSGTSKDYQISYSNTFQKINYTLSASQTYDEDHNEDKRFNLFISIPFDWG DGITTPRRHLNVSNSTTFDDDGFTSNNIGLTGTAGSRDQFNYGVSVSHQRHDSETTAG TNLTWNTPVATLNGSYSQSSNYTQTGGSISGGVVAWSGGLNLSSRLSDTFAIMQAPGL EGAYVNGQKYRTTNKKGTVVYDNLTPYRENHLMLDVSQSSSETELRGNRKVAAPYRGA VVLVNFDTDQRKPWFIKAQRPDGSPLIFGYDVVDHHGHNVGIVGQGSQLFIRTNDIPP EVSVPVDKEQGLSCSITFGKTVDESKVYICR" misc_feature complement(2243856..2246342) /gene="stcC" /locus_tag="STM2150" /note="fimbrial outer membrane usher protein; Provisional; Region: PRK15217" /db_xref="CDD:185139" regulatory complement(2246349..2246354) /regulatory_class="ribosome_binding_site" /gene="stcC" /locus_tag="STM2150" /note="putative RBS for stcC; RegulonDB:STMS1H002294" gene complement(2246356..2247053) /gene="stcB" /locus_tag="STM2151" /db_xref="GeneID:1253672" CDS complement(2246356..2247039) /gene="stcB" /locus_tag="STM2151" /note="similar to E. coli putative chaperone (AAC75171.1); Blastp hit to AAC75171.1 (239 aa), 64% identity in aa 16 - 239" /codon_start=1 /transl_table=11 /product="putative periplasmic chaperone protein" /protein_id="NP_461095.1" /db_xref="GeneID:1253672" /translation="MKILSAVLLSAIILPAHAGIVIYGTRVIYPAEKKEVVVQLVNQG EQASLVQSWIDDGNTSLPPEKIQVPFMLTPPVARVAAESGQQIKIKKMPNSLPDNKES LFYLNVLDIPPNSQENAGKNVLKFAMQNRIKLIWRPSRIAAVTKDSFQRIGLFRSNKA VIMKNDTANWITVTDVKAGNTKINDQTIMLPPLSTQNINMKYASTSQYEVTIIDDNGN YISSKMNVK" misc_feature complement(2246359..2247039) /gene="stcB" /locus_tag="STM2151" /note="putative fimbrial assembly chaperone protein StcB; Provisional; Region: PRK15253" /db_xref="CDD:185165" regulatory complement(2247048..2247053) /regulatory_class="ribosome_binding_site" /gene="stcB" /locus_tag="STM2151" /note="putative RBS for stcB; RegulonDB:STMS1H002295" gene complement(2247095..2247637) /gene="stcA" /locus_tag="STM2152" /db_xref="GeneID:1253673" CDS complement(2247095..2247625) /gene="stcA" /locus_tag="STM2152" /note="similar to E. coli putative fimbrial-like protein (AAC75172.1); Blastp hit to AAC75172.1 (180 aa), 33% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="putative fimbrial-like protein" /protein_id="NP_461096.1" /db_xref="GeneID:1253673" /translation="MKRSLIAASVLSAVFMSAGAFAVDEYDSGVLNINGKVVGTTCQF LGTNTAEIRLNEIGADKIINLTPGQIYDAVTNQTQMPLKIKCQQGVAPRITFSSTQFD SHDITFNNGSAKGVGFAVYYGSTDNQIDPETGVTLDPNSSGEYDLTFLARYARLDGDV ASGDVSSTLTLTVVTD" misc_feature complement(2247098..2247625) /gene="stcA" /locus_tag="STM2152" /note="fimbrial protein YehD; Region: PRK15220" /db_xref="CDD:237928" regulatory complement(2247632..2247637) /regulatory_class="ribosome_binding_site" /gene="stcA" /locus_tag="STM2152" /note="putative RBS for stcA; RegulonDB:STMS1H002296" gene complement(2247904..2248203) /gene="yehE" /locus_tag="STM2153" /db_xref="GeneID:1253674" CDS complement(2247904..2248185) /gene="yehE" /locus_tag="STM2153" /note="similar to E. coli orf, hypothetical protein (AAC75173.1); Blastp hit to AAC75173.1 (93 aa), 48% identity in aa 1 - 93" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_461097.1" /db_xref="GeneID:1253674" /translation="MKKYLLMGIIVSAYGISVPVFASDTATLTISGKVTAPTCSTEVV NAQLQQRCGNTIHVSTLQTPAATPMRGVTTQLYTVPGDSTRQIVVNHYD" misc_feature complement(2247907..2248185) /gene="yehE" /locus_tag="STM2153" /note="Protein of unknown function (DUF2574); Region: DUF2574; pfam10836" /db_xref="CDD:287772" regulatory complement(2248198..2248203) /regulatory_class="ribosome_binding_site" /gene="yehE" /locus_tag="STM2153" /note="putative RBS for yehE; RegulonDB:STMS1H002297" gene complement(2248463..2249583) /gene="mrp" /locus_tag="STM2154" /db_xref="GeneID:1253675" CDS complement(2248463..2249572) /gene="mrp" /locus_tag="STM2154" /note="similar to E. coli putative ATPase (AAC75174.1); Blastp hit to AAC75174.1 (379 aa), 96% identity in aa 11 - 379" /codon_start=1 /transl_table=11 /product="putative ATP-binding protein" /protein_id="NP_461098.1" /db_xref="GeneID:1253675" /translation="MNEQSQAKSPDTLRAMVAGTLANFQHPTLKHNLTTLKALHHVAW MDDTLHVELVMPFVWNSAFEVLKEQCSADLLRITGAKAIDWKLSYNIATLKRVKNQPG INGVKNIIAVSSGKGGVGKSSTAVNLALALAAEGAKVGVLDADIYGPSIPTMLGAEDQ RPTSPDGTHMAPIMSHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDY LVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVE NMSMHICSNCGHHEPIFGTGGAQKLAEKYHTQLLGQMPLHISLREDLDRGTPTVVSRP ESEFTAIYRELADRVAAQLYWQGEVIPGEIAFRAV" misc_feature complement(2248466..2249572) /gene="mrp" /locus_tag="STM2154" /note="iron-sulfur cluster carrier protein ApbC; Region: PRK11670" /db_xref="CDD:183270" regulatory complement(2249578..2249583) /regulatory_class="ribosome_binding_site" /gene="mrp" /locus_tag="STM2154" /note="putative RBS for mrp; RegulonDB:STMS1H002298" gene 2249717..2251770 /gene="metG" /locus_tag="STM2155" /db_xref="GeneID:1253676" regulatory 2249717..2249722 /regulatory_class="ribosome_binding_site" /gene="metG" /locus_tag="STM2155" /note="putative RBS for metG; RegulonDB:STMS1H002299" CDS 2249737..2251770 /gene="metG" /locus_tag="STM2155" /EC_number="6.1.1.10" /note="similar to E. coli methionine tRNA synthetase (AAC75175.1); Blastp hit to AAC75175.1 (677 aa), 95% identity in aa 1 - 677" /codon_start=1 /transl_table=11 /product="methionine tRNA synthetase" /protein_id="NP_461099.1" /db_xref="GeneID:1253676" /translation="MTQVAKKILVTCALPYANGSIHLGHMLEHIQADVWVRYQRMRGH EVNFICADDAHGTPIMLKAQQLGITPEQMIGEMSQEHQTDFAGFNISYDNYHSTHSDE NRELSELIYTRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSADQYGDNCE VCGATYSPTELIEPKSVVSGATPVMRDSEHFFFDLPSFSEMLQAWTRSGALQEQVANK MQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGYMGSFKNLCDKRGDTT SFDEYWKKDSDAELYHFIGKDIVYFHSLFWPAMLEGSHFRKPTNLFVHGYVTVNGAKM SKSRGTFIKASTWLKHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVN LASRNAGFINKRFDGVLAAELADPQLYKTFTDAAAVIGEAWESREFGKAIREIMALAD IANRYVDEQAPWVVAKQEGRDADLQAICSMGINLFRVLMTYLKPVLPTLSERVEAFLN SELNWDAIEQPLLGHKVNTFKALYNRIDMKQVEALVESSKEEVKAAAAPVTGPLADFP IQETITFDDFAKIDLRVALIENAEFVDGSDKLLRLTLDLGGEKRNVFSGIRSAYPDPQ ALIGRQTVMVANLAPRKMRFGVSEGMVMAAGPGGKDIFLLSPDDGAKPGQQVK" misc_feature 2249752..2251767 /gene="metG" /locus_tag="STM2155" /note="methionyl-tRNA synthetase; Reviewed; Region: metG; PRK00133" /db_xref="CDD:234655" gene 2251999..2252469 /gene="yehR" /locus_tag="STM2156" /db_xref="GeneID:1253677" regulatory 2251999..2252004 /regulatory_class="ribosome_binding_site" /gene="yehR" /locus_tag="STM2156" /note="putative RBS for yehR; RegulonDB:STMS1H002300" CDS 2252011..2252469 /gene="yehR" /locus_tag="STM2156" /note="similar to E. coli orf, hypothetical protein (AAC75184.1); Blastp hit to AAC75184.1 (157 aa), 72% identity in aa 5 - 157" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_461100.1" /db_xref="GeneID:1253677" /translation="MKISGKLLSAALASVLVFSLAGCGDKEESKTFNANLAGTEISIT YTYKGDKIIKQTSESKISYATVGAKTKEDAAKILDPLSAKYKNIAGVEEKLTYEDTYA QENVSVDMEKVDFKALQQISGTMVSGDTSKGISMKQTQTLLEAAGFKEAK" misc_feature 2252011..2252466 /gene="yehR" /locus_tag="STM2156" /note="Uncharacterized lipoprotein YehR, DUF1307 family [Function unknown]; Region: YehR; COG4808" /db_xref="CDD:443836" gene 2252641..2253171 /locus_tag="STM2156A" /db_xref="GeneID:1253678" CDS 2252641..2253171 /locus_tag="STM2156A" /codon_start=1 /transl_table=11 /product="putative 16.9 kd lipoprotein precursor" /protein_id="NP_461101.1" /db_xref="GeneID:1253678" /translation="MQVLRLMALPLFALSLSVSITGCDQKNDTLQGKQNNMTAFIKKI AASKESEETQRYVGNLNGIEIKLTYYYKGDIVLRQISEHKLLYKTLKANNKEEAQKML SQVGEAYQGMPGLTERIDYYDSYATEYVDINFTQAKISDLCKLPGSSIDNCSAYYLSM IRSQKLLEESGYHRIN" misc_feature 2252641..2253168 /locus_tag="STM2156A" /note="Uncharacterized lipoprotein YehR, DUF1307 family [Function unknown]; Region: YehR; COG4808" /db_xref="CDD:443836" gene complement(2253228..2253703) /gene="yehS" /locus_tag="STM2157" /db_xref="GeneID:1253679" CDS complement(2253228..2253695) /gene="yehS" /locus_tag="STM2157" /note="similar to E. coli orf, hypothetical protein (AAC75185.1); Blastp hit to AAC75185.1 (156 aa), 90% identity in aa 1 - 155" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461102.1" /db_xref="GeneID:1253679" /translation="MLSNDILRSVRYILKANNTDLARILALGNVDATPEQIAIWLRKE EEEGFQRCPDIVLSSFLNGLIYEKRGKDEAAPALTAERRINNNIVLKKLRIAFSLKTD DILAILTGQLFRVSMPEITAMMRAPDHKNFRECGDQFMRYFLRGLAAREHAAK" misc_feature complement(2253240..2253695) /gene="yehS" /locus_tag="STM2157" /note="Uncharacterized conserved protein YehS, DUF1456 family [Function unknown]; Region: YehS; COG4807" /db_xref="CDD:443835" regulatory complement(2253698..2253703) /regulatory_class="ribosome_binding_site" /gene="yehS" /locus_tag="STM2157" /note="putative RBS for yehS; RegulonDB:STMS1H002301" gene complement(2253742..2254472) /gene="yehT" /locus_tag="STM2158" /db_xref="GeneID:1253680" CDS complement(2253742..2254461) /gene="yehT" /locus_tag="STM2158" /note="similar to E. coli orf, hypothetical protein (AAC75186.1); Blastp hit to AAC75186.1 (244 aa), 94% identity in aa 6 - 244" /codon_start=1 /transl_table=11 /product="putative regulator" /protein_id="NP_461103.1" /db_xref="GeneID:1253680" /translation="MIKVLIVDDEPLARENLRILLQGQDDIEIVGECANAVEAIGAVH KLRPDVLFLDIQMPRISGLEMVGMLDPEHRPYIVFLTAFDEYAIKAFEEHAFDYLLKP IEEKRLEKTLHRLRQERSKQDVSLLPENQQALKFIPCTGHSRIYLLQMDDVAFVSSRM SGVYVTSSEGKEGFTELTLRTLESRTPLLRCHRQFLVNMAHLQEIRLEDNGQAELILR NGLTVPVSRRYLKSLKEAIGL" misc_feature complement(2253745..2254461) /gene="yehT" /locus_tag="STM2158" /note="two-component system response regulator BtsR; Region: PRK11697" /db_xref="CDD:236956" gene complement(2254458..2256156) /gene="yehU" /locus_tag="STM2159" /db_xref="GeneID:1253681" CDS complement(2254458..2256143) /gene="yehU" /locus_tag="STM2159" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC75187.1); Blastp hit to AAC75187.1 (561 aa), 91% identity in aa 1 - 561" /codon_start=1 /transl_table=11 /product="putative sensor/kinase in regulatory system" /protein_id="NP_461104.1" /db_xref="GeneID:1253681" /translation="MYEFNLVLLLLQQMCVFLVIAWLMSKTRLFIPLMQVTVRLPHKL LCYVTFSIFCIMGTYFGLHIEDSIANTRAIGAVMGGLLGGPVVGGLVGLTGGLHRYSM GGMTALSCMISTIVEGLLGGLVHSVLIRRGRPDKVFSPLTAGAITCIAELVQMLIILL IARPFDDALHLVSNIAAPMMVTNTVGAALFMRILLDKRAMFEKYTSAFSATALKVAAS TEGILRQGFNEVNSMKVAQVLYQELDIGAVAITDREKLLAFTGIGDDHHLPGKPISSG YTLKAIETGEVVYADGNEVPYRCSLHPQCKLGSTLVIPLRGENQRVMGTIKLYEAKNR LFSSINRTLGEGIAQLLSAQILAGQYERQKALLTQSEIKLLHAQVNPHFLFNALNTIK AVIRRDSEQASQLVQYLSTFFRKNLKRPSEIVTLADEIEHVNAYLQIEKARFQSRLQV QLDVPSTLSRQKLPAFTLQPIVENAIKHGTSQLLDTGNVAIRARREGQHLMLDIEDNA GLYQPSAGSSGLGMSLVDKRLREHFGDDYGISVACEPDCFTRITLRLPLEEDA" misc_feature complement(2255556..2256065) /gene="yehU" /locus_tag="STM2159" /note="5TMR of 5TMR-LYT; Region: 5TM-5TMR_LYT; pfam07694" /db_xref="CDD:429599" misc_feature complement(2255085..2255498) /gene="yehU" /locus_tag="STM2159" /note="GAF domain; Region: GAF_2; pfam13185" /db_xref="CDD:433019" misc_feature complement(2254464..>2255141) /gene="yehU" /locus_tag="STM2159" /note="Sensor histidine kinase, LytS/YehU family [Signal transduction mechanisms]; Region: LytS; COG3275" /db_xref="CDD:442506" regulatory complement(2254467..2254472) /regulatory_class="ribosome_binding_site" /gene="yehT" /locus_tag="STM2158" /note="putative RBS for yehT; RegulonDB:STMS1H002302" regulatory complement(2256151..2256156) /regulatory_class="ribosome_binding_site" /gene="yehU" /locus_tag="STM2159" /note="putative RBS for yehU; RegulonDB:STMS1H002303" gene 2256354..2257097 /gene="yehV" /locus_tag="STM2160" /db_xref="GeneID:1253682" regulatory 2256354..2256359 /regulatory_class="ribosome_binding_site" /gene="yehV" /locus_tag="STM2160" /note="putative RBS for yehV; RegulonDB:STMS1H002304" CDS 2256366..2257097 /gene="yehV" /locus_tag="STM2160" /note="similar to E. coli putative transcriptional regulator (AAC75188.1); Blastp hit to AAC75188.1 (243 aa), 85% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="putative transcriptional repressor (MerR family)" /protein_id="NP_461105.1" /db_xref="GeneID:1253682" /translation="MALYTIGEVALLCDINPVTLRAWQRRYGLLKPQRTDGGHRLFND ADIDRIREIKRWIDNGVQVSKVKVLLSSDSSEQPNGWREQQEILLHYLQSSNLHSLRL WVKERGQDYPAQTLTTNLFVPLRRRLQCQQPALQALLGILDGILINYIALCLASARKK QGKDALVIGWNIHDTTRLWLEGWVASQQGWRIDVLAHSLSQFRPELFDGKTLLVWCGE NQTLAQQQQLLAWRAQGRDIHPLGV" misc_feature 2256366..2257094 /gene="yehV" /locus_tag="STM2160" /note="HTH-type transcriptional regulator MlrA; Region: PRK15043" /db_xref="CDD:185003" gene 2257150..2257264 /locus_tag="STM2161" /db_xref="GeneID:1253683" regulatory 2257150..2257155 /regulatory_class="ribosome_binding_site" /locus_tag="STM2161" /note="putative RBS for STM2161; RegulonDB:STMS1H002305" CDS 2257157..2257264 /locus_tag="STM2161" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461106.1" /db_xref="GeneID:1253683" /translation="MRVAKIGVIALFLLMAIGGIGGVMLAGYSFILRAG" misc_feature 2257157..2257261 /locus_tag="STM2161" /note="protein YohO; Region: PRK13681" /db_xref="CDD:184238" gene complement(2257245..2257992) /gene="yehW" /locus_tag="STM2162" /db_xref="GeneID:1253684" CDS complement(2257245..2257976) /gene="yehW" /locus_tag="STM2162" /note="similar to E. coli putative transport system permease protein (AAC75189.1); Blastp hit to AAC75189.1 (243 aa), 84% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="putative ABC-type proline/glycine betaine transport system, permease component" /protein_id="NP_461107.1" /db_xref="GeneID:1253684" /translation="MKRLCDPLLWLIVLFLLLLFGLPYSQPFFAALFPDLPRPVYQQE SFAALALAHFWLVGISSLFAVVVGVGAGIAVTRESGKEFRPLVETIAAVGQTFPPVAV LAIAVPVMGFGQQPAIIALILYGVLPILQATLAGLGAVPASVMSVASGMGMSRRQQLY QVELPLAAPVILAGIRTSVIINIGTATIASTVGASTLGTPIIIGLSGFNTAYVIQGAL LVALAAIIIDRLFERLTRVLTRHAK" misc_feature complement(2257251..2257853) /gene="yehW" /locus_tag="STM2162" /note="ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]; Region: OpuBB; COG1174" /db_xref="CDD:440787" gene complement(2257960..2258920) /gene="yehX" /locus_tag="STM2163" /db_xref="GeneID:1253685" CDS complement(2257960..2258907) /gene="yehX" /locus_tag="STM2163" /note="similar to E. coli putative ATP-binding component of a transport system (AAC75190.1); Blastp hit to AAC75190.1 (308 aa), 87% identity in aa 1 - 307" /codon_start=1 /transl_table=11 /product="putative ABC-type proline/glycine betaine transport system, ATPase component" /protein_id="NP_461108.1" /db_xref="GeneID:1253685" /translation="MIEFNHVSKTFGDQQAVSDLNLHFSEGSFSVLIGTSGSGKSTTL KMINRLVEHDSGTIRFAGEEIRSLPVLELRRRMGYAIQSIGLFPHWTVAQNIATVPQL QKWSRARINDRIDELMALLGLESALRDRYPHQLSGGQQQRVGVARALAADPQVLLMDE PFGALDPVTRGALQQEMTRIHQLLGRTIVLVTHDIDEALRLADHLVLMDGGHVIQQGS PLSMLTSPENDFVQAFFGRSELGVRLLSLRSVGDYVRRHEQLSGDALVEEMTLRDALS MFVARRCDVLPVANQQGEPCGTLHFRDLLSETSPRETTV" misc_feature complement(2257993..2258907) /gene="yehX" /locus_tag="STM2163" /note="ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]; Region: OpuBA; COG1125" /db_xref="CDD:440742" regulatory complement(2257987..2257992) /regulatory_class="ribosome_binding_site" /gene="yehW" /locus_tag="STM2162" /note="putative RBS for yehW; RegulonDB:STMS1H002306" gene complement(2258900..2260089) /gene="yehY" /locus_tag="STM2164" /db_xref="GeneID:1253686" CDS complement(2258900..2260069) /gene="yehY" /locus_tag="STM2164" /note="similar to E. coli putative transport system permease protein (AAC75191.1); Blastp hit to AAC75191.1 (385 aa), 76% identity in aa 6 - 385" /codon_start=1 /transl_table=11 /product="putative ABC-type proline/glycine betaine transport system, permease component" /protein_id="NP_461109.1" /db_xref="GeneID:1253686" /translation="MSDAAKKITVNRVLLLLVVLTLLAVALPFINYAPNRLVSGEGRQ LWEIWPATIWMLTGAGCALFTLCFVPGKRGSVLTLMMAQTLFIVMLWGVGRAATQLAQ EGSPLARTSLGSGLWLGLGLMLLACSDAIRRITTGPLWRWLLHAQIVIVPLALLFSGT FDNLSLLKEYTNRQDVFDAALVQHLMLLAGTVLPALAIGLPLGVWCYFSASRQGPVFT VLNVIQTIPSVALFGLLIAPLAGLVKQFPWLAAFGVAGTGMTPALIALVLYALLPLVR GVVAGLNQVPRDVLESARAMGMSSGQRFRHVQLPLALPVFLRSLRVVMVQTVGMAVVA ALIGAGGFGALVFQGLLSSAIDLVLLGVIPVIALAVVIDALFDLWIAFLKGATDD" misc_feature complement(2258921..2259583) /gene="yehY" /locus_tag="STM2164" /note="ABC-type proline/glycine betaine transport system, permease component [Amino acid transport and metabolism]; Region: OpuBB; COG1174" /db_xref="CDD:440787" regulatory complement(2258915..2258920) /regulatory_class="ribosome_binding_site" /gene="yehX" /locus_tag="STM2163" /note="putative RBS for yehX; RegulonDB:STMS1H002307" gene complement(2260073..2261002) /gene="yehZ" /locus_tag="STM2165" /db_xref="GeneID:1253687" CDS complement(2260073..2260990) /gene="yehZ" /locus_tag="STM2165" /note="possibly glycine betaine choline transport for osmoprotection; similar to E. coli putative transport system permease protein (AAC75192.1); Blastp hit to AAC75192.1 (305 aa), 88% identity in aa 1 - 305" /codon_start=1 /transl_table=11 /product="putative ABC superfamily transport protein (bind_prot)" /protein_id="NP_461110.1" /db_xref="GeneID:1253687" /translation="MTISKLWVSSLALLATVSLPLQAASPVTVGSKIDTEGALLGNMI LQVLESHGVKTVNKIQLGTTPVVRGAITAGELDIYPEYTGNGAFFFKDENDPAWKNAK QGFEKVKKLDAEQNKLVWLTPAPANNTWTIAIRQDIAEKNKLSSLADLSRYLKEGGTF KLAASAEFIERADALPAFEKAYDFTLNQNQLLSLAGGDTAVTIKAAAQQTSGVNAAMA YGTDGPVAALGLQTLSDPKGVQPIYAPAPVVRESVLQAYPQIADWLQPVFASLDEKTL QQLNARIAVEGLDAKKVAADYLRQKGWVK" misc_feature complement(2260097..2260915) /gene="yehZ" /locus_tag="STM2165" /note="Substrate-binding domain OsmF of an osmoregulated ABC-type transporter; the type 2 periplasmic-binding protein fold; Region: PBP2_OsmF; cd13616" /db_xref="CDD:270334" misc_feature complement(order(2260262..2260264,2260334..2260336, 2260601..2260603,2260607..2260609,2260736..2260738, 2260745..2260750,2260889..2260891,2260895..2260897)) /gene="yehZ" /locus_tag="STM2165" /note="putative chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270334" regulatory complement(2260084..2260089) /regulatory_class="ribosome_binding_site" /gene="yehZ" /locus_tag="STM2165" /note="putative RBS for yehY; RegulonDB:STMS1H002308" regulatory complement(2260997..2261002) /regulatory_class="ribosome_binding_site" /gene="yehZ" /locus_tag="STM2165" /note="putative RBS for yehZ; RegulonDB:STMS1H002309" gene complement(2261171..2263480) /gene="bglX" /locus_tag="STM2166" /db_xref="GeneID:1253688" CDS complement(2261171..2263468) /gene="bglX" /locus_tag="STM2166" /EC_number="3.2.1.21" /note="periplasmic beta-glucosidase precursor. (SW:BGLX_SALTY)" /codon_start=1 /transl_table=11 /product="periplasmic beta-D-glucoside glucohydrolase" /protein_id="NP_461111.1" /db_xref="GeneID:1253688" /translation="MKWLCSVGVAVSLAMQPALAENLFGNHPLTPEARDAFVTDLLKK MTVDEKIGQLRLISVGPDNPKEAIREMIKDGQVGAIFNTVTRQDIRQMQDQVMALSRL KIPLFFAYDVVHGQRTVFPISLGLASSFNLDAVRTVGRVSAYEAADDGLNMTWAPMVD VSRDPRWGRASEGFGEDTYLTSIMGETMVKAMQGKSPADRYSVMTSVKHFAAYGAVEG GKEYNTVDMSSQRLFNDYMPPYKAGLDAGSGAVMVALNSLNGTPATSDSWLLKDVLRD EWGFKGITVSDHGAIKELIKHGTAADPEDAVRVALKAGVDMSMADEYYSKYLPGLIKS GKVTMAELDDATRHVLNVKYDMGLFNDPYSHLGPKESDPVDTNAESRLHRKEAREVAR ESVVLLKNRLETLPLKKSGTIAVVGPLADSQRDVMGSWSAAGVANQSVTVLAGIQNAV GDGAKILYAKGANITNDKGIVDFLNLYEEAVKIDPRSPQAMIDEAVQAAKQADVVVAV VGESQGMAHEASSRTNITIPQSQRDLITALKATGKPLVLVLMNGRPLALVKEDQQADA ILETWFAGTEGGNAIADVLFGDYNPSGKLPISFPRSVGQIPVYYSHLNTGRPYNPEKP NKYTSRYFDEANGPLYPFGYGLSYTTFTVSDVTLSSPTMQRDGKVTASVEVTNTGKRE GATVIQMYLQDVTASMSRPVKQLKGFEKITLKPGERKTVSFPIDIEALKFWNQQMKYD AEPGKFNVFIGVDSARVKQGSFELL" misc_feature complement(2261174..2263468) /gene="bglX" /locus_tag="STM2166" /note="beta-glucosidase BglX; Region: PRK15098" /db_xref="CDD:185053" regulatory complement(2263475..2263480) /regulatory_class="ribosome_binding_site" /gene="bglX" /locus_tag="STM2166" /note="putative RBS for bglX; RegulonDB:STMS1H002310" gene 2263723..2265465 /gene="dld" /locus_tag="STM2167" /db_xref="GeneID:1253689" regulatory 2263723..2263728 /regulatory_class="ribosome_binding_site" /gene="dld" /locus_tag="STM2167" /note="putative RBS for dld; RegulonDB:STMS1H002311" CDS 2263735..2265465 /gene="dld" /locus_tag="STM2167" /EC_number="1.1.1.28" /note="similar to E. coli D-lactate dehydrogenase, FAD protein, NADH independent (AAC75194.1); Blastp hit to AAC75194.1 (571 aa), 91% identity in aa 1 - 569" /codon_start=1 /transl_table=11 /product="NADH independent D-lactate dehydrogenase" /protein_id="NP_461112.1" /db_xref="GeneID:1253689" /translation="MSSITMTDNKTFLNELARLVGHSHLLTDPAKTARYRKGFRSGQG DALAVVFPGSLLELWRVLNACVNADKIILMQAANTGLTEGSTPNGNDYDRDIVIISTQ RLDKLHLLDNGQQVLAWPGTTLYALEKALKPLGREPHSVIGSSCIGASVIGGICNNSG GSLVQRGPAYTEMSLFARIDDQGKLQLVNHLGIDLGHTPEQILSKLDDERIKDEDVRH DGRHAHDHDYVTRVRDINADTPARYNADPDRLFESSGCAGKLAVFAVRLDTFAAEKNQ QVFYIGTNQPAVLTEIRRHILANFDNLPVAGEYMHRDIYDIAEQYGKDTFLMIDKLGT DKMPFFFTLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHL LLKMAGDGVAEAQRWLNEFFKSAEGGFFTCTPEEGSKAFLHRFAAAGAAIRYQAVHAD EVEDILALDIALRRNDTDWFEHLPPEIDSQLVHKLYYGHFMCHVFHQDYIVKKGVDVH ALKAQMLELLQARGAQYPAEHNVGHLYKAPETLTRFYRQNDPTNSMNPGIGKTSKRKF WQENTPDETH" misc_feature 2263756..2265441 /gene="dld" /locus_tag="STM2167" /note="D-lactate dehydrogenase; Provisional; Region: PRK11183" /db_xref="CDD:236872" gene complement(2265523..2266483) /gene="pbpG" /locus_tag="STM2168" /db_xref="GeneID:1253690" CDS complement(2265523..2266470) /gene="pbpG" /locus_tag="STM2168" /note="penicillin-binding protein 7 and penicillin-binding protein 8; similar to E. coli penicillin-binding protein 7 (AAC75195.1); Blastp hit to AAC75195.1 (313 aa), 92% identity in aa 4 - 313" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine endopeptidase" /protein_id="NP_461113.1" /db_xref="GeneID:1253690" /translation="MLKFRASFLSLALMLAVPFAPQAVAKTAATTAASQPEIASGSAM IVDLNTNKVIYSNHPDLVRPIASITKLMTAMVVLDARLPLDEILKVDISQTPEMKGVY SRVRLNSEISRKNMLLLALMSSENRAAASLAHYYPGGYNAFIKAMNAKAKALGMTHTR FVEPTGLSIHNVSTARDLTKLLIATKQYPLIGQLSTTREDMATFSHPAYTLPFRNTNH LVYRDNWNIQLTKTGFTNAAGHCLVMRTVINNKPVALVVMDAFGKYTHFADASRLRTW IETGKVMPVPAAALSYKKQKAAQMAAASASAGAQTAQND" misc_feature complement(2265595..2266467) /gene="pbpG" /locus_tag="STM2168" /note="D-alanyl-D-alanine endopeptidase; Provisional; Region: pbpG; PRK11669" /db_xref="CDD:236952" regulatory complement(2266478..2266483) /regulatory_class="ribosome_binding_site" /gene="pbpG" /locus_tag="STM2168" /note="putative RBS for pbpG; RegulonDB:STMS1H002312" gene complement(2266636..2267234) /gene="yohC" /locus_tag="STM2169" /db_xref="GeneID:1253691" CDS complement(2266636..2267223) /gene="yohC" /locus_tag="STM2169" /note="similar to E. coli orf, hypothetical protein (AAC75196.1); Blastp hit to AAC75196.1 (203 aa), 91% identity in aa 9 - 203" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_461114.1" /db_xref="GeneID:1253691" /translation="MNHVWGLFSHPDREMQVIKSENETVSHHYTHHVLLMAAIPVVCA FIGTTQIGWNFGDGNVLQLSLFTAFALAVLFYGVMLAGVAVMGRVIWWMARNYPQRPS LARCMVFAGYVATPLFLSGLVALYPLVWLCALVGAVALFYTGYLLYLGIPTFLNINRE EGLSFSSSTLAIGVLVLEVLLAITVILWGYGYRLF" misc_feature complement(2266693..2267211) /gene="yohC" /locus_tag="STM2169" /note="Yip1 domain; Region: Yip1; pfam04893" /db_xref="CDD:461468" regulatory complement(2267229..2267234) /regulatory_class="ribosome_binding_site" /gene="yohC" /locus_tag="STM2169" /note="putative RBS for yohC; RegulonDB:STMS1H002313" gene 2267347..2267951 /gene="yohD" /locus_tag="STM2170" /db_xref="GeneID:1253692" regulatory 2267347..2267352 /regulatory_class="ribosome_binding_site" /gene="yohD" /locus_tag="STM2170" /note="putative RBS for yohD; RegulonDB:STMS1H002314" CDS 2267355..2267951 /gene="yohD" /locus_tag="STM2170" /note="similar to E. coli orf, hypothetical protein (AAC75197.1); Blastp hit to AAC75197.1 (204 aa), 81% identity in aa 13 - 197" /codon_start=1 /transl_table=11 /product="putative DedA family, membrane protein" /protein_id="NP_461115.1" /db_xref="GeneID:1253692" /translation="MLNAGGGLRMDINTLITHYGYAALVIGSMAEGETVTLLGGVAAH QGLLKFPLVAAAVALGGMMGDQLLYLLGRCYGGKILRRFPRYHTKIRRAQKMIQRHPY LFVIGTRFMYGFRVVGPLLIGASRLPPKIFLPLNIVGALIWALLFTTLGYLGGEVIAP WLHDLDQHLRHGVWLILAIVLVVGVRWWLKRRGKAEAR" misc_feature 2267388..2267948 /gene="yohD" /locus_tag="STM2170" /note="Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family [Cell wall/membrane/envelope biogenesis]; Region: DedA; COG0586" /db_xref="CDD:440351" gene complement(2268000..2268768) /gene="yohF" /locus_tag="STM2171" /db_xref="GeneID:1253693" CDS complement(2268000..2268761) /gene="yohF" /locus_tag="STM2171" /EC_number="1.-.-.-" /note="similar to E. coli putative oxidoreductase (AAC75198.1); Blastp hit to AAC75198.1 (253 aa), 80% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_461116.1" /db_xref="GeneID:1253693" /translation="MTKVAIVTASDSGIGKACALLLAQNGFDIGITWHSDERGAQETA KKAAQFGVRAETIHLDLSQLPEGAQAIEHLIQRLGRVDVLVNNAGAMTKSAFIDMPFT QWRQIFTVDVDGAFLCAQIAARHMIKQGEGGRIINITSVHEHTPLPQASAYTAAKHAL GGLTKSMALELIEHHILVNAVAPGAIATPMNDMDDSDIEPGSEPSIPIARPGSTHEIA SLVAWLCSEGASYTTGQSLIVDGGFMLANPQFNAK" misc_feature complement(2268003..2268761) /gene="yohF" /locus_tag="STM2171" /note="SDR family oxidoreductase; Region: PRK12743" /db_xref="CDD:237187" regulatory complement(2268763..2268768) /regulatory_class="ribosome_binding_site" /gene="yohF" /locus_tag="STM2171" /note="putative RBS for yohF; RegulonDB:STMS1H002315" gene complement(2268827..2270275) /gene="yohG" /locus_tag="STM2172" /db_xref="GeneID:1253694" CDS complement(2268827..2270263) /gene="yohG" /locus_tag="STM2172" /note="similar to E. coli putative channel/filament proteins (AAC75199.1); Blastp hit to AAC75199.1 (398 aa), 85% identity in aa 1 - 396" /codon_start=1 /transl_table=11 /product="putative outer membrane efflux protein" /protein_id="NP_461117.1" /db_xref="GeneID:1253694" /translation="MNRNSFLAATASLPLFILLAGCAPMHDTRQSLTQQTPSSHVDSS LPAALKNGWPDSQWWKAYHDAQLDALIDNAIQHSPDMQVAEQRIQLAEAQAKAVEAQD GPQLDFSADIERQRMSAEGLMGPFAITDPAAGTTGPWYTNGTFGLTAGWDLDLWGKNR AEVTARIGAVKAREAEQEQTRQLLASGVARLYWEWQTQAALKNVLMQIEHEQQNVVAV NRELYQHGITSSVEGVETDIDASKTQQQLNDVNGKMKVIEARLSALTNTQSAALKLRQ VSLPAVESQLPSQLGYSLLARRADLQAAHWYIESSLSSIDAAKAAFYPDINLMAFLQQ DALHLSDLFRHSAQQYGITGGLTLPIFDSGRLNANLDIAKAQSNLSIANYNKAVVDAV NDVARAASQVETLAQKNQHQQQIEHDAQRVVGLAQARFNAGIIAGSRVSEAKIPALRE QCNGLLLQGQWLDASIQLTSALGGGYHS" misc_feature complement(2268830..2270263) /gene="yohG" /locus_tag="STM2172" /note="multidrug resistance outer membrane protein MdtQ; Provisional; Region: PRK11459" /db_xref="CDD:183143" regulatory complement(2270270..2270275) /regulatory_class="ribosome_binding_site" /gene="yohG" /locus_tag="STM2172" /note="putative RBS for yohG; RegulonDB:STMS1H002316" gene 2270454..2270651 /locus_tag="STM2173" /db_xref="GeneID:1253695" CDS 2270454..2270651 /locus_tag="STM2173" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_448577.3" /db_xref="GeneID:1253695" /translation="MNDFAAIRASSLHELNVAAPNKAADGLILSYTLFVFTNKGTNNE NSSMGNLNYFSDWAVGGNGRV" gene complement(2270722..2271672) /gene="yohI" /locus_tag="STM2174" /db_xref="GeneID:1253696" CDS complement(2270722..2271660) /gene="yohI" /locus_tag="STM2174" /note="similar to E. coli putative regulator protein (AAC75201.1); Blastp hit to AAC75201.1 (315 aa), 89% identity in aa 1 - 312" /codon_start=1 /transl_table=11 /product="putative nitrogen regulation protein" /protein_id="NP_461119.1" /db_xref="GeneID:1253696" /translation="MRVLLAPMEGVLDALVRELLTEVNDYDLCITEFVRVVDQLLPVK VFHRICPELHHASRTPSGTPVRIQLLGQHPQWLAENAARATALGSYGVDLNCGCPSKV VNGSGGGATLLKDPELIYQGAKAMRAAVPSHLPVTVKVRLGWDSGDRKFEIADAVQQA GASELVVHGRTKAQGYRAEHIDWQAIGEIRQRLTIPVIANGEILDWQSAQACMATSGC DAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVTLLQKYTRLEKQGDTGLYHVARIKQW LGYLRKEYIEATELFQSIRALNRSSEIARAIQAIKI" misc_feature complement(2270725..2271660) /gene="yohI" /locus_tag="STM2174" /note="tRNA dihydrouridine(16) synthase DusC; Region: PRK10550" /db_xref="CDD:236713" misc_feature complement(order(2270986..2270991,2271055..2271057, 2271061..2271063,2271157..2271159,2271244..2271246, 2271376..2271378,2271457..2271459,2271562..2271564, 2271637..2271645)) /gene="yohI" /locus_tag="STM2174" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:239200" misc_feature complement(order(2270986..2270988,2271055..2271060, 2271148..2271153,2271157..2271162,2271238..2271240, 2271244..2271246,2271364..2271369,2271457..2271459)) /gene="yohI" /locus_tag="STM2174" /note="active site" /db_xref="CDD:239200" misc_feature complement(order(2271151..2271153,2271157..2271159, 2271238..2271240,2271367..2271369)) /gene="yohI" /locus_tag="STM2174" /note="catalytic residues [active]" /db_xref="CDD:239200" misc_feature complement(order(2271055..2271060,2271148..2271150, 2271160..2271162,2271244..2271246,2271364..2271366)) /gene="yohI" /locus_tag="STM2174" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:239200" regulatory complement(2271667..2271672) /regulatory_class="ribosome_binding_site" /gene="yohI" /locus_tag="STM2174" /note="putative RBS for yohI; RegulonDB:STMS1H002317" gene complement(2271769..2272969) /locus_tag="STM2175" /db_xref="GeneID:1253697" CDS complement(2271769..2272962) /locus_tag="STM2175" /note="similar to E. coli 3-(3-hydroxyphenyl)propionate hydroxylase (AAC73450.1); Blastp hit to AAC73450.1 (554 aa), 25% identity in aa 12 - 342" /codon_start=1 /transl_table=11 /product="putative monooxygenase" /protein_id="NP_461120.1" /db_xref="GeneID:1253697" /translation="MTHVTSAIIVGGGIGGAATALSLARQGIKVMLLEKAHEIGEIGA GIQLGPNAFSALDSLGVGDVARQRAVFTDHITMMDAVNAEEVVCIETGQAFRDHFGGP YAVIHRVDIHATVWEAVLTHPGVEYRTSTHIVDIRQTPDDVTVFDEQGNSWTADILVG CDGVKSVVRQSLLGDAPRVTGHVVYRAVIDCDDMPDDLRINAPVLWAGPHCHLVHYPL RGGQQYNLVVTFHSRQQEEWGVKDGSKEEVLSYFAGIHPRPRQMLDKPTSWRRWSTAD REPVAKWGTERITLVGDAAHPVAQYMAQGACMALEDAVTLGKALERCDGDAQQAFALY ESVRIPRTARIVWSTREMGRLYHAAGVERQVRNLLWKGKSQEAFYRGIEWLYGWKEDN CLEPR" misc_feature complement(2271775..2272908) /locus_tag="STM2175" /note="3-hydroxybenzoate 6-monooxygenase; Region: PRK08163" /db_xref="CDD:181262" regulatory complement(2272964..2272969) /regulatory_class="ribosome_binding_site" /locus_tag="STM2175" /note="putative RBS for STM2175; RegulonDB:STMS1H002318" gene complement(2272977..2273628) /locus_tag="STM2176" /db_xref="GeneID:1253698" CDS complement(2272977..2273621) /locus_tag="STM2176" /note="similar to E. coli regulator of transcription; stringent starvation protein A (AAC76261.1); Blastp hit to AAC76261.1 (212 aa), 28% identity in aa 11 - 206" /codon_start=1 /transl_table=11 /product="putative glutathione S-transferase" /protein_id="NP_461121.1" /db_xref="GeneID:1253698" /translation="MKLYSFFNSSASYRVRIALALKGIDYQTVGVNIRIGQQNALAYR RMNPVGLVPTLVTDDGESLGQSLAIVDWLDRHFPQTPLLPTSDPARSQALEIVYAIAC DIHPINNMRVLRYLTDELKVSEEDKKRWYAHWIQQGLSAVEQLLRKSQSGRFCVGDAP GLADCCLIPQWANALRMGCDLSGYPRCKAVYDACVQLPAFIAAAPENQQDKIPA" misc_feature complement(2272986..2273618) /locus_tag="STM2176" /note="maleylacetoacetate isomerase; Region: maiA; TIGR01262" /db_xref="CDD:273527" regulatory complement(2273623..2273628) /regulatory_class="ribosome_binding_site" /locus_tag="STM2176" /note="putative RBS for STM2176; RegulonDB:STMS1H002319" gene complement(2273630..2274336) /locus_tag="STM2177" /db_xref="GeneID:1253699" CDS complement(2273630..2274331) /locus_tag="STM2177" /note="similar to E. coli putative isomerase (AAC74264.1); Blastp hit to AAC74264.1 (219 aa), 38% identity in aa 14 - 211" /codon_start=1 /transl_table=11 /product="putative flutathione S-transferase" /protein_id="NP_461122.1" /db_xref="GeneID:1253699" /translation="MTKYVFQPQAPVTVPVAGSDEQFPVRRVYCVGRNYAAHAREMGF DPDREPPFFFCKPADAVVPVAAGDTLELPYPAQTDNYHYEIELVVAIGKKGSDIPLEK AHEYVWGYATGLDMTRRDRQMEMRQMGRPWEIGKAFDLSAPIAPLHKAAETHNVDNAP IWLQVNGEDHQRSDIRHLIWSVNETISYLSGFFELQPGDLIFTGTPEGVGAVVKGDVI TGNVEGLTPIAVKIV" misc_feature complement(2273633..2274265) /locus_tag="STM2177" /note="2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport and catabolism]; Region: YcgM; COG0179" /db_xref="CDD:439949" regulatory complement(2274331..2274336) /regulatory_class="ribosome_binding_site" /locus_tag="STM2177" /note="putative RBS for STM2177; RegulonDB:STMS1H002320" gene complement(2274347..2275391) /locus_tag="STM2178" /db_xref="GeneID:1253700" CDS complement(2274347..2275384) /locus_tag="STM2178" /codon_start=1 /transl_table=11 /product="putative 1,2-dioxygenase protein" /protein_id="NP_461123.1" /db_xref="GeneID:1253700" /translation="MSEINQNVKDSRQQYYQHISGQNLTPLWESLHHLVPQTPNANCA PAYWNYQEIRPLLMESGNVIGAKEAIRRVLVLENPALRGQSSITATLYAGLQLILPGE VAPSHRHNQSALRFIVEGKGAFTAVDGERTPMHTGDFILTPQWRWHDHGNPGSEPVVW LDGLDLPLVNLLGCGFAEDYPEDQQPVTRKEGDYLPRYAANMLPLRHQRGNSSPIFNY RYDRSREALHDLTRMGDPDEWEGYKLRYVNPVTGGYPMPSMGAFLQLLPKGFASRVAR STDSTIYHVVEGAGQVTIGNETFHFSAKDIFVAPTWHEVSFRSSEDTVLFSFSDKPVQ EALGLFREARY" misc_feature complement(2274353..2275354) /locus_tag="STM2178" /note="gentisate 1,2-dioxygenase; Region: gentisate_1_2; TIGR02272" /db_xref="CDD:131325" regulatory complement(2275386..2275391) /regulatory_class="ribosome_binding_site" /locus_tag="STM2178" /note="putative RBS for STM2178; RegulonDB:STMS1H002321" gene complement(2275396..2276760) /locus_tag="STM2179" /db_xref="GeneID:1253701" CDS complement(2275396..2276754) /locus_tag="STM2179" /note="similar to E. coli putative transport protein (AAC73456.1); Blastp hit to AAC73456.1 (418 aa), 43% identity in aa 35 - 207, 40% identity in aa 220 - 380, 27% identity in aa 62 - 200" /codon_start=1 /transl_table=11 /product="putative sugar transporter" /protein_id="NP_461124.1" /db_xref="GeneID:1253701" /translation="MTQRRDLQALIDAAPVGKMQWRVIICCFLVVMLDGFDTAAIGFI APDIRTHWQLSASELAPLFGAGLLGLTAGALLCGPLADRFGRKRVIELCVALFGALSL LSAFSPDIETLVLLRFLTGLGLGGAMPNTITMTSEYLPARRRGALVTLMFCGFTLGSA MGGIVSAQLVPLIGWHGILALGGILPLMLFFGLLFALPESPRWQVRRQLPQAVVARTV SAITGERYHDTQFFLHETAAVAKGSIRQLFAGRQLVITLMLWVVFFMSLLIIYLLSSW MPTLLNHRGIDLQQASWVTAAFQVGGTLGALLLGVLMDRLNPFRVLAVSYALGAVCIV MIGLSENGLWLMALAIFGTGIGISGSQVGLNALTATLYPTQSRATGVSWSNAIGRCGA IVGSLSGGMMMALNFSFDTLFFVIAIPAAISAVMLTLLTVVVRLSISVPDDLPRASVV NE" misc_feature complement(2275465..2276685) /locus_tag="STM2179" /note="4-hydroxybenzoate transporter PcaK and similar transporters of the Major Facilitator Superfamily; Region: MFS_PcaK_like; cd17365" /db_xref="CDD:340923" misc_feature complement(order(2275579..2275581,2275588..2275593, 2275600..2275605,2275612..2275614,2275660..2275662, 2275672..2275674,2275684..2275689,2275837..2275839, 2275849..2275851,2275930..2275932,2275939..2275947, 2275954..2275959,2275966..2275968,2276278..2276280, 2276287..2276292,2276299..2276301,2276359..2276361, 2276368..2276376,2276380..2276385,2276533..2276535, 2276629..2276631,2276638..2276643,2276650..2276655)) /locus_tag="STM2179" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340923" regulatory complement(2276755..2276760) /regulatory_class="ribosome_binding_site" /locus_tag="STM2179" /note="putative RBS for STM2179; RegulonDB:STMS1H002322" gene 2276873..2277788 /locus_tag="STM2180" /db_xref="GeneID:1253702" regulatory 2276873..2276878 /regulatory_class="ribosome_binding_site" /locus_tag="STM2180" /note="putative RBS for STM2180; RegulonDB:STMS1H002323" CDS 2276880..2277788 /locus_tag="STM2180" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC74504.1); Blastp hit to AAC74504.1 (354 aa), 28% identity in aa 54 - 336" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461125.1" /db_xref="GeneID:1253702" /translation="MANWAQKLKLHHLQTLVALGEQGNLTHVARMMNISQPALSKWLS QLEDEIGITLFERHSKGLRPSEGGKLLLQHAQRLINDLERSQYEIARFKQGGLVGSLK IGCSPVATDCVSQAILSLLNEMPTLHLNIEEKVMTPLLHDLLAGQVDVVVGRVGGRAL QLPLNYQVLYTEPVCFVARPHHPLAARAQIAWSDLAHWRWIVWPTGTPIRISIDNALV DNGVMLPENTIESASMNVSTNLLQSSDMISILSLRLAQRYASQGQLAILNLPKIEQKG SVGMFWRKNETPSLALSRFLYFLAQV" misc_feature 2276895..2277764 /locus_tag="STM2180" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" misc_feature order(2277219..2277224,2277228..2277233,2277240..2277242, 2277252..2277254,2277258..2277278,2277561..2277578, 2277594..2277599,2277603..2277608) /locus_tag="STM2180" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" gene 2277907..2278318 /gene="yohJ" /locus_tag="STM2181" /db_xref="GeneID:1253703" regulatory 2277907..2277912 /regulatory_class="ribosome_binding_site" /gene="yohJ" /locus_tag="STM2181" /note="putative RBS for yohJ; RegulonDB:STMS1H002324" CDS 2277920..2278318 /gene="yohJ" /locus_tag="STM2181" /note="similar to E. coli orf, hypothetical protein (AAC75202.1); Blastp hit to AAC75202.1 (132 aa), 91% identity in aa 1 - 132" /codon_start=1 /transl_table=11 /product="putative effector of murein hydrolase LrgA" /protein_id="NP_461126.1" /db_xref="GeneID:1253703" /translation="MSKSLNIIWQYIRAFVLIYACLYAGIFLASLLPITIPGSIIGML ILFVLLALQILPAKWVNPGCYVLIRYMALLFVPIGVGVMQYFDLLRAQFGPVVVSCAI STLVVFVVVSWSSHLIHGERKVVGQKGTKK" misc_feature 2277920..2278315 /gene="yohJ" /locus_tag="STM2181" /note="hypothetical protein; Provisional; Region: PRK01821" /db_xref="CDD:234983" gene 2278301..2279010 /gene="yohK" /locus_tag="STM2182" /db_xref="GeneID:1253704" regulatory 2278301..2278306 /regulatory_class="ribosome_binding_site" /gene="yohJ" /locus_tag="STM2181" /note="putative RBS for yohK; RegulonDB:STMS1H002325" CDS 2278315..2279010 /gene="yohK" /locus_tag="STM2182" /note="similar to E. coli putative seritonin transporter (AAC75203.1); Blastp hit to AAC75203.1 (231 aa), 90% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="putative transmembrane protein" /protein_id="NP_461127.1" /db_xref="GeneID:1253704" /translation="MMTYIWWSLPLTLAVFFAARRLAAHFKMPLLNPLLVAMVVIIPF LLLTGIPYEHYFKGSEVLNDLLQPAVVALAYPLYEQLHQIRARWKSIISICFVGSLVA MITGTSVALLMGATPEIAASVLPKSVTTPIAMAVGGSIGGIPAISAVCVIFVGILGAV FGHTLLNAMHIRTKAARGLAMGTASHALGTARCAELDYQEGAFSSLALVICGIITSLV APFLFPLILAVMR" misc_feature 2278315..2279007 /gene="yohK" /locus_tag="STM2182" /note="hypothetical protein; Provisional; Region: PRK10711" /db_xref="CDD:182666" gene 2279153..2280048 /gene="cdd" /locus_tag="STM2183" /db_xref="GeneID:1253705" regulatory 2279153..2279158 /regulatory_class="ribosome_binding_site" /gene="cdd" /locus_tag="STM2183" /note="putative RBS for cdd; RegulonDB:STMS1H002326" CDS 2279164..2280048 /gene="cdd" /locus_tag="STM2183" /EC_number="3.5.4.5" /note="similar to E. coli cytidine/deoxycytidine deaminase (AAC75204.1); Blastp hit to AAC75204.1 (294 aa), 87% identity in aa 1 - 293" /codon_start=1 /transl_table=11 /product="cytidine/deoxycytidine deaminase" /protein_id="NP_461128.1" /db_xref="GeneID:1253705" /translation="MHPRFQTAFAQLADNLQSALAPILADHHFPAMLTAEQVSTLKNT AGLDEDALAFALLPLAAACARTDLSHFNVGAIARGVSGNWYFGANMEFLGATMQQTVH AEQSAISHAWLRGEKGLAAVTVNYTPCGHCRQFMNELNSGLDLRIHLPGRAPHTLRDY LPDAFGPKDLEIKTLLMDEQDHGFTLTGDTLTQAAITAANKSHMPYSHSPSGVALECK DGRIFTGSYAENAAFNPTLPPLQGALNLLSLNGYDYADIQRAILAEKGDAALIQWDAT AATLKALGCHNIDRVLLG" misc_feature 2279164..2280042 /gene="cdd" /locus_tag="STM2183" /note="cytidine deaminase; Provisional; Region: PRK09027" /db_xref="CDD:181614" gene 2280206..2280944 /gene="sanA" /locus_tag="STM2184" /db_xref="GeneID:1253706" regulatory 2280206..2280211 /regulatory_class="ribosome_binding_site" /gene="sanA" /locus_tag="STM2184" /note="putative RBS for sanA; RegulonDB:STMS1H002327" CDS 2280225..2280944 /gene="sanA" /locus_tag="STM2184" /note="similar to E. coli vancomycin sensitivity (AAC75205.1); Blastp hit to AAC75205.1 (239 aa), 93% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="vancomycin sensitivity protein" /protein_id="NP_461129.1" /db_xref="GeneID:1253706" /translation="MLKRVFYSLLVLVGLLLLTVLGLDRWMSWKTAPYIYDELQDLPY RQVGVVLGTAKYYRKGVINQYYRYRIQGALNAYNSGKVNYLLLSGDNALQSYNEPMTM RKDLIAAGVDPADIVLDYAGFRTLDSIVRTRKVFDTNDFIIITQRFHCERALFIALHM GIQAQCYAVPSPKNMLTVRLREFGARFSALADLYIFKREPRFLGPLVPIPTQHQVPND AQGYPAVTPEQLLELEKKKGK" misc_feature 2280225..2280941 /gene="sanA" /locus_tag="STM2184" /note="outer membrane permeability protein SanA; Region: PRK10834" /db_xref="CDD:182765" misc_feature order(2280597..2280599,2280606..2280608,2280657..2280659, 2280669..2280671,2280678..2280680,2280768..2280770) /gene="sanA" /locus_tag="STM2184" /note="putative active site [active]" /db_xref="CDD:99750" gene 2280921..2281186 /gene="b2145" /locus_tag="STM2185" /db_xref="GeneID:1253707" regulatory 2280921..2280926 /regulatory_class="ribosome_binding_site" /gene="b2145" /locus_tag="STM2185" /note="putative RBS for b2145; RegulonDB:STMS1H002328" CDS 2280941..2281186 /gene="b2145" /locus_tag="STM2185" /note="similar to E. coli orf, hypothetical protein (AAC75206.1); Blastp hit to AAC75206.1 (79 aa), 59% identity in aa 1 - 79" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461130.1" /db_xref="GeneID:1253707" /translation="MIMDVQTIFVILAFLLLPLFCFREAWKGWRTGAVDKVVKNARKP VYVYRHADPVQYWSYLFLYTGCGFLFTGMIIYLLFYR" misc_feature 2280947..2281183 /gene="b2145" /locus_tag="STM2185" /note="Protein of unknown function (DUF2542); Region: DUF2542; pfam10808" /db_xref="CDD:151258" gene 2281379..2282632 /locus_tag="STM2186" /db_xref="GeneID:1253708" regulatory 2281379..2281384 /regulatory_class="ribosome_binding_site" /locus_tag="STM2186" /note="putative RBS for STM2186; RegulonDB:STMS1H002329" CDS 2281391..2282632 /locus_tag="STM2186" /note="similar to E. coli putative oxidoreductase (AAC75207.1); Blastp hit to AAC75207.1 (412 aa), 84% identity in aa 1 - 412" /codon_start=1 /transl_table=11 /product="putative NADPH-dependent glutamate synthase beta chain or related oxidoreductase" /protein_id="NP_461131.1" /db_xref="GeneID:1253708" /translation="MPQQNYLDELTPGFTPLLAIKEASRCLLCHDAPCSQACPAQTDP GKFIRSIYFRNFKGAAETIRENNALGAVCARVCPTEKLCQRGCTRSGIDKPIDIARLQ RFITDFEQQTAMQIYQPGSKTRGKVAIIGAGPAGLQASVTLTHLGYDVTIYEKQPQPG GWLRHGIPAFRLPQSVLDQEIARIVEMGVNIKCNCEVGGSLSLAQLKAEYRAVLMTVG MSCGSGLPLFEQASHVEIAVDFLQRARQADGDISVPRSALIIGGGDVAMDVASTLKIL GCPSVTCVAREELAEFPASEKEFTSTQALGVSIIDGFTPVAVSGNKVTFHHVRHSGEL TLEAENIILAVGQHARLDTFAEIKAQHNIIDTHNYQTDDPAIFAAGDIVKGDKTVVYA VKTGKEAAQAIHHYLEEACSC" misc_feature 2281397..2282629 /locus_tag="STM2186" /note="dihydropyrimidine dehydrogenase subunit A; Provisional; Region: PRK11749" /db_xref="CDD:236967" gene 2282612..2283861 /gene="yeiA" /locus_tag="STM2187" /db_xref="GeneID:1253709" regulatory 2282612..2282617 /regulatory_class="ribosome_binding_site" /gene="yeiA" /locus_tag="STM2187" /note="putative RBS for yeiA; RegulonDB:STMS1H002330" CDS 2282626..2283861 /gene="yeiA" /locus_tag="STM2187" /note="similar to E. coli putative oxidoreductase (AAC75208.1); Blastp hit to AAC75208.1 (413 aa), 93% identity in aa 3 - 413" /codon_start=1 /transl_table=11 /product="putative dihydropyrimidine dehydrogenase" /protein_id="NP_461132.1" /db_xref="GeneID:1253709" /translation="MLTKDLSVTFCGVKFPNPFCLSSSPVGNCYEMCAKAYDTGWGGI VFKTIGFFIANEVSPRFDHLTKEDTGFIGFKNMEQIAEHPLEENLAAIRRLKQDYPDK VLIASIMGENEQQWQELARLVEEAGADMIECNFSCPQMTSHAMGSDVGQSPELVEKYC RAVKRGSSLPMLAKMTPNIGDMCEVALAAKRGGADGIATINTVKSITNIDLNRKIGMP VVNGKSSISGYSGKAVKPIALRFIQQLRMHPELRDFPISGIGGIETWEDAAEFLLLGA ATLQVTTGIMQYGYRIVEDMASGLSHYLADQGFASLQEMIGLANGNIIPAEDLDRSYI VYPRINQEKCVGCGRCYISCYDGGHQAMEWDEHSRTPHCNTEKCVGCLLCGHVCPVAC IDLGEVKFKKGEKEHALTL" misc_feature 2282635..2283834 /gene="yeiA" /locus_tag="STM2187" /note="NAD-dependent dihydropyrimidine dehydrogenase subunit PreA; Region: PRK08318" /db_xref="CDD:236237" gene complement(2283936..2284958) /gene="mglC" /locus_tag="STM2188" /db_xref="GeneID:1253710" CDS complement(2283936..2284946) /gene="mglC" /locus_tag="STM2188" /note="ABC superfamily (membrane); galactoside transport system permease protein MGLC. (SW:MGLC_SALTY)" /codon_start=1 /transl_table=11 /product="methyl-galactoside transport protein" /protein_id="NP_461133.1" /db_xref="GeneID:1253710" /translation="MSALNKKSFLTWLKEGGIYVVLLVLLAIIIFQDPTFLSLLNLSN ILTQSSVRIIIALGVAGLIVTQGTDLSAGRQVGLAAVVAATLLQSMENANKVFPEMAT MPIALVILIVCAIGAVIGLVNGIIIAYLNVTPFITTLGTMIIVYGINSLYYDFVGASP ISGFDSGFSTFAQGFVAMGSFRLSYITFYALIAVAFVWVLWNKTRFGKNIFAIGGNPE AAKVSGVNVALNLLMIYALSGVFYAFGGLLEAGRIGSATNNLGFMYELDAIAACVVGG VSFSGGVGTVFGVVTGVIIFTVINYGLTYIGVNPYWQYIIKGGIIIFAVALDSLKYAR KK" misc_feature complement(2283939..2284946) /gene="mglC" /locus_tag="STM2188" /note="galactose/methyl galactoside ABC transporter permease MglC; Region: mglC; PRK09478" /db_xref="CDD:181892" misc_feature complement(2284239..2284295) /gene="mglC" /locus_tag="STM2188" /note="TM-ABC transporter signature motif [active]" /db_xref="CDD:119321" regulatory complement(2284953..2284958) /regulatory_class="ribosome_binding_site" /gene="mglC" /locus_tag="STM2188" /note="putative RBS for mglC; RegulonDB:STMS1H002331" gene complement(2284962..2286494) /gene="mglA" /locus_tag="STM2189" /db_xref="GeneID:1253711" CDS complement(2284962..2286482) /gene="mglA" /locus_tag="STM2189" /note="ABC superfamily (atp_bind); galactoside transport ATP-binding protein MGLA. (SW:MGLA_SALTY)" /codon_start=1 /transl_table=11 /product="galactose (methyl-galactoside) transport protein" /protein_id="NP_461134.1" /db_xref="GeneID:1253711" /translation="MGSTISPPSGEYLLEMRGINKSFPGVKALDNVNLNVRPHSIHAL MGENGAGKSTLLKCLFGIYQKDSGSIVFQGKEVDFHSAKEALENGISMVHQELNLVLQ RSVMDNMWLGRYPTKGMFVDQDKMYQDTKAIFDELDIDIDPRARVGTLSVSQMQMIEI AKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE ITILRDGQWIATQPLEGLDMDKIIAMMVGRSLNQRFPDKENKPGDVILEVRHLTSLRQ PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSSGTITLHGKKINNHTANE AINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDS MRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA ELAKKGKGIIIISSEMPELLGITDRILVMSNGLVSGIVDTKTTTQNEILRLASLHL" misc_feature complement(2284965..2286437) /gene="mglA" /locus_tag="STM2189" /note="galactose/methyl galaxtoside transporter ATP-binding protein; Provisional; Region: PRK10982" /db_xref="CDD:182880" regulatory complement(2286489..2286494) /regulatory_class="ribosome_binding_site" /gene="mglA" /locus_tag="STM2189" /note="putative RBS for mglA; RegulonDB:STMS1H002332" gene complement(2286616..2287675) /gene="mglB" /locus_tag="STM2190" /db_xref="GeneID:1253712" CDS complement(2286616..2287614) /gene="mglB" /locus_tag="STM2190" /note="ABC superfamily (peri_perm); D-galactose-binding periplasmic protein precursor (GDP) (D-galactose/D-glucose binding protein) (GGBP). (SW:DGAL_SALTY)" /codon_start=1 /transl_table=11 /product="galactose transport protein" /protein_id="NP_461135.1" /db_xref="GeneID:1253712" /translation="MNKKVLTLSAVMASLLFGAHAHAADTRIGVTIYKYDDNFMSVVR KAIEKDGKSAPDVQLLMNDSQNDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEK ARGQNVPVVFFNKEPSRKALDSYDKAYYVGTDSKESGVIQGDLIAKHWQANQGWDLNK DGKIQYVLLKGEPGHPDAEARTTYVVKELNDKGIQTEQLALDTAMWDTAQAKDKMDAW LSGPNANKIEVVIANNDAMAMGAVEALKAHNKSSIPVFGVDALPEALALVKSGAMAGT VLNDANNQAKATFDLAKNLAEGKGAADGTSWKIENKIVRVPYVGVDKDNLSEFTQK" misc_feature complement(2286622..2287611) /gene="mglB" /locus_tag="STM2190" /note="galactose/glucose ABC transporter substrate-binding protein MglB; Region: PRK15395" /db_xref="CDD:185293" misc_feature complement(order(2286778..2286780,2286838..2286840, 2286913..2286915,2286997..2286999,2287072..2287074, 2287084..2287086,2287270..2287275,2287348..2287350, 2287495..2287500)) /gene="mglB" /locus_tag="STM2190" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380481" misc_feature complement(order(2286931..2286933,2287120..2287122, 2287132..2287134,2287138..2287140,2287144..2287146)) /gene="mglB" /locus_tag="STM2190" /note="Ca binding site [ion binding]; other site" /db_xref="CDD:380481" regulatory complement(2287620..2287625) /regulatory_class="ribosome_binding_site" /gene="mglB" /locus_tag="STM2190" /note="putative RBS for mglB; RegulonDB:STMS1H002333" regulatory complement(2287651..2287659) /regulatory_class="minus_10_signal" /gene="mglB" /locus_tag="STM2190" /note="putative -10_signal for mglB; RegulonDB:STMLTH004526" regulatory complement(2287667..2287675) /regulatory_class="minus_35_signal" /gene="mglB" /locus_tag="STM2190" /note="putative -35_signal for mglB; RegulonDB:STMLTH004526" protein_bind complement(2287846..2287866) /note="putative binding site for CRP, RegulonDB: STMS1H000067" /bound_moiety="CRP" gene complement(2288113..2289224) /gene="galS" /locus_tag="STM2191" /db_xref="GeneID:1253713" CDS complement(2288113..2289135) /gene="galS" /locus_tag="STM2191" /note="similar to E. coli mgl repressor, galactose operon inducer (AAC75212.1); Blastp hit to AAC75212.1 (346 aa), 88% identity in aa 1 - 340" /codon_start=1 /transl_table=11 /product="GalR/LacI family transcriptional repressor of mgl operon" /protein_id="NP_461136.1" /db_xref="GeneID:1253713" /translation="MITIRDVARQAGVSVATVSRVLNNSALVSPDTRDAVMQAVTLLG YRPNANAQALATQVSDTIGVVVMDVSDAFFGALVKAVDLVAQQHQKYVLIGNSYHEAE KERHAIEVLIRQRCNALIVHSKALTDRELSDFMDQIPGMVLINRIVPGYAHRCVCLDN VSGARMATRMLLNNGHQRIGYLASSHRIEDDAMRREGWLHALQEQGIAASESWIGTGT PDMQGGESAMVELLGRNLQLTAVFAYNDNMAAGALTALKDNGIAIPLHLSVIGFDDIP IARYTDPQLTTVRYPIASMAKIATELALQGAAGTLDITATHCFMPTLVRRHSVAWRQN AVLITN" misc_feature complement(2288116..2289135) /gene="galS" /locus_tag="STM2191" /note="HTH-type transcriptional regulator GalS; Region: PRK10401" /db_xref="CDD:236681" protein_bind complement(2289121..2289128) /gene="galS" /locus_tag="STM2191" /note="putative binding site for GalS, RegulonDB: STMS1H000197" /bound_moiety="GalS" regulatory complement(2289143..2289148) /regulatory_class="ribosome_binding_site" /gene="galS" /locus_tag="STM2191" /note="putative RBS for galS; RegulonDB:STMS1H002334" regulatory complement(2289200..2289208) /regulatory_class="minus_10_signal" /gene="galS" /locus_tag="STM2191" /note="putative -10_signal for galS; RegulonDB:STMLTH004527" protein_bind complement(2289216..2289236) /note="putative binding site for CRP, RegulonDB: STMS1H000099" /bound_moiety="CRP" regulatory complement(2289216..2289224) /regulatory_class="minus_35_signal" /gene="galS" /locus_tag="STM2191" /note="putative -35_signal for galS; RegulonDB:STMLTH004527" gene complement(2289285..2290436) /gene="yeiB" /locus_tag="STM2192" /db_xref="GeneID:1253714" CDS complement(2289285..2290427) /gene="yeiB" /locus_tag="STM2192" /note="similar to E. coli orf, hypothetical protein (AAC75213.1); Blastp hit to AAC75213.1 (385 aa), 84% identity in aa 1 - 377" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461137.1" /db_xref="GeneID:1253714" /translation="MERNVTLDFVRGVAILGILLLNISAFGLPKAAYLNPAWYGAIVP EDAWSWAILDIVAQAKFLTLFALLFGAGLQMLLPRGKQWIQSRLTLLVLLGFIHALFF WDGDILLAYGLVGLICWRLIRDAPSVKSLFNTGILLYLVGIGVLLLLGVVSSSETSRA WTPDASAILYEKYWKLNGGMEAISNRAEMLSNSLLALGAQYGWQLAGMMLLGAALMRS GWLKGQYSLRHYRRTGALLVALGLMINLPAVILQWRLDWAYRWCAFLLQAPRELSAPL QTLGYAALMFGFWPQLSRCRLTLAIACVGRMALTNYLLQTIICTTLFYQFGLFMKFNR LELLFFVVPVWAINLLFSVIWLRFWRQGPVEWLWRQLTLRASGSLR" misc_feature complement(2289294..2290409) /gene="yeiB" /locus_tag="STM2192" /note="hypothetical protein; Provisional; Region: PRK10835" /db_xref="CDD:182766" protein_bind complement(2289329..2289336) /gene="yeiB" /locus_tag="STM2192" /note="putative binding site for GalS, RegulonDB: STMS1H000196" /bound_moiety="GalS" regulatory complement(2290431..2290436) /regulatory_class="ribosome_binding_site" /gene="yeiB" /locus_tag="STM2192" /note="putative RBS for yeiB; RegulonDB:STMS1H002335" gene complement(2290442..2291126) /gene="folE" /locus_tag="STM2193" /db_xref="GeneID:1253715" CDS complement(2290442..2291110) /gene="folE" /locus_tag="STM2193" /EC_number="3.5.4.16" /note="similar to E. coli GTP cyclohydrolase I (AAC75214.1); Blastp hit to AAC75214.1 (222 aa), 96% identity in aa 1 - 221" /codon_start=1 /transl_table=11 /product="GTP cyclohydrolase I" /protein_id="NP_461138.1" /db_xref="GeneID:1253715" /translation="MPSLSKEAALVHDALVARGLETPLRPPMDELDNETRKSLIAGHM TEIMQLLNLDLSDDSLMETPHRIAKMYVDEIFAGLDYANFPKITLIENKMKVDEMVTV RDITLTSTCEHHFVTIDGKATVAYIPKDSVIGLSKINRIVQFFAQRPQVQERLTQQIL TALQTLLGTNNVAVSIDAVHYCVKARGIRDATSATTTTSLGGLFKSSQNTRQEFLRAV RHHP" misc_feature complement(order(2290472..2290480,2290484..2290486, 2290493..2290498,2290511..2290519,2290523..2290531, 2290535..2290540,2290553..2290558,2290565..2290573, 2290610..2290612,2290640..2290642,2290649..2290651, 2290655..2290663,2290691..2290693,2290700..2290708, 2290718..2290720,2290724..2290729,2290748..2290750, 2290754..2290756,2290760..2290765,2290772..2290777, 2290787..2290789,2290793..2290795,2290799..2290810, 2290814..2290825,2290838..2290840,2290844..2290846, 2290874..2290876,2290889..2290891,2290901..2290903, 2290913..2290915,2290919..2290924,2290928..2290936, 2290940..2290942,2290946..2290948,2290952..2290954, 2290958..2290963,2290970..2290972,2290982..2290984, 2290991..2290996,2291003..2291008)) /gene="folE" /locus_tag="STM2193" /note="homodecamer interface [polypeptide binding]; other site" /db_xref="CDD:238349" misc_feature complement(2290451..2290993) /gene="folE" /locus_tag="STM2193" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA), GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:469697" misc_feature complement(order(2290553..2290555,2290565..2290567, 2290571..2290573,2290652..2290660,2290691..2290693, 2290703..2290708,2290712..2290714,2290769..2290774, 2290778..2290780,2290904..2290906,2290913..2290915)) /gene="folE" /locus_tag="STM2193" /note="active site" /db_xref="CDD:238349" misc_feature complement(order(2290565..2290567,2290571..2290573, 2290769..2290774,2290778..2290780)) /gene="folE" /locus_tag="STM2193" /note="putative catalytic site residues [active]" /db_xref="CDD:238349" misc_feature complement(order(2290565..2290567,2290769..2290774, 2290778..2290780)) /gene="folE" /locus_tag="STM2193" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:238349" misc_feature complement(order(2290484..2290498,2290502..2290510, 2290595..2290597,2290601..2290603,2290619..2290621, 2290628..2290630)) /gene="folE" /locus_tag="STM2193" /note="GTP-CH-I/GFRP interaction surface [active]" /db_xref="CDD:238349" regulatory complement(2291121..2291126) /regulatory_class="ribosome_binding_site" /gene="folE" /locus_tag="STM2193" /note="putative RBS for folE; RegulonDB:STMS1H002336" regulatory 2291427..2291432 /regulatory_class="ribosome_binding_site" /note="putative RBS for yeiG; RegulonDB:STMS1H002337" gene 2291440..2292297 /gene="yeiG" /locus_tag="STM2194" /db_xref="GeneID:1253716" CDS 2291440..2292297 /gene="yeiG" /locus_tag="STM2194" /EC_number="3.1.1.1" /note="similar to E. coli putative esterase. (AAC75215.1); Blastp hit to AAC75215.1 (278 aa), 86% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="putative esterase" /protein_id="NP_461139.2" /db_xref="GeneID:1253716" /translation="MEMLEEHRCFGGWQQRWRHHAATLNCAMTFSIFLPPTQDNEPPP VLYWLSGLTCNDENFTTKAGAQRIAAELGIVLVMPDTSPRGEQVADDSGYDLGHGAGF YLNATQPPWASHYRMYDYLRDELPALIQTQFNVSDRCAISGHSMGGHGALIMALKNPG KYTSVSAFAPIVNPSRVPWGIKALTAYLGEDESAWTEWDSCELMLASQPQDAIPVLID QGDSDQFLADQLQPAVLAEAARQTAWPMTLRIQPGYDHSYYFIASFIEDHLRFHARYL RDERETSPT" misc_feature 2291461..2292267 /gene="yeiG" /locus_tag="STM2194" /note="A functionally diverse superfamily containing proteases, lipases, peroxidases, esterases, epoxide hydrolases and dehalogenases. The catalytic apparatus typically involves three residues (catalytic triad): a serine, a glutamate or aspartate and a...; Region: alpha/beta hydrolases; cl21494" /db_xref="CDD:473884" gene complement(2292286..2292681) /locus_tag="STM2195" /db_xref="GeneID:1253717" CDS complement(2292286..2292675) /locus_tag="STM2195" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_461140.1" /db_xref="GeneID:1253717" /translation="MKYNTMNNDEIILSLCARLKETRLSLSMTQQQLADRAHVGIATI KRIEKGGGLNLDTLISLLRALDKLHNLDAVLFESELRNFHESYEGGEGSGRLQVRQQA ADLNNKSSAPQSEEVNYSAALENSLCW" misc_feature complement(<2292478..2292660) /locus_tag="STM2195" /note="Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Region: HipB; COG1396" /db_xref="CDD:441006" regulatory complement(2292676..2292681) /regulatory_class="ribosome_binding_site" /locus_tag="STM2195" /note="putative RBS for STM2195; RegulonDB:STMS1H002338" gene complement(2292680..2294053) /locus_tag="STM2196" /db_xref="GeneID:1253718" CDS complement(2292680..2294047) /locus_tag="STM2196" /note="similar to E. coli L-serine deaminase (AAC74884.1); Blastp hit to AAC74884.1 (454 aa), 48% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="putative D-serine dehydratase" /protein_id="NP_461141.1" /db_xref="GeneID:1253718" /translation="MESCLDIFKIVIGPSSSRTVGPMRAACHFISLLREQETLPLIRE IEIELYGALSLSRKCHNVDTALYLGLLGCQPENVDLRSYMAVIKRAENENKIELPLSD AGGITIKVKIIANHQAHPGHPYAMTFRARDDYFTVYEETWFSTGAGQVRKHGEPLTPS LPLRTVSPFEFSHAAQLLALCRRNGLSVAALMMKNELCRHSPQTLQNYLAQIWDVMQQ AVYRGLHTEGVLPGPYQVPRRACALHKTLQANRSASDFLTALNWVNAFAIAVSEENAS GGQIVTAPTNGACGIIPAALCWYDKFVTPLEPGALTRFFLTAAAIAMLFKQNASILGS EVGCQGEIGVACSMAAAGLAELMGASVEQTLSAAEIAMEHHLGLTCDPLGGQVQIPCI ERNAISAVKAINAATMAMSRVSEPCISLDEIIAAMYETGKDMSAKYRETYHGSLGKIQ PRKRG" misc_feature complement(2292710..2294044) /locus_tag="STM2196" /note="Serine dehydratase alpha chain; Region: SDH_alpha; cl27283" /db_xref="CDD:452735" regulatory complement(2294048..2294053) /regulatory_class="ribosome_binding_site" /locus_tag="STM2196" /note="putative RBS for STM2196; RegulonDB:STMS1H002339" gene 2294259..2295151 /locus_tag="STM2197" /db_xref="GeneID:1253719" regulatory 2294259..2294264 /regulatory_class="ribosome_binding_site" /locus_tag="STM2197" /note="putative RBS for STM2197; RegulonDB:STMS1H002340" CDS 2294264..2295151 /locus_tag="STM2197" /note="similar to E. coli 3-phosphoserine phosphatase (AAC77341.1); Blastp hit to AAC77341.1 (322 aa), 39% identity in aa 111 - 305" /codon_start=1 /transl_table=11 /product="putative phosphoserine phosphatase" /protein_id="NP_461142.1" /db_xref="GeneID:1253719" /translation="MSIIYFITTQDIDTFQKKLQETLFNAVTMPFPLLFDKRYAALIN TAYLKLTLPAECLTPEFYRYLRELSLQWQFDFFIKPQPLPANGIIAFDMDSTFIAEEG VDEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGMLKGTPKAVLNAVCDRMTLSP GLLTILPVIKAKGFKTAIISGGLDIFTQRLKERYQLDYAFSNTVEIRDNVLTDNITLP IMNAANKKQTLVDLAARLNIATENIIACGDGANDLPMLEHAGTGIAWKAKPVVRKKIH HQINYHGFELLLFLIEDEL" misc_feature 2294525..2295064 /locus_tag="STM2197" /note="phosphoserine phosphatase (PSP), similar to Methanococcus Jannaschii PSP and Saccharomyces cerevisiae SER2p; Region: HAD_PSP; cd07500" /db_xref="CDD:319803" misc_feature order(2294537..2294551,2294801..2294809,2294936..2294938, 2295002..2295007,2295014..2295019) /locus_tag="STM2197" /note="active site" /db_xref="CDD:319803" gene 2295178..2296506 /locus_tag="STM2198" /db_xref="GeneID:1253720" regulatory 2295178..2295183 /regulatory_class="ribosome_binding_site" /locus_tag="STM2198" /note="putative RBS for STM2198; RegulonDB:STMS1H002341" CDS 2295184..2296506 /locus_tag="STM2198" /note="similar to E. coli regulator of uhpT (AAC76690.1); Blastp hit to AAC76690.1 (440 aa), 39% identity in aa 5 - 428" /codon_start=1 /transl_table=11 /product="putative regulatory protein" /protein_id="NP_461143.1" /db_xref="GeneID:1253720" /translation="MSIKTFIFSQPDKPIVKEKKEIDQTYKKFRFEIIASVFISYAVF YLTRKNFSAAMPAMLTETSLTAEDFAIMSSIFYILYGAMKFVGGMLVDKINPKAMTGP VLIGVGIVNILFGFSDSVAAFYVLYSLNAILQGTSFPPMAKIMASWFSKNERGRWWAI VEAAHNIGGSLAPLLTSFAIAFSGSWKMGFYVPGAISLLMGIVALFTIKDRPGTLGLP NVGQWRNDPTELAQVKASPVNLSFWQIFVKYILTNPLVWIIIIGDMSVYIARTILNDW PQIYYSQVHGWSLIKANSIISWFEAGGLAGGLLAGYLSDFMFKSNRWMTGLIFALALC ICIVLVPLVQDTSYTLTAILFTIMGFALYGPHMLFAVGCLDVTHKDAAGSITGFRGLF SYVGAAMAGVPVIMVKNSWAWSGVYIYAVIAILLTTLSLALLSRLHRL" misc_feature 2295271..2296455 /locus_tag="STM2198" /note="Membrane sensor protein UhpC of the Major Facilitator Superfamily of transporters; Region: MFS_UhpC; cd17488" /db_xref="CDD:341041" misc_feature order(2295313..2295318,2295325..2295330,2295337..2295339, 2295433..2295435,2295583..2295588,2295592..2295600, 2295607..2295609,2295667..2295669,2295676..2295681, 2295688..2295690,2295970..2295972,2295979..2295984, 2295991..2295999,2296006..2296008,2296090..2296092, 2296102..2296104,2296264..2296269,2296279..2296281, 2296291..2296293,2296339..2296341,2296348..2296353, 2296360..2296365,2296372..2296374) /locus_tag="STM2198" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:341041" gene complement(2296550..2298554) /gene="cirA" /locus_tag="STM2199" /db_xref="GeneID:1253721" CDS complement(2296550..2298541) /gene="cirA" /locus_tag="STM2199" /note="receptor for colicin I; requires TonB; similar to E. coli outer membrane receptor for iron-regulated colicin I receptor; porin; requires tonB gene product (AAC75216.1); Blastp hit to AAC75216.1 (663 aa), 88% identity in aa 1 - 663" /codon_start=1 /transl_table=11 /product="outer membrane porin" /protein_id="NP_461144.1" /db_xref="GeneID:1253721" /translation="MFRFNPFVRVGLCMSAVTLAWPVAAATDDGETMVVTASAIEQNL KDAPASISVITQQDLQRRPVQNLKDVLKEVPGVQLTNEGDNRKGVSIRGLDSSYTLIL IDGKRVNSRNAVFRHNDFDLNWIPVDAIERIEVVRGPMSSLYGSDALGGVVNIITKKI GQKWHGSVTVDSTIQEHRDRGDTYNGQFFTSGPLIDGVLGMKAYGSLAKREKDEQQSS ATTATGETPRIEGFTSRDGNVEFAWTPNENHDVTAGYGFDRQDRDSDSLDKNRLERQN YALSHNGRWDLGNSELKFYGEKVENKNPGNSSPITSESNSIDGKYVLPLASVNQFLTF GGEWRHDKLSDAVNLTGGSSTKTSASQYALFLEDEWRIFEPLALTTGIRMDDHETYGD HWSPRAYLVYNATDTLTVKGGWATAFKAPSLLQLSPDWATNSCRGGCRIVGSPDLKPE TSESWELGLYYRGEEGILEGVEASVTTFRNDVDNRISISRTPDVNAAPGYSNFVGFET NSRGQRVPVFRYYNVNKARIQGVETELKVPFNEAWKLSLNYTYNDGRDVSNGGNKPLS DLPFHTANGTLDWKPVQLEDWSFYVSGNYTGRKRADSATAKTPGGYVVWDTGAAWQAT KNVKLRAGVLNVGDKDLKRDDYGYTEDGRRYFMAVDYRF" misc_feature complement(2296553..2298541) /gene="cirA" /locus_tag="STM2199" /note="catecholate siderophore receptor CirA; Provisional; Region: PRK10064" /db_xref="CDD:236646" regulatory complement(2298549..2298554) /regulatory_class="ribosome_binding_site" /gene="cirA" /locus_tag="STM2199" /note="putative RBS for cirA; RegulonDB:STMS1H002342" protein_bind complement(2298725..2298745) /note="putative binding site for Fur, RegulonDB: STMS1H000191" /bound_moiety="Fur" protein_bind complement(2298737..2298757) /note="putative binding site for Fur, RegulonDB: STMS1H000189" /bound_moiety="Fur" gene complement(2298887..2300373) /gene="lysP" /locus_tag="STM2200" /db_xref="GeneID:1253722" CDS complement(2298887..2300356) /gene="lysP" /locus_tag="STM2200" /note="similar to E. coli lysine-specific permease (AAC75217.1); Blastp hit to AAC75217.1 (489 aa), 94% identity in aa 1 - 489" /codon_start=1 /transl_table=11 /product="APC family lysine-specific permease" /protein_id="NP_461145.1" /db_xref="GeneID:1253722" /translation="MGSKTKTTEAPALRRELKARHLTMIAIGGSIGTGLFVASGATIS QAGPGGALFSYILIGLMVYFLMTSLGELAAYMPVSGSFATYGQNYVEEGFGFALGWNY WYNWAVTIAVDLVAAQLVMGWWFPDTPGWIWSALFLCVIFLLNYISVRGFGEAEYWFS LIKVATVIIFIIVGVAMIIGIFKGVEPVGWSNWTTGDAPFAGGFAAMIGVAMIVGFSF QGTELIGIAAGESENPEKNIPRAVRQVFWRILLFYVFAILIISLIIPYTDPNLLRNDV KDISVSPFTLVFQHAGLLSAAAIMNAVILTAVLSAGNSGMYASTRMLYTLACDGKAPR IFAKLSRGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSGMTGFIAWLGIAIS HYRFRRGYVLQGYDVNDLPYRSGFFPLGPIFAFVLCLIITLGQNYEAFLKDTIDWGGV AATYIGIPLFLLIWFGYKLIKGTHFVRYSEMHFPERVKK" misc_feature complement(2298890..2300356) /gene="lysP" /locus_tag="STM2200" /note="lysine transporter; Provisional; Region: PRK10836" /db_xref="CDD:182767" regulatory complement(2300368..2300373) /regulatory_class="ribosome_binding_site" /gene="lysP" /locus_tag="STM2200" /note="putative RBS for lysP; RegulonDB:STMS1H002343" gene complement(2300546..2301422) /gene="yeiE" /locus_tag="STM2201" /db_xref="GeneID:1253723" CDS complement(2300546..2301409) /gene="yeiE" /locus_tag="STM2201" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC75218.1); Blastp hit to AAC75218.1 (293 aa), 91% identity in aa 1 - 287" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461146.1" /db_xref="GeneID:1253723" /translation="MHITLRQLEVFAEVLKSGSTTQASVMLSLSQSAVSAALTDLEGQ LGVQLFDRVGKRLVVNEHGRLLYPRALALLEQAIEIEQLFREDNGAIRVYASSTIGNY ILPAMIARYRQHYPALPLELSVGNSQDVINAVLDFRVDIGLIEGPCHSTEIISEPWLE DELVVFAAPSSPLTQGPVTLEQLAASPWILRERGSGTREIVDYLLLSHLPRFHMAMEL GNSEAIKHAVRHGLGISCLSRRVIAEQLQAGTLGEVAVPLPRLVRTLWRVHHRQKHLS NALQRFLSYCE" misc_feature complement(2300549..2301409) /gene="yeiE" /locus_tag="STM2201" /note="putative DNA-binding transcriptional regulator; Provisional; Region: PRK10837" /db_xref="CDD:182768" regulatory complement(2301417..2301422) /regulatory_class="ribosome_binding_site" /gene="yeiE" /locus_tag="STM2201" /note="putative RBS for yeiE; RegulonDB:STMS1H002344" gene 2301518..2302579 /gene="yeiH" /locus_tag="STM2202" /db_xref="GeneID:1253724" regulatory 2301518..2301523 /regulatory_class="ribosome_binding_site" /gene="yeiH" /locus_tag="STM2202" /note="putative RBS for yeiH; RegulonDB:STMS1H002345" CDS 2301530..2302579 /gene="yeiH" /locus_tag="STM2202" /note="similar to E. coli orf, hypothetical protein (AAC75219.1); Blastp hit to AAC75219.1 (349 aa), 88% identity in aa 1 - 349" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461147.1" /db_xref="GeneID:1253724" /translation="MTELTLQNHCRTMWHFIPGLALSAVITGVALWGGAIPAVAGAGF SALTLAILLGMVIGNTIYPQIWKQCDGGVLFAKQHLLRLGIILYGFRLTFSQIADVGI SGIVIDVLTLSSTFMLACFLGQKVFGLDRHTSWLIGAGSSICGAAAVLATEPVVKAEA SKVTVAVATVVIFGTIAIFLYPAMYPLLAHWFSPETYGIYIGSTMHEVAQVVAAGHAV SPDAENAAVIAKMLRVMMLAPFLIILAARVKQLSPATGAEKSKITIPWFAIFFIVVAI FNSFHLLPKAVVDMLVTLDTVLLAMAMAALGLTTHVSALKKAGAKPLLMALALFAWLI IGGGAINVLIHSLIA" misc_feature 2301569..2302573 /gene="yeiH" /locus_tag="STM2202" /note="conserved hypothetical integral membrane protein; Region: TIGR00698" /db_xref="CDD:129781" protein_bind 2302575..2302595 /note="putative binding site for SoxS, RegulonDB: STMS1H000368" /bound_moiety="SoxS" gene 2302588..2303515 /gene="nfo" /locus_tag="STM2203" /db_xref="GeneID:1253725" regulatory 2302588..2302596 /regulatory_class="minus_35_signal" /gene="nfo" /locus_tag="STM2203" /note="putative -35_signal for nfo; RegulonDB:STMLTH004528" regulatory 2302612..2302620 /regulatory_class="minus_10_signal" /gene="nfo" /locus_tag="STM2203" /note="putative -10_signal for nfo; RegulonDB:STMLTH004528" regulatory 2302646..2302651 /regulatory_class="ribosome_binding_site" /gene="nfo" /locus_tag="STM2203" /note="putative RBS for nfo; RegulonDB:STMS1H002346" CDS 2302658..2303515 /gene="nfo" /locus_tag="STM2203" /EC_number="3.1.21.2" /note="similar to E. coli endonuclease IV (AAC75220.1); Blastp hit to AAC75220.1 (285 aa), 88% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="endonuclease IV" /protein_id="NP_461148.1" /db_xref="GeneID:1253725" /translation="MKYIGAHVSAAGGLANAPARAAEIGATAFALFTKNQRQWRAAPL TPQVIDDFKIACEKYHFSAAQILPHDSYLINLGHPVSEALEKSRDAFLDEMQRCEQLG LTLLNFHPGSHLMQIAQEDCLARIAESINIALAQTEGVTAVIENTAGQGSNLGFEFEQ LAAIIDGVEDKSRVGVCIDTCHAFAAGYDLRTPEACEKTFAEFGKIVGFQYLRGMHLN DAKSAFGSRVDRHHSLGEGNIGHDAFRWIMQDGRFDGIPLILETINPDIWAEEIAWLK AQQIAEAMA" misc_feature 2302658..2303494 /gene="nfo" /locus_tag="STM2203" /note="endonuclease IV; Provisional; Region: PRK01060" /db_xref="CDD:179214" misc_feature order(2302676..2302678,2302751..2302753,2302871..2302873, 2303438..2303440,2303459..2303461) /gene="nfo" /locus_tag="STM2203" /note="AP (apurinic/apyrimidinic) site pocket [active]" /db_xref="CDD:237986" misc_feature order(2302760..2302774,2302871..2302876,2302880..2302882, 2302889..2302891) /gene="nfo" /locus_tag="STM2203" /note="DNA interaction; other site" /db_xref="CDD:237986" misc_feature order(2302862..2302864,2302982..2302984,2303090..2303092, 2303192..2303194,2303201..2303203,2303303..2303305, 2303342..2303344,2303348..2303350,2303438..2303440) /gene="nfo" /locus_tag="STM2203" /note="Metal-binding active site; metal-binding site" /db_xref="CDD:237986" gene complement(2303580..2305281) /gene="fruA" /locus_tag="STM2204" /db_xref="GeneID:1253726" CDS complement(2303580..2305268) /gene="fruA" /locus_tag="STM2204" /note="Sugar Specific PTS system; similar to E. coli PTS system, fructose-specific transport protein (AAC75228.1); Blastp hit to AAC75228.1 (563 aa), 92% identity in aa 1 - 563" /codon_start=1 /transl_table=11 /product="fructose-specific transport protein" /protein_id="NP_461149.1" /db_xref="GeneID:1253726" /translation="MKTLLIIDANLGQARAYMAKTLLGAAAHKANLEIIDNPNDAELA IVLGESLPNDNALNGKKVWLGDIGRAVAHPELFLSEAKSHATPYSAPAAAVPAASGGP KRVVAVTACPTGVAHTFMAAEAIETEAKKRGWWVKVETRGSVGAGNAITPEEVAEADL VIVAADIEVDLAKFAGLPMYRTSTGLALKKTAQELDKAVAEATPYQPAGKASQAATEG KKESAGAYRHLLTGVSYMLPMVVAGGLCIALSFAFGIEAFKVPDTLAAALMQIGGGSA FALMVPVLAGYIAFSIADRPGLTPGLIGGMLAVSTGSGFIGGIIAGFLAGYMAKLIST KLKLPQSMEALKPILIIPLISSLVVGLAMIYLIGKPVAGILEGLTHWLQTMGTVNAVL LGAILGGMMCTDMGGPVNKAAYAFGVGLLSTQTYAPMAAIMAAGMVPPLALGLATMVA RRKFDKAQQEGGKAALVLGLCFITEGAIPFAARDPMRVLPCCIVGGALTGAISMAVGA KLMAPHGGLFVLLIPGAITPVLGYLLAIVAGTLVAGLAYAVLKRPETEVTAKAA" misc_feature complement(2303583..2305268) /gene="fruA" /locus_tag="STM2204" /note="PTS system fructose-specific transporter subunits IIBC; Provisional; Region: PRK10712" /db_xref="CDD:236740" regulatory complement(2305276..2305281) /regulatory_class="ribosome_binding_site" /gene="fruA" /locus_tag="STM2204" /note="putative RBS for fruA; RegulonDB:STMS1H002347" gene complement(2305285..2306234) /gene="fruK" /locus_tag="STM2205" /db_xref="GeneID:1253727" CDS complement(2305285..2306223) /gene="fruK" /locus_tag="STM2205" /EC_number="2.7.1.56" /note="similar to E. coli fructose-1-phosphate kinase (AAC75229.1); Blastp hit to AAC75229.1 (312 aa), 98% identity in aa 1 - 312" /codon_start=1 /transl_table=11 /product="fructose-1-phosphate kinase" /protein_id="NP_461150.1" /db_xref="GeneID:1253727" /translation="MSRRVATITLNPAYDLVGFCPEIERGEVNLVKTTGLHAAGKGIN VAKVLKDLGIDVTVGGFLGKDNQDGFQQLFSELGIANRFQVVQGRTRINVKLTEKDGE VTDFNFSGFDVTPADWERFVNDSLSWLGQFDMVCVSGSLPAGVSPEAFTDWMTRLRSQ CPCIIFDSSREALVAGLKAAPWLVKPNRRELEIWAGRKLPEMKDVIDAAHALREQGIA HVVISLGAEGALWVNASGEWIAKPPAVDVVSTVGAGDSMVGGLIYGLLMRESSEHTLR LATAVAALAVSQSNVGITDRPQLAAMMARVDLQPFN" misc_feature complement(2305288..2306223) /gene="fruK" /locus_tag="STM2205" /note="1-phosphofructokinase; Provisional; Region: fruK; PRK09513" /db_xref="CDD:181923" misc_feature complement(order(2305810..2305812,2306050..2306052, 2306056..2306058,2306074..2306076,2306086..2306088)) /gene="fruK" /locus_tag="STM2205" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:238570" misc_feature complement(order(2305459..2305461,2305465..2305467, 2305537..2305539,2305555..2305557,2305663..2305665, 2305669..2305671,2305723..2305725)) /gene="fruK" /locus_tag="STM2205" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:238570" gene complement(2306223..2307368) /gene="fruF" /locus_tag="STM2206" /db_xref="GeneID:1253728" CDS complement(2306223..2307353) /gene="fruF" /locus_tag="STM2206" /note="PTS system, fructose-specific IIA/FPRr component (EIIA-FRU) (fructose-permease IIA/HPR component) (phosphotransferase enzyme II, A/HPR component). (SW:PTFA_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2" /protein_id="NP_461151.1" /db_xref="GeneID:1253728" /translation="MFQLSVQDIHPGEQAGNKEEAIRQIAAALAQAGNVAGGYVDGML AREQQTSTFLGNGIAIPHGTTDTRDQVLKTGVQVFQFPQGVTWGEGQVAYVAIGIAAS SDEHLGLLRQLTHVLSDDSVAEQLKSATTAEELRALLMGEKQSEQLKLDNETMTLDVI ASSLVTLQALNAARLKEAGAVDAAFVAKTINDSPMNLGQGIWLNDSAEGNLRSAVAVS RATQAFDVEGEKAALLVTVAMNDEQPIAVLKRLGDLLLNNKADRLLSADAATLLALLT SDDALTDDVLSAEFVVRNEHGLHARPGTMLVNTIKQFNSEITVTNLDGTGKPANGRSL MKVVALGVKKGHRLRFTAQGEDAEQALKAIGDAIAAGLGEGA" misc_feature complement(2306229..2307353) /gene="fruF" /locus_tag="STM2206" /note="fused PTS fructose transporter subunit IIA/HPr protein; Region: PRK11109" /db_xref="CDD:236849" regulatory complement(2306229..2306234) /regulatory_class="ribosome_binding_site" /gene="fruK" /locus_tag="STM2205" /note="putative RBS for fruK; RegulonDB:STMS1H002348" regulatory complement(2307363..2307368) /regulatory_class="ribosome_binding_site" /gene="fruF" /locus_tag="STM2206" /note="putative RBS for fruF; RegulonDB:STMS1H002349" gene 2307722..2308903 /gene="setB" /locus_tag="STM2207" /db_xref="GeneID:1253729" CDS 2307722..2308903 /gene="setB" /locus_tag="STM2207" /note="sugar efflux transporter B. (SW:SETB_SALTY)" /codon_start=1 /transl_table=11 /product="proton efflux pump" /protein_id="NP_461152.1" /db_xref="GeneID:1253729" /translation="MHNSPAAAAPKSFDLTSTAFLIVAFLTGIAGALQTPTLSIFLTD EVHARPGMVGFFFTGSAVIGIIVSQFLAGRSDKKGDRKKLIVFCCVLGMLACVLFAWN RNYFILLFIGVFLSSFGSTANPQMFALAREHADRTGREAVMFSSILRAQVSLAWVIGP PLAYALAMGFSFTVMYLSAAVAFIVCGVMVWFFLPSMRKDAPLATGTLEAPRRNRRDT LLLFVICTLMWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIPTMLIAGYFA KRLGKRLLMCIAVVAGLCFYVGMLLAHAPATLLGLQLLNAIYIGILGGIGMLYFQDLM PGQAGSATTLYTNTIRVGWIIAGSLAGIAAEIWNYHAVFWFALVMIVATMFCLARIKD V" misc_feature 2307722..2308900 /gene="setB" /locus_tag="STM2207" /note="sugar efflux transporter SetB; Region: PRK15011" /db_xref="CDD:184973" gene complement(2308968..2309645) /locus_tag="STM2208" /db_xref="GeneID:1253730" CDS complement(2308968..2309633) /locus_tag="STM2208" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461153.1" /db_xref="GeneID:1253730" /translation="MRGENSEIDLVDVSLFLIRKWLSIMIATFIFVAIGYVFVSVQHD TKVVSMTIKPNLDTPATYALCGYTNDIQCKTTVILNQFSRFLPAEYKNKISFDAKNQL VLFKAQGREESVNNIISTLKNSVDKMAAWYIDDGDIKRYSVHKNMLQTETYAKLSLLS EAVKNNANIEVIDVAVTPKYKMRLVLVLCGLMGVIFSITGLLCKRALTEYRIEKKTMN DRA" misc_feature complement(2309016..2309204) /locus_tag="STM2208" /note="G-rich domain on putative tyrosine kinase; Region: GNVR; pfam13807" /db_xref="CDD:433492" gene complement(2309635..2309757) /locus_tag="STM2209" /db_xref="GeneID:1253731" CDS complement(2309635..2309757) /locus_tag="STM2209" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461154.1" /db_xref="GeneID:1253731" /translation="MCGFYLMKKYTFAARAFIFTLVLLFVISVFGLTISVLKGM" regulatory complement(2309640..2309645) /regulatory_class="ribosome_binding_site" /locus_tag="STM2209" /note="putative RBS for STM2208; RegulonDB:STMS1H002350" gene 2310185..2310588 /locus_tag="STM2210" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1253732" gene 2310492..2311295 /gene="yeiP" /locus_tag="STM2211" /db_xref="GeneID:1253733" CDS 2310492..2311295 /gene="yeiP" /locus_tag="STM2211" /note="similar to E. coli putative elongation factor (AAC75232.1); Blastp hit to AAC75232.1 (275 aa), 83% identity in aa 8 - 275" /codon_start=1 /transl_table=11 /product="putative elongation factor" /protein_id="NP_461155.3" /db_xref="GeneID:1253733" /translation="MPSDIPKTRLETEGTTQHTSPLRATCHRVFSLNAGRKAGEQYHL FCTSKSDNSTCLDGPARVVLRDILDNLYNRISSMPRANEIKKGMVLNYNGKLLIVKDI DIQSPTARGAATLYKMRFSDVRTGLKVEERFKGDDIVDTVTLSRRGVDFSYVDGNEYV FMDKEDYTPYTFTKDQIEEELLFMPEGGMPDMQVLTWDGQLLALELPQTVDLEIVETA PGIKGASASARNKPATLSTGLVIQVPEYLSAGEKIRIHIEERRYMGRAD" misc_feature 2310723..2311292 /gene="yeiP" /locus_tag="STM2211" /note="elongation factor P; Provisional; Region: PRK04542" /db_xref="CDD:179863" gene 2311497..2312494 /gene="yeiR" /locus_tag="STM2212" /db_xref="GeneID:1253734" regulatory 2311497..2311502 /regulatory_class="ribosome_binding_site" /gene="yeiR" /locus_tag="STM2212" /note="putative RBS for yeiR; RegulonDB:STMS1H002351" CDS 2311508..2312494 /gene="yeiR" /locus_tag="STM2212" /note="similar to E. coli orf, hypothetical protein (AAC75234.1); Blastp hit to AAC75234.1 (328 aa), 87% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="putative cobalamin synthesis protein" /protein_id="NP_461156.1" /db_xref="GeneID:1253734" /translation="MTKTNLITGFLGSGKTTSILHLLAHKDPAEKWAVLVNEFGEVGI DGALLADSGALLKEIPGGCMCCVNGLPMQVGLNTLLRQGKPDRLLIEPTGLGHPKQIL DLLTAPVYEPWIDLRATLCILDPRLLLDQQSVANENFRDQLASADIIIANKTDRATAQ SDAALQQWWRQYGGDRQLIHAEHGQIDGKLLDLPRQNLAELPASAAHSHTHASKKGLA ALNLPAQQRWRRSLNSGQGHQACGWIFDADTVFDTIGLLEWARLAPVGRVKGVMRIQE GLVRINRQGDDLHIETQSVAPPDSRVELISNTETDWNTLQTALLKLRLATHA" misc_feature 2311508..2312479 /gene="yeiR" /locus_tag="STM2212" /note="Zinc metallochaperone YeiR/ZagA and related GTPases, G3E family [General function prediction only]; Region: YejR; COG0523" /db_xref="CDD:440289" gene 2312516..2313243 /gene="yeiU" /locus_tag="STM2213" /db_xref="GeneID:1253735" regulatory 2312516..2312521 /regulatory_class="ribosome_binding_site" /gene="yeiU" /locus_tag="STM2213" /note="putative RBS for yeiU; RegulonDB:STMS1H002352" CDS 2312524..2313243 /gene="yeiU" /locus_tag="STM2213" /note="similar to E. coli orf, hypothetical protein (AAC75235.1); Blastp hit to AAC75235.1 (249 aa), 83% identity in aa 20 - 249" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_461157.1" /db_xref="GeneID:1253735" /translation="MTMKTRYSLIILLNAAGLALFLSWYLPVNHGFWFTIDSGIFHFF NQKLVESHAFLWWVAITNNRAFDGCSLLAMGGLMLSFWLKENASGRRRIVIIGLVMLL TAVVLNQLGQALIPVKRASPTLSFEHIYRVSELLHIPTKDASKDSFPGDHGMMLLIFS AFMLRYFGKTAGIIALIIFVVFAFPRVMIGAHWFTDIVVGSLTVILIGLPWWLMTPLS DRAIALFENYLPGGNKQILNK" misc_feature 2312821..2313159 /gene="yeiU" /locus_tag="STM2213" /note="Acid phosphatase homologues; Region: acidPPc; smart00014" /db_xref="CDD:214471" misc_feature order(2312857..2312859,2312878..2312880,2312971..2312979, 2313079..2313081,2313097..2313099,2313109..2313111) /gene="yeiU" /locus_tag="STM2213" /note="active site" /db_xref="CDD:238813" gene 2313640..2314229 /gene="spr" /locus_tag="STM2214" /db_xref="GeneID:1253736" regulatory 2313640..2313645 /regulatory_class="ribosome_binding_site" /gene="spr" /locus_tag="STM2214" /note="putative RBS for spr; RegulonDB:STMS1H002353" CDS 2313657..2314229 /gene="spr" /locus_tag="STM2214" /note="suppresses thermosensitivity of prc mutants at low osmolality; similar to E. coli putative lipoprotein (AAC75236.1); Blastp hit to AAC75236.1 (188 aa), 92% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_461158.1" /db_xref="GeneID:1253736" /translation="MVKSQPILRYILRGIPAIAVAVLLSACSTTTNTAKNMHSETHAV GNSDSSSLQASQDEFENMVRNLDVKSRIMDQYADWKGVRYRLGGSTKKGVDCSSFVQR TFREQFGLELPRSTYEQQEMGKAVSRNNLRTGDLVLFRAGSTGRHVGIYIGNNQFVHA STSSGVIISSMNEPYWKKRYNEARRVLSRS" misc_feature 2313660..2314226 /gene="spr" /locus_tag="STM2214" /note="bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase; Region: spr; PRK10838" /db_xref="CDD:236773" gene 2314547..2316111 /gene="rtn" /locus_tag="STM2215" /db_xref="GeneID:1253737" regulatory 2314547..2314552 /regulatory_class="ribosome_binding_site" /gene="rtn" /locus_tag="STM2215" /note="putative RBS for rtn; RegulonDB:STMS1H002354" CDS 2314555..2316111 /gene="rtn" /locus_tag="STM2215" /note="similar to E. coli orf, hypothetical protein (AAC75237.1); Blastp hit to AAC75237.1 (518 aa), 70% identity in aa 1 - 518" /codon_start=1 /transl_table=11 /product="putative membrane protein involved in resistance to lambda and N4 phages" /protein_id="NP_461159.1" /db_xref="GeneID:1253737" /translation="MLTRDSSSGRKILLTCIITGIAAALLIGSLQFFLSWHKRDVKYN TLLSDVQHYLASYFADLKATTDILQPLTINTCQQVGAELTSRAAFSLNVRAFLLIKDK KVFCSSATGAMNMPLQQLVPDIDIRKDVAMAILPGTPMMPNKPTMVIWYRNPLLNDSG VFTSLNINLTPYLLYTTRQDDFNGIALIVGNTALSTFSSRLLTVAELPGTPSRLATIN GLPLKIRLYADSWTYNDLWYALMLGCISGIVAGFICYFIYALRTRPGKEILTAIKHEQ FYVVYQPVVDTRTLSVTGLEVLLRWRHPTAGEIPPDAFIHYAEAQQLIVPLTQHLFEL IARDAPTLQKVMPVGAKFGINIAPEHLHSDSFKEDMHRLRDALPAHHFHIVLEITERD MLQQYEAAKLFEWLHSAGFEIAIDDFGTGHSALIYLERFTLDYLKIDRGFIQAIGTET VTSPVLDTVLTLSRRLNMLTVAEGVETPEQARWLRDHGVNYLQGYWISRPLPLKDFVL WMSAPSVPEW" misc_feature 2314555..2316108 /gene="rtn" /locus_tag="STM2215" /note="cyclic di-GMP phosphodiesterase; Region: PRK10551" /db_xref="CDD:182541" gene 2316201..2318023 /gene="yejA" /locus_tag="STM2216" /db_xref="GeneID:1253738" regulatory 2316201..2316206 /regulatory_class="ribosome_binding_site" /gene="yejA" /locus_tag="STM2216" /note="putative RBS for yejA; RegulonDB:STMS1H002355" CDS 2316218..2318023 /gene="yejA" /locus_tag="STM2216" /note="similar to E. coli orf, hypothetical protein (AAC75238.1); Blastp hit to AAC75238.1 (606 aa), 86% identity in aa 3 - 603" /codon_start=1 /transl_table=11 /product="putative ABC transporter periplasmic binding protein" /protein_id="NP_461160.1" /db_xref="GeneID:1253738" /translation="MIARVMLLLVALVSAGAQAQEIKESYAFAVLGEPKYAFNFEHFD YVNPAAPKGGQMTLSAIGTFDNFNRYSLRGNPGVRTEALYDTLFTTSDDEPGSYYPLI ADHARYAADYSWVEISINPRARFHDGTPITARDVAFTFHKFMTEGVPQFRLVYKGTTV KAIAPLTVRIELAKPGKEDMLSLFSLPIMPEKFWKNHKLSDPLSTPPLASGPYRITQW KMGQYIVYSRVKNYWAANLPVNRGRFNLDTIRYDYYLDDNVAFEAFKAGAFDLRLEND AKNWATRYIGKNFDNHYIIKEEQKNESAQDTRWLAFNIQRPVFKDRRVREAVTLAFDF EWMNKALFYNAWSRTNSYFQNTEYAARNYPDADELVLLAPMKKDLPPEVFTQIYQPPV SNGDGYDRENLLKADALLTQAGWVINGQQRVNSVTGKPLTFELLLPASSNSQWVLPFQ HNLQRLGITMTIRQVDNSQLTNRMRSRDYDMMPRLWRAMPWPSSDLQISWASEYIDSS YNAPGVQSPVVDKLIAQIIAAQGDKAKLVPLGRALDRVLTWNYYMLPMWYMAQDRLAR WDKFSHPAIRPVYTIGLDTWWYDVNKAAKLPAARR" misc_feature 2316332..2317936 /gene="yejA" /locus_tag="STM2216" /note="Methanobactin MbnE, a periplasmic binding protein of the TonB-dependent transport system, and similar proteins; Region: MbnE-like; cd08497" /db_xref="CDD:173862" gene 2318014..2319127 /gene="yejB" /locus_tag="STM2217" /db_xref="GeneID:1253739" regulatory 2318014..2318019 /regulatory_class="ribosome_binding_site" /gene="yejB" /locus_tag="STM2217" /note="putative RBS for yejB; RegulonDB:STMS1H002356" CDS 2318033..2319127 /gene="yejB" /locus_tag="STM2217" /note="similar to E. coli putative transport system permease protein (AAC75239.1); Blastp hit to AAC75239.1 (364 aa), 96% identity in aa 1 - 364" /codon_start=1 /transl_table=11 /product="putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease component" /protein_id="NP_461161.1" /db_xref="GeneID:1253739" /translation="MGAYLIRRLLLVIPTLWAIITINFFIVQIAPGGPVDQAIAAIEF GQGGALPGASGEGVRASHAQTGVGNISDSHYRGGRGLDPEVIAEITHRYGFDKPLHER YFKMLRDYLSFDFGDSLFRSASVLTLIKDSLPVSITLGLWSTLIIYLVSIPLGIRKAV HNGSRFDVWSSAFIIIGYAIPAFLFAILLIVFFAGGSYYDIFPLRGLVSANFDTLPWY QKITDYLWHITLPVLATVIGGFAALTMLTKNSFLDEVRKQYVVTARAKGVSEKNILWK HVFRNAMLLVIAGFPATFISMFFTGSLLIEVMFSLNGLGLLGYEATVSRDYPVMFGTL YIFTLIGLLLNILSDISYTLVDPRIDFEGR" misc_feature 2318033..2319124 /gene="yejB" /locus_tag="STM2217" /note="microcin C ABC transporter permease YejB; Provisional; Region: PRK15133" /db_xref="CDD:185087" misc_feature order(2318477..2318482,2318489..2318494,2318510..2318512, 2318540..2318551,2318555..2318584,2318591..2318596, 2318600..2318602,2318744..2318749,2318753..2318755, 2318759..2318761,2318768..2318773,2318777..2318779, 2318789..2318794,2318801..2318803,2318852..2318854, 2318894..2318899,2318906..2318908,2318933..2318944, 2318951..2318956,2318993..2318998,2319032..2319037, 2319044..2319049,2319053..2319058,2319065..2319070, 2319077..2319082) /gene="yejB" /locus_tag="STM2217" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(2318558..2318602,2318933..2318950) /gene="yejB" /locus_tag="STM2217" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(2318600..2318602,2318729..2318731,2318951..2318953, 2318987..2318989,2318996..2318998,2319032..2319034) /gene="yejB" /locus_tag="STM2217" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(2318804..2318842,2318858..2318863,2318873..2318875) /gene="yejB" /locus_tag="STM2217" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 2319116..2320152 /gene="yejE" /locus_tag="STM2218" /db_xref="GeneID:1253740" regulatory 2319116..2319121 /regulatory_class="ribosome_binding_site" /gene="yejE" /locus_tag="STM2218" /note="putative RBS for yejE; RegulonDB:STMS1H002357" CDS 2319127..2320152 /gene="yejE" /locus_tag="STM2218" /note="similar to E. coli putative transport system permease protein (AAC75240.1); Blastp hit to AAC75240.1 (341 aa), 91% identity in aa 1 - 341" /codon_start=1 /transl_table=11 /product="putative ABC-type dipeptide/oligopeptide/nickel transport systems, permease component" /protein_id="NP_461162.1" /db_xref="GeneID:1253740" /translation="MPRLSPVNQARWARFRHNRRGYWSLWIFLVVFSLSLCAELIAND KPLLVRYEGQWYFPLVKNYSERDFGGPLATTADYQDPWLQRQLENRGWVLWAPVRFSA NTINFATTQPFPSPPSAKNWLGTDANGGDVFARILYGTRISILFGLMLTICSSVMGVL AGALQGYYGGKVDLWGQRLIEVWSGMPTLFLIILLSSVVQPNFWWLLAITVLFGWMSL VGVVRAEFLRTRNFDYIRAAQALGVSDRDIILRHMLPNAMVATLTFLPFILCSSITTL TSLDFLGFGLPLGSPSLGELLLQGKNNLQAPWLGIAAFLSVAILLSLLIFIGEAVRDA FDPAKAV" misc_feature 2319127..2320149 /gene="yejE" /locus_tag="STM2218" /note="microcin C ABC transporter permease; Provisional; Region: PRK15021" /db_xref="CDD:184982" gene 2320141..2321743 /gene="yejF" /locus_tag="STM2219" /db_xref="GeneID:1253741" regulatory 2320141..2320146 /regulatory_class="ribosome_binding_site" /gene="yejE" /locus_tag="STM2218" /note="putative RBS for yejF; RegulonDB:STMS1H002358" CDS 2320154..2321743 /gene="yejF" /locus_tag="STM2219" /note="contains duplicated ATPase domain; similar to E. coli putative ATP-binding component of a transport system (AAC75241.1); Blastp hit to AAC75241.1 (529 aa), 86% identity in aa 1 - 529" /codon_start=1 /transl_table=11 /product="putative ATPase component of ABC-type transport system" /protein_id="NP_461163.1" /db_xref="GeneID:1253741" /translation="MTSPLLAIENLSVGFRQQQHVRPVVNAISLQVNAGETLALVGES GSGKSVTALSILRLLPTPPAVYLSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM VSLNPLHTLEKQLYEVLSLHRGMSREAARAEMIGCLDRVGIRQASQRLRDYPHQLSGG ERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILSLLRELQRELNMGLLFITHNLS IVKKLADSVAVMQHGKCVENQRADTLLSAPTHPYTQKLLNSEPTGDPVPLPAGQAPLL EVDKLRVAFPIRKGILKRVVDHNVVVNNISFTLHPGETLGLVGESGSGKSTTGLALLR LIRSEGRIVFDGQSLDTLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVH QPTLSGAQREQQVKAVMMEVGLDPETRHRYPAEFSGGQRQRIAVARALILKPSLIILD EPTSSLDKTVQAQILALLKSLQQKHRLAYIFISHDLHVVRALCHQVIVLRQGEVVEQG QCERVFTAPQQAYTRQLLALS" misc_feature 2320154..2321740 /gene="yejF" /locus_tag="STM2219" /note="microcin C ABC transporter ATP-binding protein YejF; Provisional; Region: PRK15134" /db_xref="CDD:237917" gene complement(2321747..2322104) /gene="yejG" /locus_tag="STM2220" /db_xref="GeneID:1253742" CDS complement(2321747..2322091) /gene="yejG" /locus_tag="STM2220" /note="similar to E. coli orf, hypothetical protein (AAC75242.1); Blastp hit to AAC75242.1 (114 aa), 90% identity in aa 1 - 114" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461164.1" /db_xref="GeneID:1253742" /translation="MNTLQLSIVHRLPQNYRWSAGFAGSKVEPIPQNGQSTENSLVAL KLLSPAGDSAWSVMHKLSQALSDIEVPCSVLECEGEPCLFVNRQDEFAATCRLKNFGV AIAEPFSNNNPF" misc_feature complement(2321750..2322091) /gene="yejG" /locus_tag="STM2220" /note="hypothetical protein; Provisional; Region: PRK11835" /db_xref="CDD:183333" regulatory complement(2322099..2322104) /regulatory_class="ribosome_binding_site" /gene="yejG" /locus_tag="STM2220" /note="putative RBS for yejG; RegulonDB:STMS1H002359" gene complement(2322482..2323684) /gene="bcr" /locus_tag="STM2221" /db_xref="GeneID:1253743" CDS complement(2322482..2323672) /gene="bcr" /locus_tag="STM2221" /note="MFS family multidrug transport protein; similar to E. coli bicyclomycin resistance protein; transmembrane protein (AAC75243.1); Blastp hit to AAC75243.1 (396 aa), 93% identity in aa 1 - 396" /codon_start=1 /transl_table=11 /product="bicyclomycin resistance protein" /protein_id="NP_461165.1" /db_xref="GeneID:1253743" /translation="MTTRQHSSFAIVFILGLLAMLMPLSIDMYLPALPVISAQFGVPA GSAQMTLSTYILGFALGQLIYGPMADSLGRKPVILGGTLVFAAAAVACALAQTIDQLI VMRFFHGLAAAAASVVINALMRDIYPKEEFSRMMSFVMLVTTIAPLMAPIVGGWVLVW LSWHYIFWILAIAAILASVMIFALIKETLPVERRQPFHIRTTIGNFAALFRHKRVLSY MLASGFSFAGMFSFLSAGPFVYIEINHVPPQDFGYYFALNIVFLFVMTIINSRFVRRV GALNMFRAGLWIQFAMAVWMVFSALMGIGFWALVVGVAAFVGCVSMVSSNAMAVILDE FPHMAGTASSLAGTFRFGIGAIVGALLSLATFNSAWPMIWSIALCAACSILFYLYASR PKKR" misc_feature complement(2322485..2323615) /gene="bcr" /locus_tag="STM2221" /note="Bcr/CflA family multidrug efflux MFS transporter; Region: PRK11102" /db_xref="CDD:182964" regulatory complement(2323679..2323684) /regulatory_class="ribosome_binding_site" /gene="bcr" /locus_tag="STM2221" /note="putative RBS for bcr; RegulonDB:STMS1H002360" gene complement(2323700..2324412) /gene="rsuA" /locus_tag="STM2222" /db_xref="GeneID:1253744" CDS complement(2323700..2324395) /gene="rsuA" /locus_tag="STM2222" /EC_number="4.2.1.70" /note="similar to E. coli 16S pseudouridylate 516 synthase (AAC75244.1); Blastp hit to AAC75244.1 (231 aa), 94% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="16S rRNA pseudouridylate 516 synthase" /protein_id="NP_461166.1" /db_xref="GeneID:1253744" /translation="MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGDIIKNAAFKLLPE HAVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAYKLHAAGRLD IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAAQFAKGVQLHNEKDL TKPATLEVITPVQVRLTISEGRYHQVKRMFAAVGNRVVELHRERIGAITLDENLAPGE YRPLTEEEIASVG" misc_feature complement(2323703..2324395) /gene="rsuA" /locus_tag="STM2222" /note="16S rRNA pseudouridine(516) synthase RsuA; Region: PRK10839" /db_xref="CDD:236774" regulatory complement(2324407..2324412) /regulatory_class="ribosome_binding_site" /gene="rsuA" /locus_tag="STM2222" /note="putative RBS for rsuA; RegulonDB:STMS1H002361" gene 2324547..2326307 /gene="yejH" /locus_tag="STM2223" /db_xref="GeneID:1253745" CDS 2324547..2326307 /gene="yejH" /locus_tag="STM2223" /note="similar to E. coli putative ATP-dependent helicase (AAC75245.1); Blastp hit to AAC75245.1 (586 aa), 95% identity in aa 1 - 586" /codon_start=1 /transl_table=11 /product="putative ATP-dependent helicase" /protein_id="NP_461167.1" /db_xref="GeneID:1253745" /translation="MIFTLRPYQQEAVDATLSHFRRHRTPAVIVLPTGAGKSLVIAEL ARVARGRVLVLAHVKELVAQNHAKYCALGLEADIFAAGLKRKESQGKVVFGSVQSVAR NLDAFQEEFSLLIVDECHRIGDDEDSQYQQILTHLSKVNPHLRLLGLTATPFRLGKGW IYQFHYHGMVRGNDNALFRDCIYELPLRYMIKHGYLTPPERLDMPVVQYDFSRLQAQS NGLFSEADLNRELKKQQRITPHIISQIMEFAQTRKGVMIFAATVEHAKEIVGLLPADD AALITGDTPGPERDALIDNFKAQRFRYLVNVSVLTTGFDAPHVDLIAILRPTESVSLY QQIVGRGLRLAPGKTDCLILDYAGNPHDLYAPEVGSPKGKSDNVPVQVFCPACGFANT FWGKTTADGTLIEHFGRRCQGWFEDDDGHREQCDFRFRFKNCPQCNAENDIAARRCRE CDAILVDPDDMLKAALRLKDALVLRCSGMTMQHGQDEKGEWLKITYYDEDGADVSERF RLHTPAQRTAFEQLFIRPHTRTPGVPLRWITAADIVAQQALLRHPDFVVARMKGQYWQ VREKVFDYEGRFRRAHELRG" misc_feature 2324553..2326133 /gene="yejH" /locus_tag="STM2223" /note="Superfamily II DNA or RNA helicase [Transcription, Replication, recombination, and repair]; Region: SSL2; COG1061" /db_xref="CDD:440681" gene 2326421..2326716 /gene="rplY" /locus_tag="STM2224" /db_xref="GeneID:1253746" regulatory 2326421..2326426 /regulatory_class="ribosome_binding_site" /gene="rplY" /locus_tag="STM2224" /note="putative RBS for rplY; RegulonDB:STMS1H002362" CDS 2326432..2326716 /gene="rplY" /locus_tag="STM2224" /note="similar to E. coli 50S ribosomal subunit protein L25 (AAC75246.1); Blastp hit to AAC75246.1 (94 aa), 91% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L25" /protein_id="NP_461168.1" /db_xref="GeneID:1253746" /translation="MFTINAEVRKEQGKGASRRLRAANKFPAIIYGGSEAPIAIELDH DQVMNMQAKAEFYSEVLTLVVDGKEVKVKAQAVQRHAYKPKLTHIDFVRA" misc_feature 2326432..2326713 /gene="rplY" /locus_tag="STM2224" /note="50S ribosomal protein L25; Reviewed; Region: PRK05943" /db_xref="CDD:180318" misc_feature order(2326456..2326458,2326480..2326488,2326492..2326494, 2326522..2326530,2326540..2326542,2326654..2326659, 2326663..2326665,2326693..2326695,2326699..2326701, 2326705..2326707) /gene="rplY" /locus_tag="STM2224" /note="5S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:198379" misc_feature order(2326528..2326530,2326606..2326608,2326642..2326644, 2326654..2326656,2326705..2326710) /gene="rplY" /locus_tag="STM2224" /note="CTC domain interface [polypeptide binding]; other site" /db_xref="CDD:198379" misc_feature order(2326648..2326653,2326660..2326662,2326681..2326683, 2326705..2326707) /gene="rplY" /locus_tag="STM2224" /note="L16 interface [polypeptide binding]; other site" /db_xref="CDD:198379" gene complement(2326825..2327451) /locus_tag="STM2225" /db_xref="GeneID:1253747" CDS complement(2326825..2327445) /locus_tag="STM2225" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461169.1" /db_xref="GeneID:1253747" /translation="MSKGIRQRPPVNFSLFRQVLYAHIVAFLMMLMLGMVFTVLSLVL FYTYGTNWLLSLFICPLFLLSGLFITGFAFKSTWSSIRYYYDKGQLKRYGLNLDATLT HKEKVEIRIDNAKRQVRVDELELHVLFDFQFDSKTWSCGDLLTNEKVFDALNDGQTIP IRILPWKPESASVRQRALFNRLKGMNTAAETTDPRLGEALIECGEV" regulatory complement(2327446..2327451) /regulatory_class="ribosome_binding_site" /locus_tag="STM2225" /note="putative RBS for STM2225; RegulonDB:STMS1H002363" gene complement(2327473..2328494) /gene="yejK" /locus_tag="STM2226" /db_xref="GeneID:1253748" CDS complement(2327473..2328480) /gene="yejK" /locus_tag="STM2226" /note="present in spermidine nucleoids; similar to E. coli orf, hypothetical protein (AAC75247.1); Blastp hit to AAC75247.1 (335 aa), 96% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="nucleotide associated protein" /protein_id="NP_461170.1" /db_xref="GeneID:1253748" /translation="MSLDINQIALHQLIKRDEQNLELVLRDSLLEPTTTVVEMVAELH RVYSAKNKAYGLFNEESELAQALRLQRQGEEDFLAFSRAATGRLRDELAKYPFADGGI VLFCHYRYLAVEYLLVTVLNNLSSMRVNENLDINPTHYLDINHADIVARIDLTEWETN PQSTRYLTFLKGRVGRKVADFFMDFLGASEGLNAKAQNRGLLQAVDDFTAEAQLDKAE RQNVRQQVYSYCNEQLQAGEEIELESLSKELSGVSEVSFSEFTAEKGYELEESFPADR STLRQLTKYAGSGGGLTINFDAMLLGERIFWDPATDTLTIKGTPPNLRDQLQRRTSGG K" misc_feature complement(2327479..2328480) /gene="yejK" /locus_tag="STM2226" /note="nucleoid-associated protein NdpA; Validated; Region: PRK00378" /db_xref="CDD:178993" regulatory complement(2328489..2328494) /regulatory_class="ribosome_binding_site" /gene="yejK" /locus_tag="STM2226" /note="putative RBS for yejK; RegulonDB:STMS1H002364" gene 2328647..2328887 /gene="yejL" /locus_tag="STM2227" /db_xref="GeneID:1253749" regulatory 2328647..2328652 /regulatory_class="ribosome_binding_site" /gene="yejL" /locus_tag="STM2227" /note="putative RBS for yejL; RegulonDB:STMS1H002365" CDS 2328660..2328887 /gene="yejL" /locus_tag="STM2227" /note="similar to E. coli orf, hypothetical protein (AAC75248.1); Blastp hit to AAC75248.1 (75 aa), 90% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461171.1" /db_xref="GeneID:1253749" /translation="MPQLSRYSDEHVEQLLSELLSVLEKHKAPTDLSLMVLGNMVTNL INTSVAPAQRQAIANSFARALQSSISEDNAH" misc_feature 2328660..2328884 /gene="yejL" /locus_tag="STM2227" /note="hypothetical protein; Provisional; Region: PRK13689" /db_xref="CDD:237471" gene 2328901..2330679 /gene="yejM" /locus_tag="STM2228" /db_xref="GeneID:1253750" regulatory 2328901..2328906 /regulatory_class="ribosome_binding_site" /gene="yejM" /locus_tag="STM2228" /note="putative RBS for yejM; RegulonDB:STMS1H002366" CDS 2328919..2330679 /gene="yejM" /locus_tag="STM2228" /note="hypothetical protein in rplY-proL intergenic region. (SW:YEJM_SALTY)" /codon_start=1 /transl_table=11 /product="putative hydrolase of alkaline phosphatase superfamily" /protein_id="NP_461172.1" /db_xref="GeneID:1253750" /translation="MVTHRQRYREKVSQMVSWGHWFALFNILLATLLGSRYLFVADWP TTLAGRIYSYLSIVGHFSFLVFATYLLILFPLTFIVMSQRLMRFLSAILATAGMTLLL IDSEVFTRFHLHLNPIVWELVINPDQNEMARDWQLMFISVPVILLIEMLFATWSWQKL RSLTRRRHFARPLAAFFFVSFIASHLIYIWADANFYRPITMQRANLPLSYPMTARRFL EKHGLLDAQEYQRRLVEQGNPEAVSVQYPLSNLHYRDMGTGQNVLLITVDGLNYSRFE KQMPELATFAEQNIDFTRHMSSGNTTDNGIFGLFYGISPGYMDGVLSTRTPAALITAL NQQGYQLGLFSSDGFASPLYRQALLSDFSMPAAQTQSDAQTASQWIDWLGRYAQEDNR WFSWISFNGTNIDDSNQKNFVKRYASAASDVDAQINRVLNALREAGKFDNTVVIITAG RGIPLTPEENRFDWSQGHLQVPLVIHWPGTPAQRINVLTDHTDVMTTLMQRLLHVSTP ANEYSQGQDIFTVPRRHNWVTAADGSTLAITTPQMTLVLNNNGHYQTYDLHGEKIKDQ KPQLSLLLQVLTEEKRFIAN" misc_feature 2328919..2330676 /gene="yejM" /locus_tag="STM2228" /note="LPS biosynthesis-modulating metalloenzyme YejM; Region: LapC_YejM_PbgA; NF038282" /db_xref="CDD:468449" gene 2330748..2330821 /locus_tag="STM2229" /db_xref="GeneID:1253751" tRNA 2330748..2330821 /locus_tag="STM2229" /product="tRNA-Pro" /db_xref="GeneID:1253751" gene complement(2330960..2331469) /locus_tag="STM2230" /db_xref="GeneID:1253752" CDS complement(2330960..2331463) /locus_tag="STM2230" /EC_number="3.4.21.-" /note="similar to E. coli SOS mutagenesis; error-prone repair; processed to UmuD'; forms complex with UmuC (AAC74267.1); Blastp hit to AAC74267.1 (139 aa), 38% identity in aa 22 - 139" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_461173.3" /db_xref="GeneID:1253752" /translation="MKQANEWIEWYVTTFRDVSTQEGETYLSAVQSKRRTIAMGFPSP ASDYVETRISLDQQLISQPAATYFMRASRSHFREGIIQGALLVVDASLSACDGSLLIC AIDGEFRIKRYRTHPQPHLINLENGRKEALPEDGDGYNSSHAIFGVITYIINDARNAE FDDCPVM" misc_feature complement(2330993..2331346) /locus_tag="STM2230" /note="The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families. The S24 LexA protein domains include: the lambda repressor CI/C2 family and related bacterial prophage repressor proteins; LexA (EC 3.4.21.88), the...; Region: Peptidase_S24_S26; cl10465" /db_xref="CDD:447902" misc_feature complement(order(2331131..2331133,2331239..2331241)) /locus_tag="STM2230" /note="Catalytic site [active]" /db_xref="CDD:119397" regulatory complement(2331464..2331469) /regulatory_class="ribosome_binding_site" /locus_tag="STM2230" /note="putative RBS for STM2230; RegulonDB:STMS1H002368" gene 2331491..2331781 /locus_tag="STM2231" /db_xref="GeneID:1253753" CDS 2331491..2331781 /locus_tag="STM2231" /note="similar to msgA; virulence protein msga (SW:MSGA_SALTY)" /codon_start=1 /transl_table=11 /product="ssrB-regulated factor" /protein_id="NP_461174.1" /db_xref="GeneID:1253753" /translation="MLDKPLCGDGLPAIRFLLYRSIPGYFNIDGLPGAKDIILGELTK RVHRIFPDADVRVKPMMTLPAINTDASKHEKEQISRTVQEMFEEAEFWLVSE" misc_feature 2331584..2331769 /locus_tag="STM2231" /note="DinI-like family; Region: DinI; pfam06183" /db_xref="CDD:428810" gene 2332124..2333958 /gene="oafA" /locus_tag="STM2232" /db_xref="GeneID:1253754" regulatory 2332124..2332129 /regulatory_class="ribosome_binding_site" /gene="oafA" /locus_tag="STM2232" /note="putative RBS for oafA; RegulonDB:STMS1H002369" CDS 2332129..2333958 /gene="oafA" /locus_tag="STM2232" /note="O-antigen five:" /codon_start=1 /transl_table=11 /product="acetylation of the O-antigen (LPS)" /protein_id="NP_461175.1" /db_xref="GeneID:1253754" /translation="MIYKKFRLDINGLRAFALISVVLYHFGVPYVSGGFIGVDVFFVI SGFLMTGIVLERVDHKGVLDFYIARFLRIVPALVFAILLLMIFGLFTLSTNEYEALSK NAISSLLFYSNNYYAIHSSYFDSSSEFNFLLHTWSLSVEWQFYILYPLLVIIVKKLRF PVGLSLSVILAMSLAITLMRVTGTKEDIFYLIPTRAWEMLAGGLVYIASVRYKMPEWI KHCEVYGIVLIVVAVVILHSNGYWPSYSALAPVLGASMVILANKQNSLFTSNRIAQWV GKISYSVYLWHWPVIVAMKHYDIEFSAINIFFGVIVSFALGDISYRTIENTLRKRVKL QFNIVLFSSTLALCLFVMFTKGVSFRFSDTLKQVVEYRMDNSPWRPDICFLNPDQDYS AFSKCQDKMTEKSFVVWGDSHAAHLMPGLKSVFGNSLNITQRTASLCPPIIGLQKDDR PYCKDINDMVAKEISDNKPTTVLMSALWPVYPMRDYLPETIKFLKDNKVKNIIIVGPF PVWKKTMIDTIEDMGINSGRTVPWSMTDETRNLRDNDKYLRELAKEHSLTYISPLETM CTESYCKAIIGNRIAYPIQYDNAHLTPEGSGWFIEEVKKQISK" misc_feature 2332138..2333127 /gene="oafA" /locus_tag="STM2232" /note="Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains [Cell wall/membrane/envelope biogenesis]; Region: OafA; COG1835" /db_xref="CDD:441440" misc_feature 2333275..2333943 /gene="oafA" /locus_tag="STM2232" /note="SGNH domain (fused to AT3 domains); Region: SGNH; pfam19040" /db_xref="CDD:436916" gene complement(2334012..2334468) /locus_tag="STM2233" /db_xref="GeneID:1253755" CDS complement(2334012..2334455) /locus_tag="STM2233" /note="similar to E. coli orf, hypothetical protein (AAC75413.1); Blastp hit to AAC75413.1 (146 aa), 46% identity in aa 5 - 146" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461176.1" /db_xref="GeneID:1253755" /translation="MSIICFSSTSNTYFSEENIPAYKASGLWSNDFYALTDEEVDKYY MKTPPKGMYLGSSNGRIAWVCIPPPTQDDLISAANQEKKKRIDQANEHMNSRRWPGKA ALGRLTGDELAQYNLWLDYLDALKAVDTSVAQNIACPIRKAIHIK" misc_feature complement(2334027..2334431) /locus_tag="STM2233" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; pfam02413" /db_xref="CDD:426761" regulatory complement(2334463..2334468) /regulatory_class="ribosome_binding_site" /locus_tag="STM2233" /note="putative RBS for STM2233; RegulonDB:STMS1H002370" gene complement(2334833..2335365) /locus_tag="STM2234" /db_xref="GeneID:1253756" CDS complement(2334833..2335360) /locus_tag="STM2234" /codon_start=1 /transl_table=11 /product="putative tail fiber assembly protein" /protein_id="NP_461177.1" /db_xref="GeneID:1253756" /translation="MRHFKNFTKTTELTLVQQKLSENCSIQFIQDESGVDWYVLQKLF QPDTLKIQYDKTGLIIAADKDATKLFPLNCSVVEFADTDIPDGFQPGNFTYSNGVIAP VQIDYVALATAERDRRMTSVTAKINQLVEAQDDGDITAAELSELTALREYRTKLRRLA LDVAPDINWPEYLNK" misc_feature complement(2334845..2335240) /locus_tag="STM2234" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; pfam02413" /db_xref="CDD:426761" regulatory complement(2335360..2335365) /regulatory_class="ribosome_binding_site" /locus_tag="STM2234" /note="putative RBS for STM2234; RegulonDB:STMS1H002371" gene complement(2335363..2336616) /locus_tag="STM2235" /db_xref="GeneID:1253757" CDS complement(2335363..2336604) /locus_tag="STM2235" /note="similar to E. coli orf, hypothetical protein (AAC74238.1); Blastp hit to AAC74238.1 (209 aa), 62% identity in aa 1 - 74" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461178.1" /db_xref="GeneID:1253757" /translation="MHRIDTPTAQKDKFGQGKNGFTNGDPATGRRATDLNSDMWDAVQ EEVCTVIEAAGIPLSKGEHTQLHAAIGRLIYEQVKTRLEKNQNGADIPNKPLFLQNVG LVDVLFKGDGRFLAGTFVSDAIDRTSIGARAATGCQFMRAHQAPDAPDQVSFWQIITL SEVVSPTTVVDVLAVSGNNVLFGHGTGTGITSWRQVAMLEGGAFTGGISAPNMRGDTL VTVGDGTGGMAKGDVDGAGFNGNNLNIKSWNGIGFQNSEDLAIRAYISTRLGVIAAAE NLQAGSAIFNKNGDVYGDIWGGGSGPGWLSAFVASKPARQYITMVGVYQNDKTKPFML HDDGSGVFLATTDMLSGYVQSIRFGAVEHGNLYRSPGFADQLGYVITGVENGDSNDTP DRIQRRLLQLKVNGQWYTVGA" misc_feature complement(<2335717..2335992) /locus_tag="STM2235" /note="Phage T4 tail fibre; Region: Phage_T4_gp36; pfam03903" /db_xref="CDD:397817" regulatory complement(2336611..2336616) /regulatory_class="ribosome_binding_site" /locus_tag="STM2235" /note="putative RBS for STM2235; RegulonDB:STMS1H002372" gene complement(2336665..2337190) /locus_tag="STM2236" /db_xref="GeneID:1253758" CDS complement(2336665..2337183) /locus_tag="STM2236" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461179.1" /db_xref="GeneID:1253758" /translation="MSEREIRCYSGEVRAETHDSEPSRIIGYGSVFDSRSELIFGSFR EIIRPGAFDEVLNDDVRALFNHDPNFILGRRSAGTLALTVDERGLRYDITAPETQTIR DLVLAPMQRGDINQSSFAFRVARDGEEWYQDEDGVVIREITRFSRLLDGRPVQAPAIL RSERGAILLLNV" misc_feature complement(2336710..2337150) /locus_tag="STM2236" /note="Caudovirus prohead serine protease; Region: Peptidase_S78; cl01521" /db_xref="CDD:470233" regulatory complement(2337185..2337190) /regulatory_class="ribosome_binding_site" /locus_tag="STM2236" /note="putative RBS for STM2236; RegulonDB:STMS1H002373" gene complement(2337197..2337533) /locus_tag="STM2237" /db_xref="GeneID:1253759" CDS complement(2337197..2337526) /locus_tag="STM2237" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461180.1" /db_xref="GeneID:1253759" /translation="MPHNPNTWPDLLELLQSWWRGDTPLGAVIMSIVMAGLRIAYFGS GGGWKRKMLEILLCGALTLTFASALEYVGWMSRNEARAFEDMNPKDGLDEMLVSVNAS RPAKTTI" misc_feature complement(<2337305..2337526) /locus_tag="STM2237" /note="Phage holin family (Lysis protein S); Region: Phage_holin_3_1; cl23991" /db_xref="CDD:451646" misc_feature complement(2337227..>2337310) /locus_tag="STM2237" /note="Phage portal protein; Region: Phage_portal; cl46435" /db_xref="CDD:480775" regulatory complement(2337528..2337533) /regulatory_class="ribosome_binding_site" /locus_tag="STM2237" /note="putative RBS for STM2237; RegulonDB:STMS1H002374" gene 2337817..2339154 /locus_tag="STM2238" /db_xref="GeneID:1253760" regulatory 2337817..2337822 /regulatory_class="ribosome_binding_site" /locus_tag="STM2238" /note="putative RBS for STM2238; RegulonDB:STMS1H002375" CDS 2337823..2339154 /locus_tag="STM2238" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461181.1" /db_xref="GeneID:1253760" /translation="MLETLSFTERDEFQRRNIAENIIKLLKPEADISPLVIDGAWGTG KSEFSIKLKNLIIEQETESKVVYVDAFKGDHAESPLLLITSAIASILPEEEKQNFIKR SLPAIRFGLKTVLKAGAGWFLRQEASEVAEEFQDAMKKASNAAIDGTIENILEDHMES EKNINSLKSCIEDISNKQKIVIIIDELDRCKPSFSTNIIETIKHIFDINNVFFILVTN TEQLKASINHIYGYSINSQKYLDKFIKYTITLPDTCLINGHNVCKTSVIYWDHLVGET TLLNKINSLVGSFICDLIQRTNLSLRETQTFSRNLNIFRLLNDNECKSNDPFINMIVV VAVFIHCFGDKEKLKQEITAESISYLADLLNIKEIPYSYERRSQIPEISIIFFGIIKD SITLNERFAPKSDEELKKFTNVYTDYEHLKFWSTTPRELMIKYINQMSFIQ" misc_feature 2337865..2338776 /locus_tag="STM2238" /note="KAP family P-loop domain; Region: KAP_NTPase; pfam07693" /db_xref="CDD:462231" gene complement(2339183..2339561) /locus_tag="STM2239" /db_xref="GeneID:1253761" CDS complement(2339183..2339551) /locus_tag="STM2239" /note="similar to antiterminator protein Q of phage P5; similar to E. coli orf, hypothetical protein (AAC73652.1); Blastp hit to AAC73652.1 (127 aa), 47% identity in aa 1 - 121" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461182.1" /db_xref="GeneID:1253761" /translation="MMRDIQMVLERWGAWAASDSSGVDYSPIAAGFKGLLPYTCKTRV ACSDNDALIVEGCLARLKQKRPDEHSLLVAHYLYRISKRKIAKVRGKDEKLVRIEIQL AEGFIDGCLSMLDLTLDMDV" misc_feature complement(2339195..2339548) /locus_tag="STM2239" /note="Phage antitermination protein Q; Region: Phage_antitermQ; pfam06530" /db_xref="CDD:428991" regulatory complement(2339556..2339561) /regulatory_class="ribosome_binding_site" /locus_tag="STM2239" /note="putative RBS for STM2239; RegulonDB:STMS1H002376" gene complement(2339566..2340564) /locus_tag="STM2240" /db_xref="GeneID:1253762" CDS complement(2339566..2340555) /locus_tag="STM2240" /note="similar to E. coli orf, hypothetical protein (AAC74633.1); Blastp hit to AAC74633.1 (362 aa), 84% identity in aa 251 - 362, 43% identity in aa 14 - 238" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461183.1" /db_xref="GeneID:1253762" /translation="MRALLTPEIAPRMGVVLFRPGSELMPLFMQGRVLLEPEPEQFSS FASGAVPAVSQPLADDPAVRDVFCNESVIYRAGGLDSLESWLLRGNGCQWPHSDWHSE QMTTMRHAPGAIRLCWHCDNLLREQFTERLKSIAVENTTKWVLSVVCRDLGFDDMHAV TLPELCWWMVRNNLAEVLPESAARKALRMPKAIVQSATRESEIVPSVLATSIVQDKAK KVLALRVDPESPESFMLRPKRRRWVNERYTRWVKSQPCTCCGKQADDPHHLIGYGQGG MGTKAHDLFVLPLCRTHHNELHADTVAFEEKYGSQLELIFRFIDRALAIGVLA" misc_feature complement(2339578..2340078) /locus_tag="STM2240" /note="Protein of unknown function (DUF968); Region: DUF968; cl23554" /db_xref="CDD:474016" regulatory complement(2340559..2340564) /regulatory_class="ribosome_binding_site" /locus_tag="STM2240" /note="putative RBS for STM2240; RegulonDB:STMS1H002377" gene complement(2340884..2343255) /gene="sspH2" /locus_tag="STM2241" /db_xref="GeneID:1253763" CDS complement(2340884..2343250) /gene="sspH2" /locus_tag="STM2241" /note="induced by the SPI-2 regulator ssrA/B" /codon_start=1 /transl_table=11 /product="Leucine-rich repeat protein" /protein_id="NP_461184.1" /db_xref="GeneID:1253763" /translation="MPFHIGSGCLPATISNRRIYRIAWSDTPPEMSSWEKMKEFFCST HQTEALECIWTICHPPAGTTREDVINRFELLRTLAYAGWEESIHSGQHGENYFCILDE DSQEILSVTLDDAGNYTVNCQGYSETHRLTLDTAQGEEGTGHAEGASGTFRTSFLPAT TAPQTPAEYDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPD CLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQL TSLPMLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGN RLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTV NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPARE GEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALR ANTFAMATEATSSCEDRVTFFLHQMKNVQLVHNAEKGQYDNDLAALVATGREMFRLGK LEQIAREKVRTLALVDEIEVWLAYQNKLKKSLGLTSVTSEMRFFDVSGVTVTDLQDAE LQVKAAEKSEFREWILQWGPLHRVLERKAPERVNALREKQISDYEETYRMLSDTELRP SGLVGNTDAERTIGARAMESAKKTFLDGLRPLVEEMLGSYLNVQWRRN" misc_feature complement(2340887..2343250) /gene="sspH2" /locus_tag="STM2241" /note="type III secretion system effector E3 ubiquitin transferase SspH2; Region: PRK15387" /db_xref="CDD:185285" misc_feature complement(2342585..2342638) /gene="sspH2" /locus_tag="STM2241" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275378" misc_feature complement(2342342..2342401) /gene="sspH2" /locus_tag="STM2241" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature complement(2342165..2342221) /gene="sspH2" /locus_tag="STM2241" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature complement(2342042..2342101) /gene="sspH2" /locus_tag="STM2241" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature complement(2341970..2342041) /gene="sspH2" /locus_tag="STM2241" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275380" misc_feature complement(2341859..2341912) /gene="sspH2" /locus_tag="STM2241" /note="leucine-rich repeat [structural motif]; Region: leucine-rich repeat" /db_xref="CDD:275378" regulatory complement(2343250..2343255) /regulatory_class="ribosome_binding_site" /gene="sspH2" /locus_tag="STM2241" /note="putative RBS for sspH2; RegulonDB:STMS1H002378" gene complement(2343419..2343626) /locus_tag="STM2242" /db_xref="GeneID:1253764" CDS complement(2343419..2343622) /locus_tag="STM2242" /codon_start=1 /transl_table=11 /product="putative tail fiber protein of phage" /protein_id="NP_461185.1" /db_xref="GeneID:1253764" /translation="MPDTDENRRADIHAAGSLKTVKSFKGFIRRKSCAGRQNRKLNAR ALIPDDLVIVESDPEKIDTLAVK" regulatory complement(2343621..2343626) /regulatory_class="ribosome_binding_site" /locus_tag="STM2242" /note="putative RBS for STM2242; RegulonDB:STMS1H002379" gene complement(2343919..2344717) /locus_tag="STM2243" /db_xref="GeneID:1253765" CDS complement(2343919..2344710) /locus_tag="STM2243" /note="similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 60% identity in aa 458 - 505, 24% identity in aa 369 - 530" /codon_start=1 /transl_table=11 /product="putative tail fiber protein of phage" /protein_id="NP_461186.1" /db_xref="GeneID:1253765" /translation="MISLEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVRT KAPLDSPAFTGTPTTPTPPGDAKGLQTTNAEFVRKLIAALVGSVLEPLDTLQELADAL GNDPNFATTVLNKLAGKQPLDETLTALSGKSVDGLIEYVGLRETISRAADALQKSQNG GDIPDKDLFVRRIGAARAFDGAVIIGCDDNPWTTAEFIVWLESQGAFNHPYWMCRGSW SYAYNKIITDTGCGNICLAGAVIEVMGVRGAMTIRVTTSHSVSGW" misc_feature complement(2344444..>2344701) /locus_tag="STM2243" /note="Phage-related tail fiber protein [Mobilome: prophages, transposons]; Region: COG5301" /db_xref="CDD:444101" misc_feature complement(2344576..2344689) /locus_tag="STM2243" /note="Phage tail fibre repeat; Region: Phage_fiber_2; pfam03406" /db_xref="CDD:427282" regulatory complement(2344712..2344717) /regulatory_class="ribosome_binding_site" /locus_tag="STM2243" /note="putative RBS for STM2243; RegulonDB:STMS1H002380" gene 2345007..2345216 /locus_tag="STM2244" /db_xref="GeneID:1253766" regulatory 2345007..2345012 /regulatory_class="ribosome_binding_site" /locus_tag="STM2244" /note="putative RBS for STM2244; RegulonDB:STMS1H002381" CDS 2345013..2345216 /locus_tag="STM2244" /note="virulence protein msga (SW:MSGA_SALTY)" /codon_start=1 /transl_table=11 /product="virulence protein MsgA-like protein" /protein_id="NP_461187.1" /db_xref="GeneID:1253766" /translation="MPTIKKLADARDVILHELILHELIGHLSCAVVTVKSMQATNVNH VCTKTEKAHLHPILEKMFAVAGK" gene complement(2345408..2345977) /locus_tag="STM2245" /db_xref="GeneID:1253767" CDS complement(2345408..2345971) /locus_tag="STM2245" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_461188.1" /db_xref="GeneID:1253767" /translation="MYMKRIFIYLLLPCAFACSANDNVFFGKGNKHQISFAAGESIRR GGVEHLYTAFLTYSEPSDFFFLQARNNLELGGFKAKGSDDCSKHSGSVPCNKYNQGVL GISKDVALVHFAGIYTGIGLGAYIKSKSRDDMRVNSAFTFGEKAFLGWNFGAFSTEAY IRHFSNGSLTDKNSGHNFVGASISYNF" misc_feature complement(2345414..>2345683) /locus_tag="STM2245" /note="Lipid A 3-O-deacylase (PagL); Region: PagL; pfam09411" /db_xref="CDD:462791" regulatory complement(2345972..2345977) /regulatory_class="ribosome_binding_site" /locus_tag="STM2245" /note="putative RBS for STM2245; RegulonDB:STMS1H002382" gene 2346688..2347348 /gene="narP" /locus_tag="STM2246" /db_xref="GeneID:1253768" regulatory 2346688..2346693 /regulatory_class="ribosome_binding_site" /gene="narP" /locus_tag="STM2246" /note="putative RBS for narP; RegulonDB:STMS1H002383" CDS 2346701..2347348 /gene="narP" /locus_tag="STM2246" /note="similar to E. coli nitrate/nitrite response regulator (sensor NarQ) (AAC75253.1); Blastp hit to AAC75253.1 (215 aa), 88% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with NarQ (or NarX)" /protein_id="NP_461189.1" /db_xref="GeneID:1253768" /translation="MPEVTPFQVLIVDDHPLMRRGIRQLLELDPAFHVVAEAGDGASA IDLANRIEPDLILLDLNMKGLSGLDTLNALRRDGVTAQIIILTVSDSASDIYALIDAG ADGYLLKDSDPEVLLEAIRKGANGGKVFSDRVNEYLRERERFGAQEDPFSILTERELD VLHELAQGLSNKQIASVLNISEQTVKVHIRNLLRKLNVRSRVAATILFLQTRGMQ" misc_feature 2346701..2347345 /gene="narP" /locus_tag="STM2246" /note="nitrate/nitrite response regulator protein NarP; Region: PRK10403" /db_xref="CDD:182431" gene complement(2347392..2348446) /gene="ccmH" /locus_tag="STM2247" /db_xref="GeneID:1253769" CDS complement(2347392..2348435) /gene="ccmH" /locus_tag="STM2247" /note="cytochrome c-type biogenesis; similar to E. coli possible subunit of heme lyase (AAC75254.1); Blastp hit to AAC75254.1 (350 aa), 73% identity in aa 1 - 342" /codon_start=1 /transl_table=11 /product="putative heme lyase subunit" /protein_id="NP_461190.1" /db_xref="GeneID:1253769" /translation="MRLLPGMVMLMLVLVIAGSARATTDVMPFKDEAQEQQFRQLTEQ LRCPKCQNNSIADSNAMIATDMRRRVYDLMQEGKSRQEIIDYMVARYGNFVTYDPPLT PLTVLLWVLPLATIVAGGWIIVARTRRRVRIRQDVLADAIPAAGPRAGWGAYVPGVVM ALVVAAISYSQTGSYPQVRAWQQATAQTPGLLARALDPQAQPLNEEEMARLALGLRTR LQNDAGNVEGWLMLGRTGMVLGNAGTATGAYANAYRLDPKNRDAALGYAEALTRSSDP EDNRRGGELLRQLVSRDHTDIRVLSLYAFSAFEQQRFGEAVAAWEMMLKLLPAGDARR AVIERSIRLAQEK" misc_feature complement(<2348070..2348408) /gene="ccmH" /locus_tag="STM2247" /note="Cytochrome C biogenesis protein; Region: CcmH; pfam03918" /db_xref="CDD:461092" misc_feature complement(order(2348286..2348288,2348295..2348297)) /gene="ccmH" /locus_tag="STM2247" /note="putative catalytic site [active]" /db_xref="CDD:319866" misc_feature complement(2347404..2347808) /gene="ccmH" /locus_tag="STM2247" /note="Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Region: NrfG; COG4235" /db_xref="CDD:443378" misc_feature complement(2347674..2347760) /gene="ccmH" /locus_tag="STM2247" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(order(2347509..2347511,2347518..2347523, 2347530..2347535,2347542..2347544,2347620..2347625, 2347629..2347634,2347641..2347646,2347653..2347655, 2347725..2347727,2347731..2347736,2347743..2347748, 2347755..2347757)) /gene="ccmH" /locus_tag="STM2247" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature complement(2347560..2347661) /gene="ccmH" /locus_tag="STM2247" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(2347461..2347547) /gene="ccmH" /locus_tag="STM2247" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene complement(2348432..2349000) /gene="ccmG" /locus_tag="STM2248" /db_xref="GeneID:1253770" CDS complement(2348432..2348989) /gene="ccmG" /locus_tag="STM2248" /note="cytochrome c-type biogenesis; similar to E. coli disulfide oxidoreductase (in biogenesis of cytochrome c? (AAC75255.1); Blastp hit to AAC75255.1 (185 aa), 87% identity in aa 1 - 185" /codon_start=1 /transl_table=11 /product="heme lyase/disulfide oxidoreductase" /protein_id="NP_461191.1" /db_xref="GeneID:1253770" /translation="MKRNVLLLPLLIFLLIAAALLWQLARNAQGDDPTNLESALTGKP VPAFRLESLETPGQYYQAEVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG LNYKDDRAKAVAWLKELGNPYALSLSDSDGMLGLDLGVYGAPETFLIDGRGIIRYRHA GDLNARVWESELKPLWDRYSREAAQ" misc_feature complement(2348435..2348989) /gene="ccmG" /locus_tag="STM2248" /note="thiol:disulfide interchange protein DsbE; Provisional; Region: PRK15412" /db_xref="CDD:185310" misc_feature complement(order(2348741..2348743,2348750..2348752)) /gene="ccmG" /locus_tag="STM2248" /note="catalytic residues [active]" /db_xref="CDD:239308" misc_feature complement(2348603..2348671) /gene="ccmG" /locus_tag="STM2248" /note="central insert [active]" /db_xref="CDD:239308" regulatory complement(2348441..2348446) /regulatory_class="ribosome_binding_site" /gene="ccmG" /locus_tag="STM2248" /note="putative RBS for ccmH; RegulonDB:STMS1H002384" gene complement(2348986..2350931) /gene="ccmF" /locus_tag="STM2249" /db_xref="GeneID:1253771" CDS complement(2348986..2350917) /gene="ccmF" /locus_tag="STM2249" /note="similar to E. coli cytochrome c-type biogenesis protein (AAC75256.1); Blastp hit to AAC75256.1 (647 aa), 85% identity in aa 1 - 646" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein" /protein_id="NP_461192.1" /db_xref="GeneID:1253771" /translation="MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAW LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLL MSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRD LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVF LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWT LLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRG HRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFN TMFTWLMVPFALLLGVGPLVRWGRDRPRNIRTLLLTALVSTLVLSVLLPWLLEDKIIA MTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYS VERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRL YNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGG LLCLADPRYRRRKPLPEAG" misc_feature complement(2348992..2350914) /gene="ccmF" /locus_tag="STM2249" /note="Cytochrome c biogenesis protein CcmF [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Region: CcmF; COG1138" /db_xref="CDD:440753" regulatory complement(2348995..2349000) /regulatory_class="ribosome_binding_site" /gene="ccmG" /locus_tag="STM2248" /note="putative RBS for ccmG; RegulonDB:STMS1H002385" gene complement(2350914..2351404) /gene="ccmE" /locus_tag="STM2250" /db_xref="GeneID:1253772" CDS complement(2350914..2351393) /gene="ccmE" /locus_tag="STM2250" /note="cytochrome c-type biogenesis protein; similar to E. coli cytochrome c biogenesis, possible subunit of a heme lyase (AAC75257.1); Blastp hit to AAC75257.1 (159 aa), 82% identity in aa 1 - 159" /codon_start=1 /transl_table=11 /product="periplasmic heme-dependent peroxidase" /protein_id="NP_461193.1" /db_xref="GeneID:1253772" /translation="MNLRRKNRLWVVCAVLAGLGLTTALVLYALRANIDLFYTPGEIL YGKRETQQLPAAGQRLRVGGMVMPGSVRRDPDSLKVNFSLYDAEGSVTVSYEGILPDL FREGQGVVVQGTLEKGNHVLAHEVLAKHDENYTPPEVEKAMQENHRRPQRADKDTSS" misc_feature complement(2350917..2351393) /gene="ccmE" /locus_tag="STM2250" /note="cytochrome c maturation protein CcmE; Region: PRK13150" /db_xref="CDD:139376" regulatory complement(2350926..2350931) /regulatory_class="ribosome_binding_site" /gene="ccmE" /locus_tag="STM2250" /note="putative RBS for ccmF; RegulonDB:STMS1H002386" gene complement(2351390..2351614) /gene="ccmD" /locus_tag="STM2251" /db_xref="GeneID:1253773" CDS complement(2351390..2351602) /gene="ccmD" /locus_tag="STM2251" /note="cytochrome c-type biogenesis protein; similar to E. coli heme exporter protein C (AAC75258.1); Blastp hit to AAC75258.1 (69 aa), 77% identity in aa 1 - 69" /codon_start=1 /transl_table=11 /product="heme exporter protein C" /protein_id="NP_461194.1" /db_xref="GeneID:1253773" /translation="MSPAFSSWSDFFAMGGYAFFVWLAVAMTVAPLALLALHTVLQRR AILRGVAQQRAREARMRAAQAQQEAA" misc_feature complement(<2351447..2351596) /gene="ccmD" /locus_tag="STM2251" /note="Heme exporter protein D [Intracellular trafficking, secretion, and vesicular transport]; Region: CcmD; COG3114" /db_xref="CDD:442348" regulatory complement(2351399..2351404) /regulatory_class="ribosome_binding_site" /gene="ccmD" /locus_tag="STM2251" /note="putative RBS for ccmE; RegulonDB:STMS1H002387" gene complement(2351599..2352356) /gene="ccmC" /locus_tag="STM2252" /db_xref="GeneID:1253774" CDS complement(2351599..2352336) /gene="ccmC" /locus_tag="STM2252" /note="ABC superfamily (membrane); cytochrome c-type biogenesis protein; similar to E. coli heme exporter protein C (AAC75259.1); Blastp hit to AAC75259.1 (245 aa), 86% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="heme exporter protein" /protein_id="NP_461195.1" /db_xref="GeneID:1253774" /translation="MWKTLHQLAAPPRLYQICGRLVPWLAAAGIIVLATGWVRGFGFA PADYQQGEGYRIMYLHVPAAIWSMGIYAAMAVAAFTGLVWQMKMASLAVAAMAPVGAV YTFIALVTGAAWGKPMWGTWWVWDARLTSELVLLFLYAGVIALWHAFDDRKMAGRAAG ILVLVGVVNLPVIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWAIAGYLLLFMTLSL MRMRNLILLMEKRRPWVSELILKRGHR" misc_feature complement(2351662..2352204) /gene="ccmC" /locus_tag="STM2252" /note="heme exporter protein CcmC; Region: ccmC; TIGR01191" /db_xref="CDD:273492" regulatory complement(2351609..2351614) /regulatory_class="ribosome_binding_site" /gene="ccmD" /locus_tag="STM2251" /note="putative RBS for ccmD; RegulonDB:STMS1H002388" regulatory complement(2352351..2352356) /regulatory_class="ribosome_binding_site" /gene="ccmC" /locus_tag="STM2252" /note="putative RBS for ccmC; RegulonDB:STMS1H002389" gene complement(2352388..2353063) /gene="ccmB" /locus_tag="STM2253" /db_xref="GeneID:1253775" CDS complement(2352388..2353047) /gene="ccmB" /locus_tag="STM2253" /note="cytochrome c-type biogenesis protein; similar to E. coli heme exporter protein B, cytochrome c-type biogenesis protein (AAC75260.1); Blastp hit to AAC75260.1 (220 aa), 84% identity in aa 2 - 220" /codon_start=1 /transl_table=11 /product="ABC superfamily (membrane) heme exporter protein" /protein_id="NP_461196.1" /db_xref="GeneID:1253775" /translation="MMWRVFCLELRVAFRHGADIAGPLWFFLMVITLFPLSVGPQPQL LARIAPGIIQVAALLASLLALERLFRDDLQDGSLEQLMLLPVPLPAVVLAKVLAHWAV TGLPLIMLSPLVALLLGMDVYGWKIMALTLLLGTPALGFLAAPGVALTAGLRRGGVLL GILVLPLSVPVLIFAAAAMDAASMHLPADGYLAVLGALLAGSATLSPFATAAALRLSV Q" misc_feature complement(2352403..2353035) /gene="ccmB" /locus_tag="STM2253" /note="heme exporter protein CcmB; Region: ccmB; TIGR01190" /db_xref="CDD:200083" gene complement(2353044..2353681) /gene="ccmA" /locus_tag="STM2254" /db_xref="GeneID:1253776" CDS complement(2353044..2353661) /gene="ccmA" /locus_tag="STM2254" /note="cytochrome c-type biogenesis protein; similar to E. coli ATP binding protein of heme exporter A (AAC75261.1); Blastp hit to AAC75261.1 (205 aa), 79% identity in aa 1 - 200" /codon_start=1 /transl_table=11 /product="ABC superfamily (membrane) heme exporter protein" /protein_id="NP_461197.1" /db_xref="GeneID:1253776" /translation="MLEARDLYCERDERTLFRGLSFTVEAGEWVQVTGGNGAGKTTLL RLLTGLARPDGGEVYWQGEPLRRVRDSFHRSLLWIGHQPGIKTRLTARENLHFFHPGD GARLPEALAQAGLAGFEDVPVAQLSAGQQRRVALARLWLTRAALWVLDEPFTAIDVNG VARLTRRMAAHTAQGGMVILTTHQPLPGAADTVRRLALTGGGAGL" misc_feature complement(2353062..2353661) /gene="ccmA" /locus_tag="STM2254" /note="cytochrome c biogenesis heme-transporting ATPase CcmA; Region: PRK13538" /db_xref="CDD:184125" regulatory complement(2353058..2353063) /regulatory_class="ribosome_binding_site" /gene="ccmA" /locus_tag="STM2254" /note="putative RBS for ccmB; RegulonDB:STMS1H002390" regulatory complement(2353676..2353681) /regulatory_class="ribosome_binding_site" /gene="ccmA" /locus_tag="STM2254" /note="putative RBS for ccmA; RegulonDB:STMS1H002391" gene complement(2353682..2354293) /gene="napC" /locus_tag="STM2255" /db_xref="GeneID:1253777" CDS complement(2353682..2354284) /gene="napC" /locus_tag="STM2255" /note="cytochrome c-type biogenesis protein; similar to E. coli cytochrome c-type protein (AAC75262.1); Blastp hit to AAC75262.1 (200 aa), 88% identity in aa 1 - 200" /codon_start=1 /transl_table=11 /product="periplasmic nitrate reductase" /protein_id="NP_461198.1" /db_xref="GeneID:1253777" /translation="MENSNRKPGWIKRVWRWWRSPSRLALGTLLLIGFIGGIIFWGGF NTGMEKANTEEFCISCHEMRNTVYEEYMETVHYNNRSGVRATCPDCHVPHEWGPKMIR KIKASKELYAKVFGLIDTPQKFEAHRLTMAQNEWRRMKDNNSQECRNCHNFDFMDLTA QKGVAAKMHDQAVKDGQTCIDCHKGIAHKLPDMRDVKPGF" misc_feature complement(2353685..2354284) /gene="napC" /locus_tag="STM2255" /note="cytochrome c-type protein NapC; Provisional; Region: PRK10617" /db_xref="CDD:182590" regulatory complement(2354288..2354293) /regulatory_class="ribosome_binding_site" /gene="napC" /locus_tag="STM2255" /note="putative RBS for napC; RegulonDB:STMS1H002392" gene complement(2354294..2354743) /gene="napB" /locus_tag="STM2256" /db_xref="GeneID:1253778" CDS complement(2354294..2354743) /gene="napB" /locus_tag="STM2256" /note="complexes with NapA; similar to E. coli cytochrome c-type protein (AAC75263.1); Blastp hit to AAC75263.1 (156 aa), 91% identity in aa 8 - 156" /codon_start=1 /transl_table=11 /product="periplasmic small subunit nitrate reductase of cytochrome C550" /protein_id="NP_461199.1" /db_xref="GeneID:1253778" /translation="MKSHDLMKALCQWMATLALVVSGAVWAANGVDLSQSPEVSGTQE GAIRMPKEQERMPLNYVNQPPMIPHSVEGYQVTTNTNRCLQCHGVESYRTTGAPRISP THFMDSDGKVSGNVAPRRYFCLQCHVPQSDTAPIIDNTFTPSQGYGK" misc_feature complement(2354297..2354743) /gene="napB" /locus_tag="STM2256" /note="nitrate reductase cytochrome c-type subunit; Region: napB; PRK11586" /db_xref="CDD:183214" gene complement(2354859..2355741) /gene="napH" /locus_tag="STM2257" /db_xref="GeneID:1253779" CDS complement(2354859..2355728) /gene="napH" /locus_tag="STM2257" /note="electron transfer; similar to E. coli ferredoxin-type protein: electron transfer (AAC75264.1); Blastp hit to AAC75264.1 (287 aa), 88% identity in aa 1 - 280" /codon_start=1 /transl_table=11 /product="ferredoxin-type protein" /protein_id="NP_461200.1" /db_xref="GeneID:1253779" /translation="MANRKRDAGREARAKKGWWRSHRWLVLRRISQFMVLGMFLSGPW LGFWVLHGNYSSSLLFDTLPLTDPLITLESLASGHLPATVALTGAVIIAVLYALAGKR LFCSWVCPLNPVTDLANWMRRKFDLNQSATIPRHIRYVLLVVVLIGSALTGTLLWEWI NPVSLLGRSLIMGFSSGALLIIALFLFDLLVVEHGWCGHICPMGALYGVLGSKGVVTV TAKKREKCNRCMDCFHVCPEPHVLRAPVLDEQSPAQVTHRDCMTCGRCVDVCSEDVFT ITIRNIIRDASRR" misc_feature complement(2354889..2355680) /gene="napH" /locus_tag="STM2257" /note="quinol dehydrogenase membrane component; Provisional; Region: napH; PRK09477" /db_xref="CDD:236535" gene complement(2355715..2356425) /gene="napG" /locus_tag="STM2258" /db_xref="GeneID:1253780" CDS complement(2355715..2356410) /gene="napG" /locus_tag="STM2258" /note="electron transfer; similar to E. coli ferredoxin-type protein: electron transfer (AAC75265.1); Blastp hit to AAC75265.1 (231 aa), 94% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="ferredoxin-type protein" /protein_id="NP_461201.1" /db_xref="GeneID:1253780" /translation="MSRTAKPQNGRRRFLRDVVRTAGGLAAVGVALGLQQQTARASGV RLRPPGALNENVFASACVRCGQCVQACPYDTLKLATLASGLSAGTPYFVARDIPCEMC EDIPCAKVCPSGALNKDIASIDDSRMGLAVLLDQENCLNFQGLRCDVCYRECPKIDEA ITLELDRNMRTGKHARFLPTVHSDACTGCGKCEKVCVLEQPAIKVLPLSLAKGELGHH YRFGWLEGKDGKS" misc_feature complement(2355721..2356410) /gene="napG" /locus_tag="STM2258" /note="quinol dehydrogenase periplasmic component; Provisional; Region: napG; PRK09476" /db_xref="CDD:236534" regulatory complement(2355736..2355741) /regulatory_class="ribosome_binding_site" /gene="napG" /locus_tag="STM2258" /note="putative RBS for napH; RegulonDB:STMS1H002393" gene complement(2356417..2358914) /gene="napA" /locus_tag="STM2259" /db_xref="GeneID:1253781" CDS complement(2356417..2358903) /gene="napA" /locus_tag="STM2259" /EC_number="1.7.99.4" /note="complexes with NapB; similar to E. coli probable nitrate reductase 3 (AAC75266.1); Blastp hit to AAC75266.1 (828 aa), 94% identity in aa 1 - 828" /codon_start=1 /transl_table=11 /product="periplasmic large subunit nitrate reductase" /protein_id="NP_461202.1" /db_xref="GeneID:1253781" /translation="MKLSRRSFMKANAVAAAAAAAGLSVPGVARAVVGQQEAIKWDKA PCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPML RMKDGSYHKDGEFTPVSWEQAFDVMEEKFKTSLKEKGPEAIGMFGSGQWTIWEGYAAA KLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGSNMAE MHPILWSRITNRRLSDPNVKVAVLSTFQHRSFELADNGIVFTPQSDLVILNYIANYII QNNAVNQDFFTKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFDEYKAFVA EYTLDKTAEMTGVPKDQLEQLAQLYADPNKRVISYWTMGFNQHTRGVWANNLVYNLHL LTGKISQPGCGPFSLTGQPSACGTAREVGTFSHRLPADMVVTNEKHRDICEKHWQIPA GTIPAKVGLHAVAQDRALKDGKLNVYWVMCNNNMQAGPNINEDRMPGWRDPRNFIIVS DPYPTVSALSADLILPTAMWVEKEGAYGNAERRTQFWRQQIKAPGEAKSDLWQLVQFS RRFKTEEVWPEALLAQKPELRGKTLYDVLFATPAVSKFPLSELKEDQLNDESRELGFY LQKGLFEEYAWFGRGHGHDLAPFDDYHNARGLRWPVVEGKETQWRYSEGNDPYVKAGE GYKFYGKPDGKAVIFALPFEPAAESPDNEYDLWLSTGRVLEHWHTGSMTRRVPELHRA FPEAVVFIHPLDAKARDLRRGDKVKVSSRRGEVISIVETRGRNRPPQGLVYMPFFDAA QLVNNLTLDATDPLSKETDFKKCAVKLAKV" misc_feature complement(2356420..2358903) /gene="napA" /locus_tag="STM2259" /note="nitrate reductase catalytic subunit NapA; Region: PRK13532" /db_xref="CDD:237416" misc_feature complement(order(2358238..2358240,2358661..2358663, 2358745..2358747,2358757..2358762,2358766..2358768)) /gene="napA" /locus_tag="STM2259" /note="[4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:239155" misc_feature complement(order(2357230..2357232,2357311..2357313, 2357323..2357331,2357371..2357382,2357446..2357448, 2357458..2357463,2357674..2357679,2357776..2357778, 2357785..2357793,2358112..2358114,2358118..2358120, 2358169..2358177,2358247..2358252,2358259..2358270, 2358367..2358369,2358379..2358381,2358454..2358456, 2358655..2358657)) /gene="napA" /locus_tag="STM2259" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:239155" regulatory complement(2356420..2356425) /regulatory_class="ribosome_binding_site" /gene="napG" /locus_tag="STM2258" /note="putative RBS for napG; RegulonDB:STMS1H002394" gene complement(2358900..2359176) /gene="napD" /locus_tag="STM2260" /db_xref="GeneID:1253782" CDS complement(2358900..2359163) /gene="napD" /locus_tag="STM2260" /note="similar to E. coli orf, hypothetical protein (AAC75267.1); Blastp hit to AAC75267.1 (87 aa), 81% identity in aa 1 - 87" /codon_start=1 /transl_table=11 /product="periplasmic nitrate reductase" /protein_id="NP_461203.1" /db_xref="GeneID:1253782" /translation="MRTNWQVCSLVVQAKSQNIAAIGTQLNTLPGCEVALSDVESGQL IVVAEADQSETLMQTIESVRNVEGVLAVSLVYHQQDEQGEETP" misc_feature complement(2358903..2359163) /gene="napD" /locus_tag="STM2260" /note="chaperone NapD; Region: PRK10553" /db_xref="CDD:182542" regulatory complement(2358909..2358914) /regulatory_class="ribosome_binding_site" /gene="napD" /locus_tag="STM2260" /note="putative RBS for napA; RegulonDB:STMS1H002395" gene complement(2359153..2359660) /gene="napF" /locus_tag="STM2261" /db_xref="GeneID:1253783" CDS complement(2359153..2359644) /gene="napF" /locus_tag="STM2261" /note="electron transfer; similar to E. coli ferredoxin-type protein: electron transfer (AAC75268.1); Blastp hit to AAC75268.1 (164 aa), 76% identity in aa 3 - 164" /codon_start=1 /transl_table=11 /product="ferredoxin-type protein" /protein_id="NP_461204.1" /db_xref="GeneID:1253783" /translation="MVDLSRRSMLTGSWRNASNGILPPWARETTYFLAHCLRCDACIQ ACEADILQRGAGGYPSVDFKRGECSFCYACAQACTESLFLPRHTRAWDLVFTLTENCL ARQSVECHRCQDSCEPMAITFRPTLSGIYQPQLDSQACNGCGACVAICPVSAIKAENH HAH" misc_feature complement(2359156..2359644) /gene="napF" /locus_tag="STM2261" /note="ferredoxin-type protein NapF; Region: PRK10194" /db_xref="CDD:182296" regulatory complement(2359171..2359176) /regulatory_class="ribosome_binding_site" /gene="napD" /locus_tag="STM2260" /note="putative RBS for napD; RegulonDB:STMS1H002396" regulatory complement(2359655..2359660) /regulatory_class="ribosome_binding_site" /gene="napF" /locus_tag="STM2261" /note="putative RBS for napF; RegulonDB:STMS1H002397" gene 2360058..2360552 /gene="eco" /locus_tag="STM2262" /db_xref="GeneID:1253784" CDS 2360058..2360552 /gene="eco" /locus_tag="STM2262" /note="serine protease inhibitor; similar to E. coli ecotin, a serine protease inhibitor (AAC75269.1); Blastp hit to AAC75269.1 (162 aa), 79% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="ecotin" /protein_id="NP_461205.1" /db_xref="GeneID:1253784" /translation="MKMFVPAVVFAALASASAWANNGDTAQPLEKIAPYPQAEKGMKR QVITLTPQQDESTLKVELLIGQTLNVDCNQHRLGGTLETKTLEGWGYDYYVFDNVTSP VSTMMACPEGKKEQKFVTAWLGEDGMLRYNSKLPIVVYTPANVDVKYRIWKADANVQN AVAR" misc_feature 2360058..2360543 /gene="eco" /locus_tag="STM2262" /note="ecotin; Provisional; Region: PRK03719" /db_xref="CDD:179637" misc_feature order(2360319..2360333,2360445..2360462) /gene="eco" /locus_tag="STM2262" /note="secondary substrate binding site [active]" /db_xref="CDD:153074" misc_feature 2360367..2360378 /gene="eco" /locus_tag="STM2262" /note="primary substrate binding site [active]" /db_xref="CDD:153074" misc_feature 2360373..2360378 /gene="eco" /locus_tag="STM2262" /note="inhibition loop" /db_xref="CDD:153074" misc_feature 2360511..2360543 /gene="eco" /locus_tag="STM2262" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153074" gene complement(2360761..2362417) /gene="yojI" /locus_tag="STM2263" /db_xref="GeneID:1253785" CDS complement(2360761..2362404) /gene="yojI" /locus_tag="STM2263" /note="ATPase component; similar to E. coli putative ATP-binding component of a transport system (AAC75271.1); Blastp hit to AAC75271.1 (547 aa), 90% identity in aa 1 - 547" /codon_start=1 /transl_table=11 /product="putative ABC-type multidrug/protein/lipid transport system" /protein_id="NP_461206.1" /db_xref="GeneID:1253785" /translation="MELLILVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETV DTTVMVLPEFLGLLLLLMVVTLGSQLALTTLGHHFVYRLRSEFIKRILDTHVERIEQL GSASLLAGLTSDIRNITIAFVRLPELVQGIILTVGSAAYLAMLSTKMLLVTAIWMVVT IWGGFVLVARVYQHMATLRETEDKLYNDYQTVLEGRKELTLNRERAEQIFQQCYTPDA KEYRHHIIRADTFHLSAVNWSNIMMLGAIGLVFWMANSLGWADTNVAATYSLTLLFLR TPLLSAVGALPTLLTAQVAFNKLNKFALAPYKPDFPQPKAFPDWKTLELRNVVFHYQD NAFSVGPINLTIHRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGTILLDGQPIAAGQP EDYRKLFSAVFTDVWLFDRLLGPQGKPANPALVEKWLEHLKMTHKLELNDGRILNLKL SKGQKKRIALLLALAEERDIILLDEWAADQDPHFRREFYQVLLPLMQEMGKTIFAISH DDHYFIHADRLLEMRNGQLTELTGDERDAASRDAVARTA" misc_feature complement(2360764..2362404) /gene="yojI" /locus_tag="STM2263" /note="multidrug transporter membrane component/ATP-binding component; Provisional; Region: PRK10522" /db_xref="CDD:236707" regulatory complement(2362412..2362417) /regulatory_class="ribosome_binding_site" /gene="yojI" /locus_tag="STM2263" /note="putative RBS for yojI; RegulonDB:STMS1H002398" gene complement(2362480..2363222) /gene="alkB" /locus_tag="STM2264" /db_xref="GeneID:1253786" CDS complement(2362480..2363130) /gene="alkB" /locus_tag="STM2264" /note="alkylated DNA repair protein ALKB. (SW:ALKB_SALTY)" /codon_start=1 /transl_table=11 /product="DNA repair system specific for alkylated DNA" /protein_id="NP_461207.1" /db_xref="GeneID:1253786" /translation="MLDLFADEAPWQEPLAPGAVVLRRFAFRAAQSLLDDIGFVASQS PFRQMVTPGGYTMSVAMTNCGALGWTTDRHGYCYAVRDPLTDKPWPALPLSFASVCRQ AAIAAGYASFQPDACLINRYAPGAKLSLHQDKDEPDLRAPIVSVSLGVPAVFQFGGLR RSDPIQRILLEHGDIVVWGGESRLFYHGIQPLKAGFHPMTGEFRYNLTFRQAAEKE" misc_feature complement(2362495..2363130) /gene="alkB" /locus_tag="STM2264" /note="DNA oxidative demethylase AlkB; Region: PRK15401" /db_xref="CDD:237957" gene complement(2363133..2364246) /gene="ada" /locus_tag="STM2265" /db_xref="GeneID:1253787" CDS complement(2363133..2364194) /gene="ada" /locus_tag="STM2265" /EC_number="2.1.1.63" /note="bifunctional; ADA regulatory protein (regulatory protein of adaptative response). (SW:ADA_SALTY); O6-methylguanine-DNA methyltransferase" /codon_start=1 /transl_table=11 /product="AraC/Xyl family transcription activator/repressor" /protein_id="NP_461208.1" /db_xref="GeneID:1253787" /translation="MMKKALLIDDECWLRVQARDASADGRFVFAVRTTGVFCRPSCRS KRALRKNVRFFANAQQALDAGFRPCKRCQPDNARAQQRRLDKIACACRLLEQETPVTL AFLAQAVAMSPFHLHRLFKASTGMTPKGWQQAWRARRLREALAKGEPITAAIYRAGFP DSSSYYRHADQTLGMTAKQFRKGGDNVSVRYALTDWVYGRCLVAESERGICAILPGDS DDALLAELHTLFPSARHEPADALFQQRVRQVVAAINTRDVLLSLPLDIQGTAFQQQVW QALCAIPCGETVSYQQLAATIGKPTAVRAVASACGANKLAMVIPCHRVVRRDGALSGY RWGVRRKAQLLKREAQKEE" misc_feature complement(2363136..2364194) /gene="ada" /locus_tag="STM2265" /note="bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada; Region: PRK15435" /db_xref="CDD:185333" regulatory complement(2363136..2363141) /regulatory_class="ribosome_binding_site" /gene="alkB" /locus_tag="STM2264" /note="putative RBS for alkB; RegulonDB:STMS1H002399" regulatory complement(2363197..2363205) /regulatory_class="minus_10_signal" /gene="alkB" /locus_tag="STM2264" /note="putative -10_signal for alkB; RegulonDB:STMLTH004529" regulatory complement(2363214..2363222) /regulatory_class="minus_35_signal" /gene="alkB" /locus_tag="STM2264" /note="putative -35_signal for alkB; RegulonDB:STMLTH004529" regulatory complement(2364198..2364203) /regulatory_class="ribosome_binding_site" /gene="ada" /locus_tag="STM2265" /note="putative RBS for ada; RegulonDB:STMS1H002400" regulatory complement(2364219..2364227) /regulatory_class="minus_10_signal" /gene="ada" /locus_tag="STM2265" /note="putative -10_signal for ada; RegulonDB:STMLTH004530" regulatory complement(2364238..2364246) /regulatory_class="minus_35_signal" /gene="ada" /locus_tag="STM2265" /note="putative -35_signal for ada; RegulonDB:STMLTH004530" gene complement(2364275..2365341) /gene="apbE" /locus_tag="STM2266" /db_xref="GeneID:1253788" CDS complement(2364275..2365327) /gene="apbE" /locus_tag="STM2266" /note="thiamine biosynthesis lipoprotein APBE precursor. (SW:APBE_SALTY)" /codon_start=1 /transl_table=11 /product="putative thiamine biosynthesis lipoprotein" /protein_id="NP_461209.1" /db_xref="GeneID:1253788" /translation="MKMTFCRAVCLAAAFLLMGCDEAPETTTASPAAQVLEGKTMGTL WRVSVVGIDAKRAAELQTKIQTQLDADDWLLSTYKNDSALMRFNHSRSLAPWPVSEAM ADIVTSALRIGAKTDGAMDITVGPLVNLWGFGPDRQPLHIPTPAQIDAAKAKTGLQHL QVIDRAGHQFLQKDLPDLYVDLSTVGEGYAADHLARLMEQEGIARYLVSVGGALSSRG MNAQGQPWRVAIQKPTDRENAVQAIVDINGHGISTSGSYRNYYELDGKRVSHVIDPQT GRPIEHNLVSVTVIAPTALEADGWDTGLMVLGTQKAQEVVRREGLAVFMIMKEGEGFK TWMSPQFKTFLVSDKN" misc_feature complement(2364281..2365327) /gene="apbE" /locus_tag="STM2266" /note="thiamine biosynthesis lipoprotein ApbE; Provisional; Region: PRK10461" /db_xref="CDD:182478" protein_bind complement(2364407..2364427) /gene="apbE" /locus_tag="STM2266" /note="putative binding site for Ada, RegulonDB: STMS1H000002" /bound_moiety="Ada" regulatory complement(2365336..2365341) /regulatory_class="ribosome_binding_site" /gene="apbE" /locus_tag="STM2266" /note="putative RBS for apbE; RegulonDB:STMS1H002401" gene complement(2365442..2366750) /gene="ompC" /locus_tag="STM2267" /db_xref="GeneID:1253789" CDS complement(2365442..2366578) /gene="ompC" /locus_tag="STM2267" /note="porin; outer membrane protein C precursor (porin OMPC). (SW:OMPC_SALTY)" /codon_start=1 /transl_table=11 /product="outer membrane protein 1b (ib;c)" /protein_id="NP_461210.1" /db_xref="GeneID:1253789" /translation="MKVKVLSLLVPALLVAGAANAAEIYNKDGNKLDLFGKVDGLHYF SDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLK FADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGL VDGLDFALQYQGKNGSVSGENTNGRSLLNQNGDGYGGSLTYAIGEGFSVGGAITTSKR TADQNNTANARLYGNGDRATVYTGGLKYDANNIYLAAQYSQTYNATRFGTSNGSNPST SYGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGA TYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF" misc_feature complement(2365445..2366539) /gene="ompC" /locus_tag="STM2267" /note="outer membrane porin protein C; Provisional; Region: PRK10554" /db_xref="CDD:182543" regulatory complement(2366586..2366591) /regulatory_class="ribosome_binding_site" /gene="ompC" /locus_tag="STM2267" /note="putative RBS for ompC; RegulonDB:STMS1H002402" protein_bind complement(2366691..2366705) /gene="ompC" /locus_tag="STM2267" /note="putative binding site for Lrp, RegulonDB: STMS1H000255" /bound_moiety="Lrp" protein_bind complement(2366713..2366725) /gene="ompC" /locus_tag="STM2267" /note="putative binding site for OmpR, RegulonDB: STMS1H000327" /bound_moiety="OmpR" regulatory complement(2366726..2366734) /regulatory_class="minus_10_signal" /gene="ompC" /locus_tag="STM2267" /note="putative -10_signal for ompC; RegulonDB:STMLTH004531" regulatory complement(2366742..2366750) /regulatory_class="minus_35_signal" /gene="ompC" /locus_tag="STM2267" /note="putative -35_signal for ompC; RegulonDB:STMLTH004531" protein_bind complement(2366747..2366757) /note="putative binding site for OmpR, RegulonDB: STMS1H000332" /bound_moiety="OmpR" protein_bind complement(2366807..2366819) /note="putative binding site for OmpR, RegulonDB: STMS1H000333" /bound_moiety="OmpR" protein_bind complement(2366825..2366839) /note="putative binding site for IHF, RegulonDB: STMS1H000222" /bound_moiety="IHF" gene complement(2366829..2367009) /gene="micF" /locus_tag="STM2268" /db_xref="GeneID:1253790" ncRNA complement(2366829..2367004) /ncRNA_class="other" /gene="micF" /locus_tag="STM2268" /product="regulatory RNA" /db_xref="GeneID:1253790" regulatory complement(2367004..2367009) /regulatory_class="ribosome_binding_site" /gene="micF" /locus_tag="STM2268" /note="putative RBS for micF; RegulonDB:STMS1H002403" gene 2367291..2369976 /gene="yojN" /locus_tag="STM2269" /db_xref="GeneID:1253791" regulatory 2367291..2367296 /regulatory_class="ribosome_binding_site" /gene="yojN" /locus_tag="STM2269" /note="putative RBS for yojN; RegulonDB:STMS1H002404" CDS 2367307..2369976 /gene="yojN" /locus_tag="STM2269" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC75276.1); Blastp hit to AAC75276.1 (890 aa), 85% identity in aa 1 - 890" /codon_start=1 /transl_table=11 /product="putative sensor/kinase in regulatory system" /protein_id="NP_461211.1" /db_xref="GeneID:1253791" /translation="MSQSDTTVSTRFSLLPGSITRFFLLLIIVLLVTMGVMVQSAVNA WLKDKSYQIVDITHAIHKRVDTWRYVTWQIYDNIAATTTPSTGEGLQETRLKQDVYYL EKPRRKTEALIFGSHDSATLEMTQRMSTYLDTLWGAENVPWSMYYLNGQDNSLILIST LPLKDLSSGFKESTIGNIVDSRRAEMLQQANALDERESFSSLRKLAWQNGHYFTLRTT FNQPGHLATVVAFDLPINDLIPPGMPLDSFRIEPDATQATGRSSEKEAPDSVTISFNG SKIEISSALNSTGMRLIWQVPFGTLLLDTLQNILLPLLLNIGLLALALFGYATFRHQP GRSTESTSGNAANNELRVLRAINEEIVSLLPLGLLVYDQEGNRTVISNKIADHLLPHL NLQNITSMAEQHQGVIQATINNELYEIRLFRSQIAPRTQIFIIRDQDREVLVNKKLKQ AQRLYEKNQQGRAAFMQNISNTLKEPVRQLAVNAAAVTTPESLKLADQADVLVRMIDE IQLANMLENDAWKSEATLFSLQDLIDEVVPEVLPAIKRKGLQLLINNHLSGNDERWGD RDALRRILLLLIQYAVTTTAMGKITLEVEQDESIAERLTFRILDTGEGVTLNEIDNLH FPYMNETQGDRYGKANPLTFWLCNQLARKLGGHLNIKARETLGTRYTVHVKMLPHDQH TQVEERLLDDVSVMVDVTSNEVRAIVLRQLENWGATCITPDERQISQEYDLFLTDNPS NLTASGLLLSDDESGVRKIGPGQLRVNFNMSNAMQEAVLQLIEEQLAQEEIPASPLGG DENAELHASGYYALFVDTVPDDVKRLYTEAATSDFAALAQTAHRLKGVFAMLNLVPGK QLCETLEHLIREKDAPGIEKYISDIDAYVKSLL" misc_feature 2367334..2369973 /gene="yojN" /locus_tag="STM2269" /note="phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional; Region: PRK10618" /db_xref="CDD:236726" gene 2369978..2370643 /gene="rcsB" /locus_tag="STM2270" /db_xref="GeneID:1253792" regulatory 2369978..2369983 /regulatory_class="ribosome_binding_site" /gene="rcsB" /locus_tag="STM2270" /note="putative RBS for rcsB; RegulonDB:STMS1H002405" CDS 2369993..2370643 /gene="rcsB" /locus_tag="STM2270" /note="positive regulator; similar to E. coli positive response regulator for colanic capsule biosynthesis, (sensor, RcsC) (AAC75277.1); Blastp hit to AAC75277.1 (216 aa), 99% identity in aa 1 - 216" /codon_start=1 /transl_table=11 /product="LuxR/UhpA family response regulator in two-component regulatory system with RcsC" /protein_id="NP_461212.1" /db_xref="GeneID:1253792" /translation="MNNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINN LPKLDAHVLITDLSMPGDKYGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLD IEGIVLKQGAPTDLPKALAALQKGKKFTPESVSRLLEKISAGGYGDKRLSPKESEVLR LFAEGFLVTEIAKKLNRSIKTISSQKKSAMMKLGVENDIALLNYLSSVTLSPTDKE" misc_feature 2369993..2370640 /gene="rcsB" /locus_tag="STM2270" /note="transcriptional regulator RcsB; Provisional; Region: PRK10840" /db_xref="CDD:182771" gene complement(2370746..2373608) /gene="rcsC" /locus_tag="STM2271" /db_xref="GeneID:1253793" CDS complement(2370746..2373592) /gene="rcsC" /locus_tag="STM2271" /EC_number="2.7.3.-" /note="regulates colanic capsule biosynthesis; similar to E. coli sensor for ctr capsule biosynthesis, probable histidine kinase acting on RcsB (AAC75278.1); Blastp hit to AAC75278.1 (933 aa), 89% identity in aa 1 - 931" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with RcsB" /protein_id="NP_461213.1" /db_xref="GeneID:1253793" /translation="MKYLASFRTTLKVSRYLFRALALLIWLLIAFVSVFYIVNALHQR ESEIRQEFNLSSDQAQRFIQRTSDVMKELKYIAENRLTAENGVMSSRARDDKMVVPDF EPLFADSDCAAMGSAWRGSLESLAWFMRYWRDNFSAAYDLNRVFLIGSDNLCMANFGL REMPVERDDALKALHERIMKYRNAPQEESGNNLFWISQGARQGVGYFYALTPVYLANR LQALLGVEQSIRMENFFTPGSLPMGVTIIDENGHSLISLTGPDGIIKAEPRWMQERSW FGYTPGFRELVLKKSLPPSSLSIVYSVPVDLVLERIRILILNAILLNVLVGAGLFTLA RMYERRIFIPAESDAQRLEEHEQFNRKIVASAPVGICILRTIDGVNILSNELAHTYLN MLTHEDRQRLTQIICGQQVNFVDVLTSNNTNLQISFVHSRYRNENVAICVLVDVSTRV KMEESLQEMAQAAEQASQSKSMFLATVSHELRTPLYGIIGNLDLLQTKELPKGVERLV TAMNNSSSLLLKIISDILDFSKIESEQLKIEPREFSPREVMNHITANYLPLVVRKQLG LYCFIEPDVPVSLNGDPMRLQQVISNLLSNAIKFTDIGCIVLHVRCDGDYLSIRVRDT GVGIPAKEVVRLFDPFFQVGTGVQRNFQGTGLGLAICEKLISMMDGDISVDSEPGMGS QFTLRIPLYGAQYPVKKSVEGLAGTCCWLAVRNTSLCQFIETSLARSGVHTQRYEGQE PAADDILIVDDALEHTWQGRAAVVFCRRHIGIPLERAPGEWVHSVASVHELPALLARI YSIELDSEALSSALPTTDKTADSNDDMMILVVDDHPINRRLLADQLGSLGYQCKTAND GVDALNVLSKNAIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVVGVTANALAEEKQRC LESGMDSCLSKPVTLDVLKQTLAVYAERVRKTRA" misc_feature complement(2370752..2373502) /gene="rcsC" /locus_tag="STM2271" /note="two-component system sensor histidine kinase RcsC; Region: PRK10841" /db_xref="CDD:182772" regulatory complement(2373603..2373608) /regulatory_class="ribosome_binding_site" /gene="rcsC" /locus_tag="STM2271" /note="putative RBS for rcsC; RegulonDB:STMS1H002406" gene complement(2373710..2376422) /gene="gyrA" /locus_tag="STM2272" /db_xref="GeneID:1253794" CDS complement(2373710..2376346) /gene="gyrA" /locus_tag="STM2272" /EC_number="5.6.2.2" /note="type II topoisomerase; similar to E. coli DNA gyrase, subunit A, type II topoisomerase (AAC75291.1); Blastp hit to AAC75291.1 (875 aa), 91% identity in aa 1 - 875" /codon_start=1 /transl_table=11 /product="DNA gyrase, subunit A" /protein_id="NP_461214.1" /db_xref="GeneID:1253794" /translation="MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPV HRRVLYAMNVLGNDWNKAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYML VDGQGNFGSIDGDSAAAMRYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMP TKIPNLLVNGSSGIAVGMATNIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFP TAAIINGRRGIEEAYRTGRGKVYIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEK IAELVKDKRVEGISALRDESDKDGMRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINM VALHHGQPKIMNLKDIISAFVRHRREVVTRRTIFELRKARDRAHILEALAIALANIDP IIELIRRAPTPAEAKAALISRPWDLGNVAAMLERAGDDAARPEWLEPEFGVRDGQYYL TEQQAQAILDLRLQKLTGLEHEKLLDEYKELLEQIAELLHILGSADRLMEVIREEMEL IRDQFGDERRTEITANSADINIEDLISQEDVVVTLSHQGYVKYQPLTDYEAQRRGGKG KSAARIKEEDFIDRLLVANTHDTILCFSSRGRLYWMKVYQLPEASRGARGRPIVNLLP LEANERITAILPVREYEEGVNVFMATASGTVKKTALTEFSRPRSAGIIAVNLNDGDEL IGVDLTSGSDEVMLFSAAGKVVRFKEDAVRAMGRTATGVRGIKLAGDDKVVSLIIPRG EGAILTVTQNGYGKRTAADEYPTKSRATQGVISIKVTERNGSVVGAVQVDDCDQIMMI TDAGTLVRTRVSEISVVGRNTQGVILIRTAEDENVVGLQRVAEPVDDEELDAIDGSVA EGDEDIAPEAESDDDVADDADE" misc_feature complement(2373821..2376328) /gene="gyrA" /locus_tag="STM2272" /note="DNA gyrase subunit A; Validated; Region: PRK05560" /db_xref="CDD:235502" misc_feature complement(2374592..2374735) /gene="gyrA" /locus_tag="STM2272" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(2374433..2374585) /gene="gyrA" /locus_tag="STM2272" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(2374283..2374417) /gene="gyrA" /locus_tag="STM2272" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(2374130..2374273) /gene="gyrA" /locus_tag="STM2272" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(2373977..2374123) /gene="gyrA" /locus_tag="STM2272" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" regulatory complement(2376357..2376362) /regulatory_class="ribosome_binding_site" /gene="gyrA" /locus_tag="STM2272" /note="putative RBS for gyrA; RegulonDB:STMS1H002407" protein_bind complement(2376389..2376395) /gene="gyrA" /locus_tag="STM2272" /note="putative binding site for CspA, RegulonDB: STMS1H000124" /bound_moiety="CspA" regulatory complement(2376398..2376406) /regulatory_class="minus_10_signal" /gene="gyrA" /locus_tag="STM2272" /note="putative -10_signal for gyrA; RegulonDB:STMLTH004532" regulatory complement(2376414..2376422) /regulatory_class="minus_35_signal" /gene="gyrA" /locus_tag="STM2272" /note="putative -35_signal for gyrA; RegulonDB:STMLTH004532" protein_bind complement(2376463..2376469) /note="putative binding site for CspA, RegulonDB: STMS1H000126" /bound_moiety="CspA" protein_bind complement(2376529..2376535) /note="putative binding site for CspA, RegulonDB: STMS1H000125" /bound_moiety="CspA" gene complement(2376756..2377964) /locus_tag="STM2273" /db_xref="GeneID:1253795" CDS complement(2376756..2377958) /locus_tag="STM2273" /note="similar to E. coli starvation sensing protein (AAC74653.1); Blastp hit to AAC74653.1 (404 aa), 30% identity in aa 198 - 384, 36% identity in aa 1 - 120" /codon_start=1 /transl_table=11 /product="putative dehydratase protein" /protein_id="NP_461215.1" /db_xref="GeneID:1253795" /translation="MKITSIEVFDCELKKRDQTMSSYNPVLIRVNTDSGLSGIGEVGL AYGAGAKAGVGIIRDLAPLIVGEDPLNIEKIWEFFFRKTFWGMGGGNVFYAGMSAIDI ALWDIKGKYLGVPVYQLLGGKTNEKLRTYASQLQFGWGDKRHILVTPEEYAEAARAAL DDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDAD IIVEIHSLLGTNSAIQFAKAIEKYRIFLYEEPIHPLNSDNMQKVSRSTTIPIATGERS YTRWGYRELLEKQSIAVAQPDLCLCGGITEGKKICDYANIYDTTVQVHVCGGPVSTVA ALHMETAIPNFIIHEHHTNAMKASIRELCTHDYQPENGYYVAPEQPGLGQELNDEVVK EYLAYVIK" misc_feature complement(2376804..2377955) /locus_tag="STM2273" /note="Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues; Region: MR_like; cd03316" /db_xref="CDD:239432" misc_feature complement(order(2376912..2376914,2376987..2376989, 2377068..2377070,2377137..2377139,2377215..2377217, 2377293..2377295,2377449..2377451,2377455..2377457)) /locus_tag="STM2273" /note="active site pocket [active]" /db_xref="CDD:239432" regulatory complement(2377959..2377964) /regulatory_class="ribosome_binding_site" /locus_tag="STM2273" /note="putative RBS for STM2273; RegulonDB:STMS1H002408" gene complement(2377973..2379304) /locus_tag="STM2274" /db_xref="GeneID:1253796" CDS complement(2377973..2379298) /locus_tag="STM2274" /note="similar to E. coli putative transport protein (AAC75306.1); Blastp hit to AAC75306.1 (442 aa), 30% identity in aa 18 - 428" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_461216.1" /db_xref="GeneID:1253796" /translation="MSSPQENLYDAIRIVKRKIIPLAFILYFFNYMDRVNIGFAALRM NESLGITPEDFANISSIFFISYLIFQIPSSIGLQKLGARKWISSIIIGWGAVTGLIFF AKDTQHILLARIFLGVFEAGFFPGMVYYLACWFPARERGKVNSFFMLSIAVASVLAAP MSGWIIEHLNTPDYEGWRWLFAIEGIPTVFLGILTFYLLPDSPEKAKWLTPQQISALV NKLRTDNETAAALNKNTNSSFLSVIKNPVLLQLSFAYMLIQAAALAANYWLPGLVKGF SADFTDTDVGLIMSIPFIFAMFSMPWWGWHSDKKNERKWHAALPMFLAGCGFLMIALV PSMSLRMLGLTFYGVGILSYYGPYWALPSALLSPSGLAISIAFINSCSSLGGFLINKS LGFVSTHYGATGIFIVEAILCFAAVAVLALMKIDVKKEKSQQTNVVSRT" misc_feature complement(2378033..2379244) /locus_tag="STM2274" /note="Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily; Region: MFS_ExuT_GudP_like; cd17319" /db_xref="CDD:340877" misc_feature complement(order(2378141..2378143,2378150..2378155, 2378162..2378167,2378174..2378176,2378222..2378224, 2378234..2378236,2378246..2378251,2378399..2378401, 2378411..2378413,2378498..2378500,2378507..2378515, 2378522..2378527,2378534..2378536,2378834..2378836, 2378843..2378848,2378855..2378857,2378915..2378917, 2378924..2378932,2378936..2378941,2379089..2379091, 2379185..2379187,2379194..2379199,2379206..2379211)) /locus_tag="STM2274" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340877" regulatory complement(2379299..2379304) /regulatory_class="ribosome_binding_site" /locus_tag="STM2274" /note="putative RBS for STM2274; RegulonDB:STMS1H002409" gene 2379342..2380232 /locus_tag="STM2275" /db_xref="GeneID:1253797" regulatory 2379342..2379347 /regulatory_class="ribosome_binding_site" /locus_tag="STM2275" /note="putative RBS for STM2275; RegulonDB:STMS1H002410" CDS 2379348..2380232 /locus_tag="STM2275" /note="similar to E. coli orf, hypothetical protein (AAC74613.1); Blastp hit to AAC74613.1 (228 aa), 25% identity in aa 13 - 217" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_461217.3" /db_xref="GeneID:1253797" /translation="MLRKKQYNSKANVSYLIYQQANLMKYTITTIKYVNFLISDILDP LILNKLITMEPGLTMEEKKMKNRLKRDFSHISIEIPKSITQVIKEKIREMIIHGDFDL GQAISENELSNILMVSKTPIREAFIWLSYNENLVNIIPRSGTFVFSVTDEDINDLIKM RVILEQGAIREAMEKNANNVIVELSNILSKSAKINAERDTQAYLKLDHDFHYVFVKYA DNKYISQAHLLISARLLAIRYRLDFTAEYITSSNRGHATILDMLKNNNVEGVCNFITH HIGSGFTERARKLLALKA" misc_feature 2379564..2380220 /locus_tag="STM2275" /note="DNA-binding transcriptional regulator, GntR family [Transcription]; Region: GntR; COG1802" /db_xref="CDD:441407" gene 2380219..2381043 /gene="ubiG" /locus_tag="STM2276" /db_xref="GeneID:1253798" regulatory 2380219..2380227 /regulatory_class="minus_35_signal" /gene="ubiG" /locus_tag="STM2276" /note="putative -35_signal for ubiG; RegulonDB:STMLTH004533" regulatory 2380247..2380255 /regulatory_class="minus_10_signal" /gene="ubiG" /locus_tag="STM2276" /note="putative -10_signal for ubiG; RegulonDB:STMLTH004533" regulatory 2380297..2380302 /regulatory_class="ribosome_binding_site" /gene="ubiG" /locus_tag="STM2276" /note="putative RBS for ubiG; RegulonDB:STMS1H002411" CDS 2380315..2381043 /gene="ubiG" /locus_tag="STM2276" /EC_number="2.1.1.64" /note="3-demethylubiquinone-9 3-methyltransferase. (SW:UBIG_SALTY)" /codon_start=1 /transl_table=11 /product="2-octaprenyl-6-hydroxy phenol methylase" /protein_id="NP_461218.1" /db_xref="GeneID:1253798" /translation="MNTEKPSVAHNVDHNEIAKFEAVASRWWDLEGEFKPLHRINPLR LGYITERSGGLFGKKVLDVGCGGGILAESMAREGATVTGLDMGFEPLQVAKLHALESG IEVEYVQETVEEHAAKHAQQYDVVTCMEMLEHVPDPQSVVHACAQLVKPGGEVFFSTL NRNGKSWLMAVVGAEYILRMVPKGTHDVKKFIKPAELLSWVDETVLKEQHITGLHYNP ITNTFKLGPGVDVNYMLHTRAKKA" misc_feature 2380360..2381016 /gene="ubiG" /locus_tag="STM2276" /note="ubiquinone biosynthesis O-methyltransferase; Region: UbiG; TIGR01983" /db_xref="CDD:273910" misc_feature order(2380501..2380521,2380567..2380572,2380642..2380650, 2380699..2380701) /gene="ubiG" /locus_tag="STM2276" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" protein_bind 2381121..2381137 /note="putative binding site for FIS, RegulonDB: STMS1H000143" /bound_moiety="FIS" protein_bind 2381239..2381249 /note="putative binding site for DnaA, RegulonDB: STMS1H000136" /bound_moiety="DnaA" protein_bind 2381263..2381273 /note="putative binding site for DnaA, RegulonDB: STMS1H000135" /bound_moiety="DnaA" gene 2381277..2383684 /gene="nrdA" /locus_tag="STM2277" /db_xref="GeneID:1253799" regulatory 2381277..2381285 /regulatory_class="minus_35_signal" /gene="nrdA" /locus_tag="STM2277" /note="putative -35_signal for nrdA; RegulonDB:STMLTH004534" regulatory 2381301..2381309 /regulatory_class="minus_10_signal" /gene="nrdA" /locus_tag="STM2277" /note="putative -10_signal for nrdA; RegulonDB:STMLTH004534" regulatory 2381384..2381389 /regulatory_class="ribosome_binding_site" /gene="nrdA" /locus_tag="STM2277" /note="putative RBS for nrdA; RegulonDB:STMS1H002412" CDS 2381399..2383684 /gene="nrdA" /locus_tag="STM2277" /EC_number="1.17.4.1" /note="ribonucleoside-diphosphate reductase 1 alpha chain. (SW:RIR1_SALTY)" /codon_start=1 /transl_table=11 /product="ribonucleoside diphosphate reductase 1, alpha subunit" /protein_id="NP_461219.1" /db_xref="GeneID:1253799" /translation="MNQSLLVTKRDGRTERINLDKIHRVLDWAAEGLNNVSVSQVELR SHIQFYDGIKTSDIHETIIKAAADLISRDAPDYQYLAARLAIFHLRKKAFGQFEPPAL YHHVVKMVELGKYDNHLLEDYTEEEFKQMDSFIVHDRDMTFSYAAVKQLEGKYLVQNR VTGEIYESAQFLYILVAACLFSNYPRETRLDYVKRFYDAVSTFKISLPTPIMSGVRTP TRQFSSCVLIECGDSLDSINATSSAIVKYVSQRAGIGINAGRIRALGSPIRGGEAFHT GCIPFYKHFQTAVKSCSQGGVRGGAATLFYPMWHLEVESLLVLKNNRGVEGNRVRHMD YGVQINKLMYTRLLKGGDITLFSPSDVPGLYDAFFADQDEFERLYVKYEHDDSIRKQR VKAVELFSLMMQERASTGRIYIQNVDHCNTHSPFDPVVAPVRQSNLCLEIALPTKPLN DVNDENGEIALCTLSAFNLGAIKTLDELEELAILAVRALDALLDYQDYPIPAAKRGAM GRRTLGIGVINFAYWLAKNGKRYSDGSANNLTHKTFEAIQYYLLKASNELAKEQGACP WFNETTYAKGILPIDTYKKDLDAIVNEPLHYDWEQLRESIKTHGLRNSTLSALMPSET SSQISNATNGIEPPRGYVSIKASKDGILRQVVPDYEHLKDAYELLWEMPNNDGYLQLV GIMQKFIDQSISANTNYDPSRFPSGKVPMQQLLKDLLTAYKFGVKTLYYQNTRDGAED AQDDLAPSIQDDGCESGACKI" misc_feature 2381408..2383681 /gene="nrdA" /locus_tag="STM2277" /note="ribonucleoside-diphosphate reductase subunit alpha; Region: PRK09103" /db_xref="CDD:181649" gene 2383783..2384927 /gene="nrdB" /locus_tag="STM2278" /db_xref="GeneID:1253800" regulatory 2383783..2383788 /regulatory_class="ribosome_binding_site" /gene="nrdB" /locus_tag="STM2278" /note="putative RBS for nrdB; RegulonDB:STMS1H002413" CDS 2383797..2384927 /gene="nrdB" /locus_tag="STM2278" /EC_number="1.17.4.1" /note="ribonucleoside-diphosphate reductase 1 beta chain. (SW:RIR2_SALTY)" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase 1, beta subunit" /protein_id="NP_461220.1" /db_xref="GeneID:1253800" /translation="MAYTTFSQTKNDQLKEPMFFGQPVNVARYDQQKYDIFEKLIEKQ LSFFWRPEEVDVSRDRIDYQALPEHEKHIFISNLKYQTLLDSIQGRSPNVALLPLISI PELETWVETWAFSETIHSRSYTHIIRNIVNDPAVVFDDIVTNEQIQKRAEGISAYYDE LIEMTSYWHLLGEGTHTVNGKTVVVNLRELKKKLYLCLMSVNALEAIRFYVSFACSFA FAERELMEGNAKIIRLIARDEALHLTGTQHMLNLLRSGVDDPEMAEIAEECKQECYDL FVQAAQQEKEWADYLFRDGSMIGLNKDILCQYVEYITNIRMQAVGLDLPFQTRSNPIP WINTWLVSDNVQVAPQEVEVSSYLVGQIDSEVDTDDLSNFQL" misc_feature 2383797..2384924 /gene="nrdB" /locus_tag="STM2278" /note="ribonucleotide-diphosphate reductase subunit beta; Reviewed; Region: nrdB; PRK09101" /db_xref="CDD:181647" misc_feature order(2383908..2383910,2383929..2383931,2384124..2384129, 2384136..2384138,2384145..2384150,2384157..2384159, 2384166..2384168,2384208..2384213,2384220..2384222) /gene="nrdB" /locus_tag="STM2278" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153108" misc_feature order(2383941..2383943,2384049..2384051,2384142..2384144, 2384151..2384153,2384163..2384165,2384505..2384510, 2384520..2384522) /gene="nrdB" /locus_tag="STM2278" /note="putative radical transfer pathway [active]" /db_xref="CDD:153108" misc_feature order(2384049..2384051,2384142..2384144,2384151..2384153, 2384409..2384411,2384511..2384513,2384520..2384522) /gene="nrdB" /locus_tag="STM2278" /note="diiron center [ion binding]; other site" /db_xref="CDD:153108" misc_feature 2384163..2384165 /gene="nrdB" /locus_tag="STM2278" /note="tyrosyl radical; other site" /db_xref="CDD:153108" gene 2384927..2385181 /gene="yfaE" /locus_tag="STM2279" /db_xref="GeneID:1253801" CDS 2384927..2385181 /gene="yfaE" /locus_tag="STM2279" /note="similar to E. coli orf, hypothetical protein (AAC75296.1); Blastp hit to AAC75296.1 (84 aa), 96% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="putative ferredoxin" /protein_id="NP_461221.1" /db_xref="GeneID:1253801" /translation="MGRVTLRITGTQLLCQDEHPSLLAALESHNVEVEYQCREGYCGS CRTRLVAGQVDWITEPLAFIQPGEILPCCCRAKGDIEIEM" misc_feature 2384927..2385178 /gene="yfaE" /locus_tag="STM2279" /note="2Fe-2S ferredoxin-like protein; Region: PRK10713" /db_xref="CDD:182668" misc_feature order(2385023..2385028,2385035..2385037,2385044..2385046, 2385050..2385061,2385137..2385142) /gene="yfaE" /locus_tag="STM2279" /note="catalytic loop [active]" /db_xref="CDD:238126" misc_feature order(2385035..2385037,2385050..2385052,2385059..2385061, 2385140..2385142) /gene="yfaE" /locus_tag="STM2279" /note="iron binding site [ion binding]; other site" /db_xref="CDD:238126" gene complement(2385183..2386377) /locus_tag="STM2280" /db_xref="GeneID:1253802" CDS complement(2385183..2386373) /locus_tag="STM2280" /note="similar to E. coli putative transport (AAC76498.1); Blastp hit to AAC76498.1 (419 aa), 26% identity in aa 31 - 407" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_461222.1" /db_xref="GeneID:1253802" /translation="MKEKLWTKDFWAITIVSFIIFFVFYVLLTLLPIYIADRLHASAD KAGLLVTCFLAAAIVIRPFAGQWVGKYSNKKILVLSSLAFLVITALYPVCHSIESLLF IRVLHGITFGVITTVKGTISARLIPASRRGEGISFFSLAMGLAMVVGPWIGLNMARWD AFTAAFWLCSAVAALGIVLSLIVTVPPVIRHADGSKPNLGFSAMFDRAALPFALVTFF MTFSYAGVSAFLALYARELDLMAAASNFLLCYAILLMICRTFTGNICDKKGPKYVVYP CLLAFTIGLVALGYTNGSIMMIISGGLIGIGYGSVTPVFQTQIISSVEPHKIGVANSL FFNAMDAGMAIGAFIMGMMVESVGYRMIYVAGAVLVVLAGALYAVQMKKRGVMPLVST SELH" misc_feature complement(2385243..2386337) /locus_tag="STM2280" /note="Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily; Region: MFS_YfcJ_like; cd17489" /db_xref="CDD:341042" misc_feature complement(order(2385345..2385347,2385354..2385359, 2385366..2385371,2385378..2385380,2385426..2385428, 2385438..2385440,2385450..2385455,2385600..2385602, 2385612..2385614,2385690..2385692,2385699..2385707, 2385714..2385719,2385726..2385728,2385936..2385938, 2385945..2385950,2385957..2385959,2386017..2386019, 2386026..2386034,2386038..2386043,2386191..2386193, 2386290..2386292,2386299..2386304,2386311..2386316)) /locus_tag="STM2280" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:341042" regulatory complement(2386372..2386377) /regulatory_class="ribosome_binding_site" /locus_tag="STM2280" /note="putative RBS for STM2280; RegulonDB:STMS1H002414" gene 2386530..2387413 /locus_tag="STM2281" /db_xref="GeneID:1253803" regulatory 2386530..2386535 /regulatory_class="ribosome_binding_site" /locus_tag="STM2281" /note="putative RBS for STM2281; RegulonDB:STMS1H002415" CDS 2386535..2387413 /locus_tag="STM2281" /note="similar to E. coli orf, hypothetical protein (AAC75298.1); Blastp hit to AAC75298.1 (68 aa), 80% identity in aa 1 - 66" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461223.1" /db_xref="GeneID:1253803" /translation="MTLTQIHALLAVLEYGGFTEASKRLYMTQSAVSQAISALEEELG VDILIRERRKEIELTAAGSRIVRHLRAIQRDVNAVKEIAEQEKKNPARTLRIGCFPSA CACILPGVIRYFESHHPNVKIIPYEENSTAIIDSLQDGSIDAGFVPFPVNGMYCVPIY RDKFTVVVPENHPLAANSTVTVEELMDEPLIVSKGRYELSIMALFKEKGIEPIFKYEF NHPDTALNFIRQGLGIALLPELTLKATTGKLCSVALEPTFYRQISLLAKEPPVEGSPL FLLQKCMETLTDEGLL" misc_feature 2386535..2387329 /locus_tag="STM2281" /note="DNA-binding transcriptional regulator, LysR family [Transcription]; Region: LysR; COG0583" /db_xref="CDD:440348" gene complement(2387529..2388614) /gene="glpQ" /locus_tag="STM2282" /db_xref="GeneID:1253804" CDS complement(2387529..2388599) /gene="glpQ" /locus_tag="STM2282" /EC_number="3.1.4.46" /note="similar to E. coli glycerophosphodiester phosphodiesterase, periplasmic (AAC75299.1); Blastp hit to AAC75299.1 (358 aa), 89% identity in aa 1 - 357" /codon_start=1 /transl_table=11 /product="periplasmic glycerophosphodiester phosphodiesterase" /protein_id="NP_461224.1" /db_xref="GeneID:1253804" /translation="MKTTLKNLSVALMLAGMTIGSGAVAAEKVVIAHRGASGYLPEHT LPAKAMAYAQGADYLEQDLVMTKDDHLVVLHDHYLDRVTDVADRFPDRARKDGRYYAI DFTLDEIKSLKFTEGFDIENGKKVQTYPGRFPMGKSDFRIHTFEEEIEFVQGLNHSTG KNIGIYPEIKAPWFHHQEGKDIAAKTLEVLKKYGYTGKQDNVYLQCFDVAELKRIKNE LEPKMGMDLNLVQLIAYTDWNETQQKQPDGRWVNYNYDWMFKPGAMKQVAEYADGIGP DYHMLVAEGSTKGNIKLTGMVQDAHQNKMVVHPYTVRADQLPDYATDVNQLYDILYNK AGVDGLFTDFPDKAVMFLQKND" misc_feature complement(2387535..2388587) /gene="glpQ" /locus_tag="STM2282" /note="glycerophosphodiester phosphodiesterase; Provisional; Region: glpQ; PRK11143" /db_xref="CDD:236859" gene complement(2388604..2390082) /gene="glpT" /locus_tag="STM2283" /db_xref="GeneID:1253805" CDS complement(2388604..2389962) /gene="glpT" /locus_tag="STM2283" /note="similar to E. coli sn-glycerol-3-phosphate permease (AAC75300.1); Blastp hit to AAC75300.1 (452 aa), 96% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="MFS family, sn-glycerol-3-phosphate transport protein" /protein_id="NP_461225.1" /db_xref="GeneID:1253805" /translation="MLSIFKPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLV RKNFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLIL AAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSV WNCAHNVGGGIPPLLFLLGMAWFNDWKAALYMPAFGAIVVALFAFAMMRDTPQSCGLP PIEEYKNDYPDDYNEKAEEELTAKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWS PTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTI ATIVYWMNPAGNPNVDMACMIIIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFG YLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLVVVMIGEKRHHDELQLKRN GG" misc_feature complement(2388607..2389962) /gene="glpT" /locus_tag="STM2283" /note="glycerol-3-phosphate transporter; Region: glpT; PRK11273" /db_xref="CDD:236889" regulatory complement(2388609..2388614) /regulatory_class="ribosome_binding_site" /gene="glpQ" /locus_tag="STM2282" /note="putative RBS for glpQ; RegulonDB:STMS1H002416" regulatory complement(2389971..2389976) /regulatory_class="ribosome_binding_site" /gene="glpT" /locus_tag="STM2283" /note="putative RBS for glpT; RegulonDB:STMS1H002417" regulatory complement(2390055..2390063) /regulatory_class="minus_10_signal" /gene="glpT" /locus_tag="STM2283" /note="putative -10_signal for glpT; RegulonDB:STMLTH004535" gene 2390063..2391863 /gene="glpA" /locus_tag="STM2284" /db_xref="GeneID:1253806" regulatory 2390063..2390071 /regulatory_class="minus_35_signal" /gene="glpA" /locus_tag="STM2284" /note="putative -35_signal for glpA; RegulonDB:STMLTH004536" protein_bind complement(2390071..2390091) /note="putative binding site for CRP, RegulonDB: STMS1H000080" /bound_moiety="CRP" protein_bind complement(2390071..2390091) /note="putative binding site for GlpR, RegulonDB: STMS1H000215" /bound_moiety="GlpR" regulatory complement(2390074..2390082) /regulatory_class="minus_35_signal" /gene="glpT" /locus_tag="STM2283" /note="putative -35_signal for glpT; RegulonDB:STMLTH004535" regulatory 2390087..2390095 /regulatory_class="minus_10_signal" /gene="glpA" /locus_tag="STM2284" /note="putative -10_signal for glpA; RegulonDB:STMLTH004536" protein_bind complement(2390096..2390128) /note="putative binding site for GlpR, RegulonDB: STMS1H000213" /bound_moiety="GlpR" protein_bind 2390111..2390135 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for FNR, RegulonDB: STMS1H000163" /bound_moiety="FNR" protein_bind 2390113..2390133 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for GlpR, RegulonDB: STMS1H000203" /bound_moiety="GlpR" protein_bind complement(2390119..2390139) /note="putative binding site for CRP, RegulonDB: STMS1H000105" /bound_moiety="CRP" protein_bind 2390123..2390143 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for CRP, RegulonDB: STMS1H000106" /bound_moiety="CRP" protein_bind complement(2390141..2390163) /note="putative binding site for GlpR, RegulonDB: STMS1H000212" /bound_moiety="GlpR" protein_bind complement(2390147..2390182) /note="putative binding site for GlpR, RegulonDB: STMS1H000209" /bound_moiety="GlpR" protein_bind 2390155..2390175 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for GlpR, RegulonDB: STMS1H000205" /bound_moiety="GlpR" protein_bind 2390165..2390185 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for GlpR, RegulonDB: STMS1H000211" /bound_moiety="GlpR" protein_bind complement(2390201..2390223) /note="putative binding site for GlpR, RegulonDB: STMS1H000214" /bound_moiety="GlpR" protein_bind 2390205..2390225 /gene="glpA" /locus_tag="STM2284" /note="putative binding site for GlpR, RegulonDB: STMS1H000210" /bound_moiety="GlpR" regulatory 2390224..2390229 /regulatory_class="ribosome_binding_site" /gene="glpA" /locus_tag="STM2284" /note="putative RBS for glpA; RegulonDB:STMS1H002418" CDS 2390235..2391863 /gene="glpA" /locus_tag="STM2284" /EC_number="1.1.5.3" /note="similar to E. coli sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit (AAC75301.1); Blastp hit to AAC75301.1 (542 aa), 92% identity in aa 1 - 542" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate dehydrogenase (anaerobic), large subunit" /protein_id="NP_461226.1" /db_xref="GeneID:1253806" /translation="MKTRDSQTSDVIIIGGGATGAGIARDCALRGLRVILVERHDIAT GATGRNHGLLHSGARYAVTDAESARECISENQILKRIARHCVEPTDGLFITLPEDDLA FQATFIRACEAAGIRAEAIDPQQARIIEPSVNPALIGAVKVPDGTVDPFRLTAANMLD AREHGAIVLTAHEVTGLIREGATVCGVHVRNHLTGETQTLHAPVVVNAAGIWGQRIAE YADLSIRMFPAKGSLLIMDHRINQHVINRCRKPSDADILVPGDTISLIGTTSTHIDYN EIDSNRVTADEVDILLREGEKLAPVMAKTRILRAYSGVRPLVASDDDPSGRNVSRGIV LFDHAERDGLDGFITITGGKLMTYRLMAEWATDAVCRKLGNTRPCITADTPLPGSKES TEHTLKRIISLPAPLRGSAVYRHGDRTPGWLSEGRQHRSLVCECEAVTAGEVQYAVEN LTVNSLLDLRRRTRVGMGTCQGELCACRAAGLLQRFNVTTAAQSITQLSEFLNERWKG VQPVAWGDALRESEFTRWVYQGLCGLEKEHQDEI" misc_feature 2390307..2391860 /gene="glpA" /locus_tag="STM2284" /note="anaerobic glycerol-3-phosphate dehydrogenase subunit A; Region: glpA; PRK11101" /db_xref="CDD:236847" gene 2391840..2393112 /gene="glpB" /locus_tag="STM2285" /db_xref="GeneID:1253807" regulatory 2391840..2391845 /regulatory_class="ribosome_binding_site" /gene="glpB" /locus_tag="STM2285" /note="putative RBS for glpB; RegulonDB:STMS1H002419" CDS 2391853..2393112 /gene="glpB" /locus_tag="STM2285" /EC_number="1.1.5.3" /note="similar to E. coli sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit (AAC75302.1); Blastp hit to AAC75302.1 (419 aa), 81% identity in aa 1 - 419" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate dehydrogenase (anaerobic), membrane anchor subunit" /protein_id="NP_461227.1" /db_xref="GeneID:1253807" /translation="MKFDTVIMGGGLAGLLCGLQLQQHGLRCAIVTRGQSALHFSSGS LDLLSALPDGQPVTDITAGLDALCRQAPEHPYSRLGAQKVLTLAQQAQTLLNASGAQL YGDVQQAHQRVTPLGTLRSTWLSSPEVPVWPLSAQRICVVGVSGLLDFQAHLAAASLR QRDLNVETAEIDLPELDVLRDNPTEFRAVNIARLLDNEEKWPLLYDALSPIATNCDMI IMPACFGLANDTLWRWLNERLPCALTLLPTLPPSVLGIRLHNQLQRQFVRQGGIWMPG DEVKKVTCRRGTVSEIWTRNHADIPLRPRFAVLASGSFFSSGLVAEREGIREPILGLD VQQTATRAEWYQQHFFDPQPWQQFGVVTDDAFRPSLAGNTVENLYAIGSVLAGFDPIA EGCGGGVCAVSALQAAHHIAERAGEQQ" misc_feature 2391859..2393088 /gene="glpB" /locus_tag="STM2285" /note="A large family of proteins that share a Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The NADB domain is found in numerous dehydrogenases of metabolic pathways such as glycolysis, and many other redox enzymes. NAD binding involves numerous...; Region: Rossmann-fold NAD(P)(+)-binding proteins; cl21454" /db_xref="CDD:473865" gene 2393096..2394299 /gene="glpC" /locus_tag="STM2286" /db_xref="GeneID:1253808" regulatory 2393096..2393101 /regulatory_class="ribosome_binding_site" /gene="glpC" /locus_tag="STM2286" /note="putative RBS for glpC; RegulonDB:STMS1H002420" CDS 2393109..2394299 /gene="glpC" /locus_tag="STM2286" /EC_number="1.1.5.3" /note="similar to E. coli sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit (AAC75303.1); Blastp hit to AAC75303.1 (396 aa), 94% identity in aa 1 - 395" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate dehydrogenase (anaerobic), K-small subunit" /protein_id="NP_461228.1" /db_xref="GeneID:1253808" /translation="MSDTRFESCIKCTVCTTACPVSRVNPGYPGPKQAGPDGERLRLK DGALYDEALKYCINCKRCEVACPSDVKIGDIIQRARAKYDTTRPSLRNFILSHTDLMG SVSTPFAPVVNTATALKPVRQLLDYALKIDHRRTLPKYSFGTFRRWYRSVAAQQAKYK DQVAFFHGCFVNYNHPQLGKDLIKVLNAMGTGVQLLSKEKCCGVPLIANGFTDKARKQ AISNVESLREAIAVKGIPVIATSSTCTFALRDEYPEVLDVDNAGLREHIELATRWLWR KLDAGKTLPLNPLPLKVVYHTPCHMEKMGWTLYTLELLRQIPGLELTVLDSQCCGIAG TYGFKKENYPTSQSIGAPLFRQIEESGADIVVTDCETCKWQIEMSTSKRCEHPITLLA QALG" misc_feature 2393115..2394293 /gene="glpC" /locus_tag="STM2286" /note="glycerol-3-phosphate dehydrogenase, anaerobic, C subunit; Region: glycerol3P_GlpC; TIGR03379" /db_xref="CDD:132422" gene 2394786..2395747 /locus_tag="STM2287" /db_xref="GeneID:1253809" regulatory 2394786..2394791 /regulatory_class="ribosome_binding_site" /locus_tag="STM2287" /note="putative RBS for STM2287; RegulonDB:STMS1H002421" CDS 2394794..2395747 /locus_tag="STM2287" /note="similar to E. coli putative sulfatase / phosphatase (AAC75329.1); Blastp hit to AAC75329.1 (403 aa), 30% identity in aa 27 - 294, 29% identity in aa 297 - 363" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461229.3" /db_xref="GeneID:1253809" /translation="MSDEALTLLFSAVENGDQNCIDLLCNLALRNDDLGHRVEKFLFD LFSGKRTGSSDIDKKINQACLVLHQIANNDITKDNTEWKKLHAPSRLLYMAGSATTDL SKKIGIAHKIMGDQFAQTDQEQVGVENLWCGARMLSSDELAAATQGLVQESPLLSVNY PIGLIHPTTKENILSTQLLEKIAQSGLSHNEVFLVNTGDHWLLCLFYKLAEKIKCLIF NTYYDLNENTKQEIIEAAKIAGISESDEVNFIEMNLQNNVPNGCGLFCYHTIQLLSNA GQNDPATTLREFAENFLTLSVEEQALFNTQTRRQIYEYSLQ" misc_feature 2394794..2395744 /locus_tag="STM2287" /note="type III secretion system effector deubiquitinase SseL; Region: PRK14848" /db_xref="CDD:184850" gene complement(2395857..2396037) /locus_tag="STM2288" /db_xref="GeneID:1253810" CDS complement(2395857..2396033) /locus_tag="STM2288" /note="similar to E. coli orf, hypothetical protein (AAC75309.1); Blastp hit to AAC75309.1 (400 aa), 83% identity in aa 342 - 397" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461230.1" /db_xref="GeneID:1253810" /translation="MPDGTYALRMRFSAYRYSLAIRQEVCAVMALNMLRRWLNGEDIT SEHGWIDVVESLTA" misc_feature complement(2395866..>2396030) /locus_tag="STM2288" /note="nicotinamide mononucleotide deamidase-related protein YfaY; Region: PRK03673" /db_xref="CDD:179629" regulatory complement(2396032..2396037) /regulatory_class="ribosome_binding_site" /locus_tag="STM2288" /note="putative RBS for STM2288; RegulonDB:STMS1H002422" gene complement(2396039..2396852) /locus_tag="STM2289" /db_xref="GeneID:1253811" CDS complement(2396039..2396842) /locus_tag="STM2289" /note="similar to E. coli orf, hypothetical protein (AAC75305.1); Blastp hit to AAC75305.1 (267 aa), 87% identity in aa 1 - 267" /codon_start=1 /transl_table=11 /product="putative 2,4-dihydoxyhept-2-ene-1,7-dioic acid aldolase" /protein_id="NP_461231.1" /db_xref="GeneID:1253811" /translation="MNALLSNPFKEGLRKGDTQIGLWLSSTTSYMAEIAATSGYDWLL IDGEHAPNTVQDLYHQLQAIAPYASQPVIRPIEGSKALIKQVLDIGAQTLLIPMVDTA EQARQVVSATRYPPLGQRGVGASVARAARWGRIDNYMAQANESLCLLVQVESKVALEN LDAILEVEGIDGVFIGPADLSASLGYPDNAGHPEVQRIIEACIYRIRAAGKAAGFLAV DPAMAQKCLAWGANFVAVGVDTMLYTEALDSRLAMFKSVQSVSTAKRSY" misc_feature complement(2396042..2396842) /locus_tag="STM2289" /note="2-keto-3-deoxy-L-rhamnonate aldolase; Provisional; Region: PRK10128" /db_xref="CDD:182257" regulatory complement(2396847..2396852) /regulatory_class="ribosome_binding_site" /locus_tag="STM2289" /note="putative RBS for STM2289; RegulonDB:STMS1H002423" gene complement(2396868..2398169) /gene="yfaV" /locus_tag="STM2290" /db_xref="GeneID:1253812" CDS complement(2396868..2398157) /gene="yfaV" /locus_tag="STM2290" /note="similar to E. coli putative transport protein (AAC75306.1); Blastp hit to AAC75306.1 (442 aa), 91% identity in aa 14 - 442" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_461232.1" /db_xref="GeneID:1253812" /translation="MSITLLDGVVKKNRARLIPFMLALYVLAFLDRSNIGFAKETYQI DTGLSNEAYALGAGIFFVVYAFLGVPANLLMRKFGARTWIGTTTLLWGFLSAAMAWAD SEAKFLIIRTLLGAAEAGFFPGMIYLTSQWFPQRNRASIMGLFYMGAPLALTLGSPLS GALLEMHGFMGHPGWFWMFVIEGLLAIGAGIFTFFWLDDTPQQARFLSLEEKNALIRQ LASEEEKKVTSRLADALRNGRVWQLAIIYLTIQVAVYGLIFFLPTQVAALLGTKVGFT ASVVTAVPWVAALLGTWLIPRYSDRTGDRRNVAAVTLLAAGIGIGLSGLVSPVLAILA LCVAAVGFIAVQPVFWTMPTQLLSGTALAAGIGFVNLFGAVGGFIAPILRVKAETLFA SDAAGLLTLAGVAIIGSLIIFTLSVNRPVAQSGAAHH" misc_feature complement(2396913..2398118) /gene="yfaV" /locus_tag="STM2290" /note="Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily; Region: MFS_ExuT_GudP_like; cd17319" /db_xref="CDD:340877" misc_feature complement(order(2397027..2397029,2397036..2397041, 2397048..2397053,2397060..2397062,2397108..2397110, 2397120..2397122,2397132..2397137,2397282..2397284, 2397294..2397296,2397381..2397383,2397390..2397398, 2397405..2397410,2397417..2397419,2397699..2397701, 2397708..2397713,2397720..2397722,2397780..2397782, 2397789..2397797,2397801..2397806,2397954..2397956, 2398050..2398052,2398059..2398064,2398071..2398076)) /gene="yfaV" /locus_tag="STM2290" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340877" regulatory complement(2398164..2398169) /regulatory_class="ribosome_binding_site" /gene="yfaV" /locus_tag="STM2290" /note="putative RBS for yfaV; RegulonDB:STMS1H002424" gene complement(2398213..2399430) /gene="yfaW" /locus_tag="STM2291" /db_xref="GeneID:1253813" CDS complement(2398213..2399430) /gene="yfaW" /locus_tag="STM2291" /note="similar to E. coli putative racemase (AAC75307.1); Blastp hit to AAC75307.1 (405 aa), 96% identity in aa 1 - 405" /codon_start=1 /transl_table=11 /product="putative galactonate dehydratase" /protein_id="NP_461233.1" /db_xref="GeneID:1253813" /translation="MENIMTLPKIKHVRAWFIGGATAEKGAGGGDYHDQGGNHWIDDH IATPMSKYRDYEQSRQSFGINVLGTLIVEVEAENRQTGFAVSTAGEMGCFIVEKHLNR FIEGKCVSDIKLIHDQMLGATMYYSGSGGLVMNTISCVDLALWDLFGKVVGLPVYKLL GGAVRDEIQFYATGARPDLAKEMGFIGGKMPTHWGPHDGDAGIRKDAAMVADMREKCG PDFWLMLDCWMSQDVNYATKLAHACAPFNLKWIEECLPPQQYEGYRELKRNAPAGMMV TSGEHHGTLQSFRTLAETGIDIMQPDVGWCGGLTTLVEIAALAKSRGQLVVPHGSSVY SHHAVITFTNTPFSEFLMTSPDCSTLRPQFDPILLDEPVPVNGRIHKSVLDKPGFGVE LNRDCHLKRPYSH" misc_feature complement(2398216..2399418) /gene="yfaW" /locus_tag="STM2291" /note="L-rhamnonate dehydratase; Provisional; Region: PRK15440" /db_xref="CDD:185337" gene complement(2399432..2400226) /gene="yfaX" /locus_tag="STM2292" /db_xref="GeneID:1253814" CDS complement(2399432..2400214) /gene="yfaX" /locus_tag="STM2292" /note="similar to E. coli putative regulator (AAC75308.1); Blastp hit to AAC75308.1 (260 aa), 87% identity in aa 1 - 260" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_461234.1" /db_xref="GeneID:1253814" /translation="MLESSKVPALTRAIDILNLIARIGPCSAAIIIETLRIPKSTAYL LLNELKRQRFISLDHQDNYCLWTKLVELSGHALSKMDLRELARPRLTQLMDETGLLCH LGIIDHENAYYILKVESSSTISVRSHEGKSLSLYRSGIGKCLLAWQPAAVRKAIIEQL VWERATLTTITEPQQLNDELERIRQRGWSFDNGEDYPDVRCVAAPVFNARNELTAAIS VVGTRLQINEENLDYLAGKAIACAKDISRLLGWKSPFDSLAS" misc_feature complement(2399462..2400208) /gene="yfaX" /locus_tag="STM2292" /note="DNA-binding transcriptional regulator, IclR family [Transcription]; Region: IclR; COG1414" /db_xref="CDD:441024" regulatory complement(2400221..2400226) /regulatory_class="ribosome_binding_site" /gene="yfaX" /locus_tag="STM2292" /note="putative RBS for yfaX; RegulonDB:STMS1H002425" gene complement(2400464..2401672) /locus_tag="STM2293" /db_xref="GeneID:1253815" CDS complement(2400464..2401660) /locus_tag="STM2293" /note="similar to E. coli orf, hypothetical protein (AAC75309.1); Blastp hit to AAC75309.1 (400 aa), 88% identity in aa 1 - 397" /codon_start=1 /transl_table=11 /product="putative nucleotide-utilizing enzyme related to molybdopterin-biosynthesis" /protein_id="NP_461235.1" /db_xref="GeneID:1253815" /translation="MLNVEMLSTGDEVLHGQIVDTNAAWLADFFFHQGVPLSRRNTVG DNLDSLVAILRERSQHADVLIVNGGLGPTSDDLSALAAATAKGEGLVLHQAWLTEMER YFQQRGRVMAPSNRKQAELPASAEFINNPLGTACGFALQLNRCLMFFTPGVPSEFKVM VEKEILPRLRARFSLPEPPLCLRLTTFGRSESDLAQRLDSLPLPPGVTMGYRSSMPII ELKLTGPATQREAMLALWPEVKRVAGQNLIFEGTENLPAQIARRLQERQLSLTLSEQY TSGLLALQLSRAGAPVLASEVVPSQEETLAQTAHWTTERRSNHYAGLALAVSGLENEH LNFALATPDGTYALRVRFSANRYSLAIRQEVCAMMALNMLRRWLNGEDITSEHGWIDV VESLTS" misc_feature complement(2400473..2401660) /locus_tag="STM2293" /note="nicotinamide mononucleotide deamidase-related protein YfaY; Region: PRK03673" /db_xref="CDD:179629" regulatory complement(2401667..2401672) /regulatory_class="ribosome_binding_site" /locus_tag="STM2293" /note="putative RBS for STM2293; RegulonDB:STMS1H002426" gene complement(2401775..2402422) /gene="yfaZ" /locus_tag="STM2294" /db_xref="GeneID:1253816" CDS complement(2401775..2402422) /gene="yfaZ" /locus_tag="STM2294" /note="similar to E. coli orf, hypothetical protein (AAC75310.1); Blastp hit to AAC75310.1 (187 aa), 86% identity in aa 8 - 187" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461236.1" /db_xref="GeneID:1253816" /translation="MFLEWFLSALIPQRLAVQFCRFGEFFFMCLLERVKMKKSILLGF AGMLFVSASAQAISISGQAGEDYTNIGVGFGTESTGLALSGNWMHNDDDGDAAGVGLG LNIPVGPLLATVGGKGIYTNPKDSDEGYAAAVGGGLQWKIGNSFRLFGEYYYSPDSLS SGIDSYEEANAGARFTIMRPLSIEAGYRYLNLAGKDGNRDNAIADGPYVGVNASF" misc_feature complement(2401778..2402317) /gene="yfaZ" /locus_tag="STM2294" /note="YfaZ precursor; Region: YfaZ; pfam07437" /db_xref="CDD:284781" gene 2402583..2403021 /gene="yfaO" /locus_tag="STM2295" /db_xref="GeneID:1253817" regulatory 2402583..2402588 /regulatory_class="ribosome_binding_site" /gene="yfaO" /locus_tag="STM2295" /note="putative RBS for yfaO; RegulonDB:STMS1H002427" CDS 2402596..2403021 /gene="yfaO" /locus_tag="STM2295" /note="similar to E. coli orf, hypothetical protein (AAC75311.1); Blastp hit to AAC75311.1 (141 aa), 87% identity in aa 1 - 141" /codon_start=1 /transl_table=11 /product="putative NTP pyrophosphohydrolases including oxidative damage repair enzymes" /protein_id="NP_461237.1" /db_xref="GeneID:1253817" /translation="MRQRTIVCPLIQNDGCYLLCKMADNRGVFPGQWALSGGGVEPGE RIEEALRREIREELGEQLILSDITPWTFRDDIRIKTYADGRQEEIYMIYLIFDCVSAN RDICINDEFQDYAWVKPEELALYDLNVATRHTLALKGLL" misc_feature 2402596..2403018 /gene="yfaO" /locus_tag="STM2295" /note="nucleoside triphosphatase NudI; Provisional; Region: PRK15472" /db_xref="CDD:185369" gene complement(2403066..2403680) /gene="ais" /locus_tag="STM2296" /db_xref="GeneID:1253818" CDS complement(2403066..2403671) /gene="ais" /locus_tag="STM2296" /note="similar to E. coli protein induced by aluminum (AAC75312.1); Blastp hit to AAC75312.1 (200 aa), 68% identity in aa 1 - 198" /codon_start=1 /transl_table=11 /product="aluminum inducible protein" /protein_id="NP_461238.1" /db_xref="GeneID:1253818" /translation="MLAFTLRFIKNKRYFAILAGALVIIAGLTSQHAWSGNGLPQING KALAALAKQHPVVVLFRHAERCDRSDNTCLSDSTGITVKGAQDARALGKAFSADIQNY NLYSSNTVRTIQSATWFSAGRSLTVDKKMMDCGSGIYASINTLLKKSQNKNIVIFTHN HCLTYIAKNKRGVKFDPDYLNALVMHAENGKLFLDGEFVPG" misc_feature complement(2403069..2403671) /gene="ais" /locus_tag="STM2296" /note="lipopolysaccharide core heptose(II)-phosphate phosphatase; Provisional; Region: PRK15416" /db_xref="CDD:185314" misc_feature complement(order(2403192..2403197,2403339..2403341, 2403486..2403491)) /gene="ais" /locus_tag="STM2296" /note="catalytic core [active]" /db_xref="CDD:132716" regulatory complement(2403675..2403680) /regulatory_class="ribosome_binding_site" /gene="ais" /locus_tag="STM2296" /note="putative RBS for ais; RegulonDB:STMS1H002428" gene 2403942..2405109 /gene="yfbE" /locus_tag="STM2297" /db_xref="GeneID:1253819" regulatory 2403942..2403947 /regulatory_class="ribosome_binding_site" /gene="yfbE" /locus_tag="STM2297" /note="putative RBS for yfbE; RegulonDB:STMS1H002429" CDS 2403952..2405109 /gene="yfbE" /locus_tag="STM2297" /note="similar to E. coli putative enzyme (AAC75313.1); Blastp hit to AAC75313.1 (390 aa), 82% identity in aa 6 - 390" /codon_start=1 /transl_table=11 /product="putative DegT/DnrJ/EryC1/StrS family" /protein_id="NP_461239.3" /db_xref="GeneID:1253819" /translation="MAEGKMMSDFLPFSRPAMGAEELAAVKTVLDSGWITTGPKNQEL EAAFCRLTGNQYAVAVSSATAGMHIALMALGIGEGDEVITPSMTWVSTLNMIVLLGAN PVMVDVDRDTLMVTPEHIEAAITPQTKAIIPVHYAGAPADLDAIYALGERYGIPVIED AAHATGTSYKGRHIGARGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLG VDAWDRQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKLDALNARRAAIAAQYHQA MADLPFQPLSLPSWEHIHAWHLFIIRVDEARCGITRDALMASLKTKGIGTGLHFRAAH TQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIAGQ" misc_feature 2403970..2405106 /gene="yfbE" /locus_tag="STM2297" /note="UDP-4-amino-4-deoxy-L-arabinose aminotransferase; Region: PRK11658" /db_xref="CDD:183263" misc_feature order(2404138..2404143,2404429..2404431,2404438..2404440, 2404498..2404500,2404510..2404515,2404936..2404938) /gene="yfbE" /locus_tag="STM2297" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99740" misc_feature order(2404138..2404143,2404213..2404215,2404429..2404431, 2404438..2404440,2404498..2404500,2404513..2404515) /gene="yfbE" /locus_tag="STM2297" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99740" misc_feature 2404513..2404515 /gene="yfbE" /locus_tag="STM2297" /note="catalytic residue [active]" /db_xref="CDD:99740" gene 2405099..2406095 /gene="pmrF" /locus_tag="STM2298" /db_xref="GeneID:1253820" regulatory 2405099..2405104 /regulatory_class="ribosome_binding_site" /gene="pmrF" /locus_tag="STM2298" /note="putative RBS for pmrF; RegulonDB:STMS1H002430" CDS 2405112..2406095 /gene="pmrF" /locus_tag="STM2298" /note="similar to E. coli putative sugar transferase (AAC75314.1); Blastp hit to AAC75314.1 (322 aa), 87% identity in aa 1 - 318" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_461240.1" /db_xref="GeneID:1253820" /translation="MFDAAPIKKVSVVIPVYNEQESLPELIRRTTTACESLGKAWEIL LIDDGSSDSSAELMVKASQEADSHIISILLNRNYGQHAAIMAGFSHVSGDLIITLDAD LQNPPEEIPRLVAKADEGFDVVGTVRQNRQDSLFRKSASKIINLLIQRTTGKAMGDYG CMLRAYRRPIIDTMLRCHERSTFIPILANIFARRATEIPVHHAEREFGDSKYSFMRLI NLMYDLVTCLTTTPLRLLSLLGSVIAIGGFSLSVLLIVLRLALGPQWAAEGVFMLFAV LFTFIGAQFIGMGLLGEYIGRIYNDVRARPRYFVQQVIYPESTPFTEESHQ" misc_feature 2405118..2406092 /gene="pmrF" /locus_tag="STM2298" /note="undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional; Region: PRK10714" /db_xref="CDD:182669" gene 2406078..2408074 /gene="yfbG" /locus_tag="STM2299" /db_xref="GeneID:1253821" regulatory 2406078..2406083 /regulatory_class="ribosome_binding_site" /gene="pmrF" /locus_tag="STM2298" /note="putative RBS for yfbG; RegulonDB:STMS1H002431" CDS 2406092..2408074 /gene="yfbG" /locus_tag="STM2299" /note="hypothetical 73.6 Kda protein in ais-pmrD intergenic region. (SW:YFBG_SALTY)" /codon_start=1 /transl_table=11 /product="putative transformylase" /protein_id="NP_461241.1" /db_xref="GeneID:1253821" /translation="MKAVIFAYHDMGCQGVQAVLDAGYEIAAIFTHADNPAENTFFGS VSRQAAELGIPVYAPDNVNHPIWVDRIAELAPDIIFSFYYRNLLSEEILHLAPAGAFN LHGSLLPAYRGRAPLNWVLVNGESETGVTLHRMVKRADAGEIVASQRVAIAQDDVALT LHHKLCQAARQLLNSILPTMKCGDIPSVPQRESDSTYYGRRRPEDGLIDWHKPVSTVH NLVRAVAAPWPGAFSYNGSQKFTIWSSRMCPDAQGALPGSVISVSPLRVACADGALEI ITGQAGDDITVQGSQLAQTLGLVAGARLNRPPATSGKRRIRVLILGVNGFIGNHLTER LLNEENYEVYGMDIGSNAISRFLLHPRFHFVEGDISIHSEWIEYHVKKCDVVLPLVAI ATPIEYTRNPLRVFELDFEENLRIIRYCVKYRKRVVFPSTSEVYGMCTDASFDEDKSN LIVGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDSLNAARIGS SRAITQLILNLVEGTPIKLIDGGQQKRCFTDIRDGIEALFRIIVNDGDRCDGKIINIG NPDNEASIQELATLLLDSFDKHPLRCHFPPFAGFQVVESRSYYGKGYQDVAHRKPSID NARRCLGWEPSIAMRDTVEETLDFFLRSVDIAERAS" misc_feature 2406092..2408071 /gene="yfbG" /locus_tag="STM2299" /note="bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA; Region: PRK08125" /db_xref="CDD:236156" gene 2408057..2408970 /locus_tag="STM2300" /db_xref="GeneID:1253822" regulatory 2408057..2408062 /regulatory_class="ribosome_binding_site" /locus_tag="STM2300" /note="putative RBS for STM2300; RegulonDB:STMS1H002432" CDS 2408071..2408970 /locus_tag="STM2300" /note="similar to E. coli orf, hypothetical protein (AAC75316.1); Blastp hit to AAC75316.1 (296 aa), 73% identity in aa 1 - 295" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461242.1" /db_xref="GeneID:1253822" /translation="MTKVGLRIDVDTLRGTREGVPRLLATLHRHGVQASFFFSVGPDN MGRHLWRLIKPRFLWKMLRSNAASLYGWDILLAGTAWPGKNIGNANAGIIRETATYHE TGLHAWDHHAWQTHSGHWSIRQLEEDIARGITALEAIIGKPVTCSAAAGWRADGRVVR AKESFNLRYNSDCRGTTLFRPLLMPGQTGTPQIPVTLPTWDEVIGPAVQAQSFNTWII SRMLQDKGTPVYTIHAEVEGIVHQPLFEDLLVRARDAGITFCPLGELLPASPESLPLG QIVRGHIPGREGWLGCQQAASAS" misc_feature 2408071..2408958 /locus_tag="STM2300" /note="4-deoxy-4-formamido-L-arabinose-phosphoundecaprenol deformylase ArnD; Provisional; Region: PRK15394" /db_xref="CDD:185292" gene 2408950..2410613 /gene="pqaB" /locus_tag="STM2301" /db_xref="GeneID:1253823" regulatory 2408950..2408955 /regulatory_class="ribosome_binding_site" /locus_tag="STM2300" /note="putative RBS for pqaB; RegulonDB:STMS1H002433" CDS 2408967..2410613 /gene="pqaB" /locus_tag="STM2301" /note="PqaB; affects polymycin B resistance and lipopolysaccharide synthesis; similar to E. coli orf, hypothetical protein (AAC75317.1); Blastp hit to AAC75317.1 (550 aa), 71% identity in aa 1 - 550" /codon_start=1 /transl_table=11 /product="putative melittin resistance protein" /protein_id="NP_461243.1" /db_xref="GeneID:1253823" /translation="MMKSIRYYLAFAAFIALYYVIPVNSRLLWQPDETRYAEISREML ASGDWIVPHFLGLRYFEKPIAGYWINSLGQWLFGATNFGVRAGAILTTLLAAALVAWL TFRLWRDKRTALLASVIFLSLFAVYSIGTYAVLDPMIALWLTAGMCCFWQGMQATTRM GKIGMFLLLGATCGLGVLTKGFLALAVPVVSVLPWVIVQKRWKDFLLYGWLAVLSCFV VVLPWAIAIARREADFWHYFFWVEHIQRFAMSDAQHKAPFWYYLPVLLAGSLPWLGLL PGALKLGWRERNGAFYLLGWTIMPLLFFSIAKGKLPTYVLSCFAPIAILMARFVLHNV KEGVAALRVNGGINLVFGLVGIVAAFVVSSWGPLKSPVWTHIETYKVFCVWGVFTVWA FVGWYSLCHSQKYLLPAFCPLGLALLFGFSIPDRVMESKQPQFFVEMTQAPLASSRYI LADNVGVAAGLAWSLKRDDIMLYGHAGELRYGLSYPDVQDKFVKADDFNAWLNQHRQE GIITLVLSIAKDEDISALSLPPADNIDYQGRLVLIQYRPK" misc_feature 2408967..2410607 /gene="pqaB" /locus_tag="STM2301" /note="lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase; Region: arnT; PRK13279" /db_xref="CDD:237330" gene 2410610..2410945 /locus_tag="STM2302" /db_xref="GeneID:1253824" CDS 2410610..2410945 /locus_tag="STM2302" /note="unknown (gi|2921424)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461244.1" /db_xref="GeneID:1253824" /translation="MIGVVLVLASLLSVGGQLCQKQATRPLTAGGRRRHLMLWLGLAL ICMGAAMVLWLLVLQTLPVGIAYPMLSLNFVWVTLAAWKIWHEQVPPRHWLGVALIIS GIIILGSAA" misc_feature 2410610..2410903 /locus_tag="STM2302" /note="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional; Region: PRK15051" /db_xref="CDD:185011" gene 2410928..2411322 /locus_tag="STM2303" /db_xref="GeneID:1253825" regulatory 2410928..2410933 /regulatory_class="ribosome_binding_site" /locus_tag="STM2302" /note="putative RBS for STM2303; RegulonDB:STMS1H002434" CDS 2410945..2411322 /locus_tag="STM2303" /note="similar to E. coli putative transport/receptor protein (AAC75318.1); Blastp hit to AAC75318.1 (222 aa), 68% identity in aa 95 - 216" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461245.1" /db_xref="GeneID:1253825" /translation="MGVMWGLISVAIASLAQLSLGFAMMRLPSIAHPLAFISGLGAFN AATLALFAGLAGYLVSVFCWQKTLHTLALSKAYALLSLSYVLVWVASMLLPGLQGAFS LKAMLGVLCIMAGVMLIFLPARS" misc_feature 2410945..2411319 /locus_tag="STM2303" /note="4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional; Region: PRK02971" /db_xref="CDD:235094" gene complement(2411317..2411585) /gene="pmrD" /locus_tag="STM2304" /db_xref="GeneID:1253826" CDS complement(2411317..2411574) /gene="pmrD" /locus_tag="STM2304" /note="polymyxin b resistance protein PMRD. (SW:PMRD_SALTY)" /codon_start=1 /transl_table=11 /product="polymyxin resistance protein B" /protein_id="NP_461246.1" /db_xref="GeneID:1253826" /translation="MEWLVKKSHYVKKRACHVLVLCDSGGSLKMIAEANSMILLSPGD ILSPLQDAQYCINREKHQTLKIVDARCYSCDEWQRLTRKPS" misc_feature complement(2411320..2411574) /gene="pmrD" /locus_tag="STM2304" /note="signal transduction protein PmrD; Provisional; Region: PRK15450" /db_xref="CDD:185347" regulatory complement(2411580..2411585) /regulatory_class="ribosome_binding_site" /gene="pmrD" /locus_tag="STM2304" /note="putative RBS for pmrD; RegulonDB:STMS1H002435" gene complement(2411672..2413059) /gene="menE" /locus_tag="STM2305" /db_xref="GeneID:1253827" CDS complement(2411672..2413039) /gene="menE" /locus_tag="STM2305" /EC_number="6.2.1.26" /note="O-succinylbenzoic acid--coA ligase. (SW:MENE_SALTY)" /codon_start=1 /transl_table=11 /product="o-succinylbenzoate-CoA ligase" /protein_id="NP_461247.1" /db_xref="GeneID:1253827" /translation="MTFTDWPWRHWRQVRSQAPALRLNDEVLSWRALCERIDVLAGGF AAQGVREGDGVLLRAGNQPRTLLAWLALMQCGARVLPVNPQLPQTLLEALVPKLTLRF ALTLEGENAFSGLTALQIQKSTAAYAVAWQPQRLVSMTLTSGSTGLPKAAVHTCQAHL ASAQGVLSLMPFGPQDDWLLSLPLFHVSGQGIMWRWLFAGARMTVRDKQPLEQMLAGC THASLVPTQLWRLLANRAAVTLKAVLLGGAVIPVELTDQASKQGIRCWCGYGLTEFAS TVCAKEADGSDDVGAPLPGREIRIVDNEVWLRAASMAEGYWRDGKLIPLVNDEGWFAT RDRGELNHGRLTIAGRLDNLFFSGGEGIQPEEVERVINAHPLVQQAFVVPVEDKEFGH RPVAVVEYASQAGDVNLAEWVRDKLARFQQPVRWLTMPSELKNGGIKISRRALQQWVC ENCKN" misc_feature complement(2411675..2413039) /gene="menE" /locus_tag="STM2305" /note="O-succinylbenzoic acid--CoA ligase; Provisional; Region: PRK09029" /db_xref="CDD:236363" gene complement(2413036..2414010) /gene="menC" /locus_tag="STM2306" /db_xref="GeneID:1253828" CDS complement(2413036..2413998) /gene="menC" /locus_tag="STM2306" /EC_number="4.2.1.-" /note="similar to E. coli o-succinylbenzoyl-CoA synthase; conversion of chorismate to 2-o-succinylbenzoyl-CoA (AAC75321.1); Blastp hit to AAC75321.1 (320 aa), 88% identity in aa 1 - 320" /codon_start=1 /transl_table=11 /product="o-succinylbenzoyl-CoA synthase" /protein_id="NP_461248.1" /db_xref="GeneID:1253828" /translation="MRSAQVYRWQIPMDAGVVLRDRRLKTRDGLYVCLRDGEREGWGE ISPLPGFSQETWEEAQTALLTWVNDWLQGSEGLPEMPSVAFGASCALAELTGVLPEAA DYRAAPLCTGDPDDLVLRLADMPGEKIAKVKVGLYEAVRDGMVVNLLLEAIPDLHLRL DANRAWTPLKAQQFAKYVNPDYRARIAFLEEPCKTRDDSRAFARETGIAIAWDESLRE ADFTFEAEEGVRAVVIKPTLTGSLDKVREQVAAAHALGLTAVISSSIESSLGLTQLAR IAAWLTPGTLPGLDTLHLMQAQQIRPWPGSALPCLKREELERLL" misc_feature complement(2413039..2413998) /gene="menC" /locus_tag="STM2306" /note="O-succinylbenzoate synthase; Provisional; Region: PRK05105" /db_xref="CDD:235345" regulatory complement(2413054..2413059) /regulatory_class="ribosome_binding_site" /gene="menC" /locus_tag="STM2306" /note="putative RBS for menE; RegulonDB:STMS1H002436" gene complement(2413998..2414866) /gene="menB" /locus_tag="STM2307" /db_xref="GeneID:1253829" CDS complement(2413998..2414855) /gene="menB" /locus_tag="STM2307" /EC_number="4.1.3.36" /note="similar to E. coli dihydroxynaphtoic acid synthetase (AAC75322.1); Blastp hit to AAC75322.1 (285 aa), 96% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="dihydroxynaphtoic acid synthetase" /protein_id="NP_461249.1" /db_xref="GeneID:1253829" /translation="MIYPDETMLYAPVEWHDCSEGYTDIRYEKSTDGIAKITINRPQV RNAFRPLTVKEMIQALADARYDDNVGVIILTGEGDKAFCAGGDQKVRGDYGGYQDDSG VHHLNVLDFQRQIRTCPKPVVAMVAGYSIGGGHVLHMMCDLTIAAENAIFGQTGPKVG SFDGGWGASYMARIVGQKKAREIWFLCRQYDAQQALDMGLVNTVVPLADLEKETVRWC REMLQNSPMALRCLKAALNADCDGQAGLQELAGNATMLFYMTEEGQEGRNAFNQKRQP DFSKFKRNP" misc_feature complement(2414001..2414828) /gene="menB" /locus_tag="STM2307" /note="dihydroxynaphthoic acid synthetase; Validated; Region: PRK07396" /db_xref="CDD:180958" misc_feature complement(order(2414379..2414381,2414388..2414393, 2414457..2414465,2414469..2414471,2414592..2414606, 2414616..2414618,2414715..2414717,2414721..2414723)) /gene="menB" /locus_tag="STM2307" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:119339" misc_feature complement(order(2414457..2414459,2414598..2414600)) /gene="menB" /locus_tag="STM2307" /note="oxyanion hole (OAH) forming residues [active]" /db_xref="CDD:119339" misc_feature complement(order(2414193..2414198,2414205..2414207, 2414250..2414252,2414259..2414261,2414292..2414294, 2414301..2414306,2414310..2414315,2414319..2414324, 2414337..2414342,2414346..2414354,2414358..2414360, 2414376..2414387,2414421..2414432,2414493..2414495, 2414517..2414519)) /gene="menB" /locus_tag="STM2307" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:119339" regulatory complement(2414005..2414010) /regulatory_class="ribosome_binding_site" /gene="menB" /locus_tag="STM2307" /note="putative RBS for menC; RegulonDB:STMS1H002437" regulatory complement(2414861..2414866) /regulatory_class="ribosome_binding_site" /gene="menB" /locus_tag="STM2307" /note="putative RBS for menB; RegulonDB:STMS1H002438" gene complement(2414870..2415642) /gene="yfbB" /locus_tag="STM2308" /db_xref="GeneID:1253830" CDS complement(2414870..2415628) /gene="yfbB" /locus_tag="STM2308" /note="similar to E. coli putative enzyme (AAC75323.1); Blastp hit to AAC75323.1 (252 aa), 76% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="putative enzyme" /protein_id="NP_461250.1" /db_xref="GeneID:1253830" /translation="MMLHAQHMPGQPGTPSLVFLHGFSGDCHEWQPVGEQFHGCSRLY IDLPGHGGSAAIPVDGFADVIRLLRATLISYNILKFWLVGYSLGGRVAMMAACQGIPG LCGLVVEGGHPGLQNEQARAERRLSDGRWAERFRHEPLTEVFHDWYQQPVFASLTAQQ RQALTALRSQNNGETLAAMLEATSLAVQPDLREALNALAFPFYYLCGERDSKFRALAQ EVAATCHVIRNAGHNAHRENPAGVVDSLAQILRL" misc_feature complement(2414873..2415592) /gene="yfbB" /locus_tag="STM2308" /note="2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase; Provisional; Region: PRK11126" /db_xref="CDD:236855" gene complement(2415625..2417307) /gene="menD" /locus_tag="STM2309" /db_xref="GeneID:1253831" CDS complement(2415625..2417295) /gene="menD" /locus_tag="STM2309" /EC_number="4.1.3.-" /note="bifunctional; similar to E. coli 2-oxoglutarate decarboxylase; SHCHC synthase (AAC75324.1); Blastp hit to AAC75324.1 (556 aa), 91% identity in aa 1 - 556" /codon_start=1 /transl_table=11 /product="2-oxoglutarate decarboxylase" /protein_id="NP_461251.1" /db_xref="GeneID:1253831" /translation="MSVSAFNRRWAAVILEALTRHGVRHVCIAPGSRSTPLTLAAAEN PAFIHHTHFDERGLGHLALGLAKVSQQPVAVIVTSGTAVANLYPALIEAGLTGEKLIL LTADRPPELIDCGANQAIRQAGMFASHPSQTLSLPRPTQDIPARWLVSTIDNALAMLH AGALHINCPFAEPLYGDMNDTGLVWQQRLGDWWQDEKPWLREARRLESDKQRDWFFWR QKRGVVVAGRMSAEEGKKVAQWAQTLGWPLIGDVLSQTGQPLPCADLWLGNAKAVTEL QQAQIVVQLGSSLTGKRLLQWQATCEPEEYWVIDNIEGRLDPAHHRGRRLVAKIADWL ELHPAEKRKPWCVEIPRLAELAWQRVVAQRDTFGEAQLAHRIRDYLPEQGQLFVGNSL VVRLIDALSQLPAGYPVYSNRGASGIDGLLSTAAGVQRASAKSTLAIVGDLSALYDLN ALALLRQVSAPFVLIVVNNNGGQIFSLLPTPQSKRERFYLMPQNVHFDHAAAMFNLRY HRPENWEELESALAGAWRTPATTVIELVVNDTDGAQTLQQLLAQVSHL" misc_feature complement(2415628..2417292) /gene="menD" /locus_tag="STM2309" /note="2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1- carboxylate synthase [Coenzyme transport and metabolism]; Region: MenD; COG1165" /db_xref="CDD:440779" regulatory complement(2415637..2415642) /regulatory_class="ribosome_binding_site" /gene="yfbB" /locus_tag="STM2308" /note="putative RBS for yfbB; RegulonDB:STMS1H002439" regulatory complement(2417302..2417307) /regulatory_class="ribosome_binding_site" /gene="menD" /locus_tag="STM2309" /note="putative RBS for menD; RegulonDB:STMS1H002440" gene complement(2417381..2418690) /gene="menF" /locus_tag="STM2310" /db_xref="GeneID:1253832" CDS complement(2417381..2418676) /gene="menF" /locus_tag="STM2310" /EC_number="5.4.4.2" /note="menaquinone biosynthesis; similar to E. coli isochorismate hydroxymutase 2, menaquinone biosynthesis (AAC75325.1); Blastp hit to AAC75325.1 (356 aa), 78% identity in aa 1 - 356; isochorismate synthase" /codon_start=1 /transl_table=11 /product="isochorismate hydroxymutase 2" /protein_id="NP_461252.1" /db_xref="GeneID:1253832" /translation="MHSITTALENLTRQLSQEIPATPGLCVFDAPFPLNDAFDALSWL ASQSSFPQFYWQQRNGDEEAAVLGAITVFSSLDLAQRFLRQHAQPDLRIWGLNAFEPK EGYLLLPRLEWRRSGGTATLRLHLHSDVSLRDDARQAKAFLASLVGIKPVPALRLSLT SEQHWPDKDGWVKLIQQATHTIAQEAFDKVVLARATDLQFSRPVNAAAMMASSRRLNL NCYHFFMAFSADTAFLGSSPERLWRRRETALRTEALAGTVANHPDNHKAWQLGEWLMK DDKNQRENMLVVEDICQRLQNCTHSLDVLPPQVLRLRKVQHLRRCIWTALNQADDTLC LHQLQPTAAVAGIPREPARCFIEQHEPFEREWYAGSAGYLSTRQSEFCVTLRSAKVTA NVVRLYAGAGIVRGSDPEQEWQEIDNKAAGLRTLLQMDA" misc_feature complement(2417387..2418676) /gene="menF" /locus_tag="STM2310" /note="menaquinone-specific isochorismate synthase; Provisional; Region: PRK15012" /db_xref="CDD:184974" regulatory complement(2418685..2418690) /regulatory_class="ribosome_binding_site" /gene="menF" /locus_tag="STM2310" /note="putative RBS for menF; RegulonDB:STMS1H002441" gene complement(2418777..2419095) /gene="elaB" /locus_tag="STM2311" /db_xref="GeneID:1253833" CDS complement(2418777..2419088) /gene="elaB" /locus_tag="STM2311" /note="similar to E. coli orf, hypothetical protein (AAC75326.1); Blastp hit to AAC75326.1 (101 aa), 89% identity in aa 1 - 101" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461253.3" /db_xref="GeneID:1253833" /translation="MRMSYQFGESRVDDDLTLLSETLEEVLRSSGDPADQKYIELKAR AEQALEEVKNRVSHASDSYYYRAKQAVYKADDYVHEKPWQGIGVGAAVGLVLGLLLAR R" misc_feature complement(2418831..2419082) /gene="elaB" /locus_tag="STM2311" /note="stress response protein ElaB; Region: PRK10404" /db_xref="CDD:182432" regulatory complement(2419090..2419095) /regulatory_class="ribosome_binding_site" /gene="elaB" /locus_tag="STM2311" /note="putative RBS for elaB; RegulonDB:STMS1H002442" gene complement(2419137..2419610) /gene="elaA" /locus_tag="STM2312" /db_xref="GeneID:1253834" CDS complement(2419137..2419598) /gene="elaA" /locus_tag="STM2312" /note="similar to E. coli orf, hypothetical protein (AAC75327.1); Blastp hit to AAC75327.1 (153 aa), 80% identity in aa 1 - 153" /codon_start=1 /transl_table=11 /product="putative acyltransferase" /protein_id="NP_461254.1" /db_xref="GeneID:1253834" /translation="MIDWQDLHHSELTVPQLYALLKLRCAVFVVEQRCPYLDVDGDDL VGDNRHILGWHQDELVAYARILKSDNESDPVVIGRVIVSDAWRGAKLGQQLMAKTLES CGRHWPDKPLYLGAQAHLQPFYARFGFIPVTDVYDEDGIPHRGMAREVHQA" misc_feature complement(2419140..2419598) /gene="elaA" /locus_tag="STM2312" /note="GNAT family N-acetyltransferase; Region: PRK10314" /db_xref="CDD:182373" misc_feature complement(order(2419320..2419325,2419353..2419361)) /gene="elaA" /locus_tag="STM2312" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" regulatory complement(2419605..2419610) /regulatory_class="ribosome_binding_site" /gene="elaA" /locus_tag="STM2312" /note="putative RBS for elaA; RegulonDB:STMS1H002443" gene 2419650..2420576 /gene="elaC" /locus_tag="STM2313" /db_xref="GeneID:1253835" regulatory 2419650..2419655 /regulatory_class="ribosome_binding_site" /gene="elaC" /locus_tag="STM2313" /note="putative RBS for elaC; RegulonDB:STMS1H002444" CDS 2419659..2420576 /gene="elaC" /locus_tag="STM2313" /note="similar to E. coli orf, hypothetical protein (AAC75328.1); Blastp hit to AAC75328.1 (311 aa), 80% identity in aa 7 - 311" /codon_start=1 /transl_table=11 /product="putative metal-dependent hydrolase" /protein_id="NP_461255.1" /db_xref="GeneID:1253835" /translation="MELIFLGTSAGVPTRSRNVTAILLHLQHPTQPGVWLFDCGEGTQ HQMLNTAFHPGKLERIFISHLHGDHLFGLPGLLCSRSMAGNPHPLTVYGPQGVREFIA TTLRLSGSWTDFPLQIEEISAGDILDDGLRKVTAFRLEHPLECYGYRVVEHDKPGALN ARALKAAGVTPGPLFQALKAGKTVTLADGRQINGADYLAPAVAGKSVAIFGDTAPCEA ALALAQGVDVMVHETTLDASMEEKANARGHSSTRQTATLAREAAVGRLIMTHISSRYD DKGCQRLLAECRAIFPATELAYDFSVFPV" misc_feature 2419665..2420573 /gene="elaC" /locus_tag="STM2313" /note="ribonuclease BN; Region: true_RNase_BN; TIGR02649" /db_xref="CDD:131697" misc_feature order(2419770..2419772,2419845..2419850,2419854..2419856, 2419860..2419865,2420079..2420084,2420292..2420294, 2420352..2420354,2420466..2420468) /gene="elaC" /locus_tag="STM2313" /note="putative active site [active]" /db_xref="CDD:293803" gene 2420636..2421643 /locus_tag="STM2314" /db_xref="GeneID:1253836" regulatory 2420636..2420641 /regulatory_class="ribosome_binding_site" /locus_tag="STM2314" /note="putative RBS for STM2314; RegulonDB:STMS1H002445" CDS 2420642..2421643 /locus_tag="STM2314" /EC_number="2.7.3.-" /note="similar to E. coli positive regulator of CheA protein activity (AAC74957.1); Blastp hit to AAC74957.1 (167 aa), 25% identity in aa 18 - 151" /codon_start=1 /transl_table=11 /product="putative chemotaxis signal transduction protein" /protein_id="NP_461256.1" /db_xref="GeneID:1253836" /translation="MDNFQKDIDDRANLTLSNRFELLLFRLGTSLHEQKSELFGINVF KLREIVPMPAFTRPAGMKAPLLGMVNIRDQVIPVIDLPAVAGCKPETGLNILLITEYA RSVQAFAVESVENIMRLDWQQVHTAEKAVNGRYITSIACLDDNKETNNLALVLDVEQI LYDIVPSSHDLRATNLKTNKFYITPGAVAIVAEDSKVARAMLEKGLNAMGIPHQMHVT GKDAWERIQQLAQEAEAEGKPISEKIALVLTDLEMPEMDGFTLTRKIKTDERLKKIPV VIHSSLSGSANEDHIRKVKADGYVAKFEINELSSVIQEVLERAATNSQGPLISRKSA" misc_feature 2420684..2421124 /locus_tag="STM2314" /note="Chemotaxis signal transduction protein CheW [Signal transduction mechanisms]; Region: CheW; COG0835" /db_xref="CDD:440597" misc_feature 2421206..2421550 /locus_tag="STM2314" /note="phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs); Region: REC; cl19078" /db_xref="CDD:473134" misc_feature order(2421527..2421538,2421542..2421544) /locus_tag="STM2314" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:381085" gene complement(2421684..2423476) /gene="yfbK" /locus_tag="STM2315" /db_xref="GeneID:1253837" CDS complement(2421684..2423465) /gene="yfbK" /locus_tag="STM2315" /note="similar to E. coli orf, hypothetical protein (AAC75330.1); Blastp hit to AAC75330.1 (575 aa), 45% identity in aa 22 - 190" /codon_start=1 /transl_table=11 /product="putative von Willebrand factor, vWF type A domain protein" /protein_id="NP_461257.1" /db_xref="GeneID:1253837" /translation="MLNGKTLMLLLGGVILSGCGPEPSDPQGNNPAELKQKRTIQKEN SAQAGDDTVQKRQAEAAQQAAKKAAEYAEAKALADAKAASLATAEAPQYVMQTRAAAP KAFAAQGGNVMGTARYEHYDENPIKQVSQAPLATFSLDVDTGSYANVRRFLNQGQLPP PEAVRVEEMLNYFPAPQPVADKQDNTKPIAACIPMPFAVKYELAPSPWNAQRTLLKVD VQARDMQTRDLPPANLVFLIDTSGSMQPAERLPLIRSALKLLVNDLRAQDNITIVTYA GGTHVALASTAGNNTTAIKAAIDNLDAYGSTGGEAGLRLAYEQAEKGFIKGGVNRILL TTDGDFNLGITDPKDIEALVKKEREKGITLSTLGVGDDNFNEAMMVRIADVGNGNYSY IDSLSEAQKVLKDEMHQTLVTVAKDVKSQIEFNPQWVTEYRQIGYEKRQLRDEDFNND KVDAGDIGAGKHVTLFFELTLNGQKASVDKLRYAQNKAASKTTKSSELAWLKLRWKAP QGSESTLAEFPVVMGKMPIFADASEDFRFRAAVAAFGQKLRGSETLADTTWPQIIKWG EQARGEDRQGYRAEFIKLVKLAEGLSH" misc_feature complement(2422125..2423099) /gene="yfbK" /locus_tag="STM2315" /note="Secreted protein containing bacterial Ig-like domain and vWFA domain [General function prediction only]; Region: YfbK; COG2304" /db_xref="CDD:441879" misc_feature complement(2421693..2422241) /gene="yfbK" /locus_tag="STM2315" /note="Domain of unknown function (DUF3520); Region: DUF3520; pfam12034" /db_xref="CDD:432277" regulatory complement(2423471..2423476) /regulatory_class="ribosome_binding_site" /gene="yfbK" /locus_tag="STM2315" /note="putative RBS for yfbK; RegulonDB:STMS1H002446" gene complement(2424353..2425638) /gene="nuoN" /locus_tag="STM2316" /db_xref="GeneID:1253838" CDS complement(2424353..2425630) /gene="nuoN" /locus_tag="STM2316" /EC_number="7.1.1.2" /note="similar to E. coli NADH dehydrogenase I chain N (AAC75336.1); Blastp hit to AAC75336.1 (425 aa), 95% identity in aa 1 - 425" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain N" /protein_id="NP_461258.3" /db_xref="GeneID:1253838" /translation="MDVTPLMRVDGFAMLYTGLVLLASLATCTFAYPWLEGYNDNQEE FYLLVLIASLGGILLANANHLAALFLGIELISLPLFGLIGYAFRQKRSLEASIKYTIL SAAASSFLLFGMALVYAQSGNLSFEALGKSLGDGMLHEPLLLAGFGLMIVGLGFKLSL VPFHLWTPDVYQGAPAPVSTFLATASKIAIFGVVMRLFLYAPVGDSEAVRVVLGIIAF ASIIFGNLMALSQTNIKRLLGYSSISHLGYLLVALIALQSGEMSMEAVGVYLAGYLFS SLGAFGVVSLMSSPFRGPDADSLYSYRGLFWHRPVLAAVMTVMMLSLAGIPMTLGFIG KFYVLAVGVQASLWWLVAAVVVGSAIGLYYYLRVAVSLYLHAPQQPGRDAPTNWQYSA GGIVVLISALLVLVLGVWPQPLISLVQLAMPLM" misc_feature complement(2424362..2425630) /gene="nuoN" /locus_tag="STM2316" /note="NADH-quinone oxidoreductase subunit NuoN; Region: PRK05777" /db_xref="CDD:235603" regulatory complement(2425633..2425638) /regulatory_class="ribosome_binding_site" /gene="nuoN" /locus_tag="STM2316" /note="putative RBS for nuoN; RegulonDB:STMS1H002447" gene complement(2425817..2427363) /gene="nuoM" /locus_tag="STM2317" /db_xref="GeneID:1253839" CDS complement(2425817..2427346) /gene="nuoM" /locus_tag="STM2317" /EC_number="7.1.1.2" /note="similar to E. coli NADH dehydrogenase I chain M (AAC75337.1); Blastp hit to AAC75337.1 (509 aa), 96% identity in aa 1 - 509" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain M" /protein_id="NP_461259.1" /db_xref="GeneID:1253839" /translation="MLLPWLILIPFIGGFLCWQTERFGVKVPRWIALITMGLTLALGL QLWLQGGYSLTQSAGIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAV LCSWREIEKYQGFFHLNLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHK ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSHG VEYLLMLGFFIAFAVKMPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSL PLFPNASAEFAPIAMWLGVIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGS QLAYQGAVIQMIAHGLSAAGLFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFA VATLGMPGTGNFVGEFMILFGSYQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKS QIASVELPGMSLRELFIILLLVVLLVLLGFYPQPILDTSHSAMSNIQQWFVNSVTTTR P" misc_feature complement(2425820..2427346) /gene="nuoM" /locus_tag="STM2317" /note="NADH:ubiquinone oxidoreductase subunit M; Reviewed; Region: PRK05846" /db_xref="CDD:235622" regulatory complement(2427358..2427363) /regulatory_class="ribosome_binding_site" /gene="nuoM" /locus_tag="STM2317" /note="putative RBS for nuoM; RegulonDB:STMS1H002448" gene complement(2427660..2429512) /gene="nuoL" /locus_tag="STM2318" /db_xref="GeneID:1253840" CDS complement(2427660..2429501) /gene="nuoL" /locus_tag="STM2318" /EC_number="7.1.1.2" /note="similar to E. coli NADH dehydrogenase I chain L (AAC75338.1); Blastp hit to AAC75338.1 (613 aa), 94% identity in aa 1 - 613" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain L" /protein_id="NP_461260.1" /db_xref="GeneID:1253840" /translation="MNMLALTIILPLIGFVLLAFSRGRWSENLSATIGVGSVGLAALV TAFVGMDFFANGKQAFSQPLWTWMSVGNFNIGFNLVLDGLSLTMLSVVTGVGFLIHMF ASWYMRGEEGYSRFFAYTNLFIASMVVLVLSDNLLLMYLGWEGVGLCSYLLIGFYYSD PKNGAAAMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLMWA TLMLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT PEILHLVGIIGAITLVMAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFH LMTHAFFKALLFLASGSVILACHHEQNIFKMGGLRKSIPLVYACFLVGGAALSALPLV TAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFHGKEQIHAHAGKG ITHHLPLIVLMILSTFVGALIVPPLQGVLPQTTELAHGRVMTLEITSGVVAIAGILIA AWLWLGKRTLVTSIANSAPGRLLGTWWYNAWGFDWLYDKVFVKPFLGIAWLLKRDPLN ALMNIPAILSRFAGKGLVLSENGYLRWYVASMSIGAVVVLALLMVLR" misc_feature complement(2427699..2429501) /gene="nuoL" /locus_tag="STM2318" /note="NADH:ubiquinone oxidoreductase subunit L; Reviewed; Region: PRK06590" /db_xref="CDD:235836" gene complement(2429498..2429811) /gene="nuoK" /locus_tag="STM2319" /db_xref="GeneID:1253841" CDS complement(2429498..2429800) /gene="nuoK" /locus_tag="STM2319" /EC_number="7.1.1.2" /note="similar to E. coli NADH dehydrogenase I chain K (AAC75339.1); Blastp hit to AAC75339.1 (100 aa), 99% identity in aa 1 - 100" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain K" /protein_id="NP_461261.1" /db_xref="GeneID:1253841" /translation="MIPLTHGLILAAILFVLGLTGLVIRRNLLFMLIGLEIMINASAL AFVVAGSYWGQTDGQVMYILAISLAAAEASIGLALLLQLHRRRQNLNIDSVSEMRG" misc_feature complement(2429501..2429800) /gene="nuoK" /locus_tag="STM2319" /note="NADH-quinone oxidoreductase subunit NuoK; Region: PRK05715" /db_xref="CDD:180218" regulatory complement(2429507..2429512) /regulatory_class="ribosome_binding_site" /gene="nuoK" /locus_tag="STM2319" /note="putative RBS for nuoL; RegulonDB:STMS1H002449" gene complement(2429797..2430363) /gene="nuoJ" /locus_tag="STM2320" /db_xref="GeneID:1253842" CDS complement(2429797..2430351) /gene="nuoJ" /locus_tag="STM2320" /EC_number="7.1.1.2" /note="similar to E. coli NADH dehydrogenase I chain J (AAC75340.1); Blastp hit to AAC75340.1 (184 aa), 96% identity in aa 1 - 184" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain J" /protein_id="NP_461262.1" /db_xref="GeneID:1253842" /translation="MEFAFYICGLIAILATLRVITHTNPVHALLYLVISLLAISGVFF SLGAYFAGALEIIVYAGAIMVLFVFVVMMLNLGGSEIEQERQWLKPQVWIGPAVLSAI MLAVIVYAILGVNDQGIDGTPISAKAVGITLFGPYVLAVELASMLLLAGLVVAFHVGR EERAGEVLSNRADDRAKRKTEERA" misc_feature complement(2429803..2430351) /gene="nuoJ" /locus_tag="STM2320" /note="NADH-quinone oxidoreductase subunit J; Region: PRK06638" /db_xref="CDD:235844" regulatory complement(2429806..2429811) /regulatory_class="ribosome_binding_site" /gene="nuoK" /locus_tag="STM2319" /note="putative RBS for nuoK; RegulonDB:STMS1H002450" regulatory complement(2430358..2430363) /regulatory_class="ribosome_binding_site" /gene="nuoJ" /locus_tag="STM2320" /note="putative RBS for nuoJ; RegulonDB:STMS1H002451" gene complement(2430362..2430920) /gene="nuoI" /locus_tag="STM2321" /db_xref="GeneID:1253843" CDS complement(2430362..2430904) /gene="nuoI" /locus_tag="STM2321" /EC_number="7.1.1.2" /note="similar to E. coli NADH dehydrogenase I chain I (AAC75341.1); Blastp hit to AAC75341.1 (180 aa), 99% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain I" /protein_id="NP_461263.1" /db_xref="GeneID:1253843" /translation="MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRY RGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAETKDGRWYPEFFRINFSRCIFC GLCEEACPTTAIQLTPDFELGEYKRQDLVYEKEDLLISGPGKYPEYNFYRMAGMAIDG KDKGEAENEAKPIDVKSLLP" misc_feature complement(2430452..2430904) /gene="nuoI" /locus_tag="STM2321" /note="NADH-quinone oxidoreductase subunit NuoI; Region: PRK05888" /db_xref="CDD:235637" regulatory complement(2430915..2430920) /regulatory_class="ribosome_binding_site" /gene="nuoI" /locus_tag="STM2321" /note="putative RBS for nuoI; RegulonDB:STMS1H002452" gene complement(2430919..2431907) /gene="nuoH" /locus_tag="STM2322" /db_xref="GeneID:1253844" CDS complement(2430919..2431896) /gene="nuoH" /locus_tag="STM2322" /EC_number="7.1.1.2" /note="nadh dehydrogenase I chain H. (SW:NUOH_SALTY)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain H" /protein_id="NP_461264.1" /db_xref="GeneID:1253844" /translation="MSWITPDLIEILLSILKAVVILLVVVTCGAFMSFGERRLLGLFQ NRYGPNRVGWGGSLQLVADMIKMFFKEDWIPKFSDRVIFTLAPMIAFTSLLLSFAIVP VSPNWVVADLNIGILFFLMMAGLAVYAVLFAGWSSNNKYSLLGAMRASAQTVSYEVFL GLSLMGVVAQAGSFNMTDIVNNQAHLWNVIPQFFGFVTFAIAGVAVCHRHPFDQPEAE QELADGYHIEYSGMKFGLFFVGEYIGIVTVSALMVTLFFGGWHGPFLPPFVWFALKTA FFMMMFILIRASLPRPRYDQVMSFGWKVCLPLTLINLLVTAAVILWQAQ" misc_feature complement(2430940..2431896) /gene="nuoH" /locus_tag="STM2322" /note="NADH-quinone oxidoreductase subunit NuoH; Region: PRK06076" /db_xref="CDD:235692" gene complement(2431893..2434633) /gene="nuoG" /locus_tag="STM2323" /db_xref="GeneID:1253845" CDS complement(2431893..2434625) /gene="nuoG" /locus_tag="STM2323" /EC_number="7.1.1.2" /note="nadh dehydrogenase I chain G. (SW:NUOG_SALTY)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain G" /protein_id="NP_461265.3" /db_xref="GeneID:1253845" /translation="MLMATIHVDGKEYEVNGADNLLQACLSLGLDIPYFCWHPALGSV GACRQCAVKQYQNAEDTRGRLVMSCMTPATDGTFISIDDEEAKQFRESVVEWLMTNHP HDCPVCEEGGNCHLQDMTVMTGHSFRRYRFTKRTHRNQDLGPFISHEMNRCIACYRCV RYYKDYADGTDLGVYGAHDNVYFGRPEDGTLESEFSGNLVEICPTGVFTDKTHSERYN RKWDMQFAPSICQQCSIGCNISPGERYGELRRIENRYNGTVNHYFLCDRGRFGYGYVN LKDRPRQPVQRRGDDFITLNAEQAMQGAADILRQSKKVIGIGSPRASIESNFALRELV GAENFYTGIARGEQERLQLALKVLREGGIYTPALREIESYDAVLVLGEDVTQTGARVA LAVRQAVKGKAREMAAAQKVADWQIAAILNIGQRAKHPLFVTNVDDTRLDDIAAWTYR APVEDQARLGFAIAHALDNTAPAVDGIDSDLQNKIDVIVQALAGAKKPLIISGTNAGS SEVIQAAANVAKALKGRGADVGITMIARSVNSMGLGMMGGGSLDDALGELETGSADAV VVLENDLHRHASATRVNAALAKAPLVMVVDHQRTAIMENAHLVLSAASFAESDGTVIN NEGRAQRFFQVYDPAYYDNKTIMLESWRWLHSLHSTVENREVDWTQLDHVIDAVIAAM PQFAGIKDAAPDATFRIRGQKLAREPHRYSGRTAMRANISVHEPRQPQDKDTMFAFSM EGNNQPTAPRSEIPFAWAPGWNSPQAWNKFQDEVGGKLRHGDPGVRLIEATEGGLDYF TTVPASFQAQDGQWRIAPYYHLFGSDELSQRSPVFQSRMPQPYIKLNPADAAKLGVNA GTRVSFSYDGNTVTLPVEISEGLAAGQVGLPMGMPGIAPVLAGARLEDLREAQQ" misc_feature complement(2432655..2434610) /gene="nuoG" /locus_tag="STM2323" /note="NADH-quinone oxidoreductase, chain G; Region: NuoG; TIGR01973" /db_xref="CDD:273904" misc_feature complement(2431941..2432192) /gene="nuoG" /locus_tag="STM2323" /note="C-terminal region of the NuoG-like subunit (of the variant with a [4Fe-4S] cluster, N7) of the NADH-quinone oxidoreductase/NADH dehydrogenase-1 (NDH-1) found in various bacteria. The NDH-1 is the first energy-transducting complex in the respiratory chain...; Region: MopB_CT_NDH-1_NuoG2-N7; cd02788" /db_xref="CDD:239189" regulatory complement(2431902..2431907) /regulatory_class="ribosome_binding_site" /gene="nuoH" /locus_tag="STM2322" /note="putative RBS for nuoH; RegulonDB:STMS1H002453" regulatory complement(2434628..2434633) /regulatory_class="ribosome_binding_site" /gene="nuoG" /locus_tag="STM2323" /note="putative RBS for nuoG; RegulonDB:STMS1H002454" gene complement(2434650..2436001) /gene="nuoF" /locus_tag="STM2324" /db_xref="GeneID:1253846" CDS complement(2434650..2435987) /gene="nuoF" /locus_tag="STM2324" /EC_number="7.1.1.2" /note="nadh dehydrogenase I chain F. (SW:NUOF_SALTY)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain F" /protein_id="NP_461266.1" /db_xref="GeneID:1253846" /translation="MKNVIRTPETHPLTWRLRDDKQPVWLDEYRSKNGYEGARKALTG LSPDEIVSQVKDAGLKGRGGAGFSTGLKWSLMPKDESMNIRYLLCNADEMEPGTYKDR LLMEQLPHLLVEGMLISAFALKAYRGYIFLRGEYIEAAVHLRRAIAEATEAGLLGKNI MGTGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPATSGVWGKPTCVNN VETLCNVPAILANGVEWYQNISKSKDAGTKLMGFSGRVKNPGLWELPFGTTAREILED YAGGMRDGLKFKAWQPGGAGTDFLTEAHLDLPMEFESIGKAGSRLGTALAMAVDHEIG MVSLVRNLEEFFARESCGWCTPCRDGLPWSVKILRALERGEGQPGDIETLEQLCRFLG PGKTFCAHAPGAVEPLQSAIKYFREEFEAGIKQPFSNTHLINGIQPNLLKERW" misc_feature complement(2434653..2435987) /gene="nuoF" /locus_tag="STM2324" /note="NADH-quinone oxidoreductase subunit NuoF; Region: PRK11278" /db_xref="CDD:236891" gene complement(2435984..2436498) /gene="nuoE" /locus_tag="STM2325" /db_xref="GeneID:1253847" CDS complement(2435984..2436484) /gene="nuoE" /locus_tag="STM2325" /EC_number="7.1.1.2" /note="nadh dehydrogenaseI i chain E. (SW:NUOE_SALTY)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain E" /protein_id="NP_461267.1" /db_xref="GeneID:1253847" /translation="MHENQQPQTEAFELSAAEREAIEHEKHHYEDPRAASIEALKIVQ KQRGWVPDGAIYAIADVLGIPASDVEGVATFYSQIFRQPVGRHVIRYCDSVVCHITGY QGIQAALEKNLNIKPGQTTFDGRFTLLPTCCLGNCDKGPNMMIDEDTHSHLTPEAIPE LLERYK" misc_feature complement(2435987..2436445) /gene="nuoE" /locus_tag="STM2325" /note="NADH-quinone oxidoreductase subunit NuoE; Region: PRK07539" /db_xref="CDD:181024" misc_feature complement(order(2436089..2436097,2436215..2436217, 2436221..2436223)) /gene="nuoE" /locus_tag="STM2325" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:239362" misc_feature complement(order(2436074..2436076,2436086..2436088, 2436194..2436196,2436209..2436211)) /gene="nuoE" /locus_tag="STM2325" /note="[2Fe-2S] cluster binding site [ion binding]; other site" /db_xref="CDD:239362" regulatory complement(2435996..2436001) /regulatory_class="ribosome_binding_site" /gene="nuoE" /locus_tag="STM2325" /note="putative RBS for nuoF; RegulonDB:STMS1H002455" gene complement(2436487..2438303) /gene="nuoC" /locus_tag="STM2326" /db_xref="GeneID:1253848" CDS complement(2436487..2438289) /gene="nuoC" /locus_tag="STM2326" /EC_number="7.1.1.2" /note="nadh dehydrogenase I chain C/D. (SW:NUCD_SALTY)" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain C,D" /protein_id="NP_461268.1" /db_xref="GeneID:1253848" /translation="MVNNMTDLTAQDAAWSTRDHLDDPVIGELRNRFGPDAFTVQATR TGIPVVWVKREQLLEVGDFLKKLPKPYVMLFDLHGMDERLRTHRDGLPAADFSVFYHL ISIERNRDIMLKVALSENDLRVPTFTKLFPNANWYERETWEMFGIDIEGHPHLTRIMM PQTWEGHPLRKDYPARATEFDPFELTKAKQDLEMEALTFKPEDWGMKRGTDNEDFMFL NLGPNHPSAHGAFRIILQLDGEEIVDCVPDIGYHHRGAEKMGERQSWHSYIPYTDRIE YLGGCVNEMPYVLAVEKLAGITVPDRVNVIRVMLSELFRINSHLLYISTFIQDVGAMT PVFFAFTDRQKIYDLVEAITGFRMHPAWFRIGGVAHDLPRGWDRLLREFLEWMPKRLD SYEKAALRNTILKGRSQGVAAYGAKEALEWGTTGAGLRATGIDFDVRKWRPYSGYENF DFEVPVGGGVSDCYTRVMLKVEELRQSLRILQQCLDNMPEGPFKADHPLTTPPPKERT LQHIETLITHFLQVSWGPVMPAQESFQMVEATKGINSYYLTSDGSTMSYRTRVRTPSF AHLQQIPSAIRGSLVSDLIVYLGSIDFVMSDVDR" misc_feature complement(2436490..2438217) /gene="nuoC" /locus_tag="STM2326" /note="bifunctional NADH:ubiquinone oxidoreductase subunit C/D; Provisional; Region: PRK11742" /db_xref="CDD:236965" regulatory complement(2436493..2436498) /regulatory_class="ribosome_binding_site" /gene="nuoE" /locus_tag="STM2325" /note="putative RBS for nuoE; RegulonDB:STMS1H002456" regulatory complement(2438298..2438303) /regulatory_class="ribosome_binding_site" /gene="nuoC" /locus_tag="STM2326" /note="putative RBS for nuoC; RegulonDB:STMS1H002457" gene complement(2438376..2439049) /gene="nuoB" /locus_tag="STM2327" /db_xref="GeneID:1253849" CDS complement(2438376..2439038) /gene="nuoB" /locus_tag="STM2327" /EC_number="7.1.1.2" /note="similar to E. coli NADH dehydrogenase I chain B (AAC75347.1); Blastp hit to AAC75347.1 (220 aa), 99% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain B" /protein_id="NP_461269.1" /db_xref="GeneID:1253849" /translation="MDYTLTRIDPNGENDRYPLQKQEIVTDPLEQEVNKNVFMGKLHD MVNWGRKNSIWPYNFGLSCCYVEMVTSFTAVHDVARFGAEVLRASPRQADLMVVAGTC FTKMAPVIQRLYDQMLEPKWVISMGACANSGGMYDIYSVVQGVDKFIPVDVYIPGCPP RPEAYMQALMLLQESIGKERRPLSWVVGDQGVYRANMQPERERKRGERIAVTNLRTPD EI" misc_feature complement(2438379..2438987) /gene="nuoB" /locus_tag="STM2327" /note="NADH-quinone oxidoreductase subunit NuoB; Region: PRK06411" /db_xref="CDD:235797" regulatory complement(2439044..2439049) /regulatory_class="ribosome_binding_site" /gene="nuoB" /locus_tag="STM2327" /note="putative RBS for nuoB; RegulonDB:STMS1H002458" gene complement(2439054..2439694) /gene="nuoA" /locus_tag="STM2328" /db_xref="GeneID:1253850" CDS complement(2439054..2439497) /gene="nuoA" /locus_tag="STM2328" /EC_number="7.1.1.2" /note="similar to E. coli NADH dehydrogenase I chain A (AAC75348.1); Blastp hit to AAC75348.1 (147 aa), 97% identity in aa 1 - 147" /codon_start=1 /transl_table=11 /product="NADH dehydrogenase I chain A" /protein_id="NP_461270.1" /db_xref="GeneID:1253850" /translation="MSMSTSTEVIAHHWAFAIFLIVAIGLCCLMLVGGWFLGGRARAR HKNVPFESGIDSVGTARLRLSAKFYLVAMFFVIFDVEALYLFAWSTSIRESGWVGFVE AAIFIFVLLAGLVYLARIGALDWTPARSRRERMNPETNSIANRQR" misc_feature complement(2439120..2439482) /gene="nuoA" /locus_tag="STM2328" /note="NADH:ubiquinone oxidoreductase subunit A; Validated; Region: PRK06602" /db_xref="CDD:180638" protein_bind complement(2439613..2439635) /gene="nuoA" /locus_tag="STM2328" /note="putative binding site for FNR, RegulonDB: STMS1H000176" /bound_moiety="FNR" regulatory complement(2439667..2439675) /regulatory_class="minus_10_signal" /gene="nuoA" /locus_tag="STM2328" /note="putative -10_signal for nuoA; RegulonDB:STMLTH004538" protein_bind complement(2439683..2439709) /note="putative binding site for IHF, RegulonDB: STMS1H000217" /bound_moiety="IHF" regulatory complement(2439686..2439694) /regulatory_class="minus_35_signal" /gene="nuoA" /locus_tag="STM2328" /note="putative -35_signal for nuoA; RegulonDB:STMLTH004538" protein_bind complement(2439695..2439715) /note="putative binding site for NarL, RegulonDB: STMS1H000313" /bound_moiety="NarL" protein_bind complement(2439800..2439811) /note="putative binding site for ArcA, RegulonDB: STMS1H000018" /bound_moiety="ArcA" gene complement(2439892..2440048) /locus_tag="STM2329" /db_xref="GeneID:1253851" CDS complement(2439892..2440044) /locus_tag="STM2329" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461271.1" /db_xref="GeneID:1253851" /translation="MPICTRLTAQIVKVAVNQPVAIRSSMWAKNNQNIHFMNLHVKKL EKLLLF" regulatory complement(2440043..2440048) /regulatory_class="ribosome_binding_site" /locus_tag="STM2329" /note="putative RBS for STM2329; RegulonDB:STMS1H002459" gene complement(2440124..2441072) /gene="lrhA" /locus_tag="STM2330" /db_xref="GeneID:1253852" CDS complement(2440124..2441062) /gene="lrhA" /locus_tag="STM2330" /note="similar to E. coli NADH dehydrogenase transcriptional regulator, LysR family (AAC75349.1); Blastp hit to AAC75349.1 (312 aa), 86% identity in aa 1 - 312" /codon_start=1 /transl_table=11 /product="LysR family NADH dehydrogenase transcriptional repressor" /protein_id="NP_461272.1" /db_xref="GeneID:1253852" /translation="MINANRPIINLDLDLLRTFVAVADLNTFAAAAAAVCRTQSAVSQ QMQRLEQLVGKELFARHGRNKLLTEHGIQLLGYARKILRFNDEACSSLMFSNLQGVLT IGASDESADTILPFLLSRISSVYPKLALDVRVKRNAYMVDMVKSQEVDLVVTTNQPHS LDCLNLRTSPTHWYCAAEYVLQRGEPVPLVLLDDPSPFRDMVLETLNAAGIPWRLAYV ASTLPAVRAAVKAGLGVTARPVEMMSPDLRVLGAADGLPPLPDTEYLLCRDPNSQNEL AMVIFHAMESYQNPWHYNQFSAEGGDDPLMVEGGFE" misc_feature complement(2440136..2441062) /gene="lrhA" /locus_tag="STM2330" /note="DNA-binding transcriptional repressor LrhA; Provisional; Region: PRK15092" /db_xref="CDD:237907" regulatory complement(2441067..2441072) /regulatory_class="ribosome_binding_site" /gene="lrhA" /locus_tag="STM2330" /note="putative RBS for lrhA; RegulonDB:STMS1H002460" gene 2441981..2443208 /gene="yfbQ" /locus_tag="STM2331" /db_xref="GeneID:1253853" regulatory 2441981..2441986 /regulatory_class="ribosome_binding_site" /gene="yfbQ" /locus_tag="STM2331" /note="putative RBS for yfbQ; RegulonDB:STMS1H002461" CDS 2441994..2443208 /gene="yfbQ" /locus_tag="STM2331" /EC_number="2.6.1.1" /note="putative regulator; similar to E. coli putative aminotransferase (AAC75350.1); Blastp hit to AAC75350.1 (405 aa), 96% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="putative aminotransferase (ortho)" /protein_id="NP_461273.1" /db_xref="GeneID:1253853" /translation="MSPIEKSSKLENVCYDIRGPVLKEAKRLEEEGNKVLKLNIGNPA PFGFEAPDEILVDVIRNLPTAQGYCDSKGLYSARKAIMQHYQARGMRDVTVEDIYIGN GVSELIVQAMQALLNSGDEMLVPAPDYPLWTAAVSLSSGKAVHYLCDESSDWFPDLDD IRAKITPRTRGIVIINPNNPTGAVYSKELLMEIVNIAREHNLIIFADEIYDKILYDDA EHHSIAALAPDLLTITFNGLSKTYRVAGFRQGWMVLNGPKKHAKGYIEGLEMLASMRL CANVPAQHAIQTALGGYQSISEFILPGGRLYEQRNRAWELINDIPGVSCVKPRGALYM FPRIDAKRFNIHDDQKMVLDFLLQEKVLLVQGTAFNWPWPDHFRIVTLPREDDLEMAI NRFGRFLSGYHQ" misc_feature 2441994..2443205 /gene="yfbQ" /locus_tag="STM2331" /note="aminotransferase AlaT; Validated; Region: PRK09265" /db_xref="CDD:181738" gene 2443292..2443901 /locus_tag="STM2332" /db_xref="GeneID:1253854" regulatory 2443292..2443297 /regulatory_class="ribosome_binding_site" /locus_tag="STM2332" /note="putative RBS for STM2332; RegulonDB:STMS1H002462" CDS 2443302..2443901 /locus_tag="STM2332" /note="similar to E. coli putative alpha helix protein (AAC75351.1); Blastp hit to AAC75351.1 (199 aa), 91% identity in aa 1 - 199" /codon_start=1 /transl_table=11 /product="putative hydrolase of HD superfamily" /protein_id="NP_461274.1" /db_xref="GeneID:1253854" /translation="MKQSHFFAHLSRMKLINRWPLMRNVRTENVSEHSLQVAMVAHAL AAIKNRKFGGQLNAERIALLAMYHDASEVLTGDLPTPVKYFNSQIAQEYKAIEKIAQQ KLVDMAPDELRDIFAPLIDENAWSEEEQAIVKQADALCAYLKCLEELSAGNNEFGLAK TRLEKTLELRRSQEMDYFMAVFVPSFHLSLDEISQDSPL" misc_feature 2443305..2443889 /locus_tag="STM2332" /note="5'-nucleotidase; Provisional; Region: PRK03826" /db_xref="CDD:235165" gene complement(2443993..2445830) /gene="yfbS" /locus_tag="STM2333" /db_xref="GeneID:1253855" CDS complement(2443993..2445819) /gene="yfbS" /locus_tag="STM2333" /note="similar to E. coli putative transport protein (AAC75352.1); Blastp hit to AAC75352.1 (610 aa), 90% identity in aa 1 - 610" /codon_start=1 /transl_table=11 /product="putative response regulator" /protein_id="NP_461275.1" /db_xref="GeneID:1253855" /translation="MNGELIWVLSLLAIAVVLFATGKVRMDAVALFVIVAFVLSGTLT LPEAFSGFSDPNVILIAALFIIGDGLVRTGVATVVGTWLVKMAGSSEIKMLVLLMITV AGLGAFMSSTGVVAIFIPVVLSVSMHMQTSPSRLMMPLSFAGLISGMMTLVATPPNLV VNSELLREGLHGFNFFSVTPLGVVVLALGIVYMLVMRFMLKGDAPGQQAGKRRTFRDL IREYRLTGRARRLAIRPGSPMVGQRLDDLKLRERYGANVIGVERWRRFRRVIVNVNGV SEFRARDVLLIDMSAAEVDLREFCAEQLLEPMVLRGEYFSDQALDVGMAEISLIPESE LIGKSVREIAFRTRYGLNVVGLKRDGVALEGSLADEPLLMGDIILVVGNWKLISLLGQ KGRDFVVLNMPVEVSEASPAHSQAPHAIFCLVLMVALMLTDEIPNPIAAIIACLLMGK FRCIDAESAYKAIHWPSIILIVGMMPFALALQKTGGVSLVVQGLMDIGGGYGPYMMLG CLFVLCAVIGLFISNTATAVLMAPIALAAAKSMGVSPYPFAMAVAMAASAAFMTPVSS PVNTLVLGPGNYSFSDFVKLGVPFTLIVMAVCIVMIPMLFPF" misc_feature complement(2443996..2445639) /gene="yfbS" /locus_tag="STM2333" /note="Di- and tricarboxylate antiporter [Carbohydrate transport and metabolism]; Region: CitT; COG0471" /db_xref="CDD:440239" misc_feature complement(2444959..2445345) /gene="yfbS" /locus_tag="STM2333" /note="K+/H+ antiporter KhtSTU, c-di-AMP-binding regulatory subunit KhtT, contains RCK_C (TrkA_C) domain [Inorganic ion transport and metabolism, Signal transduction mechanisms]; Region: KhtT; COG0490" /db_xref="CDD:440256" misc_feature complement(2444659..>2444919) /gene="yfbS" /locus_tag="STM2333" /note="K+/H+ antiporter KhtSTU, c-di-AMP-binding regulatory subunit KhtT, contains RCK_C (TrkA_C) domain [Inorganic ion transport and metabolism, Signal transduction mechanisms]; Region: KhtT; COG0490" /db_xref="CDD:440256" regulatory complement(2445825..2445830) /regulatory_class="ribosome_binding_site" /gene="yfbS" /locus_tag="STM2333" /note="putative RBS for yfbS; RegulonDB:STMS1H002463" gene complement(2445896..2446573) /gene="yfbT" /locus_tag="STM2334" /db_xref="GeneID:1253856" CDS complement(2445896..2446573) /gene="yfbT" /locus_tag="STM2334" /note="similar to E. coli putative phosphatase (AAC75353.1); Blastp hit to AAC75353.1 (222 aa), 86% identity in aa 1 - 221" /codon_start=1 /transl_table=11 /product="putative phosphatase" /protein_id="NP_461276.3" /db_xref="GeneID:1253856" /translation="MPEEARVQCKGFLFDLDGTLVDSLPAVERAWCSWADRFNLAHDE VLGFIHGKQAITSLRHFMAGKSEAEIAAEFTRLEQIEATETAGITALPGAVDLLNHLN KVGIPWAIVTSGSMPVARARHQVAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLLGLA PQECVVVEDAPAGVLSGLAAGCHVIAVNAPADTPRLADVDFALDSLTQLSVAKQPNGD VVVLRKT" misc_feature complement(2445902..2446555) /gene="yfbT" /locus_tag="STM2334" /note="putative phosphatase; Provisional; Region: PRK11587" /db_xref="CDD:183215" gene complement(2446566..2447072) /gene="yfbU" /locus_tag="STM2335" /db_xref="GeneID:1253857" CDS complement(2446566..2447060) /gene="yfbU" /locus_tag="STM2335" /note="similar to E. coli orf, hypothetical protein (AAC75354.1); Blastp hit to AAC75354.1 (170 aa), 95% identity in aa 7 - 170" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461277.1" /db_xref="GeneID:1253857" /translation="MEMTNAQRLILSNQYKMMTMLDPTNAERYRRLQTIIERGYGLQM RELDREFGELTEETCRTIIDIMEMYHALHVSWTNLKDTQAIDERRVTFLGFDAATEAR YLGYVRFMVNIEGRYTHFDAGTHGFNAQTPMWEKYQRMLNVWHACPRQYHLSANEINQ IINA" misc_feature complement(2446569..2447060) /gene="yfbU" /locus_tag="STM2335" /note="YfbU family protein; Region: PRK05445" /db_xref="CDD:180087" regulatory complement(2447067..2447072) /regulatory_class="ribosome_binding_site" /gene="yfbU" /locus_tag="STM2335" /note="putative RBS for yfbU; RegulonDB:STMS1H002464" gene complement(2447143..2447608) /locus_tag="STM2336" /db_xref="GeneID:1253858" CDS complement(2447143..2447598) /locus_tag="STM2336" /note="similar to E. coli orf, hypothetical protein (AAC75355.1); Blastp hit to AAC75355.1 (151 aa), 95% identity in aa 1 - 151" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461278.1" /db_xref="GeneID:1253858" /translation="MSTPDNRSVNFFSLFRRGQHYAKTWPMEKRLAPVFVENRVIRMT RYAIRFMPPVAVFTLCWQIALGGQLGPAVATALFALSLPMQGLWWLGKRSVTPLPPSI LNWFYEVRGKLQEAGQALAPVEGKPDYQALADTLKRAFKQLDKTFLDDL" misc_feature complement(2447146..2447574) /locus_tag="STM2336" /note="hypothetical protein; Provisional; Region: PRK01816" /db_xref="CDD:179338" regulatory complement(2447603..2447608) /regulatory_class="ribosome_binding_site" /locus_tag="STM2336" /note="putative RBS for STM2336; RegulonDB:STMS1H002465" gene 2447927..2449140 /gene="ackA" /locus_tag="STM2337" /db_xref="GeneID:1253859" regulatory 2447927..2447932 /regulatory_class="ribosome_binding_site" /gene="ackA" /locus_tag="STM2337" /note="putative RBS for ackA; RegulonDB:STMS1H002466" CDS 2447938..2449140 /gene="ackA" /locus_tag="STM2337" /EC_number="2.7.2.1" /note="propionate kinase 2; similar to E. coli acetate kinase (AAC75356.1); Blastp hit to AAC75356.1 (400 aa), 97% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="acetate kinase A" /protein_id="NP_461279.1" /db_xref="GeneID:1253859" /translation="MSSKLVLVLNCGSSSLKFAIIDAVNGDEYLSGLAECFHLPEARI KWKMDGSKQEAALGAGAAHSEALNFIVNTILAQKPELSAQLTAIGHRIVHGGEKYTSS VVIDESVIQGIKDSASFAPLHNPAHLIGIAEALKSFPQLKDKNVAVFDTAFHQTMPEE SYLYALPYSLYKEHGVRRYGAHGTSHFYVTQEAAKMLNKPVEELNIITCHLGNGGSVS AIRNGKCVDTSMGLTPLEGLVMGTRSGDIDPAIIFHLHDTLGMSVDQINKMLTKESGL LGLTEVTSDCRYVEDNYATKEDAKRAMDVYCHRLAKYIGSYTALMDGRLDAVVFTGGI GENAAMVRELSLGKLGVLGFEVDHERNLAARFGKSGFINKEGTRPAVVIPTNEELVIA QDASRLTA" misc_feature 2447947..2449134 /gene="ackA" /locus_tag="STM2337" /note="acetate kinase A/propionate kinase 2; Reviewed; Region: PRK00180" /db_xref="CDD:234680" gene 2449206..2451361 /gene="pta" /locus_tag="STM2338" /db_xref="GeneID:1253860" regulatory 2449206..2449211 /regulatory_class="ribosome_binding_site" /gene="pta" /locus_tag="STM2338" /note="putative RBS for pta; RegulonDB:STMS1H002467" CDS 2449217..2451361 /gene="pta" /locus_tag="STM2338" /EC_number="2.3.1.8" /note="similar to E. coli phosphotransacetylase (AAC75357.1); Blastp hit to AAC75357.1 (714 aa), 96% identity in aa 1 - 714" /codon_start=1 /transl_table=11 /product="phosphotransacetylase" /protein_id="NP_461280.1" /db_xref="GeneID:1253860" /translation="MSRIIMLIPTGTSVGLTSVSLGVIRAMERKGVRLSVFKPIAQPR AGGDAPDQTTTIVRANSTLPAAEPLKMSHVESLLSSNQKDVLMEEIIANYHANTKDAE VVLVEGLVPTRKHQFAQSLNYEIAKTLNAEIVFVMSQGTDTPEQLNERIELTRSSFGG AKNTNITGVIINKLNAPVDEQGRTRPDLSEIFDDSSKAQVIKIDPAKLQESSPLPVLG AVPWSFDLIATRAIDMARHLNATIINEGDIKTRRVKSVTFCARSIPHMLEHFRAGSLL VTSADRPDVLVAACLAAMNGVEIGALLLTGGYEMDARISKLCERAFATGLPVFMVNTN TWQTSLSLQSFNLEVPVDDHERIEKVQEYVANYVNAEWIESLTATSERSRRLSPPAFR YQLTELARKAGKRVVLPEGDEPRTVKAAAICAERGIATCVLLGNPDEINRVAASQGVE LGAGIEIVDPEVVRESYVARLVELRKSKGMTEPVAREQLEDNVVLGTLMLEQDEVDGL VSGAVHTTANTIRPPLQLIKTAPGSSLVSSVFFMLLPEQVYVYGDCAINPDPTAEQLA EIAIQSADSAIAFGIEPRVAMLSYSTGTSGAGSDVEKVREATRLAQEKRPDLMIDGPL QYDAAVMADVAKSKAPNSPVAGRATVFIFPDLNTGNTTYKAVQRSADLISIGPMLQGM RKPVNDLSRGALVDDIVYTIALTAIQASQQQQ" misc_feature 2449217..2451346 /gene="pta" /locus_tag="STM2338" /note="phosphate acetyltransferase; Reviewed; Region: PRK05632" /db_xref="CDD:235537" gene 2451564..2453099 /gene="yfcC" /locus_tag="STM2339" /db_xref="GeneID:1253861" regulatory 2451564..2451569 /regulatory_class="ribosome_binding_site" /gene="yfcC" /locus_tag="STM2339" /note="putative RBS for yfcC; RegulonDB:STMS1H002468" CDS 2451579..2453099 /gene="yfcC" /locus_tag="STM2339" /note="similar to E. coli putative S-transferase (AAC75358.1); Blastp hit to AAC75358.1 (513 aa), 91% identity in aa 8 - 513" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_461281.1" /db_xref="GeneID:1253861" /translation="MSVVTESKTARKWAMPDTLVIIFFVAILTSIATWVVPVGMFDSQ EVQYQVDGQTKTRKVVDPHSFRIVTNEAGEAQYHRVQFFTTGDERPGLMNFPFEGLTS GSKFGTAVGIIMFMLVIGGAFGIVMRTGTVDNGILALIRHTRGNEVLFIPVLFVLFSL GGAVFGMGEEAVAFAIIIAPLMVRLGYDSITTVLVTYIATQIGFASSWMNPFCVVVAQ GIAGVPVLSGSGLRIVVWIVATLIGLVFTLVYASRVKKNPLLSRVHESDRYFREQQDE VVQRPFTFGDWLVLLVLTGVMIWVVWGVIVHAWFIPEIASQFFTMGVVIGLIGVIFRL NGMTVNVMASSFTEGARMMIAPALLVGFAKGILLLVGNGEAGEPSVLNTLLNSIAHGI SGLNNAIAAWFMLLFQAVFNFFVTSGSGQAALTMPLLAPLGDLVGVNRQVTVLAFQFG DGFSHIIYPTSASLMATLGVCRVDFRNWLKVGASLLGLLFIMSSVVVIGAQMMGYH" misc_feature 2451579..2453096 /gene="yfcC" /locus_tag="STM2339" /note="putative basic amino acid antiporter YfcC; Region: PRK11588" /db_xref="CDD:236934" gene complement(2453148..2454108) /locus_tag="STM2340" /db_xref="GeneID:1253862" CDS complement(2453148..2454101) /locus_tag="STM2340" /EC_number="2.2.1.1" /note="similar to E. coli 1-deoxyxylulose-5-phosphate synthase; flavoprotein (AAC73523.1); Blastp hit to AAC73523.1 (620 aa), 26% identity in aa 323 - 619" /codon_start=1 /transl_table=11 /product="putative transketolase" /protein_id="NP_461282.1" /db_xref="GeneID:1253862" /translation="MIKLAPAGLKDDIEMRKVYAGFIAGQIEAGSPIIALEADLMSSM AMDSVARDYPQHVINCGIMEANVIGTAAGLALTGRKPFVHTFTAFASRRCFDQLFMAL DYQRNNVKVIASDAGVTACHNGGTHMSFEDMGIVRGLAHSVVLEVTDAVMFADILRQL MDLDGFYWLRTIRKQARSIYAPGSTFTIGKGNVLREGDDITLIANGIMVAEALEAARQ LEQEGVSAAVIDMFTLKPIDRMLVKNYAEKTRRIVTCENHSIHNGLGSAVAEVLVENC PVPMRRVGVKERYGQVGTQDFLQKEYGLTAEAIVEAAKSLL" misc_feature complement(2453151..2454065) /locus_tag="STM2340" /note="Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]; Region: TktA2; COG3958" /db_xref="CDD:443158" gene complement(2454094..2454930) /locus_tag="STM2341" /db_xref="GeneID:1253863" CDS complement(2454094..2454924) /locus_tag="STM2341" /EC_number="2.2.1.1" /note="similar to E. coli transketolase 1 isozyme (AAC75972.1); Blastp hit to AAC75972.1 (663 aa), 33% identity in aa 6 - 267" /codon_start=1 /transl_table=11 /product="putative transketolase" /protein_id="NP_461283.1" /db_xref="GeneID:1253863" /translation="MNVTEITQLARDIRVATLKSLNHLGFGHYGGSMSVVETLAVLYG AVMKIDPADPDWPERDYFVLSKGHAGPALYSTLAIKGYFPREELNTLNQNGTRLPSHP DRLKTRGVDATTGSLGQGISIAGGMALSHKLARRPNRVFCIVGDGELNEGQCWEAFQF IAHHRLNNLTVFIDWNKQQLDGELEEIINPFDLEGKFRAFGFDVVTVKGDDIAGLLAV VQPVPPADAQPRVVILDSIKGQGVPCLEQLTNSHHLRLTDGMKQTLNEAIHQLEVMHD " misc_feature complement(2454109..2454924) /locus_tag="STM2341" /note="Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]; Region: TktA1; COG3959" /db_xref="CDD:443159" regulatory complement(2454103..2454108) /regulatory_class="ribosome_binding_site" /locus_tag="STM2341" /note="putative RBS for STM2340; RegulonDB:STMS1H002469" gene complement(2454921..2456319) /locus_tag="STM2342" /db_xref="GeneID:1253864" CDS complement(2454921..2456312) /locus_tag="STM2342" /note="similar to E. coli orf, hypothetical protein (AAC77150.1); Blastp hit to AAC77150.1 (484 aa), 27% identity in aa 30 - 483" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461284.3" /db_xref="GeneID:1253864" /translation="MFILETLNFVVDILKVPSVLVGLIALIGLVAQKKAFSDVVKGTI KTILGFIVLGGGATVLVGSLNPLGGMFEHAFNIQGIIPNNEAIVSIALEKYGASTALI MAFGMVANIVVARFTRLKYIFLTGHHTFYMACMIGVILTVAGFEGVGLVFTGSLILGL VMAFFPALAQRYMRRITGTDDIAFGHFGTLGYVLSGWIGSLCGKGSRSTEEMNLPKNL SFLRDSSISISLTMMIIYLIMAVSAGREYVEATFSGGQNYLVYAIIMAITFAAGVFII LQGVRLILAEIVPAFTGFSEKLVPNARPALDCPVVYPYAPNAVLIGFLFSFLGGLVGL FLLGQMKLVLILPGVVPHFFTGATAGVFGNATGGRRGAMIGAFANGLLITFLPVLLLP VLGAIGFANTTFSDADFGVIGILLGNLARYLSPMAITGLVVALFALLVAYNVLAKNKK ATAEVQENSGAKE" misc_feature complement(2454924..2456312) /locus_tag="STM2342" /note="PTS ascorbate transporter subunit IIC; Region: ulaA; PRK12996" /db_xref="CDD:171824" regulatory complement(2454925..2454930) /regulatory_class="ribosome_binding_site" /locus_tag="STM2341" /note="putative RBS for STM2341; RegulonDB:STMS1H002470" regulatory complement(2456314..2456319) /regulatory_class="ribosome_binding_site" /locus_tag="STM2342" /note="putative RBS for STM2342; RegulonDB:STMS1H002471" gene complement(2456333..2456611) /locus_tag="STM2343" /db_xref="GeneID:1253865" CDS complement(2456333..2456605) /locus_tag="STM2343" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461285.1" /db_xref="GeneID:1253865" /translation="MKIMAICGSGLGSSFMVEMNIKKVLKKLNIDAEVEHSDLSSATP GAADLFVMAKDIAASASVPESQLVVINNIIDINELETQLRAWFAKQ" misc_feature complement(2456345..2456602) /locus_tag="STM2343" /note="subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel...; Region: PTS_IIB_ascorbate; cd05563" /db_xref="CDD:99905" misc_feature complement(order(2456564..2456572,2456576..2456587)) /locus_tag="STM2343" /note="P-loop; other site" /db_xref="CDD:99905" misc_feature complement(order(2456564..2456569,2456576..2456581, 2456585..2456587)) /locus_tag="STM2343" /note="active site" /db_xref="CDD:99905" misc_feature complement(2456585..2456587) /locus_tag="STM2343" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99905" regulatory complement(2456606..2456611) /regulatory_class="ribosome_binding_site" /locus_tag="STM2343" /note="putative RBS for STM2343; RegulonDB:STMS1H002472" gene complement(2456686..2457135) /locus_tag="STM2344" /db_xref="GeneID:1253866" CDS complement(2456686..2457129) /locus_tag="STM2344" /note="similar to E. coli putative PTS system enzyme II A component (AAC77152.1); Blastp hit to AAC77152.1 (154 aa), 41% identity in aa 12 - 149" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system" /protein_id="NP_461286.1" /db_xref="GeneID:1253866" /translation="MLGTWLSDATITLQESVETWPQALEICGKPLLDAGVIAPEYLTA IVQQHQKLGPYYVLAPGLAMPHARPEEGAKGLGLSLLKLQHGVSFGADEFDPVDIIIM LAAPDKHSHIEMISALAELFSSDVDMEKLHQAKNLEDIKTIIDRF" misc_feature complement(2456698..2457114) /locus_tag="STM2344" /note="PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211" /db_xref="CDD:238129" misc_feature complement(order(2456932..2456934,2456986..2456988)) /locus_tag="STM2344" /note="active site" /db_xref="CDD:238129" misc_feature complement(2456932..2456934) /locus_tag="STM2344" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238129" regulatory complement(2457130..2457135) /regulatory_class="ribosome_binding_site" /locus_tag="STM2344" /note="putative RBS for STM2344; RegulonDB:STMS1H002473" gene 2457374..2458401 /locus_tag="STM2345" /db_xref="GeneID:1253867" regulatory 2457374..2457379 /regulatory_class="ribosome_binding_site" /locus_tag="STM2345" /note="putative RBS for STM2345; RegulonDB:STMS1H002474" CDS 2457382..2458401 /locus_tag="STM2345" /note="similar to E. coli regulator of gluconate (gnt) operon (AAC76463.1); Blastp hit to AAC76463.1 (313 aa), 37% identity in aa 8 - 299" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_461287.1" /db_xref="GeneID:1253867" /translation="MSIPRKRRSTGKVTIADVAQLAGVGTMTVSRALRTPEQVSDKLR EKIEAAVHELGYMPNLAASALASASSHTIAMVVPNLAEAGCSEMFAGLQQILQPAGYQ IMLAESQHRVEQEEKLLETLLASNIAAAILLSVEHSTTVRQWLKNASIPVMEMGAIRS DPIDMNIGIDNVAAMYELTEMLIQRGYQNIGLLCANQEQWIFQQHLHGWYKAMLRHHM SPNRVINAALPPNFSTGASQLPEFLLAWPELDALVCVSDELACGALYECQRRRIKVPD DLAVVGFGDSDVSRVCQPPLTTMAVPHRKIGSEAGRALLERLNQGNWSDRKSIASSLC MRESC" misc_feature 2457418..2457621 /locus_tag="STM2345" /note="helix_turn _helix lactose operon repressor; Region: HTH_LACI; smart00354" /db_xref="CDD:197675" misc_feature 2457595..2458395 /locus_tag="STM2345" /note="ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_GntR; cd01575" /db_xref="CDD:380489" misc_feature order(2457619..2457621,2457637..2457639,2457646..2457648, 2457658..2457660,2457685..2457696,2457733..2457735, 2457742..2457747,2457751..2457756,2458072..2458074, 2458078..2458080,2458087..2458089,2458174..2458176) /locus_tag="STM2345" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:380489" misc_feature order(2457631..2457636,2457643..2457645,2457778..2457780, 2457847..2457849,2457886..2457888,2457994..2457996, 2458069..2458071,2458231..2458233,2458282..2458284) /locus_tag="STM2345" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:380489" gene complement(2458407..2458972) /locus_tag="STM2346" /db_xref="GeneID:1253868" CDS complement(2458407..2458961) /locus_tag="STM2346" /note="similar to E. coli putative regulator (AAC75359.1); Blastp hit to AAC75359.1 (180 aa), 92% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="putative NTP pyrophosphohydrolase" /protein_id="NP_461288.1" /db_xref="GeneID:1253868" /translation="MVEQRRLASTEWVDIVNEDNEVIAQSSREQMRAQRLRHRATYIV VHDGMGKILVQRRTETKDFLPGMLDATAGGVVQADEQLLESARREAEEELGIAGVPFA EHGLFYFEDQHCRVWGALFSCVSHGPFALQEDEVSEVCWLTPEEITARCDEFTPDSLK ALALWMTRNAKNEAALQEKPEETE" misc_feature complement(2458419..2458958) /locus_tag="STM2346" /note="NUDIX hydrolase YfcD; Provisional; Region: PRK15393" /db_xref="CDD:185291" regulatory complement(2458967..2458972) /regulatory_class="ribosome_binding_site" /locus_tag="STM2346" /note="putative RBS for STM2346; RegulonDB:STMS1H002475" gene complement(2459018..2459581) /gene="yfcE" /locus_tag="STM2347" /db_xref="GeneID:1253869" CDS complement(2459018..2459569) /gene="yfcE" /locus_tag="STM2347" /note="similar to E. coli orf, hypothetical protein (AAC75360.1); Blastp hit to AAC75360.1 (184 aa), 85% identity in aa 2 - 183" /codon_start=1 /transl_table=11 /product="putative phosphoesterase" /protein_id="NP_461289.1" /db_xref="GeneID:1253869" /translation="MKLMFASDIHGSLPATERVLERFAQSGARWLVILGDVLNHGPRN ALPEGYAPAQVAERLNAVATQIIAVRGNCDSEVDQMLLHFPITAPWQQILTQERRLFL THGHLFGPTNLPALHTGDVLVYGHTHLPVAQQQEGLYHFNPGSVSIPKGGYAASYGIL DDNVLSVIALNDQSIIAQVAINS" misc_feature complement(2459024..2459569) /gene="yfcE" /locus_tag="STM2347" /note="phosphodiesterase; Provisional; Region: PRK09453" /db_xref="CDD:181869" misc_feature complement(order(2459186..2459188,2459192..2459194, 2459258..2459260,2459351..2459356,2459462..2459464, 2459540..2459542,2459546..2459548)) /gene="yfcE" /locus_tag="STM2347" /note="active site" /db_xref="CDD:277320" misc_feature complement(order(2459186..2459188,2459192..2459194, 2459258..2459260,2459354..2459356,2459462..2459464, 2459540..2459542,2459546..2459548)) /gene="yfcE" /locus_tag="STM2347" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:277320" misc_feature complement(order(2459252..2459254,2459273..2459308, 2459348..2459362,2459369..2459371,2459480..2459485)) /gene="yfcE" /locus_tag="STM2347" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:277320" regulatory complement(2459576..2459581) /regulatory_class="ribosome_binding_site" /gene="yfcE" /locus_tag="STM2347" /note="putative RBS for yfcE; RegulonDB:STMS1H002476" gene complement(2459625..2460278) /gene="yfcF" /locus_tag="STM2348" /db_xref="GeneID:1253870" CDS complement(2459625..2460269) /gene="yfcF" /locus_tag="STM2348" /note="similar to E. coli orf, hypothetical protein (AAC75361.1); Blastp hit to AAC75361.1 (214 aa), 80% identity in aa 1 - 214" /codon_start=1 /transl_table=11 /product="putative glutathione-S-transferase" /protein_id="NP_461290.1" /db_xref="GeneID:1253870" /translation="MSKPVIVLWSDANFFSPYVLSAWVALQEKGLSFTLKTRDLDQGE HLQPGWRGYALTQRVPVLEADNFELSESSAIAEYLEERFAPPQWERIYPHDLQKRARA RQIQAWLRSDLLPLREERPTDVVFAGAKKAPLSEAGKASAAKLFATAEALLGQGTQNL FGEWCIADTDLALMINRLALHGDDVPASLAAYATFQWQRASVQRFIALSSKRSG" misc_feature complement(2459628..2460269) /gene="yfcF" /locus_tag="STM2348" /note="glutathione transferase; Region: PRK15113" /db_xref="CDD:185068" regulatory complement(2460273..2460278) /regulatory_class="ribosome_binding_site" /gene="yfcF" /locus_tag="STM2348" /note="putative RBS for yfcF; RegulonDB:STMS1H002477" gene 2460401..2461059 /gene="yfcG" /locus_tag="STM2349" /db_xref="GeneID:1253871" regulatory 2460401..2460406 /regulatory_class="ribosome_binding_site" /gene="yfcG" /locus_tag="STM2349" /note="putative RBS for yfcG; RegulonDB:STMS1H002478" CDS 2460412..2461059 /gene="yfcG" /locus_tag="STM2349" /note="similar to E. coli putative S-transferase (AAC75362.1); Blastp hit to AAC75362.1 (215 aa), 83% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="putative glutathione S-transferase" /protein_id="NP_461291.1" /db_xref="GeneID:1253871" /translation="MIDLYYAPTPNGHKITLFLEEAELAYRLLKVDISKGNQFRPDFL AISPNNKIPAIVDHAPADGGQPLSLFESGEILLYLAEKSGKLLSGELRERHTTLQWLF WQVGGLGPMLGQNHHFNHFAPQAIPYAIERYQVETQRLYNVLNKRLETSPWLGGDHYS IADIASWPWVNAHQRQRIDLDTYPAVYNWFERIRTRPATARALLQAQLHCNSTKA" misc_feature 2460412..2461032 /gene="yfcG" /locus_tag="STM2349" /note="GSH-dependent disulfide bond oxidoreductase; Provisional; Region: PRK13972" /db_xref="CDD:172475" gene 2461174..2462078 /gene="yfcH" /locus_tag="STM2350" /db_xref="GeneID:1253872" regulatory 2461174..2461179 /regulatory_class="ribosome_binding_site" /gene="yfcH" /locus_tag="STM2350" /note="putative RBS for yfcH; RegulonDB:STMS1H002479" CDS 2461185..2462078 /gene="yfcH" /locus_tag="STM2350" /note="similar to E. coli putative sugar nucleotide epimerase (AAC75364.1); Blastp hit to AAC75364.1 (297 aa), 86% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="putative sugar nucleotide epimerase" /protein_id="NP_461292.1" /db_xref="GeneID:1253872" /translation="MQILITGGTGLIGRHLIPRLLTLGHQVTVVTRNPDNARQILDSR VTLWKGLAEREHLNEIDAIINLAGEPIADKRWTSQQKERLCQSRWAITQKLVDLIHAS ATPPSVLISGSATGYYGDLGDVVVTEDEPPHNEFTHKLCARWEQIACRAQSDQTRVCL LRTGVVLAPQGGILGKMVPPFRLGLGGPVGNGRQYLAWIHIDDMVNGILWLLDNDLRG PFNMVSPYPVHNEHFAHALGRALRRPAIIRIPATAIRLLMGESSVLVLGGQRALPKRL EAAGFAFRWYDLEEALADVIR" misc_feature 2461191..2462075 /gene="yfcH" /locus_tag="STM2350" /note="NAD dependent epimerase/dehydratase family enzyme [General function prediction only]; Region: YfcH; COG1090" /db_xref="CDD:440707" gene complement(2462130..2462906) /gene="hisP" /locus_tag="STM2351" /db_xref="GeneID:1253873" CDS complement(2462130..2462906) /gene="hisP" /locus_tag="STM2351" /note="ABC superfamily (atp_bind); histidine transport ATP-binding protein HISP. (SW:HISP_SALTY)" /codon_start=1 /transl_table=11 /product="histidine and lysine/arginine/ornithine transport protein" /protein_id="NP_461293.1" /db_xref="GeneID:1253873" /translation="MMSENKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSG KSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHF NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQ RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARH VSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLK" misc_feature complement(2462133..2462903) /gene="hisP" /locus_tag="STM2351" /note="histidine ABC transporter ATP-binding protein HisP; Region: PRK10619" /db_xref="CDD:182592" gene complement(2462917..2463636) /gene="hisM" /locus_tag="STM2352" /db_xref="GeneID:1253874" CDS complement(2462917..2463624) /gene="hisM" /locus_tag="STM2352" /note="ABC superfamily (membrane); histidine transport system permease protein HISM. (SW:HISM_SALTY)" /codon_start=1 /transl_table=11 /product="histidine and lysine/arginine/ornithine transport protein" /protein_id="NP_461294.1" /db_xref="GeneID:1253874" /translation="MIEIIQEYWKSLLWTDGYRFTGVAITLWLLISSVVMGGLLAVIL AVGRVSSNKFIRFPIWLFTYIFRGTPLYVQLLVFYSGMYTLEIVKGTDLLNAFFRSGL NCTVLALTLNTCAYTTEIFAGAIRSVPHGEIEAARAYGFSSFKMYRCIILPSALRIAL PAYSNEVILMLHSTALAFTATVPDLLKIARDINSATYQPFTAFGIAAVLYLLISYVLI SLFRRAERRWLQHVSSK" misc_feature complement(2462926..2463624) /gene="hisM" /locus_tag="STM2352" /note="histidine ABC transporter permease HisM; Region: PRK15069" /db_xref="CDD:185029" misc_feature complement(order(2462971..2462973,2462980..2462985, 2462992..2462997,2463001..2463006,2463013..2463018, 2463046..2463051,2463088..2463093,2463100..2463111, 2463130..2463132,2463139..2463144,2463184..2463186, 2463235..2463237,2463244..2463249,2463259..2463261, 2463265..2463270,2463277..2463279,2463283..2463285, 2463289..2463294,2463388..2463390,2463394..2463399, 2463406..2463435,2463439..2463450,2463478..2463480, 2463493..2463498,2463505..2463510)) /gene="hisM" /locus_tag="STM2352" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2463094..2463111,2463388..2463432)) /gene="hisM" /locus_tag="STM2352" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(2463016..2463018,2463046..2463048, 2463055..2463057,2463091..2463093,2463307..2463309, 2463388..2463390)) /gene="hisM" /locus_tag="STM2352" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(2463163..2463165,2463175..2463180, 2463196..2463234)) /gene="hisM" /locus_tag="STM2352" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene complement(2463621..2464320) /gene="hisQ" /locus_tag="STM2353" /db_xref="GeneID:1253875" CDS complement(2463621..2464307) /gene="hisQ" /locus_tag="STM2353" /note="ABC superfamily (membrane); histidine transport system permease protein HISQ. (SW:HISQ_SALTY)" /codon_start=1 /transl_table=11 /product="histidine and lysine/arginine/ornithine transport system" /protein_id="NP_461295.1" /db_xref="GeneID:1253875" /translation="MLYGFSGVILQGAIVTLELALSSVVLAVLIGLVGAGAKLSQNRV TGLIFEGYTTLIRGVPDLVLMLLIFYGLQIALNVVTDSLGIDQIDIDPMVAGIITLGF IYGAYFTETFRGAFMAVPKGHIEAATAFGFTHGQTFRRIMFPAMMRYALPGIGNNWQV ILKATALVSLLGLEDVVKATQLAGKSTWEPFYFAVVCGLIYLVFTTVSNGVLLLLERR YSVGVKRADL" misc_feature complement(2463624..2464307) /gene="hisQ" /locus_tag="STM2353" /note="histidine ABC transporter permease HisQ; Region: PRK15135" /db_xref="CDD:185089" misc_feature complement(order(2463690..2463695,2463702..2463707, 2463711..2463716,2463723..2463728,2463756..2463761, 2463798..2463803,2463810..2463821,2463840..2463842, 2463849..2463854,2463894..2463896,2463945..2463947, 2463954..2463959,2463969..2463971,2463975..2463980, 2463987..2463989,2463993..2463995,2463999..2464004, 2464101..2464103,2464107..2464112,2464119..2464148, 2464152..2464163,2464191..2464193,2464206..2464211, 2464218..2464223)) /gene="hisQ" /locus_tag="STM2353" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2463804..2463821,2464101..2464145)) /gene="hisQ" /locus_tag="STM2353" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(2463726..2463728,2463756..2463758, 2463765..2463767,2463801..2463803,2464017..2464019, 2464101..2464103)) /gene="hisQ" /locus_tag="STM2353" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(2463873..2463875,2463885..2463890, 2463906..2463944)) /gene="hisQ" /locus_tag="STM2353" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(2463631..2463636) /regulatory_class="ribosome_binding_site" /gene="hisQ" /locus_tag="STM2353" /note="putative RBS for hisM; RegulonDB:STMS1H002480" regulatory complement(2464315..2464320) /regulatory_class="ribosome_binding_site" /gene="hisQ" /locus_tag="STM2353" /note="putative RBS for hisQ; RegulonDB:STMS1H002481" gene complement(2464490..2465282) /gene="hisJ" /locus_tag="STM2354" /db_xref="GeneID:1253876" CDS complement(2464490..2465272) /gene="hisJ" /locus_tag="STM2354" /note="ABC superfamily (bind_prot); histidine-binding periplasmic protein precursor (HBP). (SW:HISJ_SALTY)" /codon_start=1 /transl_table=11 /product="histidine transport protein" /protein_id="NP_461296.1" /db_xref="GeneID:1253876" /translation="MKKLALSLSLVLAFSSATAAFAAIPQKIRIGTDPTYAPFESKNA QGELVGFDIDLAKELCKRINTQCTFVENPLDALIPSLKAKKIDAIMSSLSITEKRQQE IAFTDKLYAADSRLVVAKNSDIQPTVASLKGKRVGVLQGTTQETFGNEHWAPKGIEIV SYQGQDNIYSDLTAGRIDAAFQDEVAASEGFLKQPVGKDYKFGGPAVKDEKLFGVGTG MGLRKEDNELREALNKAFAEMRADGTYEKLAKKYFDFDVYGG" misc_feature complement(2464496..2465272) /gene="hisJ" /locus_tag="STM2354" /note="histidine ABC transporter substrate-binding protein HisJ; Provisional; Region: PRK15437" /db_xref="CDD:185334" regulatory complement(2465277..2465282) /regulatory_class="ribosome_binding_site" /gene="hisJ" /locus_tag="STM2354" /note="putative RBS for hisJ; RegulonDB:STMS1H002482" gene complement(2465510..2466303) /gene="argT" /locus_tag="STM2355" /db_xref="GeneID:1253877" CDS complement(2465510..2466292) /gene="argT" /locus_tag="STM2355" /note="ABC superfamily (bind_prot); lysine-arginine-ornithine-binding periplasmic protein precursor(LAO-binding protein). (SW:ARGT_SALTY)" /codon_start=1 /transl_table=11 /product="lysine/arginine/ornithine transport protein" /protein_id="NP_461297.1" /db_xref="GeneID:1253877" /translation="MKKTVLALSLLIGLGATAASYAALPQTVRIGTDTTYAPFSSKDA KGEFIGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIISSLSITDKRQQE IAFSDKLYAADSRLIAAKGSPIQPTLESLKGKHVGVLQGSTQEAYANDNWRTKGVDVV AYANQDLIYSDLTAGRLDAALQDEVAASEGFLKQPAGKEYAFAGPSVKDKKYFGDGTG VGLRKDDTELKAAFDKALTELRQDGTYDKMAKKYFDFNVYGD" misc_feature complement(2465513..2466292) /gene="argT" /locus_tag="STM2355" /note="lysine/arginine/ornithine ABC transporter substrate-binding protein ArgT; Region: PRK15010" /db_xref="CDD:184972" regulatory complement(2466298..2466303) /regulatory_class="ribosome_binding_site" /gene="argT" /locus_tag="STM2355" /note="putative RBS for argT; RegulonDB:STMS1H002483" gene complement(2466581..2467163) /gene="ubiX" /locus_tag="STM2356" /db_xref="GeneID:1253878" CDS complement(2466581..2467150) /gene="ubiX" /locus_tag="STM2356" /EC_number="4.1.1.-" /note="similar to E. coli 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (AAC75371.1); Blastp hit to AAC75371.1 (189 aa), 91% identity in aa 1 - 189" /codon_start=1 /transl_table=11 /product="3-octaprenyl-4-hydroxybenzoate carboxy-lyase" /protein_id="NP_461298.1" /db_xref="GeneID:1253878" /translation="MKRLIVGISGASGAIYGVRLLQILRDVDSVETHLVMSQAARQTL ALETHFSLREVQALADVTHDARDIAASISSGSYPTAGMVILPCSIKTLSGIVHSYTDG LLTRAADVILKERRPLVLCVRETPLHIGHLRLMTQAAEIGAVIMPPVPAFYHLPQTLD DVINQTVNRVLDQFDIPLPHDLFVRWQGA" misc_feature complement(2466590..2467150) /gene="ubiX" /locus_tag="STM2356" /note="UbiX family flavin prenyltransferase; Region: PRK06029" /db_xref="CDD:235677" regulatory complement(2467158..2467163) /regulatory_class="ribosome_binding_site" /gene="ubiX" /locus_tag="STM2356" /note="putative RBS for ubiX; RegulonDB:STMS1H002484" gene complement(2467177..2468589) /locus_tag="STM2357" /db_xref="GeneID:1253879" CDS complement(2467177..2468583) /locus_tag="STM2357" /note="similar to E. coli putative amino acid/amine transport protein (AAC73363.1); Blastp hit to AAC73363.1 (475 aa), 36% identity in aa 9 - 463" /codon_start=1 /transl_table=11 /product="putative amino acid transporter" /protein_id="NP_461299.1" /db_xref="GeneID:1253879" /translation="MDTLQQSPPAEPEGGLRRNLKKRHLLMMSLGGTIGTGLFIGIAE PLSSVGPAGTLLAYLFAGTIMLATMMCLGELSCAFPHSGSFQHYALMFMPSPCWSYTI GWLYWFSWVFSLAADLTAAGFIAHQFFPAVPVYMFCLAILLILTAINLTSAKSFGECE YWLSAIKVFAIVLFICAGGVMIYSLMGHSDWHPTLKTDGMWFPHGWEQIVVYMTIVIY SFQGVELVGNAAGETESPHIILPKVILGIGLRIILFYGLAIAVLALVYPHELTPNGQS PFVWVFSHAGIPGADTLMTLVIFSAAVSAANSAIYASSRMLWSMAGDRFAPACFGKTN GGGVPVYAILITALLALVSLLTRYIPAQQFYLYLIASTGQVGCLAWITIGWCQYRFRQ SVRNGTYASDLLRYRSPLFPWTARFVIITNFAIMVGTWFSEQGVVIMLVELAFMIGIL LSWYLFRPTLSRLRNTVG" misc_feature complement(2467207..2468565) /locus_tag="STM2357" /note="Amino acid permease [Amino acid transport and metabolism]; Region: LysP; COG0833" /db_xref="CDD:440595" regulatory complement(2468584..2468589) /regulatory_class="ribosome_binding_site" /locus_tag="STM2357" /note="putative RBS for STM2357; RegulonDB:STMS1H002485" gene complement(2468647..2469757) /locus_tag="STM2358" /db_xref="GeneID:1253880" CDS complement(2468647..2469750) /locus_tag="STM2358" /note="similar to E. coli orf, hypothetical protein (AAC76406.1); Blastp hit to AAC76406.1 (387 aa), 27% identity in aa 33 - 293" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461300.1" /db_xref="GeneID:1253880" /translation="MYMPVLEINLRKLEENARTEKALLASSGIDVMAVNKVFDGCVET AQAVFNGGITVIAESRTYNLKKIRETGCTTCLLRSPCLSEIEDVVRYADISLNSEPVV LRALSQEAQRQGKTHQVLLMVDMGDLREGIWFGEYQRILETVTLITGLPGLELYGLGT NFNCYGTVLPTVKNGEDFLALAARLEADSGIPVRRLSAGNCTSYHLLDKGIWPQGLNH LRIGGLHEFGIEYVDMKYLNEFHHSAKPVDKACSDMYILEAEIIELNSKPTVPVGELG VDAFLQSKTFVDRGIRRRALLAFGRQDVPSDNCVPCDDAITILGQTSDHTLVDIEDCR QSLKVGDVVRFELDYTGLLMACQTKGVAWRFTR" misc_feature complement(2468656..2469744) /locus_tag="STM2358" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase-like 1; Region: PLPDE_III_AR_like_1; cd06815" /db_xref="CDD:143490" misc_feature complement(order(2468668..2468670,2468845..2468850, 2468857..2468859,2468863..2468865,2468869..2468871, 2468956..2468967,2469358..2469369,2469436..2469438, 2469448..2469450,2469454..2469456,2469499..2469501, 2469544..2469546,2469562..2469567,2469571..2469576, 2469637..2469639,2469643..2469645,2469742..2469744)) /locus_tag="STM2358" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143490" misc_feature complement(order(2468848..2468850,2469082..2469093, 2469148..2469153,2469268..2469270,2469364..2469366, 2469385..2469387,2469517..2469519,2469580..2469582, 2469643..2469645,2469649..2469651)) /locus_tag="STM2358" /note="active site" /db_xref="CDD:143490" misc_feature complement(order(2469082..2469093,2469148..2469153, 2469268..2469270,2469385..2469387,2469517..2469519, 2469580..2469582,2469643..2469645,2469649..2469651)) /locus_tag="STM2358" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143490" misc_feature complement(order(2469082..2469084,2469268..2469270, 2469364..2469366,2469643..2469645)) /locus_tag="STM2358" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143490" misc_feature complement(2469643..2469645) /locus_tag="STM2358" /note="catalytic residue [active]" /db_xref="CDD:143490" gene complement(2469752..2471185) /locus_tag="STM2359" /db_xref="GeneID:1253881" CDS complement(2469752..2471173) /locus_tag="STM2359" /note="similar to E. coli acid sensitivity protein, putative transporter (AAC74565.1); Blastp hit to AAC74565.1 (511 aa), 25% identity in aa 15 - 479" /codon_start=1 /transl_table=11 /product="putative amino acid transporter" /protein_id="NP_461301.1" /db_xref="GeneID:1253881" /translation="MSNTNSGLLGIKDIVFMNVIAILSLRQIPNVAPYGASAMLLWVI AAFCLFFPLAMVCGELSTGWPKDGGIFVWIKEAFGKRIAWIVVVCFLFSCVLFFPLML QFGFTALGYMIGGGLAENKAFIGIGSAVIFWLLTLMNIRGMEWTKIINSISAWCGVFI PSAILILLAVVWLCTGHQMQTDYTTAKNWIPDLGHWDTIVFLSSMMFAFAGLEVAPMI AGRTRNPQRDFPRAMAVSAAVIVGIYMVGTWALNTLLPAGKTDIVAGVMQAMHAAADT LHMPWLIPVMAICMFFGALGQINSWLVGPIYMLQEASREDNLLGDRIGKLHPVWKTPA FALTVQAIIVTVLCFSTFISPSVAAAYWMLTALTTITYFIPYLVMFPAFWRLRKTQPD TPRSFKIPGKVLPAILPALGFLSIAFAVALLFIPPSQIDMGGYFQYAGKIIGGAVLAV VVAEYIYHRAQKRNARLSMAGGK" misc_feature complement(2469788..2471149) /locus_tag="STM2359" /note="Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism]; Region: PotE; COG0531" /db_xref="CDD:440297" regulatory complement(2469752..2469757) /regulatory_class="ribosome_binding_site" /locus_tag="STM2358" /note="putative RBS for STM2358; RegulonDB:STMS1H002486" regulatory complement(2471180..2471185) /regulatory_class="ribosome_binding_site" /locus_tag="STM2359" /note="putative RBS for STM2359; RegulonDB:STMS1H002487" gene complement(2471264..2472666) /locus_tag="STM2360" /db_xref="GeneID:1253882" CDS complement(2471264..2472661) /locus_tag="STM2360" /note="similar to E. coli diaminopimelate decarboxylase (AAC75877.1); Blastp hit to AAC75877.1 (420 aa), 27% identity in aa 182 - 419, 26% identity in aa 20 - 289" /codon_start=1 /transl_table=11 /product="putative diaminopimelate decarboxylase" /protein_id="NP_461302.1" /db_xref="GeneID:1253882" /translation="MTDSIMQNYNQLREQVINGDRRFQHKDGHLCFEGVDLDALARQY PTPFYVFSEPEIIRNIHEIQQAFAAHKNTKTFFASKTCSVMGVLKAIRDAGICAEANS QYEVRKCLEIGFRGDQIVFNGVVKKPADLEYAIANDLYLINVDSLYELEHIDAISRKL KKVANVCVRVEPNVPSATHAELVTAFHAKSGLDLEQAEETCRRILAMPYVHLRGLHMH VGDQVPESEPFAKATKVLVDESRRLEEVLGIKFDLINVGGGIPVPYKYDDENGDPLKD NMYAGITAQDFADAVIREVHKWRTDVEICIEPGRKVTGSAAVLLTEVSCEKRKTNYDL NGNVECHVEWKFVDAGYSVLSDSQHFDWFFYVYNASRMTAAHDAWIKLAGPLCDGGDY FHMGVKGEEFLLPKETHVGDIVAFLDAGAYTIESQTVYNNRPRTGVVMIDKNGDTRLI RREDSYEDMVKYDIY" misc_feature complement(2471270..2472589) /locus_tag="STM2360" /note="Diaminopimelate decarboxylase [Amino acid transport and metabolism]; Region: LysA; COG0019" /db_xref="CDD:439790" regulatory complement(2472661..2472666) /regulatory_class="ribosome_binding_site" /locus_tag="STM2360" /note="putative RBS for STM2360; RegulonDB:STMS1H002488" gene 2472865..2474299 /locus_tag="STM2361" /db_xref="GeneID:1253883" regulatory 2472865..2472870 /regulatory_class="ribosome_binding_site" /locus_tag="STM2361" /note="putative RBS for STM2361; RegulonDB:STMS1H002489" CDS 2472872..2474299 /locus_tag="STM2361" /note="similar to E. coli response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) (AAC75280.1); Blastp hit to AAC75280.1 (461 aa), 39% identity in aa 122 - 456" /codon_start=1 /transl_table=11 /product="putative regulatory protein" /protein_id="NP_461303.1" /db_xref="GeneID:1253883" /translation="MASTNQELASALRMFSRFFDLIHQPLAVINERGEYVYYNQESAD LDGYSIERAMGKHMLDVYPGMKETQSTMLSSLKKGVEYIGHYQIYYNARGQAVDYQHT TAPLYASDGGMVGVIEIGRNMSGVRRLQEQVVELNQLLYADHHEKHHAIITENPEMLS NIAKAKRLAASNIPVTIVGETGTGKELFSRLIHQCSKRANKPFIALNCGALPPTLIES TLFGTVRGAYTGAENSQGYLELANGGTLFLDELNAMPIEMQSKLLRFLQDKTFWRLGG QQQLHSDVRIVAAMNEAPVKLIQQERLRADLFYRLSVGMLTLPPLRARPEDIPLLANY FIDKYRNDVPQDIHGLSETARADLLNHAWPGNVRMLENAIVRSMIMQEKDGLLKHIIF EQDELNLGVPETAPENPLPSSPDPQYEGSLEVRVANYERHLIETALDTHQGNIAAAAR SLNVSRTTLQYKVQKYAIRFGVVRN" misc_feature 2472878..2474278 /locus_tag="STM2361" /note="RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms]; Region: RocR; COG3829" /db_xref="CDD:443041" gene complement(2474335..2475866) /gene="purF" /locus_tag="STM2362" /db_xref="GeneID:1253884" CDS complement(2474335..2475852) /gene="purF" /locus_tag="STM2362" /EC_number="2.4.2.14" /note="PRPP amidotransferase; similar to E. coli amidophosphoribosyltransferase = PRPP amidotransferase (AAC75372.1); Blastp hit to AAC75372.1 (505 aa), 96% identity in aa 1 - 505" /codon_start=1 /transl_table=11 /product="amidophosphoribosyltransferase" /protein_id="NP_461304.1" /db_xref="GeneID:1253884" /translation="MCGIVGIAGVMPVNQSIYDALTVLQHRGQDAAGIITIDANNCFR LRKANGLVNDIFEARHMQRLQGNMGIGHVRYPTAGSSSASEAQPFYVNSPYGITLAHN GNLTNAHELRKKLFEEKRRHINTTSDSEILLNIFASELDNFRHYPLEADNIFAAIAAT NRQIRGAYACVAMIIGHGMVAFRDPHGIRPLVLGKRDVGDGRTEYMVASESVALDTLG FEFLRDVAPGEAIYITEKGQLFTRQCADNPVSNPCLFEYVYFARPDSFIDKISVYSAR VNMGTKLGEKIAREWEDLDIDVVIPIPETSCDIALEIARILGKPYRQGFVKNRYVGRT FIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGTTSEQIIEMAREAGAKKVY LASAAPEIRFPNVYGIDMPTANELIAHGREVDEIRQIIGADGLIFQDLNDLIEAVRAE NPDIQQFECSVFNGIYVTKDVDQQYLDFLDSLRNDDAKAVLFQNEMENLEMHNEG" misc_feature complement(2474404..2475852) /gene="purF" /locus_tag="STM2362" /note="Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism]; Region: PurF; COG0034" /db_xref="CDD:439804" regulatory complement(2475861..2475866) /regulatory_class="ribosome_binding_site" /gene="purF" /locus_tag="STM2362" /note="putative RBS for purF; RegulonDB:STMS1H002490" gene complement(2475890..2476455) /gene="cvpA" /locus_tag="STM2363" /db_xref="GeneID:1253885" CDS complement(2475890..2476378) /gene="cvpA" /locus_tag="STM2363" /note="similar to E. coli membrane protein required for colicin V production (AAC75373.1); Blastp hit to AAC75373.1 (162 aa), 96% identity in aa 1 - 161" /codon_start=1 /transl_table=11 /product="membrane protein required for colicin V production" /protein_id="NP_461305.1" /db_xref="GeneID:1253885" /translation="MVWIDYAIIAVIAFSCLVSLIRGFVREALSLVTWGCAFFVASHY YTYLSVWFTGFEDELVRNGIAIAVLFIATLIVGAIVNFVIGQLVEKTGLSGTDRVLGI CFGALRGALIVAAILFFLDTFTGLSKSEDWSKSQLIPQFSFIIRWFFDYLQSSSSFLP RT" misc_feature complement(2475893..2476378) /gene="cvpA" /locus_tag="STM2363" /note="colicin V production protein; Provisional; Region: PRK10845" /db_xref="CDD:182773" regulatory complement(2476384..2476389) /regulatory_class="ribosome_binding_site" /gene="cvpA" /locus_tag="STM2363" /note="putative RBS for cvpA; RegulonDB:STMS1H002491" regulatory complement(2476429..2476437) /regulatory_class="minus_10_signal" /gene="cvpA" /locus_tag="STM2363" /note="putative -10_signal for cvpA; RegulonDB:STMLTH004539" protein_bind complement(2476433..2476449) /gene="cvpA" /locus_tag="STM2363" /note="putative binding site for PurR, RegulonDB: STMS1H000346" /bound_moiety="PurR" regulatory complement(2476447..2476455) /regulatory_class="minus_35_signal" /gene="cvpA" /locus_tag="STM2363" /note="putative -35_signal for cvpA; RegulonDB:STMLTH004539" gene complement(2476689..2477376) /gene="dedD" /locus_tag="STM2364" /db_xref="GeneID:1253886" CDS complement(2476689..2477363) /gene="dedD" /locus_tag="STM2364" /note="similar to E. coli putative lipoprotein (AAC75374.1); Blastp hit to AAC75374.1 (211 aa), 82% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_461306.1" /db_xref="GeneID:1253886" /translation="MASKFQNRLVGTIVLVALGVIVLPGLLDGQKKHYQDEFAAIPLV PKPGDRDEPDMMPAATQALPTQPPEGAAEEVRAGDAAAPSLDPSRMASNNVELDPIPV ETPKPKPVEKPKPQPKPQQPVVAASTPTPAPQPVADDKPAPTGKAYVVQLGALKNADK VNEIVGKLRSAGFRVYTSPSTPVQGKITRILVGPDASKDKMKGSLGELKQISGLSGVV MGYSPN" misc_feature complement(2476692..2477363) /gene="dedD" /locus_tag="STM2364" /note="cell division protein DedD; Provisional; Region: PRK11633" /db_xref="CDD:236940" gene complement(2477353..2478638) /gene="folC" /locus_tag="STM2365" /db_xref="GeneID:1253887" CDS complement(2477353..2478621) /gene="folC" /locus_tag="STM2365" /EC_number="6.3.2.12" /EC_number="6.3.2.17" /note="multifunctional; contains formylTHF polyglutamate synthase activity; similar to E. coli dihydrofolate:folylpolyglutamate synthetase; dihydrofolate synthetase (AAC75375.1); Blastp hit to AAC75375.1 (422 aa), 87% identity in aa 4 - 422; folylpolyglutamate synthase" /codon_start=1 /transl_table=11 /product="dihydrofolate synthase" /protein_id="NP_461307.1" /db_xref="GeneID:1253887" /translation="MKNKSIPQAASPLASWLSYLENLHSKSIDLGLERVSQVAARLDI LKPAPFVFTVAGTNGKGTTCRTLESVLIAAGYRVGVYSSPHLVRYTERVRVQGKELAE SAHTASFAEIEAARGDISLTYFEYGTLSALWLFKQANLDVVILEVGLGGRLDATNIVD ADVAVITSIALDHTDWLGPDRESIGREKAGIFRAEKPAIVGEPEMPATIADVAQETGA LLRRRGVDWRYEVTATHWAFTDGDGTLAGLPLPQVPQPNAATALAALRASRLNIDEQA IRDGIAQATLPGRFQIVSESPRVIFDVAHNPHAAEYLTGRLKMLPKRGRVLAVIGMLH DKDIAGTLAWLKSVVDDWYCAPLEGPRGATAEQLLEHLGKGNVYDSVAQAWQAAIDAA QPEDTVLVCGSFHTVAHVMEVIDAGRIGGE" misc_feature complement(2477374..2478621) /gene="folC" /locus_tag="STM2365" /note="bifunctional folylpolyglutamate synthase/ dihydrofolate synthase; Provisional; Region: PRK10846" /db_xref="CDD:182774" regulatory complement(2477371..2477376) /regulatory_class="ribosome_binding_site" /gene="dedD" /locus_tag="STM2364" /note="putative RBS for dedD; RegulonDB:STMS1H002492" regulatory complement(2478633..2478638) /regulatory_class="ribosome_binding_site" /gene="folC" /locus_tag="STM2365" /note="putative RBS for folC; RegulonDB:STMS1H002493" gene complement(2478689..2479694) /gene="accD" /locus_tag="STM2366" /db_xref="GeneID:1253888" CDS complement(2478689..2479603) /gene="accD" /locus_tag="STM2366" /EC_number="6.4.1.2" /note="similar to E. coli acetylCoA carboxylase, carboxytransferase component, beta subunit (AAC75376.1); Blastp hit to AAC75376.1 (304 aa), 98% identity in aa 1 - 304" /codon_start=1 /transl_table=11 /product="acetylCoA carboxylase, beta subunit" /protein_id="NP_461308.1" /db_xref="GeneID:1253888" /translation="MSWIERIKSNITPTRKASIPEGVWTKCDSCGQVLYRAELERNLE VCPKCDHHMRMSARNRLHSLLDEGSLVELGSELEPKDVLKFRDSKKYKDRLASAQKET GEKDALVVMKGTLHGMPVVAAAFEFAFMGGSMGSVVGARFVRAVEQALEDNCPLVCFS ASGGARMQEALMSLMQMAKTSAALAKMQERGLPYISVLTDPTMGGVSASFAMLGDLNI AEPKALIGFAGPRVIEQTVREKLPPGFQRSEFLIEKGAIDMIVRRPEMRLKLASILAK LMNLPAPNPDAPREGVVVPPAPDQESEA" misc_feature complement(2478767..2479603) /gene="accD" /locus_tag="STM2366" /note="Acetyl-CoA carboxylase beta subunit [Lipid transport and metabolism]; Region: AccD; COG0777" /db_xref="CDD:440540" regulatory complement(2479616..2479621) /regulatory_class="ribosome_binding_site" /gene="accD" /locus_tag="STM2366" /note="putative RBS for accD; RegulonDB:STMS1H002494" regulatory complement(2479667..2479675) /regulatory_class="minus_10_signal" /gene="accD" /locus_tag="STM2366" /note="putative -10_signal for accD; RegulonDB:STMLTH004540" regulatory complement(2479686..2479694) /regulatory_class="minus_35_signal" /gene="accD" /locus_tag="STM2366" /note="putative -35_signal for accD; RegulonDB:STMLTH004540" gene complement(2479753..2480427) /gene="dedA" /locus_tag="STM2367" /db_xref="GeneID:1253889" CDS complement(2479753..2480412) /gene="dedA" /locus_tag="STM2367" /note="similar to E. coli orf, hypothetical protein (AAC75377.1); Blastp hit to AAC75377.1 (219 aa), 96% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="putative DedA family" /protein_id="NP_461309.1" /db_xref="GeneID:1253889" /translation="MDLIYFIIDFILHIDVHLAELVAEYGVWVYAILFLILFCETGLV VTPFLPGDSLLFVAGALASLETNDLNVHVMVALMLIAAIVGDAVNYTIGRLFGEKLFS NPNSKIFRRSYLDKTHQFYEKHGGKTIILARFVPIVRTFAPFVAGMGHMSYRHFAAYN VIGALLWVLLFTYAGYFFGTIPLIQDNLKLLIVGIIVVSILPGVIEIVRHKRAASRAA K" misc_feature complement(2479756..2480412) /gene="dedA" /locus_tag="STM2367" /note="DedA family protein; Region: PRK10847" /db_xref="CDD:182775" regulatory complement(2480422..2480427) /regulatory_class="ribosome_binding_site" /gene="dedA" /locus_tag="STM2367" /note="putative RBS for dedA; RegulonDB:STMS1H002495" gene complement(2480461..2481290) /gene="truA" /locus_tag="STM2368" /db_xref="GeneID:1253890" CDS complement(2480461..2481273) /gene="truA" /locus_tag="STM2368" /EC_number="4.2.1.70" /note="similar to E. coli pseudouridylate synthase I (AAC75378.1); Blastp hit to AAC75378.1 (270 aa), 96% identity in aa 1 - 270" /codon_start=1 /transl_table=11 /product="pseudouridylate synthase I" /protein_id="NP_461310.1" /db_xref="GeneID:1253890" /translation="MSGQQSSAVYKIALGIEYDGSKYYGWQRQNEVRSVQEKLEKALS QVANEPINVFCAGRTDAGVHGTGQVVHFETTALRKDAAWTLGVNANLPGDIAVRWVKT VPDDFHARFSATARRYRYIIYNHRLRPAVLAKGVTHYYEPLDAERMHRAAQCLLGEND FTSFRAVQCQSRTPWRNVMHINVTRHGPYVVVDIKANAFVHHMVRNIVGSLLEVGAHN QPESWIAELLAARDRTLAAATAKAEGLYLVAVDYPDRFDLPKPPMGPLFLAD" misc_feature complement(2480500..2481246) /gene="truA" /locus_tag="STM2368" /note="tRNA U38,U39,U40 pseudouridine synthase TruA [Translation, ribosomal structure and biogenesis]; Region: TruA; COG0101" /db_xref="CDD:439871" gene complement(2481273..2482301) /gene="usg" /locus_tag="STM2369" /db_xref="GeneID:1253891" CDS complement(2481273..2482286) /gene="usg" /locus_tag="STM2369" /note="similar to E. coli putative PTS system enzyme II A component (AAC75379.1); Blastp hit to AAC75379.1 (337 aa), 89% identity in aa 1 - 337" /codon_start=1 /transl_table=11 /product="putative aspartate-semialdehyde dehydrogenase" /protein_id="NP_461311.1" /db_xref="GeneID:1253891" /translation="MSEGWNIAILGATGAVGEALLETLAERQFPVGEIYALARHESAG EHLRFGGKSVIVQDAADFDWTQAQLAFFVAGAEASAAWIDDATNAGCLVIDSSGLFAL EPDVPLVVPEVNPYVLADYRNRNVIAVADSLTSQLLAALKPLIDQGGLSRIAVTSMLS ASAQGKKAVDALAGQSAKLLNGIPIDEDDFFGRQLAFNMLPLLPDREGSVRQERRIVD EVRKILQDDGVMISASVVQSPVFYGHAQMVSFEALRPLAAEEAREAFSRGEDIVLSEE TDYPTQVGDASGNPQLSIGCVHNDYGMPEQIQFWSVADNVRFGGALMAVKIAEKLVQE YLY" misc_feature complement(2481276..2482286) /gene="usg" /locus_tag="STM2369" /note="putative semialdehyde dehydrogenase; Provisional; Region: PRK08040" /db_xref="CDD:181205" regulatory complement(2481285..2481290) /regulatory_class="ribosome_binding_site" /gene="truA" /locus_tag="STM2368" /note="putative RBS for truA; RegulonDB:STMS1H002496" regulatory complement(2482296..2482301) /regulatory_class="ribosome_binding_site" /gene="usg" /locus_tag="STM2369" /note="putative RBS for usg; RegulonDB:STMS1H002497" gene complement(2482354..2483504) /gene="pdxB" /locus_tag="STM2370" /db_xref="GeneID:1253892" CDS complement(2482354..2483490) /gene="pdxB" /locus_tag="STM2370" /EC_number="1.1.1.-" /note="similar to E. coli erythronate-4-phosphate dehydrogenase (AAC75380.1); Blastp hit to AAC75380.1 (378 aa), 88% identity in aa 1 - 377" /codon_start=1 /transl_table=11 /product="erythronate-4-phosphate dehydrogenase" /protein_id="NP_461312.1" /db_xref="GeneID:1253892" /translation="MKILVDENMPYARELFSRLGEVKAVPGRPIPVEELNHADALMVR SVTKVNESLLSGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSA LLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPRAARGDEGDFRT LDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAALL ARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGTSHIAGYTLEGKARGTTQVFEAYSA FIGREQRVALETLLPAPEFGRITLHGPLDQPTLKRLAHLVYDVRRDDAPLRKVAGIPG EFDKLRKNYLERREWSSLYVMCDDETAAALLCKLGFNAVHHPAH" misc_feature complement(2482357..2483490) /gene="pdxB" /locus_tag="STM2370" /note="erythronate-4-phosphate dehydrogenase PdxB; Provisional; Region: PRK15438" /db_xref="CDD:185335" regulatory complement(2483499..2483504) /regulatory_class="ribosome_binding_site" /gene="pdxB" /locus_tag="STM2370" /note="putative RBS for pdxB; RegulonDB:STMS1H002498" gene 2483580..2484595 /gene="flk" /locus_tag="STM2371" /db_xref="GeneID:1253893" regulatory 2483580..2483585 /regulatory_class="ribosome_binding_site" /gene="flk" /locus_tag="STM2371" /note="putative RBS for flk; RegulonDB:STMS1H002499" CDS 2483594..2484595 /gene="flk" /locus_tag="STM2371" /note="Couples flagellar P- and L-ring assembly to flagellar morphogenesis; Flk (gi|1930001)" /codon_start=1 /transl_table=11 /product="cell division protein" /protein_id="NP_461313.1" /db_xref="GeneID:1253893" /translation="MHPISGAPAQPPGEGRNPLSAASEQPLSMQQRTVLERLITRLIS LTQQQSAEVWAGMKHDLGIKNDAPLLSRHFPAAEQNLTQRLGVAQQNHANRQVLSQLT ELLGVGNNRQAVSDFIRQQYGQTALSQLTPDQLKNVLTLLQQGQLSIPQPQQRPATDR PLLPAEHNTLNQLVTKLAAATGESNKLIWQSMLELSGVKSGELIPAKQFTHLATWLQA RQTLSLQHAPTLHTLQAALKQPLEPDELTAIKEYAQHTYQIQPQTVLTTAQVQDLLNH IFLRRVEREADELEPLSIQPIYRPFAPMIETVKNLSARPGLLFIALIIVLALFWLVS" misc_feature 2483594..2484589 /gene="flk" /locus_tag="STM2371" /note="flagella biosynthesis regulator Flk; Region: flk; PRK10715" /db_xref="CDD:182670" gene complement(2484592..2485782) /locus_tag="STM2372" /db_xref="GeneID:1253894" CDS complement(2484592..2485770) /locus_tag="STM2372" /note="similar to E. coli putative transport protein (AAC75382.1); Blastp hit to AAC75382.1 (392 aa), 88% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_461314.1" /db_xref="GeneID:1253894" /translation="MTAVSQKTTTPSANFSLFRIAFAVFLTYMTVGLPLPVIPLFVHH ELGYSNTMVGIAVGIQFFATVLTRGYAGRLADQYGAKRSALQGMLACGLAGAAWLLAA LLPVSAPVKFALLIVGRLILGFGESQLLTGTLTWGLGLVGPTRSGKVMSWNGMAIYGA LAAGAPLGLLIHSHFGFAALAGTTMVLPLLAWAFNGTVRKVPAYTGERPSLWSVVGLI WKPGLGLALQGVGFAVIGTFISLYFVSNGWTMAGFTLTAFGGAFVLMRILFGWMPDRF GGVKVAVVSLLVETAGLLLLWLAPTAWIALVGAALTGAGCSLIFPALGVEVVKRVPAQ VRGTALGGYAAFQDISYGVTGPLAGMLATSYGYPSVFLAGAISAVVGILVTILSFRRG " misc_feature complement(2484595..2485770) /locus_tag="STM2372" /note="putative transporter; Provisional; Region: PRK12382" /db_xref="CDD:183487" regulatory complement(2485777..2485782) /regulatory_class="ribosome_binding_site" /locus_tag="STM2372" /note="putative RBS for STM2372; RegulonDB:STMS1H002500" gene complement(2485950..2486331) /locus_tag="STM2373" /db_xref="GeneID:1253895" CDS complement(2485950..2486324) /locus_tag="STM2373" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461315.1" /db_xref="GeneID:1253895" /translation="MAKEWFTVKECLGLPGFPGSEPAVRERLYKYSEGKEGVRRKRVK SKAEEFHISVFPLYVHRYLDDSGEEPTPEPISLQEAEPEDIWEMMFRLLTPEQRKQVT GRFKVRGMKAVFPFLFDDTPPR" misc_feature complement(<2486013..2486300) /locus_tag="STM2373" /note="Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily; Region: HTH_MerR-SF; cl02600" /db_xref="CDD:470628" regulatory complement(2486326..2486331) /regulatory_class="ribosome_binding_site" /locus_tag="STM2373" /note="putative RBS for STM2373; RegulonDB:STMS1H002501" gene 2486491..2486745 /locus_tag="STM2374" /db_xref="GeneID:1253896" regulatory 2486491..2486496 /regulatory_class="ribosome_binding_site" /locus_tag="STM2374" /note="putative RBS for STM2374; RegulonDB:STMS1H002502" CDS 2486497..2486745 /locus_tag="STM2374" /note="similar to E. coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); Blastp hit to AAC76220.1 (92 aa), 50% identity in aa 1 - 73" /codon_start=1 /transl_table=11 /product="putatiave helix-turn-helix regulatory protein" /protein_id="NP_461316.1" /db_xref="GeneID:1253896" /translation="MEPKSQDWHRADIKSALEKRGITLRDLSRQAGLSPDSLRNVFTR SWPRAERIIADALGITPKEIWPSRYDDMQIKNDADIAE" misc_feature 2486506..2486706 /locus_tag="STM2374" /note="Predicted transcriptional regulator, lambda repressor-like DNA-binding domain [Transcription]; Region: SfsB; COG3423" /db_xref="CDD:442649" gene 2486906..2487282 /locus_tag="STM2375" /db_xref="GeneID:1253897" regulatory 2486906..2486911 /regulatory_class="ribosome_binding_site" /locus_tag="STM2375" /note="putative RBS for STM2375; RegulonDB:STMS1H002503" CDS 2486914..2487282 /locus_tag="STM2375" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461317.1" /db_xref="GeneID:1253897" /translation="MSWDKRMAVNYAKTHAGSHSQGRCAEFTRKAIQAGGITLGHTYH AKDYGPMLRSAGFTAIGTYEMPREGDVIIIQPYAGGNPSGHMAIYDGTEWYSDFKQRD MWAGPGYRAARPSYTIYRKN" gene 2487274..2487800 /locus_tag="STM2376" /db_xref="GeneID:1253898" regulatory 2487274..2487279 /regulatory_class="ribosome_binding_site" /locus_tag="STM2375" /note="putative RBS for STM2376; RegulonDB:STMS1H002504" CDS 2487282..2487800 /locus_tag="STM2376" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461318.1" /db_xref="GeneID:1253898" /translation="MKTFSLVALILLLCSCSAPHHDSTQAVKQFYTSWMTTFTNDVNT PDDTTALMQRYVAKEVIHRLALIQSLYEQEIVGADYFMYAQDYAPEWIPQLRVGKAHP FLGGEKVDVLLATESTPIHLEVYTRWEEGRWKIYRVRDADRGYEQPIYDAGAITQAEA WSAKVAPEYKKH" misc_feature 2487345..2487707 /locus_tag="STM2376" /note="Protein of unknown function (DUF3828); Region: DUF3828; pfam12883" /db_xref="CDD:403935" gene complement(2487867..2488528) /locus_tag="STM2377" /db_xref="GeneID:1253899" CDS complement(2487867..2488523) /locus_tag="STM2377" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461319.1" /db_xref="GeneID:1253899" /translation="MPTNTLDKIRHSLSCVAVLFGLFGIFVFASFSPSYAWLYLGGLA APFIYSIVFVYAIAAWSIYSKYYPFLSLGRLSFVECFVPALALVCLTVLYNAFSGPEP WMAELSRQFFLHKFLNTLAMCFLAPVAEEIIFRGFLLNSSIGWGRYSRASGIIITSLA FAFMHTQYLFAVTFVYLFVFSSILCVVRMRSRGLMIPIILHILNNAWVVFGLLFSATE " misc_feature complement(2487888..2488178) /locus_tag="STM2377" /note="Membrane protease YdiL, CAAX protease family [Posttranslational modification, protein turnover, chaperones]; Region: YdiL; COG1266" /db_xref="CDD:440877" regulatory complement(2488523..2488528) /regulatory_class="ribosome_binding_site" /locus_tag="STM2377" /note="putative RBS for STM2377; RegulonDB:STMS1H002505" gene complement(2488621..2489845) /gene="fabB" /locus_tag="STM2378" /db_xref="GeneID:1253900" CDS complement(2488621..2489835) /gene="fabB" /locus_tag="STM2378" /EC_number="2.3.1.41" /note="similar to E. coli 3-oxoacyl-[acyl-carrier-protein] synthase I (AAC75383.1); Blastp hit to AAC75383.1 (406 aa), 96% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="3-oxoacyl-[acyl-carrier-protein] synthase I" /protein_id="NP_461320.1" /db_xref="GeneID:1253900" /translation="MKRAVITGLGIVSSIGNNQQEVLASLREGRSGITFSQELKDAGM RSQVWGNVKLDTTGLIDRKVVRFMSDASIYAYLSMEQAVADAGLAPEVYQNNPRVGLI AGSGGGSPKFQVFGADAMRSPRGLKAVGPYVVTKAMASGVSACLATPFKIYGVNYSIS SACATSAHCIGNAVEQIQLGKQDIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKA SRTYDAHRDGFVIAGGGGMVVVEELEHALARGAHIYAEIVGYGATSDGADMVAPSGEG AVRCMQMAMHGVDTPIDYLNSHGTSTPVGDVKELGAIREVFGDNSPAISATKAMTGHS LGAAGVQEAIYSLLMLEHGFIAPSINIEELDEQAAGLNIVTETTERELTTVMSNSFGF GGTNATLVMRKL" misc_feature complement(2488624..2489835) /gene="fabB" /locus_tag="STM2378" /note="beta-ketoacyl-ACP synthase I; Region: PRK07967" /db_xref="CDD:181184" misc_feature complement(order(2488651..2488653,2488657..2488659, 2488999..2489001,2489035..2489049,2489224..2489229, 2489236..2489238,2489299..2489301,2489308..2489313, 2489320..2489322,2489356..2489364,2489368..2489370, 2489374..2489376,2489392..2489394,2489404..2489406, 2489416..2489418,2489434..2489436,2489473..2489478, 2489482..2489484,2489494..2489499,2489518..2489520)) /gene="fabB" /locus_tag="STM2378" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238430" misc_feature complement(order(2488837..2488839,2488942..2488944, 2489347..2489349)) /gene="fabB" /locus_tag="STM2378" /note="active site" /db_xref="CDD:238430" regulatory complement(2489840..2489845) /regulatory_class="ribosome_binding_site" /gene="fabB" /locus_tag="STM2378" /note="putative RBS for fabB; RegulonDB:STMS1H002506" gene 2489927..2491995 /locus_tag="STM2379" /db_xref="GeneID:1253901" regulatory 2489927..2489932 /regulatory_class="ribosome_binding_site" /locus_tag="STM2379" /note="putative RBS for STM2379; RegulonDB:STMS1H002507" CDS 2489935..2491995 /locus_tag="STM2379" /note="similar to E. coli putative peptidase (AAC75384.1); Blastp hit to AAC75384.1 (688 aa), 79% identity in aa 1 - 686" /codon_start=1 /transl_table=11 /product="putative peptidase" /protein_id="NP_461321.3" /db_xref="GeneID:1253901" /translation="MRHQAHIVKIAIPPVRRVTYVKQYAIQPATLEFNAEGTPVSRDF DDVYFSNDNGLEETRYVFLGGNRLAERFPVHSHPLFIVAESGFGTGLNFLTLWQAFDS FRSAHPQATLQRLHFISFEKFPLTRDDLALAHQHWPELAPWAEQLQAQWPLPLPGCHR LLLDRGRVTLDLWFGDINELTDQLDATLNQTVDAWFLDGFAPAKNPDMWTPNLFNAMA RLARPGATLATFTSAGFVRRGLQEAGFTMQKRKGFGRKREMLCGVMEQHLMPTLSAPW FYRSGSEKRETAIIGGGIASALLSLALLRRGWQVTLYCADDQPAQGASGNRQGALYPL LSKHDAAINRFFPTAFTFARRLYDALPVSFDHDWCGVTQLGWDEKSQQKIAQMLSLAL PAGLASALNAEEAEQAVGVTTRCGGITYPAGGWLCPEQLTRAVIALATEQGLQTRFRH TLTSLVAQESRWQLRFTSGETASHETVVLANGHQINRFDQTQPLPVYAVGGQVSHIPT TPALSALRQVLCYDGYLTPQNPHNQQHCIGASYHRGDESTVWREEDQRQNRQRLLDCF PDAKWATEVDVSGNSARCGVRCATRDHLPMVGNVPDYHATLTHYADLADNKTSAAPAP VYPGLFMLGALGSRGLCSAPLCAEILAAQMSNEPIPLDAGTLAALNPNRLWVRKLLKG KAVK" misc_feature 2489998..2491992 /locus_tag="STM2379" /note="bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC; Region: mnmC; PRK01747" /db_xref="CDD:234978" gene complement(2492047..2492333) /gene="yfcL" /locus_tag="STM2380" /db_xref="GeneID:1253902" CDS complement(2492047..2492322) /gene="yfcL" /locus_tag="STM2380" /note="similar to E. coli orf, hypothetical protein (AAC75385.1); Blastp hit to AAC75385.1 (92 aa), 85% identity in aa 1 - 91" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461322.1" /db_xref="GeneID:1253902" /translation="MIAEFESRILALIDDMVEHASDDELFASGYLRGHLTLAIAELES GDDHSVEAVYANVSQSLEKAIGAGELSPRDQALVKAMWDNLFDKAKQ" misc_feature complement(2492065..2492316) /gene="yfcL" /locus_tag="STM2380" /note="YfcL protein; Region: YfcL; pfam08891" /db_xref="CDD:430291" regulatory complement(2492328..2492333) /regulatory_class="ribosome_binding_site" /gene="yfcL" /locus_tag="STM2380" /note="putative RBS for yfcL; RegulonDB:STMS1H002508" gene complement(2492355..2492921) /gene="yfcM" /locus_tag="STM2381" /db_xref="GeneID:1253903" CDS complement(2492355..2492903) /gene="yfcM" /locus_tag="STM2381" /note="similar to E. coli putative transporting ATPase (AAC75386.1); Blastp hit to AAC75386.1 (182 aa), 92% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461323.1" /db_xref="GeneID:1253903" /translation="MNNTHHYEQLIEIFNGCFAEEFNTRLIKGDDEPIYLPADAQVPY HRIVFAHGFYASALHEISHWCIAGKARRELVDFGYWYCPDGRDAQTQSQFEDVEVKPQ AFDWLFCVAAGYPFNVSCDNLEGDIEPDRVAFQRRVHAQVMAYLEQGIPERPARFIKA LQNYYHTPELKAEQFPWPEALN" misc_feature complement(2492361..2492894) /gene="yfcM" /locus_tag="STM2381" /note="Elongation factor P hydroxylase EpmC (EF-P beta-lysylation pathway) [Translation, ribosomal structure and biogenesis]; Region: EpmC; COG3101" /db_xref="CDD:442335" gene complement(2492903..2493732) /gene="yfcA" /locus_tag="STM2382" /db_xref="GeneID:1253904" CDS complement(2492903..2493712) /gene="yfcA" /locus_tag="STM2382" /note="similar to E. coli putative structural protein (AAC75387.1); Blastp hit to AAC75387.1 (269 aa), 90% identity in aa 1 - 269" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_461324.1" /db_xref="GeneID:1253904" /translation="MDNFYDLFMVSPLLLVVLFFVAVLAGFIDSIAGGGGLLTIPALM AAGMSPANALATNKLQACGGSLSSSLYFIRRKVVNLAEQKLNILMTFIGSMSGALLVQ HVQADILRQILPILVIFIGLYFLLMPKLGEEDRQRRLYGLPFALIAGGCVGFYDGFFG PAAGSFYALAFVTLCGYNLAKSTAHAKVLNATSNVGGLLLFIIGGKVIWATGFVMLVG QFLGARMGSRLVLSKGQKLIRPMIVIVSAVMSARLLYDSHGQEILHWLGMN" misc_feature complement(2492906..2493703) /gene="yfcA" /locus_tag="STM2382" /note="hypothetical protein; Provisional; Region: PRK10621" /db_xref="CDD:182593" regulatory complement(2492916..2492921) /regulatory_class="ribosome_binding_site" /gene="yfcM" /locus_tag="STM2381" /note="putative RBS for yfcM; RegulonDB:STMS1H002509" gene complement(2493712..2494546) /gene="mepA" /locus_tag="STM2383" /db_xref="GeneID:1253905" CDS complement(2493712..2494536) /gene="mepA" /locus_tag="STM2383" /note="similar to E. coli murein DD-endopeptidase, penicillin-insensitive (AAC75388.1); Blastp hit to AAC75388.1 (274 aa), 89% identity in aa 1 - 274" /codon_start=1 /transl_table=11 /product="penicillin-insensitive murein DD-endopeptidase" /protein_id="NP_461325.1" /db_xref="GeneID:1253905" /translation="MKKTAIALLAWFVSSASLAATPWQKITHPVPGAAQSIGSFANGC IIGADTLPVQSDNYQVMRTDQRRYFGHPDLVMFIQRLSHQAQQRGLGTVLIGDMGMPA GGRFNGGHASHQTGLDVDIFLQLPKTRWSQAQLLRPQALDLVSRDGKHVVPSRWSSDI ASLIKLAAQDNDVTRIFVNPAIKQQLCLDAGNDRDWLRKVRPWFQHRAHMHVRLRCPA DSLECEDQPLPPPGDGCGAELQSWFEPPKPGTTKPEKKTPPPLPPSCQALLDEHVL" misc_feature complement(2493721..2494536) /gene="mepA" /locus_tag="STM2383" /note="penicillin-insensitive murein endopeptidase; Reviewed; Region: mepA; PRK09429" /db_xref="CDD:236511" regulatory complement(2493727..2493732) /regulatory_class="ribosome_binding_site" /gene="yfcA" /locus_tag="STM2382" /note="putative RBS for yfcA; RegulonDB:STMS1H002510" gene complement(2494540..2495636) /gene="aroC" /locus_tag="STM2384" /db_xref="GeneID:1253906" CDS complement(2494540..2495625) /gene="aroC" /locus_tag="STM2384" /EC_number="4.2.3.5" /note="similar to E. coli chorismate synthase (AAC75389.1); Blastp hit to AAC75389.1 (361 aa), 95% identity in aa 1 - 361" /codon_start=1 /transl_table=11 /product="chorismate synthase" /protein_id="NP_461326.1" /db_xref="GeneID:1253906" /translation="MAGNTIGQLFRVTTFGESHGLALGCIVDGVPPGIPLTEADLQHD LDRRRPGTSRYTTQRREPDQVKILSGVFDGVTTGTSIGLLIENTDQRSQDYSAIKDVF RPGHADYTYEQKYGLRDYRGGGRSSARETAMRVAAGAIAKKYLAEKFGIEIRGCLTQM GDIPLEIKDWRQVELNPFFCPDADKLDALDELMRALKKEGDSIGAKVTVMASGVPAGL GEPVFDRLDADIAHALMSINAVKGVEIGEGFNVVALRGSQNRDEITAQGFQSNHAGGI LGGISSGQHIVAHMALKPTSSITVPGRTINRAGEEVEMITKGRHDPCVGIRAVPIAEA MLAIVLMDHLLRHRAQNADVKTEIPRW" misc_feature complement(2494543..2495604) /gene="aroC" /locus_tag="STM2384" /note="chorismate synthase; Validated; Region: PRK05382" /db_xref="CDD:235438" misc_feature complement(order(2494621..2494623,2494735..2494737, 2494744..2494755,2494759..2494761,2494780..2494788, 2494792..2494800,2494807..2494809,2494855..2494860, 2494870..2494875,2494879..2494884,2494891..2494905, 2494912..2494914,2494918..2494923,2494927..2494935, 2494942..2494947,2494951..2494953,2494963..2494971, 2494975..2494977,2495008..2495025,2495038..2495040, 2495224..2495226,2495248..2495253,2495281..2495295, 2495374..2495376,2495380..2495382,2495386..2495388, 2495392..2495397,2495416..2495421,2495425..2495430, 2495527..2495532,2495542..2495544,2495548..2495550, 2495554..2495556,2495575..2495595)) /gene="aroC" /locus_tag="STM2384" /note="Tetramer interface [polypeptide binding]; other site" /db_xref="CDD:143612" misc_feature complement(order(2494642..2494644,2494654..2494656, 2494735..2494743,2494747..2494752,2494909..2494914, 2495230..2495232,2495239..2495250,2495308..2495313, 2495482..2495484,2495569..2495571)) /gene="aroC" /locus_tag="STM2384" /note="active site" /db_xref="CDD:143612" misc_feature complement(order(2494645..2494647,2494654..2494656, 2494663..2494665,2494735..2494743,2494747..2494749, 2494909..2494917,2495245..2495247,2495251..2495253, 2495305..2495313)) /gene="aroC" /locus_tag="STM2384" /note="FMN-binding site [chemical binding]; other site" /db_xref="CDD:143612" regulatory complement(2494541..2494546) /regulatory_class="ribosome_binding_site" /gene="mepA" /locus_tag="STM2383" /note="putative RBS for mepA; RegulonDB:STMS1H002511" regulatory complement(2495631..2495636) /regulatory_class="ribosome_binding_site" /gene="aroC" /locus_tag="STM2384" /note="putative RBS for aroC; RegulonDB:STMS1H002512" gene complement(2495661..2496602) /gene="yfcB" /locus_tag="STM2385" /db_xref="GeneID:1253907" CDS complement(2495661..2496593) /gene="yfcB" /locus_tag="STM2385" /EC_number="2.1.1.72" /note="similar to E. coli putative adenine-specific methylase (AAC75390.1); Blastp hit to AAC75390.1 (421 aa), 94% identity in aa 112 - 421" /codon_start=1 /transl_table=11 /product="putative methylase" /protein_id="NP_461327.1" /db_xref="GeneID:1253907" /translation="MDKIFVDEAVSELHTIQDMLRWAVSRFSAANIWYGHGTDNPWDE AVQLVLPSLYLPLDIPEDMRTARLTSSEKHRIVERVIRRINERIPVAYLTNKAWFCGH EFYVDERVLVPRSPIGELINNHFAGLISQQPKYILDMCTGSGCIAIACAYAFPDAEVD AVDISPDALAVAEHNIEEHGLIHHVTPIRSDLFRDLPKVQYDLIVTNPPYVDAEDMSD LPNEYRHEPELGLASGTDGLKLTRRILGNAPDYLSDDGVLICEVGNSMVHLMEQYPDV PFTWLEFDNGGDGVFMLTKAQLLAAREHFNIYKD" misc_feature complement(2495709..2496557) /gene="yfcB" /locus_tag="STM2385" /note="protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific; Region: L3_gln_methyl; TIGR03533" /db_xref="CDD:274633" regulatory complement(2496597..2496602) /regulatory_class="ribosome_binding_site" /gene="yfcB" /locus_tag="STM2385" /note="putative RBS for yfcB; RegulonDB:STMS1H002513" gene 2496745..2497310 /gene="yfcN" /locus_tag="STM2386" /db_xref="GeneID:1253908" regulatory 2496745..2496750 /regulatory_class="ribosome_binding_site" /gene="yfcN" /locus_tag="STM2386" /note="putative RBS for yfcN; RegulonDB:STMS1H002514" CDS 2496759..2497310 /gene="yfcN" /locus_tag="STM2386" /note="similar to E. coli orf, hypothetical protein (AAC75391.1); Blastp hit to AAC75391.1 (183 aa), 93% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="putative Smr domain containing protein" /protein_id="NP_461328.1" /db_xref="GeneID:1253908" /translation="MKKKTSLSEEDQALFRQLMVGTRKIKQDTIVHRPLRKKITEVPT RRLIQEQADASHYFSDEFQPLLNTEGPVKYVREDVSHFELKKMRRGDYSPELFLDLHG LTQLQAKQELGALIAACRREHIFCACVMHGHGKHILKQQTPLWLAQHPHVMAFHQAPK EYGGDAALLVLIEVEEWQPPELP" misc_feature 2496759..2497301 /gene="yfcN" /locus_tag="STM2386" /note="endonuclease SmrB; Region: PRK04946" /db_xref="CDD:235321" gene complement(2497410..2497905) /gene="sixA" /locus_tag="STM2387" /db_xref="GeneID:1253909" CDS complement(2497410..2497895) /gene="sixA" /locus_tag="STM2387" /EC_number="3.1.3.-" /note="similar to E. coli orf, hypothetical protein (AAC75400.1); Blastp hit to AAC75400.1 (161 aa), 89% identity in aa 1 - 161" /codon_start=1 /transl_table=11 /product="phosphohistidine phosphatase" /protein_id="NP_461329.1" /db_xref="GeneID:1253909" /translation="MQVFIMRHGDAALDAASDSVRPLTPCGCDESRLMANWLKGQKVD IERVLVSPFLRAEQTLDVVGDCMNLPAQVDVLPELTPCGDVGLVSAYLQALANEEIGS VLVISHLPLVGYLVSELCPGETPPMFTTSAIANVTLDESGKGTFNWQMSPCNLKMAKA I" misc_feature complement(2497440..2497895) /gene="sixA" /locus_tag="STM2387" /note="phosphohistidine phosphatase SixA; Region: sixA; TIGR00249" /db_xref="CDD:129351" misc_feature complement(order(2497569..2497574,2497731..2497733, 2497872..2497877)) /gene="sixA" /locus_tag="STM2387" /note="catalytic core [active]" /db_xref="CDD:132718" regulatory complement(2497900..2497905) /regulatory_class="ribosome_binding_site" /gene="sixA" /locus_tag="STM2387" /note="putative RBS for sixA; RegulonDB:STMS1H002515" gene complement(2498104..2500265) /gene="yfcX" /locus_tag="STM2388" /db_xref="GeneID:1253910" CDS complement(2498104..2500251) /gene="yfcX" /locus_tag="STM2388" /EC_number="1.1.1.35" /EC_number="4.2.1.17" /note="similar to E. coli putative enzyme (AAC75401.1); Blastp hit to AAC75401.1 (714 aa), 86% identity in aa 1 - 712" /codon_start=1 /transl_table=11 /product="putative dehydrogenase" /protein_id="NP_461330.1" /db_xref="GeneID:1253910" /translation="MTTTSAFMLNVRLDNVAVVAIDVPGEKVNTLKAEFATQVRAILK QIRENKALQGVVFISAKADNFIAGADINMIGHCQNAQEAETLARQGQQLMAEIQALPV PVIAAIHGACLGGGLEMALACHRRICTDDVKTVLGLPEVQLGLLPGSGGTQRLPRLVG VSTALDMILTGKQLRARQALKAGLVDDVVPQTILLEAAVELAKKERLAQRTLPVRERI LAGPLGRALLFRLVRKKTAQKTQGNYPATERIIDVIETGLAQGSSSGYDAEARAFGEL AMTPQSQALRAIFFASTEVKKDPGSDAPPGPLNSVGILGGGLMGGGIAWVTACKGGLP VRIKDINTQGINHALKYSWDLLETKVRRRHIKASERDKQLALISGSTDYRGFSHRDLV IEAVFEDLPLKQQMVAEVEQNCAAHTIFASNTSSLPIGDIAANAARPEQVIGLHFFSP VEKMPLVEVIPHASTSAQTIATTVKLAKKQGKTPIVVSDKAGFYVNRILAPYINEAIR MLTEGERVEHIDAALVKFGFPVGPIQLLDEVGIDTGTKIIPVLEAAYGERFSAPANVV ASILNDDRKGRKNGRGFYLYGEKGRKSKKQVDPAIYKLIGVQGQSRLSAQQVAERCVM LMLNEAARCFDEKVIRSARDGDIGAVFGIGFPPFLGGPFRYMDALGPGEMVATLQRLA ALYGPRYAPCEQLVRMAERREHFWTNGETDQGN" misc_feature complement(2498128..2500251) /gene="yfcX" /locus_tag="STM2388" /note="fatty acid oxidation complex subunit alpha FadJ; Region: fadJ; PRK11154" /db_xref="CDD:236864" gene complement(2500251..2501573) /gene="yfcY" /locus_tag="STM2389" /db_xref="GeneID:1253911" CDS complement(2500251..2501561) /gene="yfcY" /locus_tag="STM2389" /EC_number="2.3.1.16" /note="similar to E. coli putative acyltransferase (AAC75402.1); Blastp hit to AAC75402.1 (436 aa), 93% identity in aa 1 - 436" /codon_start=1 /transl_table=11 /product="putative acetyl-CoA acetyltransferase" /protein_id="NP_461331.2" /db_xref="GeneID:1253911" /translation="MRQALPLVTRQGDRIAIVSGLRTPFARQATAFHGIPAVDLGKMV VGELLARSEIPADAIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATS FQAVANVAESLMAGTIRAGIAGGADSSSVLPIGVSKALARVLVDVNKARTTRQRLTLF SRLRLRDLLPVPPAVAEYSTGLRMGDTAEQMAKTYGITREQQDALAHRSHQRAAQAWA EGKLAEEVMTTYVPPYKNPFAEDNNIRGASTLADYAKLRPAFDRKHGSVTAANSTPLT DGAAAVILMTESRAKELGLRPLGYLRSYAFTAIDVWQDMLLGPAWSTPLALERAGLTM ADLTLFDMHEAFAAQTLANLQLLGSERFAREVLGCAQATGEVDDAKFNVLGGSIAYGH PFAATGARMITQTLHELRRRGGGFGLVTACAAGGLGAAMVLEAE" misc_feature complement(2500254..2501537) /gene="yfcY" /locus_tag="STM2389" /note="3-ketoacyl-CoA thiolase; Reviewed; Region: fadI; PRK08963" /db_xref="CDD:181597" regulatory complement(2500260..2500265) /regulatory_class="ribosome_binding_site" /gene="yfcY" /locus_tag="STM2389" /note="putative RBS for yfcX; RegulonDB:STMS1H002516" regulatory complement(2501568..2501573) /regulatory_class="ribosome_binding_site" /gene="yfcY" /locus_tag="STM2389" /note="putative RBS for yfcY; RegulonDB:STMS1H002517" gene complement(2501739..2502036) /gene="yfcZ" /locus_tag="STM2390" /db_xref="GeneID:1253912" CDS complement(2501739..2502023) /gene="yfcZ" /locus_tag="STM2390" /note="similar to E. coli orf, hypothetical protein (AAC75403.1); Blastp hit to AAC75403.1 (102 aa), 93% identity in aa 9 - 102" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461332.1" /db_xref="GeneID:1253912" /translation="MSKCSADETPVCCCMDVGTIMDNSDCTASYSRVFATRAEAEETL AALTEKARSVESEPCQITPTFTEESEGVRLDIDFVFACEAETLIFQLGLR" misc_feature complement(2501742..2502023) /gene="yfcZ" /locus_tag="STM2390" /note="Uncharacterized conserved protein YfcZ, UPF0381/DUF406 family [Function unknown]; Region: YfcZ; COG3691" /db_xref="CDD:442906" regulatory complement(2502031..2502036) /regulatory_class="ribosome_binding_site" /gene="yfcZ" /locus_tag="STM2390" /note="putative RBS for yfcZ; RegulonDB:STMS1H002518" protein_bind 2502137..2502149 /note="putative binding site for OmpR, RegulonDB: STMS1H000331" /bound_moiety="OmpR" protein_bind 2502249..2502259 /note="putative binding site for OmpR, RegulonDB: STMS1H000329" /bound_moiety="OmpR" gene 2502255..2503701 /gene="fadL" /locus_tag="STM2391" /db_xref="GeneID:1253913" regulatory 2502255..2502263 /regulatory_class="minus_35_signal" /gene="fadL" /locus_tag="STM2391" /note="putative -35_signal for fadL; RegulonDB:STMLTH004541" protein_bind 2502271..2502289 /gene="fadL" /locus_tag="STM2391" /note="putative binding site for FadR, RegulonDB: STMS1H000181" /bound_moiety="FadR" regulatory 2502282..2502290 /regulatory_class="minus_10_signal" /gene="fadL" /locus_tag="STM2391" /note="putative -10_signal for fadL; RegulonDB:STMLTH004541" protein_bind 2502295..2502313 /gene="fadL" /locus_tag="STM2391" /note="putative binding site for FadR, RegulonDB: STMS1H000177" /bound_moiety="FadR" protein_bind 2502343..2502363 /gene="fadL" /locus_tag="STM2391" /note="putative binding site for CRP, RegulonDB: STMS1H000113" /bound_moiety="CRP" protein_bind 2502353..2502365 /gene="fadL" /locus_tag="STM2391" /note="putative binding site for OmpR, RegulonDB: STMS1H000325" /bound_moiety="OmpR" regulatory 2502382..2502387 /regulatory_class="ribosome_binding_site" /gene="fadL" /locus_tag="STM2391" /note="putative RBS for fadL; RegulonDB:STMS1H002519" CDS 2502388..2503701 /gene="fadL" /locus_tag="STM2391" /note="sensitivity to phage T2; similar to E. coli transport of long-chain fatty acids; sensitivity to phage T2 (AAC75404.1); Blastp hit to AAC75404.1 (448 aa), 91% identity in aa 1 - 448" /codon_start=1 /transl_table=11 /product="transport of long-chain fatty acids" /protein_id="NP_461333.1" /db_xref="GeneID:1253913" /translation="MVMSQKTLFTKSALAVAVAIISTQAWSAGFQLNEFSSSGLGRAY SGEGAIADDAGNVSRNPALITMFDRPTFSAGAVYIDPDVNISGTSPSRRTLDADNIAP TAWVPNVHFVAPINDQFGWGASITSNYGLATEFNDTYAGGSVGGTTDLETMNLNLSGA YRLNEAWSFGLGFDAVYARAKIERFAGDLGQLVAAQNPALAPVAGQIPSDTKIAHLNG NQWGFGWNAGILYELDKNNRYALTYRSEVKIDFKGNYSSDLPIAINRFNLPIPTATGG ATQSGYLTLNLPEMWEVSGYNRVAPQWAIHYSLAYTSWSQFQELKAKSTAGDTLFEKH EGFKDAYRIALGTTYYYDDNWTFRTGIAFDDSPVPAQNRSISIPDQDRFWLSAGTTYA FNKDASVDVGVSYMHGQSVKINEGPYQFESEGKAWLFGTNFNYAF" misc_feature 2502394..2503698 /gene="fadL" /locus_tag="STM2391" /note="long-chain fatty acid transporter FadL; Region: PRK10716" /db_xref="CDD:236741" protein_bind 2502403..2502415 /gene="fadL" /locus_tag="STM2391" /note="putative binding site for OmpR, RegulonDB: STMS1H000330" /bound_moiety="OmpR" gene complement(2503762..2504530) /gene="vacJ" /locus_tag="STM2392" /db_xref="GeneID:1253914" CDS complement(2503762..2504517) /gene="vacJ" /locus_tag="STM2392" /note="similar to E. coli lipoprotein precursor (AAC75406.1); Blastp hit to AAC75406.1 (251 aa), 94% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="lipoprotein precursor" /protein_id="NP_461334.1" /db_xref="GeneID:1253914" /translation="MKLRLSALALGTTLLVGCASSGTEQQGRSDPFEGFNRTMYNFNF NVLDPYVVRPVAVAWRDYVPQPARNGLSNFTGNLEEPAIMVNYFLQGDPYQGMVHFTR FFLNTLLGMGGFIDVAGMANPKLQRVEPHRFGSTLGHYGVGYGPYMQLPFYGSFTLRE DGGDMADTLYPVLSWLTWPMSIGKWTIEGIETRAQLLDSDGLLRQSSDPYIMVREAYF QRHDFIANGGKLKPQENPNAQAIQDELKEIDSE" misc_feature complement(2503765..2504517) /gene="vacJ" /locus_tag="STM2392" /note="phospholipid-binding lipoprotein MlaA; Region: PRK15091" /db_xref="CDD:185047" regulatory complement(2504525..2504530) /regulatory_class="ribosome_binding_site" /gene="vacJ" /locus_tag="STM2392" /note="putative RBS for vacJ; RegulonDB:STMS1H002520" gene 2504792..2505747 /gene="yfdC" /locus_tag="STM2393" /db_xref="GeneID:1253915" regulatory 2504792..2504797 /regulatory_class="ribosome_binding_site" /gene="yfdC" /locus_tag="STM2393" /note="putative RBS for yfdC; RegulonDB:STMS1H002521" CDS 2504806..2505747 /gene="yfdC" /locus_tag="STM2393" /note="similar to E. coli putative transport (AAC75407.1); Blastp hit to AAC75407.1 (310 aa), 87% identity in aa 1 - 304" /codon_start=1 /transl_table=11 /product="putative transport" /protein_id="NP_461335.1" /db_xref="GeneID:1253915" /translation="MDSLNDDKINRHSSDLEVESEEKQSGKEIEVDEDRLPSRAMAIH EHIRQDGEKEMERDAMALLWSAIAAGLSMGASLLAKGIFHVQLESVPGGFLLENLGYT FGFIIVIMARQQLFTENTVTAVLPVMQNPTLSNVGLLMRLWGVVLLGNLIGTGVAAWA FEYMPIFDEETRDAFVKIGMEVMKNSPTEMFANAIISGWIIATMVWMFPAAGGAKIVV IILMTWLIALGDTTHIVVGSVEILYLVFNGTLPWSDFLWPFALPTLAGNICGGTFIFA LMSHAQIRNDMSNKRKEEARLRGERLERERKKAEKQR" misc_feature 2504914..2505672 /gene="yfdC" /locus_tag="STM2393" /note="Formate/nitrite transporter FocA, FNT family [Inorganic ion transport and metabolism]; Region: FocA; COG2116" /db_xref="CDD:441719" gene 2505821..2505892 /gene="argW" /locus_tag="STM2394" /db_xref="GeneID:1253916" tRNA 2505821..2505892 /gene="argW" /locus_tag="STM2394" /product="tRNA-Arg" /db_xref="GeneID:1253916" gene complement(2506054..2507005) /gene="pgtE" /locus_tag="STM2395" /db_xref="GeneID:1253917" CDS complement(2506054..2506992) /gene="pgtE" /locus_tag="STM2395" /EC_number="3.4.23.49" /note="phosphoglycerate transport; outer membrane protease E precursor. (SW:PGTE_SALTY)" /codon_start=1 /transl_table=11 /product="outer membrane protein E" /protein_id="NP_461336.1" /db_xref="GeneID:1253917" /translation="MKKHAIAVMMIAVFSESVYAESALFIPDVSPDSVTTSLSVGVLN GKSRELVYDTDTGRKLSQLDWKIKNVATLQGDLSWEPYSFMTLDARGWTSLASGSGHM VDHDWMSSEQPGWTDRSIHPDTSVNYANEYDLNVKGWLLQGDNYKAGVTAGYQETRFS WTARGGSYIYDNGRYIGNFPHGVRGIGYSQRFEMPYIGLAGDYRINDFECNVLFKYSD WVNAHDNDEHYMRKLTFREKTENSRYYGASIDAGYYITSNAKIFAEFAYSKYEEGKGG TQIIDKTSGDTAYFGGDAAGIANNNYTVTAGLQYRF" misc_feature complement(2506057..2506992) /gene="pgtE" /locus_tag="STM2395" /note="omptin family outer membrane protease; Region: PRK10993" /db_xref="CDD:236813" regulatory complement(2507000..2507005) /regulatory_class="ribosome_binding_site" /gene="pgtE" /locus_tag="STM2395" /note="putative RBS for pgtE; RegulonDB:STMS1H002523" gene complement(2507260..2508512) /gene="pgtA" /locus_tag="STM2396" /db_xref="GeneID:1253918" CDS complement(2507260..2508507) /gene="pgtA" /locus_tag="STM2396" /note="phosphoglycerate transport; phosphoglycerate transport system transcriptional regulatory protein PGTA. (SW:PGTA_SALTY)" /codon_start=1 /transl_table=11 /product="activator protein" /protein_id="NP_461337.1" /db_xref="GeneID:1253918" /translation="MLNDECSILLIDDDVDVLDAYTQMLEQAGYRVRGFTHPFEAKEW VKADWEGIVLSDVCMPGCSGIDLMTLFHQDDDQLPILLITGHGDVPMAVDAVKKGAWD FLQKPVDPGKLLILIEDALRQRRSVIARRQYCQQTLQVELIGRSEWMNQFRQRLQQLA ETDIAVWFYGEHGTGRMTGARYLHQLGRNAKGPFVRYELTPENAGQLETFIDQAQGGT LVLSHPEYLTREQQHHLARLQSLEHRPFRLVGVGSASLVEQAAANQIAAELYYCFAMT QIACQSLSQRPDDIEPLFRHYLRKACLRLNHPVPEIAGELLKGIMRRAWPSNVRELAN AAELFAVGVLPLAETVNPQLLLQEPTPLDRRVEEYERQIITEALNIHQGRINEVAEYL QIPRKKLYLRMKKYGLSKEHYKF" misc_feature complement(2507287..2508450) /gene="pgtA" /locus_tag="STM2396" /note="DNA-binding transcriptional response regulator, NtrC family, contains REC, AAA-type ATPase, and a Fis-type DNA-binding domains [Signal transduction mechanisms]; Region: AtoC; COG2204" /db_xref="CDD:441806" gene complement(2508497..2510509) /gene="pgtB" /locus_tag="STM2397" /db_xref="GeneID:1253919" CDS complement(2508497..2510503) /gene="pgtB" /locus_tag="STM2397" /EC_number="2.7.3.-" /note="phosphoglycerate transport; phosphoglycerate transport system sensor protein PGTB. (SW:PGTB_SALTY)" /codon_start=1 /transl_table=11 /product="protein for signal transmission" /protein_id="NP_461338.1" /db_xref="GeneID:1253919" /translation="MKGRLLQRLRQLSISNSLRGAFLTGALLTLIVSMVSLYSWHEQS SQVRYSLDEYFPRIHSAFLIEGNLNLAVDQLNEFLLAPNTTVRLQLRTQIIQHLDKIE RLSQGLQLAERRQLAVILQDSRTLLAELDNALYNMFLVREKVSELSARIDWLHDDFTT ELNSLVQDFTWQQGTLLDQIEANQGDAAQYLQRSREVQNEQQQVYTLARIENQIVDDL RDRLNELKSGNNDGMLVETHIRYLENLKKTADENIRALDDWPSTITLRQTIDELLEIG MVKNKMPDTMRDYVAAQKALLDASRAREATLGRFRTLLEAQLGSSHQQMQTFNQRLEQ IVRVSGGLILVATLLALLLAWGLNHYFIRSRLVKRFTALNQAVVQIGLGRTDSTIPVY GRDELGRIARLLRHTLGQLNMQRRQLEQEVAERKEIEADLRAMQDELIQTAKLAVVGQ TMTTLAHEINQPLNALSMYLFTAGRAIEQGQSGQARNTLTKAEGLINRIDAIIRSLRQ FTRRAELETPLYPVDLRQTFVAAWELLAMRHQSRQGALSLPTDTVWVSGDEVRIQQVL VNVLANALDACSHDAVIAVTWQTQGEALEVYIADNGPGWPVALLPSLLKPFTTSKAVG LGIGLSISVSLMAQMKGDLRLASTLTRNACVVLQFSVTDVDDVE" misc_feature complement(2508527..2510479) /gene="pgtB" /locus_tag="STM2397" /note="Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]; Region: COG4192" /db_xref="CDD:443346" regulatory complement(2508507..2508512) /regulatory_class="ribosome_binding_site" /gene="pgtA" /locus_tag="STM2396" /note="putative RBS for pgtA; RegulonDB:STMS1H002524" gene complement(2510500..2511698) /gene="pgtC" /locus_tag="STM2398" /db_xref="GeneID:1253920" CDS complement(2510500..2511693) /gene="pgtC" /locus_tag="STM2398" /note="phosphoglycerate transport; phosphoglycerate transport regulatory protein PGTC precursor. (SW:PGTC_SALTY)" /codon_start=1 /transl_table=11 /product="protein for signal transmission" /protein_id="NP_461339.1" /db_xref="GeneID:1253920" /translation="MFGSCQAYSRELVMATTFSPSATAWIIQRWQTEPGSVMIRTLNR TSGSLEQLLDTANAENVDLILTSSPMLLQHLQEHQKLALLDSAPAASQKLVPRSIRST SVAVAVSGFGLLINRSALAARHLPPPADWQDMGLPSYQGALLMSSPSRSDTNHLMVES LLQQKGWTAGWATLLAISGNLVTISSRSFGVADKIKSGLGVAGPVIDNYANLLLNDPN LAFTYFPYSAVSPTYVAVLKNSRHADEARAFIHYLLSPKGQRILADANTGKYPVAPLS ADNPRAAQQQRLMAQPPLNYRLILKRQQLVQRMFDTAISFRLAQLKDAWRALHSAETR LKRPLPEIRALLTSVPVDAASSEDETWLAQFDNKSFAEQKMMEWQIWFLNNQRLAIHK LEELK" misc_feature complement(2510755..2511618) /gene="pgtC" /locus_tag="STM2398" /note="ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: AfuA; COG1840" /db_xref="CDD:441445" regulatory complement(2510504..2510509) /regulatory_class="ribosome_binding_site" /gene="pgtC" /locus_tag="STM2398" /note="putative RBS for pgtB; RegulonDB:STMS1H002525" regulatory complement(2511693..2511698) /regulatory_class="ribosome_binding_site" /gene="pgtC" /locus_tag="STM2398" /note="putative RBS for pgtC; RegulonDB:STMS1H002526" gene 2512122..2513520 /gene="pgtP" /locus_tag="STM2399" /db_xref="GeneID:1253921" regulatory 2512122..2512127 /regulatory_class="ribosome_binding_site" /gene="pgtP" /locus_tag="STM2399" /note="putative RBS for pgtP; RegulonDB:STMS1H002527" CDS 2512129..2513520 /gene="pgtP" /locus_tag="STM2399" /note="phosphoglycerate transport; phosphoglycerate transporter protein. (SW:PGTP_SALTY)" /codon_start=1 /transl_table=11 /product="transporter protein" /protein_id="NP_461340.1" /db_xref="GeneID:1253921" /translation="MLTILKTGQSAHKVPPEKVQATYGRYRIQALLSVFLGYLAYYIV RNNFTLSTPYLKEQLDLSATQIGLLSSCMLIAYGISKGVMSSLADKASPKVFMACGLV LCAIVNVGLGFSSAFWIFAALVVFNGLFQGMGVGPSFITIANWFPRRERGRVGAFWNI SHNVGGGIVAPIVGAAFAILGSEHWQSASYIVPACVAVIFALIVLVLGKGSPRKEGLP SLEQMMPEEKVVLKTKNTAKAPENMSAWQIFCTYVLRNKNAWYISLVDVFVYMVRFGM ISWLPIYLLTVKHFSKEQMSVAFLFFEWAAIPSTLLAGWLSDKLFKGRRMPLAMICMA LIFVCLIGYWKSESLLMVTIFAAIVGCLIYVPQFLASVQTMEIVPSFAVGSAVGLRGF MSYIFGASLGTSLFGVMVDKLGWYGGFYLLMGGIVCCILFCYLSHRGALELERQRQNA LHNQDSLQLADAQ" misc_feature 2512207..2513439 /gene="pgtP" /locus_tag="STM2399" /note="Glycerol-3-Phosphate Transporter of the Major Facilitator Superfamily of transporters; Region: MFS_GlpT; cd17345" /db_xref="CDD:340903" misc_feature order(2512249..2512254,2512261..2512266,2512273..2512275, 2512369..2512371,2512519..2512524,2512528..2512536, 2512543..2512545,2512603..2512605,2512612..2512617, 2512624..2512626,2512924..2512926,2512933..2512938, 2512945..2512953,2512960..2512962,2513044..2513046, 2513056..2513058,2513212..2513217,2513227..2513229, 2513239..2513241,2513287..2513289,2513296..2513301, 2513308..2513313,2513320..2513322) /gene="pgtP" /locus_tag="STM2399" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340903" gene complement(2513796..2514053) /locus_tag="STM2400" /db_xref="GeneID:1253922" CDS complement(2513796..2514038) /locus_tag="STM2400" /note="similar to E. coli orf, hypothetical protein (AAC75436.1); Blastp hit to AAC75436.1 (80 aa), 67% identity in aa 1 - 80" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461341.1" /db_xref="GeneID:1253922" /translation="MIYLWTFLAISILAVSGYIGQVMGAFSAVSSFTGMVILAALIYL LNVWLQDGDDIVSGLLLFLAPACGLIIRFMVGYGKR" misc_feature complement(2513799..2514038) /locus_tag="STM2400" /note="Protein of unknown function (DUF2545); Region: DUF2545; pfam10810" /db_xref="CDD:431506" regulatory complement(2514048..2514053) /regulatory_class="ribosome_binding_site" /locus_tag="STM2400" /note="putative RBS for STM2400; RegulonDB:STMS1H002528" gene 2514550..2515480 /gene="ddg" /locus_tag="STM2401" /db_xref="GeneID:1253923" regulatory 2514550..2514555 /regulatory_class="ribosome_binding_site" /gene="ddg" /locus_tag="STM2401" /note="putative RBS for ddg; RegulonDB:STMS1H002529" CDS 2514560..2515480 /gene="ddg" /locus_tag="STM2401" /note="similar to E. coli putative heat shock protein (AAC75437.1); Blastp hit to AAC75437.1 (328 aa), 90% identity in aa 23 - 328" /codon_start=1 /transl_table=11 /product="cold shock-induced palmitoleoyl transferase" /protein_id="NP_461342.1" /db_xref="GeneID:1253923" /translation="MFPQSKFSRAFLHPRYWLTWFGVGILWLLVQLPYPVLRFLGTRT GKLARPFLKRRESIAQKNIELCFPTLSREEREKLIAENFHSLGMALLETGMAWFWPDS RVRKWFDVDGLDNLTRAQAQNRGVMVVGVHFMSLELGGRVMGLCQPMMATYRPHNNPL MEWVQTRGRMRSNKAMIGRNNLRGIVGALKKGEAVWFAPDQDYGPKGSSFAPFFAVEN VATTNGTYVLSRLSGAAMLTVTMVRKSDNSGYRLYITPEMEGYPADENQAAAYMNKII EKEIMRAPEQYLWIHRRFKTRPLGEASLYI" misc_feature 2514560..2515474 /gene="ddg" /locus_tag="STM2401" /note="kdo(2)-lipid IV(A) palmitoleoyltransferase; Region: PRK08025" /db_xref="CDD:181200" misc_feature order(2514953..2514955,2514962..2514964,2514968..2514970, 2515016..2515027,2515160..2515168) /gene="ddg" /locus_tag="STM2401" /note="putative acyl-acceptor binding pocket [active]" /db_xref="CDD:153246" gene complement(2516004..2517251) /gene="yfdZ" /locus_tag="STM2402" /db_xref="GeneID:1253924" CDS complement(2516004..2517242) /gene="yfdZ" /locus_tag="STM2402" /EC_number="2.6.1.17" /note="similar to E. coli putative aminotransferase (AAC75438.1); Blastp hit to AAC75438.1 (412 aa), 95% identity in aa 1 - 412" /codon_start=1 /transl_table=11 /product="putative aminotransferase" /protein_id="NP_461343.1" /db_xref="GeneID:1253924" /translation="MADFRPERRFTRIDRLPPYVFNITAELKMAARRRGEDIIDFSMG NPDGATPPHIVEKLCTVAQRPDTHGYSTSRGIPRLRRAISHWYQERYDVDIDPETEAI VTIGSKEGLAHLMLATLDHGDTVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVDFFNE LERAIRESYPKPKMMILGFPSNPTAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVY DGWKAPSIMQVPGARDVAVEFFTLSKSYNMAGWRIGFMVGNKTLVSALARIKSYHDYG TFTPLQVAAIAALEGDQQCVRDIAEQYKRRRDVLVKGLHEAGWMVEMPKASMYVWAKI PEQYAAMGSLEFAKKLLNEAKVCVSPGIGFGDYGDTHVRFALIENRDRIRQAVRGIKA MFRADGVLPSHPKPVEASTE" misc_feature complement(2516040..2517221) /gene="yfdZ" /locus_tag="STM2402" /note="aminotransferase; Validated; Region: PRK08175" /db_xref="CDD:181268" regulatory complement(2517246..2517251) /regulatory_class="ribosome_binding_site" /gene="yfdZ" /locus_tag="STM2402" /note="putative RBS for yfdZ; RegulonDB:STMS1H002530" gene complement(2517963..2518944) /gene="glk" /locus_tag="STM2403" /db_xref="GeneID:1253925" CDS complement(2517963..2518928) /gene="glk" /locus_tag="STM2403" /EC_number="2.7.1.2" /note="similar to E. coli glucokinase (AAC75447.1); Blastp hit to AAC75447.1 (321 aa), 93% identity in aa 1 - 321" /codon_start=1 /transl_table=11 /product="glucokinase" /protein_id="NP_461344.1" /db_xref="GeneID:1253925" /translation="MTKYALVGDVGGTNARLALCDIASGEISQAKTYSGLDYPSLEAV VRVYLDEHSVSVEDGCIAIACPITGDWVAMTNHTWAFSIAEMKKNLGFSHLEIINDFT AVSMAIPMLKKEHLIQFGGGEPVDGKPIAVYGAGTGLGVAHLVHVDKRWISLPGEGGH VDFAPNSEEEAMILEILRAEIGHVSAERVLSGPGLVNLYRAIVKSDNRLPENLRPKDI TERALADSCIDCRRALSLFCVIMGRFGGDLALTMGTFGGVYIAGGIVPRFLEFFKASG FRGGFEDKGRFKDYVHGIPVYLIVHDNPGLLGSGAHLRQTLGHIL" misc_feature complement(2517981..2518925) /gene="glk" /locus_tag="STM2403" /note="glucokinase; Provisional; Region: glk; PRK00292" /db_xref="CDD:234716" regulatory complement(2518939..2518944) /regulatory_class="ribosome_binding_site" /gene="glk" /locus_tag="STM2403" /note="putative RBS for glk; RegulonDB:STMS1H002531" gene 2519120..2520367 /locus_tag="STM2404" /db_xref="GeneID:1253926" regulatory 2519120..2519125 /regulatory_class="ribosome_binding_site" /locus_tag="STM2404" /note="putative RBS for STM2404; RegulonDB:STMS1H002532" CDS 2519132..2520367 /locus_tag="STM2404" /note="similar to E. coli orf, hypothetical protein (AAC75448.1); Blastp hit to AAC75448.1 (418 aa), 80% identity in aa 1 - 408" /codon_start=1 /transl_table=11 /product="putative chloride channel permease" /protein_id="NP_461345.1" /db_xref="GeneID:1253926" /translation="MFHPRARTMLLLSLPALIIGVASSLVLIAAMKVASVFQQFLWQR LPTSIGIAYDSPFWIVGMLTLTGIVVGLIIRYSPGHAGPDPAIEPLISMPVSPSALPG LLLALIIGLAGGVSLGPEHPIMTINIALAAAFGSRLFPRITALDWTILASAGTIGALF GTPVAAALIFSQTLSGSNDIPMWDRLFAPLMAAAAGSLTTSLFFHPHFSLPIAHYTQM RLVDIASGAIVAAIAIAAGMVAVWCLPRLHELLHRLKNPVLILGIGGFILGILGVIGG PLTLFKGLDEMQQMAFSQTLGAGDYFTLAVVKLAALVIAAASGFRGGRIFPAVFIGAA LGLMLHAHVEAVPAAITVSCAILGLVLVVTRDGWLSLFMAAVVVPDTNLLPLLCIVML PAWLLLAGKPLLAANRHEP" misc_feature 2519132..2520364 /locus_tag="STM2404" /note="putative ion channel protein; Provisional; Region: PRK03655" /db_xref="CDD:235148" misc_feature order(2519384..2519398,2519483..2519497,2520098..2520112) /locus_tag="STM2404" /note="Cl- selectivity filter [active]" /db_xref="CDD:238233" misc_feature order(2519387..2519389,2519393..2519395,2519489..2519494, 2520098..2520106) /locus_tag="STM2404" /note="Cl- binding residues [ion binding]; other site" /db_xref="CDD:238233" misc_feature 2519489..2519491 /locus_tag="STM2404" /note="pore gating glutamate residue [active]" /db_xref="CDD:238233" misc_feature order(2519621..2519623,2519648..2519650,2519702..2519704, 2519723..2519725,2520224..2520226,2520233..2520235, 2520257..2520259,2520281..2520283,2520302..2520307) /locus_tag="STM2404" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238233" gene complement(2520387..2522046) /locus_tag="STM2405" /db_xref="GeneID:1253927" CDS complement(2520387..2522039) /locus_tag="STM2405" /EC_number="4.1.1.1" /note="similar to E. coli acetolactate synthase III, valine sensitive, large subunit (AAC73188.1); Blastp hit to AAC73188.1 (604 aa), 24% identity in aa 37 - 505" /codon_start=1 /transl_table=11 /product="putative thiamine pyrophosphate enzymes" /protein_id="NP_461346.1" /db_xref="GeneID:1253927" /translation="MQNPYTVADYLLDRLAGCGIGHLFGVPGDYNLQFLDHVIDHPTL RWVGCANELNAAYAADGYARMSGAGALLTTFGVGELSAINGIAGSYAEYVPVLHIVGA PCSAAQQRGELMHHTLGDGDFRHFYRMSQAISAASAILDEQNACFEIDRVLGEMLAAR RPGYIMLPADVAKKTAIPPTQALALPVHEAQSGVETAFRYHARQCLMNSRRIALLADF LAGRFGLRPLLQRWMAETPIAHATLLMGKGLFDEQHPNFVGTYSAGASSKEVRQAIED ADRVICVGTRFVDTLTAGFTQQLPAERTLEIQPYASRIGETWFNLPMAQAVSTLRELC LECAFAPPPTRSAGQPVRIDKGELTQESFWQTLQQYLKPGDIILVDQGTAAFGAAALS LPDGAEVVLQPLWGSIGYSLPAAFGAQTACPDRRVILIIGDGAAQLTIQEMGSMLRDG QAPVILLLNNDGYTVERAIHGAAQRYNDIASWNWTQIPPALNAAQQAECWRVTQAIQL AEVLERLARPQRLSFIEVMLPKADLPELLRTVTRALEARNGG" misc_feature complement(2520411..2522039) /locus_tag="STM2405" /note="TPP-dependent 2-oxoacid decarboxylase, includes indolepyruvate decarboxylase [Carbohydrate transport and metabolism, Coenzyme transport and metabolism, General function prediction only]; Region: PDC1; COG3961" /db_xref="CDD:443161" regulatory complement(2522041..2522046) /regulatory_class="ribosome_binding_site" /locus_tag="STM2405" /note="putative RBS for STM2405; RegulonDB:STMS1H002533" gene 2522205..2523217 /locus_tag="STM2406" /db_xref="GeneID:1253928" regulatory 2522205..2522210 /regulatory_class="ribosome_binding_site" /locus_tag="STM2406" /note="putative RBS for STM2406; RegulonDB:STMS1H002534" CDS 2522219..2523217 /locus_tag="STM2406" /note="similar to E. coli putative reductase (AAC76037.1); Blastp hit to AAC76037.1 (346 aa), 60% identity in aa 1 - 335" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_461347.1" /db_xref="GeneID:1253928" /translation="MIYQPDENRYHTMEYRRCGRSGVKLPAISLGLWHNFGDTTRVEN SRALLQRAFDLGITHFDLANNYGPPPGSAECNFGRILQEDFLPWRDELIISTKAGYTM WDGPYGDWGSRKYLIASLDQSLKRMGLEYVDIFYHHRPDPETPLKETMKALDHLVRHG KALYVGISNYPADLARQAIDILEDLGTPCLIHQPKYSLFERWVEDGLLALLQEKGVGS IAFSPLAGGQLTDRYLNGIPEDSRAASGSRFLKPEQITADKLEKVRRLNELAARRGQK LSQMALAWVLRNDNVTSVLIGASKPSQIEDAVGMLANRRFSAAECAEIDAILEGRF" misc_feature 2522258..2523184 /locus_tag="STM2406" /note="Salmonella enterica aldo-keto reductase (AKR) and similar protein; Region: AKR_AKR14A2; cd19151" /db_xref="CDD:381377" misc_feature order(2522309..2522317,2522321..2522323,2522399..2522401, 2522414..2522416,2522507..2522509,2522630..2522632, 2522720..2522725,2522795..2522797,2522879..2522899, 2522906..2522908,2522912..2522914,2523050..2523052, 2523101..2523115,2523125..2523127,2523134..2523136) /locus_tag="STM2406" /note="active site" /db_xref="CDD:381377" misc_feature order(2522399..2522401,2522414..2522416,2522507..2522509, 2522630..2522632) /locus_tag="STM2406" /note="catalytic tetrad [active]" /db_xref="CDD:381377" gene 2523318..2523657 /gene="ypeC" /locus_tag="STM2407" /db_xref="GeneID:1253929" regulatory 2523318..2523323 /regulatory_class="ribosome_binding_site" /gene="ypeC" /locus_tag="STM2407" /note="putative RBS for ypeC; RegulonDB:STMS1H002535" CDS 2523331..2523657 /gene="ypeC" /locus_tag="STM2407" /note="similar to E. coli orf, hypothetical protein (AAC75449.1); Blastp hit to AAC75449.1 (108 aa), 91% identity in aa 1 - 108" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461348.1" /db_xref="GeneID:1253929" /translation="MFRSLILAAALLAFTPLAANAGEITLLPSIKLQIGDRDDYGNYW DGGRWRDRDYWHNHYEWRKNRWWRHDNGYHRGWDKRKAYERGYREGWRDRDDHRGRGR GHKHHH" misc_feature 2523397..2523648 /gene="ypeC" /locus_tag="STM2407" /note="Protein of unknown function (DUF2502); Region: DUF2502; pfam10697" /db_xref="CDD:431443" gene complement(2523718..2524969) /gene="mntH" /locus_tag="STM2408" /db_xref="GeneID:1253930" CDS complement(2523718..2524959) /gene="mntH" /locus_tag="STM2408" /note="Nramp family; manganese transport protein MNTH. (SW:MNTH_SALTY)" /codon_start=1 /transl_table=11 /product="manganese/divalent cation transport protein" /protein_id="NP_461349.1" /db_xref="GeneID:1253930" /translation="MTDNRVENSSGRAARKLRLALMGPAFIAAIGYIDPGNFATNIQA GASFGYQLLWVVVWANLMAMLIQILSAKLGIATGKNLAEQIRDHYPRPVVWFYWVQAE IIAMATDLAEFIGAAIGFKLILGVSLLQGAVLTGIATFLILMLQRRGQKPLEKVIGGL LLFVAAAYIVELFFSQPDMAQLGKGMVIPALPNPEAVFLAAGVLGATIMPHVIYLHSS LTQHLHGGTRQQRYSATKWDVAIAMTIAGFVNLAMMATAAAAFHFSGHTGIADLDQAY LTLEPLLSHAAATVFGLSLVAAGLSSTVVGTLAGQVVMQGFVRFHIPLWVRRTITMLP SFIVILMGLDPTRILVMSQVLLSFGIALALVPLLIFTSNATLMGELVNTRRVKQVGWI IVVLVVALNIWLLVGTVMGLS" misc_feature complement(2523724..2524959) /gene="mntH" /locus_tag="STM2408" /note="divalent metal cation transporter MntH; Region: PRK00701" /db_xref="CDD:234815" regulatory complement(2524964..2524969) /regulatory_class="ribosome_binding_site" /gene="mntH" /locus_tag="STM2408" /note="putative RBS for mntH; RegulonDB:STMS1H002536" protein_bind 2525169..2525189 /note="putative binding site for CRP, RegulonDB: STMS1H000045" /bound_moiety="CRP" gene 2525190..2526504 /gene="nupC" /locus_tag="STM2409" /db_xref="GeneID:1253931" regulatory 2525190..2525198 /regulatory_class="minus_35_signal" /gene="nupC" /locus_tag="STM2409" /note="putative -35_signal for nupC; RegulonDB:STMLTH004542" regulatory 2525214..2525222 /regulatory_class="minus_10_signal" /gene="nupC" /locus_tag="STM2409" /note="putative -10_signal for nupC; RegulonDB:STMLTH004542" protein_bind 2525222..2525234 /gene="nupC" /locus_tag="STM2409" /note="putative binding site for CRP, RegulonDB: STMS1H000097" /bound_moiety="CRP" regulatory 2525291..2525296 /regulatory_class="ribosome_binding_site" /gene="nupC" /locus_tag="STM2409" /note="putative RBS for nupC; RegulonDB:STMS1H002537" CDS 2525302..2526504 /gene="nupC" /locus_tag="STM2409" /note="similar to E. coli permease of transport system for 3 nucleosides (AAC75452.1); Blastp hit to AAC75452.1 (400 aa), 98% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="NUP family nucleoside transport protein" /protein_id="NP_461350.1" /db_xref="GeneID:1253931" /translation="MDRVLHFVLALAVVAVLALLVSSDRKKIRIRYVIQLLVIEVLLA WFFLNSDVGLGFVKGFSEMFEKLLGFANEGTNFVFGSMNDQGLAFFFLKVLCPIVFIS ALIGILQHIRVLPVVIRAIGFLLSKVNGMGKLESFNAVSSLILGQSENFIAYKDILGK MSRNRMYTMAATAMSTVSMSIVGAYMTMLDPKYVVAALVLNMFSTFIVLSLINPYVVD ASEENIQMSNLHEGQSFFEMLGEYILAGFKVAIIVAAMLIGFIALIAALNALFATVTG WFGYSISFQGILGYIFYPVAWVMGVPSSEALQVGSIMATKLVSNEFVAMMDLQKIAST LSPRAEGIISVFLVSFANFSSIGIIAGAIKGLNEEQGNVVSRFGLKLVYGSTLVSVLS ASIAALVL" misc_feature 2525365..2526501 /gene="nupC" /locus_tag="STM2409" /note="Nucleoside permease NupC [Nucleotide transport and metabolism]; Region: NupC; COG1972" /db_xref="CDD:441575" gene complement(2526557..2528746) /gene="yfeA" /locus_tag="STM2410" /db_xref="GeneID:1253932" CDS complement(2526557..2528746) /gene="yfeA" /locus_tag="STM2410" /note="diguanylate cyclase/phosphodiesterase domain 2; similar to E. coli orf, hypothetical protein (AAC75454.1); Blastp hit to AAC75454.1 (768 aa), 68% identity in aa 45 - 766" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase domain 1 containing protein" /protein_id="NP_461351.1" /db_xref="GeneID:1253932" /translation="MPDKCNVLKNIKIFLLAFCLTVPAILLSRLISPRATIDSSYIFL AWLPLCVMFSVLFLFGRRGVAPMVGGMMLTNEWNFHLPLPQAMVLLFCQTFPVLLVCA IVRWQLGARWRYGIPNQGIWLRVFWLGLMTPFGIKISMHLAGHYLAFPVTISTFFGTG TAIFSIVDLLSLISAALIFTLFFYYPLRMIVSPHYMRIFWRRDVAPYLAKEKRLFTLL WFATLATLLAVLCTPFETKYIAGYLVPVLFIGFTIGVGKISYPLLNFSWALTALFLLS YNRNFLQGVGSEYSLAFILSVLISFSICLLYMARINQRSEWLNRQWHSQALTDPLTQL PNLRALEQFLLQDAGQSVCYLRMENLEFLSRHYGMQMRVHCEREVFRMLQPLLLEKEK IFHLPGSELLLVLTGPETEARLQYMLNVLNNRKIYWNNTGLDMEYGASWGTFDGRQET LQPLLGQLSWLAEQSCSHRRVLALTQSIEAASGQTTERVLRLQKIRQALERGALVLYA QPIRDAQGKGYDEILTRLRCDDGIMMPNQFIPLIAQFNLSIRFDMQVMEALLQWLSAH PSAEQGARFSVNLMPLTLLQKETASRIMQLFKRYGVPPASVIIEITEEQAFSHSEISM HNINQLRKFGLKIAIDDFGTGYANYERLKRLKADIIKIDGCFVKDILTDSLDAMIVKS ITDLAKAKSLSVVAEFVETPAQRDLLLQLGVHSLQGYLIGRPRPLGK" misc_feature complement(2526566..2528260) /gene="yfeA" /locus_tag="STM2410" /note="EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) [Signal transduction mechanisms]; Region: EAL; COG2200" /db_xref="CDD:441802" misc_feature complement(2526566..2527264) /gene="yfeA" /locus_tag="STM2410" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; Region: EAL; cd01948" /db_xref="CDD:238923" gene complement(2528938..2529010) /gene="alaX" /locus_tag="STM2411" /db_xref="GeneID:1253933" tRNA complement(2528938..2529010) /gene="alaX" /locus_tag="STM2411" /product="tRNA-Ala" /db_xref="GeneID:1253933" gene complement(2529056..2529128) /gene="alaW" /locus_tag="STM2412" /db_xref="GeneID:1253934" tRNA complement(2529056..2529128) /gene="alaW" /locus_tag="STM2412" /product="tRNA-Ala" /db_xref="GeneID:1253934" gene 2529340..2529714 /gene="yfeC" /locus_tag="STM2413" /db_xref="GeneID:1253935" regulatory 2529340..2529345 /regulatory_class="ribosome_binding_site" /gene="yfeC" /locus_tag="STM2413" /note="putative RBS for yfeC; RegulonDB:STMS1H002538" CDS 2529352..2529714 /gene="yfeC" /locus_tag="STM2413" /note="similar to E. coli orf, hypothetical protein (AAC75455.1); Blastp hit to AAC75455.1 (119 aa), 79% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="putative negative regulator" /protein_id="NP_461352.1" /db_xref="GeneID:1253935" /translation="MFKERMTPEELANLTGYSRQTINKWVRKEGWATSPKPGVQGGKA RLVHVNEQVREYIRSAERSVDHHADTFTPASNASLEALLMTLAKEMTSSEQKQFTSLL VREGITGLLQRLGIRDSK" misc_feature 2529367..2529708 /gene="yfeC" /locus_tag="STM2413" /note="Putative transcription regulator (DUF1323); Region: DUF1323; pfam07037" /db_xref="CDD:399786" gene 2529716..2530108 /gene="yfeD" /locus_tag="STM2414" /db_xref="GeneID:1253936" CDS 2529716..2530108 /gene="yfeD" /locus_tag="STM2414" /note="similar to E. coli orf, hypothetical protein (AAC75456.1); Blastp hit to AAC75456.1 (130 aa), 70% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="putative negative regulator" /protein_id="NP_461353.1" /db_xref="GeneID:1253936" /translation="MKRLRSKMTTEELAECLGVARQTVNRWIREQHWKTEKFPGVKGG RARLIHIDASVREFILNIPAFRKLPAFYQAEEAFAEYANAAHSHAYRQIIDAVENMSA QEQEKLALFLSREGIRGFLTRLGINEAD" misc_feature 2529737..2530099 /gene="yfeD" /locus_tag="STM2414" /note="Putative transcription regulator (DUF1323); Region: DUF1323; pfam07037" /db_xref="CDD:399786" gene complement(2530162..2531588) /gene="gltX" /locus_tag="STM2415" /db_xref="GeneID:1253937" CDS complement(2530162..2531577) /gene="gltX" /locus_tag="STM2415" /EC_number="6.1.1.17" /note="similar to E. coli glutamate tRNA synthetase, catalytic subunit (AAC75457.1); Blastp hit to AAC75457.1 (471 aa), 95% identity in aa 1 - 471" /codon_start=1 /transl_table=11 /product="glutamate tRNA synthetase, catalytic subunit" /protein_id="NP_461354.1" /db_xref="GeneID:1253937" /translation="MKIKTRFAPSPTGYLHVGGARTALYSWLFARHHGGEFVLRIEDT DLERSTPEAIEAIMDGMNWLNLEWDEGPYFQTKRFDRYNAVIDEMLEAGTAYKCYCSK ERLEQLREDQMAKGEKPRYDGRCRHSHEHHADDEPCVVRFANPQDGSVIFDDQIRGPI EFSNQELDDLIIRRTDGSPTYNFCVVVDDWDMEITHVIRGEDHINNTPRQINILKALN APVPMYAHVSMINGDDGKKLSKRHGAVSVMQYRDDGYLPEALLNYLVRLGWSSGDQEI FTREEMIKLFSLGAVSKSASAFNTDKLLWLNHHYINTLAPEYVATHLQWHIEQENIDT RNGPQLAELVKLLGERCKTLKEMAQSCRYFYEDFSEFDADAAKKHLRPVARQPLEVVR DKLSAITDWSAENVHHAIQATADELEVGMGKVGMPLRVAVTGAGQSPALDVTVHAIGK TRSIERINKALGFIAERESQQ" misc_feature complement(2530180..2531574) /gene="gltX" /locus_tag="STM2415" /note="glutamyl-tRNA synthetase, bacterial family; Region: gltX_bact; TIGR00464" /db_xref="CDD:273092" regulatory complement(2531583..2531588) /regulatory_class="ribosome_binding_site" /gene="gltX" /locus_tag="STM2415" /note="putative RBS for gltX; RegulonDB:STMS1H002539" gene 2531834..2531906 /gene="valU" /locus_tag="STM2416" /db_xref="GeneID:1253938" tRNA 2531834..2531906 /gene="valU" /locus_tag="STM2416" /product="tRNA-Val" /db_xref="GeneID:1253938" gene 2531955..2532027 /gene="valX" /locus_tag="STM2417" /db_xref="GeneID:1253939" tRNA 2531955..2532027 /gene="valX" /locus_tag="STM2417" /product="tRNA-Val" /db_xref="GeneID:1253939" gene 2532072..2532144 /gene="valY" /locus_tag="STM2418" /db_xref="GeneID:1253940" tRNA 2532072..2532144 /gene="valY" /locus_tag="STM2418" /product="tRNA-Val" /db_xref="GeneID:1253940" gene 2532152..2532224 /gene="lysV" /locus_tag="STM2419" /db_xref="GeneID:1253941" tRNA 2532152..2532224 /gene="lysV" /locus_tag="STM2419" /product="tRNA-Lys" /db_xref="GeneID:1253941" gene complement(2532393..2533356) /gene="xapR" /locus_tag="STM2420" /db_xref="GeneID:1253942" CDS complement(2532393..2533277) /gene="xapR" /locus_tag="STM2420" /note="LysR family; similar to E. coli regulator for xapA (AAC75458.1); Blastp hit to AAC75458.1 (294 aa), 80% identity in aa 1 - 293" /codon_start=1 /transl_table=11 /product="regulator for XapA" /protein_id="NP_461355.1" /db_xref="GeneID:1253942" /translation="MERAHRIDLKLLRYFLAVAEELHFGRAAARLNMSQPPLSIHIKE LEQQLGTLLFIRHSRSVALTHAGKVLMEESRRLLASANQALARVEQIGRGEAGRIELG VVGTALWGRMRPAMRHFLKANPNVEVLFREKSPGMQMALLERRELDAGIWRMAIEPAV GFTSIRLHESAFMVAVPEDHDLASRDSVPLAALRNEYFVTLPSVHSDWGFLQRVCQQA GFSPMIIREVVEPQTVLAMISMGIGITLMADGYAQMSWPGVVFRPLEERIPADLYIVY DQQQATPALEKLVAALTV" misc_feature complement(2532402..2533277) /gene="xapR" /locus_tag="STM2420" /note="LysR family transcriptional regulator; Region: PRK09986" /db_xref="CDD:182183" misc_feature complement(order(2532504..2532506,2532558..2532563, 2532567..2532572,2532588..2532593,2532648..2532653, 2532747..2532749,2532882..2532884,2532888..2532890, 2532894..2532896,2532918..2532920,2532927..2532932, 2532936..2532941,2532948..2532950,2532969..2532971)) /gene="xapR" /locus_tag="STM2420" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176140" misc_feature complement(order(2532672..2532677,2532819..2532821, 2532966..2532968)) /gene="xapR" /locus_tag="STM2420" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176140" regulatory complement(2533288..2533293) /regulatory_class="ribosome_binding_site" /gene="xapR" /locus_tag="STM2420" /note="putative RBS for xapR; RegulonDB:STMS1H002542" regulatory complement(2533329..2533337) /regulatory_class="minus_10_signal" /gene="xapR" /locus_tag="STM2420" /note="putative -10_signal for xapR; RegulonDB:STMLTH004543" regulatory complement(2533348..2533356) /regulatory_class="minus_35_signal" /gene="xapR" /locus_tag="STM2420" /note="putative -35_signal for xapR; RegulonDB:STMLTH004543" gene complement(2533546..2534814) /gene="xapB" /locus_tag="STM2421" /db_xref="GeneID:1253943" CDS complement(2533546..2534802) /gene="xapB" /locus_tag="STM2421" /note="similar to E. coli xanthosine permease (AAC75459.1); Blastp hit to AAC75459.1 (418 aa), 88% identity in aa 1 - 418" /codon_start=1 /transl_table=11 /product="MFS superfamily xanthosine permease" /protein_id="NP_461356.1" /db_xref="GeneID:1253943" /translation="MGITSRLKVMSFLQYFIWGSWLVTLGSYMINTLDFTGANVGMVY SSKGLAAIIMPGIMGIIADKWLRAERAYMLCHLVCAGALLYATTVTDPQTMFWVMLVN AMAYMPTIALSNSVSYSCLAKAGQDPVTSFPPVRVFGTIGFIVAMWTVSLMGLELSSA QLYIASGASLLLALYALTLPKIPVAEKKANTTLASKLGLDAFVLFKNPRMAIFFLFAM MLGAVLQITNVFGNPFLHDFARNPEFADSFVVKYPSILLSVSQMAEVGFILTIPFFLK RFGIKTVMLMSMLAWTLRFGFFAFGDPSPFGFVLLLLSMIVYGCAFDFFNISGSVFVE QEVDSSIRASAQGLFMTMVNGVGAWIGSLLSGMAVDYFSIDGVKDWQTIWLVFAAYAL ALAVIFALFFKYQHHPEKLSTKSLAH" misc_feature complement(2533549..2534802) /gene="xapB" /locus_tag="STM2421" /note="nucleoside transporter; Region: 2A0110; TIGR00889" /db_xref="CDD:129967" misc_feature complement(order(2533732..2533734,2533741..2533746, 2533753..2533758,2533765..2533767,2533813..2533815, 2533825..2533827,2533837..2533842,2533999..2534001, 2534011..2534013,2534116..2534118,2534125..2534133, 2534140..2534145,2534152..2534154,2534374..2534376, 2534383..2534388,2534395..2534397,2534461..2534463, 2534470..2534478,2534482..2534487,2534638..2534640, 2534737..2534739,2534746..2534751,2534758..2534763)) /gene="xapB" /locus_tag="STM2421" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340866" regulatory complement(2534809..2534814) /regulatory_class="ribosome_binding_site" /gene="xapB" /locus_tag="STM2421" /note="putative RBS for xapB; RegulonDB:STMS1H002543" gene complement(2534857..2535746) /gene="xapA" /locus_tag="STM2422" /db_xref="GeneID:13865713" CDS complement(2534857..2535690) /gene="xapA" /locus_tag="STM2422" /EC_number="2.4.2.-" /note="similar to E. coli xanthosine phosphorylase (AAC75460.1); Blastp hit to AAC75460.1 (277 aa), 87% identity in aa 1 - 277" /codon_start=1 /transl_table=11 /product="purine nucleoside phosphorylase" /protein_id="NP_448816.1" /db_xref="GeneID:13865713" /translation="MPHALFSHNPEYCVDIVHAHKPAFTPRVAFILGSGLGALADQIE DAVAISYEKLPGFPVSTVHGHAGELVLDHLAGVPVACMKGRGHFYEGRGMAVMTDAIR TLKLLGCEVLFCTNAAGSLRPEVGPGSLVALSDHINTMPGTPMVGPNDDRYGDRFFSL ANAYDADYRAMLQSVAAEEGFTLTEGVFVSYPGPNFETAAEIRMMQIIGGDVVGMSVV PEVISARHCGLKVVAVSAITNLAEGLGDVKLSHAQTLAAAELSRQNFINLICGFLRKL A" misc_feature complement(2534863..2535666) /gene="xapA" /locus_tag="STM2422" /note="purine nucleoside phosphorylase; Provisional; Region: PRK08202" /db_xref="CDD:236183" misc_feature complement(order(2534929..2534931,2534938..2534940, 2534944..2534946,2534968..2534979,2535043..2535054, 2535085..2535087,2535100..2535105,2535118..2535120, 2535334..2535348,2535424..2535426,2535430..2535432, 2535436..2535438,2535589..2535594)) /gene="xapA" /locus_tag="STM2422" /note="active site" /db_xref="CDD:350160" misc_feature complement(order(2535043..2535045,2535340..2535345, 2535430..2535432,2535436..2535438,2535496..2535498, 2535589..2535594)) /gene="xapA" /locus_tag="STM2422" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:350160" misc_feature complement(order(2534929..2534931,2534938..2534940, 2534974..2534979,2535046..2535054,2535100..2535105, 2535334..2535342,2535424..2535426,2535430..2535432, 2535589..2535591)) /gene="xapA" /locus_tag="STM2422" /note="purine nucleoside binding site [chemical binding]; other site" /db_xref="CDD:350160" misc_feature complement(order(2534938..2534940,2534944..2534952, 2534965..2534967,2535025..2535027,2535046..2535048, 2535067..2535075,2535079..2535084,2535088..2535123, 2535130..2535132,2535172..2535174,2535184..2535186, 2535193..2535195,2535202..2535222,2535253..2535258, 2535262..2535267,2535271..2535291,2535415..2535429)) /gene="xapA" /locus_tag="STM2422" /note="homotrimer interface [polypeptide binding]; other site" /db_xref="CDD:350160" regulatory complement(2535695..2535700) /regulatory_class="ribosome_binding_site" /gene="xapA" /locus_tag="STM2422" /note="putative RBS for xapA; RegulonDB:STMS1H002544" regulatory complement(2535722..2535730) /regulatory_class="minus_10_signal" /gene="xapA" /locus_tag="STM2422" /note="putative -10_signal for xapA; RegulonDB:STMLTH004544" regulatory complement(2535738..2535746) /regulatory_class="minus_35_signal" /gene="xapA" /locus_tag="STM2422" /note="putative -35_signal for xapA; RegulonDB:STMLTH004544" gene 2535932..2536707 /gene="yfeN" /locus_tag="STM2423" /db_xref="GeneID:1253945" regulatory 2535932..2535937 /regulatory_class="ribosome_binding_site" /gene="yfeN" /locus_tag="STM2423" /note="putative RBS for yfeN; RegulonDB:STMS1H002545" CDS 2535946..2536707 /gene="yfeN" /locus_tag="STM2423" /note="similar to E. coli putative sugar hydrolase (AAC75461.1); Blastp hit to AAC75461.1 (254 aa), 85% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_461358.1" /db_xref="GeneID:1253945" /translation="MKKILTLTLSSLLIIPALTHAEFKGGFADIGLHYLDWTSDTTEK TSKKSHKDDFGYLELEGGANFSWGEMYGFFDWENFYNGRHAKPGSEQRYTFKNTNRIY LGDTGLNLYLHAYGTYGSPHRANFHDDMFLYGLGYNFTGNGYWFKPFFAKRYTDQTYY TGDNGYVLGWVAGYSFSLGSEKFSVTNWNEYEFDRDASYAAGNGGKDGINGAVALWWN ATPHLTAGVQYRYADNKLGESFLQDGIIYSIKYLF" misc_feature 2535991..2536704 /gene="yfeN" /locus_tag="STM2423" /note="hypothetical protein; Provisional; Region: PRK11528" /db_xref="CDD:236922" gene complement(2536769..2537695) /gene="yfeR" /locus_tag="STM2424" /db_xref="GeneID:1253946" CDS complement(2536769..2537695) /gene="yfeR" /locus_tag="STM2424" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC75462.1); Blastp hit to AAC75462.1 (308 aa), 79% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461359.1" /db_xref="GeneID:1253946" /translation="MNYSLRQLRIFITVAQAKSFSRAGDRIGLSQSAVSHSVKELERQ TGVRLLDRTTREVVLTEAGQQLATRLERVLDELNSILRDAGRVGTQLTGTVRVAASQT ISAHLIPQCIAQSNSLYPAIDFVLHDRPQQWVLESIRQGEVDFGIVIDPGAAVDLQCE AILSEPFLLLCRQDHPLAHQEWVSWQDLKQASLVLQDYASGSRPLIDAALAHFAIEAD IVQEIGHPATLFPMVEAGIGISVLPALALPLPQGSHLQVKRLTPVVERQLMLARRKNR SLSTAAQALWDVVRTQASELTAARAKDPLYQL" misc_feature complement(2537504..2537683) /gene="yfeR" /locus_tag="STM2424" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature complement(2536829..2537416) /gene="yfeR" /locus_tag="STM2424" /note="TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440" /db_xref="CDD:176131" misc_feature complement(order(2536991..2536996,2537000..2537005, 2537021..2537038,2537312..2537332,2537336..2537338, 2537348..2537350,2537357..2537362,2537366..2537371)) /gene="yfeR" /locus_tag="STM2424" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176131" gene 2537774..2538783 /gene="yfeH" /locus_tag="STM2425" /db_xref="GeneID:1253947" regulatory 2537774..2537779 /regulatory_class="ribosome_binding_site" /gene="yfeH" /locus_tag="STM2425" /note="putative RBS for yfeH; RegulonDB:STMS1H002546" CDS 2537785..2538783 /gene="yfeH" /locus_tag="STM2425" /note="similar to E. coli putative cytochrome oxidase (AAC75463.1); Blastp hit to AAC75463.1 (332 aa), 90% identity in aa 1 - 332" /codon_start=1 /transl_table=11 /product="putative Na+-dependent transporter" /protein_id="NP_461360.2" /db_xref="GeneID:1253947" /translation="MKLFRILDPFTLTLITVVLLASFFPAEGGFVPVVEGITTAAIAL LFFMHGAKLSREAIIAGGSHWRLHLWVMCSTFVLFPVLGVLFAWWAPVNVDPMLYSGF LYLCILPATVQSAIAFTSLAGGNVAAAVCSASASSLLGIFLSPLLVGLVMNIHGAQGS LEEVGKIMLQLLLPFVLGHLSRPWIGNWVARNKKWIAKTDQTSILLVVYSAFSEAVVN GIWHKVGWGSLLFIVVVSLILLAIVIAINVFVARKCGFNKADEITIVFCGSKKSLANG IPMANILFPTSVLGMMVLPLMIFHQIQLMVCAGLARRYKRQTEKLQAQQESRAAKA" misc_feature 2537806..2538732 /gene="yfeH" /locus_tag="STM2425" /note="SBF-like CPA transporter family (DUF4137); Region: SBF_like; pfam13593" /db_xref="CDD:433336" gene complement(2538780..2539007) /locus_tag="STM2426" /db_xref="GeneID:1253948" CDS complement(2538780..2539007) /locus_tag="STM2426" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461361.3" /db_xref="GeneID:1253948" /translation="MPEMEKEQLVEIANTVMPFGKYQGRRLIDLPEEYLLWFARKDQF PAGKLGELMQITLLIKTEGLTQLVQPLKRPL" misc_feature complement(2538786..2539004) /locus_tag="STM2426" /note="Uncharacterized conserved protein, DUF3820 family [Function unknown]; Region: COG3530" /db_xref="CDD:442752" gene complement(2539000..2541025) /gene="lig" /locus_tag="STM2427" /db_xref="GeneID:1253949" CDS complement(2539000..2541015) /gene="lig" /locus_tag="STM2427" /EC_number="6.5.1.2" /note="similar to E. coli DNA ligase (AAC75464.1); Blastp hit to AAC75464.1 (671 aa), 92% identity in aa 1 - 671" /codon_start=1 /transl_table=11 /product="DNA ligase" /protein_id="NP_461362.1" /db_xref="GeneID:1253949" /translation="MEPIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRE LEAQRPDLITPDSPTQRVGAAPLTAFNQIRHEVPMLSLDNVFDEESFLAFNKRVQDRL KSTENVIWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLH GDNIPARLEVRGEVFLPQAGFEKINEDARRTGGKVFANPRNAAAGSLRQLDPRITAKR PLTFFCYGVGILEGGELPDTHLGRLLQFKAWGLPVSDRVTLCDSPQAVLDFYHNVEKD RPTLGFDIDGVVIKVNSLALQELLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRT GAITPVARLEPVQVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVL SERPEETRPIVFPTHCPVCGSDVERVEGEAVTRCTGGLICGAQRKESLKHFVSRRAMD VDGMGDKIIDQLVEREYVHTPADLFRLTAGKLTGLDRMGPKSAQNVVNALEKSKTTTF ARFLYALGIREVGEATAAGLAAYFGTLEALQAATIDELQKVPDVGIVVATHVFNFFAE ESNRDVIGQLLAEGVHWPAPVVINVQEIDSPFAGKTVVLTGSLSQMSRDDAKARLVAL GAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGITVIDEAEMIRLLGA" misc_feature complement(2539006..2541015) /gene="lig" /locus_tag="STM2427" /note="NAD-dependent DNA ligase LigA; Validated; Region: ligA; PRK07956" /db_xref="CDD:236137" regulatory complement(2541020..2541025) /regulatory_class="ribosome_binding_site" /gene="lig" /locus_tag="STM2427" /note="putative RBS for lig; RegulonDB:STMS1H002547" gene complement(2541087..2542082) /gene="zipA" /locus_tag="STM2428" /db_xref="GeneID:1253950" CDS complement(2541087..2542073) /gene="zipA" /locus_tag="STM2428" /note="cell division protein ZIPA. (SW:ZIPA_SALTY)" /codon_start=1 /transl_table=11 /product="cell division protein involved in FtsZ ring" /protein_id="NP_461363.1" /db_xref="GeneID:1253950" /translation="MMQDLRLILIIVGAIAIIALLVHGFWTSRKERSSMFRDRPLKRM KSKRDDDSYDDDVEEDEGVGEVRVHRVNHAPGQSQEHDAPRQSPQHQYQPPYASAQPR PAAPPQPQAPMQQPVQQPVQPAPQPQQVQPSAPPVQPPQQQPAPPSQAPQPVAQPAPP PSAQTFQPAEPVVEAEPVVEEAPVVEKPQRKEAVIIMNVAAHHGSELNGEVLLNSIQQ SGFKFGDMNIFHRHLSPDGSGPALFSLANMVNPGTFDPEMTDFTTPGVTIFMQVPSYG DALQNFKLMLQSAQHIADEVGGVVLDDQRRMMTPQKLREYQDRIREVMDANA" misc_feature complement(2541090..2542013) /gene="zipA" /locus_tag="STM2428" /note="Cell division protein ZipA, interacts with FtsZ [Cell cycle control, cell division, chromosome partitioning]; Region: ZipA; COG3115" /db_xref="CDD:442349" regulatory complement(2542077..2542082) /regulatory_class="ribosome_binding_site" /gene="zipA" /locus_tag="STM2428" /note="putative RBS for zipA; RegulonDB:STMS1H002548" gene 2542287..2543066 /gene="cysZ" /locus_tag="STM2429" /db_xref="GeneID:1253951" regulatory 2542287..2542292 /regulatory_class="ribosome_binding_site" /gene="cysZ" /locus_tag="STM2429" /note="putative RBS for cysZ; RegulonDB:STMS1H002549" CDS 2542305..2543066 /gene="cysZ" /locus_tag="STM2429" /note="CYSZ protein. (SW:CYSZ_SALTY)" /codon_start=1 /transl_table=11 /product="required for sulfate transport" /protein_id="NP_461364.1" /db_xref="GeneID:1253951" /translation="MVSSSTTVPRSGVYYFSQGWKLVTLPGIRRFVILPLLVNIVLMG GAFWWLFTQLDAWIPSLMSHVPDWLQWLSYLLWPIAVISVLLVFGYFFSTLANWIAAP FNGLLAEQLEARLTGATPPDTGILGIMKDVPRIMKREWQKLAWYLPRAIVLLILYFIP GIGQTIAPVLWFLFSAWMLAIQYCDYPFDNHKVPFKTMRAALRTQKVANMQFGALTSL FTMIPVLNLFIMPVAVCGATAMWVDCWRAKHALWK" misc_feature 2542311..2543063 /gene="cysZ" /locus_tag="STM2429" /note="putative sulfate transport protein CysZ; Validated; Region: PRK04949" /db_xref="CDD:179898" gene 2543157..2544201 /gene="cysK" /locus_tag="STM2430" /db_xref="GeneID:1253952" regulatory 2543157..2543165 /regulatory_class="minus_35_signal" /gene="cysK" /locus_tag="STM2430" /note="putative -35_signal for cysK; RegulonDB:STMLTH004545" regulatory 2543184..2543192 /regulatory_class="minus_10_signal" /gene="cysK" /locus_tag="STM2430" /note="putative -10_signal for cysK; RegulonDB:STMLTH004545" regulatory 2543219..2543224 /regulatory_class="ribosome_binding_site" /gene="cysK" /locus_tag="STM2430" /note="putative RBS for cysK; RegulonDB:STMS1H002550" CDS 2543230..2544201 /gene="cysK" /locus_tag="STM2430" /EC_number="2.5.1.47" /note="cysteine synthase A. (SW:CYSK_SALTY)" /codon_start=1 /transl_table=11 /product="subunit of cysteine synthase A and O-acetylserine sulfhydrolase A" /protein_id="NP_461365.1" /db_xref="GeneID:1253952" /translation="MSKIYEDNSLTIGHTPLVRLNRIGNGRILAKVESRNPSFSVKCR IGANMIWDAEKRGVLKPGVELVEPTSGNTGIALAYVAAARGYKLTLTMPETMSIERRK LLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPE IWEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGE EIKPGPHKIQGIGAGFIPGNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGA AVAAALKLQEDESFTNKNIVVILPSSGERYLSTALFADLFTEKELQQ" misc_feature 2543251..2544165 /gene="cysK" /locus_tag="STM2430" /note="cysteine synthase A; Region: cysK; TIGR01139" /db_xref="CDD:273465" misc_feature order(2543278..2543286,2543314..2543316,2543332..2543334, 2543338..2543340,2543464..2543466,2543473..2543475, 2543521..2543526,2543533..2543538,2543545..2543550, 2543716..2543721,2544016..2544024,2544028..2544036, 2544109..2544111,2544139..2544141,2544148..2544150) /gene="cysK" /locus_tag="STM2430" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:107204" misc_feature order(2543353..2543355,2543443..2543445,2543755..2543772, 2543914..2543916,2544046..2544048,2544127..2544132) /gene="cysK" /locus_tag="STM2430" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107204" misc_feature 2543353..2543355 /gene="cysK" /locus_tag="STM2430" /note="catalytic residue [active]" /db_xref="CDD:107204" protein_bind 2544251..2544271 /note="putative binding site for CRP, RegulonDB: STMS1H000070" /bound_moiety="CRP" protein_bind 2544367..2544381 /note="putative binding site for FruR, RegulonDB: STMS1H000183" /bound_moiety="FruR" protein_bind 2544381..2544393 /note="putative binding site for CRP, RegulonDB: STMS1H000089" /bound_moiety="CRP" gene 2544492..2544842 /gene="ptsH" /locus_tag="STM2431" /db_xref="GeneID:1253953" regulatory 2544492..2544500 /regulatory_class="minus_35_signal" /gene="ptsH" /locus_tag="STM2431" /note="putative -35_signal for ptsH; RegulonDB:STMLTH004546" regulatory 2544518..2544526 /regulatory_class="minus_10_signal" /gene="ptsH" /locus_tag="STM2431" /note="putative -10_signal for ptsH; RegulonDB:STMLTH004546" regulatory 2544572..2544577 /regulatory_class="ribosome_binding_site" /gene="ptsH" /locus_tag="STM2431" /note="putative RBS for ptsH; RegulonDB:STMS1H002551" CDS 2544585..2544842 /gene="ptsH" /locus_tag="STM2431" /note="Hpr protein; PTS family; phosphocarrier protein HPR (histidine-containing protein). (SW:PTHP_ECOLI)" /codon_start=1 /transl_table=11 /product="phosphohistidinoprotein-hexose phosphotransferase" /protein_id="NP_461366.1" /db_xref="GeneID:1253953" /translation="MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASA KSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE" misc_feature 2544585..2544839 /gene="ptsH" /locus_tag="STM2431" /note="phosphocarrier protein Hpr; Region: PRK10850" /db_xref="CDD:182777" misc_feature 2544597..2544608 /gene="ptsH" /locus_tag="STM2431" /note="dimerization domain swap beta strand [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature order(2544624..2544626,2544630..2544635,2544639..2544644, 2544654..2544656,2544663..2544665,2544717..2544728, 2544735..2544740) /gene="ptsH" /locus_tag="STM2431" /note="regulatory protein interface [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature 2544627..2544629 /gene="ptsH" /locus_tag="STM2431" /note="active site" /db_xref="CDD:238217" misc_feature 2544720..2544722 /gene="ptsH" /locus_tag="STM2431" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:238217" gene 2544880..2546618 /gene="ptsI" /locus_tag="STM2432" /db_xref="GeneID:1253954" regulatory 2544880..2544885 /regulatory_class="ribosome_binding_site" /gene="ptsI" /locus_tag="STM2432" /note="putative RBS for ptsI; RegulonDB:STMS1H002552" CDS 2544891..2546618 /gene="ptsI" /locus_tag="STM2432" /EC_number="2.7.3.9" /note="Enzyme I; General PTS family; phosphoenolpyruvate-protein phosphotransferase. (SW:PT1_SALTY)" /codon_start=1 /transl_table=11 /product="PEP-protein phosphotransferase" /protein_id="NP_461367.1" /db_xref="GeneID:1253954" /translation="MISGILASPGIAFGKALLLKEDEIVIDRKKISADKVDQEVERFL SGRAKASAQLEAIKTKAGETFGEEKEAIFEGHIMLLEDEELEQEIIALIKDKHMTADA AAHEVIEGQATALEELDDEYLKERAADVRDIGKRLLRNILGLAIIDLSAIQEEVILVA ADLTPSETAQLNLQKVLGFITDAGGRTSHTSIMARSLELPAIVGTGSVTAQVKNGDYL ILDAVNNQVYVNPTNDVIEQLRAVQEQVATEKAELAKLKDLPAITLDGHQVEVCANIG TVRDVEGAERNGAEGVGLYRTEFLFMDRDALPTEEEQFAAYKAVAEACGSQAVIVRTM DIGGDKELPYMNFPKEENPFLGWRAVRIAMDRKEILRDQVRAILRASAFGKLRIMFPM IISVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFS IGTNDLTQYTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAEGKWTGMCGELAGD ERATLLLLGMGLDEFSMSAISIPRIKKIIRNTNFEDAKVLAEQALAQPTTDELMTLVN KFIEEKTIC" misc_feature 2544891..2546615 /gene="ptsI" /locus_tag="STM2432" /note="phosphoenolpyruvate-protein phosphotransferase PtsI; Region: PRK11177" /db_xref="CDD:183017" gene 2546647..2547168 /gene="crr" /locus_tag="STM2433" /db_xref="GeneID:1253955" regulatory 2546647..2546652 /regulatory_class="ribosome_binding_site" /gene="crr" /locus_tag="STM2433" /note="putative RBS for crr; RegulonDB:STMS1H002553" CDS 2546659..2547168 /gene="crr" /locus_tag="STM2433" /note="PTS family; PTS system; glucose-specific IIA component (EIIA-GLC) (glucose-permease IIA component) (phosphotransferase enzyme II, A component). (SW:PTGA_SALTY)" /codon_start=1 /transl_table=11 /product="glucose-specific IIA component" /protein_id="NP_461368.1" /db_xref="GeneID:1253955" /translation="MGLFDKLKSLVSDDKKDTGTIEIVAPLSGEIVNIEDVPDVVFAE KIVGDGIAIKPTGNKMVAPVDGTIGKIFETNHAFSIESDSGIELFVHFGIDTVELKGE GFKRIAEEGQRVKVGDPVIEFDLPLLEEKAKSTLTPVVISNMDEIKELIKLSGSVTVG ETPVIRIKK" misc_feature 2546659..2547165 /gene="crr" /locus_tag="STM2433" /note="PTS system glucose-specific transporter subunit; Provisional; Region: PRK09439" /db_xref="CDD:181859" misc_feature order(2546773..2546784,2546794..2546799,2546863..2546868, 2546872..2546877,2546893..2546901,2546917..2546925, 2546929..2546931,2546941..2546943,2546947..2546952, 2546986..2546988,2547082..2547084,2547091..2547093) /gene="crr" /locus_tag="STM2433" /note="HPr interaction site [active]" /db_xref="CDD:238128" misc_feature order(2546773..2546775,2546779..2546784,2546788..2546790, 2546794..2546799,2546866..2546868,2546872..2546874, 2546884..2546886,2546923..2546925,2546929..2546931, 2546941..2546943,2546947..2546952,2546956..2546958, 2547082..2547084) /gene="crr" /locus_tag="STM2433" /note="glycerol kinase (GK) interaction site [polypeptide binding]; other site" /db_xref="CDD:238128" misc_feature order(2546878..2546880,2546884..2546886,2546929..2546931, 2546935..2546937) /gene="crr" /locus_tag="STM2433" /note="active site" /db_xref="CDD:238128" misc_feature 2546929..2546931 /gene="crr" /locus_tag="STM2433" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238128" gene complement(2547317..2547563) /locus_tag="STM2434" /db_xref="GeneID:1253956" CDS complement(2547317..2547556) /locus_tag="STM2434" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461369.1" /db_xref="GeneID:1253956" /translation="MKSYRLVVRQQGRIVGHFETSGLDALEDICVARAMFGITGGYQC ELQVSDSERRMLESGPDGMKILMREKCFRPVTSQL" gene complement(2547553..2548431) /gene="pdxK" /locus_tag="STM2435" /db_xref="GeneID:1253957" CDS complement(2547553..2548419) /gene="pdxK" /locus_tag="STM2435" /EC_number="2.7.1.35" /note="hydroxymethylpyrimidine kinase; pyridoxine kinase. (SW:PDXK_SALTY)" /codon_start=1 /transl_table=11 /product="pyridoxal-pyridoxamine kinase" /protein_id="NP_461370.1" /db_xref="GeneID:1253957" /translation="MGQESDIQSVLFDDNHRALQTDIVAVQSQVVYGSVGNSIAVPAI KAQGLRVTAVPTVLFSNTPHYKTFYGGIIPAEWFAGYLTALNERDALRELKAITTGYM GSADQIVLLSKWLMAIRASHPEVCILVDPVIGDTDSGMYVQAEIPQAYRTHLLPQAQG LTPNVFELEMLSGKPCRTLEEAVAAAQSLLSDTLKWVVITSAPGESLETITVAVVTAQ VVEVFAHPRVATELKGTGDLFCAELVSGIVQGKKLTTAAKDAAQRVLEVMTWTQQCGC DELILPPAGEAR" misc_feature complement(2547565..2548404) /gene="pdxK" /locus_tag="STM2435" /note="pyridoxine/pyridoxal/pyridoxamine kinase; Region: pdxK; PRK08176" /db_xref="CDD:181269" misc_feature complement(order(2548156..2548158,2548177..2548182, 2548201..2548203,2548207..2548212,2548237..2548239, 2548246..2548248,2548255..2548272,2548285..2548287, 2548294..2548296,2548306..2548308,2548318..2548320, 2548324..2548329,2548333..2548335,2548354..2548356)) /gene="pdxK" /locus_tag="STM2435" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238578" misc_feature complement(order(2547709..2547711,2547718..2547723, 2548111..2548113,2548117..2548119,2548216..2548218, 2548231..2548236,2548243..2548245,2548312..2548317, 2548336..2548338)) /gene="pdxK" /locus_tag="STM2435" /note="pyridoxal binding site [chemical binding]; other site" /db_xref="CDD:238578" misc_feature complement(order(2547616..2547618,2547628..2547630, 2547703..2547705,2547709..2547717,2547736..2547741, 2547745..2547747,2547790..2547792,2547817..2547822, 2547919..2547921,2547928..2547930,2547934..2547936, 2548015..2548017,2548030..2548032)) /gene="pdxK" /locus_tag="STM2435" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238578" regulatory complement(2547558..2547563) /regulatory_class="ribosome_binding_site" /locus_tag="STM2434" /note="putative RBS for STM2434; RegulonDB:STMS1H002554" regulatory complement(2548426..2548431) /regulatory_class="ribosome_binding_site" /gene="pdxK" /locus_tag="STM2435" /note="putative RBS for pdxK; RegulonDB:STMS1H002555" gene 2548498..2549794 /gene="ptsJ" /locus_tag="STM2436" /db_xref="GeneID:1253958" regulatory 2548498..2548503 /regulatory_class="ribosome_binding_site" /gene="ptsJ" /locus_tag="STM2436" /note="putative RBS for ptsJ; RegulonDB:STMS1H002556" CDS 2548502..2549794 /gene="ptsJ" /locus_tag="STM2436" /note="putative transcriptional regulatory protein PTSJ. (SW:PTSJ_SALTY)" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_461371.1" /db_xref="GeneID:1253958" /translation="MIDGKTANEIFDSIRQHIIAGTLRAEDSLPPVRELASELKVNRN TVAAAYKRLITAGLAQSLGRNGTVIKGSPSPVALEGGDPHTPLHDLSGGNPDPQRLPD LSRYFARLSRTPHLYGDAPVSPELHAWAARWLRDATPVAGEIDITSGAIDAIERLLCA HLLPGDSVAVEDPCFLSSINMLRYAGFSASPVSVDSEGMQPEKLERALNQGARAVILT PRAHNPTGCSLSARRAAALQNMLARYPQVVVIIDDHFALLSSSPWQPVIAQTTQHWAV IRSVSKTLGPDLRLAIVASDSATSAKLRLRLNAGSQWVSHLLQDLVYACLTDPEYQHR LTQTRLFYAARQQKLARALQQYGIAISPGDGVNAWLPLDTHSQATAFTLAKSGWLVRE GEAFGVSAPSHGLRITLSTLNDSEINTLAADIHQALNR" misc_feature 2548502..2549791 /gene="ptsJ" /locus_tag="STM2436" /note="transcriptional regulatory protein PtsJ; Provisional; Region: PRK15481" /db_xref="CDD:185378" gene 2549801..2550528 /gene="yfeJ" /locus_tag="STM2437" /db_xref="GeneID:1253959" regulatory 2549801..2549806 /regulatory_class="ribosome_binding_site" /gene="yfeJ" /locus_tag="STM2437" /note="putative RBS for yfeJ; RegulonDB:STMS1H002557" CDS 2549809..2550528 /gene="yfeJ" /locus_tag="STM2437" /note="contains glutamine amidotransferase domain; hypothetical 18.7 Kda protein in pdxK-cysM intergenic region. (SW:YFEJ_SALTY)" /codon_start=1 /transl_table=11 /product="putative GMP synthase" /protein_id="NP_461372.1" /db_xref="GeneID:1253959" /translation="MRVHFVVHESFESAGAYLKWAEDRGYTISWSRVYAGEALPPNAD EFDMLVVFGGPQSPRTTREECPYFDSRAEQHLINQAVTARRMVIGICLGSQLIGEALG AAVCQSPEKEIGHYPITLTEAGLRHPLIAHFGSPLTVGHWHNDMPGLTDQATVLAESE GCPRQIVQYGNFVYGFQCHMEFTVEAVEGLIQHSQQELADAQGKRFIRSVAEMRAWNY QQMNEKLWRFLDELTLAHSQK" misc_feature 2549809..2550513 /gene="yfeJ" /locus_tag="STM2437" /note="glutamine amidotransferase; Provisional; Region: PRK08250" /db_xref="CDD:181323" gene 2550568..2550967 /gene="yfeK" /locus_tag="STM2438" /db_xref="GeneID:1253960" regulatory 2550568..2550573 /regulatory_class="ribosome_binding_site" /gene="yfeK" /locus_tag="STM2438" /note="putative RBS for yfeK; RegulonDB:STMS1H002558" CDS 2550587..2550967 /gene="yfeK" /locus_tag="STM2438" /note="hypothetical 13.3 Kda protein in pdxK-cysM intergenic region. (SW:YFEK_SALTY)" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461373.2" /db_xref="GeneID:1253960" /translation="MKKDFTMKKIVCAVVALLLTLPAWAKLNAHEEARINAMLNALAQ KKDLTFVRNGDAHNCEEAVSHLRLKLGNTRNRIDTAEQFIDKVASSSSITGKPYIVKI PGKSDENAQPYLHALIAETDKNVE" misc_feature 2550608..2550961 /gene="yfeK" /locus_tag="STM2438" /note="hypothetical protein; Provisional; Region: PRK10318" /db_xref="CDD:236672" gene 2550976..2551519 /gene="yfeL" /locus_tag="STM2439" /db_xref="GeneID:1253961" regulatory 2550976..2550981 /regulatory_class="ribosome_binding_site" /gene="yfeL" /locus_tag="STM2439" /note="putative RBS for yfeL; RegulonDB:STMS1H002559" CDS 2550980..2551519 /gene="yfeL" /locus_tag="STM2439" /note="penicillin-binding protein; hypothetical 20.5 Kda protein in pdxK-cysM intergenic region. (SW:YFEL_SALTY)" /codon_start=1 /transl_table=11 /product="putative membrane carboxypeptidase" /protein_id="NP_461374.1" /db_xref="GeneID:1253961" /translation="MPGVLLWFFKGVIALLLAFAVGLIVYYYLEIRPIAQTALQSASF WLSESPQTRFLRRAAAKIHPKSYTARLLYTQAGVDGHFRIAIWVFWLDSLYRDDELYA MMLAQAYYGRDSQGNAVYGTKNAALTLFHVPVTEMACQQQVQLIYMFKAPSLYRPGSA RLVESSKHYMTLCQEQIQQ" misc_feature <2551250..>2551450 /gene="yfeL" /locus_tag="STM2439" /note="penicillin-binding protein 1b; Provisional; Region: PRK14850" /db_xref="CDD:237835" gene complement(2551650..2552569) /gene="cysM" /locus_tag="STM2440" /db_xref="GeneID:1253962" CDS complement(2551650..2552561) /gene="cysM" /locus_tag="STM2440" /EC_number="2.5.1.47" /note="O-acetylserine sulfhydrolase B; cysteine synthase B. (SW:CYSM_SALTY)" /codon_start=1 /transl_table=11 /product="cysteine synthase B" /protein_id="NP_461375.1" /db_xref="GeneID:1253962" /translation="MNTLEQTIGNTPLVKLQRLGPDNGSEIWVKLEGNNPAGSVKDRA ALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAA MRAYGAELILVTKEQGMEGARDLALAMSERGEGKLLDQFNNPDNPYAHYTTTGPEIWR QTSGRITHFVSSMGTTGTITGVSRFLREQEKPVTIVGLQPEEGSSIPGIRRWPAEYMP GIFNASLVDEVLDIHQNDAENTMRELAVREGIFCGVSSGGAVAGALRVARATPGAIVV AIICDRGDRYLSTGVFGEEHFSQGAGI" misc_feature complement(2551680..2552561) /gene="cysM" /locus_tag="STM2440" /note="cysteine synthase CysM; Region: cysM; PRK11761" /db_xref="CDD:236972" misc_feature complement(order(2551701..2551703,2551710..2551712, 2551740..2551742,2551809..2551817,2551821..2551829, 2552079..2552084,2552244..2552249,2552256..2552261, 2552268..2552273,2552319..2552321,2552328..2552330, 2552454..2552456,2552460..2552462,2552478..2552480, 2552517..2552525)) /gene="cysM" /locus_tag="STM2440" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:107204" misc_feature complement(order(2551719..2551724,2551797..2551799, 2551938..2551940,2552028..2552045,2552349..2552351, 2552439..2552441)) /gene="cysM" /locus_tag="STM2440" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107204" misc_feature complement(2552439..2552441) /gene="cysM" /locus_tag="STM2440" /note="catalytic residue [active]" /db_xref="CDD:107204" regulatory complement(2552564..2552569) /regulatory_class="ribosome_binding_site" /gene="cysM" /locus_tag="STM2440" /note="putative RBS for cysM; RegulonDB:STMS1H002560" gene complement(2552629..2553739) /gene="cysA" /locus_tag="STM2441" /db_xref="GeneID:1253963" CDS complement(2552629..2553726) /gene="cysA" /locus_tag="STM2441" /note="chromate resistance; ABC superfamily (atp_bind); sulfate transport atp-binding protein CYSA. (SW:CYSA_SALTY)" /codon_start=1 /transl_table=11 /product="sulfate permease A protein" /protein_id="NP_461376.1" /db_xref="GeneID:1253963" /translation="MSIEIARIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTL LRIIAGLEHQSSGHIRFHGTDVSRLHARERKVGFVFQHYALFRHMTVFDNIAFGLTVL PRRDRPTAAAIKTKVTQLLEMVQLAHLADRFPAQLSGGQKQRVALARALAVEPQILLL DEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEATEVADRVVVMSQGNIEQA DAPDRVWREPATRFVLEFMGEVNRLTGTVRGGQFHVGAHRWPLGYTPAYQGPVDLFLR PWEVDISRRTSLDSPLPVQVIEASPKGHYTQLVVQPLGWYHDPLTVVMAGEDVPVRGE RLFVGLQKARLYNGDQRIETREEELALAQSA" misc_feature complement(2552671..2553726) /gene="cysA" /locus_tag="STM2441" /note="sulfate/thiosulfate ABC transporter ATP-binding protein CysA; Region: PRK10851" /db_xref="CDD:182778" gene complement(2553716..2554596) /gene="cysW" /locus_tag="STM2442" /db_xref="GeneID:1253964" CDS complement(2553716..2554591) /gene="cysW" /locus_tag="STM2442" /note="ABC superfamily (membrane); similar to E. coli sulfate transport system permease W protein (AAC75476.1); Blastp hit to AAC75476.1 (149 aa), 99% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="thiosulfate permease W protein" /protein_id="NP_461377.1" /db_xref="GeneID:1253964" /translation="MAEVTQLKRYDVPRINWGKWFLIGVGMLVSAFILLVPMIYIFVQ AFSKGLMPVLQNLADPDMLHAIWLTVLIALIAVPVNLVFGILLAWLVTRFNFPGRQLL LTLLDIPFAVSPVVAGLVYLLFYGSNGPLGGWLDEHNLQMMFSWPGMVLVTIFVTCPF VVRELVPVMLSQGSQEDEAAILLGASGWQMFRRVTLPNIRWALLYGVVLTNARAIGEF GAVSVVSGSIRGETLSLPLQIELLEQDYNTVGSFTAAALLTLMAIITLFLKSMLQWRL ENQEKRAQQEENHEH" misc_feature complement(2553743..2554591) /gene="cysW" /locus_tag="STM2442" /note="sulfate/thiosulfate ABC transporter permease CysW; Region: cysW; PRK11602" /db_xref="CDD:183225" misc_feature complement(order(2553803..2553808,2553815..2553820, 2553827..2553832,2553836..2553841,2553848..2553853, 2553881..2553886,2553923..2553928,2553935..2553946, 2553965..2553967,2553974..2553979,2554019..2554021, 2554070..2554072,2554079..2554084,2554094..2554096, 2554100..2554105,2554112..2554114,2554121..2554123, 2554127..2554132,2554226..2554228,2554232..2554237, 2554244..2554273,2554277..2554288,2554316..2554318, 2554331..2554336,2554343..2554348)) /gene="cysW" /locus_tag="STM2442" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2553929..2553946,2554226..2554270)) /gene="cysW" /locus_tag="STM2442" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(2553851..2553853,2553881..2553883, 2553890..2553892,2553926..2553928,2554145..2554147, 2554226..2554228)) /gene="cysW" /locus_tag="STM2442" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(2553998..2554000,2554010..2554015, 2554031..2554069)) /gene="cysW" /locus_tag="STM2442" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(2553734..2553739) /regulatory_class="ribosome_binding_site" /gene="cysW" /locus_tag="STM2442" /note="putative RBS for cysA; RegulonDB:STMS1H002561" gene complement(2554591..2555438) /gene="cysU" /locus_tag="STM2443" /db_xref="GeneID:1253965" CDS complement(2554591..2555424) /gene="cysU" /locus_tag="STM2443" /note="ABC superfamily (membrane); similar to E. coli sulfate, thiosulfate transport system permease T protein (AAC75477.1); Blastp hit to AAC75477.1 (277 aa), 95% identity in aa 1 - 277" /codon_start=1 /transl_table=11 /product="thiosulfate transport protein" /protein_id="NP_461378.1" /db_xref="GeneID:1253965" /translation="MLAVSSRRVLPGFTLSLGTSLLFVCLILLLPLSALVMQLSQMSW AQYWDVVTNPQVVAAYKVTLLAAFVASIFNGVFGLLMAWILTRYRFPGRTLLDALMDL PFALPTAVAGLTLASLFSVNGFYGQFLAQFDIKVTYTWLGIAVAMAFTSIPFVVRTVQ PVLEELGPEYEEAAQTLGATRLQSFRKVVLPELSPALIAGVALSFTRSLGEFGAVIFI AGNIAWKTEVTSLMIFVRLQEFDYPAASAIASVILAASLLLLFSINTLQSRFGRRVVG H" misc_feature complement(2554594..2555424) /gene="cysU" /locus_tag="STM2443" /note="sulfate/thiosulfate ABC transporter permease CysT; Region: PRK10971" /db_xref="CDD:182873" misc_feature complement(order(2554669..2554671,2554678..2554683, 2554687..2554692,2554699..2554704,2554732..2554737, 2554774..2554779,2554786..2554797,2554816..2554818, 2554825..2554830,2554870..2554872,2554921..2554923, 2554930..2554935,2554945..2554947,2554951..2554956, 2554963..2554965,2554969..2554971,2554978..2554983, 2555077..2555079,2555083..2555088,2555095..2555124, 2555128..2555139,2555167..2555169,2555182..2555187, 2555194..2555199)) /gene="cysU" /locus_tag="STM2443" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(2554780..2554797,2555077..2555121)) /gene="cysU" /locus_tag="STM2443" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(2554702..2554704,2554732..2554734, 2554741..2554743,2554777..2554779,2554996..2554998, 2555077..2555079)) /gene="cysU" /locus_tag="STM2443" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(2554849..2554851,2554861..2554866, 2554882..2554920)) /gene="cysU" /locus_tag="STM2443" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(2554591..2554596) /regulatory_class="ribosome_binding_site" /gene="cysU" /locus_tag="STM2443" /note="putative RBS for cysW; RegulonDB:STMS1H002562" gene complement(2555424..2556546) /gene="cysP" /locus_tag="STM2444" /db_xref="GeneID:1253966" CDS complement(2555424..2556440) /gene="cysP" /locus_tag="STM2444" /note="ABC superfamily (bind_prot); thiosulfate-binding protein precursor. (SW:CYSP_SALTY)" /codon_start=1 /transl_table=11 /product="thiosulfate transport protein" /protein_id="NP_461379.1" /db_xref="GeneID:1253966" /translation="MAVNLLKKRPLTLAAMLLLAGQAQATELLNSSYDVSRELFAALN PPFEQQWAKDNGGDKLTIKQSHAGSSKQALAILQGLKADVVTYNQVTDVQILHDKGKL IPADWQSRLPNNSSPFYSTMGFLVRKGNPKNIHDWSDLVRSDVKLIFPNPKTSGNARY TYLAAWGAADNADGGDKAKTEQFMTQFLKNVEVFDTGGRGATTTFAERGLGDVLISFE SEVNNIRKQYEAQGFEVVIPKTNILAEFPVAWVDKNVQANGTEKAAKAYLNWLYSPQA QTIITHYYYRVNNPEIMGKQADKFPQTELFRVEEKFGSWPEVMKTHFASGGELDKLLA AGRK" misc_feature complement(2555427..2556440) /gene="cysP" /locus_tag="STM2444" /note="thiosulfate ABC transporter substrate-binding protein CysP; Region: PRK10852" /db_xref="CDD:236775" misc_feature complement(order(2555790..2555792,2555847..2555852, 2555970..2555978,2556177..2556179,2556234..2556242, 2556336..2556344)) /gene="cysP" /locus_tag="STM2444" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270226" regulatory complement(2555433..2555438) /regulatory_class="ribosome_binding_site" /gene="cysU" /locus_tag="STM2443" /note="putative RBS for cysU; RegulonDB:STMS1H002563" regulatory complement(2556446..2556451) /regulatory_class="ribosome_binding_site" /gene="cysP" /locus_tag="STM2444" /note="putative RBS for cysP; RegulonDB:STMS1H002564" regulatory complement(2556522..2556530) /regulatory_class="minus_10_signal" /gene="cysP" /locus_tag="STM2444" /note="putative -10_signal for cysP; RegulonDB:STMLTH004547" regulatory complement(2556538..2556546) /regulatory_class="minus_35_signal" /gene="cysP" /locus_tag="STM2444" /note="putative -35_signal for cysP; RegulonDB:STMLTH004547" gene complement(2556598..2557404) /gene="ucpA" /locus_tag="STM2445" /db_xref="GeneID:1253967" CDS complement(2556598..2557389) /gene="ucpA" /locus_tag="STM2445" /EC_number="1.-.-.-" /note="similar to E. coli putative oxidoreductase (AAC75479.1); Blastp hit to AAC75479.1 (285 aa), 92% identity in aa 23 - 285" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_461380.1" /db_xref="GeneID:1253967" /translation="MGKLTGKTALITGASQGIGEGIARVFARHGANLILLDISDEIEK LADELGGRGHRCTAVKADVRDFASVQAAVARAKETEGRIDILVNNAGVCRLGNFLDMS EEDRDFHIDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKA AIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESVLTEMAKAIPL RRLADPLEVGELAAFLASDESSYLTGTQNVIDGGSTLPESVSVGV" misc_feature complement(2556601..2557389) /gene="ucpA" /locus_tag="STM2445" /note="SDR family oxidoreductase UcpA; Region: PRK08226" /db_xref="CDD:181305" regulatory complement(2557399..2557404) /regulatory_class="ribosome_binding_site" /gene="ucpA" /locus_tag="STM2445" /note="putative RBS for ucpA; RegulonDB:STMS1H002565" gene complement(2557627..2558537) /locus_tag="STM2446" /db_xref="GeneID:1253968" CDS complement(2557627..2558526) /locus_tag="STM2446" /note="similar to E. coli orf, hypothetical protein (AAC75484.1); Blastp hit to AAC75484.1 (308 aa), 94% identity in aa 10 - 308" /codon_start=1 /transl_table=11 /product="putative iron-dependent peroxidase" /protein_id="NP_461381.1" /db_xref="GeneID:1253968" /translation="MSQVQSGILPEHCRAAIWIEANVKGDLDALRAASRTFADKLATF EVKFPDAHLGAVVAFGNNTWRALSGGVGAEELKDFIPYGKGLAPATQYDVLIHILSLR HDVNFSVAQAAMEAFGDCIDVKEEVHGFRWVEERDLSGFVDGTENPAGEETRREVAVI KDGVDAGGSYVFVQRWEHNLKQLNRMSIHDQEMMIGRTKEANEEIDGDARPATSHLSR VDLKEDGKGLKIVRQSLPYGTASGTHGLYFCAYCARLHNIEQQLLSMFGDTDGKRDAM LRFTKPVTGGYYFAPSLDRLLAL" misc_feature complement(2557639..2558514) /locus_tag="STM2446" /note="Dyp-type peroxidase family; Region: Dyp_perox; pfam04261" /db_xref="CDD:461241" regulatory complement(2558532..2558537) /regulatory_class="ribosome_binding_site" /locus_tag="STM2446" /note="putative RBS for STM2446; RegulonDB:STMS1H002566" gene complement(2558621..2559207) /locus_tag="STM2447" /db_xref="GeneID:1253969" CDS complement(2558621..2559196) /locus_tag="STM2447" /note="similar to E. coli orf, hypothetical protein (AAC75485.1); Blastp hit to AAC75485.1 (191 aa), 80% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_461382.1" /db_xref="GeneID:1253969" /translation="MKSLRLTLLALPLAVTGCSTLSSVNWSAANPWNWFGSSTEVTEQ GVGALTAATPLEEPAIAEALDGDYRLRSGMKTDNGNVVRFFEAMKGDSVAMVINGEQG TVSRIDVLDSDIPTAAGGKIGTPFSDLYSKAFGHCEPVSSDSHTSVECKAEGSQHISY VFSGEWSGPEGLMPPDDVLKNWDVRKIIWRR" misc_feature complement(2558624..2559157) /locus_tag="STM2447" /note="RpoE-regulated lipoprotein; Provisional; Region: PRK10718" /db_xref="CDD:236742" regulatory complement(2559202..2559207) /regulatory_class="ribosome_binding_site" /locus_tag="STM2447" /note="putative RBS for STM2447; RegulonDB:STMS1H002567" gene complement(2559258..2559707) /gene="yfeZ" /locus_tag="STM2448" /db_xref="GeneID:1253970" CDS complement(2559258..2559707) /gene="yfeZ" /locus_tag="STM2448" /note="similar to E. coli orf, hypothetical protein (AAC75486.1); Blastp hit to AAC75486.1 (151 aa), 73% identity in aa 3 - 151" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461383.1" /db_xref="GeneID:1253970" /translation="MKSTEFHPADYDVHGRLRLPFLFWCVLLLQARAWVLFVIAGSSR GQGNTLLNFFYPDHDNFWLGLLPGVPAVVAFLLSGRRDAVPGVWRWLRGLLILAQLVS LCWLPVMWLGGDPVNGVGLALLLADIVALIWLLTNQRLRACFSLEKE" misc_feature complement(2559273..2559692) /gene="yfeZ" /locus_tag="STM2448" /note="Protein of unknown function (DUF2919); Region: DUF2919; pfam11143" /db_xref="CDD:431678" gene complement(2559694..2560230) /locus_tag="STM2449" /db_xref="GeneID:1253971" CDS complement(2559694..2560230) /locus_tag="STM2449" /note="similar to E. coli orf, hypothetical protein (AAC75487.1); Blastp hit to AAC75487.1 (178 aa), 85% identity in aa 1 - 178" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_461384.3" /db_xref="GeneID:1253971" /translation="MTHRHYAIFSATSRQILAESDVCAIILVFPPEKATNTMEIRVFR QEDFEEVITLWERCDLLRPWNDPEMDIERKVNHDVSLFLVAEVSGEVVGTVMGGYDGH RGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQIMVRDDNDVVLGMYERLGY EHSDALSLGKRLIEDEEY" misc_feature complement(2559706..2560125) /locus_tag="STM2449" /note="putative acetyltransferase; Provisional; Region: PRK03624" /db_xref="CDD:235142" gene 2560324..2561201 /gene="amiA" /locus_tag="STM2450" /db_xref="GeneID:1253972" regulatory 2560324..2560329 /regulatory_class="ribosome_binding_site" /gene="amiA" /locus_tag="STM2450" /note="putative RBS for amiA; RegulonDB:STMS1H002568" CDS 2560332..2561201 /gene="amiA" /locus_tag="STM2450" /EC_number="3.5.1.28" /note="probable N-acetylmuramoyl-L-alanine amidase AMIA precursor. (SW:AMIA_SALTY)" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-l-alanine amidase I" /protein_id="NP_461385.1" /db_xref="GeneID:1253972" /translation="MSTFKLLKTLTSRRQVLKTGLAALTLSGMSHAVAKEETLKTSNG HSKPKTKKTGSKRLVMLDPGHGGIDTGAIGRNGSQEKHVVLAIAKNVRAILRNHGIDA RLTRTGDTFIPLYDRVEIAHKHGADLFMSIHADGFTNPKAAGASVFALSNRGASSAMA KYLSERENRADEVAGKKATDRDHLLQQVLFDLVQTDTIKNSLTLGSHILKKIKPIHKL HSRTTEQAAFVVLKSPSIPSVLVETSFITNPEEERLLGTTAFRQKIATAIANGIISYF HWFDNQKAHTKKR" misc_feature 2560332..2561192 /gene="amiA" /locus_tag="STM2450" /note="N-acetylmuramoyl-L-alanine amidase AmiA; Region: PRK10319" /db_xref="CDD:182376" gene 2561195..2562103 /gene="hemF" /locus_tag="STM2451" /db_xref="GeneID:1253973" regulatory 2561195..2561200 /regulatory_class="ribosome_binding_site" /gene="amiA" /locus_tag="STM2450" /note="putative RBS for hemF; RegulonDB:STMS1H002569" CDS 2561204..2562103 /gene="hemF" /locus_tag="STM2451" /EC_number="1.3.3.3" /note="coproporphyrinogen III oxidase, aerobic. (SW:HEM6_SALTY)" /codon_start=1 /transl_table=11 /product="coproporphyrinogen III oxidase" /protein_id="NP_461386.1" /db_xref="GeneID:1253973" /translation="MKPDAHHVKQFLLRLQDDICQTLSAVDGANFVEDSWRREAGGGG RSRVLRNGGIFEQAGVNFSHVHGDAMPASATAHRPELAGRSFEAMGVSLVVHPHNPYI PTSHANVRFFIAEKPGADPVWWFGGGFDLTPYYGFEEDAVHWHRTARDLCQPFGDDVY PRYKKWCDDYFFLKHRNEQRGVGGLFFDDLNTPDFDHCFDFMQAVGNGYTRAYLPIVE RRKAMVWGERERNFQLYRRGRYVEFNLVWDRGTLFGLQTGGRTESILMSMPPLVRWEY DWQPEAGSPEAALSEFIQVRDWI" misc_feature 2561204..2562100 /gene="hemF" /locus_tag="STM2451" /note="oxygen-dependent coproporphyrinogen oxidase; Region: PRK05330" /db_xref="CDD:235413" gene 2562124..2562453 /locus_tag="STM2452" /db_xref="GeneID:1253974" CDS 2562124..2562453 /locus_tag="STM2452" /note="hypothetical protein in eutR-hemF intergenic region (ORF33). (SW:YPFK_SALTY)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461387.1" /db_xref="GeneID:1253974" /translation="MQTNTRKVVTSDAKWHPHLGISFIGCLLAITLEIYFEERIFIPH SGGVSFGLIVLLVINMVTIPVVMALIALLCFIIHIPRKSVNCILLCLLSCILTIAGLF IAYPVGR" gene 2562575..2563859 /locus_tag="STM2453" /db_xref="GeneID:1253975" regulatory 2562575..2562580 /regulatory_class="ribosome_binding_site" /locus_tag="STM2453" /note="putative RBS for STM2453; RegulonDB:STMS1H002570" CDS 2562582..2563859 /locus_tag="STM2453" /note="hypothetical 30.0 Kda protein in eutR-hemF intergenic region (ORF79). (SW:YPFL_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461388.1" /db_xref="GeneID:1253975" /translation="MDERIPCKNPQCSHFILPATAARTEGYCMPCVQARYRQVQEEYI RKNRKTIDAFSGITNPVEMLKLVHEPREHDPLIEWIPCPIPTDELYKKLSDDESRDMV DYAEELFDSGWQEEAQEIALCLAAFTQANLDNFLRQVINEEELELSSPLPFHRAPPDV RDALLQKVETDDENRDGILCALAWIGDEVVVEHFNRWRQEPPAWSASLHILPHRYAHQ AGWELTENGRRRDLYFTQCTHLVKQAPEQPAVFRAVAEYGENCPHCSLPLINLFEVAP SAVGLSTQGWPGQIRILTCQCCTAYNTVFATVDPQGQPRWYEKNALSTLAVENSADWI TLPLDVLHPGESRLPLFAAEIFLPTTFSQLGGHPAWVQDTDYPTCPTCAQTMMFLAQL SYEDIEEEEYAEGMLYGFICPSCQTTATSYQQT" gene complement(2564059..2565126) /gene="eutR" /locus_tag="STM2454" /db_xref="GeneID:1253976" CDS complement(2564059..2565111) /gene="eutR" /locus_tag="STM2454" /note="AraC/XylS family; ethanolamine operon regulatory protein. (SW:EUTR_SALTY)" /codon_start=1 /transl_table=11 /product="putative regulator ethanolamine operon" /protein_id="NP_461389.1" /db_xref="GeneID:1253976" /translation="MKKTRTANLHHLYHEALPEDVKLTPRVEVDNVHQRRTTDVYEHA LTITAWQQIYDQLHPGKFHGEFTEILLDEIQVFREYTGLALRQSCLVWPNSFWFGIPA TRGEQGFIGAQGLGSAEIATRPGGTEFELSTPDDYTILGVVISEDVISRQATFLHNPE RVLHMLRNQLALEVKEQHKAALWGFVQQALATFSESPETLHQPAVRKVLSDNLLLAMG TMLEEAKPIHSAESISHQGYRRLLSRAREYVLENMSEPLTVLDLCNQLHVSRRTLQNA FHAILGIGPNAWLKRIRLNAVRRELISPWSQSATVKDAAMQWGFWHLGQFATDYQQLF AEKPSLTLHQRMRQWA" misc_feature complement(2564065..2565111) /gene="eutR" /locus_tag="STM2454" /note="HTH-type transcriptional regulator EutR; Region: PRK10130" /db_xref="CDD:182258" regulatory complement(2565121..2565126) /regulatory_class="ribosome_binding_site" /gene="eutR" /locus_tag="STM2454" /note="putative RBS for eutR; RegulonDB:STMS1H002571" gene complement(2565159..2565666) /gene="eutK" /locus_tag="STM2455" /db_xref="GeneID:1253977" CDS complement(2565159..2565653) /gene="eutK" /locus_tag="STM2455" /note="ethanolamine utilization; ethanolamine utilization protein EUTK precursor. (SW:EUTK_SALTY)" /codon_start=1 /transl_table=11 /product="putative carboxysome structural protein" /protein_id="NP_461390.1" /db_xref="GeneID:1253977" /translation="MINALGLLEVDGMVAAVDAADAMLKAANVRLLSHQVLDPGRLTL VVEGDLAACRAALDAGSAAAQRTGRVISRKEIGRPEEDTQWLIGGFARATTPTEKAPQ VPATPEFAEALLALLASVRQGMTAGEVAAHFGWPLEQARNVLEQLFSDGALRKRSSRY RIKN" misc_feature complement(2565162..2565653) /gene="eutK" /locus_tag="STM2455" /note="ethanolamine utilization microcompartment protein EutK; Region: PRK15466" /db_xref="CDD:185363" misc_feature complement(order(2565408..2565410,2565417..2565422, 2565426..2565428,2565432..2565440,2565531..2565539, 2565546..2565548,2565561..2565563,2565579..2565584, 2565591..2565593,2565618..2565620,2565627..2565629)) /gene="eutK" /locus_tag="STM2455" /note="Hexamer interface [polypeptide binding]; other site" /db_xref="CDD:132885" misc_feature complement(2565546..2565548) /gene="eutK" /locus_tag="STM2455" /note="Hexagonal pore residue [active]" /db_xref="CDD:132885" regulatory complement(2565661..2565666) /regulatory_class="ribosome_binding_site" /gene="eutK" /locus_tag="STM2455" /note="putative RBS for eutK; RegulonDB:STMS1H002572" gene complement(2565666..2566336) /gene="eutL" /locus_tag="STM2456" /db_xref="GeneID:1253978" CDS complement(2565666..2566325) /gene="eutL" /locus_tag="STM2456" /note="ethanolamine utilization; ethanolamine utilization protein EUTL. (SW:EUTL_SALTY)" /codon_start=1 /transl_table=11 /product="putative carboxysome structural protein" /protein_id="NP_461391.1" /db_xref="GeneID:1253978" /translation="MPALDLIRPSVTAMRVIASVNDGFARELKLPPHIRSLGLITADS DDVTYIAADEATKQAMVEVVYGRSLYAGAAHGPSPTAGEVLIMLGGPNPAEVRAGLDA MVASIENGAAFQWANDAENTAFLAHVVSRTGSYLSSTAGIALGDPMAYLVAPPLEATF GIDAAMKSADVQLVTYVPPPSETNYSAAFLTGSQAACKAACNAFTDAVLDIARNPVQR A" misc_feature complement(2565672..2566322) /gene="eutL" /locus_tag="STM2456" /note="ethanolamine utilization microcompartment protein EutL; Region: PRK15405" /db_xref="CDD:185303" regulatory complement(2566331..2566336) /regulatory_class="ribosome_binding_site" /gene="eutL" /locus_tag="STM2456" /note="putative RBS for eutL; RegulonDB:STMS1H002573" gene complement(2566335..2567245) /gene="eutC" /locus_tag="STM2457" /db_xref="GeneID:1253979" CDS complement(2566335..2567231) /gene="eutC" /locus_tag="STM2457" /EC_number="4.3.1.7" /note="ethanolamine ammonia-lyase light chain. (SW:EUTC_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine ammonia-lyase, light chain" /protein_id="NP_461392.1" /db_xref="GeneID:1253979" /translation="MDQKQIEEIVRSVMASMGQDVPQPAAPSTQEGAKPQCAAPTVTE SCALDLGSAEAKAWIGVENPHRADVLTELRRSTAARVCTGRAGPRPRTQALLRFLADH SRSKDTVLKEVPEEWVKAQGLLEVRSEISDKNLYLTRPDMGRRLSPEAIDALKSQCVM NPDVQVVVSDGLSTDAITANYEEILPPLLAGLKQAGLNVGTPFFVRYGRVKIEDQIGE ILGAKVVILLVGERPGLGQSESLSCYAVYSPRVATTVEADRTCISNIHQGGTPPVEAA AVIVDLAKRMLEQKASGINMTR" misc_feature complement(2566347..2567078) /gene="eutC" /locus_tag="STM2457" /note="Ethanolamine ammonia-lyase, small subunit [Amino acid transport and metabolism]; Region: EutC; COG4302" /db_xref="CDD:443443" regulatory complement(2567240..2567245) /regulatory_class="ribosome_binding_site" /gene="eutC" /locus_tag="STM2457" /note="putative RBS for eutC; RegulonDB:STMS1H002574" gene complement(2567250..2568624) /gene="eutB" /locus_tag="STM2458" /db_xref="GeneID:1253980" CDS complement(2567250..2568611) /gene="eutB" /locus_tag="STM2458" /EC_number="4.3.1.7" /note="ethanolamine ammonia-lyase heavy chain. (SW:EUTB_SALTY)" /codon_start=1 /transl_table=11 /product="ethanolamine ammonia-lyase, heavy chain" /protein_id="NP_461393.1" /db_xref="GeneID:1253980" /translation="MKLKTTLFGNVYQFKDVKEVLAKANELRSGDVLAGVAAASSQER VAAKQVLSEMTVADIRNNPVIAYEEDCVTRLIQDDVNETAYNRIKNWSISELREYVLS DETSVDDIAFTRKGLTSEVVAAVAKICSNADLIYGGKKMPVIKKANTTIGIPGTFSCR LQPNDTRDDVQSIAAQIYEGLSFGAGDAVIGVNPVTDDVENLTRVLDTVYGVIDKFNI PTQGCVLAHVTTQIEAIRRGAPGGLIFQSICGSEKGLKEFGVELAMLDEARAVGAEFN RIAGENCLYFETGQGSALSAGANFGADQVTMEARNYGLARHYDPFLVNTVVGFIGPEY LYNDRQIIRAGLEDHFMGKLSGISMGCDCCYTNHADADQNLNENLMILLATAGCNYIM GMPLGDDIMLNYQTTAFHDTATVRQLLNLRPSPEFERWLETMGIMANGRLTKRAGDPS LFF" misc_feature complement(2567253..2568608) /gene="eutB" /locus_tag="STM2458" /note="Ethanolamine ammonia-lyase, large subunit [Amino acid transport and metabolism]; Region: EutB; COG4303" /db_xref="CDD:443444" regulatory complement(2568619..2568624) /regulatory_class="ribosome_binding_site" /gene="eutB" /locus_tag="STM2458" /note="putative RBS for eutB; RegulonDB:STMS1H002575" gene complement(2568623..2570040) /gene="eutA" /locus_tag="STM2459" /db_xref="GeneID:1253981" CDS complement(2568623..2570026) /gene="eutA" /locus_tag="STM2459" /note="chaperonin in ethanolamine utilization; ethanolamine utilization protein EUTA. (SW:EUTA_SALTY)" /codon_start=1 /transl_table=11 /product="CPPZ-55 prophage protein" /protein_id="NP_461394.1" /db_xref="GeneID:1253981" /translation="MNTRQLLSVGIDIGTTTTQVIFSRLELVNRAAVSQVPRYEFIKR DISWQSPVFFTPVDKQGGLKEVELKALILAQYQAAGIAPESVDSGAIIITGESAKTRN ARPAVMALSQSLGDFVVASAGPHLESVIAGHGAGAQSLSEQRMCRVLNIDIGGGTSNY ALFDAGKVSGTACLNVGGRLLETDAQGRVVYAHQPGQMIIDEVFGSGTDARALAAAQL GQVARRMADLIVEVITGALSPLAQSLMQTGLLPADITPEVITLSGGVGECYRNQPADP FCFSDIGPLLATALHEHPRLREMNVQFPAQTVRATVIGAGAHTLSLSGSTIWLEDVQL PLRNLPVAIPQDDADLVNAWRQALLQLDLDPQTDAYVLALPATLPVRYAALLTVINAL TAFVARYPNPHPLLVVAEQDFGKALGMLLRPQLPQLPLAVIDEVVVRAGDYIDIGTPL FGGSVVPVTVKSLAFPS" misc_feature complement(2568626..2570026) /gene="eutA" /locus_tag="STM2459" /note="ethanolamine ammonia-lyase reactivating factor EutA; Region: eutA; PRK10719" /db_xref="CDD:236743" gene complement(2570023..2571264) /gene="eutH" /locus_tag="STM2460" /db_xref="GeneID:1253982" CDS complement(2570023..2571249) /gene="eutH" /locus_tag="STM2460" /note="ethanolamine utilization; ethanolamine utilization protein EUTH . (SW:EUTH_SALTY)" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_461395.1" /db_xref="GeneID:1253982" /translation="MGINEIIMYIMMFFMLIAAVDRILSQFGGSARFLGKFGKSIEGS GGQFEEGFMAMGALGLAMVGMTALAPVLAHVLGPVIIPVYEMLGANPSMFAGTLLACD MGGFFLAKELAGGDVAAWLYSGLILGSMMGPTIVFSIPVALGIIEPSDRRYLALGVLA GIVTIPIGCIAGGLIAMYSGVQINGQPVEFTFALILMNMIPVLIVAVLVALGLKFIPE KMINGFQIFAKFLVALITIGLAAAVVKFLLGWELIPGLDPIFMAPGDKPGEVMRAIEV IGSISCVLLGAYPMVLLLTRWFEKPLMNVGKLLNVNNIAAAGMVATLANNIPMFGMMK QMDTRGKVINCAFAVSAAFALGDHLGFAAANMNAMIFPMIVGKLIGGVTAIGVAMMLV PKDDAAQVKTEAEAQS" misc_feature complement(2570035..2571249) /gene="eutH" /locus_tag="STM2460" /note="Ethanolamine transporter EutH, required for ethanolamine utilization at low pH [Amino acid transport and metabolism]; Region: EutH; COG3192" /db_xref="CDD:442425" regulatory complement(2570035..2570040) /regulatory_class="ribosome_binding_site" /gene="eutH" /locus_tag="STM2460" /note="putative RBS for eutA; RegulonDB:STMS1H002576" regulatory complement(2571259..2571264) /regulatory_class="ribosome_binding_site" /gene="eutH" /locus_tag="STM2460" /note="putative RBS for eutH; RegulonDB:STMS1H002577" gene complement(2571369..2572569) /gene="eutG" /locus_tag="STM2461" /db_xref="GeneID:1253983" CDS complement(2571369..2572556) /gene="eutG" /locus_tag="STM2461" /note="ethanolamine utilization protein EUTG. (SW:EUTG_SALTY)" /codon_start=1 /transl_table=11 /product="putative transport protein in ethanolamine utilization" /protein_id="NP_461396.1" /db_xref="GeneID:1253983" /translation="MQAELQTALFQAFDTLNLQRVKTFSVPPVTLCGLGALGACGQEA QARGVSHLFVMVDSFLHQAGMTAPLARSLAMKGVAMTVWPCPPGEPCITDVCAAVAQL REAACDGVVAFGGGSVLDAAKAVALLVTNPDQTLSAMTEHSTLRPRLPLIAVPTTAGT GSETTNVTVIIDAVSGRKQVLAHASLMPDVAILDAAVTEGVPPNVTAMTGIDALTHAI EAYSALNATPFTDSLAIGAIAMIGKSLPKAVGYGHDLAARENMLLASCMAGMAFSSAG LGLCHAMAHQPGAALHIPHGQANAMLLPTVMGFNRMVCRERFSQIGRALTNKKSDDRD AIAAVCELIAEVGQSKRLADAGAKPEHYSAWAQAALEDICLRSNPRTATQAQIIDLYA AAG" misc_feature complement(2571372..2572556) /gene="eutG" /locus_tag="STM2461" /note="ethanolamine utilization ethanol dehydrogenase EutG; Region: PRK15454" /db_xref="CDD:185351" misc_feature complement(order(2571672..2571674,2571702..2571704, 2571714..2571716,2571909..2571911,2571921..2571923, 2571942..2571944,2571966..2571968,2572020..2572025, 2572080..2572082,2572086..2572091,2572188..2572190, 2572197..2572199,2572206..2572214,2572386..2572388)) /gene="eutG" /locus_tag="STM2461" /note="active site" /db_xref="CDD:341481" misc_feature complement(order(2571672..2571674,2571714..2571716, 2571909..2571911,2571921..2571923)) /gene="eutG" /locus_tag="STM2461" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:341481" gene complement(2572546..2573397) /gene="eutJ" /locus_tag="STM2462" /db_xref="GeneID:1253984" CDS complement(2572546..2573385) /gene="eutJ" /locus_tag="STM2462" /note="ethanolamine utilization protein EUTJ. (SW:EUTJ_SALTY)" /codon_start=1 /transl_table=11 /product="putative heatshock protein (Hsp70)" /protein_id="NP_461397.1" /db_xref="GeneID:1253984" /translation="MAHDEQLWLTPRLQKAAALCNQTPAASDTPLWLGVDLGTCDVVS MVVDGNAQPVAVCLDWADVVRDGIVWDFFGAVTLVRRHLDTLEQQLGCRFTHAATSFP PGTDPRISINVLESAGLEVSHVLDEPTAVADLLALDNAGVVDIGGGTTGIAIVKQGKV TYSADEATGGHHISLTLAGNRRIPLEEAEQYKRSNAQEIWPVVKPVYEKMAEIVARHI EGQGIADLWLAGGSCMQPGVEALFRQRFPELQVHLPQHSLFMTPLAIANSGRAKAEGL YAS" misc_feature complement(2572579..2573364) /gene="eutJ" /locus_tag="STM2462" /note="ethanolamine utilization protein EutJ; Provisional; Region: PRK15080" /db_xref="CDD:237904" regulatory complement(2572564..2572569) /regulatory_class="ribosome_binding_site" /gene="eutJ" /locus_tag="STM2462" /note="putative RBS for eutG; RegulonDB:STMS1H002578" regulatory complement(2573392..2573397) /regulatory_class="ribosome_binding_site" /gene="eutJ" /locus_tag="STM2462" /note="putative RBS for eutJ; RegulonDB:STMS1H002579" gene complement(2573396..2574813) /gene="eutE" /locus_tag="STM2463" /db_xref="GeneID:1253985" CDS complement(2573396..2574799) /gene="eutE" /locus_tag="STM2463" /note="ethanolamine utilization protein EUTE. (SW:EUTE_SALTY)" /codon_start=1 /transl_table=11 /product="putative aldehyde oxidoreductase in ethanolamine utilization" /protein_id="NP_461398.1" /db_xref="GeneID:1253985" /translation="MNQQDIEQVVKAVLLKMKDSSQPASTVHEMGVFASLDDAVAAAK RAQQGLKSVAMRQLAIHAIREAGEKHARELAELAVSETGMGRVDDKFAKNVAQARGTP GVECLSPQVLTGDNGLTLIENAPWGVVASVTPSTNPAATVINNAISLIAAGNSVVFAP HPAAKKVSQRAITLLNQAVVAAGGPENLLVTVANPDIETAQRLFKYPGIGLLVVTGGE AVVDAARKHTNKRLIAAGAGNPPVVVDETADLPRAAQSIVKGASFDNNIICADEKVLI VVDSVADELMRLMEGQHAVKLTAAQAEQLQPVLLKNIDERGKGTVSRDWVGRDAGKIA AAIGLNVPDQTRLLFVETPANHPFAVTEMMMPVLPVVRVANVEEAIALAVQLEGGCHH TAAMHSRNIDNMNQMANAIDTSIFVKNGPCIAGLGLGGEGWTTMTITTPTGEGVTSAR TFVRLRRCVLVDAFRIV" misc_feature complement(2573399..2574799) /gene="eutE" /locus_tag="STM2463" /note="aldehyde dehydrogenase; Region: PRK15398" /db_xref="CDD:237956" misc_feature complement(2573993..2573995) /gene="eutE" /locus_tag="STM2463" /note="putative catalytic cysteine [active]" /db_xref="CDD:143439" regulatory complement(2574808..2574813) /regulatory_class="ribosome_binding_site" /gene="eutE" /locus_tag="STM2463" /note="putative RBS for eutE; RegulonDB:STMS1H002580" gene complement(2574811..2575110) /gene="eutN" /locus_tag="STM2464" /db_xref="GeneID:1253986" CDS complement(2574811..2575110) /gene="eutN" /locus_tag="STM2464" /note="ethanolamine utilization protein EUTN. (SW:EUTN_SALTY)" /codon_start=1 /transl_table=11 /product="putative detox protein in ethanolamine utilization" /protein_id="NP_461399.3" /db_xref="GeneID:1253986" /translation="MEADMKLAVVTGQIVCTVRHQGLAHDKLLMVEMIDAQGNPDGQC AVAIDSIGAGTGEWVLLVSGSSARQAHRSELSPVDLCVIGIVDEVVAGGKVVFHK" misc_feature complement(2574814..2575098) /gene="eutN" /locus_tag="STM2464" /note="ethanolamine utilization microcompartment protein EutN; Region: PRK15448" /db_xref="CDD:185345" misc_feature complement(order(2574850..2574852,2574856..2574858, 2574862..2574864,2574871..2574879,2574907..2574909, 2574925..2574927,2574958..2574960,2574973..2574975, 2575057..2575068,2575072..2575080,2575090..2575092, 2575096..2575098)) /gene="eutN" /locus_tag="STM2464" /note="Hexamer/Pentamer interface [polypeptide binding]; other site" /db_xref="CDD:133473" misc_feature complement(order(2574874..2574876,2574889..2574891, 2574907..2574909,2574979..2574981,2575006..2575008, 2575015..2575017,2575093..2575095)) /gene="eutN" /locus_tag="STM2464" /note="central pore [active]" /db_xref="CDD:133473" gene complement(2575211..2575513) /gene="eutM" /locus_tag="STM2465" /db_xref="GeneID:1253987" CDS complement(2575211..2575501) /gene="eutM" /locus_tag="STM2465" /note="ethanolamine utilization protein EUTM precursor. (SW:EUTM_SALTY)" /codon_start=1 /transl_table=11 /product="putative detox protein in ethanolamine utilization" /protein_id="NP_461400.1" /db_xref="GeneID:1253987" /translation="MEALGMIETRGLVALIEASDAMVKAARVKLVGVKQIGGGLCTAM VRGDVAACKAATDAGAAAAQRIGELVSVHVIPRPHGDLEEVFPISFKGDSNI" misc_feature complement(2575217..2575501) /gene="eutM" /locus_tag="STM2465" /note="ethanolamine utilization microcompartment protein EutM; Region: PRK15474" /db_xref="CDD:185371" misc_feature complement(order(2575259..2575261,2575268..2575273, 2575277..2575279,2575283..2575291,2575382..2575390, 2575397..2575399,2575412..2575414,2575430..2575435, 2575442..2575444,2575469..2575471,2575478..2575480)) /gene="eutM" /locus_tag="STM2465" /note="Hexamer interface [polypeptide binding]; other site" /db_xref="CDD:132885" misc_feature complement(2575397..2575399) /gene="eutM" /locus_tag="STM2465" /note="Hexagonal pore residue [active]" /db_xref="CDD:132885" regulatory complement(2575508..2575513) /regulatory_class="ribosome_binding_site" /gene="eutM" /locus_tag="STM2465" /note="putative RBS for eutM; RegulonDB:STMS1H002581" gene complement(2575542..2576566) /gene="eutD" /locus_tag="STM2466" /db_xref="GeneID:1253988" CDS complement(2575542..2576558) /gene="eutD" /locus_tag="STM2466" /note="ethanolamine utilization protein EUTD. (SW:EUTD_SALTY)" /codon_start=1 /transl_table=11 /product="putative phosphotransacetylase in ethanolamine utilization" /protein_id="NP_461401.1" /db_xref="GeneID:1253988" /translation="MIIERARELAVRAPARVVFPDALDERVLKAAHYLQQYGLARPVL VASPFALRQFALSHRMAMDGIQVIDPHSNLSMRQRFAQRWLARAGEKTPPDAVEKLSD PLMFAAAMVSAGEADVCIAGNLSSTANVLRAGLRVIGLQPGCKTLSSIFLMLPQYAGP ALGFADCSVVPQPTAAQLADIALASADTWRAITGEEPRVAMLSFSSNGSARHPNVANV QQATELVRERAPQLLVDGELQFDAAFVPEVAAQKAPDSPLQGRANVMIFPSLEAGNIG YKITQRLGGYRAVGPLIQGLAAPLHDLSRGCSVQEIIELALVAAVPRQADVSRERSLH TLVE" misc_feature complement(2575581..2576558) /gene="eutD" /locus_tag="STM2466" /note="phosphotransacetylase; Region: eutD; PRK09653" /db_xref="CDD:236609" gene complement(2576555..2577370) /gene="eutT" /locus_tag="STM2467" /db_xref="GeneID:1253989" CDS complement(2576555..2577358) /gene="eutT" /locus_tag="STM2467" /EC_number="2.5.1.17" /note="ethanolamine utilization cobalamin adenosyltransferase. (SW:EUTT_SALTY)" /codon_start=1 /transl_table=11 /product="putative ethanolamine utilization cobalamin adenosyltransferase" /protein_id="NP_461402.1" /db_xref="GeneID:1253989" /translation="MNDFITETWLRANHTLSEGSEIHLPADARLTPSARELLESRRLR IKFLDPQGRLFVDDDEQQPQPVHGLTSSDTHPQACCELCRQPVVKKPDTLTHLTADKM VAKSDPRLGFRAALDSAIALTVWLQIELAEPWQPWLFDIRSRLGNIMRADAIDEPLAA QSIVGLNEDELHRLSHQPLRYLDHDHLVPEASHGRDAALLNLLRTKVRETETLAAQVF ITRSFEVLRPDILQALNRLSSTVYVMMILSVAKHPLTVAQIQQRLGEKP" misc_feature complement(2576558..2577358) /gene="eutT" /locus_tag="STM2467" /note="ethanolamine utilization cob(I)yrinic acid a,c-diamide adenosyltransferase EutT; Region: PRK15020" /db_xref="CDD:237884" regulatory complement(2576561..2576566) /regulatory_class="ribosome_binding_site" /gene="eutT" /locus_tag="STM2467" /note="putative RBS for eutD; RegulonDB:STMS1H002582" gene complement(2577355..2578060) /gene="eutQ" /locus_tag="STM2468" /db_xref="GeneID:1253990" CDS complement(2577355..2578044) /gene="eutQ" /locus_tag="STM2468" /note="ethanolamine utilization protein EUTQ. (SW:EUTQ_SALTY)" /codon_start=1 /transl_table=11 /product="putative ethanolamine utilization protein" /protein_id="NP_461403.1" /db_xref="GeneID:1253990" /translation="MKKLITANDIRAAHARGEQAMSVVLRASIITPEAREVAELLGFT ITECDESVPASTSAQACKSESQRIREAIIAQLPEGQFTESLVAQLMEKVLKEKQSLEL GTMQPSFTSVTGKGGVKVIDGSSVKFGRFDGAEPHCVGLTDLVTEQDGSSMAAGFMQW DNAFFPWTLNYDEIDMVLEGELHVRHEGETMIAKAGDVMFIPKGSSIEFGTPTSVRFL YVAWPANWQSV" misc_feature complement(2577358..2578044) /gene="eutQ" /locus_tag="STM2468" /note="ethanolamine utilization acetate kinase EutQ; Region: PRK15457" /db_xref="CDD:185354" misc_feature complement(order(2577379..2577381,2577385..2577387, 2577391..2577393,2577439..2577441,2577445..2577459, 2577466..2577474,2577478..2577480,2577487..2577489, 2577511..2577513,2577517..2577519,2577523..2577525, 2577529..2577531,2577580..2577582)) /gene="eutQ" /locus_tag="STM2468" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:380357" regulatory complement(2577365..2577370) /regulatory_class="ribosome_binding_site" /gene="eutQ" /locus_tag="STM2468" /note="putative RBS for eutT; RegulonDB:STMS1H002583" gene complement(2578022..2578510) /gene="eutP" /locus_tag="STM2469" /db_xref="GeneID:1253991" CDS complement(2578022..2578501) /gene="eutP" /locus_tag="STM2469" /note="ethanolamine utilization protein EUTP. (SW:EUTP_SALTY)" /codon_start=1 /transl_table=11 /product="putative ethanolamine utilization protein" /protein_id="NP_461404.1" /db_xref="GeneID:1253991" /translation="MKRIAFVGAVGAGKTTLFNALRGNYSLARKTQAVEFNDHGDIDT PGEYFSHPRWYHALITTLQDVDTLIYVHAANDKESRLPAGLLDVGTRKRHIAVISKTD MPDADVAATRQLLCEIGFREPIFELNGHDPQSVRQLVDYLAALSEQEEEAGEKTYHS" misc_feature complement(2578025..2578501) /gene="eutP" /locus_tag="STM2469" /note="ethanolamine utilization acetate kinase EutP; Region: PRK15467" /db_xref="CDD:185364" misc_feature complement(2578457..2578480) /gene="eutP" /locus_tag="STM2469" /note="G1 box; other site" /db_xref="CDD:206648" misc_feature complement(order(2578112..2578120,2578196..2578198, 2578202..2578207,2578364..2578366,2578454..2578474)) /gene="eutP" /locus_tag="STM2469" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206648" misc_feature complement(2578409..2578411) /gene="eutP" /locus_tag="STM2469" /note="G2 box; other site" /db_xref="CDD:206648" misc_feature complement(2578391..2578399) /gene="eutP" /locus_tag="STM2469" /note="Switch I region; other site" /db_xref="CDD:206648" misc_feature complement(2578364..2578375) /gene="eutP" /locus_tag="STM2469" /note="G3 box; other site" /db_xref="CDD:206648" misc_feature complement(order(2578301..2578306,2578364..2578369)) /gene="eutP" /locus_tag="STM2469" /note="Switch II region; other site" /db_xref="CDD:206648" misc_feature complement(2578196..2578207) /gene="eutP" /locus_tag="STM2469" /note="G4 box; other site" /db_xref="CDD:206648" misc_feature complement(2578112..2578120) /gene="eutP" /locus_tag="STM2469" /note="G5 box; other site" /db_xref="CDD:206648" regulatory complement(2578055..2578060) /regulatory_class="ribosome_binding_site" /gene="eutP" /locus_tag="STM2469" /note="putative RBS for eutQ; RegulonDB:STMS1H002584" regulatory complement(2578505..2578510) /regulatory_class="ribosome_binding_site" /gene="eutP" /locus_tag="STM2469" /note="putative RBS for eutP; RegulonDB:STMS1H002585" gene complement(2578514..2578865) /gene="eutS" /locus_tag="STM2470" /db_xref="GeneID:1253992" CDS complement(2578514..2578849) /gene="eutS" /locus_tag="STM2470" /note="ethanolamine utilization protein EUTS. (SW:EUTS_SALTY)" /codon_start=1 /transl_table=11 /product="putative ethanol utilization carboxysome structural protein" /protein_id="NP_461405.1" /db_xref="GeneID:1253992" /translation="MNKERIIQEFVPGKQVTLAHLIAHPGEELAKKIGVPDAGAIGIM TLTPGETAMIAGDLAMKAADVHIGFLDRFSGALVIYGTVGAVEEALLQTVSGLGRLLN FTLCELTKS" misc_feature complement(2578517..2578849) /gene="eutS" /locus_tag="STM2470" /note="ethanolamine utilization microcompartment protein EutS; Region: PRK15468" /db_xref="CDD:185365" misc_feature complement(order(2578628..2578630,2578634..2578636, 2578649..2578651,2578667..2578672,2578679..2578681, 2578706..2578708,2578715..2578717)) /gene="eutS" /locus_tag="STM2470" /note="putative hexamer interface [polypeptide binding]; other site" /db_xref="CDD:132886" misc_feature complement(2578634..2578636) /gene="eutS" /locus_tag="STM2470" /note="putative hexagonal pore [active]" /db_xref="CDD:132886" regulatory complement(2578860..2578865) /regulatory_class="ribosome_binding_site" /gene="eutS" /locus_tag="STM2470" /note="putative RBS for eutS; RegulonDB:STMS1H002586" mobile_element complement(2579223..2579931) /mobile_element_type="insertion sequence:IS200_3" gene complement(2579330..2579794) /gene="tnpA_3" /locus_tag="STM2471" /db_xref="GeneID:1253993" CDS complement(2579330..2579788) /gene="tnpA_3" /locus_tag="STM2471" /note="transposase for insertion sequence element is200 (SW:T200_SALTY)" /codon_start=1 /transl_table=11 /product="transposase for IS200" /protein_id="NP_461406.1" /db_xref="GeneID:1253993" /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKL CEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRN REFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK" misc_feature complement(2579405..2579776) /gene="tnpA_3" /locus_tag="STM2471" /note="Transposase IS200 like; Region: Y1_Tnp; cl00848" /db_xref="CDD:469954" regulatory complement(2579789..2579794) /regulatory_class="ribosome_binding_site" /gene="tnpA_3" /locus_tag="STM2471" /note="putative RBS for tnpA_3; RegulonDB:STMS1H002587" gene complement(2579978..2582270) /gene="maeB" /locus_tag="STM2472" /db_xref="GeneID:1253994" CDS complement(2579978..2582257) /gene="maeB" /locus_tag="STM2472" /EC_number="1.1.1.40" /note="NADP-dependent malic enzyme. (SW:MAO2_SALTY)" /codon_start=1 /transl_table=11 /product="putative transferase" /protein_id="NP_461407.1" /db_xref="GeneID:1253994" /translation="MDEQLKQSALDFHEFPVPGKIQVSPTKPLATQRDLALAYSPGVA APCLEIEKDPLAAYKYTARGNLVAVISNGTAVLGLGNIGALAGKPVMEGKGVLFKKFA GIDVFDIEVDELDPDKFINVVAALEPTFGGINLEDIKAPECFYIEQKLRERMNIPVFH DDQHGTAIISTAAILNGLRVVEKNISDVRMVVSGAGAAAIACMNLLVALGMQKHNIVV CDSKGVIYKGREPNMAETKAAYAVDDSGKRTLDEVIDGADIFLGCSGPKVLTQEMVKK MARAPMILALANPEPEILPPLAKEVRPDAIICTGRSDYPNQVNNVLCFPFIFRGALDV GATAINEEMKLAAVRAIAELAHAEQSEVVASAYGDQDLSFGPEYIIPKPFDPRLIVKI APAVAKAAMDSGVATRPIADFDAYIDKLTEFVYKTNLFMKPIFSQARKDPKRVVLPEG EEARVLHATQELITLGLAKPILIGRPSVIEMRIQKLGLQIKAGVDFEIVNNESDPRFK EYWSEYYQIMKRRGITQEQAQRAMIGNHTAIGAIMVQRGEADAMICGTIGDYHEHFSV VKAVFGYRDGVHTAGAMNALLLPSGNTFIADTYVNEDPTPEQLAEIAVMAAETVRRFG IEPKVALLSHSNFGSSNSLSASKMRETLERVRERAPDLMIDGEMHGDAALVESIRNDR MPDSPLKGAANILVMPNMEAARISYNLLRVSSSEGVTVGPVLMGVSKPVHVLTPIASV RRIVNMVALAVVEAQTTPL" misc_feature complement(2579990..2582251) /gene="maeB" /locus_tag="STM2472" /note="bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed; Region: PRK07232" /db_xref="CDD:235976" regulatory complement(2582265..2582270) /regulatory_class="ribosome_binding_site" /gene="maeB" /locus_tag="STM2472" /note="putative RBS for maeB; RegulonDB:STMS1H002588" gene 2582515..2583479 /gene="talA" /locus_tag="STM2473" /db_xref="GeneID:1253995" regulatory 2582515..2582520 /regulatory_class="ribosome_binding_site" /gene="talA" /locus_tag="STM2473" /note="putative RBS for talA; RegulonDB:STMS1H002589" CDS 2582529..2583479 /gene="talA" /locus_tag="STM2473" /EC_number="2.2.1.2" /note="similar to E. coli transaldolase A (AAC75517.1); Blastp hit to AAC75517.1 (316 aa), 89% identity in aa 1 - 316" /codon_start=1 /transl_table=11 /product="transaldolase A" /protein_id="NP_461408.1" /db_xref="GeneID:1253995" /translation="MNQLDGIKQFTTVVADSGDIESIRHYQPQDATTNPSLLLKAAGL EQYGHLIEDAIAWGKKHGGTQEQQVAAASDKLAVNFGAEILKSIPGRVSTEVDARLSF DKEKSIEKARHLVDLYQQQGVDKSRILIKLAATWEGIRAAGQLEKEGINCNLTLLFSF AQARACAEAGVYLISPFVGRIYDWYQARSPLEPYVVEEDPGVKSVRNIYDYFKQHRYE TIVMGASFRRTEQILALTGCDRLTISPNLLKELKEKEEPVIRKLVPSSQMFHRPTPMT EAEFRWEHNQDAMAVEKLSEGIRLFAVDQRKLEDLLAAKL" misc_feature 2582529..2583476 /gene="talA" /locus_tag="STM2473" /note="transaldolase A; Provisional; Region: PRK12346" /db_xref="CDD:183458" misc_feature order(2582574..2582576,2582622..2582624,2582628..2582633, 2582805..2582807,2582811..2582813,2582919..2582921, 2582985..2582987,2582991..2582993,2583051..2583053, 2583066..2583068) /gene="talA" /locus_tag="STM2473" /note="active site" /db_xref="CDD:188644" misc_feature order(2582835..2582837,2583360..2583362,2583369..2583371, 2583381..2583386,2583402..2583404,2583411..2583413, 2583423..2583425) /gene="talA" /locus_tag="STM2473" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188644" misc_feature 2582919..2582921 /gene="talA" /locus_tag="STM2473" /note="catalytic residue [active]" /db_xref="CDD:188644" gene 2583487..2585499 /gene="tktB" /locus_tag="STM2474" /db_xref="GeneID:1253996" regulatory 2583487..2583492 /regulatory_class="ribosome_binding_site" /gene="tktB" /locus_tag="STM2474" /note="putative RBS for tktB; RegulonDB:STMS1H002590" CDS 2583499..2585499 /gene="tktB" /locus_tag="STM2474" /EC_number="2.2.1.1" /note="similar to E. coli transketolase 2 isozyme (AAC75518.1); Blastp hit to AAC75518.1 (667 aa), 92% identity in aa 1 - 666" /codon_start=1 /transl_table=11 /product="transketolase 2 isozyme" /protein_id="NP_461409.1" /db_xref="GeneID:1253996" /translation="MSRKDLANAIRALSMDAVQKANSGHPGAPMGMADIAEVLWNDFL KHNPTDPTWYDRDRFILSNGHASMLLYSLLHLTGYDLPLEELKNFRQLHSKTPGHPEI GYTPGVETTTGPLGQGLANAVGLAIAERTLGAQFNRPDHEIVDHYTYVFMGDGCLMEG ISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWFTDDTAKRFEAYHWHVVHDIDGH DPEAVKKAILEAQSVKDKPSLIICRTVIGFGSPNKAGKEESHGAALGEEEVALTRQKL GWHHPAFEIPKEIYRAWDGREKGEKAQQQWQEKFAAYEKAYPELAAEFTRRMSGGLPE AWESATQKFINDLQANPAKIATRKASQNTLNAYGPLLPELLGGSADLAPSNLTIWKGS TSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMFVEYARNAARMAALM KARQIMVYTHDSIGLGEDGPTHQAVEQLASLRLTPNFSTWRPCDQVEAAVGWKLAIER QHGPTALILSRQNLAQVERTPEQVKAIARGGYILKDSGGKPDIILIATGSEMEITLQA AEKLTGEGHNVRVVSLPSTDIFDAQDEAYRESVLPAHVTARVAVEAGIADYWYKYVGL KGAIIGMTGYGESAPADKLFPYFGFTVENIVEKARRVLNIKG" misc_feature 2583502..2585484 /gene="tktB" /locus_tag="STM2474" /note="Transketolase [Carbohydrate transport and metabolism]; Region: TktA; COG0021" /db_xref="CDD:439792" gene complement(2585562..2585800) /locus_tag="STM2475" /db_xref="GeneID:1253997" CDS complement(2585562..2585792) /locus_tag="STM2475" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461410.1" /db_xref="GeneID:1253997" /translation="MKINNGPVLCPHCGCLSAYYEIDRLAAIREKVNKEGGSAAWDST LQAHKKKAFCLMCHKSIDEVVIGQSDAPESTK" regulatory complement(2585795..2585800) /regulatory_class="ribosome_binding_site" /locus_tag="STM2475" /note="putative RBS for STM2475; RegulonDB:STMS1H002591" gene complement(2585920..2586980) /gene="ypfG" /locus_tag="STM2476" /db_xref="GeneID:1253998" CDS complement(2585920..2586963) /gene="ypfG" /locus_tag="STM2476" /note="similar to E. coli orf, hypothetical protein (AAC75519.1); Blastp hit to AAC75519.1 (347 aa), 77% identity in aa 1 - 347" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461411.1" /db_xref="GeneID:1253998" /translation="MRYRVILFCLFGLLPVQLLWAAPAQRTFSDWQVTCNNQNFCVAR NTGEHHGLVMTLSRSAGARTDAVLRIDRGGLAPPDAKEAAIAPRLLLDGKPLSFNSPH WRVSPWHLMTGDPATITAFLQTIQDAQAITLKNGVQTLSLAGLKAALLFIDAQQKRVG SETAWIEKGNEPPLSVPPAPALKGIAVINPTPVPLSEEERDDLLDYAAWRVNGIRCSL DPLRRETQVSALTDDKALLIVNCEAGAYNTIDLAWVVSRKKTLVSRAVRLRLPFNRGV ESNDMELMNVFFDEKTRELVTLAKGRGLTDCGIQTRWRYDGDRFRLVRYAEEPSCDSW HGPDAWPTLWITR" misc_feature complement(2585923..2586891) /gene="ypfG" /locus_tag="STM2476" /note="Protein of unknown function (DUF1176); Region: DUF1176; pfam06674" /db_xref="CDD:461982" regulatory complement(2586975..2586980) /regulatory_class="ribosome_binding_site" /gene="ypfG" /locus_tag="STM2476" /note="putative RBS for ypfG; RegulonDB:STMS1H002592" gene complement(2587088..2587674) /gene="yffH" /locus_tag="STM2477" /db_xref="GeneID:1253999" CDS complement(2587088..2587663) /gene="yffH" /locus_tag="STM2477" /note="similar to E. coli orf, hypothetical protein (AAC75520.1); Blastp hit to AAC75520.1 (191 aa), 87% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="putative pyrophosphohydrolase" /protein_id="NP_461412.1" /db_xref="GeneID:1253999" /translation="MSQTITLIKDKILSDNYFTLRNITYDLTRRNGEVIRHKREVYDR GNGATILLYNSTKKTVVLVRQFRVATWVNGNQDGMLIETCAGLLDNDEPEVCIRKEAI EETGYDVGEVRKIFELYMSPGGVTELIHFFIAEYHDSERASIGGGVEDEEIEVLELPF SRALEMVRSGEIRDGKTVLLLNYLQTSHLMD" misc_feature complement(2587091..2587663) /gene="yffH" /locus_tag="STM2477" /note="GDP-mannose pyrophosphatase NudK; Provisional; Region: PRK15009" /db_xref="CDD:184971" regulatory complement(2587669..2587674) /regulatory_class="ribosome_binding_site" /gene="yffH" /locus_tag="STM2477" /note="putative RBS for yffH; RegulonDB:STMS1H002593" gene 2587855..2589165 /locus_tag="STM2478" /db_xref="GeneID:1254000" regulatory 2587855..2587860 /regulatory_class="ribosome_binding_site" /locus_tag="STM2478" /note="putative RBS for STM2478; RegulonDB:STMS1H002594" CDS 2587867..2589165 /locus_tag="STM2478" /note="similar to E. coli putative beta-lactamase (AAC75483.1); Blastp hit to AAC75483.1 (463 aa), 72% identity in aa 30 - 461" /codon_start=1 /transl_table=11 /product="putative beta-lactamase class C" /protein_id="NP_461413.1" /db_xref="GeneID:1254000" /translation="MKFTLVATVLLTFSLSAFAVEYPVLTTASPDQVGFDSQKLHRLD GWIQNQIDAGYPSINLLVIKDNHIVLQKAWGYAKKYDGSTLLAHPIRATTNTMYDLAS NTKMYATNFALQKLVYEGKIDVNDLVSKYIPGFKDMPGDKIKGKNKLRIIDILHHVAG FPADPQYPNKNVAGKLFSQSKSTTLEMIKKTPLEYQPGSKHIYSDVDYMILGFIIESI TAMPLDRYVETTIYKPLGLKHTVFNPLMKGFTPPQIAATELHGNTRDGVIHFPNIRTN TLWGQVHDEKAWYSMGGVSGHAGLFSDTHDMAVLMQVMLNGGGYGNVKLFDDKTVAQF TRRSPEDATFGLGWRVNGNASMTPTFGVLASPQTYGHTGWTGTLTSIDPVNHMAIVIL GNRPHSPVANPKVNPNVFVSGLLPAATYGWIVDQIYGSLK" misc_feature 2587867..2589162 /locus_tag="STM2478" /note="putative periplasmic esterase; Provisional; Region: PRK03642" /db_xref="CDD:179620" gene complement(2589614..2591584) /gene="aegA" /locus_tag="STM2479" /db_xref="GeneID:1254001" CDS complement(2589614..2591575) /gene="aegA" /locus_tag="STM2479" /note="similar to E. coli putative oxidoreductase, Fe-S subunit (AAC75521.1); Blastp hit to AAC75521.1 (659 aa), 85% identity in aa 1 - 651" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_461414.1" /db_xref="GeneID:1254001" /translation="MNRFIMANSQQCLGCHACEVACVMAHNDERHVLTSQRYQPRITV IKHQHQRSAVTCHHCEDAPCARSCPNGAIAHINDSVQVNAQKCIGCKSCVVACPFGTM QMVLTPVAPNQFKASAHKCDLCQGREQGPACVENCPADALQLVTEDSLTRLAKTRRLR TARQEIRPWHTVDTQHSGAASSKAERMQATPPRGEPDKLAIEARKTTFEEIYLPFRAA QAEREASRCLTCGEHSICEWTCPLHNHIPQWIELVKAGDIDAAVELSHQTNCLPEITG RVCPQDRLCEGACTLRDEYGAVTIGNIERYISDRALSKGWRPDLSDVQKSDKRVAIIG AGPAGLACADVLARHGVSATVYDRHPEIGGLLTFGIPAFKLDKSLLARRREIFSAMGI RFELNCEVGKDISLETLLESYDAVFVGVGTYRSMKADLPNEDAPGVYDALPFLIANTK QVMGLPALPDEPFIDTAGLNVVVLGGGDTAMDCVRTALRHGAANVTCAYRRDEANMPG SKKEVKNAREEGANFEFNVQPVELVLDTHGRASGIRFLRTRLGEPDGQGRRRPVPVPD SEFVMPADAVIMAFGFHPHGMSWLESHGVKVDNWGRIAASVESEFRYQTSNPKIFAGG DAVRGADLVVTAMAEGRHAAQGILDWLAK" misc_feature complement(2589617..2591575) /gene="aegA" /locus_tag="STM2479" /note="putative oxidoreductase Fe-S binding subunit; Reviewed; Region: PRK12769" /db_xref="CDD:183733" regulatory complement(2591579..2591584) /regulatory_class="ribosome_binding_site" /gene="aegA" /locus_tag="STM2479" /note="putative RBS for aegA; RegulonDB:STMS1H002595" gene 2591746..2593461 /gene="narQ" /locus_tag="STM2480" /db_xref="GeneID:1254002" regulatory 2591746..2591751 /regulatory_class="ribosome_binding_site" /gene="narQ" /locus_tag="STM2480" /note="putative RBS for narQ; RegulonDB:STMS1H002596" CDS 2591761..2593461 /gene="narQ" /locus_tag="STM2480" /EC_number="2.7.3.-" /note="similar to E. coli sensor for nitrate reductase system, protein histidine kinase (acts on NarP and narL) (AAC75522.1); Blastp hit to AAC75522.1 (566 aa), 88% identity in aa 3 - 565" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with NarP (NarL)" /protein_id="NP_461415.1" /db_xref="GeneID:1254002" /translation="MTVKRPVSASLAKAFFYIVLLSILSTGSALLTLTSSLRDAEAIN IAGSLRMQSYRLGYDLQSRSPQINAHRQLFQHALNSPVLQNLNAWYVPQAVKTRYERL HANWLEMNSRLQDGDIAWYQTNINNYVNQIDLFVLALQHYAERKVMLVVAISLAGGIG IFTLVFFTLRRIRQQVVRPLNQLVTASQRIEHGQFAPLPLDTSLPNELGLLAKTFSQM SSELHKLYRSLEASVEEKTHDLHEAHRRLEVLYQCSQALNTSQIDVHCFRHILQIVRE HDAAWYLELTVGDNWRISEGTQSPDLPMQMLPVTMQDTVYGELHWQSPNVNASTPLLN SVSTMLGRGLYFNQAQKHFQQLLLMEERATIARELHDSLAQVLSYLRIQLTLLKRAIP EDNAGAQSIMADFSRALNDAYRQLRELLTTFRLTLQQADLPSALHEMLEDLQSQTPAK LTLDCRLPTLALDAQMQVHLLQIVREAVLNAIKHANASEIAVSCVTAPDGDHTVYIRD NGIGIGEPHEPAGHYGLNIMRERAERLGGTLNFSQPSGGGTLVSISFRSSNKEESQLT " misc_feature 2591761..2593434 /gene="narQ" /locus_tag="STM2480" /note="nitrate/nitrite two-component system sensor histidine kinase NarQ; Region: PRK10935" /db_xref="CDD:236800" gene 2593632..2596759 /gene="acrD" /locus_tag="STM2481" /db_xref="GeneID:1254003" regulatory 2593632..2593637 /regulatory_class="ribosome_binding_site" /gene="acrD" /locus_tag="STM2481" /note="putative RBS for acrD; RegulonDB:STMS1H002597" CDS 2593646..2596759 /gene="acrD" /locus_tag="STM2481" /note="similar to E. coli sensitivity to acriflavine, integral membrane protein, possible efflux pump (AAC75523.1); Blastp hit to AAC75523.1 (1037 aa), 94% identity in aa 1 - 1037" /codon_start=1 /transl_table=11 /product="RND family aminoglycoside/multidrug efflux pump" /protein_id="NP_461416.1" /db_xref="GeneID:1254003" /translation="MANFFIDRPIFAWVLAILLCLTGALAIFSLPVEQYPDLAPPNVR ITANYPGASAQTLENTVTQVIEQNMTGLDNLMYMSSQSSGTGQATITLSFIAGTDPDE AVQQVQNQLQSAMRKLPQAVQDQGVTVRKTGDTNILTIAFVSTDGSMDKQDIADYVAS NIQDPLSRVNGVGDIDAYGSQYSMRIWLDPAKLNSFQMTTKDVTDAIESQNAQIAVGQ LGGTPSVDKQALNATINAQSLLQTPQQFRDITLRVNQDGSEVKLGDVATVELGAEKYD YLSRFNGNPASGLGVKLASGANEMATAKLVLDRLNELAQYFPHGLEYKIAYETTSFVK ASIIDVVKTLLEAIALVFLVMYLFLQNFRATLIPTIAVPVVLMGTFSVLYAFGYSINT LTMFAMVLAIGLLVDDAIVVVENVERIMSEEGLTPREATRKSMGQIQGALVGIAMVLS AVFVPMAFFGGTTGAIYRQFSITIVSAMVLSVLVAMILTPALCATLLKPLHKGEQHGQ RGFFGWFNRTFNRNAERYEKGVAKILHRSLRWILIYVLLLGGMVFLFLRLPTSFLPQE DRGMFTTSIQLPSGSTQQQTLKVVEKVENYYFTHEKDNIMSVFSTVGSGPGGNGQNVA RMFVRLKDWDARDPTTGSSFAIIERATKAFNQIKEARVFASSPPAISGLGSSAGFDME LQDHAGAGHDALMAARDQLIELAGKNSSLTRVRHNGLDDSPQLQIDIDQRKAQALGVS IDDINDTLQTAWGSSYVNDFMDRGRVKKVYVQAAAKYRMLPDDINLWYVRNKDGGMVP FSAFATSRWETGSPRLERYNGYSAVEIVGEAAPGVSTGTAMDVMESLVHQLPGGFGLE WTAMSYQERLSGAQAPALYAISLLVVFLCLAALYESWSVPFSVMLVVPLGVIGALLAT WMRGLENDVYFQVGLLTVIGLSAKNAILIVEFANEMNQKGHALLDATLYASRQRLRPI LMTSLAFIFGVLPMATSTGAGSGSQHAVGTGVMGGMISATVLAIFFVPLFFVLIRRRF PLKPRPK" misc_feature 2593646..2596753 /gene="acrD" /locus_tag="STM2481" /note="multidrug efflux RND transporter permease AcrD; Region: PRK10555" /db_xref="CDD:182544" gene 2597322..2597689 /gene="yffB" /locus_tag="STM2482" /db_xref="GeneID:1254004" regulatory 2597322..2597327 /regulatory_class="ribosome_binding_site" /gene="yffB" /locus_tag="STM2482" /note="putative RBS for yffB; RegulonDB:STMS1H002598" CDS 2597333..2597689 /gene="yffB" /locus_tag="STM2482" /note="similar to E. coli orf, hypothetical protein (AAC75524.1); Blastp hit to AAC75524.1 (118 aa), 80% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="putative glutaredoxin family protein" /protein_id="NP_461417.1" /db_xref="GeneID:1254004" /translation="MITLYGIKNCDTIKKARHWLEEHGIDYRFHDYRVDGIDLPLLNT FIAELGWQPLLNTRGTTWRKLDEGHRSGITDADSAAALMVEQPAIIKRPLLCAPGKPM LLGFSESRYQQFFDEV" misc_feature 2597333..2597686 /gene="yffB" /locus_tag="STM2482" /note="putative reductase; Provisional; Region: PRK10853" /db_xref="CDD:182780" misc_feature order(2597360..2597362,2597498..2597500,2597606..2597608, 2597648..2597650) /gene="yffB" /locus_tag="STM2482" /note="putative catalytic residues [active]" /db_xref="CDD:239333" gene 2597681..2598820 /gene="dapE" /locus_tag="STM2483" /db_xref="GeneID:1254005" regulatory 2597681..2597686 /regulatory_class="ribosome_binding_site" /gene="yffB" /locus_tag="STM2482" /note="putative RBS for dapE; RegulonDB:STMS1H002599" CDS 2597693..2598820 /gene="dapE" /locus_tag="STM2483" /EC_number="3.5.1.18" /note="similar to E. coli N-succinyl-diaminopimelate deacylase (AAC75525.1); Blastp hit to AAC75525.1 (375 aa), 94% identity in aa 1 - 375" /codon_start=1 /transl_table=11 /product="N-succinyl-diaminopimelate deacylase" /protein_id="NP_461418.1" /db_xref="GeneID:1254005" /translation="MSCPVIELTQQLIRRPSLSPDDAGCQALMIERLRKIGFTIEHMD FGDTQNFWAWRGRGETLAFAGHTDVVPAGDVDRWINPPFEPTIRDGMLFGRGAADMKG SLAAMVVAAERFVAQHPHHRGRLAFLITSDEEASAKNGTVKVVEALMARNERLDYCLV GEPSSTEIVGDVVKNGRRGSLTCNLTIHGVQGHVAYPHLADNPVHRAAPFLNELVAIE WDRGNDFFPATSMQVANIQAGTGSNNVIPGELFVQFNFRFSTELTDEMIKERVHALLE KHQLRYTVDWWLSGQPFLTARGKLVDAVVNAIEHYNEIKPQLLTTGGTSDGRFIARMG AQVVELGPVNATIHKINECVNAADLQLLARMYQRIMEQLVA" misc_feature 2597696..2598817 /gene="dapE" /locus_tag="STM2483" /note="succinyl-diaminopimelate desuccinylase; Reviewed; Region: PRK13009" /db_xref="CDD:237265" misc_feature order(2598236..2598238,2598269..2598280,2598296..2598298, 2598302..2598307,2598314..2598319,2598323..2598328, 2598335..2598337,2598380..2598382,2598386..2598409, 2598428..2598433,2598455..2598457,2598461..2598463, 2598656..2598658) /gene="dapE" /locus_tag="STM2483" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349886" gene 2598841..2599048 /locus_tag="STM2484" /db_xref="GeneID:1254006" regulatory 2598841..2598846 /regulatory_class="ribosome_binding_site" /locus_tag="STM2484" /note="putative RBS for STM2484; RegulonDB:STMS1H002600" CDS 2598848..2599048 /locus_tag="STM2484" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461419.1" /db_xref="GeneID:1254006" /translation="MDWLAKYWWILVLVFLVGVLLNVIKDLKRIDHKKFLANKPELPP HRDFNDKWDDEDDWPKKDQPKK" misc_feature 2598848..2599033 /locus_tag="STM2484" /note="hypothetical protein; Provisional; Region: PRK13664" /db_xref="CDD:184221" gene complement(2599075..2601104) /gene="ypfI" /locus_tag="STM2485" /db_xref="GeneID:1254007" CDS complement(2599075..2601093) /gene="ypfI" /locus_tag="STM2485" /note="similar to E. coli orf, hypothetical protein (AAC75527.1); Blastp hit to AAC75527.1 (671 aa), 71% identity in aa 1 - 662" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_461420.1" /db_xref="GeneID:1254007" /translation="MSDIDALQALTSQMTQEGIRRLLVISGDAAWCRKRAEAIRAALP GDWLWVAPDAPAQPCCTPQALQTLLGREFRHAIFDAWQGFDAAAFAALSGTLQAGSWL LLLMPPYETWESRPDTDSLRWSDCAQPIPTPQFAQHLKRTLSRDPQTLLWRQRQPFCW PSYPSRECWRPATGEPQPEQAAILSRLREMPPGVATVIAPRGRGKSALAGQFISRMAG TAIVTAPAKTATDILAAFAGERFCFMAPDALLASGARADWLVVDEAAAIPTPLLLQLV SRFPRILLTTTVQGYEGTGRGFLLKFCARFPQLHRFTLRQPVRWAPECPLENIVSEAL IFDDEAFAQAPHGAIEISAFYQQAWVNTPALPRAVYQLLSGAHYRTSPLDLRRMMDAP GQHFLQATANNRVAGALWLVEEGGLSAELSQAVWCGFRRPRGNLVAQSLAAHGSDPLA ATLVGRRVSRIAVHPARQREGIGQQLIACACMQAAQCDYLSVSFGYTPKLWRFWQRCG FVLVRMGNHREASSGCYTAMALLPLSDAGKRLAQQEHRRLRRDADILTQWNGEAIPLA ALREQALNDEDWRELVGFAFAHRPLLTSLGCLHRLLQYSALPLPALRGRLEEKASDAE LCARLRISGRKALLALQRAQAAQALIALDAGRTQSLRDVMPGGGDHAG" misc_feature complement(2599189..2601081) /gene="ypfI" /locus_tag="STM2485" /note="tRNA(Met) C34 N-acetyltransferase TmcA [Translation, ribosomal structure and biogenesis]; Region: TmcA; COG1444" /db_xref="CDD:441053" regulatory complement(2601099..2601104) /regulatory_class="ribosome_binding_site" /gene="ypfI" /locus_tag="STM2485" /note="putative RBS for ypfI; RegulonDB:STMS1H002601" gene complement(2601109..2601981) /locus_tag="STM2486" /db_xref="GeneID:1254008" CDS complement(2601109..2601972) /locus_tag="STM2486" /note="similar to E. coli orf, hypothetical protein (AAC75528.1); Blastp hit to AAC75528.1 (287 aa), 92% identity in aa 1 - 286" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461421.1" /db_xref="GeneID:1254008" /translation="MRWQGRRESNNVEDRRNRPGGPSLGGPGFRLPRGKGGIILLVVV LVAGYYGVDLTGLLTGQPVSQQQSTRSISPNDDEAAKFTSVILATTEDTWGQLFQKMG RGYQQPKLVMYRGMTRTGCGAGQSVMGPFYCPADGTVYIDLSFYDDMKNKLGADGDFA QGYVIAHEVGHHVQKLLGIEPKVRQLQQNASQTEVNRLSVRMELQADCFAGVWGHSMQ QQGVLEAGDLEEALNAAQAIGDDRLQQQGQGRVVPDSFTHGTSEQRYSWFKRGFDSGD PAQCNTFGKNF" misc_feature complement(2601124..2601972) /locus_tag="STM2486" /note="Putative neutral zinc metallopeptidase; Region: Zn_peptidase; pfam04228" /db_xref="CDD:427802" regulatory complement(2601976..2601981) /regulatory_class="ribosome_binding_site" /locus_tag="STM2486" /note="putative RBS for STM2486; RegulonDB:STMS1H002602" gene complement(2602103..2602982) /gene="purC" /locus_tag="STM2487" /db_xref="GeneID:1254009" CDS complement(2602103..2602816) /gene="purC" /locus_tag="STM2487" /EC_number="6.3.2.6" /note="SAICAR synthetase; similar to E. coli phosphoribosylaminoimidazole-succinocarboxamide synthetase = SAICAR synthetase (AAC75529.1); Blastp hit to AAC75529.1 (237 aa), 94% identity in aa 1 - 237" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole-succinocarboxamide synthetase" /protein_id="NP_461422.1" /db_xref="GeneID:1254009" /translation="MQKQAELYRGKAKTVYSTENPDLLVLEFRNDTSAGDGARIEQFD RKGMVNNKFNHFIMTKLAEAGIPTQMERLLSDTECLVKKLEMVPVECVVRNRAAGSLV KRLGVEEGMELNPPIFDLFLKNDALHDPMVNSSYCETFGWVSQENLARMKELTYKAND VLKKLFDDAGLILVDFKLEFGLYKGEVVLGDEFSPDGSRLWDKETLDKMDKDRFRQSL GGLIEAYEAVAHRLGVKLD" misc_feature complement(2602106..2602816) /gene="purC" /locus_tag="STM2487" /note="phosphoribosylaminoimidazole-succinocarboxamide synthase; Reviewed; Region: PRK09362" /db_xref="CDD:181800" misc_feature complement(order(2602244..2602249,2602280..2602282, 2602448..2602450,2602559..2602561,2602565..2602567, 2602571..2602573,2602610..2602612,2602739..2602741, 2602745..2602747,2602769..2602774,2602778..2602780, 2602784..2602789,2602793..2602798)) /gene="purC" /locus_tag="STM2487" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:133470" misc_feature complement(order(2602220..2602231,2602244..2602246, 2602280..2602282,2602286..2602294,2602430..2602432, 2602448..2602450,2602454..2602456,2602517..2602525, 2602535..2602537,2602541..2602543,2602547..2602549, 2602559..2602561,2602565..2602576,2602607..2602609, 2602709..2602711,2602745..2602747,2602772..2602774, 2602778..2602789,2602793..2602795)) /gene="purC" /locus_tag="STM2487" /note="active site" /db_xref="CDD:133470" misc_feature complement(order(2602220..2602231,2602286..2602294, 2602430..2602432,2602454..2602456,2602517..2602525, 2602535..2602537,2602541..2602543,2602547..2602549, 2602709..2602711)) /gene="purC" /locus_tag="STM2487" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:133470" regulatory complement(2602825..2602830) /regulatory_class="ribosome_binding_site" /gene="purC" /locus_tag="STM2487" /note="putative RBS for purC; RegulonDB:STMS1H002603" protein_bind complement(2602932..2602946) /gene="purC" /locus_tag="STM2487" /note="putative binding site for PurR, RegulonDB: STMS1H000347" /bound_moiety="PurR" regulatory complement(2602955..2602963) /regulatory_class="minus_10_signal" /gene="purC" /locus_tag="STM2487" /note="putative -10_signal for purC; RegulonDB:STMLTH004548" regulatory complement(2602974..2602982) /regulatory_class="minus_35_signal" /gene="purC" /locus_tag="STM2487" /note="putative -35_signal for purC; RegulonDB:STMLTH004548" gene complement(2602991..2604037) /gene="nlpB" /locus_tag="STM2488" /db_xref="GeneID:1254010" CDS complement(2602991..2604025) /gene="nlpB" /locus_tag="STM2488" /note="similar to E. coli lipoprotein-34 (AAC75530.1); Blastp hit to AAC75530.1 (345 aa), 92% identity in aa 2 - 345" /codon_start=1 /transl_table=11 /product="lipoprotein-34" /protein_id="NP_461423.1" /db_xref="GeneID:1254010" /translation="MAYSVQKSRLAKVAGVSLVLLLAACSSDSRYKRQVSGDESYLDA APLAELHAPAGMILPITTGDYVIPVTKGSGAVGKALDIRPPAQPLALVSGARTQFSGD TATLLVENGRSSTLWPQVVSVIQAKNYPIEKRDDASQTLTTDWVNWNRLDEDEQYRGR YQISVKPQGYQQAVTVKLVNLEQAGKPVADAASLQRYSTEMMNVISAGLDKTATDAAN AAQNRSAATMDVQSAADDTGLPMLVVRGPFNLVWQRLPAALEKVGMKVTDSTRSQGSM AVTYKPLSDSDWRDLGASDPGLASGDYKLQVGDLDNRSSLQFIDPKGHTLTQSQNDAL VAVFQAAFNK" misc_feature complement(2602994..2604025) /gene="nlpB" /locus_tag="STM2488" /note="outer membrane protein assembly factor BamC; Region: PRK11679" /db_xref="CDD:236955" regulatory complement(2604032..2604037) /regulatory_class="ribosome_binding_site" /gene="nlpB" /locus_tag="STM2488" /note="putative RBS for nlpB; RegulonDB:STMS1H002604" gene complement(2604042..2604982) /gene="dapA" /locus_tag="STM2489" /db_xref="GeneID:1254011" CDS complement(2604042..2604920) /gene="dapA" /locus_tag="STM2489" /EC_number="4.3.3.7" /note="similar to E. coli dihydrodipicolinate synthase (AAC75531.1); Blastp hit to AAC75531.1 (292 aa), 91% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="dihydrodipicolinate synthase" /protein_id="NP_461424.1" /db_xref="GeneID:1254011" /translation="MFTGSIVALVTPMDEKGNVSRSCLKKLIDYHVANGTSAIVSVGT TGESATLSHDEHGDVVMMTLELADGRIPVIAGTGANATAEAISLTQRFNDSGIVGCLT VTPYYNRPTQEGLFQHFKAIAEHTDLPQILYNVPSRTGCDMLPETVGRLAEIKNIIAI KEATGNLTRVHQIKELVSDDFILLSGDDASALDFMQLGGHGVISVTANVAAREMADMC KLAAEGQFAEARAINQRLMPLHNKLFVEPNPIPVKWACKALGLVATDTLRLPMTPITD HGRDIVKAALQHAGLL" misc_feature complement(2604054..2604911) /gene="dapA" /locus_tag="STM2489" /note="4-hydroxy-tetrahydrodipicolinate synthase; Region: dapA; TIGR00674" /db_xref="CDD:129757" misc_feature complement(order(2604111..2604113,2604117..2604119, 2604174..2604179,2604507..2604509,2604513..2604515, 2604600..2604608,2604675..2604677,2604681..2604683, 2604780..2604794)) /gene="dapA" /locus_tag="STM2489" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188637" misc_feature complement(order(2604357..2604359,2604363..2604365, 2604438..2604440,2604507..2604509,2604522..2604524, 2604786..2604791)) /gene="dapA" /locus_tag="STM2489" /note="active site" /db_xref="CDD:188637" misc_feature complement(2604438..2604440) /gene="dapA" /locus_tag="STM2489" /note="catalytic residue [active]" /db_xref="CDD:188637" regulatory complement(2604926..2604931) /regulatory_class="ribosome_binding_site" /gene="dapA" /locus_tag="STM2489" /note="putative RBS for dapA; RegulonDB:STMS1H002605" regulatory complement(2604958..2604966) /regulatory_class="minus_10_signal" /gene="dapA" /locus_tag="STM2489" /note="putative -10_signal for dapA; RegulonDB:STMLTH004549" regulatory complement(2604974..2604982) /regulatory_class="minus_35_signal" /gene="dapA" /locus_tag="STM2489" /note="putative -35_signal for dapA; RegulonDB:STMLTH004549" gene 2605000..2605638 /gene="gcvR" /locus_tag="STM2490" /db_xref="GeneID:1254012" CDS 2605000..2605638 /gene="gcvR" /locus_tag="STM2490" /note="similar to E. coli transcriptional regulation of gcv operon (AAC75532.1); Blastp hit to AAC75532.1 (212 aa), 88% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="transcriptional repressor of gcv operon" /protein_id="NP_461425.3" /db_xref="GeneID:1254012" /translation="MLYAGFFYGFLKITSPLKGITGLTPSSQHYLVITALGADRPGIV NTITRHVSSCGCNIEDSRLAMLGDEFTFIMLLSGTWNAITLIESTLPLKGAELDLLIV MKRTSDRPRPAMPATVWVQVEVADSPHLIERFTALFNSHEMNIAELVSRTQPAEGDKA AQLFIQITAHSPASQNSANIEQAFKALCTELNAQGSINVVNYSQHDEQDGVK" misc_feature 2605066..2605635 /gene="gcvR" /locus_tag="STM2490" /note="glycine cleavage system transcriptional repressor; Provisional; Region: gcvR; PRK11589" /db_xref="CDD:236935" gene 2605621..2606108 /gene="bcp" /locus_tag="STM2491" /db_xref="GeneID:1254013" regulatory 2605621..2605626 /regulatory_class="ribosome_binding_site" /gene="bcp" /locus_tag="STM2491" /note="putative RBS for bcp; RegulonDB:STMS1H002606" CDS 2605638..2606108 /gene="bcp" /locus_tag="STM2491" /note="similar to E. coli bacterioferritin comigratory protein (AAC75533.1); Blastp hit to AAC75533.1 (156 aa), 98% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="thioredoxin dependent thiol peroxidase" /protein_id="NP_461426.1" /db_xref="GeneID:1254013" /translation="MNPLKAGDIAPKFSLPDQDGEQVNLTDFQGQRVLVYFYPKAMTP GCTVQACGLRDNMDELKKAGVDVLGISTDKPEKLSRFAEKELLNFTLLSDENHQVCEQ FGVWGEKSFMGKTYDGIHRISFLIDADGKIEHVFNDFKTSNHHDVVLNWLKENA" misc_feature 2605638..2606099 /gene="bcp" /locus_tag="STM2491" /note="thioredoxin-dependent thiol peroxidase; Reviewed; Region: bcp; PRK09437" /db_xref="CDD:181857" misc_feature order(2605764..2605766,2605773..2605775,2605998..2606000) /gene="bcp" /locus_tag="STM2491" /note="catalytic triad [active]" /db_xref="CDD:239315" gene complement(2606155..2606508) /locus_tag="STM2492" /db_xref="GeneID:1254014" CDS complement(2606155..2606508) /locus_tag="STM2492" /note="similar to E. coli orf, hypothetical protein (AAC73616.1); Blastp hit to AAC73616.1 (381 aa), 52% identity in aa 191 - 298" /codon_start=1 /transl_table=11 /product="putative glycerate kinase" /protein_id="NP_461427.1" /db_xref="GeneID:1254014" /translation="MIPLPPISLKACDVNNPLCGPQGASAIFGPQKGATAEMVNTLDE ALENCGRHIYQATGREVINAPGAAGGMGAALLGLLNAELRAGVEIVVETLQLEQAVKD ADLVMTGEGRLARQA" misc_feature complement(<2606161..>2606478) /locus_tag="STM2492" /note="Glycerate kinase family; Region: Gly_kinase; pfam02595" /db_xref="CDD:460609" gene complement(2606695..2607776) /gene="perM" /locus_tag="STM2493" /db_xref="GeneID:1254015" CDS complement(2606695..2607762) /gene="perM" /locus_tag="STM2493" /note="similar to E. coli putative permease (AAC75546.1); Blastp hit to AAC75546.1 (353 aa), 94% identity in aa 1 - 350" /codon_start=1 /transl_table=11 /product="putative PerM family permease" /protein_id="NP_461428.1" /db_xref="GeneID:1254015" /translation="MLEMLMQWYRRRFSDPEAIALLVILVAGFSILFFFSGLLAPLLV AIVLAYLLEWPTARLQAIGCSRRWAASIVLILFVGILLLMAFVVMPIAWQQGIYLIRD MPGMLNKLSDFAATLPRRYPALMDAGIIDAMAENMRTRMLNMGDSVVKYSLASLVGLL TLAVYLVLVPLMVFFLVKDKEQMLNAVRRVLPRNRGLAGQVWNEMNQQITNYIRGKVL EMVVVGVATWLGFLLFGLNYSLLLAVLVGFSVLIPYIGAFVVTIPVVGVALFQFGLGT EFWSCFAVYLIIQALDGNLLVPVLFSEAVNLHPLVIILSVVIFGGLWGFWGVFFAIPL ATLIKAVVHAWPDGQVTDASS" misc_feature complement(2606725..2607708) /gene="perM" /locus_tag="STM2493" /note="AI-2E family transporter; Region: AI-2E_transport; pfam01594" /db_xref="CDD:279875" regulatory complement(2607771..2607776) /regulatory_class="ribosome_binding_site" /gene="perM" /locus_tag="STM2493" /note="putative RBS for perM; RegulonDB:STMS1H002607" gene 2607957..2609433 /locus_tag="STM2494" /db_xref="GeneID:1254016" regulatory 2607957..2607962 /regulatory_class="ribosome_binding_site" /locus_tag="STM2494" /note="putative RBS for STM2494; RegulonDB:STMS1H002608" CDS 2607970..2609433 /locus_tag="STM2494" /note="similar to E. coli orf, hypothetical protein (AAC75547.1); Blastp hit to AAC75547.1 (487 aa), 92% identity in aa 1 - 487" /codon_start=1 /transl_table=11 /product="putative inner membrane or exported" /protein_id="NP_461429.1" /db_xref="GeneID:1254016" /translation="MFRQLKKNLVATLIAALALGQVAPAFADPADTLPDMGTSAGSTL SIGQEMQMGDFYVRQLRGSAPLINDPLLVQYINALGMRLVSHADSVKTPFHFFLINND EINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSAPLT WVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRAGFD PQAMPSFLEKLLDQARYSTRPPEILLTHPLPESRLADARNRANQMRPVVVQSSADFYF AKARALGMYNSGRNQLTSDLLDQWSKGNVRQQHAAQYGRALQAMEASKYDEARKTLQP LLSAEPNNAWYLDLATDIDLGQKRANDAINRLKNARDLRVNPVLQLNLANAYLQGGQP KAAETILNRYTFSHKDDGNGWDLLAQAEAALNNRDQELAARAESYALAGRLDQAISLL SSASAQAKLGSQQQARYDARIDQLRQLQERFKPYTKM" misc_feature 2608111..2608755 /locus_tag="STM2494" /note="Peptidase M48C Ste24p bepA-like, integral membrane protein; Region: M48C_bepA_like; cd07333" /db_xref="CDD:320692" misc_feature order(2608375..2608380,2608387..2608389,2608570..2608572, 2608582..2608584,2608705..2608707) /locus_tag="STM2494" /note="putative active site [active]" /db_xref="CDD:320692" misc_feature order(2608375..2608377,2608387..2608389,2608570..2608572, 2608705..2608707) /locus_tag="STM2494" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:320692" misc_feature 2608888..2609289 /locus_tag="STM2494" /note="Outer membrane protein chaperone/metalloprotease BepA/YfgC, contains M48 and TPR domains [Cell wall/membrane/envelope biogenesis, Posttranslational modification, protein turnover, chaperones]; Region: BepA; COG4783" /db_xref="CDD:443813" gene 2609462..2609832 /gene="yfgD" /locus_tag="STM2495" /db_xref="GeneID:1254017" regulatory 2609462..2609467 /regulatory_class="ribosome_binding_site" /gene="yfgD" /locus_tag="STM2495" /note="putative RBS for yfgD; RegulonDB:STMS1H002609" CDS 2609473..2609832 /gene="yfgD" /locus_tag="STM2495" /note="similar to E. coli putative oxidoreductase (AAC75548.1); Blastp hit to AAC75548.1 (119 aa), 83% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="putative arsenate reductase" /protein_id="NP_461430.1" /db_xref="GeneID:1254017" /translation="MTDTIKIYHNPRCSKSRDTLNLLKSNGVEPEVVLYLDTPADAAT VRELLRMLGMSSARELMRQKEDLYKTLHLADSELSEEALIQALVEHPKLMERPIVVAN GQARIGRPPEQVLDILG" misc_feature 2609485..2609823 /gene="yfgD" /locus_tag="STM2495" /note="Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the...; Region: ArsC_ArsC; cd03034" /db_xref="CDD:239332" misc_feature order(2609509..2609511,2609656..2609658,2609758..2609760, 2609797..2609799) /gene="yfgD" /locus_tag="STM2495" /note="catalytic residues [active]" /db_xref="CDD:239332" gene complement(2609859..2610584) /gene="yfgE" /locus_tag="STM2496" /db_xref="GeneID:1254018" CDS complement(2609859..2610584) /gene="yfgE" /locus_tag="STM2496" /note="similar to E. coli putative DNA replication factor (AAC75549.1); Blastp hit to AAC75549.1 (248 aa), 98% identity in aa 12 - 248" /codon_start=1 /transl_table=11 /product="putative ATPase involved in DNA replication initiation" /protein_id="NP_461431.1" /db_xref="GeneID:1254018" /translation="MSSWVEVSLNTPAQLSLPLYLPDDETFASFWPGDNASLLAALQN VLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGME HLSLVCIDNIECVAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLAS RLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQ LDHASITAQRKLTIPFVKEILKL" misc_feature complement(2609862..2610566) /gene="yfgE" /locus_tag="STM2496" /note="DnaA inactivator Hda; Region: PRK08084" /db_xref="CDD:181224" gene complement(2610655..2611956) /gene="uraA" /locus_tag="STM2497" /db_xref="GeneID:1254019" CDS complement(2610655..2611944) /gene="uraA" /locus_tag="STM2497" /note="similar to E. coli uracil transport (AAC75550.1); Blastp hit to AAC75550.1 (429 aa), 94% identity in aa 1 - 425" /codon_start=1 /transl_table=11 /product="NCS2 family uracil transport protein" /protein_id="NP_461432.1" /db_xref="GeneID:1254019" /translation="MTRRAIGVSERPPLLQTIPLSLQHLFAMFGATVLVPVLFHINPA TVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLLPLGYEVALGGFIMCGVLFC LVSFIVKKAGTGWLDVMFPPAAMGAIVAVIGLELAGVAAGMAGLLPAQGQSPDTKTII ISMVTLAVTVFGSVLFRGFLAIIPILIGVLAGYALSFALGVVDTTPIAQAHWFALPTF YTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLVRDPGLHRSMFANGLSTII SGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQIIPLPVM GGVSLLLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKVHIGAAELKGM ALATIVGICLSLIFKLISLLRPEEVVLEANDAEPPHQ" misc_feature complement(2610658..2611941) /gene="uraA" /locus_tag="STM2497" /note="uracil transporter; Provisional; Region: PRK10720" /db_xref="CDD:236744" regulatory complement(2611951..2611956) /regulatory_class="ribosome_binding_site" /gene="uraA" /locus_tag="STM2497" /note="putative RBS for uraA; RegulonDB:STMS1H002610" gene complement(2612032..2612819) /gene="upp" /locus_tag="STM2498" /db_xref="GeneID:1254020" CDS complement(2612032..2612658) /gene="upp" /locus_tag="STM2498" /EC_number="2.4.2.9" /note="similar to E. coli uracil phosphoribosyltransferase (AAC75551.1); Blastp hit to AAC75551.1 (217 aa), 99% identity in aa 10 - 217" /codon_start=1 /transl_table=11 /product="uracil phosphoribosyltransferase" /protein_id="NP_461433.1" /db_xref="GeneID:1254020" /translation="MKIVEVKHPLVKHKLGLMRENDISTKRFRELASEVGSLLTYEAT ADLETEKVTIEGWNGPVEIDQIKGKKITVVPILRAGLGMMEGVLENVPSARISVVGMY RNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGCSSIKVLVLV AAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK" misc_feature complement(2612035..2612658) /gene="upp" /locus_tag="STM2498" /note="uracil phosphoribosyltransferase; Reviewed; Region: upp; PRK00129" /db_xref="CDD:234653" misc_feature complement(order(2612173..2612175,2612245..2612259, 2612263..2612271,2612422..2612424,2612428..2612430)) /gene="upp" /locus_tag="STM2498" /note="active site" /db_xref="CDD:206754" regulatory complement(2612670..2612675) /regulatory_class="ribosome_binding_site" /gene="upp" /locus_tag="STM2498" /note="putative RBS for upp; RegulonDB:STMS1H002611" regulatory complement(2612795..2612803) /regulatory_class="minus_10_signal" /gene="upp" /locus_tag="STM2498" /note="putative -10_signal for upp; RegulonDB:STMLTH004550" regulatory complement(2612811..2612819) /regulatory_class="minus_35_signal" /gene="upp" /locus_tag="STM2498" /note="putative -35_signal for upp; RegulonDB:STMLTH004550" protein_bind 2612995..2613011 /note="putative binding site for PurR, RegulonDB: STMS1H000353" /bound_moiety="PurR" gene 2613008..2614109 /gene="purM" /locus_tag="STM2499" /db_xref="GeneID:1254021" regulatory 2613008..2613016 /regulatory_class="minus_35_signal" /gene="purM" /locus_tag="STM2499" /note="putative -35_signal for purM; RegulonDB:STMLTH004551" regulatory 2613032..2613040 /regulatory_class="minus_10_signal" /gene="purM" /locus_tag="STM2499" /note="putative -10_signal for purM; RegulonDB:STMLTH004551" regulatory 2613066..2613071 /regulatory_class="ribosome_binding_site" /gene="purM" /locus_tag="STM2499" /note="putative RBS for purM; RegulonDB:STMS1H002612" CDS 2613072..2614109 /gene="purM" /locus_tag="STM2499" /EC_number="6.3.3.1" /note="AIR synthetase; similar to E. coli phosphoribosylaminoimidazole synthetase = AIR synthetase (AAC75552.1); Blastp hit to AAC75552.1 (345 aa), 91% identity in aa 1 - 345" /codon_start=1 /transl_table=11 /product="phosphoribosylaminoimidazole synthetase" /protein_id="NP_461434.3" /db_xref="GeneID:1254021" /translation="MTDKTSLSYKDAGVDIDAGNALVDRIKGVVKKTRRPEVMGGLGG FGALCALPQKYREPVLVSGTDGVGTKLRLAMDLKRHDAIGIDLVAMCVNDLVVQGAEP LFFLDYYATGKLDVDTAASVINGIAEGCLQSGCALVGGETAEMPGMYHGEDYDVAGFC VGVVEKSEIIDGSRVAEGDVLIALGSSGPHSNGYSLVRKIIDVSGCDPQTTLLEGKPL ADHLLEPTRIYVKSVLELIENVDVHAIAHLTGGGFWENIPRVLPENTQAVINESSWQW PAIFTWLQTAGNVSRHEMYRTFNCGVGMVIALSAPEADKALALLNEKGENAWKIGIIK ASDSEQRVVIE" misc_feature 2613078..2614103 /gene="purM" /locus_tag="STM2499" /note="Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]; Region: PurM; COG0150" /db_xref="CDD:439920" gene 2614095..2614747 /gene="purN" /locus_tag="STM2500" /db_xref="GeneID:1254022" regulatory 2614095..2614100 /regulatory_class="ribosome_binding_site" /gene="purN" /locus_tag="STM2500" /note="putative RBS for purN; RegulonDB:STMS1H002613" CDS 2614109..2614747 /gene="purN" /locus_tag="STM2500" /EC_number="2.1.2.2" /note="component of RNA degradosome; similar to E. coli phosphoribosylglycinamide formyltransferase 1 (AAC75553.1); Blastp hit to AAC75553.1 (212 aa), 87% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="polyphosphate kinase" /protein_id="NP_461435.1" /db_xref="GeneID:1254022" /translation="MNIVVLISGNGSNLQAIIDACEAKKIKGTLRAVFSNKADAFGLE RAREAGIPAQALTADRFDSRDAFDRELIRKIDAYAPDVVVLAGFMRILSPMFVAHYYG RLLNIHPSLLPKYPGLHTHRQALENGDEEHGTSVHFVTDELDGGPVILQAKVPVFAND SEDDITARVQTQEHAIYPLVISWFAQGRLKMRDNAAWLDGRRLPPQGYASDE" misc_feature 2614109..2614711 /gene="purN" /locus_tag="STM2500" /note="Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]; Region: PurN; COG0299" /db_xref="CDD:440068" gene 2614919..2617002 /gene="ppk" /locus_tag="STM2501" /db_xref="GeneID:1254023" regulatory 2614919..2614924 /regulatory_class="ribosome_binding_site" /gene="ppk" /locus_tag="STM2501" /note="putative RBS for ppk; RegulonDB:STMS1H002614" CDS 2614936..2617002 /gene="ppk" /locus_tag="STM2501" /EC_number="2.7.4.1" /note="component of RNA degradosome; similar to E. coli polyphosphate kinase (AAC75554.1); Blastp hit to AAC75554.1 (688 aa), 96% identity in aa 1 - 688" /codon_start=1 /transl_table=11 /product="polyphosphate kinase" /protein_id="NP_461436.1" /db_xref="GeneID:1254023" /translation="MGQEKLYIEKELSWLAFNERVLQEAADKSNPLIERMRFLGIYSN NLDEFYKVRFAELKRRIIISEEQGSNSHSRHLLGKIQSRVLKADQEFDGLYNELLLEM ARNQIFLINERQLSVNQQSWLRHYFKHYLRQHITPILINRETDLVQFLKDDYTYLAVE IIRGDTINYALLEIPSDKVPRFVNLPPETPRRRKPMILLDNILRYCLDDIFKGFFDYD ALNAYSMKMTRDAEYDLVHEMESSLMELMSSSLKQRLTAEPVRFVYQRDMPAALVDVL REKLTISRYDSIVPGGRYHNFKDFINFPNVGKANLVNKPLPRLRHLWFDKEKFRNGFD AIRERDVLLYYPYHTFEHVLELLRQASFDPSVLAIKINIYRVAKDSRIIDSMIHAAHN GKKVTVVVELQARFDEEANIHWAKRLTEAGVHVIFSAPGLKIHAKLFLISRKEGDDVV RYAHIGTGNFNEKTARLYTDYSLLTADARITNEVRRVFNFIENPYRPVTFDYLMVSPQ NSRRLLYEMIDREIANAQQGLPSGITLKLNNLVDKGLVDRLYAASGSGVQVNLLVRGM CSLIPQLEGISDNIRAISIVDRYLEHDRVYIFENGGDKQVWLSSADWMTRNIDYRIEV ATPILDPRLKQRVLDIIDILFSDTVKARFIDKELSNRYVPRGNRRKVQAQLAIYDYIK SLEQPD" misc_feature 2614954..2616975 /gene="ppk" /locus_tag="STM2501" /note="polyphosphate kinase 1; Region: poly_P_kin; TIGR03705" /db_xref="CDD:274734" gene 2617007..2618548 /gene="ppx" /locus_tag="STM2502" /db_xref="GeneID:1254024" CDS 2617007..2618548 /gene="ppx" /locus_tag="STM2502" /EC_number="3.6.1.11" /note="similar to E. coli exopolyphosphatase (AAC75555.1); Blastp hit to AAC75555.1 (513 aa), 92% identity in aa 1 - 513" /codon_start=1 /transl_table=11 /product="exopolyphosphatase" /protein_id="NP_461437.1" /db_xref="GeneID:1254024" /translation="MPIYDKSPRPQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQR VHLADGLGADNKLSEEAMERGLSCLSLFAERLQGFSPSSVCIVGTHTLRQAQNAADFL KRAEKVIPYPIEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEPR LVESRRMGCVSFAQLYFPGGVINKENFQRARMAAAQKLETLTWQYRIQGWNVAMGASG TIKAAHEVLLALGEKDGFITPERLDKLKSEVLKHRSFNALSLPGLSEERKAVFVPGLA ILCGVFDALAIRELRLSDGALREGVLYEMEGRFRHQDVRSRTAKSLANQYNIDREQAR RVLETTMQMYEQWQAQQPKLAHPQLEALLRWAAMLHEVGLNINHSGLHRHSAYILQHS DLPGFNQEQQMMMATLVRYHRKAIKLDDMPRFTLFKKKQYLPLIQLLRLGVLLNNQRQ ATTTPPTLRLTTDDSHWTLCFPHDWFSQNALVLLDLEKEQQYWEAVTGWRLNIEEESS PEIAA" misc_feature 2617007..2618545 /gene="ppx" /locus_tag="STM2502" /note="exopolyphosphatase; Provisional; Region: PRK10854" /db_xref="CDD:182781" gene complement(2618584..2620797) /locus_tag="STM2503" /db_xref="GeneID:1254025" CDS complement(2618584..2620797) /locus_tag="STM2503" /note="similar to E. coli putative cytochrome C-type biogenesis protein (AAC75556.1); Blastp hit to AAC75556.1 (747 aa), 73% identity in aa 1 - 733" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase" /protein_id="NP_461438.1" /db_xref="GeneID:1254025" /translation="MKLNKTYINIRDKWWGLPLILPSILLPVLSSANTYALTSTGNVV LFYLPLAFMLSLMLFFGWAALPGIVLAIFWRRYPQTGLYETLSVTMHFIITIVLSWGG YRVFSPRRNNVSHGDAHLLFQRIFWQVFCSATLFLVIYQFAAFVGMYESKASLMGVMP FNINTLINYQALLVGNLVGVPLCYFIIRTLRNPLHLRGYYQQLKLQIDSKATKKEIVI WLAVLTTLMFILCMPLTDNSSIFSTNYTLSLLLPVMLWGAMRYGYKFISIIWAVVLIT SIHYYQRYMPWYSGYDTQLAITSSSYLVFSFIVNYMSVLATRQRVVSGRARRLAYLDP VVHLPNLRALNRALQNAPWSTICFLHVPGLELLGKNYGVMLRIQYKQKLSHWITPMLA SNECVYQMSGHDLVLRLNTEAHQQRIEALDKHIKQFRFIWDGLPLQPPVGVSYCCVRS PVSHLYLLLGELSTSSDLSLTTNAPEDLQRRGAMHLQRDLKGRIAMMNRLQQALEHDH FFLMAQPIFGVRGDVYHEILLRLRDDNGDVINPDNFLPVAHEFGLSSAIDLWVIENTL RFMAASREYMPAHRFAINLSPTSVCRARFPAEVKQLLTQYQVEPWQLVFEVTESNSLT NAEQAQLTLGQLQQFGCQIAIDDFGTGYASYARLKNVDADILKIDGSFIRNIVSNSLD YQIVASICHLARMKNMQVVAEYVESEEIRSVVLSLGIDYLQGYLIGEPQLLSEIQ" misc_feature complement(2619838..2620716) /locus_tag="STM2503" /note="Region: MASE1; pfam05231" /db_xref="CDD:428383" misc_feature complement(2618587..2620152) /locus_tag="STM2503" /note="EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) [Signal transduction mechanisms]; Region: EAL; COG2200" /db_xref="CDD:441802" misc_feature complement(2618599..2619309) /locus_tag="STM2503" /note="Putative diguanylate phosphodiesterase; Region: EAL; smart00052" /db_xref="CDD:214491" gene complement(2620894..2621031) /locus_tag="STM2504" /db_xref="GeneID:1254026" CDS complement(2620894..2621031) /locus_tag="STM2504" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_448898.1" /db_xref="GeneID:1254026" /translation="MEDNFSIYINNKLMITKNKKANKGCRRKVIIDLNQMLLLFNNYN R" gene complement(2621102..2621367) /locus_tag="STM2505" /db_xref="GeneID:1254027" CDS complement(2621102..2621362) /locus_tag="STM2505" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461440.1" /db_xref="GeneID:1254027" /translation="MRFFFILMVLPGADRRVDETSKEEEKTDKQYDTGHASVKSMSFS HTVGLTHKGFLNVGPAIWAGSGWVLQGYYQGEERNKPAFTLH" gene 2621198..2621401 /locus_tag="STM2506" /db_xref="GeneID:1254028" regulatory 2621198..2621203 /regulatory_class="ribosome_binding_site" /locus_tag="STM2506" /note="putative RBS for STM2506; RegulonDB:STMS1H002616" CDS 2621210..2621401 /locus_tag="STM2506" /note="similar to E. coli orf, hypothetical protein (AAC75557.1); Blastp hit to AAC75557.1 (63 aa), 82% identity in aa 1 - 63" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461441.1" /db_xref="GeneID:1254028" /translation="MSQANSMRKRHRFNTRMTRIVLLISFLFFFGRFVYSSIGAWQHH QDKKEAQQSSLSVTTPGQR" misc_feature 2621228..2621356 /locus_tag="STM2506" /note="Protein of unknown function (DUF2633); Region: DUF2633; pfam11119" /db_xref="CDD:463225" regulatory complement(2621362..2621367) /regulatory_class="ribosome_binding_site" /locus_tag="STM2505" /note="putative RBS for STM2505; RegulonDB:STMS1H002615" gene complement(2621480..2621716) /locus_tag="STM2507" /db_xref="GeneID:1254029" CDS complement(2621480..2621716) /locus_tag="STM2507" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_448901.1" /db_xref="GeneID:1254029" /translation="MYLEAINVTGVVPRGLPLVGRTGCPELLKIGCASYREFNHAEGY RVLYSVEGILVTAHVILSPRQDIPRLLFKRLIMA" gene 2621942..2622271 /locus_tag="STM2508" /db_xref="GeneID:1254030" CDS 2621942..2622271 /locus_tag="STM2508" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461443.1" /db_xref="GeneID:1254030" /translation="MDVLLMRDIEKEIIDFIDQEYNTKKYFLCGPKRIITLDTSIRDD LKLVFEDSEELLQKYFKRWNVDSEGFDILNYLNPEYFGSKEPDPRKPLTVGMLVESAK AGRWLYS" misc_feature 2621957..2622265 /locus_tag="STM2508" /note="Protein of unknown function (DUF1493); Region: DUF1493; pfam07377" /db_xref="CDD:399982" gene complement(2622291..2622652) /locus_tag="STM2509" /db_xref="GeneID:1254031" CDS complement(2622291..2622647) /locus_tag="STM2509" /note="similar to E. coli IS3 putative transposase (AAC75150.1); Blastp hit to AAC75150.1 (288 aa), 54% identity in aa 146 - 242" /codon_start=1 /transl_table=11 /product="putative IS3-like transposase" /protein_id="NP_461444.1" /db_xref="GeneID:1254031" /translation="MYLAVVVDLFSCKVIGWSMQPRMTKDIVLNALLMAVWRRHPQKQ VLVQSDQGSQYTRYEWLKLHGLEGSMSRCGNCHDNAVAESFFQLLKRERIKKKIYQRL RSVQVIRGDSAQIRGI" misc_feature complement(2622330..>2622644) /locus_tag="STM2509" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" regulatory complement(2622647..2622652) /regulatory_class="ribosome_binding_site" /locus_tag="STM2509" /note="putative RBS for STM2509; RegulonDB:STMS1H002617" gene complement(2622804..2624396) /gene="guaA" /locus_tag="STM2510" /db_xref="GeneID:1254032" CDS complement(2622804..2624381) /gene="guaA" /locus_tag="STM2510" /EC_number="6.3.5.2" /note="similar to E. coli GMP synthetase (glutamine-hydrolyzing) (AAC75560.1); Blastp hit to AAC75560.1 (525 aa), 98% identity in aa 1 - 525" /codon_start=1 /transl_table=11 /product="GMP synthetase" /protein_id="NP_461445.1" /db_xref="GeneID:1254032" /translation="MTENIHKHRILILDFGSQYTQLVARRVRELGVYCELWAWDVTEA QIRDFNPSGIILSGGPESTTEENSPRALQYVFEAGVPVFGVCYGMQTMAMQLGGHVEG SNEREFGYAQVEVLTDSALVRGIEDSLTADGKPLLDVWMSHGDKVTAIPSDFVTVAST ESCPFAIMANEEKRFYGVQFHPEVTHTRQGMRMLERFVRDICQCEALWTPAKIIDDAV ARIREQVGDDKVILGLSGGVDSSVTAMLLHRAIGKNLTCVFVDNGLLRLNEAEQVMDM FGDHFGLNIVHVPAEERFLSALAGENDPEAKRKIIGRVFVEVFDEEALKLEDVKWLAQ GTIYPDVIESAASATGKAHVIKSHHNVGGLPKEMKMGLVEPLKELFKDEVRKIGLELG LPYDMLYRHPFPGPGLGVRVLGEVKKEYCDLLRRADAIFIEELRKADLYDKVSQAFTV FLPVRSVGVMGDGRKYDWVVSLRAVETIDFMTAHWAHLPYDFLGRVSNRIINEVNGIS RVVYDISGKPPATIEWE" misc_feature complement(2622807..2624369) /gene="guaA" /locus_tag="STM2510" /note="GMP synthase; Reviewed; Region: guaA; PRK00074" /db_xref="CDD:234614" regulatory complement(2624391..2624396) /regulatory_class="ribosome_binding_site" /gene="guaA" /locus_tag="STM2510" /note="putative RBS for guaA; RegulonDB:STMS1H002618" gene complement(2624451..2626003) /gene="guaB" /locus_tag="STM2511" /db_xref="GeneID:1254033" CDS complement(2624451..2625917) /gene="guaB" /locus_tag="STM2511" /EC_number="1.1.1.205" /note="similar to E. coli IMP dehydrogenase (AAC75561.1); Blastp hit to AAC75561.1 (488 aa), 98% identity in aa 1 - 488" /codon_start=1 /transl_table=11 /product="IMP dehydrogenase" /protein_id="NP_461446.1" /db_xref="GeneID:1254033" /translation="MLRIAKEALTFDDVLLVPAHSTVLPNTADLSTQLTKTIRLNIPM LSAAMDTVTEARLAIALAQEGGIGFIHKNMSIERQAEEVRRVKKHESGVVTDPQTVLP TTTLHEVKALTERNGFAGYPVVTEDNELVGIITGRDVRFVTDLNQPVSVYMTPKERLV TVREGEAREVVLAKMHEKRVEKALVVDDNFHLLGMITVKDFQKAERKPNSCKDEQGRL RVGAAVGAGAGNEERVDALVAAGVDVLLIDSSHGHSEGVLQRIRETRAKYPDLQIIGG NVATGAGARALAEAGCSAVKVGIGPGSICTTRIVTGVGVPQITAVSDAVEALEGTGIP VIADGGIRFSGDIAKAIAAGASAVMVGSMLAGTEESPGEIELYQGRSYKSYRGMGSLG AMSKGSSDRYFQSDNAADKLVPEGIEGRVAYKGRLKEIIHQQMGGLRSCMGLTGCATI DELRTKAEFVRISGAGIQESHVHDVTITKESPNYRLGS" misc_feature complement(2624499..2625896) /gene="guaB" /locus_tag="STM2511" /note="IMP dehydrogenase / GMP reductase domain; Region: IMPDH; pfam00478" /db_xref="CDD:459826" regulatory complement(2625929..2625934) /regulatory_class="ribosome_binding_site" /gene="guaB" /locus_tag="STM2511" /note="putative RBS for guaB; RegulonDB:STMS1H002619" regulatory complement(2625976..2625984) /regulatory_class="minus_10_signal" /gene="guaB" /locus_tag="STM2511" /note="putative -10_signal for guaB; RegulonDB:STMLTH004552" regulatory complement(2625995..2626003) /regulatory_class="minus_35_signal" /gene="guaB" /locus_tag="STM2511" /note="putative -35_signal for guaB; RegulonDB:STMLTH004552" gene 2626078..2627427 /gene="xseA" /locus_tag="STM2512" /db_xref="GeneID:1254034" CDS 2626078..2627427 /gene="xseA" /locus_tag="STM2512" /EC_number="3.1.11.6" /note="similar to E. coli exonuclease VII, large subunit (AAC75562.1); Blastp hit to AAC75562.1 (456 aa), 87% identity in aa 1 - 447" /codon_start=1 /transl_table=11 /product="exonuclease VII, large subunit" /protein_id="NP_461447.1" /db_xref="GeneID:1254034" /translation="MLSSQTSSIFTVSRLNQTVRLLLEQEMGQVWISGEISNFTQPAS GHWYFTLKDDTAQVRCAMFRNSNRRVTFRPQHGQQVLVRANITLYEPRGDYQIIAESM QPAGEGLLQQKYEQLKAKLQAEGLFDQQHKQPLPSPAHCVGVITSKTGAALHDILHVL KRRDPSLPVIIYPTAVQGDDAPGQIVRAIELANARGECDVLIVGRGGGSLEDLWSFND ERVARAIFASRIPVVSAVGHETDVTIADFVADLRAPTPSAAAEIVSRNQQELLRQIQS AQQRLGMAMDYYLANRSRRFTQIFHRLQQQHPQLRLARQQTALERLRQRMGFALEARI KQANQRQQCVSQRLSQQNPQPRIHRAQSRIQQLEYRLTENIRSRLSEQRERFGNAVTH LEAVSPLATLARGYTVSTTTDGKVLKKIKQVKAGDIMTTRLEDGWLESEVKSVTPGT" misc_feature 2626090..2627421 /gene="xseA" /locus_tag="STM2512" /note="Exonuclease VII, large subunit [Replication, recombination and repair]; Region: XseA; COG1570" /db_xref="CDD:441178" protein_bind complement(2626174..2626181) /note="putative binding site for PurR, RegulonDB: STMS1H000354" /bound_moiety="PurR" gene complement(2627589..2633715) /gene="shdA" /locus_tag="STM2513" /db_xref="GeneID:1254035" CDS complement(2627589..2633708) /gene="shdA" /locus_tag="STM2513" /note="IcsA; subspecies I specific; Peyer's patch colonization and shedding factor; ShdA (gi|5107805)" /codon_start=1 /transl_table=11 /product="C-terminal region of AIDA-like protein" /protein_id="NP_461448.1" /db_xref="GeneID:1254035" /translation="MRNMYVVASELARGHSKVKAQVCASETHSPNQKSEYGQIIKATR AALACAVAAALGFFSPLAMADNQVSYADAQPHVLDASTPPISYSGTDEGAALYVSGVA TVGWQPTTVTGTGLVIETSGGGADDPDGGKYVSNAISLDHYAILELTDAKITTTGIYT QGISAADGSTLRLTDSTLTIDGNFGVMTLYTGSEATLDGTIVEAANSSSAQVQQGSTL NVLDGSTITLAQGQINVVAGNTATDEGSTLNLSDSSVSSAGTMSTIQGTNKAALNLTN ATITHTNASGAAVQANNATTLDITGGNITSAGTGVYILASDARIDGATINADGDGIFI TSKRKLDGYEDLNALTVSDANVTSKTVALNIDGSTTINDPIELTNSTFTAPTAIKLGS KATIQAEKTMLTGNIVQTDASSSSLSLSQGSTLTGSVDAMFTTLSLDDTSQWNMTDPS TVGNLTNDGDITLGNASGSTGTLLTVDNTLTLQDGSQINATLDTANSAPIIKAANVTL DGTLNLSSTATFVAPETDEHFGSITLIDSQTAITTDFDSVTLDADTSAMPDYLTINAG VDANDNTNYELSTGLSWYAGANSARAAHGTFTVDAGSTFTVTSELDETTATSNWNGSK LTKQGDGTLILSNTGNDYGDTEIDGGILAAKDAAALGTGDVTIAESATLALSQGTLDN NVTGEGQIVKSGSDELIVTGDNNYSGGTTISGGTLTADHADSLGSGDIDNSGVLKVGE GELENILSGSGSLVKTGTGELTLSGDNTYSGGTTITGGTLTADHADSLGSGDIDNSGV LKVGEGDLENTLSGSGSLVKTGTGELTLSGGNDYSGGTTIIGGTLTADHADSLGTGAV ANSGVLQVGEGELENTLSGSGSLVKTGTGELTLSGDNSYSGGTTIIGGTLTADHADSL GTGAVANSGVLQVGEGELENTLSGSGSLVKTGTGELTLSGDNSYSGGTTIIGGTLTAD HADSLGTGAVANSGVLQVGEGELENTLSGSGSLVKTGTGELTLGGDNSYSGATTITDG TLIAANVNALGSGNIDNSGTLILDANGAFELANVTTHSGATTALAAGSTLDAGQFTQE DGSTLSIDLGAATDDAVITADSVALGGTLNVTGIGSVTDSWTPEAYTYTLIGSDSAIT TDFDDLTVAGMNREDVDFLTIDGKVDEADNTHYDLTASLSWYADRDNATTDAHGTFTL SDPDGSFNVAATLTDVDDTLDPGSRWDGKSLTKEGAGTLILSGDNDYSGGTTINEGTL VAASTTALGTGLVDNNATLVLDADGEVSAVGGITTHSGATTQLALGTSLDLGDSALIQ QDGSTLNVELNSDSVQPLITGSSATLGGDLVVSDASLQARASDAEFQSFKLMDMTSDI SGDFTSLTMNLTDKPDYLTVTGTINPEDASEYLLTEGLSWNATATSATPAHGTFTLGA GDSFEVTSVLGDKTGNGDWDGKSLTKLGAGKLTLSGANTYSGDTNVQEGTLWLSGDGS IGEMGSQQAVNVASGATFGGSNGTTVNGKVTNEGTLVFGNSEETGAIFTLNGDLINMG TMTSGSSSSTPGNTLYVDGNYTGNGGSLYLNTVLGDDDSATDKLVITGDASGTTDLYI NGIGDGAQTTNGIEVVDVGGVSTSDAFELKNEVNAGLYTYRLYWNESDNDWYLASKAQ SDDDDSGGDDTPSDGGDDGGNVTPPDDGGDGGNVTPPDDGGDGGDVTPPDHGGDVAPQ YRADIGAYMGNQWMARNLQMQTLYDREGSQYRNADGSVWARFKAGKAESEAVSGNIDM DSNYSQFQLGGDILAWGNGQQSVTVGVMASYINADTDSTGNRGADGSQFTSSGNVDGY NLGVYATWFADAQTHSGAYVDSWYQYGFYNNSVESGDAGSESYDSTANAVSLETGYRY DIALSNGNTVSLTPQAQVVWQNYSADSVKDNYGTRIDGQDGDSWTTRLGLRVDGKLYK GSRTVIQPFAEANWLHTSDDVSVSFDDATVKQDLPANRAELKVGLQADIDKQWSVRAQ VAGQTGSNDFGDLNGSLNLRYNW" misc_feature complement(2627592..2633708) /gene="shdA" /locus_tag="STM2513" /note="fibronectin-binding autotransporter adhesin ShdA; Region: PRK15319" /db_xref="CDD:185219" regulatory complement(2633710..2633715) /regulatory_class="ribosome_binding_site" /gene="shdA" /locus_tag="STM2513" /note="putative RBS for shdA; RegulonDB:STMS1H002620" gene complement(2634402..2641716) /gene="ratB" /locus_tag="STM2514" /db_xref="GeneID:1254036" CDS complement(2634402..2641709) /gene="ratB" /locus_tag="STM2514" /note="RatB (gi|5107806)" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_461449.1" /db_xref="GeneID:1254036" /translation="MKSKKCVGFLPWLLLCALSLTPFFAQAVRSSGAWQELTEQTAAI NGTPPQADSVTIPVYQGSVQLRSDAANPVDYSAKPSQFSTSDVGSALTLTNPHDTEGD IFAVPPLAWQAERAPAVTLVWADAATPDTPLDPQPVSNISFCAQNLAGRHLVVWSQLD TSTAIPPLWLLTRTGVPYNTAVEVLDQKFAVDIAPAVGDPVTLAADHLDESLNAAKVK AGESIMLTVTTKDCGGEPEGNVDFVITRGDAQNRQGVVNNAAPVRVGNTELTTTATEY HGTTNAEGVATVVVTQANGPGVKTPLIAHPSSAPALKASVDVIFTTLTSPDSSSANMY GHMAETSTATVDGASYTFYRPKLAAETDSEDRTASINNETWAQFNWGHADAHCDILPD ARQLEGLKIARGDLATTLGWPVGLTSGDEEYWSSSQGSTATDHISIDMRSRALTQMPD ATQSLVSCVDKAPPAVTPKLVISADNFDSTVNAAKVKVGEEINMKITVTDSATNKPLP YRYFNVYLGDEQNRQNQKNADIDSGHQWTDDPVIITNLEGSDGHYHGVTDANGQFSLV LTQDKGAGVLTPVRVVLFDGTEATQNVIFTVVTSPDVAQARMWGHMQGVVEAGNIYKR PLLADEAAQDTGSEFENNEYWATFNSVTAATNQCGTGQVPGQLLLDTLYQAHSGNAME TTYGWPTQKHSYIAADTDGSTTAHVNLATGADSTFSGTEPNYLSCSGNELVTSLDVYF NGDESLRNAVAKVGEQITMNVHSVNALNGLSVPNASFTVTMSHGKNRDNATTGFTDPS DGTLVMGGTPFGSSQASMTYQGMTDAEGNATLVIEQPQGVGLLTPLSVLPVNSLITTP VNRSVKFTVATSPDTPEAQMWGHMADTLTVGDMKFQRPKLAAEATAATRTQEQDNETW ARVSHADALNNPNAGGCEAGHLPRADQLAALYASSDGNKIHTVSGWPTEYDYWSSTFA SAATWQAVSLAAGGYTASGDASDYVSCLVSKNPTAASITIEPVDAALWYNANSEHAVK VKKGDTLQLKVTVKDASGNPLPQAPFVLSRGDGYTRQGEKHIAGSGDGIVSAVVIDGD SLNDTATKIGGMTGENGSKIINVTRPDTHGTKVAITAALYDNASATASIDTIFTVVTS PDSDKAKMWGHMPETTTAANGEVFKRPLLSAEIASGVTHGDNTENNEAWGIVDFEMAN DACGAGYVPTLADMQSLYDARPGGAMNTQQGWPLDGKNYQDSTADLSRSTQNRYVKSI NLRDGGVGSLLWNEQLYFVCLQNAHPAATQITLTSPVYNDSDGFAKAKVGETIPVIIT TRDAQGNPAADTPVIFTRGDSVGRANQEVNSSAAADIQINHSDGRSSGANYYTATGAD GTLTLNISQDSGAGFKTPLTAAIEHNGVTSAPLPVIFTVVTSPDTPKANYWGHMAETL TDSSGVAYRRPLLASEFSATPGKTLTIANGYYDKGETWGMITVDKAWNGTGGGCGRDT LPTVANLQTLYGTYPDNAMRSRNGWPMTSSGNNNVSRYWWAGDYVISSDGTKSLYAAV NLFNDGNDVKTTTSTSMYYMQTCLASPRSAAASLTLTLAGQDETTGSAKAKKGEQMAA TIDVKDAAGQPMKNVMVKISRGSSYNRANSATSSSSITDDITLRNVMPSGLATYLLDT SAKYLYAQTDAQGQVTFTLAQDSTAGLKTTISAATMDGSNLTDSKDAIFTVVTSPDSD KAKYWGHMPETFTNSKGVEFKRPLLRAELSSTADTSGYTENNETWYTWSRYPNMYQDT ASPCDRLGLPTVNDLQTLYTDYPNGALTTTLGLPVASGKYWGAGNSVPDATHSDSQFQ YVRLSDNNTLTTKANTATAQLCLAKRRDLSIELTSSDMDADKGAPVAKKGESLPLTVT VRDGSGTPQPNTAIRLGRTLSIDRAGVVDGSSGGGMVLTSVAPSTGSMTFNCTVSSCT SYWYGITDEDGKAQLEVTQDDSRGLRTPLQAMLVDDPLTVSDMDVIFTVITSPDSDKA KYWGHMPETVTNSAGVKFRRPLLAAEMTSNSGTYLVNNETWPLVTAANTEKAGATGCD AEYQPLSGDLQTLYSDNPNGAIGTNYGWPVAGNKSWWAADRAPNTGYYQFINLNSGGK GTASSSTATGAQVCLVEPRTSTPASITLTSTAMDSAKNAAVVAKGSAMPLTVTVKDSS GNPVANVGFTLSRGDSKNRAGMVITDGDVAADAGADDLMLKELTPASASQSMTTTGIV FTGTTGSDGTATFTLNQDKSLGLKTPLTVKVTDNTTLHASLDVIFMVLTSPDTDKALF WGNMSDTTSVNGKTLHRPWLQAEMLSGVTPVFTNGVHANNEYWAMAHTVDNTKWDIAK QCGSLSKAPDNNDLLTLYHSISSLGWPTQGYPYLSKSTSSGGMYCGVDENTKSQNCAI KPAGSAGYATCVE" misc_feature complement(2634405..2641709) /gene="ratB" /locus_tag="STM2514" /note="outer membrane protein RatB; Provisional; Region: PRK15314" /db_xref="CDD:185214" regulatory complement(2641711..2641716) /regulatory_class="ribosome_binding_site" /gene="ratB" /locus_tag="STM2514" /note="putative RBS for ratB; RegulonDB:STMS1H002621" gene complement(2641875..2647476) /gene="ratA" /locus_tag="STM2515" /db_xref="GeneID:1254037" CDS complement(2641875..2647472) /gene="ratA" /locus_tag="STM2515" /note="RatA (gi|4583529)" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_461450.1" /db_xref="GeneID:1254037" /translation="MDRNRQVNKVVHFLLTLLIMFAVSIAPAQALLKGGTWQELNSVT GAVNGTAPLADGAIIPLYQGSTLLDPSKTHDIEFSAMPRDFSADATSTSMRAVNSTDT EGDLFSDPPTIAWENRQPPAMGLVWADAATPDTPLSPQPVPNLTFCAQNLAGRQLVAW AQVEDETNVPALWLFTRTGVPNYATIPLLSPKVALNIKPATDTPVTVSGDHVDSAFEA SKVKVGESITLTISTKACDGTPEGNAPFVIRRKDAENRQGVVNNANPVRVGDTELTTT QTEYRGVTDANGNATVVVTQKEGPGVKTPLVVSSVNFPALTAETAVIFTTITSPDSDK ASMYGHMIESATATLNGITYTFTRPKLAAEASGADKSVVDTNETWALFTWSGADNHCD ILPDAEQLVQMRHEHSTLETWTGWPVAGDAEYWSSTKNQLSGYHAAVHMNSASVVRAA DSDTLLVSCVDKAQPAAHPQITLSPQGPYKAQVGESIDLTMTVVDRDTQKPLPYRYME LFIDPAKNRKGEHQDAWDNLRVTVDSEGMSASSPEHYTGVTDVNGQAHLTLKHNSGLG VETPIRIVMPDDEGGNVELSFSVIFTVVTSPDVDGANMWGHMRGVVDAGNLYKRPLLA VEASHKDGQFSENNEEWATFNSVASATAQCGVGQVPDQSSLAHLYSEHAGGQMESEHG WPTEDYFIAADSDASGTVHVNLENGDSGKFTDTPNYLTCSANEMVAVLDVYFNDDPVI KNADAKVGEQVKMNIHSRNALNGMAIGNTDFTITMANGRRRDGLTTGFTDTSNGEMQF DDVGYVAGQVYHGITDANGDATIILTQKKGVGLLTPLNIAPVDSLISTPVSRSVKFTV ATSPDTPAAKMWGHMADTITVGDWTFERPKLAGEVSNPLRTQDESNETWARVAHSDAV GNPDAGGCAANRLPRIDQLEALYNANSGGKIHSIQGWPTYLNYWSSTYQSATTWKLIA LTNGSEFANSNVSIYASCLASDNPVAASITIEPVNPSQWYDGSDVHAVKVKKGETMQL KVTVKDVSGNPIPEAPFVLTRGDGYDRRGEKYTAQDGDDLQGIVTPVVIDGESLAWTT TKMGSQTGTDGTRIISVTRPDTHGTRTAINATLYENAAVSASIDTIFTVVTSPDVSVA RMWGHMAPSLTAADGAVYQRPLLYAELSSTDNTASKQETNETWAVFHGPASEGANPAR CAAGYYPAVEALDSLYSKYPSRTINTAQGWPVYYSYWSGSNSTSFSSGAKLDFYYAVD LADGSRRSENSATSTAWQYQICATTPLPQATQITLTSPQAMDDAIQAVKAKNSESIPL LITTTDAMGNPVPYATFSLKRDAGKARNPDYNKFVATNGTNMTVTPLTGAQQQFYYAT SVLTGATGADGTLALTLAEPGGIGLKNQLTANLNDTPTATSSLPVVFTVLTSPDSDKA NMYGHMPETFTASNGAEFKRPLVAGEPSSEAHTDTYFETNENWIMVNSFNTGNYGGCP MNQMAAIDDFTALYNDHPSGKVATDIGLPVGKRWWAGDSLLKGSTLYWQYKDLKTGKN YSMSENPGNYYLQLCLTTSRSGLNIALSSDAWNADKSAAVAKKGETIPMTVTVTNDAG QPQAGVAVLLTRDYAYSRGAVDKQYIEPGVIGEPVPFTTSPANMMLAPVAPAGTAVAF NNQNGLSTKWSGFTGDDGKLRFTLTQDKSLGLKTSVTAALANQFDEAASVDAIFTVQT SPDTPYASYWGHMPDTVQVNGVTLRRPYLKAELSAAPRDTWPFNNEFWGTNYYYQSEH VETSLTHLCGSQENIASLDDLKALQSVIGTLQWPTTSSWDYVSQDEGQSNKYYCSFNE TTGQTTCTREKATTSGLGSCRVP" misc_feature complement(2641878..2647472) /gene="ratA" /locus_tag="STM2515" /note="outer membrane protein RatA; Provisional; Region: PRK15315" /db_xref="CDD:237941" regulatory complement(2647471..2647476) /regulatory_class="ribosome_binding_site" /gene="ratA" /locus_tag="STM2515" /note="putative RBS for ratA; RegulonDB:STMS1H002622" gene complement(2647592..2648558) /gene="sinI" /locus_tag="STM2516" /db_xref="GeneID:1254038" CDS complement(2647592..2648551) /gene="sinI" /locus_tag="STM2516" /note="SinI (gi|4583530)" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_461451.1" /db_xref="GeneID:1254038" /translation="MQATVKRRLTKVALALVVAGYCAAPAVAANGNLKSGQWQIVSEQ TGTIQGTVPWITRAADKTADTDKDHVTVTIDRGDRKIVTEGDKQFHVGDKVTVNWAIG DTEGDLDTDNTATKATVKWVSFSDQNGSDPKDLGTGDSYEIQAADADRYIGIKITPTT TTGDPAVATELLLKDLSTDAGGGSDDDEIPEGPVVDENVHVVIHEKDSNTNLLKNSGT TLKTNTTYQVLLWSDKNGNGTYDAGENVTDQYDYRWKFVGTSKIAGTGTGGIVNESWN DKDLVIPVTNAEAKTAFEGADGGVTVGSDGVQGFGLSIDYKRK" misc_feature complement(2647604..2648536) /gene="sinI" /locus_tag="STM2516" /note="SinI family autotransporter-associated protein; Region: partner_SinI; NF040711" /db_xref="CDD:468675" regulatory complement(2648553..2648558) /regulatory_class="ribosome_binding_site" /gene="sinI" /locus_tag="STM2516" /note="putative RBS for sinI; RegulonDB:STMS1H002623" gene complement(2648609..2650807) /gene="sinH" /locus_tag="STM2517" /db_xref="GeneID:1254039" CDS complement(2648609..2650801) /gene="sinH" /locus_tag="STM2517" /note="similar to Escherichia coli intimin and Yersinia pestis invasin proteins; (gi|4583531)" /codon_start=1 /transl_table=11 /product="SinH" /protein_id="NP_461452.1" /db_xref="GeneID:1254039" /translation="MVRRIRILVLLLVSGVSVAASGADNSASANDESHSSLPDLASES AKKEEQENKGKSFKEQGADYFINSATQGFDNLTPEALESQARSYLQNQITSSAQSYLE GVMSPYGKIRTSLSVGEGGDLDGSSLDYFIPWYDNQSTLFFSQISAQRKEDRTIGNFG LGVRQNVGNWLLGGNAFYDYDFTRGHRRLGLGTEAWTDYLKFSGNYYHPLSDWKDSED FDFYEERPARGWDIRMESWLPFYPQLGAKLVYEQYYGDEVALFGTDNLQKDPHAVTLG LEYTPVPLVTVGTDYKAGTGDSNDFSVNATVNYQIGTPLAAQLDPENVKIQHSLMGSR TDFVDRNNFIILEYREKDPLDVTLWLKADATNEHPECVIEDTPEAAVGLEKCKWTVNA LINHHYKIISASWQAKNNAARTLVMPVVKANALTEGNNNSWNLVLPAWVNADTEEQRT ALNTWKVRMTLEDEKGNKQNSGVVEITVQQDRKIELIVDNIADTDRSDHSHEASALAD GEDGVVMDLLITDSFGDSTDRNGNELVDDAMTPVLYDSNDKKVTLAQTPCTTETPCVF IASRDKEAGTVTLSSTLPGTFRWKAKADAYGDSNYVDVTFIGDNLSALNAVIYQVKAA NPVNLIGKEDKHPTVNNAYRFLLWRDKNKDGVFQMSEQLTEEEMALYDYQWEFTGQST NGHTGALANTMNEDLVLPVTNKEAAQKFAANVEDGVQGYGIRVTYSQK" misc_feature complement(2648612..2650801) /gene="sinH" /locus_tag="STM2517" /note="intimin-like protein SinH; Provisional; Region: PRK15318" /db_xref="CDD:237943" regulatory complement(2650802..2650807) /regulatory_class="ribosome_binding_site" /gene="sinH" /locus_tag="STM2517" /note="putative RBS for sinH; RegulonDB:STMS1H002624" gene complement(2651147..2651380) /gene="yfgJ" /locus_tag="STM2518" /db_xref="GeneID:1254040" CDS complement(2651147..2651368) /gene="yfgJ" /locus_tag="STM2518" /note="similar to E. coli orf, hypothetical protein (AAC75563.1); Blastp hit to AAC75563.1 (83 aa), 63% identity in aa 13 - 83" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461453.1" /db_xref="GeneID:1254040" /translation="MEITCPVCHHALERNGDTAHCETCAKDFSLQALCPDCRQPLQVL KACGAVDYFCQNGHGLISKKRVNFVISDQ" misc_feature complement(2651165..2651356) /gene="yfgJ" /locus_tag="STM2518" /note="Region: zinc-ribbons_6; pfam07191" /db_xref="CDD:429341" regulatory complement(2651375..2651380) /regulatory_class="ribosome_binding_site" /gene="yfgJ" /locus_tag="STM2518" /note="putative RBS for yfgJ; RegulonDB:STMS1H002625" gene complement(2651457..2652941) /gene="engA" /locus_tag="STM2519" /db_xref="GeneID:1254041" CDS complement(2651457..2652929) /gene="engA" /locus_tag="STM2519" /note="similar to E. coli putative GTP-binding factor (AAC75564.1); Blastp hit to AAC75564.1 (503 aa), 97% identity in aa 14 - 503" /codon_start=1 /transl_table=11 /product="putative GTP-binding protein" /protein_id="NP_461454.1" /db_xref="GeneID:1254041" /translation="MVPVVALVGRPNVGKSTLFNRLTRTRDALVADFPGLTRDRKYGR AEVEGREFICIDTGGIDGTEDGVETRMAEQSLLAIEEADVVLFMVDARAGLMPADEAI AKHLRSREKPTFLVANKTDGLDPDQAVVDFYSLGLGEIYPIAASHGRGVLSLLEHVLL PWMDDVAPQEEVDEDAEYWAQFEAEQNGEEAPEDDFDPQSLPIKLAIVGRPNVGKSTL TNRILGEERVVVYDMPGTTRDSIYIPMERDEREYVLIDTAGVRKRGKITDAVEKFSVI KTLQAIEDANVVLLVIDAREGISDQDLSLLGFILNSGRSLVIVVNKWDGLSQEVKEQV KETLDFRLGFIDFARVHFISALHGSGVGNLFESVREAYDSSTRRVSTAMLTRIMTMAV EDHQPPLVRGRRVKLKYAHAGGYNPPIVVIHGNQVKDLPDSYKRYLMNYFRKSLEVMG TPIRIQFKEGENPYANKRNTLTPTQMRKRKRLMKHIKKSK" misc_feature complement(2651544..2652923) /gene="engA" /locus_tag="STM2519" /note="GTP-binding protein Der; Reviewed; Region: PRK00093" /db_xref="CDD:234628" regulatory complement(2652936..2652941) /regulatory_class="ribosome_binding_site" /gene="engA" /locus_tag="STM2519" /note="putative RBS for engA; RegulonDB:STMS1H002626" gene complement(2653048..2654236) /gene="yfgL" /locus_tag="STM2520" /db_xref="GeneID:1254042" CDS complement(2653048..2654226) /gene="yfgL" /locus_tag="STM2520" /note="similar to E. coli putative dehydrogenase (AAC75565.1); Blastp hit to AAC75565.1 (392 aa), 91% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="putative serine/threonine protein kinase" /protein_id="NP_461455.1" /db_xref="GeneID:1254042" /translation="MQLRKLLLPGLLSVTLLSGCSLFSGEEDVVKMSPLPQVENQFTP TTVWSTSVGNGIGEFYSNLHPVMVDNVVYAADRAGVVKALNADDGKEIWSVNLGEKDG WFSRSSALLSGGVTVAGGHVYIGSEKAEVYALNTSDGTTAWQTKVAGEALSRPVVSDG IVLIHTSNGQLQALNQADGAIKWTVNLDMPSLSLRGESAPATAFGAAIVGGDNGRVSA VLMQQGQMIWQQRISQATGPTEIDRLSDVDTTPVVVNGVVYALAYNGNLTALDLRSGQ IMWKRELGSVNDFIVDGDRIYLVDQNDRVLALTTDGGVTLWTQSDLLHRLLTSPVLYN GDLVVGDSEGYLHWINVDDGRFVAQQKVDSSGFLTEPTVADGKLLIQAKDGTVYAITR " misc_feature complement(2653051..2654190) /gene="yfgL" /locus_tag="STM2520" /note="outer membrane biogenesis protein BamB; Provisional; Region: PRK11138" /db_xref="CDD:236857" misc_feature complement(order(2653153..2653155,2653162..2653170, 2653177..2653179,2653183..2653185,2653276..2653278, 2653285..2653293,2653300..2653302,2653306..2653308, 2653390..2653392,2653399..2653407,2653414..2653416, 2653420..2653422,2653543..2653545,2653552..2653560, 2653567..2653569,2653573..2653575,2653678..2653680, 2653687..2653695,2653702..2653704,2653708..2653710, 2653798..2653800,2653807..2653815,2653822..2653824, 2653828..2653830,2653948..2653950,2653957..2653965, 2653972..2653974,2653978..2653980,2654083..2654085, 2654092..2654100)) /gene="yfgL" /locus_tag="STM2520" /note="Trp docking motif [polypeptide binding]; other site" /db_xref="CDD:199833" misc_feature complement(order(2653246..2653248,2653438..2653440, 2653636..2653638,2653723..2653728,2653771..2653773, 2653888..2653890,2653903..2653905,2654041..2654043)) /gene="yfgL" /locus_tag="STM2520" /note="active site" /db_xref="CDD:199833" regulatory complement(2654231..2654236) /regulatory_class="ribosome_binding_site" /gene="yfgL" /locus_tag="STM2520" /note="putative RBS for yfgL; RegulonDB:STMS1H002627" gene complement(2654237..2654872) /gene="yfgM" /locus_tag="STM2521" /db_xref="GeneID:1254043" CDS complement(2654237..2654857) /gene="yfgM" /locus_tag="STM2521" /note="similar to E. coli orf, hypothetical protein (AAC75566.1); Blastp hit to AAC75566.1 (206 aa), 88% identity in aa 1 - 206" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461456.1" /db_xref="GeneID:1254043" /translation="MEIYENEHDQVDAIKRFFAENGKALAVGVILGVGALVGWRYWSS HQTESARAASLAYQNAVTAVSADKPDSIPAAEKFAAENKNTYGALASMELAQQFVDKN ELKKAEAQLQQGLAATSDENLKAVINLRLARVQLQLKQADAALKTLDAVKGEGWTAIV ADLRGEALLSKGDKKGARSAWEAGVNSDASPALSEMMQMKINNLSI" misc_feature complement(2654246..2654857) /gene="yfgM" /locus_tag="STM2521" /note="Putative negative regulator of RcsB-dependent stress response, UPF0070 family [Signal transduction mechanisms]; Region: YfgM; COG2976" /db_xref="CDD:442215" regulatory complement(2654867..2654872) /regulatory_class="ribosome_binding_site" /gene="yfgM" /locus_tag="STM2521" /note="putative RBS for yfgM; RegulonDB:STMS1H002628" gene complement(2654871..2656161) /gene="hisS" /locus_tag="STM2522" /db_xref="GeneID:1254044" CDS complement(2654871..2656145) /gene="hisS" /locus_tag="STM2522" /EC_number="6.1.1.21" /note="histidyl-tRNA synthetase. (SW:SYH_SALTY)" /codon_start=1 /transl_table=11 /product="histidine tRNA synthetase" /protein_id="NP_461457.1" /db_xref="GeneID:1254044" /translation="MAKNIQAIRGMNDYLPGETAIWQRIEGTLKNVLGSYGYSEIRLP IVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGLLYNQE QRLWYIGPMFRHERPQKGRYRQFHQLGAEVFGLQGPDIDAELIMLTARWWRALGIAEH VSLELNSIGSLEARANYRDALVAFLEQHQETLDEDCKRRMYTNPLRVLDSKNPDVQAL LNDAPALGDYLDDDSREHFAGLCKLLDAAGIAYTVNQRLVRGLDYYNRTVFEWVTNSL GSQGTVCAGGRYDGLVEQLGGRATPAVGFAMGLERLVLLVQAVNPEFIASPVVDIYLV AAGAQTQSAAMTLAERLRDEMPGVKLMTNHGGGNFKKQFARADKWGARIALVLGESEV ADGTVVVKDLRSGEQTAVAQDSVAAHLRTLLG" misc_feature complement(2654874..2656142) /gene="hisS" /locus_tag="STM2522" /note="Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: HisS; COG0124" /db_xref="CDD:439894" regulatory complement(2656156..2656161) /regulatory_class="ribosome_binding_site" /gene="hisS" /locus_tag="STM2522" /note="putative RBS for hisS; RegulonDB:STMS1H002629" gene complement(2656256..2657384) /gene="gcpE" /locus_tag="STM2523" /db_xref="GeneID:1254045" CDS complement(2656256..2657374) /gene="gcpE" /locus_tag="STM2523" /note="involved in density-dependent regulation of peptidoglycan biosynthesis; similar to E. coli orf, hypothetical protein (AAC75568.1); Blastp hit to AAC75568.1 (372 aa), 98% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461458.1" /db_xref="GeneID:1254045" /translation="MHNQAPIQRRKSTRIYVGNVPIGDGAPIAVQSMTNTRTTDVEAT VNQIKALERVGADIVRVSVPTMDAAEAFKLIKQQVNVPLVADIHFDYRIALKVAEYGV DCLRINPGNIGNEERIRMVVDCARDKNIPIRIGVNAGSLEKDLQEKYGEPTPQALLES AMRHVDHLDRLNFDQFKVSVKASDVFLAVESYRLLAKQIDQPLHLGITEAGGARSGAV KSAIGLGLLLSEGIGDTLRVSLAADPVEEIKVGFDILKSLRIRARGINFIACPTCSRQ EFDVIGTVNALEQRLEDIITPMDVSIIGCVVNGPGEALVSTLGVTGGNKKSGLYEDGV RKDRLDNDDMIAQLESRIRAKASQLDEARRIDVLQVEK" misc_feature complement(2656298..2657374) /gene="gcpE" /locus_tag="STM2523" /note="flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase; Region: ispG; PRK00366" /db_xref="CDD:234737" regulatory complement(2657379..2657384) /regulatory_class="ribosome_binding_site" /gene="gcpE" /locus_tag="STM2523" /note="putative RBS for gcpE; RegulonDB:STMS1H002630" gene complement(2657401..2658405) /gene="yfgA" /locus_tag="STM2524" /db_xref="GeneID:1254046" CDS complement(2657401..2658405) /gene="yfgA" /locus_tag="STM2524" /note="similar to E. coli putative membrane protein (AAC75569.1); Blastp hit to AAC75569.1 (337 aa), 83% identity in aa 1 - 337" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461459.1" /db_xref="GeneID:1254046" /translation="MNTEATHDQNEAQTTGVRLRNAREQLGLSQQAVAERLCLKVSTV RDIEEDKAPSDLASTFLRGYIRSYARLVHVPEEELLPGLEKQAPLRAAKVAPMQSFSL GKRRKKRDGWLMSFTWLVLFVVVGLTGAWWWQNHKAQQEEITTMADQSTAELNADKDS GQSVPLDTGAATSQDTTPAQTAPAPATPVDSTAATQTPAPTAAATQNTVVAPSQANVD TAATSAAPAATETPSALPTSQAGVAAPAADPNALVMNFTADCWLEVTDATGKKLFSGM QRKDGNLNLTGQAPYKLKIGAPAAVQIQYQGKPVDLSRFIRTNQVARLTLNAEPTPAQ " misc_feature complement(2657419..2658405) /gene="yfgA" /locus_tag="STM2524" /note="cytoskeleton protein RodZ; Region: PRK10856" /db_xref="CDD:236776" gene complement(2658697..2659875) /gene="yfgB" /locus_tag="STM2525" /db_xref="GeneID:1254047" CDS complement(2658697..2659863) /gene="yfgB" /locus_tag="STM2525" /note="similar to E. coli orf, hypothetical protein (AAC75570.1); Blastp hit to AAC75570.1 (384 aa), 95% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="putative Fe-S-cluster redox enzyme" /protein_id="NP_461460.1" /db_xref="GeneID:1254047" /translation="MSEQIVTPESSTPVVPNKETKINLLDLNRQQMREFFKNLGEKPF RADQVMKWMYHYCCDNFDEMTDINKVLRGKLKEVAEIRAPEVVEEQRSSDGTIKWAIA VGDQRVETVYIPEDDRATLCVSSQVGCALECKFCSTAQQGFNRNLRVSEIIGQVWRAA KIVGAAKVTGQRPITNVVMMGMGEPLLNLTNVVPAMEIMLDDFGFGLSKRRVTLSTSG VVPALDKLGDMIDVALAISLHAPNDTIRDEIVPINKKYNIETFLGAVRRYLEKSNANQ GRVTIEYVMLDHVNDGTEHAHQLAELLKETPCKINLIPWNPFPGAPYGRSSNSRIDRF SKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVIDRTKRTLRKRMQGEVIDIKAI" misc_feature complement(2658700..2659812) /gene="yfgB" /locus_tag="STM2525" /note="ribosomal RNA large subunit methyltransferase N; Provisional; Region: PRK11194" /db_xref="CDD:183031" misc_feature complement(order(2658919..2658924,2659012..2659014, 2659153..2659155,2659213..2659221,2659312..2659317, 2659321..2659323,2659453..2659461,2659465..2659467, 2659471..2659473,2659477..2659479)) /gene="yfgB" /locus_tag="STM2525" /note="FeS/SAM binding site [active]" /db_xref="CDD:100105" regulatory complement(2659870..2659875) /regulatory_class="ribosome_binding_site" /gene="yfgB" /locus_tag="STM2525" /note="putative RBS for yfgB; RegulonDB:STMS1H002631" gene complement(2660070..2660510) /gene="ndk" /locus_tag="STM2526" /db_xref="GeneID:1254048" CDS complement(2660070..2660501) /gene="ndk" /locus_tag="STM2526" /EC_number="2.7.4.6" /note="similar to E. coli nucleoside diphosphate kinase (AAC75571.1); Blastp hit to AAC75571.1 (143 aa), 96% identity in aa 1 - 143" /codon_start=1 /transl_table=11 /product="nucleoside diphosphate kinase" /protein_id="NP_461461.1" /db_xref="GeneID:1254048" /translation="MAIERTFSIIKPNAVAKNVIGSIFARFEAAGFKIVGTKMLHLTV EQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLESENAVQRHRDLLGATNPANALAGT LRADYADSLTENGTHGSDSLESAQREIAFFFGEGEVCPRTR" misc_feature complement(2660079..2660498) /gene="ndk" /locus_tag="STM2526" /note="Nucleoside diphosphate kinase [Nucleotide transport and metabolism]; Region: Ndk; COG0105" /db_xref="CDD:439875" regulatory complement(2660505..2660510) /regulatory_class="ribosome_binding_site" /gene="ndk" /locus_tag="STM2526" /note="putative RBS for ndk; RegulonDB:STMS1H002632" gene complement(2660622..2661485) /locus_tag="STM2527" /db_xref="GeneID:1254049" CDS complement(2660622..2661485) /locus_tag="STM2527" /note="similar to E. coli hydrogenase 4 Fe-S subunit (AAC75541.1); Blastp hit to AAC75541.1 (181 aa), 36% identity in aa 33 - 124, 40% identity in aa 42 - 90" /codon_start=1 /transl_table=11 /product="putative polyferredoxin" /protein_id="NP_461462.1" /db_xref="GeneID:1254049" /translation="MVNLTIDPAVDVTQACVRRRFRFSSCRACADVCPAQAFSLAQGQ VSIDTTRCIACGDCLFVCPVDAITGIKPVKRFVQGDTLVGPFSLQAPTVDELLLWHSQ YGIRFIDIAVERSAQWLMALARLNLALRRYGEPGWSFKHVVGAEINASRRTLFHVPRD AITPCAVEPGKRRLRQAFSAFSECVPEISPQECRMCGACWRSCPENVIQFDDNTLTIA AARCTGCGGCAAVCPHQALRLRFDVEPASTRHSTAYTLTCDICKRTFHALTPEHTHCV LCQSPEFAVRL" misc_feature complement(2661264..>2661404) /locus_tag="STM2527" /note="Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Inorganic ion transport and metabolism]; Region: DsrA; COG2221" /db_xref="CDD:441823" misc_feature complement(2660766..2660933) /locus_tag="STM2527" /note="MinD superfamily P-loop ATPase, contains an inserted ferredoxin domain [General function prediction only]; Region: COG1149" /db_xref="CDD:440763" misc_feature complement(<2660631..>2660822) /locus_tag="STM2527" /note="ferredoxin; Provisional; Region: PRK06273" /db_xref="CDD:235764" gene complement(2661485..2662300) /locus_tag="STM2528" /db_xref="GeneID:1254050" CDS complement(2661485..2662294) /locus_tag="STM2528" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit C (AAC73982.1); Blastp hit to AAC73982.1 (287 aa), 32% identity in aa 6 - 277" /codon_start=1 /transl_table=11 /product="putative dimethylsulfoxide reductase" /protein_id="NP_461463.2" /db_xref="GeneID:1254050" /translation="MHELPLLIFTLCLQGSVGVTVWLALGRQYAVEGRVPARGALPAM AGAFVLACVGLLASALHMGYPLNALNALRHVASSWLSREIVFASLYLAALGLGIVLLF FRKPGWQPLLALAAAFGLVDVFCMAQVYIHASVATWQHSNTLALFFGTSGIIGSVVIA LAYLRNAGAAMRCAVVVVALMVLIRLIMQPLWLADINAVDTTVVTFPHHPLQALAQLR DVYLLGWCVSAAGMLCFAAGGLRNARGTLVAGSVLLLLGEIMLRYVFFSIG" misc_feature complement(2661497..2662294) /locus_tag="STM2528" /note="DMSO reductase anchor subunit DmsC [Energy production and conversion]; Region: DmsC; COG3302" /db_xref="CDD:442531" gene complement(2662287..2662923) /locus_tag="STM2529" /db_xref="GeneID:1254051" CDS complement(2662287..2662916) /locus_tag="STM2529" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); Blastp hit to AAC73981.1 (205 aa), 56% identity in aa 4 - 193" /codon_start=1 /transl_table=11 /product="putative anaerobic dimethylsulfoxide reductase" /protein_id="NP_461464.1" /db_xref="GeneID:1254051" /translation="MSQFTHYPPVSDKQLGFFIDSSRCSGCKACQVACKDKNNLEVGR RFRRVYEVKGGSFIPTGQGGVSNNVFAYTLSISCNHCADPVCTKNCPTTAMHKRPGDG IVRVDTDKCVGCGYCAWSCPYGAPQLNEQTGQMSKCDMCVDLLAKGEPPVCVATCPLE AIKFGPIDELRAKYGSVCDVNGLPDSSITKPNLVVKAHQGAEKEGKRHA" misc_feature complement(2662392..2662877) /locus_tag="STM2529" /note="DMSO reductase, iron-sulfur subunit; Region: DMSO_dmsB; TIGR02951" /db_xref="CDD:131996" regulatory complement(2662295..2662300) /regulatory_class="ribosome_binding_site" /locus_tag="STM2529" /note="putative RBS for STM2528; RegulonDB:STMS1H002633" gene complement(2662913..2665318) /locus_tag="STM2530" /db_xref="GeneID:1254052" CDS complement(2662913..2665318) /locus_tag="STM2530" /note="similar to E. coli putative oxidoreductase, major subunit (AAC74660.1); Blastp hit to AAC74660.1 (808 aa), 42% identity in aa 15 - 807" /codon_start=1 /transl_table=11 /product="putative anaerobic dimethylsulfoxide reductase" /protein_id="NP_461465.1" /db_xref="GeneID:1254052" /translation="MGFYLTSRIMKNIKSQGNGEQPAISRRHFIQASSALIALPFVSS PATAQARAVTATENRPAEKVVQTCSTFDCGGKCDIRAHVSDGIVTRISTRPDNALDAQ MPVMRACVRGRAYRKFVYHPDRLKYPMKRVGKRGEGKFERISWDEATTLIADNLKSIT EKYGPASRYVHVGTAVSGGTFSGDKMARRLLNLTGGYLESYHSVSMGNTAAATPYTYG IAASGSSLDTLLDTKLVILWGHNPTETIFGHTNYFLQKMKQNGTRFIVVDPRYSDTVS SLADQWIPLLPTTDNALMDAMMYVIISENLHDRAFIARYAIGFDEDSMPEGVPANESL VAYLTGAKDGVVKSPEWAEKITHVPAQTIRQLARDYANTKPAALIQGWGPQRHNCGER TARGSTLLATITGNVGIKGGWAAGYGGCANRKFAAGPEMPDNPVKAKISVMNWVQAAD DASKVTPDMGLKDADKLDSNIRILFSLAGNYLANQNPDLHQAVRVLEDESKIQFIVAS DLFMTPSAKYADLLLPETSFMERWNIGETWGTASYLILSEKLIEPEFERRSDYDWLRE VAAKLGIENEFSQGRDEKAWIEHIWEQTRLAMPDENLPDFATLQKTRQHLFKSAPFIA FEDNIRDPENHPFPTPSGKIEIFSKRLYDMQHPEIPALSHYVPAHEGPEDALAKDFPL QLITWKGKNRANSTQYANPWLIEVQQQTLWINPQDAQKRGITHGDMVRIHNSRGICEI PAEVTPRIIPGVVAMQAGAWWQPDENGVDKGGCANVLSSARITALAKGNSHQTMLVEV AKA" misc_feature complement(2662916..2665249) /locus_tag="STM2530" /note="anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Region: dmsA_ynfE; TIGR02166" /db_xref="CDD:274006" regulatory complement(2662918..2662923) /regulatory_class="ribosome_binding_site" /locus_tag="STM2529" /note="putative RBS for STM2529; RegulonDB:STMS1H002634" gene complement(2665447..2667762) /gene="pbpC" /locus_tag="STM2531" /db_xref="GeneID:1254053" CDS complement(2665447..2667762) /gene="pbpC" /locus_tag="STM2531" /note="similar to E. coli putative peptidoglycan enzyme (AAC75572.1); Blastp hit to AAC75572.1 (770 aa), 82% identity in aa 7 - 767" /codon_start=1 /transl_table=11 /product="transglycosylase of penicillin-binding protein 1c" /protein_id="NP_461466.1" /db_xref="GeneID:1254053" /translation="MNGWRGKRGRWLWLAGAPLFIFLALWAADKLWPLPLNEVHPARV VVAHDGTPLWRFADAGGIWRYPVTIEEVSPRYLEALINYEDRWFWRHPGVNPFSVARA AWQDLTAGRVISGGSTLTMQVARLLDPHSRTFGGKIRQLWRALQLEWHLSKRDILTLY LNRAPFGGTLQGIGAASWAYFGKPPARLSYADAALLAVLPQAPSRLRPDRWPARAEAA RNKVLDRMAAQGVWPAETVRESREEPVWLAPRQMPQLAPLFARMMLSKSQNDKIVTTL DAGLQRQLEDLARAWKGRLPARSSLAMIVVDHTDMSVRGWVGSVDLNDDSRFGHVDMV TAIRSPGSVLKPFVYGLALDDGLIHPASLLQDVPRRTGDYRPGNFDSGFHGPVSMSDA LVRSLNLPAVQVLEAYGPKRFAAKLRNVGLPLYLPAGAAPNLSLILGGAGARLDEMAA AYSAFARHGKAAKLRLQPDDPLSERPLMSPGAAWIIRRIMADEAQPLPDNALPRIVPL AWKTGTSYGYRDAWAIGVNARYIIGIWTGRPDGTPVVGQFGFASAVPLLNQVNNLLLA HTGRLPEDPRPQAVSRGVICWPGGQTLPAGDSNCRRRLATWLLDDSQPPTLLLPEQED INGIRFPVWLDDTGRRVAADCPQARAHTFIVWPRPLEPWLPPAERRSARLPAASDHCP PLQGNDAAPLMLSGVRDGAVIRQLPGQENVTLPVSTTGGKGRRWWFLNGEPVNGENNR LSLLLNIAGRYQLVVMDESGQVAAVNFELIR" misc_feature complement(2665456..2667753) /gene="pbpC" /locus_tag="STM2531" /note="penicillin-binding protein 1C; Provisional; Region: PRK11240" /db_xref="CDD:183049" gene complement(2667763..2672709) /locus_tag="STM2532" /db_xref="GeneID:1254054" CDS complement(2667763..2672697) /locus_tag="STM2532" /note="similar to E. coli orf, hypothetical protein (AAC75573.1); Blastp hit to AAC75573.1 (1653 aa), 81% identity in aa 1 - 1653" /codon_start=1 /transl_table=11 /product="putative inner membrane lipoprotein" /protein_id="NP_461467.1" /db_xref="GeneID:1254054" /translation="MKHLRVVACMIMLALAGCDNNDKTAPTTKSEAPAVAQPSPAQDP AQLQKLAQQSQGKALTLLDASEAQLDGAATLVLTFSIPLDPEQDFSRVVHVVDKKSGS VDGAWELAPNLKELRLRHLEPERVLVVTVDPAVKALNNATFGKSYEKTITTRDVQPSV GFASRGSLLPGKIAEGLPVMALNVNHVDVNFFRVKPGSLASFVSQWEYRSSLSNWESD NLLKMADLVYTGRFDLNPARNTREKLLLPLSDIKPLQQAGVYVAVMNQAGHYNYSNAA TLFTLSDIGVSAHRYHNRLDIFTQSLENGAAQSGIEIVLLNDKGQTLAQATSDAQGHV QLEADKAAALLLARKEEQTTLLDLTLPALDLSEFNVAGAPGYSKQFFMFGPRDLYRPG ETVILNGLLRDSDGKTLPDQPVKLEVVKPDGQVMRTVVSQPENGLYRLNYPLDINAPT GLWHVRANTGDNLLRSWDFHVEDFMPERMALNLTAQKTPLAPADEVKFSVVGYYLYGA PANGNTLQGQLFLRPLRDAVAALPGFQFGNIAEENLSRSLDEVQLTLDKGGRGEVSAA SQWQEAHSPLQVILQASLLESGGRPVTRRVEQAIWPADTLPGIRPQFAAKAVYDYRTD TTVNQPIVDEDSNAAFDIVYANAQGEKKAVSGLQVRLIRERRDYYWNWSESEGWQSQF DQKDLVEGEQTLDLNADETGKVSFPVEWGAYRLEVKAPNETVSSVRFWAGYSWQDNSD GSGAARPDRVTLKLDKANYRPGDTMKLHIAAPVAGKGYAMVESSDGPLWWQAIDVPAQ GLELTIPVDKTWNRHDLYLSTLVVRPGDKSRSATPKRAVGLLHLPLGDDNRRLDLALE SPAKMRPNQPLTVRVKASVKHGEMPKQINVLVSAVDSGVLNITDYATPDPWQAFFGQK RYGADIYDIYGQVIEGQGRLAALRFGGDGDDLKRGGKPPVNHVNIIAQQAQPITLNEQ GEGVVTLPIGDFNGELRVMAQAWTADDFGRGESKVVVAAPVIAELNMPRFLAGGDVSR LVLDVTNLTDRPQTLNIALAASGLLELLSQQPQPVNLAPGVRTTLFVPVRALEGFGEG EIQATISGLNLPGETLDAQHKQWQIGVRPAWPAQTVNSGIALAPGESWHVPEQHLANI SPATLQGQLLLSGKPPLNLARYIRELKAYPYGCLEQTTSGLFPALYTNAAQLQSLGIT GDSDEKRRAAVDIGISRILQMQRDNGGFALWDENGAEEPWLTAYAMDFLIRAGEQGYS VPPEAINRGNERLLRYLQDPGTMLIRYSDNTQASTFAAQAYAALVLARQQKAPLGTLR EIWERRSQAASGLPLMQLGIALNTMGDARRGEEAITLALNTPRQDERQWIADYGSSLR DNALMLSLLEENNLRPDAQNALLSSLSEQAFGQRWLSTQENNALFLAAHSRQASAGAW QVQTSLEAQPLSGDKALTRNLDADQLAALEVTNTGSQPLWLRLDSSGYPSSAPEPASN VLQIERQILGTDGQRKSLSSLRSGELVLVWLTVVADRNVPDALVVDLLPAGLELENQN LADSSASLPESGSEVQNLLNQMQQADIQYMEFRDDRFVAAVVVNEGQPVTLVYLARAV TPGTYQLAQPQVESMYAPQWRATGASEGLLIVTP" misc_feature complement(2667772..2672631) /locus_tag="STM2532" /note="Uncharacterized conserved protein YfaS, alpha-2-macroglobulin family [General function prediction only]; Region: YfaS; COG2373" /db_xref="CDD:441940" regulatory complement(2672704..2672709) /regulatory_class="ribosome_binding_site" /locus_tag="STM2532" /note="putative RBS for STM2532; RegulonDB:STMS1H002635" gene 2672894..2673748 /gene="sseA" /locus_tag="STM2533" /db_xref="GeneID:1254055" regulatory 2672894..2672899 /regulatory_class="ribosome_binding_site" /gene="sseA" /locus_tag="STM2533" /note="putative RBS for sseA; RegulonDB:STMS1H002636" CDS 2672906..2673748 /gene="sseA" /locus_tag="STM2533" /EC_number="2.8.1.1" /note="similar to E. coli putative thiosulfate sulfurtransferase (AAC75574.1); Blastp hit to AAC75574.1 (334 aa), 80% identity in aa 54 - 332" /codon_start=1 /transl_table=11 /product="putative sulfurtransferase" /protein_id="NP_461468.1" /db_xref="GeneID:1254055" /translation="MTTAFFVAADWLAEHIDDPEIQILDARMAPPGQEHRDMAGEYRA GHIPGALFFDIEALSDRASPLPHMMPRPEAFAVAMRELGVRQDKHLVIYDEGNLFSAP RAWWMLRTFGAEKVSILAGGLAGWQRDEWLLREGEEAHEGGEFEAKFAPQAVVRLTDV LLASHEKTAQIVDARPAARFNAQADEPRPGLRRGHIPGALNVPWTELVYEGELKTTDE LNEVFFSHGVSFDRPIIASCGSGVTAAVVVLALATLDVPDVTLYDGAWSEWGARTDLP VEPA" misc_feature 2672906..2673745 /gene="sseA" /locus_tag="STM2533" /note="3-mercaptopyruvate sulfurtransferase; Provisional; Region: sseA; PRK11493" /db_xref="CDD:236917" gene 2673989..2674663 /locus_tag="STM2534" /db_xref="GeneID:1254056" regulatory 2673989..2673994 /regulatory_class="ribosome_binding_site" /locus_tag="STM2534" /note="putative RBS for STM2534; RegulonDB:STMS1H002637" CDS 2673995..2674663 /locus_tag="STM2534" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461469.1" /db_xref="GeneID:1254056" /translation="MDISLTNLIELVKKVNRNKVPTPMSAEEISRLRVRKYRDPQNTE TTELPESLKALLAYDRDLLSNYNMPVIETLQKSIDNEGVIHSYSPDEEAYYGVGMDSS GIDIEDLMPVWSNDPRLPALIRIDHVGDQAIFIYITERDANGEYPIARMERNEFWLAE SSLVEYLYNIISGAKDIGFTEEDLHLPQWKAQQKMNEQRDAALLDLEDYHEAFWAKLD ALVD" misc_feature 2673998..2674660 /locus_tag="STM2534" /note="Domain of unknown function (DUF5066); Region: DUF5066; pfam16728" /db_xref="CDD:435542" gene complement(2675232..2676017) /gene="sseB" /locus_tag="STM2535" /db_xref="GeneID:1254057" CDS complement(2675232..2676017) /gene="sseB" /locus_tag="STM2535" /note="similar to E. coli enhanced serine sensitivity (AAC75575.1); Blastp hit to AAC75575.1 (261 aa), 90% identity in aa 1 - 261" /codon_start=1 /transl_table=11 /product="enhances serine sensitivity" /protein_id="NP_461470.3" /db_xref="GeneID:1254057" /translation="MIPMSETKNELEILLEKAATEPAHRPAFFRTLLESTVWVPGSAA EGEAIVEDSALDLQHWEKEDGTTVIPFFTSLEALQQAVEDEQAFVVMPARTLFEMTLG ETLFLNAKLPTGKEFMPREISLLLAEEGSPLSTQEVLEGGESLILSEVAEPPSQMIDS LTTLFKTIKPVKRAFLCAIKEHADAQPNLLIGIEADGEIEEIIHAAGNVATDTLPGDE PIDICQVRKGEQGISHFITEHIAPFYERRWGGFLRDFKQNRII" misc_feature complement(2675241..2675978) /gene="sseB" /locus_tag="STM2535" /note="enhanced serine sensitivity protein SseB; Provisional; Region: PRK11611" /db_xref="CDD:183229" gene complement(2676118..2677414) /gene="pepB" /locus_tag="STM2536" /db_xref="GeneID:1254058" CDS complement(2676118..2677401) /gene="pepB" /locus_tag="STM2536" /note="similar to E. coli putative peptidase (AAC75576.1); Blastp hit to AAC75576.1 (456 aa), 91% identity in aa 30 - 456" /codon_start=1 /transl_table=11 /product="putative aminopeptidase" /protein_id="NP_461471.1" /db_xref="GeneID:1254058" /translation="MTEAMKITLSTQPADARWGDKATYSINNDGITLHLNGKDDLGLI QRAARKIDGLGIKQVALTGEGWDTERCWAFWAGYKGPKGVRTVMWPDLDDAQRQELDN RLTIIDWVRDTINAPAEELGPEQLAQRAVDLLCSVACDSVTYRITKGEDLREQNYMGL HTVGRGSERPPVLLALDYNPTGDKDAPVYACLVGKGITFDSGGYSIKQSAFMDSMKSD MGGAATVTGALAFAITRGLNKRVKLFLCCADNLISGNAFKLGDIIRYRNGKNVEVMNT DAEGRLVLADGLIDASAQHPQLIIDMATLTGAAKTALGNDYHALFSFDDTLAGRLLTS AAQENEPFWRLPLAEFHRNQLPSNFAELNNTGSAAYPAGASTAAGFLSHFVENYREGW LHIDCSATYRKAPVEQWAAGATGLGVRTIANLLTA" misc_feature complement(2676121..2677389) /gene="pepB" /locus_tag="STM2536" /note="aminopeptidase B; Provisional; Region: PRK05015" /db_xref="CDD:235330" regulatory complement(2677409..2677414) /regulatory_class="ribosome_binding_site" /gene="pepB" /locus_tag="STM2536" /note="putative RBS for pepB; RegulonDB:STMS1H002638" gene complement(2677648..2677857) /gene="yfhJ" /locus_tag="STM2537" /db_xref="GeneID:1254059" CDS complement(2677648..2677848) /gene="yfhJ" /locus_tag="STM2537" /note="believed to be involved in assembly of Fe-S clusters; similar to E. coli orf, hypothetical protein (AAC75577.1); Blastp hit to AAC75577.1 (66 aa), 92% identity in aa 1 - 66" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461472.1" /db_xref="GeneID:1254059" /translation="MGLKWTDSREIGEALYDAYPDVDPKTVRFTDLHQWICELDDFDD DPNASNEKILEAILLVWLDEAE" misc_feature complement(2677651..2677848) /gene="yfhJ" /locus_tag="STM2537" /note="hypothetical protein; Provisional; Region: PRK10721" /db_xref="CDD:170660" regulatory complement(2677852..2677857) /regulatory_class="ribosome_binding_site" /gene="yfhJ" /locus_tag="STM2537" /note="putative RBS for yfhJ; RegulonDB:STMS1H002639" gene complement(2677860..2678205) /gene="fdx" /locus_tag="STM2538" /db_xref="GeneID:1254060" CDS complement(2677860..2678195) /gene="fdx" /locus_tag="STM2538" /note="electron carrer protein; believed to be involved in assembly of Fe-S clusters; similar to E. coli [2FE-2S] ferredoxin, electron carrer protein (AAC75578.1); Blastp hit to AAC75578.1 (111 aa), 94% identity in aa 1 - 111" /codon_start=1 /transl_table=11 /product="[2FE-2S] ferredoxin" /protein_id="NP_461473.1" /db_xref="GeneID:1254060" /translation="MPKIVILPHQDLCPDGAVLEAETGETILDVALRNGIEIEHACEK SCACTTCHCIVREGFDSLPESSEEEDDMLDKAWGLEPESRLSCQARVTDDDLVIEIPR YTINHAREH" misc_feature complement(2677863..2678192) /gene="fdx" /locus_tag="STM2538" /note="ferredoxin, 2Fe-2S type, ISC system; Region: fdx_isc; TIGR02007" /db_xref="CDD:131062" misc_feature complement(order(2677935..2677940,2678043..2678054, 2678061..2678063,2678070..2678072,2678079..2678084)) /gene="fdx" /locus_tag="STM2538" /note="catalytic loop [active]" /db_xref="CDD:238126" misc_feature complement(order(2677935..2677937,2678043..2678045, 2678052..2678054,2678070..2678072)) /gene="fdx" /locus_tag="STM2538" /note="iron binding site [ion binding]; other site" /db_xref="CDD:238126" gene complement(2678197..2680059) /gene="hscA" /locus_tag="STM2539" /db_xref="GeneID:1254061" CDS complement(2678197..2680047) /gene="hscA" /locus_tag="STM2539" /note="member of Hsp70 protein family; believed to be involved in assembly of Fe-S clusters; similar to E. coli heat shock protein, chaperone, member of Hsp70 protein family (AAC75579.1); Blastp hit to AAC75579.1 (616 aa), 94% identity in aa 1 - 616" /codon_start=1 /transl_table=11 /product="chaperone protein" /protein_id="NP_461474.1" /db_xref="GeneID:1254061" /translation="MALLQISEPGLSAAPHQRRLAAGIDLGTTNSLVATVRSGQAETL PDHEGRHLLPSVVHYQQQGHTVGYAARDNAAQDTANTISSVKRMMGRSLADIQTRYPH LPYRFKASVNGLPMIDTAAGLLNPVRVSADILKALAARASESLSGELDGVVITVPAYF DDAQRQGTKDAARLAGLHVLRLLNEPTAAAIAYGLDSGKEGVIAVYDLGGGTFDISIL RLSRGVFEVLATGGDSALGGDDFDHLLADYIREQAGIADRSDNRVQRELLDAAIAAKI ALSDADTVRVNVAGWQGEITREQFNDLISALVKRTLLACRRALKDAGVEPQDVLEVVM VGGSTRVPLVRERVGEFFGRTPLTAIDPDKVVAIGAAIQADILVGNKPDSEMLLLDVI PLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCRS LARFALRGIPPLPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDGE IASMIKDSMSFAEQDVKARMLAEQKVEAARVLESLTGALTADAALLSAAERQCIDDAA AHLSAVAQGDDVDAIEQAIKNVDKQTQEFAARRMDQSVRRALKGHSVDEV" misc_feature complement(2678200..2680047) /gene="hscA" /locus_tag="STM2539" /note="chaperone protein HscA; Provisional; Region: hscA; PRK05183" /db_xref="CDD:235360" regulatory complement(2678200..2678205) /regulatory_class="ribosome_binding_site" /gene="fdx" /locus_tag="STM2538" /note="putative RBS for fdx; RegulonDB:STMS1H002640" regulatory complement(2680054..2680059) /regulatory_class="ribosome_binding_site" /gene="hscA" /locus_tag="STM2539" /note="putative RBS for hscA; RegulonDB:STMS1H002641" gene complement(2680060..2680608) /gene="hscB" /locus_tag="STM2540" /db_xref="GeneID:1254062" CDS complement(2680060..2680575) /gene="hscB" /locus_tag="STM2540" /note="believed to be involved in assembly of Fe-S clusters; similar to E. coli orf, hypothetical protein (AAC75580.1); Blastp hit to AAC75580.1 (171 aa), 91% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="co-chaperone protein Hsc20" /protein_id="NP_461475.1" /db_xref="GeneID:1254062" /translation="MDYFTLFGLPARYQIDTQALSLRFQDLQRQYHPDKFANGTQAQQ LAAVQQSATINQAWQTLRHPLTRAEYLLSLHGFDLASEQHTVRDTAFLMEQLTLREEL DDIEQSKDDARLESFIKRVQKMFDARLQQMVEQLDNAAWDAAADTVRKLRFLDKLRSS AEQLEEKLLDF" misc_feature complement(2680066..2680575) /gene="hscB" /locus_tag="STM2540" /note="co-chaperone HscB; Provisional; Region: hscB; PRK05014" /db_xref="CDD:179914" regulatory complement(2680579..2680584) /regulatory_class="ribosome_binding_site" /gene="hscB" /locus_tag="STM2540" /note="putative RBS for hscB; RegulonDB:STMS1H002642" regulatory complement(2680584..2680592) /regulatory_class="minus_10_signal" /gene="hscB" /locus_tag="STM2540" /note="putative -10_signal for hscB; RegulonDB:STMLTH004553" regulatory complement(2680600..2680608) /regulatory_class="minus_35_signal" /gene="hscB" /locus_tag="STM2540" /note="putative -35_signal for hscB; RegulonDB:STMLTH004553" gene complement(2680771..2681105) /gene="yfhF" /locus_tag="STM2541" /db_xref="GeneID:1254063" CDS complement(2680771..2681094) /gene="yfhF" /locus_tag="STM2541" /note="similar to E. coli putative regulator (AAC75581.1); Blastp hit to AAC75581.1 (107 aa), 97% identity in aa 1 - 107" /codon_start=1 /transl_table=11 /product="putative regulator" /protein_id="NP_461476.1" /db_xref="GeneID:1254063" /translation="MSITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEF VDEPTAEDTVFEDKGVKVVVDGKSLQFLDGTQLDFVKEGLNEGFKFSNPNVKDECGCG ESFHV" misc_feature complement(2680774..2681094) /gene="yfhF" /locus_tag="STM2541" /note="iron-sulfur cluster assembly protein IscA; Region: iscA; PRK09502" /db_xref="CDD:181914" regulatory complement(2681100..2681105) /regulatory_class="ribosome_binding_site" /gene="yfhF" /locus_tag="STM2541" /note="putative RBS for yfhF; RegulonDB:STMS1H002643" gene complement(2681123..2681523) /gene="nifU" /locus_tag="STM2542" /db_xref="GeneID:1254064" CDS complement(2681123..2681509) /gene="nifU" /locus_tag="STM2542" /note="involved in Fe-S cluster formation; similar to E. coli orf, hypothetical protein (AAC75582.1); Blastp hit to AAC75582.1 (128 aa), 98% identity in aa 1 - 128" /codon_start=1 /transl_table=11 /product="NifU homolog" /protein_id="NP_461477.1" /db_xref="GeneID:1254064" /translation="MAYSEKVIDHYENPRNVGSFDNNDDNVGSGMVGAPACGDVMKLQ IKVNDEGIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIADELELPPV KIHCSILAEDAIKAAIADYKSKREAK" misc_feature complement(2681132..2681503) /gene="nifU" /locus_tag="STM2542" /note="FeS cluster assembly scaffold IscU; Region: iscU; TIGR01999" /db_xref="CDD:188192" misc_feature complement(order(2681192..2681197,2681201..2681206, 2681315..2681317,2681321..2681323,2681396..2681401, 2681483..2681488,2681495..2681503)) /gene="nifU" /locus_tag="STM2542" /note="trimerization site [polypeptide binding]; other site" /db_xref="CDD:143480" misc_feature complement(order(2681192..2681194,2681321..2681323, 2681399..2681401)) /gene="nifU" /locus_tag="STM2542" /note="active site" /db_xref="CDD:143480" regulatory complement(2681518..2681523) /regulatory_class="ribosome_binding_site" /gene="nifU" /locus_tag="STM2542" /note="putative RBS for nifU; RegulonDB:STMS1H002644" gene complement(2681537..2682767) /gene="nifS" /locus_tag="STM2543" /db_xref="GeneID:1254065" CDS complement(2681537..2682751) /gene="nifS" /locus_tag="STM2543" /note="similar to E. coli putative aminotransferase (AAC75583.1); Blastp hit to AAC75583.1 (412 aa), 97% identity in aa 9 - 412" /codon_start=1 /transl_table=11 /product="putative aminotransferase class-V" /protein_id="NP_461478.1" /db_xref="GeneID:1254065" /translation="MKLPIYLDYSATTPVDPRVAEKMMQFLTLDGTFGNPASRSHRFG WQAEEAVDIARNQIAELVGADPREIVFTSGATESDNLAIKGAANFYQKKGKHIITSKT EHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLNELEAAMRDDTILVSIMHVNNEIGVV QDIATIGEMCRARGIIYHVDATQSVGKLPIDLSQLKVDLMSFSGHKIYGPKGIGALYV RRKPRIRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAKEEMETEMARLRGLRNR LWNGIKDIEEVYLNGDLEQGAPNILNVSFNYVEGESLIMALKDLAVSSGSACTSASLE PSYVLRALGMNDELAHSSIRFSLGRFTTEEEIDYTIDLVRKSIGRLRDLSPLWEMYKQ GVDLNSIEWAHH" misc_feature complement(2681540..2682751) /gene="nifS" /locus_tag="STM2543" /note="IscS subfamily cysteine desulfurase; Region: PRK14012" /db_xref="CDD:184450" misc_feature complement(order(2682134..2682136,2682143..2682145, 2682203..2682205,2682212..2682214,2682296..2682298, 2682515..2682517,2682524..2682529)) /gene="nifS" /locus_tag="STM2543" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99746" misc_feature complement(2682134..2682136) /gene="nifS" /locus_tag="STM2543" /note="catalytic residue [active]" /db_xref="CDD:99746" regulatory complement(2682762..2682767) /regulatory_class="ribosome_binding_site" /gene="nifS" /locus_tag="STM2543" /note="putative RBS for nifS; RegulonDB:STMS1H002645" gene complement(2682932..2683441) /gene="yfhP" /locus_tag="STM2544" /db_xref="GeneID:1254066" CDS complement(2682932..2683426) /gene="yfhP" /locus_tag="STM2544" /note="believed to be involved in assembly of Fe-S clusters; similar to E. coli orf, hypothetical protein (AAC75584.1); Blastp hit to AAC75584.1 (162 aa), 96% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461479.1" /db_xref="GeneID:1254066" /translation="MRLTSKGRYAVTAMLDVALNSEAGPVPLADISERQGISLSYLEQ LFSRLRKNGLVSSVRGPGGGYLLGKDAGSIAVGEVISAVDESVDATRCQGKGGCQGGD KCLTHALWRDLSDRLTGFLNNITLGELVNNQEVLDVSGRQHTHDAPRASGRAQDAIDV KLRA" misc_feature complement(2682935..2683426) /gene="yfhP" /locus_tag="STM2544" /note="Fe-S cluster assembly transcriptional regulator IscR; Region: PRK10857" /db_xref="CDD:236777" regulatory complement(2683436..2683441) /regulatory_class="ribosome_binding_site" /gene="yfhP" /locus_tag="STM2544" /note="putative RBS for yfhP; RegulonDB:STMS1H002646" gene complement(2683586..2684330) /locus_tag="STM2545" /db_xref="GeneID:1254067" CDS complement(2683586..2684317) /locus_tag="STM2545" /note="similar to E. coli putative ATP synthase beta subunit (AAC75585.1); Blastp hit to AAC75585.1 (246 aa), 97% identity in aa 1 - 242" /codon_start=1 /transl_table=11 /product="putative rRNA methylase" /protein_id="NP_461480.1" /db_xref="GeneID:1254067" /translation="MLQNIRIVLVETSHTGNMGSVARAMKTMGLTNLWLVNPLVKPDS QAIALAAGASDVIGNAQIVDTLDEALAGCSLVVGTSARSRTLPWPMLDPRECGLKSVA EAANTPVALVFGRERVGLTNDELQKCHYHVAIAANPEYSSLNLAMAVQVIAYEVRMAW LATQENGDAADHEETPYPLVDDLERFYGHLEQTLLSTGFIRENHPGQVMNKLRRLFTR ARPESQELNILRGILASIEQQNKGK" misc_feature complement(2683589..2684317) /locus_tag="STM2545" /note="tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmJ; Provisional; Region: PRK15114" /db_xref="CDD:185069" regulatory complement(2684325..2684330) /regulatory_class="ribosome_binding_site" /locus_tag="STM2545" /note="putative RBS for STM2545; RegulonDB:STMS1H002647" gene 2684427..2685239 /gene="suhB" /locus_tag="STM2546" /db_xref="GeneID:1254068" regulatory 2684427..2684432 /regulatory_class="ribosome_binding_site" /gene="suhB" /locus_tag="STM2546" /note="putative RBS for suhB; RegulonDB:STMS1H002649" CDS 2684436..2685239 /gene="suhB" /locus_tag="STM2546" /note="similar to E. coli enhances synthesis of sigma32 in mutant; extragenic suppressor, may modulate RNAse III lethal action (AAC75586.1); Blastp hit to AAC75586.1 (267 aa), 97% identity in aa 1 - 267" /codon_start=1 /transl_table=11 /product="inositol monophosphatase" /protein_id="NP_461481.1" /db_xref="GeneID:1254068" /translation="MHPMLTIAVRAARKAGNVIAKNYETPDAVEASQKGSNDFVTNVD KAAEAVIIDTIRKSYPQHTIITEESGEHVGTDQDVQWVIDPLDGTTNFIKRLPHFAVS IAVRIKGRTEVAVVYDPMRNELFTATRGQGAQLNGYRLRGSTARDLDGTILATGFPFK AKQYATTYINIIGKLFTECADFRRTGSAALDLAYVAAGRVDGFFEIGLRPWDFAAGEL LVREAGGIVSDFTGGHNYMMTGNIVAGNPRVVKAMLANMRDELSDALKR" misc_feature 2684436..2685236 /gene="suhB" /locus_tag="STM2546" /note="inositol-1-monophosphatase; Region: PRK10757" /db_xref="CDD:236753" misc_feature order(2684535..2684537,2684547..2684549,2684565..2684567, 2684634..2684639,2684685..2684702,2685066..2685071) /gene="suhB" /locus_tag="STM2546" /note="active site" /db_xref="CDD:238817" misc_feature order(2684544..2684546,2684550..2684552,2684703..2684708, 2684712..2684729,2684883..2684891,2684895..2684897, 2684901..2684906,2684928..2684933,2684940..2684942, 2684949..2684954,2684961..2684963,2684973..2684993, 2685015..2685017,2685027..2685038) /gene="suhB" /locus_tag="STM2546" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238817" gene 2685372..2686262 /locus_tag="STM2547" /db_xref="GeneID:1254069" regulatory 2685372..2685377 /regulatory_class="ribosome_binding_site" /locus_tag="STM2547" /note="putative RBS for STM2547; RegulonDB:STMS1H002650" CDS 2685384..2686262 /locus_tag="STM2547" /note="similar to E. coli putative enzyme (3.4.-) (AAC75587.1); Blastp hit to AAC75587.1 (293 aa), 66% identity in aa 10 - 290" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_461482.1" /db_xref="GeneID:1254069" /translation="MTLQHTRRIVKSLFILFIIVVCIYLLPRVAINAFYYPDNKVYGP TPAEAESITFTAKDGTHLHGWFIPTAFGRPENAVATVIHVHGNAGNMSAHWPLVSWLP ERNVNLFMFDYRGFGESEGTPSQEGLLDDTKSAIDYVRHRADVNPERLVLLGQSLGGN NVLAAVGHCVGCANMRYADQAGIRAIILDSTFLSYSSIANQMIPGSGYLLDDRYSADR NIASVSPIPVLILHGTADHVIPWQDSEKLYALAREPKQKIFIPDGDHIDAFSGRYANL YRDAMIKFIQTALSAK" misc_feature 2685486..2686250 /locus_tag="STM2547" /note="Fermentation-respiration switch esterase FrsA, DUF1100 family [Signal transduction mechanisms]; Region: FrsA; COG1073" /db_xref="CDD:440691" gene 2686437..2687487 /gene="asrA" /locus_tag="STM2548" /db_xref="GeneID:1254070" regulatory 2686437..2686442 /regulatory_class="ribosome_binding_site" /gene="asrA" /locus_tag="STM2548" /note="putative RBS for asrA; RegulonDB:STMS1H002651" CDS 2686444..2687487 /gene="asrA" /locus_tag="STM2548" /note="anaerobic sulfite reductase subunit A (anaerobic sulfite reductaseiron-sulfur subunit). (SW:ASRA_SALTY)" /codon_start=1 /transl_table=11 /product="anaerobic sulfide reductase" /protein_id="NP_461483.1" /db_xref="GeneID:1254070" /translation="MAIKITPDEFSLLIQRLNKKWRVFAPSAEFRGGRFSDTDNIIYQ RISGWRDLIWHEKSHMSPNTIIAPITETLFYFDKDTIQIAETDTSPIIIFARACDINA MSRLDYMYLSNGNNSDYSYQLLREHIRFVLIECEESFENCFCVSMGTNKTDCYSAAMR FSDEGALVSIRDPFIEAAIQGLGQEADYTPSFVSENRETVVTPDSVCHDPQKIRDILT HHPLWDAYDSRCISCGRCTTGCPTCTCYSVFDVAYDENPQRGERRRQWASCMVPGFSD MAGGHGFREKPGERLRYRALHKVNDYKARNGIEHMCVGCGRCDDRCPQYIKFSLIINK MTAAVRQALAEEA" misc_feature 2686444..2687472 /gene="asrA" /locus_tag="STM2548" /note="sulfite reductase, subunit A; Region: sulfite_red_A; TIGR02910" /db_xref="CDD:131956" gene 2687483..2688309 /gene="asrB" /locus_tag="STM2549" /db_xref="GeneID:1254071" regulatory 2687483..2687488 /regulatory_class="ribosome_binding_site" /gene="asrB" /locus_tag="STM2549" /note="putative RBS for asrB; RegulonDB:STMS1H002652" CDS 2687491..2688309 /gene="asrB" /locus_tag="STM2549" /note="anaerobic sulfite reductase subunit B. (SW:ASRB_SALTY)" /codon_start=1 /transl_table=11 /product="anaerobic sulfide reductase" /protein_id="NP_461484.1" /db_xref="GeneID:1254071" /translation="MSHCSCHDKPQHSLLPAAYRILSITRHTPLEWNFRVAVDFPAHW GQFVEVSLPRVGEAPISVSDYGDGWIDLLIRNVGKVTSALFTLKEGDNVWLRGCYGNG YPVDTLRHKPLLVVAGGTGVAPVKGLMRYFVENPQEIGQLDMILGYKNRDCVLYKEEM ATWRGKHNLVLTLDEGEADDRYQIGRVTDRLADMTLSDIDTMQAIVVGPPIMITFTVK MLLQKGLKPEQIWVDYERRMACSVGKCGHCRMGEVYVCTDGPIFNYAVAQRFAD" misc_feature 2687524..2688306 /gene="asrB" /locus_tag="STM2549" /note="sulfite reductase, subunit B; Region: sulfite_red_B; TIGR02911" /db_xref="CDD:131957" gene 2688313..2689333 /gene="asrC" /locus_tag="STM2550" /db_xref="GeneID:1254072" regulatory 2688313..2688318 /regulatory_class="ribosome_binding_site" /gene="asrC" /locus_tag="STM2550" /note="putative RBS for asrC; RegulonDB:STMS1H002653" CDS 2688320..2689333 /gene="asrC" /locus_tag="STM2550" /note="anaerobic sulfite reductase subunit C. (SW:ASRC_SALTY)" /codon_start=1 /transl_table=11 /product="anaerobic sulfide reductase" /protein_id="NP_461485.1" /db_xref="GeneID:1254072" /translation="MSIDIDIIKARAKNEYRLSKVRGEAMISVRIPGGILPAHLLTVA RDIAETWGNGQIHLTTRQKLAMPGIRYEDIDNVNAALEPFLREIEIELCDVQVEDTKA GYLAIGGRNIVACQGNRICQKANTDTTGLSRRLEKLVYPSPYHLKTVIVGCPNDCAKA SMADLGIIGVAKMRFTADRCIGCGACVKACSHHAVGCLALKNGKAVKEESACIGCGEC VLACPTLAWQRKPDQLWQVRLGGRTSKKTPRVGKLFLNWVTEDVIKQVIVNLYEFEKE MLGGKPIYLHMGHLIDKGGYLRFKERVLRGVQLNPEAMVAERIYWAEDESVARMHLKP AGH" misc_feature 2688329..2689282 /gene="asrC" /locus_tag="STM2550" /note="sulfite reductase, subunit C; Region: sulfite_red_C; TIGR02912" /db_xref="CDD:131958" gene complement(2689334..2690325) /locus_tag="STM2551" /db_xref="GeneID:1254073" CDS complement(2689334..2690320) /locus_tag="STM2551" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461486.1" /db_xref="GeneID:1254073" /translation="MSVIFSQRTPGRRWLSLWPLALFLLLMLVGGLWMWQAWPQVMLK SALWQRDVNQQLSALLNAVATHPERAGGSLLLLSFMYGVLHALGPGHGKVVIATWLAT HPSKLKSSIVLTLAAALLQGLVAIGLVVGVLTVLQLPARQLHLSGFWLEKGSYALVGG LGILLCWRAIKRLRALLRKPVFIAFTPRHVHHEKCGCGHQHLPTQEQLHSGDDWRARF MIVLSMGMRPCSGAIMVLLFSKVIGVFSWGMASVLAMAAGTSLTITSLALLVHTFRAL AVKLSGNKAPALWRQVGWSTLALAGGGILLVAALVMWFSVPQPVGGLRPWRG" misc_feature complement(2689373..2690170) /locus_tag="STM2551" /note="ABC-type nickel/cobalt efflux system, permease component RcnA [Inorganic ion transport and metabolism]; Region: RcnA; COG2215" /db_xref="CDD:441817" gene complement(2690311..2690956) /locus_tag="STM2552" /db_xref="GeneID:1254074" CDS complement(2690311..2690949) /locus_tag="STM2552" /codon_start=1 /transl_table=11 /product="putative periplasmic or exported protein" /protein_id="NP_461487.1" /db_xref="GeneID:1254074" /translation="MKPVKRSALTLFLAVLSFVAAAHPHSFIRLQTQVVSENEQFVAL KMRWTMDALTSADLLYDAGNAAPGSEIWKKLAAEVMANVLGQHYFTEVWRNGAKVKFK NRPTEYGMTRDAHQAVLTFTLPLAEPQPLSGQTYTFSTFDPSYYVDMHYDQDSDITMP EPLREKCRIQVYTPAPGEETLRFAQSLDKEDAPPEDMDLGKQFAQTVTLQCQ" misc_feature complement(2690314..2690949) /locus_tag="STM2552" /note="ABC-type uncharacterized transport system, periplasmic component [General function prediction only]; Region: COG3683" /db_xref="CDD:442899" regulatory complement(2690320..2690325) /regulatory_class="ribosome_binding_site" /locus_tag="STM2552" /note="putative RBS for STM2551; RegulonDB:STMS1H002654" regulatory complement(2690951..2690956) /regulatory_class="ribosome_binding_site" /locus_tag="STM2552" /note="putative RBS for STM2552; RegulonDB:STMS1H002655" gene 2691059..2692352 /gene="csiE" /locus_tag="STM2553" /db_xref="GeneID:1254075" regulatory 2691059..2691064 /regulatory_class="ribosome_binding_site" /gene="csiE" /locus_tag="STM2553" /note="putative RBS for csiE; RegulonDB:STMS1H002656" CDS 2691075..2692352 /gene="csiE" /locus_tag="STM2553" /note="similar to E. coli orf, hypothetical protein (AAC75588.1); Blastp hit to AAC75588.1 (433 aa), 71% identity in aa 8 - 432" /codon_start=1 /transl_table=11 /product="stationary phase inducible protein" /protein_id="NP_461488.1" /db_xref="GeneID:1254075" /translation="MMPTIAPPSVLSAPQRRCQVLLTLFQPEPIATVEIFSALNGVDD DTAREDITETSLEIQRYHRLAITTCQNGCYRIEGTALDQRLCLLHWLRRGLRLCPTFV TQQFTPALKNALKQRGIARPLYDDINLHALINLCARRLQKPFEHRDVQFLRLFLQYCL LQHHAGITPEFNPVQQIWAQSCAEYPLAQEIGRHWQRHVMQAAPLNEALFMALLFSMI RLPDPIRDTHQRAQQLRLEVARLVLRFREKGNVRFSDEQGLNDQLYVHLAQALNRSLF TIGIDNTLPEEFNRLYPRLVRTTREALAGFEAEYGIHFSEEETGLVAVIFGAWLMQDN DLHERQIVLLADKNDALETHIEQQLRELTLLPLNIRRISLQAFQKEGCPRGVALIVTP YATPLPLFSPPLIHADRALTEHQQQQIRKILES" misc_feature 2691075..2692349 /gene="csiE" /locus_tag="STM2553" /note="stationary phase inducible protein CsiE; Provisional; Region: PRK11564" /db_xref="CDD:236932" gene complement(2692347..2693495) /gene="hcaT" /locus_tag="STM2554" /db_xref="GeneID:1254076" CDS complement(2692347..2693486) /gene="hcaT" /locus_tag="STM2554" /note="similar to E. coli MFS (major facilitator superfamily) transporter (AAC75589.1); Blastp hit to AAC75589.1 (379 aa), 88% identity in aa 1 - 376" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_461489.1" /db_xref="GeneID:1254076" /translation="MALHSTRWLALSYFTYFFSYGIFLPFWSVWLKGLGLTPETIGLL LGVGLVARFLGSLLIAPRVSDPSRLISALRVLALLTLVFALAFWAGTHVAWLMVVMVG FNLFFSPLVPLTDALANTWQKQITLDYGRVRLWGSIAFVIGSALTGKLVSLYDYQAIL ALLTLGVASMLLGMLLRPSVPPQGESRQQESAGWPAWRTLVAQSWRFLACVCLLQGAH AAYYGFSAIYWQGAGYSASAVGYLWSLGVVAEVIIFALSKKLFRRFSARDLLLLSAVC GVVRWGLMGWSTALPWLIVIQILHCGTFTVCHLAAMRYIAARQGSEVIRLQAVYSAVA MGGSIAIMTVFAGFLYQHLGGGVFWIMALVALPAIFLRPKVVAAS" misc_feature complement(2692350..2693486) /gene="hcaT" /locus_tag="STM2554" /note="3-phenylpropionate MFS transporter; Region: PRK11128" /db_xref="CDD:236856" misc_feature complement(order(2692458..2692460,2692467..2692472, 2692479..2692484,2692491..2692493,2692551..2692553, 2692563..2692565,2692575..2692580,2692725..2692727, 2692737..2692739,2692818..2692820,2692827..2692835, 2692842..2692847,2692854..2692856,2693067..2693069, 2693076..2693081,2693088..2693090,2693142..2693144, 2693151..2693159,2693163..2693168,2693319..2693321, 2693415..2693417,2693424..2693429,2693436..2693441)) /gene="hcaT" /locus_tag="STM2554" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340893" regulatory complement(2693490..2693495) /regulatory_class="ribosome_binding_site" /gene="hcaT" /locus_tag="STM2554" /note="putative RBS for hcaT; RegulonDB:STMS1H002657" gene complement(2693682..2695130) /gene="glyA" /locus_tag="STM2555" /db_xref="GeneID:1254077" CDS complement(2693682..2694935) /gene="glyA" /locus_tag="STM2555" /EC_number="2.1.2.1" /note="serine hydroxymethyltransferase. (SW:GLYA_SALTY)" /codon_start=1 /transl_table=11 /product="serine hydroxymethyltransferase" /protein_id="NP_461490.1" /db_xref="GeneID:1254077" /translation="MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVM QAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQAN FAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAK LAKEHKPKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVP HAHVVTTTTHKTLAGPRGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVAL KEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEAD AALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDN INDEATIERVKAKVLDICARFPVYA" misc_feature complement(2693685..2694920) /gene="glyA" /locus_tag="STM2555" /note="serine hydroxymethyltransferase; Reviewed; Region: glyA; PRK00011" /db_xref="CDD:234571" misc_feature complement(order(2694087..2694089,2694141..2694143, 2694519..2694524,2694627..2694629,2694648..2694650, 2694693..2694695,2694717..2694722,2694774..2694776, 2694828..2694830,2694843..2694845,2694870..2694875, 2694894..2694896,2694900..2694902)) /gene="glyA" /locus_tag="STM2555" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99733" misc_feature complement(order(2693847..2693849,2694231..2694233, 2694249..2694254,2694327..2694329,2694336..2694338, 2694411..2694413,2694558..2694560,2694639..2694644, 2694741..2694743,2694771..2694773,2694831..2694833)) /gene="glyA" /locus_tag="STM2555" /note="glycine-pyridoxal phosphate binding site [chemical binding]; other site" /db_xref="CDD:99733" misc_feature complement(order(2693847..2693849,2694249..2694251, 2694558..2694560,2694831..2694833)) /gene="glyA" /locus_tag="STM2555" /note="active site" /db_xref="CDD:99733" misc_feature complement(order(2693895..2693897,2694165..2694167, 2694555..2694557,2694561..2694563,2694573..2694575, 2694744..2694746,2694765..2694767)) /gene="glyA" /locus_tag="STM2555" /note="folate binding site [chemical binding]; other site" /db_xref="CDD:99733" regulatory complement(2694942..2694947) /regulatory_class="ribosome_binding_site" /gene="glyA" /locus_tag="STM2555" /note="putative RBS for glyA; RegulonDB:STMS1H002658" protein_bind complement(2695049..2695065) /gene="glyA" /locus_tag="STM2555" /note="putative binding site for PurR, RegulonDB: STMS1H000349" /bound_moiety="PurR" regulatory complement(2695104..2695112) /regulatory_class="minus_10_signal" /gene="glyA" /locus_tag="STM2555" /note="putative -10_signal for glyA; RegulonDB:STMLTH004554" regulatory complement(2695122..2695130) /regulatory_class="minus_35_signal" /gene="glyA" /locus_tag="STM2555" /note="putative -35_signal for glyA; RegulonDB:STMLTH004554" protein_bind complement(2695139..2695163) /note="putative binding site for MetR, RegulonDB: STMS1H000289" /bound_moiety="MetR" gene 2695248..2696450 /gene="hmpA" /locus_tag="STM2556" /db_xref="GeneID:1254078" regulatory 2695248..2695253 /regulatory_class="ribosome_binding_site" /gene="hmpA" /locus_tag="STM2556" /note="putative RBS for hmpA; RegulonDB:STMS1H002659" CDS 2695260..2696450 /gene="hmpA" /locus_tag="STM2556" /EC_number="1.5.1.34" /note="contains nitric oxide dioxygenase activity; flavohemoprotein; hemoglobin-like protein; flavohemoglobin)(dihydropteridine reductase. (SW:HMPA_SALTY)" /codon_start=1 /transl_table=11 /product="dihydropteridine reductase 2" /protein_id="NP_461491.1" /db_xref="GeneID:1254078" /translation="MLDAQTIATVKATIPLLVETGPKLTAHFYDRMFTHNPELKEIFN MSNQRNGDQREALFNAIAAYASNIENLPALLPAVEKIAQKHTSFQIKPEQYNIVGTHL LATLDEMFNPGQEVLDAWGKAYGVLANVFIHREAEIYHENASKDGGWEGTRPFRIVAK TPRSALITSFEFEPVDGGTVAEYRPGQYLGVWLKPEGFAHQEIRQYSLTRKPDGKGYR IAVKREDGGQVSNWLHHHASVGDGVHLAAPAGDFFMNVAADTPVSLISAGVGQTPMLA MLDTLAKEQHTAQVNWFHAAENGDVHAFADEVSELGRTLPRFTAHTWYREPTESDRAQ RLFDSEGLMDLSKLEAAISDPAMQFYLCGPVGFMQFAAKQLVSLGVNNENIHYECFGP HKVL" misc_feature 2695260..2696447 /gene="hmpA" /locus_tag="STM2556" /note="NO-inducible flavohemoprotein; Region: PRK13289" /db_xref="CDD:237337" gene 2696564..2698176 /gene="cadC" /locus_tag="STM2557" /db_xref="GeneID:1254079" regulatory 2696564..2696572 /regulatory_class="minus_35_signal" /gene="cadC" /locus_tag="STM2557" /note="putative -35_signal for cadC; RegulonDB:STMLTH004555" regulatory 2696590..2696598 /regulatory_class="minus_10_signal" /gene="cadC" /locus_tag="STM2557" /note="putative -10_signal for cadC; RegulonDB:STMLTH004555" regulatory 2696618..2696623 /regulatory_class="ribosome_binding_site" /gene="cadC" /locus_tag="STM2557" /note="putative RBS for cadC; RegulonDB:STMS1H002660" CDS 2696632..2698176 /gene="cadC" /locus_tag="STM2557" /note="OmpR family; similar to E. coli transcriptional activator of cad operon (AAC77094.1); Blastp hit to AAC77094.1 (512 aa), 58% identity in aa 1 - 512" /codon_start=1 /transl_table=11 /product="transcriptional activator of cad operon" /protein_id="NP_461492.1" /db_xref="GeneID:1254079" /translation="MQQPVVRIGEWLVTPSVNQISRQGRQITLEPRLIDLLMYFAHHP DEVLSRDNIIDHVWMRTIVTNHVVTQSISELRKSLRDGGDSNAEYIVTVPKRGYKLTA PVIWCEENSDEIDNSSTSPPPPIAATNAEPTEGVTAATPVPPASLQTPTKKAKKPRIA AFWTWVMFLLSLATLVVFIVMSVVDHNAAVTKTRLLLNPRDIDVRFEGGNSCNNWVSQ ESYAIGLGGLITDLLNTYSTFMVHDKTNYRVNEPSSSGKTLTIQFVNQRHYRAQQCFM SVVLIDNADGSTMLDKRYFVTNTNQLSIQDDLFNSLSFVLTQPWPNRMREQLALFRTP QNTALMRFYEARQLILSGDAQALGKASDILNGIIKETPDFNYAYEYKVLVDVLRQSQQ PFDKEQVAALNEEFKKIDQIPGVEKTSVYYKIKTVDLLGKGDIDAAYEEINKSIELEM SWFNYVLLGKVYEMKGENRLAADAYLTAFNLRPGENTLYWIENGVFQTSVQKIVPYLN SFLAED" misc_feature 2696632..2698173 /gene="cadC" /locus_tag="STM2557" /note="DNA-binding transcriptional activator CadC; Provisional; Region: PRK10153" /db_xref="CDD:236658" gene 2698371..2699868 /gene="cadB" /locus_tag="STM2558" /db_xref="GeneID:1254080" regulatory 2698371..2698379 /regulatory_class="minus_35_signal" /gene="cadB" /locus_tag="STM2558" /note="putative -35_signal for cadB; RegulonDB:STMLTH004556" regulatory 2698399..2698407 /regulatory_class="minus_10_signal" /gene="cadB" /locus_tag="STM2558" /note="putative -10_signal for cadB; RegulonDB:STMLTH004556" regulatory 2698523..2698528 /regulatory_class="ribosome_binding_site" /gene="cadB" /locus_tag="STM2558" /note="putative RBS for cadB; RegulonDB:STMS1H002661" CDS 2698537..2699868 /gene="cadB" /locus_tag="STM2558" /note="similar to E. coli transport of lysine/cadaverine (AAC77093.1); Blastp hit to AAC77093.1 (444 aa), 90% identity in aa 1 - 440" /codon_start=1 /transl_table=11 /product="APC family lysine/cadaverine transport protein" /protein_id="NP_461493.1" /db_xref="GeneID:1254080" /translation="MSSVKKIGLFACTGVVAGNMMGSGIALLPANLASIGGIAIWGWV ISIIGAMSLAYVYARLATKNPQQGGPIAYAGEISPAFGFQTGVLYYHANWIGNLAIGI TAVSYLSTFFPALNNPIPAGIACIAIVWLFTFINMLGGAWVSRLTTIGLFLVLIPVVL TAVAGWHWFDIATYHANWNTSTTTDSHAIVKSILLCLWAFVGVESAAVSTGMVKNPKR TVPLATMLGTALAGIIYIAATQVIAGMFPASVMASSGAPFAISTSTILGGWAAPLVSA FTAFACLTSLGSWMMLVGQAGVRAANDGNFPKIYGEMDKNGIPKKGLLLAAVKMTALM ILITIMNSSGGKASDLFGELTGIAVLLTMLPYFYSCVDLIRFEGFNIRNSVSLICSVL GCAFCFIALMGASSFELSGTFIVSLIILMFYGRKMHQRQNNDSDNNTAEAL" misc_feature 2698537..2699841 /gene="cadB" /locus_tag="STM2558" /note="cadaverine/lysine antiporter; Region: cadB; PRK10435" /db_xref="CDD:182458" gene 2699938..2702095 /gene="cadA" /locus_tag="STM2559" /db_xref="GeneID:1254081" regulatory 2699938..2699943 /regulatory_class="ribosome_binding_site" /gene="cadA" /locus_tag="STM2559" /note="putative RBS for cadA; RegulonDB:STMS1H002662" CDS 2699951..2702095 /gene="cadA" /locus_tag="STM2559" /EC_number="4.1.1.18" /note="lysine decarboxylase, inducible. (SW:DCLY_SALTY)" /codon_start=1 /transl_table=11 /product="lysine decarboxylase 1" /protein_id="NP_461494.1" /db_xref="GeneID:1254081" /translation="MNVIAIMNHMGVYFKEEPIRELHRALEGLNFRIVYPNDREDLLK LIENNSRLCGVIFDWDKYNLELCEEISKLNEYMPLYAFANSYSTLDVSLNDLRMQVRF FEYALGAAADIAAKIRQNTDEYIDNILPPLTKALFKYVREGKYTFCTPGHMGGTAFQK SPVGSIFYDFFGPNTMKSDISISVSELGSLLDHSGPHKEAEEYIARVFNAERSYMVTN GTSTANKIVGMYSAPAGSTVLIDRNCHKSLTHLMMMSDITPIYFRPTRNAYGILGGIP QSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDYIKKTLDVKSIHFDSAWV PYTNFSPIYQGKCGMSGDRVEGKIIYETQSTHKLLAAFSQASMIHVKGDINEETFNEA YMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLKSESDGWF FDVWQPEHIDGAECWPLRSDSAWHGFKNIDNEHMYLDPIKVTILTPGMKKDGTMDEFG IPASLVAKYLDERGIIVEKTGPYNLLFLFSIGIDKTKALSLLRALTEFKRAFDLNLRV KNILPALYREAPEFYENMRIQELAQNIHKLVEHHNLPDLMYRAFEVLPKMVMTPYTAF QKELHGETEEVYLEEMVGRVNANMILPYPPGVPLVMPGEMITEESRPVLEFLQMLCEI GAHYPGFETDIHGAYRQADGRYTVKVLKENTK" misc_feature 2699951..2702092 /gene="cadA" /locus_tag="STM2559" /note="lysine decarboxylase; Region: PRK15400" /db_xref="CDD:185298" gene 2702140..2703611 /gene="yjdL" /locus_tag="STM2560" /db_xref="GeneID:1254082" regulatory 2702140..2702145 /regulatory_class="ribosome_binding_site" /gene="yjdL" /locus_tag="STM2560" /note="putative RBS for yjdL; RegulonDB:STMS1H002663" CDS 2702151..2703611 /gene="yjdL" /locus_tag="STM2560" /note="similar to E. coli putative peptide transporter (AAC77091.1); Blastp hit to AAC77091.1 (485 aa), 80% identity in aa 1 - 484" /codon_start=1 /transl_table=11 /product="putative POT family, di-/tripeptide transport protein" /protein_id="NP_461495.1" /db_xref="GeneID:1254082" /translation="MKTPSQPRAIFYIVAIQIWEYFSFYGMRALLILYLTHQLGFNDS HAINLFSAYASLVYVTPILGGWLADRLLGNRVAVITGALLMTLGHVVLGLESDSTLSL YAALAIIICGYGLFKSNISCLLGELYAPDDNRRDGGFSLLYAAGNIGSIAAPIACGLA AQWYGWHVGFALAGVGMFIGLLIFLSGHRHFQQTRGVNRPALRAVKFALPTWGWLVLM LCIAPVFFTLLLENNWSGYVLAIVCVFAAQLIARIMVKFPEHRRALWQIVLLMITGTL FWVLAQQGGSSISLFIDRFVNRHWLNMTVPTALFQSVNAIAVMAAGVVLAWLSSPKES ARSVLRVWLKFAVGLVLMGGGFMLLALNAHQARLDGQASMGMMIAGLALMGFAELFID PVAMAQITRLNLPGVTGVLTGIYMLATGAVANWLAGVVAQQTTESQISDTAVAAYGHF FSQMGEWTLSCVALIVAIVGLRWVCTRTTSALPQGD" misc_feature 2702154..2703554 /gene="yjdL" /locus_tag="STM2560" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature order(2702211..2702213,2702223..2702225,2702499..2702501, 2702577..2702579,2702586..2702591,2702598..2702600, 2702991..2702993,2703090..2703095,2703102..2703104, 2703312..2703314) /gene="yjdL" /locus_tag="STM2560" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340904" gene complement(2703660..2704089) /gene="glnB" /locus_tag="STM2561" /db_xref="GeneID:1254083" CDS complement(2703660..2703998) /gene="glnB" /locus_tag="STM2561" /note="similar to E. coli regulatory protein P-II for glutamine synthetase (AAC75606.1); Blastp hit to AAC75606.1 (112 aa), 100% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="regulatory protein (P-II) for nitrogen assimilation by glutamine synthetase (ATase)" /protein_id="NP_461496.1" /db_xref="GeneID:1254083" /translation="MKKIDAIIKPFKLDDVREALAEVGITGMTVTEVKGFGRQKGHTE LYRGAEYMVDFLPKVKIEIVVPDDIVDTCVDTIIRTAQTGKIGDGKIFVFDVARVIRI RTGEEDDAAI" misc_feature complement(2703663..2703998) /gene="glnB" /locus_tag="STM2561" /note="Nitrogen regulatory protein PII [Signal transduction mechanisms, Amino acid transport and metabolism]; Region: GlnK; COG0347" /db_xref="CDD:440116" regulatory complement(2704003..2704008) /regulatory_class="ribosome_binding_site" /gene="glnB" /locus_tag="STM2561" /note="putative RBS for glnB; RegulonDB:STMS1H002664" protein_bind complement(2704037..2704054) /gene="glnB" /locus_tag="STM2561" /note="putative binding site for PurR, RegulonDB: STMS1H000356" /bound_moiety="PurR" regulatory complement(2704065..2704073) /regulatory_class="minus_10_signal" /gene="glnB" /locus_tag="STM2561" /note="putative -10_signal for glnB; RegulonDB:STMLTH004557" gene complement(2704075..2705423) /gene="yfhA" /locus_tag="STM2562" /db_xref="GeneID:1254084" CDS complement(2704075..2705412) /gene="yfhA" /locus_tag="STM2562" /note="EBP family; similar to E. coli putative 2-component transcriptional regulator (AAC75607.1); Blastp hit to AAC75607.1 (444 aa), 95% identity in aa 1 - 444" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator of two-component regulator protein" /protein_id="NP_461497.1" /db_xref="GeneID:1254084" /translation="MISRKPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEGLR VLHREKVDLVISDLRMDEMDGMQLFTEIQKVQPGMPVIILTAHGSIPDAVAATQKGVF SFLTKPIDRDALYKAIDEALEQSAPATDDSWRNAIVTRSPLMLRLLEQARMVAQSDVS VLINGQSGTGKEIFAQAIHNASPRSNKPFVAINCGALPEQLLESELFGHARGAFTGAV SNREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISA THRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQSAQRHKPFV RAFSTDAMKRLMTASWPGNVRQLVNVIEQCVALTSSPVISDALVEQALEGENTALPTF AEARNQFELNYLRKLLQITKGNVTHAARMAGRNRTEFYKLLSRHELDANDFKE" misc_feature complement(2704078..2705406) /gene="yfhA" /locus_tag="STM2562" /note="response regulator GlrR; Provisional; Region: PRK15115" /db_xref="CDD:185070" regulatory complement(2704081..2704089) /regulatory_class="minus_35_signal" /gene="glnB" /locus_tag="STM2561" /note="putative -35_signal for glnB; RegulonDB:STMLTH004557" gene complement(2705409..2706173) /gene="yfhG" /locus_tag="STM2563" /db_xref="GeneID:1254085" CDS complement(2705409..2706173) /gene="yfhG" /locus_tag="STM2563" /note="EBP family; similar to E. coli putative alpha helix protein (AAC75608.1); Blastp hit to AAC75608.1 (237 aa), 63% identity in aa 1 - 234" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator of two-component regulator protein (EBP familiiy)" /protein_id="NP_461498.1" /db_xref="GeneID:1254085" /translation="MNLSLVRMSHVFVQTIKRCLLRWGIPVGISCLALTACVPHASQQ LPGSAAQDTLPHYQLADYLPTACADIWSLRGQAVETNPLYWLRTIDCADRLMPVQSRA EARALTDDNWQNAFRRGILLADAKITPPERRAIVTRLEALSAQIPAQVRPVYQIWHDG QALQLALSAERQRYSKLQQMSDSELDALRQQQQALQTQLDLTTRKLESLTDIERQLST RKPAGNYNADTPHTNDKPATSEDGAAPSPSQDEVTP" misc_feature complement(2705412..2706152) /gene="yfhG" /locus_tag="STM2563" /note="two-component system QseEF-associated lipoprotein QseG; Region: PRK10722" /db_xref="CDD:236745" regulatory complement(2705418..2705423) /regulatory_class="ribosome_binding_site" /gene="yfhG" /locus_tag="STM2563" /note="putative RBS for yfhA; RegulonDB:STMS1H002665" gene complement(2706175..2707617) /gene="yfhK" /locus_tag="STM2564" /db_xref="GeneID:1254086" CDS complement(2706175..2707617) /gene="yfhK" /locus_tag="STM2564" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC75609.1); Blastp hit to AAC75609.1 (496 aa), 87% identity in aa 19 - 496" /codon_start=1 /transl_table=11 /product="putative sensory kinase in regulatory system" /protein_id="NP_461499.1" /db_xref="GeneID:1254086" /translation="MSDTLKRWSVFPRSLRQLVMLAFLLILLPLLVLAWQAWQSLNAL SDQAAVTNRSTLIDARRSEAMTNVALEMERSYRQYCVLDDPTLAKVYQSQRKRYSDML DAHAGVLPDDKLYQALRQDLNALAQLQCKDSGPEAAAAARLEAFANANTEMVQATRTV VYSRGQQLQQEIAERGQFFGWQALVLFLVSLAMVLLFTRMIIGPVKGIERMINRLGEG RSLGNTVTFTGPRELRSVGQRIIWLSERLAWLESQRHQFLRHLSHELKTPLASMREGT ELLADQVVGPLTPEQKEVVDILDDSSRNLQKLIEQLLDYNRKLVDSATELEAVDIAPL VDMVVSAHSLPARAKMMHTDVDLEAERCIAEPMLLMSVLDNLYSNAVHYGAESGNICI RSRSQGSTVYIDVVNSGEPIPQTEREMIFEPFFQGSHQRKGAVKGSGLGLSIARDCIR RMQGEIQLVDDNAQEVCFRISLPLPASDKH" misc_feature complement(2706187..2707608) /gene="yfhK" /locus_tag="STM2564" /note="Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]; Region: COG4251" /db_xref="CDD:443393" misc_feature complement(2706187..2706885) /gene="yfhK" /locus_tag="STM2564" /note="K+-sensing histidine kinase KdpD [Signal transduction mechanisms]; Region: KdpD; COG2205" /db_xref="CDD:441807" gene complement(2708255..2712297) /gene="purG" /locus_tag="STM2565" /db_xref="GeneID:1254087" CDS complement(2708255..2712142) /gene="purG" /locus_tag="STM2565" /EC_number="6.3.5.3" /note="phosphoribosylformylglycinamidine synthase. (SW:PURL_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoribosylformylglycinamidine synthetase" /protein_id="NP_461500.1" /db_xref="GeneID:1254087" /translation="MMEILRGSPALSAFRINKLLARFQAANLQVHNIYAEYVHFADLN APLNDSEQAQLTRLLQYGPALSSHTPAGKLLLVTPRPGTISPWSSKATDIAHNCGLQQ VDRLERGVAYYIEASTLTAEQWRQVAAELHDRMMETVFSSLTDAEKLFIHHQPAPVSS VDLLGEGRQALIDANLRLGLALAEDEIDYLQEAFTKLGRNPNDIELYMFAQANSEHCR HKIFNADWIIDGKPQPKSLFKMIKNTFETTPDYVLSAYKDNAAVMEGSAVGRYFADHN TGRYDFHQEPAHILMKVETHNHPTAISPWPGAATGSGGEIRDEGATGRGAKPKAGLVG FSVSNLRIPGFEQPWEEDFGKPERIVTALDIMTEGPLGGAAFNNEFGRPALTGYFRTY EEKVNSHNGEELRGYHKPIMLAGGIGNIRADHVQKGEIVVGAKLIVLGGPAMNIGLGG GAASSMASGQSDADLDFASVQRDNPEMERRCQEVIDRCWQLGDANPILFIHDVGAGGL SNAMPELVSDGGRGGKFELRDILSDEPGMSPLEIWCNESQERYVLAVAADQLPLFDEL CKRERAPYAVIGDATEEQHLSLHDNHFDNQPIDLPLDVLLGKTPKMTRDVQTLKAKGD ALNRADITIADAVKRVLHLPTVAEKTFLVTIGDRTVTGMVARDQMVGPWQVPVADCAV TTASLDSYYGEAMSIGERAPVALLDFAASARLAVGEALTNIAATQIGDIKRIKLSANW MAAAGHPGEDAGLYDAVKAVGEELCPQLGLTIPVGKDSMSMKTRWQEGNEQREMTSPL SLVISAFARVEDVRHTLTPQLSTEDNALLLIDLGKGHNALGATALAQVYRQLGDKPAD VRDVAQLKGFYDAMQALVAARKLLAWHDRSDGGLLVTLAEMAFAGHCGVQVDIAALGD DHLAALFNEELGGVIQVRAEDRDAVEALLAQYGLADCVHYLGQALAGDRFVITANDQT VFSESRTTLRVWWAETTWQMQRLRDNPQCADQEHEAKANDTDPGLNVKLSFDINEDIA APYIATGARPKVAVLREQGVNSHVEMAAAFHRAGFDAIDVHMSDLLGGRIGLGNFHAL VACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRE LIPGSELWPRFVRNHSDRFEARFSLVEVTQSPSLLLQGMVGSQMPIAVSHGEGRVEVR DDAHLAALESKGLVALRYVDNFGKVTETYPANPNGSPNGITAVTTENGRVTIMMPHPE RVFRTVANSWHPENWGEDSPWMRIFRNARKQLG" misc_feature complement(2708258..2712139) /gene="purG" /locus_tag="STM2565" /note="phosphoribosylformylglycinamidine synthase; Provisional; Region: PRK05297" /db_xref="CDD:235394" regulatory complement(2712149..2712154) /regulatory_class="ribosome_binding_site" /gene="purG" /locus_tag="STM2565" /note="putative RBS for purG; RegulonDB:STMS1H002666" gene 2712164..2712397 /locus_tag="STM2566" /db_xref="GeneID:1254088" CDS 2712164..2712397 /locus_tag="STM2566" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461501.1" /db_xref="GeneID:1254088" /translation="MVCARGETAVIIKNLTRRRNRLRRNKITAFSCHTVRLSLRISCQ LAHCYAKCRSLMTYLLQQNIFFSPRQRTIQRIN" protein_bind complement(2712213..2712231) /gene="purG" /locus_tag="STM2565" /note="putative binding site for PurR, RegulonDB: STMS1H000344" /bound_moiety="PurR" regulatory complement(2712270..2712278) /regulatory_class="minus_10_signal" /gene="purG" /locus_tag="STM2565" /note="putative -10_signal for purG; RegulonDB:STMLTH004558" regulatory complement(2712289..2712297) /regulatory_class="minus_35_signal" /gene="purG" /locus_tag="STM2565" /note="putative -35_signal for purG; RegulonDB:STMLTH004558" gene 2712385..2713942 /gene="yfhD" /locus_tag="STM2567" /db_xref="GeneID:1254089" regulatory 2712385..2712390 /regulatory_class="ribosome_binding_site" /locus_tag="STM2566" /note="putative RBS for yfhD; RegulonDB:STMS1H002667" CDS 2712398..2713942 /gene="yfhD" /locus_tag="STM2567" /note="similar to E. coli putative periplasmic binding transport protein (AAC75611.1); Blastp hit to AAC75611.1 (472 aa), 85% identity in aa 1 - 470" /codon_start=1 /transl_table=11 /product="putative periplasmic amino acid binding protein" /protein_id="NP_461502.1" /db_xref="GeneID:1254089" /translation="MKKLKINYLFIGILTLLLAAALWPSIPWFGKTENHIAAIQARGV LRVSTIDSPLTYSVINGKKYGLDYELAQQFANYLGVKLKVTVRQNISQLFDDLDNGNA DLLAAGLVYDSARVKNYQPGPMYYSVSQQLVYRVGQYRPRSLATVNENQLTIAPGHVV VNDLQRLKETKFPDLSWKVDDKKGSTTLLEEVISGKLDYTIADSVAISLFQRVHPELA VALDVTDEQPVTWFSRLDDDNTLSAALLDFFNSINEDGSLARIEEKYLGHGDDFDYVD TRSFLRAVDNVLPELEPLFKKYAKEIDWRLLAAISYQESHWDPLATSPTGVRGLMMLT KNTAQSLGLTDRTDAEQSISGGARYLEDMMAKVPETVPEDERIWFALAAYNMGYAHML DARSLTVKTKGNPDSWTDVKQRLPLLSQKPYYSKLTYGYARGHEAYAYVENIRKYQIS LVGYLQEKEKQEAEAMKLAQDYPAVSPEELNKAPFPFLSFLSQSSGYLTHSPSLLFTP QKKEEK" misc_feature 2712398..2713843 /gene="yfhD" /locus_tag="STM2567" /note="membrane-bound lytic murein transglycosylase MltF; Region: PRK10859" /db_xref="CDD:236778" gene complement(2713993..2714544) /gene="yfhC" /locus_tag="STM2568" /db_xref="GeneID:1254090" CDS complement(2713993..2714544) /gene="yfhC" /locus_tag="STM2568" /note="similar to E. coli putative deaminase (AAC75612.1); Blastp hit to AAC75612.1 (178 aa), 89% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="putative cytosine/adenosine deaminase" /protein_id="NP_461503.1" /db_xref="GeneID:1254090" /translation="MPPAFITGVTSLSDVELDHEYWMRHALTLAKRAWDEREVPVGAV LVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDTTLYVTLEPCVMCA GAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHPGMNHRVEIIEGVLRDECATLLSDFF RMRRQEIKALKKADRAEGAGPAV" misc_feature complement(2714011..2714526) /gene="yfhC" /locus_tag="STM2568" /note="tRNA-specific adenosine deaminase; Provisional; Region: PRK10860" /db_xref="CDD:182786" misc_feature complement(order(2714242..2714244,2714251..2714253, 2714335..2714343,2714374..2714376,2714422..2714424)) /gene="yfhC" /locus_tag="STM2568" /note="nucleoside/Zn binding site [active]" /db_xref="CDD:238612" misc_feature complement(order(2714221..2714226,2714233..2714238, 2714245..2714250,2714320..2714322,2714332..2714334, 2714347..2714349)) /gene="yfhC" /locus_tag="STM2568" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238612" misc_feature complement(order(2714242..2714244,2714251..2714256, 2714335..2714343)) /gene="yfhC" /locus_tag="STM2568" /note="catalytic motif [active]" /db_xref="CDD:238612" gene complement(2714569..2715216) /gene="yfhB" /locus_tag="STM2569" /db_xref="GeneID:1254091" CDS complement(2714569..2715204) /gene="yfhB" /locus_tag="STM2569" /note="similar to E. coli orf, hypothetical protein (AAC75613.1); Blastp hit to AAC75613.1 (190 aa), 91% identity in aa 1 - 190" /codon_start=1 /transl_table=11 /product="putatative phosphoserine phosphatase" /protein_id="NP_461504.1" /db_xref="GeneID:1254091" /translation="MVSHERRVVFFDLDGTLHQQDMFGSFLRYLLRRQPLNALLVLPL LPIIGIGLLVKGRAARWPMSLLLWGCTFGHSETRLQAHQADFVRWFRANVTAFPVVQE RLTTYLLSSDADIWLITGSPQSLVEQVYFDTPWLPRVNLIASQMARRYGGWVLTVRCL GHEKVAQLERKIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPHGELQQLE" misc_feature complement(2714572..2715198) /gene="yfhB" /locus_tag="STM2569" /note="The haloacid dehalogenase (HAD) superfamily includes carbon and phosphorus hydrolases such as 2-haloalkonoate dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, among others. These...; Region: Haloacid Dehalogenase-like Hydrolases; cl21460" /db_xref="CDD:473868" misc_feature complement(order(2714641..2714646,2714653..2714658, 2714713..2714715,2714845..2714850,2715157..2715171)) /gene="yfhB" /locus_tag="STM2569" /note="active site" /db_xref="CDD:319763" gene complement(2715208..2716578) /locus_tag="STM2570" /db_xref="GeneID:1254092" CDS complement(2715208..2716569) /locus_tag="STM2570" /note="similar to E. coli putative PTS enzyme II (AAC75482.1); Blastp hit to AAC75482.1 (474 aa), 38% identity in aa 6 - 467" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system IIB components" /protein_id="NP_461505.1" /db_xref="GeneID:1254092" /translation="MDKTAALASDILRGIGGEQNILRLENCMTRVRVEVQDDSQLDIP RLKALPGVSGYVKQGEQHQLIVGPGKAAQVVDAMRVQIAAGGVKPDDAMARTKSEAKA KYKAPMSDALRKLANVFIPLIPAFIASGLITGIINILKRPDIVGDVAVHYPNLLGLMG IFGSAVFAIMNILVGVNTAKVFGGSQALGGVMAGILSSPQLAQITLFGEVLQPGRGGV IAVLLVVALMCWIERQFRKLLPGSLELILNPLLTTVITGAVAIVALQPLGGWISDAIA HGASWAIDRGGFLVGAVLAGTFLPLVLTGLHQGLVPIHVELVQAHGYNALFPILAMAG VGQIGAAIAVLMKTRNARLKKVIKGALPVGLLGIGEPLIFGVTLPLGKPFIGACLGGA VGGALISYWKVATVITFGISGLPLALTIVAGKVLFYLLGYLIAVIAGFIFTWLLGFND PEE" misc_feature complement(2715229..2716560) /locus_tag="STM2570" /note="PTS system N-acetylmuramic acid transporter subunits EIIBC; Reviewed; Region: murP; PRK09586" /db_xref="CDD:181971" regulatory complement(2715211..2715216) /regulatory_class="ribosome_binding_site" /gene="yfhB" /locus_tag="STM2569" /note="putative RBS for yfhB; RegulonDB:STMS1H002668" regulatory complement(2716573..2716578) /regulatory_class="ribosome_binding_site" /locus_tag="STM2570" /note="putative RBS for STM2570; RegulonDB:STMS1H002669" gene complement(2716580..2717484) /locus_tag="STM2571" /db_xref="GeneID:1254093" CDS complement(2716580..2717473) /locus_tag="STM2571" /note="similar to E. coli putative regulator (AAC75481.1); Blastp hit to AAC75481.1 (298 aa), 54% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="putative aminotransferase" /protein_id="NP_461506.1" /db_xref="GeneID:1254093" /translation="MNLGTLVSETRNPQTMDLDALPTPELVKRFNEQDTLVAEAVKAT LPDVARAVDAAAAALKSGGRIIYMGAGTSGRLGVLDASECPPTFGVPHGLVVGLIAGG PGALLKAVEGAEDSQQAGEDDLVALNLQEQDLVVGLAASGRTPYVIGGLRYARQSGCT TVAVSCNPDSPIAREANIAISPVVGPEALTGSTRLKSGTAQKMVLNMISTGAMVKFGK VYQNLMVDMKATNVKLVDRACRMVVEATGIGREEAEALLKQTDFEVKPAILMALTGLD AAAAREKLAAHQGFLRAALEH" misc_feature complement(2716583..2717473) /locus_tag="STM2571" /note="N-acetylmuramic acid-6-phosphate etherase; Reviewed; Region: murQ; PRK05441" /db_xref="CDD:235467" regulatory complement(2717479..2717484) /regulatory_class="ribosome_binding_site" /locus_tag="STM2571" /note="putative RBS for STM2571; RegulonDB:STMS1H002670" gene 2717577..2718437 /gene="yfhH" /locus_tag="STM2572" /db_xref="GeneID:1254094" regulatory 2717577..2717582 /regulatory_class="ribosome_binding_site" /gene="yfhH" /locus_tag="STM2572" /note="putative RBS for yfhH; RegulonDB:STMS1H002671" CDS 2717589..2718437 /gene="yfhH" /locus_tag="STM2572" /note="membrane; similar to E. coli orf, hypothetical protein (AAC75614.1); Blastp hit to AAC75614.1 (306 aa), 83% identity in aa 25 - 306" /codon_start=1 /transl_table=11 /product="putative ABC superfamily transport protein" /protein_id="NP_461507.1" /db_xref="GeneID:1254094" /translation="MNCLIRIRQRYPDLAQSDRKLADYLLAQPDTARHLSSQQLAAEA GVSQSSVVKFAQKLGFKGFPALKLALSEALASNPNPHSVPVHNQIRGDDPMRLVGEKL IKENVAAMHATLDVNSEEKLLESVTMLRHARRIVITGIGASGLVAQNFAWKLLKIGIN AVVERDMHALLATVQALAPEDLLLAISYSGERRELNLAADETLRAGAKILAITGFSPN ALQQRATRCLYTIAEEQATRSAAISSTHAQMMLTDLLFMALVQQDLERAPERIRHSEA LVKKLV" misc_feature 2717601..2718434 /gene="yfhH" /locus_tag="STM2572" /note="MurR/RpiR family transcriptional regulator; Region: PRK11557" /db_xref="CDD:183195" gene complement(2718476..2719400) /locus_tag="STM2573" /db_xref="GeneID:1254095" CDS complement(2718476..2719393) /locus_tag="STM2573" /EC_number="1.1.1.169" /note="similar to E. coli involved in thiamin biosynthesis, alternative pyrimidine biosynthesis (AAC73528.1); Blastp hit to AAC73528.1 (303 aa), 26% identity in aa 1 - 291" /codon_start=1 /transl_table=11 /product="putative ketopantoate reductase" /protein_id="NP_461508.1" /db_xref="GeneID:1254095" /translation="MKIAIAGAGAMGCRFGYMLLEAGHDVTLIDGWQEHVDAIRSKGL FVETETTQKYYPIPAMLADESQGEFELVILFTKAMQLDSMLQRIKPLLPAAKVVMILS NGLGNIETLEKYVDRQKIYAGVTLWSSELEGAGHIMATGTGTIELQPIASQDSAQEAK VIATLNSAGLNAEISPDVLLSIWKKAAFNSVMNTYCALLDCNVGGFGQRPGALDLAQA VVDEFVLVAASQNIPLTEQMVMNTVKKVFDPRESGHHYPSMHQDLHKGRLTEIDYLNG AIARIGAQNNIAVPVNKLLTQLIHAKEAQ" misc_feature complement(2718479..2719393) /locus_tag="STM2573" /note="oxidoreductase; Region: PRK12921" /db_xref="CDD:183829" regulatory complement(2719395..2719400) /regulatory_class="ribosome_binding_site" /locus_tag="STM2573" /note="putative RBS for STM2573; RegulonDB:STMS1H002672" gene complement(2719415..2720622) /locus_tag="STM2574" /db_xref="GeneID:1254096" CDS complement(2719415..2720611) /locus_tag="STM2574" /note="similar to E. coli putative resistance protein (AAC76571.1); Blastp hit to AAC76571.1 (402 aa), 28% identity in aa 10 - 399" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_461509.1" /db_xref="GeneID:1254096" /translation="MSASINRWGMLAAHVCINFVLGGVYAFSYFKTPLMAQYHWDPAT LALAFSINMGIIPLPMIWGGRMIDNGKGKQAIVIGGILFSLGFILSGFVDNLPMLFLT YGVIAGLGSGLAFTGNLNNILKFFPDRRGLASGIVLAGVGVGTLLCTRLAEYFMAQTH DVSRALLYLGIVYLVVIFIVQFFIRSAPAKDSGGIKASPLDKDYRHMLKDLRFWLLFM ILALGVFSGMVISSSSAQIGMTQYGLLSGALVVSLVSIFNSIGRLFWGGLTDKLGGYN TLVIVYLFTCVCMLLLLFFNGNTSVFYFSALGVGFAYAGILVIFPGLTSQNFGMRNQG LNYGFMYFGFAVGAVIAPYVTSAIAKYTGSYNTVFILTTVLLLIGVVLTLITKKYVAT VLAKIH" misc_feature complement(2719457..2720596) /locus_tag="STM2574" /note="Oxalate:formate antiporter (OFA) and similar proteins of the Major Facilitator Superfamily of transporters; Region: MFS_OFA_like; cd17353" /db_xref="CDD:340911" misc_feature complement(order(2719568..2719570,2719577..2719582, 2719589..2719594,2719601..2719603,2719649..2719651, 2719661..2719663,2719673..2719678,2719826..2719828, 2719838..2719840,2719916..2719918,2719925..2719933, 2719940..2719945,2719952..2719954,2720177..2720179, 2720186..2720191,2720198..2720200,2720255..2720257, 2720264..2720272,2720276..2720281,2720432..2720434, 2720537..2720539,2720546..2720551,2720558..2720563)) /locus_tag="STM2574" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340911" regulatory complement(2720617..2720622) /regulatory_class="ribosome_binding_site" /locus_tag="STM2574" /note="putative RBS for STM2574; RegulonDB:STMS1H002673" gene 2720727..2721653 /locus_tag="STM2575" /db_xref="GeneID:1254097" CDS 2720727..2721653 /locus_tag="STM2575" /note="similar to E. coli cyn operon positive regulator (AAC73441.1); Blastp hit to AAC73441.1 (299 aa), 30% identity in aa 4 - 229" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461510.1" /db_xref="GeneID:1254097" /translation="MNIKQLHSFLILCDELHYGRAASRLFITQPSLSQQIKQLESSLK TILFKRKGRGIKLTKAGIILQRHANKIMLDLKNAENELLPYQDQQRDTISIGVSGSYL VLPAFRNFMAHHPEISLNVKEFSTEQTIKKLTDSAVDIGIVYRTALPAQLSSTMLFED EIIAAIPLSHPLATRERLHLKDLNDQPIIVLNDSLLLRGIITTEFNNRKVVPNVICEL DNHYSCLEYAEAQIGIAFITRSLTHLSTPKNVRLVSLGIPAFFIPVMLVHSNDLSLDN ATICLLKQIKNFYTVDNKSAPEKSWPEQKIGV" misc_feature 2720727..2721584 /locus_tag="STM2575" /note="DNA-binding transcriptional regulator, LysR family [Transcription]; Region: LysR; COG0583" /db_xref="CDD:440348" gene 2721679..2721951 /gene="yfhL" /locus_tag="STM2576" /db_xref="GeneID:1254098" regulatory 2721679..2721684 /regulatory_class="ribosome_binding_site" /gene="yfhL" /locus_tag="STM2576" /note="putative RBS for yfhL; RegulonDB:STMS1H002674" CDS 2721691..2721951 /gene="yfhL" /locus_tag="STM2576" /note="similar to E. coli orf, hypothetical protein (AAC75615.1); Blastp hit to AAC75615.1 (86 aa), 94% identity in aa 1 - 86" /codon_start=1 /transl_table=11 /product="putative ferredoxin" /protein_id="NP_461511.1" /db_xref="GeneID:1254098" /translation="MALLITKKCINCDMCEPECPNEAISMGDSIYEINSDKCTECVGH YETPTCQKVCPIPNTILQDPAHVESEEQLWDKFVLMHHADKL" misc_feature 2721691..2721930 /gene="yfhL" /locus_tag="STM2576" /note="YfhL family 4Fe-4S dicluster ferredoxin; Region: di_4Fe-4S_YfhL; NF033683" /db_xref="CDD:468141" gene complement(2722063..2722460) /gene="acpS" /locus_tag="STM2577" /db_xref="GeneID:1254099" CDS complement(2722063..2722443) /gene="acpS" /locus_tag="STM2577" /EC_number="2.7.8.7" /note="CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase, phosphopanthetheinyltransferase; similar to E. coli CoA:apo-[acyl-carrier-protein] pantetheinephosphotransferase (AAC75616.1); Blastp hit to AAC75616.1 (126 aa), 94% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="holo-[acyl-carrier-protein] synthase, subunit" /protein_id="NP_461512.1" /db_xref="GeneID:1254099" /translation="MAILGLGTDIVEIARIEAVISRSGERLARRVLSDNEWAIWETHQ QPVRFLAKRFAVKEAAAKAFGTGIRNGLAFNQFEVFNDELGKPRLRLWGEALTLAEKL GVAHMHVTLADERHYACATVILES" misc_feature complement(2722066..2722440) /gene="acpS" /locus_tag="STM2577" /note="4'-phosphopantetheinyl transferase; Provisional; Region: acpS; PRK00070" /db_xref="CDD:234610" gene complement(2722443..2723184) /gene="pdxJ" /locus_tag="STM2578" /db_xref="GeneID:1254100" CDS complement(2722443..2723174) /gene="pdxJ" /locus_tag="STM2578" /note="similar to E. coli pyridoxine biosynthesis (AAC75617.1); Blastp hit to AAC75617.1 (243 aa), 93% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="carries out condensation and ring closure step after PdxA in pyridoxine biosynthesis" /protein_id="NP_461513.1" /db_xref="GeneID:1254100" /translation="MAELLLGVNIDHIATLRNARGTDYPDPVQAAFIAEQAGADGITV HLREDRRHITDRDVRILRQTLHTRMNLEMAVTEEMLAIAVETRPHFCCLVPEKRQEVT TEGGLDVAGQRDKMRDACARLAAAGIQVSLFIDADETQINAAAEVGAPFIEIHTGCYA NAETDAEQAKELARIASAATLAARLGLKVNAGHGLTYHNVKAIAALPEMHELNIGHAI IGRAVMTGLKEAVAEMKRLMLEARG" misc_feature complement(2722452..2723165) /gene="pdxJ" /locus_tag="STM2578" /note="pyridoxine 5'-phosphate synthase; Provisional; Region: PRK05265" /db_xref="CDD:235380" misc_feature complement(order(2722527..2722532,2722593..2722598, 2722716..2722718,2722776..2722778,2722857..2722859, 2722866..2722871,2722959..2722961,2723019..2723024, 2723034..2723036,2723040..2723042,2723115..2723117, 2723139..2723144,2723148..2723150)) /gene="pdxJ" /locus_tag="STM2578" /note="active site" /db_xref="CDD:237977" misc_feature complement(order(2722536..2722538,2722542..2722547, 2722596..2722598,2722605..2722607,2722716..2722718, 2722722..2722724,2722776..2722778,2722782..2722784, 2722899..2722901,2722905..2722907,2722959..2722961, 2722965..2722967,2722971..2722973,2723046..2723048, 2723148..2723150)) /gene="pdxJ" /locus_tag="STM2578" /note="hydrophilic channel [active]" /db_xref="CDD:237977" misc_feature complement(order(2722692..2722697,2723115..2723117)) /gene="pdxJ" /locus_tag="STM2578" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:237977" misc_feature complement(order(2722596..2722598,2722716..2722718, 2722959..2722961,2723040..2723042)) /gene="pdxJ" /locus_tag="STM2578" /note="catalytic residues [active]" /db_xref="CDD:237977" misc_feature complement(2722857..2722889) /gene="pdxJ" /locus_tag="STM2578" /note="active site lid [active]" /db_xref="CDD:237977" regulatory complement(2722455..2722460) /regulatory_class="ribosome_binding_site" /gene="acpS" /locus_tag="STM2577" /note="putative RBS for acpS; RegulonDB:STMS1H002675" regulatory complement(2723179..2723184) /regulatory_class="ribosome_binding_site" /gene="pdxJ" /locus_tag="STM2578" /note="putative RBS for pdxJ; RegulonDB:STMS1H002676" gene complement(2723186..2723914) /gene="recO" /locus_tag="STM2579" /db_xref="GeneID:1254101" CDS complement(2723186..2723914) /gene="recO" /locus_tag="STM2579" /note="DNA repair protein RECO (recombination protein O). (SW:RECO_SALTY)" /codon_start=1 /transl_table=11 /product="gap repair gene" /protein_id="NP_461514.1" /db_xref="GeneID:1254101" /translation="MEGWQRAFVLHSRPWSETSLMLDVFTEESGRVRLVAKGARSKRS NLKGALQPFTPLLLRYSGRGEVKTLRSAEAVSLALPLSGITLYSGLYINELLSRVLEY ETRFSELFFDYLNCIQALAGTTGSPEPALRRFELALLGHLGYGVNFTHCAGSGERVDD TMTYRYREEKGFFASVVIDNNTFTGRHLKALEAREFPDVDTLRAAKRFTRMALKPYLG GKPLKSRELFRQFMPKRTVKTKKD" misc_feature complement(2723222..2723914) /gene="recO" /locus_tag="STM2579" /note="Recombinational DNA repair protein RecO (RecF pathway) [Replication, recombination and repair]; Region: RecO; COG1381" /db_xref="CDD:440991" gene complement(2723926..2724842) /gene="era" /locus_tag="STM2580" /db_xref="GeneID:1254102" CDS complement(2723926..2724831) /gene="era" /locus_tag="STM2580" /note="believed to be involved in coordination of cell cycle, energy metabolism, cell division; GTP-binding protein ERA. (SW:ERA_SALTY)" /codon_start=1 /transl_table=11 /product="GTPase" /protein_id="NP_461515.1" /db_xref="GeneID:1254102" /translation="MSTDKTYCGFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTR HRIVGIHTEGPYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWT PDDEMVLNKLRDGKAPVILAVNKVDNVQEKVDLLPHLQFLASQMNFLDIVPISAETGM NVDTIAGIVRKHLPEAIHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEI ERFVTNERGGYDINGLILVEREGQKKMVIGNKGAKIKTIGIEARKDMQEMFEAPVHLE LWVKVKSGWADDERALRSLGYVDDL" misc_feature complement(2723941..2724822) /gene="era" /locus_tag="STM2580" /note="GTPase Era; Reviewed; Region: era; PRK00089" /db_xref="CDD:234624" gene complement(2724828..2725518) /gene="rnc" /locus_tag="STM2581" /db_xref="GeneID:1254103" CDS complement(2724828..2725508) /gene="rnc" /locus_tag="STM2581" /EC_number="3.1.26.3" /note="ribonuclease III. (SW:RNC_SALTY)" /codon_start=1 /transl_table=11 /product="RNase III, ds RNA" /protein_id="NP_461516.1" /db_xref="GeneID:1254103" /translation="MNPIVINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLG DSILSFVIANALYHRFPRVDEGDMSRMRATLVRGNTLAELAREFDLGECLRLGPGELK SGGFRRESILADTVEALIGGVFLDSNIQTVEQLILNWYKTRLDEISPGDKQKDPKTRL QEYLQGRHLPLPSYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQ ALKKLELE" misc_feature complement(2724879..2725493) /gene="rnc" /locus_tag="STM2581" /note="dsRNA-specific ribonuclease [Transcription]; Region: Rnc; COG0571" /db_xref="CDD:440336" regulatory complement(2724837..2724842) /regulatory_class="ribosome_binding_site" /gene="rnc" /locus_tag="STM2581" /note="putative RBS for era; RegulonDB:STMS1H002677" regulatory complement(2725513..2725518) /regulatory_class="ribosome_binding_site" /gene="rnc" /locus_tag="STM2581" /note="putative RBS for rnc; RegulonDB:STMS1H002678" gene complement(2725782..2726767) /gene="lepB" /locus_tag="STM2582" /db_xref="GeneID:1254104" CDS complement(2725782..2726756) /gene="lepB" /locus_tag="STM2582" /EC_number="3.4.21.89" /note="signal peptidase I. (SW:LEP_SALTY)" /codon_start=1 /transl_table=11 /product="leader peptidase (signal peptidase I), serine protease" /protein_id="NP_461517.1" /db_xref="GeneID:1254104" /translation="MANMFALILVIATLVTGILWCVDKFVFAPKRRARQAAAQTASGD ALDNATLNKVAPKPGWLETGASVFPVLAIVLIVRSFLYEPFQIPSGSMMPTLLIGDFI LVEKFAYGIKDPIYQKTLIETGHPKRGDIVVFKYPEDPKLDYIKRAVGLPGDKITYDP VAKEVTIQPGCSSGQACENALPVTYSNVEPSDFVQTFARRNGGEATSGFFEVPLNETK ENGIRLTERKETLGDVTHRILMVPIAQDQLGMYYQQPGQPLATWVVPPGQYFMMGDNR DNSADSRYWGFVPEANLVGKAVAIWMSFDKQEGEWPTGVRLSRIGGIH" misc_feature complement(2725785..2726756) /gene="lepB" /locus_tag="STM2582" /note="signal peptidase I; Region: PRK10861" /db_xref="CDD:182787" regulatory complement(2726762..2726767) /regulatory_class="ribosome_binding_site" /gene="lepB" /locus_tag="STM2582" /note="putative RBS for lepB; RegulonDB:STMS1H002679" gene complement(2726773..2728572) /gene="lepA" /locus_tag="STM2583" /db_xref="GeneID:1254105" CDS complement(2726773..2728572) /gene="lepA" /locus_tag="STM2583" /note="similar to E. coli GTP-binding elongation factor, may be inner membrane protein (AAC75622.1); Blastp hit to AAC75622.1 (599 aa), 96% identity in aa 1 - 599" /codon_start=1 /transl_table=11 /product="GTP-binding elongation factor" /protein_id="NP_461518.1" /db_xref="GeneID:1254105" /translation="MKNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSM DLERERGITIKAQSVTLDFKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVV DAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPERVAEEIEDIVGIDATDAVR CSAKTGVGVTDVLERLVRDIPPPQGDPDGPLQALIIDSWFDNYLGVVSLVRIKNGTMR KGDKIKVMSTGQTYNADRLGIFTPKQVDRTELKCGEVGWLVCAIKDILGAPVGDTLTS ARNPAEKALPGFKKVKPQVYAGLFPVSSDDYESFRDALGKLSLNDASLFYEPESSSAL GFGFRCGFLGLLHMEIIQERLEREYDLDLITTAPTVVYEVETTAKETIYVDSPSKLPP LNNIYELREPIAECHMLLPQAYLGNVITLCIEKRGVQTNMVYHGNQVALTYEIPMAEV VLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINNERVDALALITHRDNSQSRG RELVEKMKDLIPRQQFDIAIQAAIGTHIIARSTVKQLRKNVLAKCYGGDISRKKKLLQ KQKEGKKRMKQIGNVELPQEAFLAILHVGKDNK" misc_feature complement(2726788..2728572) /gene="lepA" /locus_tag="STM2583" /note="Translation elongation factor EF-4, membrane-bound GTPase [Translation, ribosomal structure and biogenesis]; Region: LepA; COG0481" /db_xref="CDD:440249" gene 2728973..2730470 /gene="gogB" /locus_tag="STM2584" /db_xref="GeneID:1254106" regulatory 2728973..2728978 /regulatory_class="ribosome_binding_site" /gene="gogB" /locus_tag="STM2584" /note="putative RBS for gogB; RegulonDB:STMS1H002680" CDS 2728977..2730470 /gene="gogB" /locus_tag="STM2584" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage leucine-rich repeat protein" /protein_id="NP_461519.1" /db_xref="GeneID:1254106" /translation="MTYRLKKRMKIGFQPAILQYAYTSNEATSNLELLNKWRIESPDI EKEERNSIYDKIIEANHTGSLSITAHHVTSIPVFPDNLSELNLSSCYTLESIPNLPDG LKSLTISGNQTIKISYFPDSLESLSIDMQAYEENYTFPALPYGLKSFTACYGKFLPPL PPHLSSLSLQNFSEILCAELPYKLDKLDLQNCPFLPLMKMLPEELKELSIELIRTVPG TVIDDILPDKLKKLSINFCDNIKLPVKLPVNLKSINLSSRTPIAWEIPTCNLPAHIDI STDGYVKLNPEFLTRSDITFSNKPAGDVLSFQPGDVVYGLCKARDRVNTLVNSLYYFS KKDIIIQNTLTDAVWDRKNRAVFNKDEKIAERLNDVQRGIFFREFLSQHKKYNITEDK YSDLSNEECWIKTSKAGLEFQTRLRERSVIFVIDNLVDAISDIANKTGKHGNSITAHE LRWVYRNRHDDLVKQNVKFFLNGEAISHEDVFSLVGWDKYKPKNRNR" misc_feature 2729001..2730467 /gene="gogB" /locus_tag="STM2584" /note="type III secretion effector GogB; Region: PRK15386" /db_xref="CDD:237954" gene 2731352..2731902 /locus_tag="STM2585" /db_xref="GeneID:1254107" regulatory 2731352..2731357 /regulatory_class="ribosome_binding_site" /locus_tag="STM2585" /note="putative RBS for STM2585; RegulonDB:STMS1H002681" CDS 2731357..2731902 /locus_tag="STM2585" /note="similar to transposase" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461520.1" /db_xref="GeneID:1254107" /translation="MMRFVYIYILVIYGSYLWFSLGGNMFTINSTNRVASTIAPYACV SDVNLEDKATFLDEHTSIHANDSSLQCFVLNDQHVPQNTLATDVEGYNRGLQERISLE YQPLESIVFLLGTPAVLETKESLSLPVSPDALTQKLLSISSNDECKLSGSTSCTTPAS HNPPSGYIAQYRHSAEVFPDE" gene 2733014..2733241 /locus_tag="STM2585A" /db_xref="GeneID:1254108" CDS 2733014..2733241 /locus_tag="STM2585A" /note="homolog of pagK" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461521.1" /db_xref="GeneID:1254108" /translation="MPKFNRQRIIKHVKSVFLAMILILPSSLYSALTIAADSQDHKKE ETIKPMPQKWCNLWPAGIPFPEDWFKMCRGY" misc_feature 2733041..2733232 /locus_tag="STM2585A" /note="Phage-encoded virulence factor; Region: PAGK; pfam15284" /db_xref="CDD:317659" gene complement(2733338..2733923) /locus_tag="STM2586" /db_xref="GeneID:1254109" CDS complement(2733338..2733916) /locus_tag="STM2586" /note="similar to phage tail assembly protein; phage tail assembly protein (gi|2460256)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461522.1" /db_xref="GeneID:1254109" /translation="MTFKMSDTPQTIKIFNLRSDTNEFIGAGDAYIPPHTGLPANCTD IAPPDIPASHIAIFDAETGTWSLHEDHRGETVYDTTTGNQVYISAPGPLPENVTSVSP DGEYQKWDGKAWVKDEAAETAARLREAEGTKSRLLQMASEKIAPLQDAVDLDEATDKE KASLLAWRKYRVQVNRVDTLKPVWPEKPASSL" misc_feature complement(2733350..2733703) /locus_tag="STM2586" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; pfam02413" /db_xref="CDD:426761" gene complement(2733906..2734735) /locus_tag="STM2587" /db_xref="GeneID:1254110" CDS complement(2733906..2734730) /locus_tag="STM2587" /note="similar to phage tail assembly protein; phage tail assembly protein (gi|2460256)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461523.1" /db_xref="GeneID:1254110" /translation="MIKLILSAPVPAMAVAFEHSFQNTENVEIIPGPFETIPEFDCMV SAANSFGLMDGGVDAAITAYFGPQLQERVQQHILREYLGEQPVGTAFVIETGNSKYPW LVHAPTMRVPLIIDGTDAVYNATRAALLAIFQHNKSAGEDRKIKSVVFPAMGAGCGQV SPGSVARQMKLAWDGFINCTTEINWQYASARQNAVFSTTAYCPSKALCPNARTEYIGF GDYRTYCKKSGNTCISPRHQVDDIYIGAHSHAVFLSPNSHGKHLKPEYLSGVKNDV" misc_feature complement(2734203..2734730) /locus_tag="STM2587" /note="macrodomain superfamily; Region: Macro_SF; cl00019" /db_xref="CDD:469581" misc_feature complement(order(2734257..2734280,2734407..2734409, 2734551..2734553,2734557..2734559,2734593..2734595)) /locus_tag="STM2587" /note="putative ADP-ribose binding site [chemical binding]; other site" /db_xref="CDD:394871" regulatory complement(2733918..2733923) /regulatory_class="ribosome_binding_site" /locus_tag="STM2586" /note="putative RBS for STM2586; RegulonDB:STMS1H002682" gene complement(2734727..2737105) /locus_tag="STM2588" /db_xref="GeneID:1254111" CDS complement(2734727..2737099) /locus_tag="STM2588" /note="similar to tail fiber-like protein; similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 49% identity in aa 3 - 515, 56% identity in aa 878 - 1084, 42% identity in aa 1008 - 1122, 33% identity in aa 354 - 568, 26-1073758628dentity in aa 116 - 345, 26% identity in aa 961 - 1111, 26-1073758654dentity in aa 940 - 1106, 25% identity in aa 766 - 828, 26% identity in aa 778 - 841" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461524.1" /db_xref="GeneID:1254111" /translation="MPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPD DAGRYSMDVEQGQYTVTLLVEGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEA LRRFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQAAESATAAVNAAGAAEASAT QAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADVSRTAA GDSAAAAAASATAAQTSAARAGASETAAKTSETQAASSAGDAGASATAAAASEKAAAA SAAAAKISETNAATSASTAAASATAASSSASEASNHAAASDTSASLAAQSSTAAGAAA TRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVHAVMDEVQ TKAPLDSPVFTGTPTTPTPPDDAKGLQTANAEFVRKLIAALVGSVPESLDTLQELADA LGNDPNFATTITNMIAGKQPLDDTLTALSGKSIEGLIEYVGLRSTIDKAAGALPAGGT AVAANRLASRGALPALTGTTRGSDGGLIMGEVYNNGYPTQYGNILRLTGTGDGEILIG WSGTNGAPAPAYIRSHRDTADAEWSEWAMLYTTLNPPPDSHPVGAAIAWPSDATPAGY ALMQGQSFDKSAYPLLAIAYPSGVIPDMRGWTIKGKPISGRAVLSQEMDGNKSHSHTA RAQDTDLGTKSTSSFDYGTKSTNTTGNHTHQFGGYINSYWGDSNHTSFQPGGGAWTQA AGDHAHTVYIGGHEHTMYIGPHGHVVIVDADGNAETTVKNIAFNYIVRLA" misc_feature complement(2736698..2737099) /locus_tag="STM2588" /note="Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain; Region: Peptidase_M14NE-CP-C_like; cl21470" /db_xref="CDD:473874" misc_feature complement(2735789..>2736043) /locus_tag="STM2588" /note="Phage-related tail fiber protein [Mobilome: prophages, transposons]; Region: COG5301" /db_xref="CDD:444101" misc_feature complement(2735918..2736031) /locus_tag="STM2588" /note="Phage tail fibre repeat; Region: Phage_fiber_2; pfam03406" /db_xref="CDD:427282" misc_feature complement(2735129..2735272) /locus_tag="STM2588" /note="Phage Tail Collar Domain; Region: Collar; pfam07484" /db_xref="CDD:429485" regulatory complement(2734730..2734735) /regulatory_class="ribosome_binding_site" /locus_tag="STM2587" /note="putative RBS for STM2587; RegulonDB:STMS1H002683" regulatory complement(2737100..2737105) /regulatory_class="ribosome_binding_site" /locus_tag="STM2588" /note="putative RBS for STM2588; RegulonDB:STMS1H002684" gene complement(2737434..2740796) /locus_tag="STM2589" /db_xref="GeneID:1254112" CDS complement(2737434..2740796) /locus_tag="STM2589" /note="similar to host specificity protein-J in phage lambda" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461525.2" /db_xref="GeneID:1254112" /translation="MGKGGGKGHTPREAPDNLKSTQLLSVIDAISEGPIEGPVNGLQS VLVNQTPVVDRDGNTNIHGVKVVYRVGEQEQTPLEGFESSGAETVLGVQVKYDNPVTR TITAANIDRLRFTFGVQSLVEANSKGDRNPTSVRLQIHLERYGQWVVEKEITITGKTT TQYLASVIVDNLPPRPFGIRMVRVTADSTTDQLQNNTVWSSYTEIIDVRQRYPNTAVI GLQVESEQFGSQQVTRNYHFFGRIIHVPSNYDPVARTYSGIWDGTFKPAYSNNPAWCL WDVLTHPRYGMGQRIGAADVDRWALYAIGQYCDQMVPDGFGGTEPRMTFNAYLAQQRK AWDVLTDFCSAMRCMPVWNGQMMTFVQDRPSDTVWTYTRSNVVMPDEGTPFRYSFSAR KDRHNAVEVNWIDPDNGWQTSTELVEDTVAISHYGRNLVKMDAFGCTSRGQAHRAGLW LIKTELLETQTVDFSVGAEGLRHVPGDVIEVCDEDYAGISLGGRILSVDRARRILTLD REITLPSSGTTLISLMDGEGLPVSVDVQSVTDGVQVQVSRIPDGVAEYSVWGLKLPSL RQRLFRCVAVRENDDGTYAITAVQHVPEKESIVDNGASFDPQPGTIHGTVPPAIQHLT TEILAEEGQYQVLARWDTPRVVKGASFSLRLNVAAEDGSDRLVSSAGTPDTQYRFRGL TPGRYTLSVRAVNSQGQQGDPASTQFSISAPAAPSFIELTPGYFQITATPRQAVYDPT VQYEFWFSDAQITDIHQVENAARYLGTALYWIAASVNIRPGRDYYFYIRAVNQVGKSA FVEATGQASNDAAGYLDFFKGQITESHLGKELLEKVELTEDNASKLQQFSKEWQDAND KWNAMWGVKIEQTKDGKYYVAGLGLSMEDMPDGKISQFLVAADRIAYINPANGNETPG FVMQGDQIIMNEAFLKYLSAPTITSGGNPPAFSLTPDGKLTAKNADISGHINAVSGSF TGEINATSGKFSGVIEAREFVGDICGSKVMQGVSIRETNDERSTSTRYTDSATYQIGK TITVMANCERNGGSGAITVTININGQVKTAEVIPYTAGLPAMYQTVVFSVYTTSPVVD ISVSLRVRGQYTTSASVWPLVMVSRSGNNFTN" misc_feature complement(2737626..2740151) /locus_tag="STM2589" /note="Phage-related protein, tail protein J [Mobilome: prophages, transposons]; Region: COG4733" /db_xref="CDD:443767" regulatory complement(2740796..2740801) /regulatory_class="ribosome_binding_site" /note="putative RBS for STM2589; RegulonDB:STMS1H002685" gene complement(2740858..2741511) /locus_tag="STM2590" /db_xref="GeneID:1254113" CDS complement(2740858..2741505) /locus_tag="STM2590" /note="similar to tail assembly protein I in phage lambda" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461526.1" /db_xref="GeneID:1254113" /translation="MATTHALHLATPGMARICLYGDLQRFCRRVSLQVASGAEAVRAL AVQLPGLRQKLNDGWYQVRIAGDDVTADTLTTSLHDPLPPGAVIHIVPRLGGAKSGGV FQAVLGAALIAVAWWNPAGWLGAAAVSGMYMTGASMVLGGVAQMLAPKPKMSEMRQTD NGRQNTYFSSLDNMVANGNTLPVLYGEMQVGSRVISQEVSTADEGDGGQVVVIGR" misc_feature complement(2740891..2741469) /locus_tag="STM2590" /note="Phage-related protein, tail assembly protein I [Mobilome: prophages, transposons]; Region: COG4723" /db_xref="CDD:443758" gene complement(2741403..2742009) /locus_tag="STM2591" /db_xref="GeneID:1254114" CDS complement(2741403..2742002) /locus_tag="STM2591" /note="similar to tail assembly protein K in phage lambda" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461527.1" /db_xref="GeneID:1254114" /translation="MAPEDWLRAETQGDIVALVHSHPGGQPYLSDVDRRLQVQSDLPW WLVCAGQVHKFRCVPHLTGRHYKHGVFDCYTLFRDAYHLAGIDMPDFHRDDDWWRHGD NLYLDNLETTGFYRVSAASAQPGDVLICCFGSSVPNHAAIYCGDGELLHHIPEQLSKR ERYTDKWQRRTHSIWRHRAWRASAFTGICNDFAAASACR" misc_feature complement(2741823..>2742002) /locus_tag="STM2591" /note="Mpr1p, Pad1p N-terminal (MPN) domains; Region: MPN; cl13996" /db_xref="CDD:472685" misc_feature complement(2741475..2741816) /locus_tag="STM2591" /note="NlpC/P60 family; Region: NLPC_P60; cl21534" /db_xref="CDD:473902" regulatory complement(2741506..2741511) /regulatory_class="ribosome_binding_site" /locus_tag="STM2591" /note="putative RBS for STM2590; RegulonDB:STMS1H002686" regulatory complement(2742004..2742009) /regulatory_class="ribosome_binding_site" /locus_tag="STM2591" /note="putative RBS for STM2591; RegulonDB:STMS1H002687" gene complement(2742147..2742853) /locus_tag="STM2592" /db_xref="GeneID:1254115" CDS complement(2742147..2742845) /locus_tag="STM2592" /note="similar to phage tail component L" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461528.1" /db_xref="GeneID:1254115" /translation="MQDISQDTLNESAKLAQSARITLWEIDLTQSGGDRYFFCNEANE KGEAVTWQGRKYDVYPVDGCGFEMNGKGAAARPSLKVSNLYGMVTGMVEDLHSLVGAT VIRRIVYARFLDAVNFQNGNQEADPEQESVSRWVIEQCSDLTAVSATFVLATPTETDG CVFPGRIMLANTCTWIYRSDECGYTGPAVADEFDNPTADPAKDACSRCARGCALRNNT GNFGGFLSINKLSQ" misc_feature complement(2742150..2742830) /locus_tag="STM2592" /note="Phage tail protein [Mobilome: prophages, transposons]; Region: gp18; COG4672" /db_xref="CDD:443709" regulatory complement(2742848..2742853) /regulatory_class="ribosome_binding_site" /locus_tag="STM2592" /note="putative RBS for STM2592; RegulonDB:STMS1H002689" gene complement(2742855..2743192) /locus_tag="STM2593" /db_xref="GeneID:1254116" CDS complement(2742855..2743184) /locus_tag="STM2593" /note="similar to phage tail component M; lambda phage M tail component homolog (gi|2232363)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461529.1" /db_xref="GeneID:1254116" /translation="METFNWKIRPDMTVESEPKVTSIKLGDGYEQRRPAGLNNHLAKY NVTVRIRKGEHQNLEAFLSRHGGVKSFLWTPPYTWTQIRVICRKWSINVGSLWVTVTT TFEQVVI" misc_feature complement(2742861..2743178) /locus_tag="STM2593" /note="Phage minor tail protein; Region: Phage_min_tail; pfam05939" /db_xref="CDD:428681" gene complement(2743187..2746289) /locus_tag="STM2594" /db_xref="GeneID:1254117" CDS complement(2743187..2746282) /locus_tag="STM2594" /note="similar to phage tail component H; lambda phage H tail component homolog (gi|2232364)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461530.1" /db_xref="GeneID:1254117" /translation="MDQIANLVIDLSIDSAEFRNEVPRIKKLLNDAAGDSERSAARMQ RFLDKQTEATRRTSASLEQVTASSTAYSSAVEKSAAASTRLAADVDQTRQRVEALGRK LREEQAQSAAVAAAQDRTSAAFYRQIDSVKQLSGGLQELQRIQAQVRQAKGRGDISQG DYLALVSETARKTRELTDAEALATQKKAQFIRRLKEQTTVQGLSRTELLRVKAAELGV SSAADIYIRKLERTGTATHTLGLKSAAARRELGVLAGELARGNFGALRGSGITLANRA GWIEQLMSPKGMMLGGLAGGVAAAVYGLGKAYYEGAKESETFNKQLILTGSYAGKTTG QLNAMAKSLAGNGVTQHDAAGVLAQVVGSGAFTGQAMAMVSRTATRMQENVGQSVDET IRQFKRLRDDPVNAAKELDRTLHFLTATQLEQIRVLGEQGRVADAAKIAMSAYSEEMN KRMGDVHDNLGWIERAWNAVGDAAKWAWDRMLDIGREDTLDEKIATLQEKIARDRKTP WTVSSSQTEYDQQQLNELQEQKRQKDLLDAKAQAERNYQETQKRRNEQNAALNRDNET ESLRHQREVARITAMQYADAAVRNAALERENERHKKALSQQAKKPKTYHNDEARRLLL QYSQQQAQTEGQITAAKLSTTEKMTEAHKQLLSFQQRIADLSGKKLTADEQSVLAHKD EIALALQKLDISQQDLQHQNALNELKKKTLTLTSQLADEESRVRQQHAMALATMGMGD QQRGRYEERLKIQQHYQEQLEQLKRDSKAKGTYGSDEYRQAEQALKGSLDRRLAEWAD YNAKVDAAQGDWTLGASRALDNFLAQGGNVAGMTENVFTNAFNGMADSIANFAVTGKG SFRSLTVSILADLAKMEARIAASKLLGSVLAMFGFGTSAGGSTPSGAYSSAALSVIPN ADGGVYRSAGLSQYSGSIVNRPTFFAFAKGAGVMGEAGPEAILPLRRGADGKLGVVAA GSGGMAMFAPEYNIEIHNDAGNGQIGPQALQAVYNIGKKAAIDFWQQQSRDGGIAGGG R" misc_feature complement(<2744774..>2746252) /locus_tag="STM2594" /note="Chromosome segregation ATPase Smc [Cell cycle control, cell division, chromosome partitioning]; Region: Smc; COG1196" /db_xref="CDD:440809" misc_feature complement(2745005..2745598) /locus_tag="STM2594" /note="Prophage tail length tape measure protein; Region: TMP_2; pfam06791" /db_xref="CDD:429120" misc_feature complement(<2743925..>2744827) /locus_tag="STM2594" /note="exonuclease SbcC; Region: sbcc; TIGR00618" /db_xref="CDD:129705" misc_feature complement(2743307..2744326) /locus_tag="STM2594" /note="phage tail tape measure protein, lambda family; Region: tape_meas_lam_C; TIGR01541" /db_xref="CDD:273681" regulatory complement(2743187..2743192) /regulatory_class="ribosome_binding_site" /locus_tag="STM2593" /note="putative RBS for STM2593; RegulonDB:STMS1H002690" gene complement(2746254..2746598) /locus_tag="STM2595" /db_xref="GeneID:1254118" CDS complement(2746254..2746592) /locus_tag="STM2595" /note="similar to minor tail protein" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461531.1" /db_xref="GeneID:1254118" /translation="MNRELAFVMRLAREFRRPDWRQMLAEMSATELGEWAEHFGKNSF SDMLLDAEFATLKSLISGLVTGTHHDAEMFSLITDPESLHEKTDDELMILGEGITGGV RYGPDSEPGH" misc_feature complement(2746266..2746565) /locus_tag="STM2595" /note="Minor tail protein T; Region: Phage_tail_T; pfam06223" /db_xref="CDD:283804" regulatory complement(2746284..2746289) /regulatory_class="ribosome_binding_site" /locus_tag="STM2595" /note="putative RBS for STM2594; RegulonDB:STMS1H002691" gene complement(2746589..2746990) /locus_tag="STM2596" /db_xref="GeneID:1254119" CDS complement(2746589..2746984) /locus_tag="STM2596" /note="similar to minor tail protein" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461532.1" /db_xref="GeneID:1254119" /translation="MFLNTDTFNYGGHSIVLSELSALQRVDYLKFIQQRTADYDAQPE TLTEAERQTEFMQMGVDINAWLVSRSLCESKKEEEARALYESVRLEWSYEALGRGADM VLSLSGMRLPASQEDDSGSEKDTTTPEKS" misc_feature complement(2746622..2746984) /locus_tag="STM2596" /note="Bacteriophage lambda tail assembly chaperone, TAC, protein G; Region: Phage_TAC_2; pfam06894" /db_xref="CDD:284344" regulatory complement(2746593..2746598) /regulatory_class="ribosome_binding_site" /locus_tag="STM2595" /note="putative RBS for STM2595; RegulonDB:STMS1H002692" regulatory complement(2746985..2746990) /regulatory_class="ribosome_binding_site" /locus_tag="STM2596" /note="putative RBS for STM2596; RegulonDB:STMS1H002693" gene complement(2747035..2747789) /locus_tag="STM2597" /db_xref="GeneID:1254120" CDS complement(2747035..2747781) /locus_tag="STM2597" /note="similar to major tail protein" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461533.1" /db_xref="GeneID:1254120" /translation="MMGTPNPLVKTKGAGTTFWLYTGSGDAFKNPLADDDWLRLAGIK DLQPGEMSADAEDDDYLDDENADWKSTTQGQKSVGDTTATLAWKPGETGQKKLVELFD TGEVRAFRIRYPNGTVDVFRGWLSSLGKTVTSKEVMTRSVKITGVGRPSLAEEDTPDV VSVSGVTVAPASATVAAGATTTLTFTVKPDNASDKTLQVATADPLIATVTLKDNVATV KGVKAGSVNIVGISSDGSLVAVAAVTVTAS" misc_feature complement(2747323..2747727) /locus_tag="STM2597" /note="Lambda phage tail tube protein, TTP; Region: Phage_TTP_12; pfam16461" /db_xref="CDD:406780" regulatory complement(2747784..2747789) /regulatory_class="ribosome_binding_site" /locus_tag="STM2597" /note="putative RBS for STM2597; RegulonDB:STMS1H002694" gene complement(2747789..2748197) /locus_tag="STM2598" /db_xref="GeneID:1254121" CDS complement(2747789..2748190) /locus_tag="STM2598" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461534.1" /db_xref="GeneID:1254121" /translation="MSKHTLIRRAVLEKLESVTGAPVTLFDGLPAFVEQEDLPAIAVW LTDAQYTGLMTDEDDWQATLHTAVFLRAQAPDTELDIWMEEKIFPALEEVSGLERLID TMTPLGYDYQRDSEMATWGMAEITYRITYTN" misc_feature complement(2747798..2748184) /locus_tag="STM2598" /note="Phage minor tail protein U; Region: Phage_tail_U; pfam06141" /db_xref="CDD:399267" gene 2748167..2749429 /locus_tag="STM2599" /db_xref="GeneID:1254122" regulatory 2748167..2748172 /regulatory_class="ribosome_binding_site" /locus_tag="STM2599" /note="putative RBS for STM2599; RegulonDB:STMS1H002696" CDS 2748179..2749429 /locus_tag="STM2599" /note="similar to E. coli putative virulence protein (AAC74514.1); Blastp hit to AAC74514.1 (402 aa), 36% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461535.1" /db_xref="GeneID:1254122" /translation="MFAHQNASFPPRPEGRGGKEAVFRLTVFCIITFSSLICEAMKRA YKYRFYPTTEQAELLAQTFGCVRFVYNSILRWRTDAYYERKEKIGYLQANARLTALKK EPEFAWLNDVSCVPLQQSLRHQQTAFANFFAGRAAYPAFKSKRHKQAAEFTASAFKYR DGKLYMAKNKIPLDVRWSRPLPSVPSTVTISKDAAGRYFVSCLCEFEPASLPITSSMV GIDVGLKDLFVTDTGFRSGNPRHTAKYAARLALLQRRLSKKAKGSKNRAKAHLKVARL HAKIADCRLDALHKATRKLINDNQVVCVESLKVRNMIRNPSLSKAIADASWGELVRQL RYKGEWAGRSVVAIDQFFPSSKRCSCCGFIMKKMPLDVRKWQCPECGTDHDRDVNAAR NIKAAGLAVLAHGEPVNPESLKAA" misc_feature 2748299..2749387 /locus_tag="STM2599" /note="Transposase [Mobilome: prophages, transposons]; Region: InsQ; COG0675" /db_xref="CDD:440439" regulatory complement(2748192..2748197) /regulatory_class="ribosome_binding_site" /locus_tag="STM2598" /note="putative RBS for STM2598; RegulonDB:STMS1H002695" gene complement(2749478..2750063) /locus_tag="STM2600" /db_xref="GeneID:1254123" CDS complement(2749478..2750056) /locus_tag="STM2600" /note="similar to minor tail protein Z" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage" /protein_id="NP_461536.1" /db_xref="GeneID:1254123" /translation="MKGLENAIRNLNSLDRQMVPRASIWAVNRVAQKAVSVATRKVAR ETVAGDNQVRGLPLKLVRQRVRLFKAGTDGKRSARIRINRGNLPAIKLGAAQVRMSKR RGKLLYRGSVLKIGPYLFRDAFIQQLANGRWHVMRRVNGKNRYPIDVVKIPLSGPLTQ AFESATQSLIDEEIPKQLGYALKQQLRLYLSR" misc_feature complement(2749481..2750056) /locus_tag="STM2600" /note="Prophage minor tail protein Z (GPZ); Region: Minor_tail_Z; pfam06763" /db_xref="CDD:284235" regulatory complement(2750058..2750063) /regulatory_class="ribosome_binding_site" /locus_tag="STM2600" /note="putative RBS for STM2600; RegulonDB:STMS1H002697" gene complement(2750084..2750472) /locus_tag="STM2601" /db_xref="GeneID:1254124" CDS complement(2750084..2750467) /locus_tag="STM2601" /note="similar to minor capsid protein FII of phage N15" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461537.1" /db_xref="GeneID:1254124" /translation="MSQSENLFDTAISQADDAILRVMGTVATITSGVLAGATLTGVFD DPESVSYAAGGVRIEGDKPTFFVKTSLTVHLKRPDTLTILGDTFWVDRITPAGGDSSI ILLGRGTPPTDNRRRTGGMFDCSPA" misc_feature complement(2750117..2750467) /locus_tag="STM2601" /note="Phage Head-Tail Attachment; Region: Phage_attach; pfam05354" /db_xref="CDD:283102" regulatory complement(2750467..2750472) /regulatory_class="ribosome_binding_site" /locus_tag="STM2601" /note="putative RBS for STM2601; RegulonDB:STMS1H002698" gene complement(2750478..2750844) /locus_tag="STM2602" /db_xref="GeneID:1254125" CDS complement(2750478..2750837) /locus_tag="STM2602" /note="similar to DNA packaging protein gp9 of phage N14" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461538.1" /db_xref="GeneID:1254125" /translation="MATKEENIQRLRELATRLGRDPDVSGSAAELSQRVMEWEEEAEA EHLPAVENDSDESIVPPGIGQRSERVLIRALRTLHICAIDPDSNRELDMVMAGNPARI SQHDVDELIAAGLIIEL" misc_feature complement(2750490..2750831) /locus_tag="STM2602" /note="DNA packaging protein FI; Region: Packaging_FI; pfam14000" /db_xref="CDD:290707" regulatory complement(2750839..2750844) /regulatory_class="ribosome_binding_site" /locus_tag="STM2602" /note="putative RBS for STM2602; RegulonDB:STMS1H002699" gene complement(2750895..2751930) /locus_tag="STM2603" /db_xref="GeneID:1254126" CDS complement(2750895..2751923) /locus_tag="STM2603" /note="similar to head protein gp7 of phage 21" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461539.1" /db_xref="GeneID:1254126" /translation="MGLFTTRQLLGYTEQKVKFNPLFLSLFFRRTVTFPTQEVMLDKI TGKTPIAAYVSPVVGGKVLRNRGGETRVLRPGYVKPKHEVNYAQVVERLPGEDPARLN DPAYRRLRILTDNLKQEEKAIVQVEEMQAVSAVLNGKYTMQGEQFDTVEVDFGRSAGN NIIQATGKKWSEQDRETFDPTYDLDMYCDQASGLINIAVMDGKVWRLLNGFKLFREKL DTRRGSNSQLETAVKDLGAVVSFKGYYGDLAIVVAKTSYVADNGTEKRYLPEGTLVLG NTAAEGIRCYGAIQDSQALAEGIVAATRYPKHWLTVGDPANEYTMTQSAPLMVLPDPD EFVIVTVG" misc_feature complement(2750904..2751914) /locus_tag="STM2603" /note="Phage major capsid protein E; Region: Phage_cap_E; pfam03864" /db_xref="CDD:427552" regulatory complement(2751925..2751930) /regulatory_class="ribosome_binding_site" /locus_tag="STM2603" /note="putative RBS for STM2603; RegulonDB:STMS1H002700" gene complement(2751978..2752332) /locus_tag="STM2604" /db_xref="GeneID:1254127" CDS complement(2751978..2752325) /locus_tag="STM2604" /note="similar to head protein gpshp of phage 21" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461540.1" /db_xref="GeneID:1254127" /translation="MSFTTTIEKRADNRIFAGNDPAHTATGVSGITAATPMLTPLMLD DTTGKLVAWDGQKAGTAVGVLALELDGSENLLTYWKSGTFATESLAWPKSVDAIKQAN AFAGSAVSHAALP" misc_feature complement(2751993..2752313) /locus_tag="STM2604" /note="Bacteriophage lambda head decoration protein D; Region: HDPD; pfam02924" /db_xref="CDD:427057" regulatory complement(2752327..2752332) /regulatory_class="ribosome_binding_site" /locus_tag="STM2604" /note="putative RBS for STM2604; RegulonDB:STMS1H002701" gene complement(2752338..2753842) /locus_tag="STM2605" /db_xref="GeneID:1254128" CDS complement(2752338..2753834) /locus_tag="STM2605" /note="similar to head-tail preconnector gp5 of phage 21; similar to E. coli putative protease (AAC74354.1); Blastp hit to AAC74354.1 (349 aa), 27% identity in aa 124 - 300" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461541.1" /db_xref="GeneID:1254128" /translation="MQRNLSHIISQATSAPLLLEPAYARVFFCALGRESGINSLHIPG NNESLDQSDMALVTGDFMATGKPQARFYQVVNGIAVLPVTGTLVHKLGGMRPFSGMTG YDGVTARLQQAVSDPEVKGILLDIDSPGGQAAGAFDCADMIYRMREQKPVWALANETA CSAAMLLAAACSHRLVTQTSRMGSIGVVMAHTSYAEKLKQEGIDITLIYSGAHKADLT PSQKLPESVYADYQQRMDEARKMFAEKVARYTGLSVDAVMATEAAVYDGQAIITTGLA DGMVNAADAIGVMAEAINSNKTGGTMPELSAADAVTQENQRVMGILGCPEARGHEALA QMLAGQPGMSVAQAKSILAAAAPADTTSTADRILALEEAGGRETLAQTLAAMPEMTVE QARTILAASPIAAATSLHDAVMALDEAKGREELAEKLAVMPGMTTDQARDLLAAAPDK SGNAGLSMNNAFDAFMQSHSPGPISGGKGHSNDTETTLLMSIPGTSAT" misc_feature complement(2752965..2753606) /locus_tag="STM2605" /note="Signal peptide peptidase A (SppA) 36K type, a serine protease, has catalytic Ser-Lys dyad; Region: S49_Sppa_36K_type; cd07022" /db_xref="CDD:132933" misc_feature complement(order(2753028..2753030,2753037..2753039, 2753043..2753051,2753118..2753120,2753265..2753276, 2753298..2753300,2753304..2753306,2753349..2753351, 2753460..2753462,2753583..2753585)) /locus_tag="STM2605" /note="tandem repeat interface [polypeptide binding]; other site" /db_xref="CDD:132933" misc_feature complement(order(2753112..2753114,2753124..2753126, 2753208..2753222,2753226..2753228,2753424..2753426, 2753502..2753504,2753523..2753525)) /locus_tag="STM2605" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:132933" misc_feature complement(2753349..2753351) /locus_tag="STM2605" /note="active site residues [active]" /db_xref="CDD:132933" gene complement(2753824..2755410) /locus_tag="STM2606" /db_xref="GeneID:1254129" CDS complement(2753824..2755404) /locus_tag="STM2606" /note="similar to head-tail preconnector gp4 of phage 21" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461542.1" /db_xref="GeneID:1254129" /translation="MKRTPVLVDVHGTPLRESLGYTGGGIGFGGQMADWMPPAESVDA ALLPSLRLGNARADDLVRNNGIAANAVALHKDHIVGHLFLISYRPNWRYLGMRESAAK SFVDEVEAAWTEYCDGIFGEMDAEGKRTFTEFIREGVGVHAFNGEIFLQPVWDAETTQ VFRTRFKAVSPKRVDTPGYARGNRQLRAGVETDRNGKALAYHVCDDDWPVAGGERWTR IPRFLPSGRPAMLHIFEPVEDGQTRGANQFYSVMERLKMLDTLQATQLQSAIVKAMYA ATIESELDSEKAFEYITAADNKDTPLVNMLANYARYYSTNSIKLGGVKIPHLYPGDEL NLQTAQDSDNGFSALEQALLRYIAAGLGVSYEQLSRDYSQVSYSSARASANESWRYFL GRRRFIAGRLATQMFSCWLEEALIRGVIRAPRARFSFWEARSSWSRSEWIGAGRMAID GLKEVQESVMRIEAGLSTYEKELAIMGEDYQEIFRQQVRESEERRAAGLSRPVWITDT YQQQIAASRQTEEEKRAT" misc_feature complement(2753893..2755314) /locus_tag="STM2606" /note="Phage portal protein, lambda family; Region: Phage_portal_2; cl19194" /db_xref="CDD:473148" regulatory complement(2753837..2753842) /regulatory_class="ribosome_binding_site" /locus_tag="STM2605" /note="putative RBS for STM2605; RegulonDB:STMS1H002702" gene complement(2755401..2755612) /locus_tag="STM2607" /db_xref="GeneID:1254130" CDS complement(2755401..2755604) /locus_tag="STM2607" /note="similar to head to tail joining protein" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461543.1" /db_xref="GeneID:1254130" /translation="MATITELQEARVALHDLMTGKRVATVQKDGRRVEFTATSVGDLK KYVAELEASLCNGRRRAPVGVRL" misc_feature complement(2755422..2755604) /locus_tag="STM2607" /note="Region: gpW; pfam02831" /db_xref="CDD:397116" regulatory complement(2755405..2755410) /regulatory_class="ribosome_binding_site" /locus_tag="STM2607" /note="putative RBS for STM2606; RegulonDB:STMS1H002703" gene complement(2755588..2757526) /locus_tag="STM2608" /db_xref="GeneID:1254131" CDS complement(2755588..2757519) /locus_tag="STM2608" /note="similar to terminase large chain gp2 of N15; similar to E. coli orf, hypothetical protein (AAC73662.1); Blastp hit to AAC73662.1 (247 aa), 53% identity in aa 7 - 132" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461544.1" /db_xref="GeneID:1254131" /translation="MISGERRANNANRAITNGLIALHIPVPLTTVQWADEYYYLPKES SYTPGKWETLPFQVAIMNAMGYELIRVVNLIKSARVGYTKMLLGVEGYFIEHKSRNSL LFQPTDSSAEDFMKSHVEPTIRDVPVLLELAPWFGRKHRDNTLTLKRFSSGVGFWCLG GAAAKNYREKSVDVVCYDELSSFEPDVEKEGSPTLLGDKRIEGSVWPKSIRGSTPKVK GSCQIEKAANESAHFMRFYVPCPHCGEEQYLKFGDGSTPFGLKWEKSKPETVYYLCEH NGCVIRQSELDQKAGRWICDNTGMWTRDGLAYFSASGEEVPPPRSITFHIWTAYSPFT TWIQIIYDWLDALKDPNGVKTFINTTLGEPYEEAVAEKLSHELLLEKVIHYAAPVPER VVYLTAGIDSQRNRYEMYVWGWAPGEEAFLIDKQIIMGRHDDEDTLQRVDAVINKKYR HADGTDISISRICWDIGGIDAEIVYKRSKKHGIFRVLPVKGASVYGKPVITMPKKRNQ SGVFLCEIGTDTAKEMLYARMGAVTAPADEATPYAIRFPDNPDVFTEVEAKQLVAEEL VEKLVNGKFRLLWDAKGRRNEALDCLVYASAALRVSVQRWQLDLEALATSRKSEEQDT PTLEQLAAMLAGGVNGNNH" misc_feature complement(2755612..2757495) /locus_tag="STM2608" /note="Phage terminase, large subunit GpA [Mobilome: prophages, transposons]; Region: gpA1; COG5525" /db_xref="CDD:444276" regulatory complement(2755607..2755612) /regulatory_class="ribosome_binding_site" /locus_tag="STM2607" /note="putative RBS for STM2607; RegulonDB:STMS1H002704" gene complement(2757491..2758036) /locus_tag="STM2609" /db_xref="GeneID:1254132" CDS complement(2757491..2758036) /locus_tag="STM2609" /note="similar to DNA packaging protein Nu1 of phage 21; similar to E. coli homolog of Qin prophage packaging protein NU1 (AAC74621.1); Blastp hit to AAC74621.1 (189 aa), 58% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461545.2" /db_xref="GeneID:1254132" /translation="MNVNKKKLAEIFGCDVRTVTAWQSQGLPLVSGGGKGNEAVFDTA AAISWYAERDASIENEKLRKEVDDLRAAAESDLNPGTIDYERYRLTKAQADAQELKNA EREGLVLETELFTYILQRVAQEIAGILSRVPLVLQRKYPDLCQSHIDVVRTEIARASG RAATIADVEKWTDDFRRAQGE" misc_feature complement(2757545..2758036) /locus_tag="STM2609" /note="Phage DNA packaging protein Nu1; Region: Phage_Nu1; pfam07471" /db_xref="CDD:369382" regulatory complement(2757521..2757526) /regulatory_class="ribosome_binding_site" /locus_tag="STM2609" /note="putative RBS for STM2608; RegulonDB:STMS1H002705" regulatory complement(2758046..2758051) /regulatory_class="ribosome_binding_site" /note="putative RBS for STM2609; RegulonDB:STMS1H002706" gene 2758310..2758724 /locus_tag="STM2610" /db_xref="GeneID:1254133" regulatory 2758310..2758315 /regulatory_class="ribosome_binding_site" /locus_tag="STM2610" /note="putative RBS for STM2610; RegulonDB:STMS1H002707" CDS 2758323..2758724 /locus_tag="STM2610" /note="similar to E. coli orf, hypothetical protein (AAC74262.1); Blastp hit to AAC74262.1 (133 aa), 80% identity in aa 1 - 133" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461546.1" /db_xref="GeneID:1254133" /translation="MKFKSIAKTVFLFALLTSAGFATGKNVNVEFDKGQNSARYSGVI KGYDYDTYNFQARKGQKVHVSISNEGADTYLFGPGISDSVDLSRYSSELDGNGQYTLP ASGKYELKVLQTRNEARKNKAKKYSVNIQIK" misc_feature 2758464..2758655 /locus_tag="STM2610" /note="Bacterial pre-peptidase C-terminal domain; Region: PPC; pfam04151" /db_xref="CDD:427748" gene complement(2758960..2759418) /locus_tag="STM2611" /db_xref="GeneID:1254134" CDS complement(2758960..2759412) /locus_tag="STM2611" /note="similar to E. coli bacteriophage lambda endopeptidase homolog (AAC73657.1); Blastp hit to AAC73657.1 (153 aa), 46% identity in aa 8 - 153" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461547.3" /db_xref="GeneID:1254134" /translation="MFVGLLLVSLIVAGRLANHYRNNAITYKYQRDTATHNLKLANET ITDMTKRQRDVAALDAKYTKELADAQNRNTDLQRRLAAGSRVRVEGRCTVPTTTTTKT ASTRRVGNAATVELSPVAGQNVLDIRAGIISDQEKLKYLQEYIRTQCK" misc_feature complement(2758963..2759346) /locus_tag="STM2611" /note="Bacteriophage Rz lysis protein; Region: Phage_lysis; pfam03245" /db_xref="CDD:427215" regulatory complement(2759413..2759418) /regulatory_class="ribosome_binding_site" /locus_tag="STM2611" /note="putative RBS for STM2611; RegulonDB:STMS1H002708" gene complement(2759430..2759889) /locus_tag="STM2612" /db_xref="GeneID:1254135" CDS complement(2759430..2759882) /locus_tag="STM2612" /note="similar to morphogenesis protein of phage B103; similar to E. coli bacteriophage lambda lysozyme homolog (AAC73656.1); Blastp hit to AAC73656.1 (165 aa), 39% identity in aa 35 - 161" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461548.1" /db_xref="GeneID:1254135" /translation="MMRISEKGITLIKEFEGCSLKAYPDPGTGGDPWTIGYGWTHSVD GKPVKPGMMIDEATAERLLKTGLVGYENDVSRLVKVKLTQGQFDALVSFAYNLGARTL STSTLLRKLNAGDYAGAADEFLRWNKAGSKVLNGLTRRREAERALFLS" misc_feature complement(2759436..2759861) /locus_tag="STM2612" /note="endolysin and autolysin; Region: lyz_endolysin_autolysin; cd00737" /db_xref="CDD:381599" gene complement(2759866..2760202) /locus_tag="STM2613" /db_xref="GeneID:1254136" CDS complement(2759866..2760195) /locus_tag="STM2613" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461549.1" /db_xref="GeneID:1254136" /translation="MNDKTPEFWAAVLTGLKNAWPQILGALMAGLIAYGRLIYDGATR KNKWLEGVLCGALSLCVTSALDVVGLPVSISPFVGGIIGFVGVDKLREIAISALKKRA GVNDENQ" misc_feature complement(2759878..2760195) /locus_tag="STM2613" /note="phage holin, lambda family; Region: holin_lambda; TIGR01594" /db_xref="CDD:273709" regulatory complement(2759884..2759889) /regulatory_class="ribosome_binding_site" /locus_tag="STM2613" /note="putative RBS for STM2612; RegulonDB:STMS1H002709" regulatory complement(2760197..2760202) /regulatory_class="ribosome_binding_site" /locus_tag="STM2613" /note="putative RBS for STM2613; RegulonDB:STMS1H002710" gene 2760465..2761157 /locus_tag="STM2614" /db_xref="GeneID:1254137" regulatory 2760465..2760470 /regulatory_class="ribosome_binding_site" /locus_tag="STM2614" /note="putative RBS for STM2614; RegulonDB:STMS1H002711" CDS 2760471..2761157 /locus_tag="STM2614" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461550.1" /db_xref="GeneID:1254137" /translation="MPAGIKPIFINNMMSIYGLSNPHDSKVFPDLPEHQDNPSQLRLQ HDGLATDDKARLEPMCLAEYLISGPGGMDPDIEIDDDTYDECREVLSRILEDAYTQSG TFRRLMNYAYDQELHDVEQRWLLGAGENFGTTVTDEDLESSEGRKVIALNLDDTDDDS IPECYESNDGPQPFDTTRSFIHEVVHALTHLQDKEDNNPRGPVVEYTNIILKEMGHTS PPRIAYESSN" misc_feature 2760543..2761142 /locus_tag="STM2614" /note="PipA protein; Region: PipA; pfam07108" /db_xref="CDD:369211" gene complement(2761650..2761723) /locus_tag="STM2615" /db_xref="GeneID:1254138" tRNA complement(2761650..2761723) /locus_tag="STM2615" /product="tRNA-OTHER" /db_xref="GeneID:1254138" gene complement(2762067..2762637) /locus_tag="STM2616" /db_xref="GeneID:1254139" CDS complement(2762067..2762630) /locus_tag="STM2616" /note="similar to antirepressor protein of phage P22" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage" /protein_id="NP_461551.1" /db_xref="GeneID:1254139" /translation="MTTQISVETLSPITHNQIPVITTELLAHLYGTKIKNISDNFLNN TTRFVVGKHFFKIEKNELREFKNRPETIGLVGKNARSLILWTERGAARHAKMLETDQA WEVFEKLEDCYFSQTLPSPTRQVQPAVDMLNIDLLIKIRDGNVKDIRQVGLDMFVGKV EQILSGLRDSGWIVIKRDLLAEKLATW" misc_feature complement(2762346..2762603) /locus_tag="STM2616" /note="ORF6N domain; Region: ORF6N; pfam10543" /db_xref="CDD:431348" regulatory complement(2762632..2762637) /regulatory_class="ribosome_binding_site" /locus_tag="STM2616" /note="putative RBS for STM2616; RegulonDB:STMS1H002713" gene complement(2762903..2763587) /locus_tag="STM2617" /db_xref="GeneID:1254140" CDS complement(2762903..2763580) /locus_tag="STM2617" /note="similar to antiterminator Q" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461552.1" /db_xref="GeneID:1254140" /translation="MNTQYLQYVREQLMVATADLSGETKGQLLAWLENAQFDTKNYPR KKQRIWDEETESWITLNNPPIPGKQSLAKGSAIPLVKPVEYSTASWRRAVLSLDEHYK AWLLWNYSENTCWEHQVEITQWGWSAFAAQLDGKKMAGKTQERLRALIWLAAQDVKSE LAGREVYQYKELAGLVGVSEKNWSETFTRHWLTMRAIFLRLDQASLLSVSESRSEQVA FNLYALN" misc_feature complement(2762921..2763568) /locus_tag="STM2617" /note="Phage antitermination protein Q; Region: Phage_antiter_Q; pfam06323" /db_xref="CDD:428887" gene complement(2763577..2763724) /locus_tag="STM2618" /db_xref="GeneID:1254141" CDS complement(2763577..2763717) /locus_tag="STM2618" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461553.1" /db_xref="GeneID:1254141" /translation="MKPELIEILRMRWQRLRIYRRPGSVLVDYRILRNFVRIYQFTGF TQ" misc_feature complement(2763598..2763717) /locus_tag="STM2618" /note="YlcG family protein; Region: YlcG_phage_expr; NF033498" /db_xref="CDD:411140" regulatory complement(2763582..2763587) /regulatory_class="ribosome_binding_site" /locus_tag="STM2618" /note="putative RBS for STM2617; RegulonDB:STMS1H002714" gene complement(2763714..2764331) /locus_tag="STM2619" /db_xref="GeneID:1254142" CDS complement(2763714..2764325) /locus_tag="STM2619" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461554.1" /db_xref="GeneID:1254142" /translation="MAKLPRRKCANKECRQWFHPIREGQIVCSYQCASAVGKEQTRKA REAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLG CISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVCNVYKSGNIEAYRTALVER YGEAAVLALENNNTPHRWTVEELKEIRLAALADLRALKKLEAA" misc_feature complement(2763768..2764325) /locus_tag="STM2619" /note="Bacteriophage Lambda NinG protein; Region: NinG; pfam05766" /db_xref="CDD:428621" regulatory complement(2763719..2763724) /regulatory_class="ribosome_binding_site" /locus_tag="STM2618" /note="putative RBS for STM2618; RegulonDB:STMS1H002715" regulatory complement(2764326..2764331) /regulatory_class="ribosome_binding_site" /locus_tag="STM2619" /note="putative RBS for STM2619; RegulonDB:STMS1H002716" gene complement(2764534..2765142) /locus_tag="STM2620" /db_xref="GeneID:1254143" CDS complement(2764534..2765136) /locus_tag="STM2620" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461555.1" /db_xref="GeneID:1254143" /translation="MAHELQLIKQSSGILIPATPETSEILQSKIKLGAVLVAEFRQVR NPAFHRRFFALLNLGFEYWEPTGGAISANERKLVNGYAKFLAAYGGNESALLDAAEQY LEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEV EFQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSWAG" misc_feature complement(2764543..2765121) /locus_tag="STM2620" /note="Protein of unknown function (DUF1367); Region: DUF1367; pfam07105" /db_xref="CDD:429295" regulatory complement(2765137..2765142) /regulatory_class="ribosome_binding_site" /locus_tag="STM2620" /note="putative RBS for STM2620; RegulonDB:STMS1H002717" gene complement(2765552..2765791) /locus_tag="STM2621" /db_xref="GeneID:1254144" CDS complement(2765552..2765785) /locus_tag="STM2621" /note="hypothetical protein 13 (gi|7467262)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461556.1" /db_xref="GeneID:1254144" /translation="MRIELVISRAKQLPEGAVPALEKELITRLQNQYENCNLTIRRGS QDGLSIVGAADGDKKRIQSILQETWESADDWFY" misc_feature complement(2765558..2765746) /locus_tag="STM2621" /note="DinI-like family; Region: DinI; pfam06183" /db_xref="CDD:428810" regulatory complement(2765786..2765791) /regulatory_class="ribosome_binding_site" /locus_tag="STM2621" /note="putative RBS for STM2621; RegulonDB:STMS1H002718" gene complement(2766077..2766370) /locus_tag="STM2622" /db_xref="GeneID:1254145" CDS complement(2766077..2766370) /locus_tag="STM2622" /note="hypothetical protein 11 (gi|7467261)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461557.1" /db_xref="GeneID:1254145" /translation="MMNYEDKLMYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQK VPVMELKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD" gene complement(2766445..2766762) /locus_tag="STM2623" /db_xref="GeneID:1254146" CDS complement(2766445..2766756) /locus_tag="STM2623" /note="hypothetical protein 11 (gi|7467260)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461558.1" /db_xref="GeneID:1254146" /translation="MSNIDKRALREVAERATPGNWRRTSSLFNGITVTPFSLCGEEVT LAHTVEKRDAEFIAAANPATVLALLDVLYEFGEDEVAISEYVTNLEDALRVAAAPQQE E" misc_feature complement(<2766448..2766753) /locus_tag="STM2623" /note="Ead/Ea22-like protein; Region: Ead_Ea22; pfam13935" /db_xref="CDD:379401" gene complement(2766753..2767106) /locus_tag="STM2624" /db_xref="GeneID:1254147" CDS complement(2766753..2767100) /locus_tag="STM2624" /note="hypothetical protein (gi|7467246)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461559.1" /db_xref="GeneID:1254147" /translation="MARPKTQSERMIILERIIGLVKEQGRITTNDVVAIFGVHRTTAE KYLRIALERGGFIRHGRCGIFRDQRAVIDYDLRRYSSSQVTGFSALPVLEKSPVMQVY GASKMSINKGGAQ" misc_feature complement(2766756..2767100) /locus_tag="STM2624" /note="Bacterial protein of unknown function (DUF977); Region: DUF977; pfam06163" /db_xref="CDD:310626" regulatory complement(2766757..2766762) /regulatory_class="ribosome_binding_site" /locus_tag="STM2623" /note="putative RBS for STM2623; RegulonDB:STMS1H002719" regulatory complement(2767101..2767106) /regulatory_class="ribosome_binding_site" /locus_tag="STM2624" /note="putative RBS for STM2624; RegulonDB:STMS1H002720" gene complement(2767111..2767867) /locus_tag="STM2625" /db_xref="GeneID:1254148" CDS complement(2767111..2767860) /locus_tag="STM2625" /note="similar to dnaC homolog in S. typhimurium; dnaC protein homolog (gi|7443681)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461560.1" /db_xref="GeneID:1254148" /translation="MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRS EELDRMNQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGF ASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYDGGQSEASLLD DLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGAR VIDRLQMDGGMWVNFDWESYRKNVSHLRIVK" misc_feature complement(2767114..2767860) /locus_tag="STM2625" /note="putative replication protein; Provisional; Region: PRK12377" /db_xref="CDD:183482" misc_feature complement(2767513..2767536) /locus_tag="STM2625" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(2767246..2767248,2767348..2767350, 2767510..2767533)) /locus_tag="STM2625" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(2767345..2767362) /locus_tag="STM2625" /note="Walker B motif; other site" /db_xref="CDD:99707" misc_feature complement(2767195..2767197) /locus_tag="STM2625" /note="arginine finger; other site" /db_xref="CDD:99707" regulatory complement(2767862..2767867) /regulatory_class="ribosome_binding_site" /locus_tag="STM2625" /note="putative RBS for STM2625; RegulonDB:STMS1H002721" gene complement(2767863..2768852) /locus_tag="STM2626" /db_xref="GeneID:1254149" CDS complement(2767863..2768846) /locus_tag="STM2626" /note="similar to replication protein 15; probable replication protein (gi|7467283)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461561.1" /db_xref="GeneID:1254149" /translation="MSMSNTAEIYKFPAPIPTQQECRMADLENGYLRLANQIQDALCI VELSGREFRVLNAIIRLTYGWSKKSDRIANSLIADKTTLKVKHVSEAVLSLAYRNIII LRRIGQTRYIGINTNLDKWAYSKPHCSKCPVSFPDDEIATWIISVPETRDSYPRKGGR ASPKTGIVIPENRDSVLPHSAIPENGDSYPRKEGRASPKTGNTKDIIPKTNIKDLTPF NPPKGKVKFDPLSIPVPEWLNAASWNEWVTYRQQSGKPIKTELTVTKAFRLLKECLDE GHDPVNVINTSIANGYQGLFKPKFALNDRRAGRDVNHISAPDKTIPTGFRG" misc_feature complement(2768484..2768771) /locus_tag="STM2626" /note="Bacteriophage replication protein O; Region: Phage_rep_O; pfam04492" /db_xref="CDD:461329" misc_feature complement(2767866..>2767922) /locus_tag="STM2626" /note="DnaT DNA-binding domain; Region: DnaT; cl46275" /db_xref="CDD:480615" regulatory complement(2768847..2768852) /regulatory_class="ribosome_binding_site" /locus_tag="STM2626" /note="putative RBS for STM2626; RegulonDB:STMS1H002722" gene complement(2768931..2769305) /locus_tag="STM2627" /db_xref="GeneID:1254150" CDS complement(2768931..2769305) /locus_tag="STM2627" /note="similar to cI protein in phage N; probable regulatory protein (gi|7467282)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461562.1" /db_xref="GeneID:1254150" /translation="MAYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNR LASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTA VEILADAGLKAERARPDALGWD" misc_feature complement(<2769096..2769197) /locus_tag="STM2627" /note="Bacteriophage CII protein; Region: Phage_CII; pfam05269" /db_xref="CDD:398780" gene 2769611..2770040 /locus_tag="STM2628" /db_xref="GeneID:1254151" regulatory 2769611..2769616 /regulatory_class="ribosome_binding_site" /locus_tag="STM2628" /note="putative RBS for STM2628; RegulonDB:STMS1H002723" CDS 2769630..2770040 /locus_tag="STM2628" /note="probable regulatory protein (gi|7467281)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461563.1" /db_xref="GeneID:1254151" /translation="MNKNLHPIFAKRIQQVLDENGWSMADLSRRVMLSHTSVRKWASG TSVASGERLKRLSAVTGRPEYWFFMEPGDESEGERAEPKPRVLDEKEETLLSLFNQLP EAEKLRVILHTKAVLQEMDLLKNNVFDLINDLKK" misc_feature 2769654..2769989 /locus_tag="STM2628" /note="transcriptional repressor DicA; Reviewed; Region: PRK09706" /db_xref="CDD:182039" gene 2770084..2770350 /locus_tag="STM2629" /db_xref="GeneID:1254152" regulatory 2770084..2770089 /regulatory_class="ribosome_binding_site" /locus_tag="STM2629" /note="putative RBS for STM2629; RegulonDB:STMS1H002724" CDS 2770090..2770350 /locus_tag="STM2629" /note="hypothetical protein 2 (gi|7467263)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461564.1" /db_xref="GeneID:1254152" /translation="MLQDRTFSCTFCFTNRTFGFIVSFIDNKRIVVRCKTFRWPAIRQ TRVRMIDFARKPARQQAVPLNRIEVLIRRLCYLLAQKGDPDA" gene 2770336..2770501 /locus_tag="STM2630" /db_xref="GeneID:1254153" regulatory 2770336..2770341 /regulatory_class="ribosome_binding_site" /locus_tag="STM2630" /note="putative RBS for STM2630; RegulonDB:STMS1H002725" CDS 2770343..2770501 /locus_tag="STM2630" /note="hypothetical protein 4 (gi|7467265)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461565.1" /db_xref="GeneID:1254153" /translation="MLKQCGYCRKSIDEGKEVKNTLLYLNGSQLARKEKEYCSRQCAE YDQMAHES" misc_feature 2770349..2770498 /locus_tag="STM2630" /note="YdaE family protein; Region: YdaE_coli; NF041288" /db_xref="CDD:469185" gene 2770523..2770873 /locus_tag="STM2631" /db_xref="GeneID:1254154" CDS 2770523..2770873 /locus_tag="STM2631" /note="hypothetical protein 4 (gi|7467264)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461566.1" /db_xref="GeneID:1254154" /translation="MKNSPLIWRGFLHPEFKTGEIMEIVKIEMNLKAVNKSIALFNCE KKVSGVIHSNSTGETTVILDGGYVLGKFDCPHCAVKAISLLTVKVSDGEQAGFGNYRS YKLDYSEKFYQTIH" gene 2770988..2773885 /locus_tag="STM2632" /db_xref="GeneID:1254155" regulatory 2770988..2770993 /regulatory_class="ribosome_binding_site" /locus_tag="STM2632" /note="putative RBS for STM2632; RegulonDB:STMS1H002726" CDS 2771000..2773885 /locus_tag="STM2632" /note="exodeoxyribonuclease VIII homolog (gi|7467238)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461567.1" /db_xref="GeneID:1254155" /translation="MSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKS GAKLKDYFKAVATNFPVVNELPPEGELSLTFCDYYQLAKDNMTWTQIPGVTLPSSEAA AAARQHIVDGVDTETGEVLEDHTENFGNESNSPAQATAPAPELTVVATMPLRHRVLAQ YIGEGEYLYHVDASQKKEILRLEMDTDNSYVQNLLLAAENVEAFKKAIEHDIHKIVNA VKKVFPVDGKTPELATVIQFLKTWFETEHIDRGLLVKEWAKGNRVSAIQRTESGANAG GGNKTDRNPDYEHTLDTLDVEIAMATLPMDFNIYELPGSVYRRAKEIVKKKESPFKEW SAALRATPGILDYSRAAIFALIRSAHPEFYHYPGRLQGYINANLTETDHENPTEEALT AARHTPEKDAVEEANRQLAAARGEYVEGISDPNDPKWVKTGTSQPTTEPELVKNVGNG IFDVSALMQNSSTHGTETNPETTSNVQVQKADSDEKQAGDAVQAGEDDLGTGKEAVTV ENQNQAEAQQNVPESQQEEPEAAWPEYFEPGRYEGVPNEVYHAANGISSTQVKDARVS LMYFNARHVEKTIVKERSPVLDMGNLVHVLALQPENLEAEFSVEPEIPEGAFTTTATL REFIDAHNASLPALLSADDIKALLEEYNATLPSQMPLGASVDETYASYEQLPEEFQRI ENGTKHTATAMKACIKEYNVTLPAPVKTSGSRDALLEQLAIINPDLVAQEAQKSSPLK VSGTKADLIQAVKSVNPAVVFADELLDAWRENTEGKVLVTRQQLSTALNIQKALLEHP TAGKLLTHPSRAVEVSYFGIDEETGLEVRVRPDLELDMGGLRIGADLKTISMWNIKQE GLRAKLHREIIDRDYHLSAAMYCETAALDQFFWIFVNKDENYHWVAIIEASTELLELG MLEYRKTMREIANGFDTGEWSAPITEDYTDELNDFDVRRLEALRVQA" misc_feature 2771015..2773882 /locus_tag="STM2632" /note="exodeoxyribonuclease VIII; Region: PRK09709" /db_xref="CDD:236615" gene 2773844..2775005 /locus_tag="STM2633" /db_xref="GeneID:1254156" regulatory 2773844..2773849 /regulatory_class="ribosome_binding_site" /locus_tag="STM2633" /note="putative RBS for STM2633; RegulonDB:STMS1H002727" CDS 2773848..2775005 /locus_tag="STM2633" /note="similar to enterohemolysin 1 in E. coli; hypothetical protein AAC26069.1 (gi|7467267)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461568.3" /db_xref="GeneID:1254156" /translation="MCAALKRCAYRHKGKIMENTNIVTTEQQAPNTISASNAIFNVQA LGQLTAFANLMADSQVTVPAHLAGKPADCMAIVMQAMQWGMNPYAVAQKTHLVNGVLG YEAQLVNAVIASSSAIHGRFHYRYGGDWERCTRTQEITRDKNGKNGKYTVTERVRGWT DEDEIGLFVQVGAILRGESEITWGEPLYLSGVVTRNSPLWVSNPKQQIAYLGVKYWAR LYCPEVILGVYSPDEVEQREEREINPAPVQRMSVQEITSEVSTRTSAQESAANVDAVA DDLRERIDTASSVDQAKAIRADIESQKALLGTALFTELKNKAVKRYYQVNAQNKVEAV INSIPNPGEPEAAEMFAKAESTLGAAKRHLGDELHDKYRVTLDDMKPEYIG" misc_feature 2774001..2774570 /locus_tag="STM2633" /note="RecT family; Region: RecT; pfam03837" /db_xref="CDD:397770" gene 2775040..2775287 /locus_tag="STM2634" /db_xref="GeneID:1254157" regulatory 2775040..2775045 /regulatory_class="ribosome_binding_site" /locus_tag="STM2634" /note="putative RBS for STM2634; RegulonDB:STMS1H002728" CDS 2775048..2775287 /locus_tag="STM2634" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461569.1" /db_xref="GeneID:1254157" /translation="MRLINRSKQSPLGRRACDVALAAHHEKFGDYGRQKHVTNYTVVV DGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN" misc_feature 2775054..2775275 /locus_tag="STM2634" /note="Protein of unknown function (DUF4060); Region: DUF4060; pfam13269" /db_xref="CDD:433072" gene 2775321..2775612 /locus_tag="STM2635" /db_xref="GeneID:1254158" regulatory 2775321..2775326 /regulatory_class="ribosome_binding_site" /locus_tag="STM2635" /note="putative RBS for STM2635; RegulonDB:STMS1H002729" CDS 2775328..2775612 /locus_tag="STM2635" /note="similar to excisionase in phage phi-80; probable excisionase (gi|7467278)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461570.1" /db_xref="GeneID:1254158" /translation="MSKKIRDFELMSTREICCQLRISSRTLERYRKRPSDNNPFPEPD CSYMGGSNKWLKTKVNEWQVREMSRPTRRPMSHLNLPRDNKGRLIRSDVA" misc_feature 2775328..2775609 /locus_tag="STM2635" /note="excisionase Xis; Region: Xis_Gifsy_1; NF033499" /db_xref="CDD:411141" gene complement(2775590..2776825) /locus_tag="STM2636" /db_xref="GeneID:1254159" CDS complement(2775590..2776819) /locus_tag="STM2636" /note="similar to integrase in phage; probable integrase (gi|7467280)" /codon_start=1 /transl_table=11 /product="Gifsy-1 prophage protein" /protein_id="NP_461571.1" /db_xref="GeneID:1254159" /translation="MAISDSYLKSCLGRERDKVEEKADRDGLWVRISKKGAVTFFYRF RFLGKQDKMTIGSYPEFGLKAAREEVTKWAAILARGENPRIRQSLDKAKINSQYTFEE LFREWHAMVCVQKETSDQILRSFELHVFPKLGKYPAHQLTLHNWLTVLDRLAQGYTEI TRRVISNGRQCYSWAVKRQLLEVNPLSEMSGRDFGIQKKMGERTLDRKEIAIVWRAIE DSRLIERNKILYKLSLIWACRVGELRQAEVSHFDFEEGVWTVPWENHKTGRKSKKPII RPIIPEMLPLIQRAIELAPGRFVFSKYADKPMSEGFHMSISSNLVKFMLKAYNEQVPH FTIHDLRRTARTNFSELTEPHIAEMMLGHKLPGVWSVYDKYTYIEEMREAYSKWWARL MSIIEPDVLEFTPRQTG" misc_feature complement(2775629..2776780) /locus_tag="STM2636" /note="Integrase/recombinase, includes phage integrase [Replication, recombination and repair, Mobilome: prophages, transposons]; Region: FimB; COG0582" /db_xref="CDD:440347" regulatory complement(2776820..2776825) /regulatory_class="ribosome_binding_site" /locus_tag="STM2636" /note="putative RBS for STM2636; RegulonDB:STMS1H002730" gene complement(2777317..2777808) /gene="rseC" /locus_tag="STM2637" /db_xref="GeneID:1254160" CDS complement(2777317..2777796) /gene="rseC" /locus_tag="STM2637" /note="similar to E. coli sigma-E factor, negative regulatory protein (AAC75623.1); Blastp hit to AAC75623.1 (159 aa), 81% identity in aa 1 - 159" /codon_start=1 /transl_table=11 /product="regulator of sigma E (sigma 24) factor" /protein_id="NP_461572.1" /db_xref="GeneID:1254160" /translation="MIKEWATVVSWQNGQAVVSCDVKASCSSCASRAGCGSRVLNKLG PQTTHTIVVPSAEPLAPGQKVELGIAEKSLLGSALLVYMSPLAGLFLCAALFQMLFGS DLAALSGAVLGGVGGFLVARGYSRKLAERDAWQPVILNVALPPDLVRVETTSIETRQ" misc_feature complement(2777335..2777796) /gene="rseC" /locus_tag="STM2637" /note="SoxR-reducing system protein RseC; Region: PRK10862" /db_xref="CDD:182788" gene complement(2777793..2778768) /gene="rseB" /locus_tag="STM2638" /db_xref="GeneID:1254161" CDS complement(2777793..2778749) /gene="rseB" /locus_tag="STM2638" /note="similar to E. coli regulates activity of sigma-E factor (AAC75624.1); Blastp hit to AAC75624.1 (318 aa), 89% identity in aa 1 - 318" /codon_start=1 /transl_table=11 /product="anti sigma E (sigma 24) factor, negative regulator" /protein_id="NP_461573.1" /db_xref="GeneID:1254161" /translation="MKQLWFAMSLVAASLFFSANASADPASGALLQQMNIASQSLNYE LSFVSITKQGVESLRYRHARLDGRPLAQLLQLDGPRREVVQRGNEISYFEPGLEPFTL NGDYIVDSLPSLIYTDFKRLAPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWM DMDTKLPMRVDLLDRDGETLEQFRVIAFTVSQDIGSNMQALAKANLPPLLSVPGGEKT KFNWSPSWVPQGFSEVSSSRRPLPTMDNLPIESRLYSDGLFSFSVNVNRATQNSSDQM LRTGRRTVYSSVRDNAEITIVGELPPQTAKRIADSIKFRAVQ" misc_feature complement(2777796..2778749) /gene="rseB" /locus_tag="STM2638" /note="anti-sigma E factor; Provisional; Region: rseB; PRK09455" /db_xref="CDD:236525" misc_feature complement(order(2778207..2778209,2778402..2778404, 2778444..2778446,2778450..2778452,2778468..2778470, 2778474..2778476,2778501..2778503,2778507..2778509, 2778519..2778521,2778531..2778533,2778576..2778578, 2778582..2778596,2778603..2778605,2778633..2778635, 2778645..2778647)) /gene="rseB" /locus_tag="STM2638" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:319985" misc_feature complement(order(2778186..2778188,2778195..2778197, 2778201..2778203,2778207..2778209,2778234..2778236, 2778240..2778242,2778249..2778251,2778276..2778278, 2778282..2778284,2778312..2778314,2778468..2778470, 2778474..2778476,2778501..2778503,2778507..2778509, 2778525..2778527,2778531..2778533,2778570..2778572, 2778576..2778578,2778582..2778584,2778597..2778599, 2778603..2778605,2778609..2778611,2778615..2778617)) /gene="rseB" /locus_tag="STM2638" /note="hydrophobic core; other site" /db_xref="CDD:319985" misc_feature complement(order(2778444..2778446,2778459..2778461, 2778468..2778470,2778474..2778476,2778501..2778503, 2778507..2778509,2778525..2778527,2778591..2778593, 2778597..2778599)) /gene="rseB" /locus_tag="STM2638" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:319985" regulatory complement(2777803..2777808) /regulatory_class="ribosome_binding_site" /gene="rseC" /locus_tag="STM2637" /note="putative RBS for rseC; RegulonDB:STMS1H002731" gene complement(2778749..2779417) /gene="rseA" /locus_tag="STM2639" /db_xref="GeneID:1254162" CDS complement(2778749..2779399) /gene="rseA" /locus_tag="STM2639" /note="similar to E. coli sigma-E factor, negative regulatory protein (AAC75625.1); Blastp hit to AAC75625.1 (216 aa), 91% identity in aa 1 - 216" /codon_start=1 /transl_table=11 /product="anti sigma E (sigma 24) factor, negative regulator" /protein_id="NP_461574.1" /db_xref="GeneID:1254162" /translation="MQKEKLSALMDGETLDSELLKALTHDPEMQKTWESYHLIRDSMR GDTPDVLHFDISARVMAAIENEPVRQVSPLIPEAQPAPQQWQKMPFWKKVRPWAAQLT QMGVAACVSLAVIVGVQHYNGQSETSQQPETPVFNTLPMMGKASPVSLGVPSEAAPVG SQQQQVQEQRRRINAMLQDYELQRRLHSEQLQFEQAQTQQAAVQVPGIQTLGTQSQ" misc_feature complement(2778752..2779399) /gene="rseA" /locus_tag="STM2639" /note="anti-sigma-E factor RseA; Region: PRK10863" /db_xref="CDD:182789" misc_feature complement(order(2779211..2779216,2779220..2779228, 2779232..2779240,2779268..2779303,2779307..2779309, 2779337..2779342,2779361..2779381,2779388..2779393)) /gene="rseA" /locus_tag="STM2639" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:319992" regulatory complement(2778763..2778768) /regulatory_class="ribosome_binding_site" /gene="rseA" /locus_tag="STM2639" /note="putative RBS for rseB; RegulonDB:STMS1H002732" regulatory complement(2779412..2779417) /regulatory_class="ribosome_binding_site" /gene="rseA" /locus_tag="STM2639" /note="putative RBS for rseA; RegulonDB:STMS1H002733" gene complement(2779431..2780026) /gene="rpoE" /locus_tag="STM2640" /db_xref="GeneID:1254163" CDS complement(2779431..2780006) /gene="rpoE" /locus_tag="STM2640" /note="response to periplasmic stress; RNA polymerase sigma-e factor (sigma-24). (SW:RPOE_SALTY)" /codon_start=1 /transl_table=11 /product="sigma E (sigma 24) factor of RNA polymerase" /protein_id="NP_461575.1" /db_xref="GeneID:1254163" /translation="MSEQLTDQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVPSG DVPDVVQESFIKAYRALDSFRGDSAFYTWLYRIAVNTAKNYLVAQGRRPPSSDVDAIE AENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLRELDGLSYEEIA AIMDCPVGTVRSRIFRAREAIDNKVQPLIRR" misc_feature complement(2779440..2780006) /gene="rpoE" /locus_tag="STM2640" /note="RNA polymerase sigma factor RpoE; Region: RpoE_Sigma70; TIGR02939" /db_xref="CDD:131985" regulatory complement(2780021..2780026) /regulatory_class="ribosome_binding_site" /gene="rpoE" /locus_tag="STM2640" /note="putative RBS for rpoE; RegulonDB:STMS1H002734" gene 2780431..2782053 /gene="nadB" /locus_tag="STM2641" /db_xref="GeneID:1254164" CDS 2780431..2782053 /gene="nadB" /locus_tag="STM2641" /EC_number="1.4.3.-" /note="similar to E. coli quinolinate synthetase, B protein (AAC75627.1); Blastp hit to AAC75627.1 (540 aa), 89% identity in aa 1 - 540" /codon_start=1 /transl_table=11 /product="quinolinate synthetase, B protein" /protein_id="NP_461576.1" /db_xref="GeneID:1254164" /translation="MMTTPELSCDVLIIGSGAAGLSLALRLAEKHKVIVLSKGPVSEG STFYAQGGIAAVFDETDSIASHVEDTLIAGAGICDRHAVEFVASNARTCVQWLIDQGV LFDTHVQPNGKESYHLTREGGHSHRRILHAADATGKEVETTLVSRAQNHPNIQVLERS NAVDLIISDKMGLPGPRRVVGAWIWNRNKEWVETCHAKSVVLATGGASKVYQYTTNPD ISSGDGIAMAWRAGCRVANLEFNQFHPTALYHPQARNFLLTEALRGEGAYLKRPDGSR FMPDVDERGELAPRDIVARAIDHEMKQLGADCMFLDISHKPDDFVRQHFPMIYAKLLD LGMDLTKEPIPVVPAAHYTCGGVVVDDYGRTDVDGLYAIGEVSYTGLHGANRMASNSL LECLVYGWSAAMDIDRRMPSVHSVDALPAWDESRVENADERVVIQHNWHELRLLMWDY VGIVRTTKRLERALRRITMLQQEIDEYYANFRVSNNLLELRNLVQVAELIVRCAMMRK ESRGLHFTLDYPQQLAESGPSILSPLTPHINR" misc_feature 2780431..2782041 /gene="nadB" /locus_tag="STM2641" /note="L-aspartate oxidase; Provisional; Region: PRK09077" /db_xref="CDD:236374" gene complement(2782038..2782789) /gene="yfiC" /locus_tag="STM2642" /db_xref="GeneID:1254165" CDS complement(2782038..2782775) /gene="yfiC" /locus_tag="STM2642" /note="similar to E. coli putative enzyme (AAC75628.1); Blastp hit to AAC75628.1 (285 aa), 84% identity in aa 41 - 285" /codon_start=1 /transl_table=11 /product="putative transferase" /protein_id="NP_461577.1" /db_xref="GeneID:1254165" /translation="MSQSGSVLRRNGFTFKQFFVAHDRCAMKVGTDGILLGAWAPVAD VKRILDIGTGSGLLALMLAQRTDDNVPIDAVELDAGAAMQAQENVAHSPWPHRITVHT DDIQRWAPRQTVRFDLIISNPPYYEPGVECATPQREQARYTATLDHQTLLAIAADCIT EDGFFCVVLPEQIGNAFTQQALNMGWHLRLRTDVAENEARLPHRVLLAFSPQAGECFS DRLVIRGSDQHYSESYTALTQAFYLFM" misc_feature complement(2782053..2782751) /gene="yfiC" /locus_tag="STM2642" /note="tRNA1(Val) A37 N6-methylase TrmN6 [Translation, ribosomal structure and biogenesis]; Region: TrmN6; COG4123" /db_xref="CDD:443299" regulatory complement(2782784..2782789) /regulatory_class="ribosome_binding_site" /gene="yfiC" /locus_tag="STM2642" /note="putative RBS for yfiC; RegulonDB:STMS1H002735" gene 2782896..2784240 /gene="srmB" /locus_tag="STM2643" /db_xref="GeneID:1254166" regulatory 2782896..2782901 /regulatory_class="ribosome_binding_site" /gene="srmB" /locus_tag="STM2643" /note="putative RBS for srmB; RegulonDB:STMS1H002736" CDS 2782906..2784240 /gene="srmB" /locus_tag="STM2643" /EC_number="2.7.7.-" /note="similar to E. coli ATP-dependent RNA helicase (AAC75629.1); Blastp hit to AAC75629.1 (444 aa), 93% identity in aa 1 - 444" /codon_start=1 /transl_table=11 /product="ATP-dependent RNA helicase" /protein_id="NP_461578.1" /db_xref="GeneID:1254166" /translation="MTVTTFSELELDESLLDALQDKGFTRPTAIQAAAIPPALDGRDV LGSAPTGTGKTAAYLLPALQHLLDFPRKKSGPPRILILTPTRELAMQVADHARELAKH THLDIATITGGVAYMNHAEVFSENQDIVVATTGRLLQYIKEENFDCRAVETLILDEAD RMLDMGFAQDIEHIAGETRWRKQTMLFSATLEGDAIKDFAERLLEDPVEVSANPSTRE RKKIHQWYYRADNFEHKVALLKHLLKQDDATRSIVFVRKRERVHELAETLRLAGINNC YLEGEMAQIKRNEGIKRLTDGRVNVLVATDVAARGIDIPDVSHVINFDMPRSGDTYLH RIGRTGRAGRKGTAISLVEAHDHLLLLKIGRYIEEPLKARVIDELRPTTRAPSEKLTG KPSKKVLAKRAEKKKEKEKEKPRVKKRHRDTKNIGKRRKPSGTKMQEQSSEE" misc_feature 2782915..2784210 /gene="srmB" /locus_tag="STM2643" /note="ATP-dependent RNA helicase SrmB; Provisional; Region: PRK11192" /db_xref="CDD:236877" misc_feature order(2782972..2782977,2782981..2782989,2782996..2782998, 2783050..2783073) /gene="srmB" /locus_tag="STM2643" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350669" gene complement(2784258..2785163) /gene="yfiE" /locus_tag="STM2644" /db_xref="GeneID:1254167" CDS complement(2784258..2785157) /gene="yfiE" /locus_tag="STM2644" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC75630.1); Blastp hit to AAC75630.1 (308 aa), 78% identity in aa 16 - 305" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461579.1" /db_xref="GeneID:1254167" /translation="MDLRRFITLKTVVEEGSFLRASQKLCCTQSTVTFHIQQLEREFS LQLFEKIGRRMCLTNEGKKLMPHIHELTRVMESIREAARQDAEPGGELRVATGETLLA YKMPQVLQRFKLRAPNVRLSLQSLNCYVIRDALLNDEVDLGVFYRVGNDDALTMQQLG KQSLALVASPLLQDADFTQPDQHIPCSFIINEPQCVFRQLFESTLRQRRITLENTIEL WSIESIKQCVAANLGISFLPRFAVERELSTGQLKELPFGAPSLSIMALCAHHAGKAVS PAMQIFMQCMEACFTVEDKKMPG" misc_feature complement(2784285..2785157) /gene="yfiE" /locus_tag="STM2644" /note="DNA-binding transcriptional regulator, LysR family [Transcription]; Region: LysR; COG0583" /db_xref="CDD:440348" regulatory complement(2785158..2785163) /regulatory_class="ribosome_binding_site" /gene="yfiE" /locus_tag="STM2644" /note="putative RBS for yfiE; RegulonDB:STMS1H002737" gene 2785247..2785847 /gene="yfiK" /locus_tag="STM2645" /db_xref="GeneID:1254168" regulatory 2785247..2785252 /regulatory_class="ribosome_binding_site" /gene="yfiK" /locus_tag="STM2645" /note="putative RBS for yfiK; RegulonDB:STMS1H002738" CDS 2785260..2785847 /gene="yfiK" /locus_tag="STM2645" /note="similar to E. coli orf, hypothetical protein (AAC75631.1); Blastp hit to AAC75631.1 (195 aa), 83% identity in aa 1 - 195" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_461580.1" /db_xref="GeneID:1254168" /translation="MTPMLLSAFWTYTLITALTPGPNNILALSAATAHGFRQSIRVLA GMSLGFLVVMLLCAGIAFSLAVIDPAIIHLLSWVGAAYILWLAWKIATSPAADENARP KPVGFWVSFGLQFVNVKIILYGITALSTFVLPQTQALNWVIGVSILLALIGTFGNVCW ALAGHLFQRAFRHYGRQLNIILALLLVYCAVRIFY" misc_feature 2785260..2785844 /gene="yfiK" /locus_tag="STM2645" /note="cysteine/O-acetylserine transporter; Region: PRK10323" /db_xref="CDD:182377" gene complement(2785909..2786307) /gene="yfiD" /locus_tag="STM2646" /db_xref="GeneID:1254169" CDS complement(2785909..2786292) /gene="yfiD" /locus_tag="STM2646" /note="similar to E. coli putative formate acetyltransferase (AAC75632.1); Blastp hit to AAC75632.1 (127 aa), 96% identity in aa 1 - 127" /codon_start=1 /transl_table=11 /product="putative formate acetyltransferase" /protein_id="NP_461581.1" /db_xref="GeneID:1254169" /translation="MITGIQITKAANDDLLNSFWLLDSEKGEARCIVAKSGFAEDEVV AVSKLGEIEYREIPMEVKPEVRVEGGQHLNVNVLRRETLEDAVKHPEKYPQLTIRVSG YAVRFNSLTPEQQRDVIARTFTESL" misc_feature complement(2785912..2786292) /gene="yfiD" /locus_tag="STM2646" /note="autonomous glycyl radical cofactor GrcA; Provisional; Region: PRK11127" /db_xref="CDD:182983" regulatory complement(2786302..2786307) /regulatory_class="ribosome_binding_site" /gene="yfiD" /locus_tag="STM2646" /note="putative RBS for yfiD; RegulonDB:STMS1H002739" gene 2786599..2787300 /gene="ung" /locus_tag="STM2647" /db_xref="GeneID:1254170" regulatory 2786599..2786604 /regulatory_class="ribosome_binding_site" /gene="ung" /locus_tag="STM2647" /note="putative RBS for ung; RegulonDB:STMS1H002740" CDS 2786611..2787300 /gene="ung" /locus_tag="STM2647" /EC_number="3.2.2.-" /note="similar to E. coli uracil-DNA-glycosylase (AAC75633.1); Blastp hit to AAC75633.1 (229 aa), 90% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="uracil-DNA-glycosylase" /protein_id="NP_461582.1" /db_xref="GeneID:1254170" /translation="MATELTWHDVLADEKQQPYFINTLHTVAGERQSGITVYPPQKDV FNAFRFTELGDVKVVILGQDPYHGPGQAHGLAFSVRPGIAPPPSLVNMYKELEASIPG FVRPAHGYLESWARQGVLLLNTVLTVRAGQAHSHASLGWETFTDKVISLINQHREGVV FLLWGSHAQKKGAIIDPQRHHILKAPHPSPLSAHRGFFGCNHFALTNQWLEQHGEKTI DWTPVLPAESE" misc_feature 2786620..2787270 /gene="ung" /locus_tag="STM2647" /note="Uracil-DNA glycosylase [Replication, recombination and repair]; Region: Ung; COG0692" /db_xref="CDD:440456" gene complement(2787416..2788465) /gene="yfiF" /locus_tag="STM2648" /db_xref="GeneID:1254171" CDS complement(2787416..2788453) /gene="yfiF" /locus_tag="STM2648" /EC_number="2.1.1.-" /note="similar to E. coli orf, hypothetical protein (AAC75634.1); Blastp hit to AAC75634.1 (345 aa), 87% identity in aa 1 - 345" /codon_start=1 /transl_table=11 /product="putative tRNA/rRNA methyltransferase" /protein_id="NP_461583.1" /db_xref="GeneID:1254171" /translation="MNDELKNKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPAKSRT DGGRRPARDERNNQSRDRKHETSPWRTVSRAPGDETPEKVDHGGISGKSFIDPEVLRR QRAEETRVYGENACQALFQSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA ELAKASGTEHHGGVCFLIKKRNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSC AHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTS SDRGQALFSTTLPEKMVLVLGREYDYLPEAAREPDDLCVKINGTGNVESLNVSVATGV LLAEWWRQNKA" misc_feature complement(2787419..2788453) /gene="yfiF" /locus_tag="STM2648" /note="putative methyltransferase; Provisional; Region: PRK10864" /db_xref="CDD:236779" regulatory complement(2788460..2788465) /regulatory_class="ribosome_binding_site" /gene="yfiF" /locus_tag="STM2648" /note="putative RBS for yfiF; RegulonDB:STMS1H002741" gene 2788647..2789076 /gene="trxC" /locus_tag="STM2649" /db_xref="GeneID:1254172" regulatory 2788647..2788652 /regulatory_class="ribosome_binding_site" /gene="trxC" /locus_tag="STM2649" /note="putative RBS for trxC; RegulonDB:STMS1H002742" CDS 2788657..2789076 /gene="trxC" /locus_tag="STM2649" /note="similar to E. coli putative thioredoxin-like protein (AAC75635.1); Blastp hit to AAC75635.1 (139 aa), 94% identity in aa 1 - 139" /codon_start=1 /transl_table=11 /product="thioredoxin 2, redox factor" /protein_id="NP_461584.1" /db_xref="GeneID:1254172" /translation="MNTVCTHCQAINRIPDDRLQDAAKCGRCGHELFDGEVINATGET LDKLLKDDLPVVIDFWAPWCGPCRNFAPIFEDVAEERSGKVRFVKVNTEAERELSARF GIRSIPTIMIFKHGQVVDMLNGAVPKAPFDSWLNEAL" misc_feature 2788657..2789073 /gene="trxC" /locus_tag="STM2649" /note="thioredoxin 2; Provisional; Region: PRK10996" /db_xref="CDD:182889" gene 2789149..2789829 /gene="yfiP" /locus_tag="STM2650" /db_xref="GeneID:1254173" CDS 2789149..2789829 /gene="yfiP" /locus_tag="STM2650" /note="similar to E. coli orf, hypothetical protein (AAC75636.1); Blastp hit to AAC75636.1 (240 aa), 88% identity in aa 9 - 234" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461585.1" /db_xref="GeneID:1254173" /translation="MTNNAVLQLRAERLARATRPFLARGNRVRRCQRCLLPLKSCLCD TLTPSQAKSRFCLVMFDTEPMKPSNTGRLIADILPDTAAFQWSRTEPPQALLELVQHP DYQPIVVFPASYAGEAREVISTPPAGKPPLFIMLDGTWPEARKMFRKCPYLDHLPVIS VDLSRLSAYRLREIHAEGQYCTAEVAIALLDLAGDTEAATSLGEHFTRFKTRYLAGKT QHPGNVTA" misc_feature 2789215..2789811 /gene="yfiP" /locus_tag="STM2650" /note="tRNA U47 aminocarboxypropyltransferaseTapT/TuaA/ YfiP, DTW domain [Translation, ribosomal structure and biogenesis]; Region: TapT; COG3148" /db_xref="CDD:442382" gene 2789870..2792543 /gene="yfiQ" /locus_tag="STM2651" /db_xref="GeneID:1254174" regulatory 2789870..2789875 /regulatory_class="ribosome_binding_site" /gene="yfiQ" /locus_tag="STM2651" /note="putative RBS for yfiQ; RegulonDB:STMS1H002743" CDS 2789883..2792543 /gene="yfiQ" /locus_tag="STM2651" /note="similar to E. coli orf, hypothetical protein (AAC75637.1); Blastp hit to AAC75637.1 (886 aa), 92% identity in aa 1 - 886" /codon_start=1 /transl_table=11 /product="putative acetyl-CoA synthetase" /protein_id="NP_461586.1" /db_xref="GeneID:1254174" /translation="MSQQGLEALLRPKSIAVIGASMKPHRAGYLMMRNLLAGGFNGPV LPVTPAWKAVLGVMAWPDIASLPFTPDLAILCTNASRNLALLDALGAKGCKTCIILSA PTSQHEELLACARHYKMRLLGPNSLGLLAPWQGLNASFSPVPIKQGKLAFISQSAAVS NTILDWAQQREMGFSYFIALGDSLDIDVDELLDYLARDSKTSAILLYLEQLSDARRFV SAARSASRNKPILVIKSGRSPAAQRLLNTSAGMDPAWDAAIQRAGLLRVQDTHELFSA VETLSHMRPLRGDRLMIISNGAAPAALALDELWSRNGKLATLSEETCLQLRQALPAHI DIANPLDLCDDASSEHYVKTLDILLASQDFDALMVIHSPSAAAPGTESAHALIETIKR HPRGKFVTLLTNWCGEFSSQEARRLFSEAGLPTYRTPEGTITAFMHMVEYRRNQKQLR ETPALPSNLTSNTAEAHNLLQRAIAEGAASLDTHEVQPILHAYGLHTLPTWIASDSAE AVHIAEQIGYPVALKLRSPDIPHKSEVQGVMLYLRTASEVQQAANAIFDRVKMAWPQA RIHGLLVQSMANRAGAQELRVVVEHDPVFGPLIMLGEGGVEWRPEEQAVVALPPLNMN LARYLVIQGIKQRKIRARSALRPLDIVGLSQLLVQVSNLIVDCPEIQRLDIHPLLASA SEFTALDVTLDIAPFDGDNESRLAVRPYPHQLEEWVEMKNGDRCLFRPILPEDEPQLR QFIAQVTKEDLYYRYFSEINEFTHEDLANMTQIDYDREMAFVAVRRMDNAEEILGVTR AISDPDNVDAEFAVLVRSDLKGLGLGRRLMEKLIAYTRDHGLKRLNGITMPNNRGMVA LARKLGFQVDIQLEEGIVGLTLNLAKCDES" misc_feature 2789883..2791982 /gene="yfiQ" /locus_tag="STM2651" /note="Acyl-CoA synthetase (NDP forming) [Energy production and conversion]; Region: PatZN; COG1042" /db_xref="CDD:440664" misc_feature 2792046..2792480 /gene="yfiQ" /locus_tag="STM2651" /note="Protein N-acetyltransferase, RimJ/RimL family [Translation, ribosomal structure and biogenesis, Posttranslational modification, protein turnover, chaperones]; Region: RimL; COG1670" /db_xref="CDD:441276" gene 2792640..2794013 /gene="pssA" /locus_tag="STM2652" /db_xref="GeneID:1254175" regulatory 2792640..2792645 /regulatory_class="ribosome_binding_site" /gene="pssA" /locus_tag="STM2652" /note="putative RBS for pssA; RegulonDB:STMS1H002744" CDS 2792658..2794013 /gene="pssA" /locus_tag="STM2652" /EC_number="2.7.8.8" /note="CDP-diacylglycerol-serine O-phosphatidyltransferase; similar to E. coli phosphatidylserine synthase; phospholipid synthesis (AAC75638.1); Blastp hit to AAC75638.1 (452 aa), 93% identity in aa 2 - 452" /codon_start=1 /transl_table=11 /product="phosphatidylserine synthase" /protein_id="NP_461587.1" /db_xref="GeneID:1254175" /translation="MLSKFKRNKHQQHLAQLPKISQSVDDVDFFYTPATFRETLLEKI ASATQRICIVALYLEQDDGGKGILDALYAAKRQRPELDVRVLVDWHRAQRGRIGAAAS NTNADWYCRLAQENPGIDVPVYGVPINTREALGVLHFKGFIIDDSVLYSGASLNDVYL HQHDKYRYDRYQLIRNRQMADIMFDWVTQNLMNGRGVNRLDNTQRPKSPEIKNDIRLY RQELRDASYHFQGDANDEQLSVTPLVGLGKSSLLNKTIFHLMPCAEHKLTICTPYFNL PAVLVRNIIQLLRDGKKVEIIVGDKTANDFYIPEDEPFKIIGALPYLYEINLRRFLSR LQYYVNTDQLVVRLWKDDDNTYHLKGMWVDDKWMLLTGNNLNPRAWRLDLENAILIHD PKQELAPQREKELELIRTHTTIVKHYRDLQSIADYPIKVRKLIRRLRRIRIDRLISRI L" misc_feature 2792658..2793950 /gene="pssA" /locus_tag="STM2652" /note="CDP-diacylglycerol--serine O-phosphatidyltransferase; Region: pssA; PRK09428" /db_xref="CDD:236510" gene 2794045..2794381 /gene="yfiM" /locus_tag="STM2653" /db_xref="GeneID:1254176" regulatory 2794045..2794050 /regulatory_class="ribosome_binding_site" /gene="yfiM" /locus_tag="STM2653" /note="putative RBS for yfiM; RegulonDB:STMS1H002745" CDS 2794058..2794381 /gene="yfiM" /locus_tag="STM2653" /note="similar to E. coli orf, hypothetical protein (AAC75639.1); Blastp hit to AAC75639.1 (90 aa), 80% identity in aa 1 - 90" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_461588.1" /db_xref="GeneID:1254176" /translation="MRVLIPFTVLFLSGCSHLANDHWSGQDKAQHFMASAMLSAAGNE YARHQGVSPDRSAAIGLMFSLSLGASKELWDSRPEGSGWSWKDFVWDVAGATTGYAIW QMARY" misc_feature 2794058..2794375 /gene="yfiM" /locus_tag="STM2653" /note="YfiM family lipoprotein; Region: PRK10759" /db_xref="CDD:182705" gene complement(2794378..2795691) /gene="kgtP" /locus_tag="STM2654" /db_xref="GeneID:1254177" CDS complement(2794378..2795679) /gene="kgtP" /locus_tag="STM2654" /note="similar to E. coli alpha-ketoglutarate permease (AAC75640.1); Blastp hit to AAC75640.1 (432 aa), 88% identity in aa 1 - 432" /codon_start=1 /transl_table=11 /product="MFS family alpha-ketoglutarate permease" /protein_id="NP_461589.1" /db_xref="GeneID:1254177" /translation="MAEIIQRIDKNNAEAPEMRRRIWAIVGASSGNLVEWFDFYVYSF CSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADRRGRKASMLISVC MMCMGSLVIACLPGYDTIGTWAPALLLIARLFQGLSVGGEYGTSATYMSEVALEGRKG FFASFQYVTLIGGQLLALLVVVILQQVLDDAELRAWGWRIPFALGAVLAVVALWLRRQ LDETSKHETRALKEAGSLKGLWRNRKAFLMVLGFTAAGSLCFYTFTTYMQKYLVNTAG MHANVASGIMTAALCVFMLVQPLFGALSDKIGRRTSMLCFGALATLFTVPILSALQNV TSPYAAFALVICALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEY VALSLKSVGMESSFFWYVTAMAVLAFLVSLMLHRKGKGLRL" misc_feature complement(2794381..2795679) /gene="kgtP" /locus_tag="STM2654" /note="alpha-ketoglutarate transporter; Provisional; Region: PRK10406" /db_xref="CDD:182433" regulatory complement(2795686..2795691) /regulatory_class="ribosome_binding_site" /gene="kgtP" /locus_tag="STM2654" /note="putative RBS for kgtP; RegulonDB:STMS1H002746" gene complement(2795783..2796245) /locus_tag="STM2655" /db_xref="GeneID:1254178" CDS complement(2795783..2796238) /locus_tag="STM2655" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461590.1" /db_xref="GeneID:1254178" /translation="MAIKPFNYQQDFSSIDFRQQPELYQVGRGEQGVLLVEPYKSEIL PFWRYKDEASAMKSAEQIYQLFEAYRQQDDFVGMDMARKFIQMGYTRARRYANYKGGK KYAEDGSLNTRGNDPIKAAAATVFKGWWDKIRQDEDYLKRKRQHQARWG" misc_feature complement(2795801..2796220) /locus_tag="STM2655" /note="Domain of unknown function (DUF4385); Region: DUF4385; pfam14328" /db_xref="CDD:433870" regulatory complement(2796240..2796245) /regulatory_class="ribosome_binding_site" /locus_tag="STM2655" /note="putative RBS for STM2655; RegulonDB:STMS1H002747" gene complement(2796443..2796564) /gene="rrfG" /locus_tag="STM2656" /db_xref="GeneID:1254179" rRNA complement(2796443..2796564) /gene="rrfG" /locus_tag="STM2656" /product="5S ribosomal RNA" /db_xref="GeneID:1254179" gene complement(2796758..2799767) /gene="rrlG" /locus_tag="STM2657" /db_xref="GeneID:1254180" rRNA complement(2796758..2799767) /gene="rrlG" /locus_tag="STM2657" /product="23S ribosomal RNA" /db_xref="GeneID:1254180" gene complement(2799961..2800033) /gene="gltW" /locus_tag="STM2658" /db_xref="GeneID:1254181" tRNA complement(2799961..2800033) /gene="gltW" /locus_tag="STM2658" /product="tRNA-Sec" /db_xref="GeneID:1254181" gene complement(2800121..2801663) /gene="rrsG" /locus_tag="STM2659" /db_xref="GeneID:1254182" rRNA complement(2800121..2801663) /gene="rrsG" /locus_tag="STM2659" /product="16S ribosomal RNA" /db_xref="GeneID:1254182" gene complement(2802119..2804700) /gene="clpB" /locus_tag="STM2660" /db_xref="GeneID:1254183" CDS complement(2802119..2804692) /gene="clpB" /locus_tag="STM2660" /note="Hsp 100; part of novel multi-chaperone system with DnaK, DnaJ, and GrpE; similar to E. coli heat shock protein (AAC75641.1); Blastp hit to AAC75641.1 (857 aa), 96% identity in aa 1 - 857" /codon_start=1 /transl_table=11 /product="ATP-dependent protease" /protein_id="NP_461591.1" /db_xref="GeneID:1254183" /translation="MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGG SIRPLLTSAGINAGQLRTAIDQALSRLPQVEGTGGDVQPSSELVRVLNLCDKLAQKRG DNFISSELFVLAALESRGTLTDLLKSAGATTANITQAIEQMRGGESVNDQGAEDQRQA LKKYTVDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEG LAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQ KVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAID LIDEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELDD KERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQARRVGDLARMSELQYGKIPE LEKQLEAATQSEGKTMRLLRNKVTDAEIAEVLARWTGIPVSRMLEGEREKLLRMEQEL HSRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFD SDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKA HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYGRMKEM VLGVVSQNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIHISDE ALKLLSANGYDPVYGARPLKRAIQQQIENPLAQQILSGELVPGKVIRLEANDDRIVAV Q" misc_feature complement(2802122..2804692) /gene="clpB" /locus_tag="STM2660" /note="ATP-dependent chaperone ClpB; Region: PRK10865" /db_xref="CDD:182791" regulatory complement(2804695..2804700) /regulatory_class="ribosome_binding_site" /gene="clpB" /locus_tag="STM2660" /note="putative RBS for clpB; RegulonDB:STMS1H002750" gene complement(2804822..2805564) /gene="yfiH" /locus_tag="STM2661" /db_xref="GeneID:1254184" CDS complement(2804822..2805553) /gene="yfiH" /locus_tag="STM2661" /note="similar to E. coli orf, hypothetical protein (AAC75642.1); Blastp hit to AAC75642.1 (243 aa), 87% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461592.1" /db_xref="GeneID:1254184" /translation="MNALIVPQWPLPKGVAACSSTRIGGVSLPPYDSLNLGAHCGDNP EHVEENRKRLFAAGNLPSKPVWLEQVHGKNVLRLTGEPYASKRADASYSNTPGTVCAV MTADCLPVLFCNREGTEVAAAHAGWRGLCEGVLEETVTCFADKPENIIAWLGPAIGPT AFEVGPEVRDAFLAKDAQADSAFLPHGEKFLADIYQLARQRLANTGVEHVYGGDRCTF SESETFFSYRRDKTTGRMASFIWLI" misc_feature complement(2804825..2805553) /gene="yfiH" /locus_tag="STM2661" /note="polyphenol oxidase; Region: PRK10723" /db_xref="CDD:182677" gene complement(2805550..2806542) /gene="rluD" /locus_tag="STM2662" /db_xref="GeneID:1254185" CDS complement(2805550..2806530) /gene="rluD" /locus_tag="STM2662" /EC_number="4.2.1.70" /note="pseudouridines 1911, 1915, 1917 in 23S RNA; similar to E. coli suppressor of ftsH mutation (AAC75643.1); Blastp hit to AAC75643.1 (326 aa), 93% identity in aa 1 - 326" /codon_start=1 /transl_table=11 /product="pseudouridine synthase" /protein_id="NP_461593.1" /db_xref="GeneID:1254185" /translation="MAQRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQR VLVNGQLCDKPKEKVLGGERVAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDL VVHPGAGNPDGTVLNALLHYYPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVE SLQLREITREYEAVAIGHMTAGGTVNEPISRHPTKRTHMSVHPMGKPAVTHYRIMEHF RVHTRLRLRLETGRTHQIRVHMAHITHPLVGDQVYGGRPRPPKGASEEFISTLRKFDR QALHATMLRLYHPVSGIEMEWHAPIPQDMVDLIDAMRADFEDHKDDVDWL" misc_feature complement(2805556..2806530) /gene="rluD" /locus_tag="STM2662" /note="23S rRNA pseudouridine(1911/1915/1917) synthase RluD; Region: rluD; PRK11180" /db_xref="CDD:183020" regulatory complement(2805559..2805564) /regulatory_class="ribosome_binding_site" /gene="yfiH" /locus_tag="STM2661" /note="putative RBS for yfiH; RegulonDB:STMS1H002751" regulatory complement(2806537..2806542) /regulatory_class="ribosome_binding_site" /gene="rluD" /locus_tag="STM2662" /note="putative RBS for rluD; RegulonDB:STMS1H002752" gene 2806644..2807399 /gene="yfiO" /locus_tag="STM2663" /db_xref="GeneID:1254186" regulatory 2806644..2806649 /regulatory_class="ribosome_binding_site" /gene="yfiO" /locus_tag="STM2663" /note="putative RBS for yfiO; RegulonDB:STMS1H002753" CDS 2806662..2807399 /gene="yfiO" /locus_tag="STM2663" /note="similar to E. coli orf, hypothetical protein (AAC75644.1); Blastp hit to AAC75644.1 (245 aa), 96% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_461594.1" /db_xref="GeneID:1254186" /translation="MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQ DGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFMRLNPTH PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFNDFSKLVRSYPNSQYT TDATKRLVFLKDRLAKYEYSVAEYYTARGAWVAVVNRVEGMLRNYPDTQATRDALPLM ENAYRQMQLNAQADKVAKIIAANSKNT" misc_feature 2806662..2807390 /gene="yfiO" /locus_tag="STM2663" /note="outer membrane protein assembly factor BamD; Region: PRK10866" /db_xref="CDD:182792" gene 2807435..2807634 /locus_tag="STM2664" /note="pseudogene; two in-frame stops relative to E. coli b2596" /pseudo /db_xref="GeneID:1254187" gene 2807659..2808009 /gene="yfiA" /locus_tag="STM2665" /db_xref="GeneID:1254188" regulatory 2807659..2807664 /regulatory_class="ribosome_binding_site" /gene="yfiA" /locus_tag="STM2665" /note="putative RBS for yfiA; RegulonDB:STMS1H002755" CDS 2807671..2808009 /gene="yfiA" /locus_tag="STM2665" /note="stabilizes ribosomes against dissociation; similar to E. coli putative yhbH sigma 54 modulator (AAC75646.1); Blastp hit to AAC75646.1 (113 aa), 91% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="ribosome associated factor" /protein_id="NP_461595.1" /db_xref="GeneID:1254188" /translation="MTMNITSKQMEITPAIRQHVADRLAKLEKWQTHLINPHIILSKE PQGFIADATINTPNGHLVASAKHEDMYTAINELINKLERQLNKVQHKGEARRATASVK DASFVEAEEE" misc_feature 2807671..2808006 /gene="yfiA" /locus_tag="STM2665" /note="ribosome-associated translation inhibitor RaiA; Region: PRK10324" /db_xref="CDD:182378" misc_feature order(2807680..2807682,2807686..2807688,2807692..2807694, 2807746..2807748,2807755..2807757,2807773..2807778, 2807788..2807790,2807800..2807802,2807827..2807829, 2807836..2807847,2807854..2807856,2807860..2807862, 2807869..2807871,2807875..2807877,2807884..2807886, 2807926..2807931,2807941..2807943) /gene="yfiA" /locus_tag="STM2665" /note="30S subunit binding site [active]" /db_xref="CDD:238308" gene 2808106..2808160 /locus_tag="STM2666" /db_xref="GeneID:1254189" regulatory 2808106..2808111 /regulatory_class="ribosome_binding_site" /locus_tag="STM2666" /note="putative RBS for STM2666; RegulonDB:STMS1H002756" CDS 2808113..2808160 /locus_tag="STM2666" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_449055.1" /db_xref="GeneID:1254189" /translation="MKLTRFFFAFFFIFP" gene 2808249..2809420 /gene="pheA" /locus_tag="STM2667" /db_xref="GeneID:1254190" regulatory 2808249..2808254 /regulatory_class="ribosome_binding_site" /gene="pheA" /locus_tag="STM2667" /note="putative RBS for pheA; RegulonDB:STMS1H002757" CDS 2808260..2809420 /gene="pheA" /locus_tag="STM2667" /EC_number="4.2.1.51" /EC_number="5.4.99.5" /note="bifuctional; similar to E. coli chorismate mutase-P and prephenate dehydratase (AAC75648.1); Blastp hit to AAC75648.1 (386 aa), 90% identity in aa 1 - 385" /codon_start=1 /transl_table=11 /product="chorismate mutase P" /protein_id="NP_461597.1" /db_xref="GeneID:1254190" /translation="MTSENPLLALRDKISALDEELLALLAKRRALAIEVGQAKLLSHR PVRDIDRERALLDRLIHLGKAHHLDAHYITRLFQLIIEDSVLTQQALLQQHLNNTHPH SARIAFLGPKGSYSHLAARQYAARHFEQFIESGCAKFTDIFHQVETGQADYAVVPIEN TSSGAINDVYDLLQHTSLSIVGEMTVTIDHCVLVSGATDLNTIETVYSHPQPFQQCSK FLSRYPHWKIDYTESTSAAMEKVAQANSPRVAALGSEAGGMLHGLQVLERIAANQTQN ITRFLVLARKAINVSDQVPAKTTLLIATGQQAGALVEALLVLRNHNLIMTKLESRPIH GNPWEEMFYLDIQANLESQVMQSALKELGEITRSMKVLGCYPSENVVPVEPA" misc_feature 2808260..2809417 /gene="pheA" /locus_tag="STM2667" /note="bifunctional chorismate mutase/prephenate dehydratase; Provisional; Region: pheA; PRK10622" /db_xref="CDD:182594" gene complement(2809381..2810296) /locus_tag="STM2668" /db_xref="GeneID:1254191" CDS complement(2809381..2810289) /locus_tag="STM2668" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461598.1" /db_xref="GeneID:1254191" /translation="MTTPHVLFDYVGHLPECPTWSEDESALYWTDILEQEIHRYHPAS GTHSVLVFPEEVGCFALREQGGFIVAMRHAIWLADKNGLLQRKVCDNPSNTKLARFND GGTDGDGRFYAGTFWAPGDYNGALLMRIDHDLTAKVIQCDIQGHNGLAFSPDNQWMYT SDTPNGVIYRTLLDKHGDPGKRELFRHFGEGEGLPDGAAMDSEGCYWSAMFDGWRVAR FSPQEEQLEEYRLPVRCPTMVCFGGADMKTLFITTTRENMSAQEVADYPLSGAIFTLQ VAVAGMKKSRFIERQAGSTGTTFSLG" misc_feature complement(2809525..2810250) /locus_tag="STM2668" /note="SMP-30/Gluconolactonase/LRE-like region; Region: SGL; pfam08450" /db_xref="CDD:462480" regulatory complement(2810291..2810296) /regulatory_class="ribosome_binding_site" /locus_tag="STM2668" /note="putative RBS for STM2668; RegulonDB:STMS1H002758" gene complement(2810347..2811477) /gene="tyrA" /locus_tag="STM2669" /db_xref="GeneID:1254192" CDS complement(2810347..2811468) /gene="tyrA" /locus_tag="STM2669" /EC_number="1.3.1.12" /EC_number="5.4.99.5" /note="bifuctional; similar to E. coli chorismate mutase-T and prephenate dehydrogenase (AAC75649.1); Blastp hit to AAC75649.1 (373 aa), 95% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="chorismate mutase T" /protein_id="NP_461599.1" /db_xref="GeneID:1254192" /translation="MVAELTALRDQIDDVDKALLNLLAKRLELVAKVGEVKSRFGLPI YVPEREASMLASRRAEAEAIGVPPDLIEDVLRRVMRESYSSENDKGFKTLCPSLRPVV IVGGGGQMGRLFEKMLTLSGYQVRILEQQDWPRARDIVADAGMVIVSVPIHVTEQVIA QLPPLPSDCILVDLASVKSGPLQAMLAAHDGPVLGLHPMFGPDSGSLAKQVVVWCDGR QPEAYQWFLEQIQVWGARLHRISAVEHDQNMAFIQALRHFATFAYGLHLAEENVQLEQ LLALSSPIYRLELAMVGRLFAQDPQLYADIIMSSERNLALIKRYYKRFGDAIGLLEQG DKQAFIDSFRKVEHWFGDYARRFQNESRVLLRQANDSRP" misc_feature complement(2810350..2811468) /gene="tyrA" /locus_tag="STM2669" /note="bifunctional chorismate mutase/prephenate dehydrogenase; Provisional; Region: tyrA; PRK11199" /db_xref="CDD:183035" regulatory complement(2811472..2811477) /regulatory_class="ribosome_binding_site" /gene="tyrA" /locus_tag="STM2669" /note="putative RBS for tyrA; RegulonDB:STMS1H002759" gene complement(2811478..2812684) /gene="aroF" /locus_tag="STM2670" /db_xref="GeneID:1254193" CDS complement(2811478..2812548) /gene="aroF" /locus_tag="STM2670" /EC_number="2.5.1.54" /note="DAHP synthetase; tyrosine repressible; phospho-2-dehydro-3-deoxyheptonate aldolase, tyr-sensitive. (SW:AROF_SALTY)" /codon_start=1 /transl_table=11 /product="3-deoxy-D-arabinoheptulosonate-7-phosphate synthase" /protein_id="NP_461600.1" /db_xref="GeneID:1254193" /translation="MQKDALNNVRITDEQVLMTPEQLKAAFPLSLAQEAQIAQSRGII SDIIAGRDPRLLVVCGPCSIHDPETALEYARRFKALAAEVSDSLYLVMRVYFEKPRTT VGWKGLINDPHMDGSFDVEAGLKIARQLLVELVNMGLPLATEALDPNSPQYLGDLFSW SAIGARTTESQTHREMASGLSMPVGFKNGTDGSLATAINAMRAAAQPHRFVGINQAGQ VALLQTQGNPHGHVILRGGKAPNYSPADVAQCEKEMEQAGLRPSLMVDCSHGNSNKDY RRQPAVAESVVAQIKDGNRSIIGLMIESNIHEGNQSSEQPRSEMKYGVSVTDACISWE MTDALLREIHKDLSGQLAVRVA" misc_feature complement(2811493..2812548) /gene="aroF" /locus_tag="STM2670" /note="phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional; Region: PRK12755" /db_xref="CDD:237190" protein_bind complement(2812523..2812539) /gene="aroF" /locus_tag="STM2670" /note="putative binding site for TyrR, RegulonDB: STMS1H000388" /bound_moiety="TyrR" regulatory complement(2812556..2812561) /regulatory_class="ribosome_binding_site" /gene="aroF" /locus_tag="STM2670" /note="putative RBS for aroF; RegulonDB:STMS1H002760" protein_bind complement(2812643..2812659) /gene="aroF" /locus_tag="STM2670" /note="putative binding site for TyrR, RegulonDB: STMS1H000386" /bound_moiety="TyrR" regulatory complement(2812660..2812668) /regulatory_class="minus_10_signal" /gene="aroF" /locus_tag="STM2670" /note="putative -10_signal for aroF; RegulonDB:STMLTH004559" regulatory complement(2812676..2812684) /regulatory_class="minus_35_signal" /gene="aroF" /locus_tag="STM2670" /note="putative -35_signal for aroF; RegulonDB:STMLTH004559" protein_bind complement(2812694..2812710) /note="putative binding site for TyrR, RegulonDB: STMS1H000394" /bound_moiety="TyrR" gene 2812974..2813506 /gene="yfiR" /locus_tag="STM2671" /db_xref="GeneID:1254194" regulatory 2812974..2812979 /regulatory_class="ribosome_binding_site" /gene="yfiR" /locus_tag="STM2671" /note="putative RBS for yfiR; RegulonDB:STMS1H002761" CDS 2812988..2813506 /gene="yfiR" /locus_tag="STM2671" /note="similar to E. coli orf, hypothetical protein (AAC75652.1); Blastp hit to AAC75652.1 (172 aa), 66% identity in aa 1 - 169" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461601.1" /db_xref="GeneID:1254194" /translation="MRFSHRFILLLSLLLASLPLYAQRVTEEEKSVRAIVSGIVSYTH WPALSGPPRLCIFSSARFVRVLSEEADWAFPYQPLVIRTTQEALSARCDGFYFGNESP AYQVELTRHYPVNALLLIAEQNTECIIGSAFCLIINNDEVKFSVNLDSLSHSGVRVNP EVLMLARNQKHE" misc_feature 2813081..2813488 /gene="yfiR" /locus_tag="STM2671" /note="YfiR/HmsC-like; Region: DUF4154; pfam13689" /db_xref="CDD:433405" gene 2813485..2814719 /gene="yfiN" /locus_tag="STM2672" /db_xref="GeneID:1254195" regulatory 2813485..2813490 /regulatory_class="ribosome_binding_site" /gene="yfiR" /locus_tag="STM2671" /note="putative RBS for yfiN; RegulonDB:STMS1H002762" CDS 2813499..2814719 /gene="yfiN" /locus_tag="STM2672" /note="similar to E. coli orf, hypothetical protein (AAC75653.1); Blastp hit to AAC75653.1 (408 aa), 75% identity in aa 2 - 405" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase" /protein_id="NP_461602.1" /db_xref="GeneID:1254195" /translation="MNKEFSLSRPTFKRTLRRISIISVLLTMTLIWLLICVASVLTLK QYAQKNLDLTAATMAHSLEAALVFSDNAAAAETLATLGRQGQFSAAEVRDKNGRTIAS WRYDARAADDKLIGLISHWLFPLPVSQPVWHNGRAIGEVRLVARDSLIGHFIWLSLAV LTGCILLASGIALLLTRYLHNGVVDALQNITEVVHDVRTNRNFSRRVPDERIAEFHLF AQDFNSLLDEMEEWQLRLQAKNAQLLRTALHDPLTGLANRAAFRSCINALMKDNSARS SSALLFLDGDNFKYINDTWGHAAGDRVLIEVAKRLAEFGGSRYQTYRLGGDEFAMVLY DVHSEYEVQRICAALSQAFNRPFELHNGQRITMTLSIGFALTWEHATAEKLQELADRN MYQAKHRRAERSLN" misc_feature 2813499..2814716 /gene="yfiN" /locus_tag="STM2672" /note="diguanylate cyclase DgcN; Region: PRK09966" /db_xref="CDD:182171" gene complement(2814876..2815242) /gene="rplS" /locus_tag="STM2673" /db_xref="GeneID:1254196" CDS complement(2814876..2815223) /gene="rplS" /locus_tag="STM2673" /note="50S ribosomal protein L19. (SW:RL19_SALTY)" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L19" /protein_id="NP_461603.1" /db_xref="GeneID:1254196" /translation="MSNIIKQLEQEQMKQNVPSFRPGDTVEVKVWVVEGTKKRLQAFE GVVIAIRNRGLHSAFTVRKISNGEGVERVFQTHSPVVDSIAVKRRGAVRKAKLYYLRE RTGKAARIKERLN" misc_feature complement(2814879..2815220) /gene="rplS" /locus_tag="STM2673" /note="Ribosomal protein L19 [Translation, ribosomal structure and biogenesis]; Region: RplS; COG0335" /db_xref="CDD:440104" regulatory complement(2815237..2815242) /regulatory_class="ribosome_binding_site" /gene="rplS" /locus_tag="STM2673" /note="putative RBS for rplS; RegulonDB:STMS1H002763" gene complement(2815264..2816045) /gene="trmD" /locus_tag="STM2674" /db_xref="GeneID:1254197" CDS complement(2815264..2816031) /gene="trmD" /locus_tag="STM2674" /note="tRNA (guanine-N1)-methyltransferase. (SW:TRMD_SALTY)" /codon_start=1 /transl_table=11 /product="tRNA (guanine-7-)-methyltransferase" /protein_id="NP_461604.1" /db_xref="GeneID:1254197" /translation="MFIGIVSLFPEMFRAITDYGVTGRAVKKGLLNIQSWSPRDFAHD RHRTVDDRPYGGGPGMLMMVQPLRDAIHAAKAAAGEGAKVIYLSPQGRKLDQAGVSEL ATNQKLILVCGRYEGVDERVIQTEIDEEWSIGDYVLSGGELPAMTLIDSVARFIPGVL GHEASAIEDSFADGLLDCPHYTRPEVLEGMEVPPVLLSGNHAEIRRWRLKQSLGRTWL RRPELLENLALTEEQARLLAEFKTEHAQQQHKHDGMA" misc_feature complement(2815303..2816031) /gene="trmD" /locus_tag="STM2674" /note="tRNA G37 N-methylase TrmD [Translation, ribosomal structure and biogenesis]; Region: TrmD; COG0336" /db_xref="CDD:440105" regulatory complement(2816040..2816045) /regulatory_class="ribosome_binding_site" /gene="trmD" /locus_tag="STM2674" /note="putative RBS for trmD; RegulonDB:STMS1H002764" gene complement(2816076..2816636) /gene="rimM" /locus_tag="STM2675" /db_xref="GeneID:1254198" CDS complement(2816076..2816624) /gene="rimM" /locus_tag="STM2675" /note="16S rrnA processing protein RIMM. (SW:RIMM_SALTY)" /codon_start=1 /transl_table=11 /product="16S rRNA processing protein" /protein_id="NP_461605.1" /db_xref="GeneID:1254198" /translation="MSKQLAAQVPAEPVVLGKMGSSYGIRGWLRVFSSTEDAESIFDY QPWFIQKAGQWQQVQLESWKHHNQDLIIKLKGVDDRDAANLLTNCEIVVDSSQLPALE EGDYYWKDLMGCQVVTAEGYDLGKVIDMMETGSNDVLVIKANLKDAFGIKERLVPFLD GQVIKKVDLATRTIEVDWDPGF" misc_feature complement(2816079..2816597) /gene="rimM" /locus_tag="STM2675" /note="16S rRNA-processing protein RimM; Provisional; Region: rimM; PRK00122" /db_xref="CDD:234650" regulatory complement(2816631..2816636) /regulatory_class="ribosome_binding_site" /gene="rimM" /locus_tag="STM2675" /note="putative RBS for rimM; RegulonDB:STMS1H002765" gene complement(2816643..2816900) /gene="rpsP" /locus_tag="STM2676" /db_xref="GeneID:1254199" CDS complement(2816643..2816891) /gene="rpsP" /locus_tag="STM2676" /note="30S ribosomal protein S16. (SW:RS16_SALTY)" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S16" /protein_id="NP_461606.1" /db_xref="GeneID:1254199" /translation="MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIAS EKEEGTRLDLDRIAHWVGQGATISDRVAALIKEVKKAA" misc_feature complement(2816664..2816891) /gene="rpsP" /locus_tag="STM2676" /note="Ribosomal protein S16 [Translation, ribosomal structure and biogenesis]; Region: RpsP; COG0228" /db_xref="CDD:439998" regulatory complement(2816895..2816900) /regulatory_class="ribosome_binding_site" /gene="rpsP" /locus_tag="STM2676" /note="putative RBS for rpsP; RegulonDB:STMS1H002766" gene complement(2817205..2818579) /gene="ffh" /locus_tag="STM2677" /db_xref="GeneID:1254200" CDS complement(2817205..2818566) /gene="ffh" /locus_tag="STM2677" /note="GTP binding export factor; part of signal recognition particle with 4.5 RNA; similar to E. coli GTP-binding export factor binds to signal sequence, GTP and RNA (AAC75659.1); Blastp hit to AAC75659.1 (453 aa), 98% identity in aa 1 - 453" /codon_start=1 /transl_table=11 /product="4.5S-RNP protein" /protein_id="NP_461607.1" /db_xref="GeneID:1254200" /translation="MFDNLTDRLSRTLRNISGRGRLTEDNVKETLREVRMALLEADVA LPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRSELVAAMGEENQTLNLAAQPPAV VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFF PSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASIKPVETL FVVDAMTGQDAANTAKAFNEALPLTGVVLTKVDGDARGGAALSIRHITGKPIKFLGVG EKTDALEPFHPDRIASRILGMGDVLSLIEDIESKVDRAQAEKLATKLKKGDGFDLNDF LEQLKQMKNMGGMASLMGKLPGMGQIPDNVKSQMDDKVLVRMEAIINSMTLKERAKPE IIKGSRKRRIAQGCGMQVQDVNRLLKQFDDMQRMMKKMKKGGMAKMMRSMKGMMPPGF PGR" misc_feature complement(2817292..2818566) /gene="ffh" /locus_tag="STM2677" /note="Signal recognition particle GTPase [Intracellular trafficking, secretion, and vesicular transport]; Region: Ffh; COG0541" /db_xref="CDD:440307" regulatory complement(2818574..2818579) /regulatory_class="ribosome_binding_site" /gene="ffh" /locus_tag="STM2677" /note="putative RBS for ffh; RegulonDB:STMS1H002767" gene 2818732..2819523 /gene="corE" /locus_tag="STM2678" /db_xref="GeneID:1254201" CDS 2818732..2819523 /gene="corE" /locus_tag="STM2678" /note="heme exporter protein C; CorE (gi|4877800)" /codon_start=1 /transl_table=11 /product="putative cytochrome c-type biogenesis protein" /protein_id="NP_461608.1" /db_xref="GeneID:1254201" /translation="MPVFALLALVAYSFSLALIVPGLLQKNSGWRRMAILSAVIALVC HAVALESRILPGGDSGQNLSLLNVGSLVSLMICTVMTIVASRNRGWLLLPIVYAFALI NLAFATFMPNEYITHLEATPGMMVHIGLSLFSYATLIIAALYALQLAWIDYQLKNKKL AFSNEMPPLMSIERKMFHITQIGVVLLTLTLCTGLFYMHNLFSTENIDKAVLSIVAWF VYIVLLWGHYHEGWRGRRVVWFNVAGAGILTLAYFGSRILQQFVS" misc_feature 2818738..2819517 /gene="corE" /locus_tag="STM2678" /note="ABC-type uncharacterized transport system, permease component [General function prediction only]; Region: YpjD; COG4137" /db_xref="CDD:443312" gene 2819588..2820829 /gene="yfjD" /locus_tag="STM2679" /db_xref="GeneID:1254202" CDS 2819588..2820829 /gene="yfjD" /locus_tag="STM2679" /note="similar to E. coli putative transport protein (AAC75662.1); Blastp hit to AAC75662.1 (227 aa), 94% identity in aa 1 - 227" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461609.3" /db_xref="GeneID:1254202" /translation="MVVISAYFSGSETGMMTLNRYRLRHMAKQGNRSAKRVEKLLRKP DRLISLVLIGNNLVNILASALGTIVGMRLYGDAGVAIATGVLTFVVLVFAEVLPKTIA ALYPEKVAYPSSFLLAPLQILMMPLVWLLNTITRLLMRLMGIKTDIVVSGSLSKEELR TIVHESRSQISRRNQDMLLSVLDLEKVSVDDIMVPRNEIIGIDINDDWKSIERQLTHS PHGRIVLYRDSLDDAISMLRVREAWRLMAEKKEFTKEMMLRAADEIYYVPEGTPLSTQ LIKFQRNKKKVGLVVNEYGDIQGLVTVEDILEEIVGDFTTSMSPTLAEEVTPQNDGSV IIDGTANVREINKAFNWHLPEDDARTVNGVILEALEEIPVAGTRVRIEQYDIDILDVQ ENMIKQVKVVPVKPLRESVAE" misc_feature 2819588..2820826 /gene="yfjD" /locus_tag="STM2679" /note="hypothetical protein; Provisional; Region: PRK11573" /db_xref="CDD:236933" gene 2820944..2821555 /locus_tag="STM2680" /db_xref="GeneID:1254203" regulatory 2820944..2820949 /regulatory_class="ribosome_binding_site" /locus_tag="STM2680" /note="putative RBS for STM2680; RegulonDB:STMS1H002768" CDS 2820950..2821555 /locus_tag="STM2680" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461610.1" /db_xref="GeneID:1254203" /translation="MSEDYVIEWDKNFADDLNVVANVFLSHNPTLWPTIFSQLSTQPE IFEDEDEDEYGLQDVLDCSGGDLGNNELAQAFLQVLRGEGFIHLVDWKGEDEEGELAN FAADRFYELTKNLTDSEELRNLLVEITQEDEISDVCEAGDRYLDEIFERIQTELNKRG FQIFDLNEGSDTYNVVVLPMSEYKKIEDFNTPWLEVQDFLS" gene complement(2821590..2822192) /gene="grpE" /locus_tag="STM2681" /db_xref="GeneID:1254204" CDS complement(2821590..2822180) /gene="grpE" /locus_tag="STM2681" /note="heat shock protein; similar to E. coli phage lambda replication; host DNA synthesis; heat shock protein; protein repair (AAC75663.1); Blastp hit to AAC75663.1 (197 aa), 92% identity in aa 1 - 196" /codon_start=1 /transl_table=11 /product="molecular chaparone" /protein_id="NP_461611.1" /db_xref="GeneID:1254204" /translation="MSSKEQKTPEGQAPEEIIMDQHEEVEAVEPNDSAEQVDPRDEKI ANLEVQLAEAQTRERDTVLRIKAEMENLRRRTEQDIEKAHKFALEKFVNELLPVIDSL DRALEVADKANPDMAAMVEGIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMV ESEEVPAGNVLGIMQKGYTLNGRTIRAAMVTVAKAK" misc_feature complement(2821593..2822180) /gene="grpE" /locus_tag="STM2681" /note="heat shock protein GrpE; Provisional; Region: PRK10325" /db_xref="CDD:182379" misc_feature complement(2821863..2822006) /gene="grpE" /locus_tag="STM2681" /note="2-helical coiled coil [structural motif]; Region: 2-helical coiled coil" /db_xref="CDD:271355" misc_feature complement(order(2821770..2821775,2821791..2821793, 2821800..2821808,2821812..2821817,2821866..2821871, 2821875..2821889,2821893..2821901,2821908..2821913, 2821917..2821922,2821929..2821934,2821941..2821946, 2821953..2821955,2821959..2821967,2821974..2821979, 2821983..2821988,2821995..2822000)) /gene="grpE" /locus_tag="STM2681" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:271355" misc_feature complement(order(2821605..2821607,2821614..2821616, 2821620..2821622,2821632..2821634,2821659..2821661, 2821707..2821721,2821725..2821730,2821734..2821736, 2821860..2821862,2821869..2821871,2821935..2821937, 2821959..2821961)) /gene="grpE" /locus_tag="STM2681" /note="Hsp70 (ATPase domain) interactions [polypeptide binding]; other site" /db_xref="CDD:271355" misc_feature complement(2821770..2821817) /gene="grpE" /locus_tag="STM2681" /note="2-helical coiled coil [structural motif]; Region: 2-helical coiled coil" /db_xref="CDD:271355" gene complement(2822177..2822375) /locus_tag="STM2682" /db_xref="GeneID:2673728" CDS complement(2822177..2822371) /locus_tag="STM2682" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_449071.1" /db_xref="GeneID:2673728" /translation="MCRECGGMTRMPHNADTLEMIIHFSEVLVAKIDDNVSTSLETLN LIPIISEVSEMNAKKTRRNS" regulatory complement(2822187..2822192) /regulatory_class="ribosome_binding_site" /locus_tag="STM2682" /note="putative RBS for grpE; RegulonDB:STMS1H002769" gene 2822288..2823181 /gene="yfjB" /locus_tag="STM2683" /db_xref="GeneID:1254206" regulatory 2822288..2822293 /regulatory_class="ribosome_binding_site" /gene="yfjB" /locus_tag="STM2683" /note="putative RBS for yfjB; RegulonDB:STMS1H002771" CDS 2822303..2823181 /gene="yfjB" /locus_tag="STM2683" /note="similar to E. coli orf, hypothetical protein (AAC75664.1); Blastp hit to AAC75664.1 (292 aa), 96% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="putative kinase" /protein_id="NP_461613.1" /db_xref="GeneID:1254206" /translation="MNNHFKCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIA HELQLKNVPTGTLAEIGQQADLAVVVGGDGNMLGAARTLARYDINVIGINRGNLGFLT DLDPDNALQQLSDVLEGRYISEKRFLLEAQVCQQDRQKRISTAINEVVLHPGKVAHMI EFEVYIDETFAFSQRSDGLIISTPTGSTAYSLSAGGPILTPSLDAITLVPMFPHTLSA RPLVINSSSTIRLRFSHRRSDLEISCDSQIALPIQEGEDVLIRRCDYHLNLIHPKDYS YFNTLSTKLGWSKKLF" misc_feature 2822303..2823178 /gene="yfjB" /locus_tag="STM2683" /note="inorganic polyphosphate/ATP-NAD kinase; Provisional; Region: ppnK; PRK03378" /db_xref="CDD:235122" regulatory complement(2822370..2822375) /regulatory_class="ribosome_binding_site" /locus_tag="STM2682" /note="putative RBS for STM2682; RegulonDB:STMS1H002770" gene 2823254..2824928 /gene="recN" /locus_tag="STM2684" /db_xref="GeneID:1254207" regulatory 2823254..2823259 /regulatory_class="ribosome_binding_site" /gene="recN" /locus_tag="STM2684" /note="putative RBS for recN; RegulonDB:STMS1H002772" CDS 2823267..2824928 /gene="recN" /locus_tag="STM2684" /note="similar to E. coli protein used in recombination and DNA repair (AAC75665.1); Blastp hit to AAC75665.1 (553 aa), 91% identity in aa 1 - 553" /codon_start=1 /transl_table=11 /product="protein used in recombination and DNA repair" /protein_id="NP_461614.1" /db_xref="GeneID:1254207" /translation="MLAQLTISNFAIVRELEIDFQSGMTVITGETGAGKSIAIDALGL CLGGRAEADMVRTGATRADLCARFALKDTPAALRWLEENQLEEGRECLLRRVISSDGR SRGFINGTAVPLSQLRELGQLLIQIHGQHAHQQLTKPEQQKSLLDSYANEAALAQQMA ARYQLWHQSCRDLAHHQQQSQERAARAELLQYQLKELNDFNPQAGEFEQIDEEYKRLA NSGQLLTTSQNALALLADGEDVNLQSQLYSAKQLVSELVGMDSKLSGILDMLEEATIQ LTEASDELRHYCERLDLDPNRLFELEQRIAKQISLARKHHVSPEALPQLYQSLLEEQQ QLDDQADSLETLTLAVNKHHQQALETAQALHQQRQFYAQELGQLITESMHLLSMPHGL FTIDVKFDEHHLSNDGADRVEFKVTTNPGQPLQPIAKVASGGELSRIALAIQVITARK METPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKE TDGAMTETHMQPLDKRARLQELARLLGGSEVTRNTLANAKELLAA" misc_feature 2823267..2824925 /gene="recN" /locus_tag="STM2684" /note="recombination and repair protein; Provisional; Region: PRK10869" /db_xref="CDD:236781" gene 2825061..2825415 /gene="smpA" /locus_tag="STM2685" /db_xref="GeneID:1254208" regulatory 2825061..2825066 /regulatory_class="ribosome_binding_site" /gene="smpA" /locus_tag="STM2685" /note="putative RBS for smpA; RegulonDB:STMS1H002773" CDS 2825077..2825415 /gene="smpA" /locus_tag="STM2685" /note="similar to E. coli small membrane protein A (AAC75666.1); Blastp hit to AAC75666.1 (50 aa), 93% identity in aa 1 - 48" /codon_start=1 /transl_table=11 /product="small membrane protein A" /protein_id="NP_461615.1" /db_xref="GeneID:1254208" /translation="MRCKTLTAAAAVLLMLTAGCSTLERVVYRPDINQGNYLTPTDVA KVRVGMTQQQVAYALGTPMMTDPFGTNTWFYVFRQQPGHENVTQQTLTLTFNSSGVLT NIDNKPALTK" misc_feature 2825077..2825412 /gene="smpA" /locus_tag="STM2685" /note="outer membrane protein assembly factor BamE; Region: PRK11548" /db_xref="CDD:183190" gene complement(2825581..2825881) /gene="yfjF" /locus_tag="STM2686" /db_xref="GeneID:1254209" CDS complement(2825581..2825871) /gene="yfjF" /locus_tag="STM2686" /note="similar to E. coli orf, hypothetical protein (AAC75667.1); Blastp hit to AAC75667.1 (102 aa), 87% identity in aa 7 - 102" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461616.1" /db_xref="GeneID:1254209" /translation="MPDKLVVEVAYALPEKQYLQRVTLEEGATVEEAIRASGLLELRT DIDLAKNKVGIYSRPVKLTDTVQDGDRVEIYRPLIADPKALRRQRAEKSAGR" misc_feature complement(2825584..2825868) /gene="yfjF" /locus_tag="STM2686" /note="RnfH family protein; Region: PRK01777" /db_xref="CDD:234982" gene complement(2825861..2826337) /gene="yfjG" /locus_tag="STM2687" /db_xref="GeneID:1254210" CDS complement(2825861..2826337) /gene="yfjG" /locus_tag="STM2687" /note="similar to E. coli orf, hypothetical protein (AAC75668.1); Blastp hit to AAC75668.1 (158 aa), 88% identity in aa 1 - 157" /codon_start=1 /transl_table=11 /product="putative oligoketide cyclase/lipid transport protein" /protein_id="NP_461617.1" /db_xref="GeneID:1254210" /translation="MVLFTRFMLMGIAMPQISRTALVPYSAEQMYQLVNDVQSYPQFL PGCVGSRVLESSPAQMTAAVDVSKAGISKTFTTRNQLTRNQSILMHLVDGPFKKLIGG WKFTPLSPEACRIEFQLDFEFTNKLIELAFGRIFKELASNMVQAFTVRAKEVYRAG" misc_feature complement(2825864..2826337) /gene="yfjG" /locus_tag="STM2687" /note="type II toxin-antitoxin system RatA family toxin; Region: PRK10724" /db_xref="CDD:182678" misc_feature complement(order(2825897..2825899,2825906..2825914, 2825918..2825926,2825930..2825944,2825975..2825977, 2825981..2825983,2825987..2825989,2825993..2825995, 2826023..2826025,2826029..2826031,2826035..2826040, 2826071..2826073,2826077..2826079,2826095..2826097, 2826101..2826103,2826107..2826109,2826140..2826142, 2826146..2826148,2826152..2826154,2826158..2826160, 2826188..2826190,2826233..2826238,2826242..2826250, 2826275..2826277,2826281..2826283,2826287..2826289)) /gene="yfjG" /locus_tag="STM2687" /note="putative coenzyme Q binding site [chemical binding]; other site" /db_xref="CDD:176855" regulatory complement(2825876..2825881) /regulatory_class="ribosome_binding_site" /gene="yfjF" /locus_tag="STM2686" /note="putative RBS for yfjF; RegulonDB:STMS1H002774" gene 2826477..2826969 /gene="smpB" /locus_tag="STM2688" /db_xref="GeneID:1254211" regulatory 2826477..2826482 /regulatory_class="ribosome_binding_site" /gene="smpB" /locus_tag="STM2688" /note="putative RBS for smpB; RegulonDB:STMS1H002775" CDS 2826487..2826969 /gene="smpB" /locus_tag="STM2688" /note="putative tmRNA-binding protein; SSRA-binding protein. (SW:SSRP_SALTY)" /codon_start=1 /transl_table=11 /product="small protein B" /protein_id="NP_461618.1" /db_xref="GeneID:1254211" /translation="MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSL RAGKANIGDSYVILKDGEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYG RINREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKNAGR " misc_feature 2826511..2826957 /gene="smpB" /locus_tag="STM2688" /note="SsrA-binding protein SmpB; Region: smpB; PRK05422" /db_xref="CDD:235455" misc_feature order(2826577..2826594,2826598..2826603,2826607..2826612, 2826619..2826621,2826670..2826672,2826757..2826774, 2826856..2826858) /gene="smpB" /locus_tag="STM2688" /note="SmpB-tmRNA interface; other site" /db_xref="CDD:187755" gene 2827583..2839057 /locus_tag="STM2689" /note="pseudogene; frameshift; proline/threonine-rich protein" /pseudo /db_xref="GeneID:1254212" gene 2839117..2840531 /locus_tag="STM2690" /db_xref="GeneID:1254213" regulatory 2839117..2839122 /regulatory_class="ribosome_binding_site" /locus_tag="STM2690" /note="putative RBS for STM2690; RegulonDB:STMS1H002777" CDS 2839122..2840531 /locus_tag="STM2690" /note="similar to E. coli putative resistance protein (AAC73673.1); Blastp hit to AAC73673.1 (457 aa), 24% identity in aa 67 - 450" /codon_start=1 /transl_table=11 /product="putative outer membrane efflux protein" /protein_id="NP_461619.1" /db_xref="GeneID:1254213" /translation="MGRVAPVAIVLAFALFHHQPRGAEAPPMITSEGLATDQMLPSLD GSAAELPLSAAAPGNLTLNDAVNRAVNWHPSIREAIGKLLAQNEQIEVAKSKYYPQVS AGVNNGYSNTYTDHGYSPSLVLSVSQMLYDFGKVASQVRAETAGAAQQQANVLLSIDT VAHETANAIVQTQSWQQMVEAAEEQLVALDSIGKLIRQRSDEGATSLSDVVQTEARIE SARSQLAQYQANLDSAKASLMSWLGWNSLNGINNDFPAKLARSCETATPDDRLVPAVL AAWAQANVARANLDYASAQMTPTISLEPSVQHYLNDKYPSHEVLDKTQYSTWVKVEMP LYQGGGLTARRNAASHAVDAAQSTIQRTRLDVRQKLMEARSQAMSLASALQILRRQQQ LSERTRELYQQQYLDLGSRPLLDVLNAEQEVYQARFAELQTESQLHQLQLNCLYNTGA LRQAFALNHRSIQSVEIQP" misc_feature 2839293..2840516 /locus_tag="STM2690" /note="type I secretion outer membrane protein, TolC family; Region: type_I_sec_TolC; TIGR01844" /db_xref="CDD:273829" gene 2840521..2842708 /locus_tag="STM2691" /db_xref="GeneID:1254214" regulatory 2840521..2840526 /regulatory_class="ribosome_binding_site" /locus_tag="STM2690" /note="putative RBS for STM2691; RegulonDB:STMS1H002778" CDS 2840528..2842708 /locus_tag="STM2691" /note="similar to E. coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); Blastp hit to AAC74000.1 (582 aa), 26% identity in aa 20 - 557" /codon_start=1 /transl_table=11 /product="putative ABC transporter transmembrane region" /protein_id="NP_461620.1" /db_xref="GeneID:1254214" /translation="MTRAAPDVEEVLSERALSQWAQAISYVAGHYRVACSPGSIQANA PWLRGKSRTTALTQLARQAGLSFHAPDIDKTAFSQWRLPLVVELRDGQLLVIEHVNGE EAVDVFVIEEEGQRNRLTLSELLPEILYVAALRPLSALKDSRVDRYISRFKPDWMREL VLQDIRPYLPVMVAAFLINVLSLAGIVFSMQVYDRVIPAQSYPTLYVLSFGVLVAVLF GFLLREARTHIMDVLGKRADMRISDRVFGHALRLRNSAIPRSTGSFISQLRELEQIRE MITSSTLATIVDLPFFFLFMIVLAIIAPPLAWIAPVAALLMILPGVALQKKLAVLANQ AAHEATLRNAVLVESVQGLEDIKLMQAENRFLQQWNSYIRITGESGLRTRKLTQGLIS WGMSVQSLVYAAVIMFGAPMVIEGSMTTGAVVAASMLGSRMIAPMANLCGVLARWQQV KAAKMGLDNIMQLPTETQHDDSLIHRDILHGHYLFENAQFRYHNDDQRIPLRLVRLEI MPGERIAILGRNGAGKSTLLQAMAGGLEMIQGDARLDNLSLSHIDMADLRRNIGFLSQ NARLFFGTLRENLTLGAPHANDEQIFDALEVSGGAVFVRRLAKGLDHPIMEGGNGLSG GQRQSLLLARMLLRSPNIVLLDEPSASLDEHTEREFIQRLHQWLGNRTLVVATHRVPI LELVERVVVLKEGQLVMDAPKAQALNADRMQSHRREWKNENQSA" misc_feature 2840585..2842654 /locus_tag="STM2691" /note="type I secretion system ATPase, LssB family; Region: type_I_sec_LssB; TIGR03375" /db_xref="CDD:274550" gene 2842716..2843879 /locus_tag="STM2692" /db_xref="GeneID:1254215" CDS 2842716..2843879 /locus_tag="STM2692" /codon_start=1 /transl_table=11 /product="putative HlyD family secretion protein" /protein_id="NP_461621.1" /db_xref="GeneID:1254215" /translation="MDDPDIQRERAFSGAGRIVLICSLLFLILGIWAWFGRLDEVSTG NGKVIPSSREQVLQSLDGGILAQLTVREGDRVQANQIVARLDPTRLASNVGESAAKYR ASLASSARLTAEVNDLPLAFPAELNGWPDLIAAETRLYKSRRAQLADTEAELRDALAS VNKELAITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYYVQAREALSKANAEV DMLSAILKGREDSVTRLTVRSPVRGIVKNIQVTTIGGVIPPNGEMMEIVPVDDRLLIE TRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETISPDTIQDKVKPEIFYYRVF IRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKPFNRAKEALRER" misc_feature 2842767..2843876 /locus_tag="STM2692" /note="Cation efflux system protein CusB domain 1; Region: CusB_dom_1; cl46872" /db_xref="CDD:481212" gene 2844217..2844316 /gene="10Sa" /locus_tag="STM2693" /db_xref="GeneID:1254216" regulatory 2844217..2844222 /regulatory_class="ribosome_binding_site" /gene="10Sa" /locus_tag="STM2693" /note="putative RBS for 10Sa; RegulonDB:STMS1H002779" tmRNA 2844222..2844316 /gene="10Sa" /locus_tag="STM2693" /product="regulatory RNA" /db_xref="GeneID:1254216" gene complement(2844431..2844666) /locus_tag="STM2694" /db_xref="GeneID:1254217" CDS complement(2844431..2844649) /locus_tag="STM2694" /note="similar to late control gene B in phage; similar to E. coli prophage P2 ogr protein (AAC75143.1); Blastp hit to AAC75143.1 (72 aa), 52% identity in aa 1 - 67" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461622.1" /db_xref="GeneID:1254217" /translation="MMNCPECGHAAHTRSSFQVSATTKERYNQCQNINCGCTFVTHET FVRHIIKPNLISSAPPHPGKGGQGHMSF" misc_feature complement(2844440..2844649) /locus_tag="STM2694" /note="Recombinase zinc beta ribbon domain; Region: Zn_ribbon_recom; cl19592" /db_xref="CDD:450334" regulatory complement(2844661..2844666) /regulatory_class="ribosome_binding_site" /locus_tag="STM2694" /note="putative RBS for STM2694; RegulonDB:STMS1H002780" gene complement(2844718..2845824) /locus_tag="STM2695" /db_xref="GeneID:1254218" CDS complement(2844718..2845818) /locus_tag="STM2695" /note="similar to late control gene in phage" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461623.1" /db_xref="GeneID:1254218" /translation="MNFNSDLLNLNSKSPAFSITIEGKDVTTVMDARLMSLTLTDNRG FEADQLDLELDDADGQIVLPRRGAVIHLALGWKGQPLFPKGAFTVDEIEHSGAPDRLT IRARSADFRETLNTRREKSWHQTTVGEVVKEIAARHNLKVALGQDLTDKALDHMDQTN ESDASFLMKLARQYGAIASVKDGNLLFIRQGQGRTASGKPLPVITITRKAGDGHRFTL ADRGAYTGVIASWLHTREPRKKETTSVKRRRKKATTPKEPEAKQGDYLVGTDENVLVL NRTYANRSNAERAAKMQWERLQRGVASFSLQLAEGRADLYTEMPVKVTGFKQPIDDAE WTITTLTHSVSPDNGFTTSMELEVKIDDLEIE" misc_feature complement(2844727..2845818) /locus_tag="STM2695" /note="tail protein; Provisional; Region: D; PHA02561" /db_xref="CDD:222877" gene complement(2845815..2846307) /locus_tag="STM2696" /db_xref="GeneID:1254219" CDS complement(2845815..2846300) /locus_tag="STM2696" /note="similar to genes in phage phiCTX" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461624.1" /db_xref="GeneID:1254219" /translation="MMMVLGLYVFMLRTVPYQELQYQRSWRHTANSRVNRRPSTQFLG PDNDSLTLSGVLLPEVTGGRLSLLALEQMAELGKAWPLIEGSGTIYGMFVIESLSQTK TEFFASGMPRRIEFTITLKRVDESLSDMFGSLSDQLSNLQDSAASAIGGIKNTVGGLL Q" misc_feature complement(2845914..2846282) /locus_tag="STM2696" /note="Phage protein U [Mobilome: prophages, transposons]; Region: COG3499" /db_xref="CDD:442722" regulatory complement(2845819..2845824) /regulatory_class="ribosome_binding_site" /locus_tag="STM2696" /note="putative RBS for STM2695; RegulonDB:STMS1H002781" gene complement(2846297..2849109) /locus_tag="STM2697" /db_xref="GeneID:1254220" CDS complement(2846297..2849104) /locus_tag="STM2697" /note="similar to orfG protein in phage 186; unknown (gi|2852351)" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461625.1" /db_xref="GeneID:1254220" /translation="MSDNNLRLQVILNAVDKLTRPFRSAQASSKELATAIQQSRARLK ELDAQAGRIDGFRKASAQLAVTGNSLKAAREEAAKLATQFSATNRPTAAQARLLEQAK NRVTELQSKYNGLRQSVQRQRLALNEAGLDTKKLSSAQRELRQNADETRQALDRQQKS LKRLGEQQARMNAVRDQYSRRLEVRDRIAGAGATTTAAGVAMGAPVVAAVKSYASMED AMKGVAKQVNGLRDDNGNRTKQFYDMQDAIKAASEQLPMENGAIDYAALVEGGARMGV TNQDDPYEEQKRDLLAFASTAAKAATAFELPADELAEGLGKIAQLYKVPTRNIEQLGD ALNYLDDNAMSKGGDIINVLQRMGGVADRLDFRKAAALGSTFLSLGAAPEIAASASNA MVRELSIATMQSKRFFEGMNLLQLNPAEIEKQMTTDAMGTIQRVLEKVNNLPQDKRLS AMTMIFGKEFGDDAAKLANNLPELQRQLKLTSGSGANGSMQKESDINKDSLSAQWLLV KTGAQNAFSSLGETLRQPLMDIMGMVKRVTGALRRWVEQNPVLAGTLMKVAAATAAIT VGLGALAVAVAAVLGPLAVIRFGLSMLSVKALPSAAAAATRTGSVLRLLISGPLALLR VALFAVGSLLGALLSPVGLVVAALAGVALVIWKYWQPISAFLGGVVEGFKAAAAPISA AFEPLRPVFQWIGDRVQALWGWFNDLLTPVKSTSEELNSAAAMGRRFGEALAEGLNMV MHPLESLKSGVSWLLEKLGIVSKEAAKAKLPAQVTQQQSATVNSDGKVVLPPGGFPAY AGMYDTGGIIPRGQFGIVGENGPEIVNGPANVTSRRRTAALASVVAGVMGVAATPAEV APLHPFSLPARTYQTQPVKADSPPSVIRYEINAPIHIVAQPGQSAQDIAREVARQLDE RERRARAKARSNFSDQGGYES" misc_feature complement(2846714..2848903) /locus_tag="STM2697" /note="Phage-related tail protein [Mobilome: prophages, transposons]; Region: COG5283" /db_xref="CDD:444094" regulatory complement(2846302..2846307) /regulatory_class="ribosome_binding_site" /locus_tag="STM2696" /note="putative RBS for STM2696; RegulonDB:STMS1H002782" gene complement(2849097..2849219) /locus_tag="STM2698" /db_xref="GeneID:1254221" CDS complement(2849097..2849216) /locus_tag="STM2698" /note="similar to gpE in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461626.1" /db_xref="GeneID:1254221" /translation="MADIATIFHWSPSITDVMPLTEVLAWRYKAIQRSGASDE" misc_feature complement(2849109..2849216) /locus_tag="STM2698" /note="Phage P2 GpE; Region: Phage_P2_GpE; pfam06528" /db_xref="CDD:428990" regulatory complement(2849104..2849109) /regulatory_class="ribosome_binding_site" /locus_tag="STM2698" /note="putative RBS for STM2697; RegulonDB:STMS1H002783" regulatory complement(2849214..2849219) /regulatory_class="ribosome_binding_site" /locus_tag="STM2698" /note="putative RBS for STM2698; RegulonDB:STMS1H002784" gene complement(2849231..2849540) /locus_tag="STM2699" /db_xref="GeneID:1254222" CDS complement(2849231..2849533) /locus_tag="STM2699" /note="similar to genes in P2-like phages; unknown (gi|2852350)" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461627.1" /db_xref="GeneID:1254222" /translation="MSDKLTEKTVKLDTPIMRGKTEITEIVLRKPQSGALRGTRLQAI MDMDVGAMMTVIPRISTPTLTAQEMAELDPADLTALSVEVVTFLLKKSVLAGLPTA" misc_feature complement(2849273..2849506) /locus_tag="STM2699" /note="Phage tail assembly chaperone proteins, E, or 41 or 14; Region: Phage_TAC_7; pfam10109" /db_xref="CDD:431061" regulatory complement(2849535..2849540) /regulatory_class="ribosome_binding_site" /locus_tag="STM2699" /note="putative RBS for STM2699; RegulonDB:STMS1H002785" gene complement(2849588..2850109) /locus_tag="STM2700" /db_xref="GeneID:1254223" CDS complement(2849588..2850103) /locus_tag="STM2700" /note="similar to genes in P2-like phages; unknown (gi|2852349)" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461628.1" /db_xref="GeneID:1254223" /translation="MALPRKLKHLNLFNDGNNWQGIVESLTLPKFTRKFEKYRGGGMP GAVDVDMGLDDGALDTEFSIGGTELLLFKQMGKATVDGIQLRFTGSIQRDDTGEVQAV ELVVRGRHKEVDSGEWKTGESSSTKVSSTNSYAKLTINGEVLYEVDLVNMVEIVGGVD LMEAHRNALGL" misc_feature complement(2849591..2850103) /locus_tag="STM2700" /note="major tail tube protein; Provisional; Region: FII; PHA02600" /db_xref="CDD:164995" regulatory complement(2850104..2850109) /regulatory_class="ribosome_binding_site" /locus_tag="STM2700" /note="putative RBS for STM2700; RegulonDB:STMS1H002786" gene complement(2850113..2851292) /locus_tag="STM2701" /db_xref="GeneID:1254224" CDS complement(2850113..2851285) /locus_tag="STM2701" /note="similar to tail sheath proteins in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461629.1" /db_xref="GeneID:1254224" /translation="MAQDYHHGVRVVEINEGTRPITTVSTAIVGMVCTGDDADASVFP LNKPVLLTDVLTASGKAGESGTLARSLDAIADQAKPVTVVVRVAQGETEAETTSNIIG GVTSDGKKTGMKALLSAQSQLGVKPRILGVPGHDTQAVATELLGVAQSLRGFAYLAAN GCKTVEEAIAYRENFSQREGMLIWPDFINFDTVLKADATAYASARALGLRAKIDEQIG WHKTLSNVGVNGVTGISADVFWDLQDPATDAGLLNKNDVTTLIRKDGFRFWGSRCLSD DPLFAFENYTRTAQVLADTMAEAHMWAVDGVLNPSLARDIIEGLRAKMRSLVNQGYLI GGDCWLDESVNDKDTLKAGKLTIDYDYTPVPPLENLMLRQRITDRYLVDFASRVAA" misc_feature complement(2850122..2851285) /locus_tag="STM2701" /note="major tail sheath protein; Provisional; Region: FI; PHA02560" /db_xref="CDD:164955" regulatory complement(2851287..2851292) /regulatory_class="ribosome_binding_site" /locus_tag="STM2701" /note="putative RBS for STM2701; RegulonDB:STMS1H002787" gene complement(2851388..2851958) /locus_tag="STM2702" /db_xref="GeneID:1254225" CDS complement(2851388..2851945) /locus_tag="STM2702" /note="similar to te-specific recombinases; DNA invertase Pin homolog; similar to E. coli inversion of adjacent DNA; at locus of e14 element (AAC74242.1); Blastp hit to AAC74242.1 (184 aa), 88% identity in aa 3 - 180" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461630.1" /db_xref="GeneID:1254225" /translation="MQIGYVRVSTNDQNTDLQRNALNCAGCELIFEDKISGTKSERPG LKKLLRTLSEGDTLVVWKLDRLGRSMRHLVVLVEELRERGINFRSLTDSIDTSTSMGR FFFHIMGALAEMERELIVERTRAGLAAARAQGRVGGRRPKLTPEQWEQAGRLLAAGET RHRVGLLFDVSISTLYKKFPVNQSR" misc_feature complement(2851568..2851939) /locus_tag="STM2702" /note="Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768" /db_xref="CDD:239737" misc_feature complement(order(2851742..2851744,2851751..2851756, 2851919..2851921,2851925..2851927)) /locus_tag="STM2702" /note="catalytic residues [active]" /db_xref="CDD:239737" misc_feature complement(2851919..2851921) /locus_tag="STM2702" /note="catalytic nucleophile [active]" /db_xref="CDD:239737" misc_feature complement(order(2851601..2851603,2851613..2851618, 2851622..2851627,2851757..2851759)) /locus_tag="STM2702" /note="Presynaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature complement(order(2851595..2851597,2851604..2851606, 2851613..2851618,2851625..2851630,2851637..2851639, 2851721..2851726,2851739..2851741)) /locus_tag="STM2702" /note="Synaptic Antiparallel dimer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature complement(order(2851580..2851582,2851592..2851594, 2851601..2851603,2851613..2851615,2851622..2851627, 2851634..2851639,2851664..2851672)) /locus_tag="STM2702" /note="Synaptic Flat tetramer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature complement(order(2851580..2851582,2851592..2851594, 2851601..2851603,2851613..2851615,2851622..2851624, 2851670..2851672)) /locus_tag="STM2702" /note="Synaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature complement(order(2851577..2851582,2851598..2851600)) /locus_tag="STM2702" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:239737" misc_feature complement(2851415..2851534) /locus_tag="STM2702" /note="Helix-turn-helix domain of Hin and related proteins; Region: HTH_Hin_like; cd00569" /db_xref="CDD:259851" misc_feature complement(order(2851415..2851420,2851424..2851429, 2851523..2851531)) /locus_tag="STM2702" /note="DNA-binding interface [nucleotide binding]; DNA binding site" /db_xref="CDD:259851" gene 2851910..2852994 /locus_tag="STM2703" /db_xref="GeneID:1254226" regulatory 2851910..2851915 /regulatory_class="ribosome_binding_site" /locus_tag="STM2703" /note="putative RBS for STM2703; RegulonDB:STMS1H002789" CDS 2851915..2852994 /locus_tag="STM2703" /note="similar to invertase (pin) in phage E14; unknown (gi|2852344)" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461631.1" /db_xref="GeneID:1254226" /translation="MLTPVHSQFAQQAPSQKAGIMPFTTVFCIFINLGLGETAKQAAG AVQKTGDEMSGKLTLPQTSSFGVNTNNTLGGSSIAIGDNDTGLKGNGDGNLAFMANNV LAGYFNENELQHSKKMLTKNFQALVDNNWPEGAGGFSGQLSSEAPFSVPMVHRQNNDN NFFPLLKGKVSLESGYPVAASFGILTSGNTNFPQIAIHAKTDFDVNDKIWVFDVATGE FRAPGRITATEILLSGKSRVGPDGNLYGDVWGGWLNDFLINNYNRKNTASLGDYGWVR DESTGFIMQWGTLGSSNGTYNFPREFPTSCFAVFVTNTNQQGGSVDNAFGYPVSKSQF FAATKASTDGNVVNGYPVAWFAIGR" regulatory complement(2851953..2851958) /regulatory_class="ribosome_binding_site" /locus_tag="STM2702" /note="putative RBS for STM2702; RegulonDB:STMS1H002788" gene 2852998..2853408 /locus_tag="STM2704" /db_xref="GeneID:1254227" regulatory 2852998..2853003 /regulatory_class="ribosome_binding_site" /locus_tag="STM2704" /note="putative RBS for STM2704; RegulonDB:STMS1H002790" CDS 2853001..2853408 /locus_tag="STM2704" /note="similar to genes in P2-like phages; unknown (gi|2852345)" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461632.1" /db_xref="GeneID:1254227" /translation="MSDYYYSFKEKGFFYKPDTESGDFPTDLIPLTDEHYHGLMQGQV DGKYIEHRKGGPVLVEHREYTPEELVAQAESRKAELLAEAESVIAPLARAVKLKMATD EEIKRLEAWELYSVLVNRVDTSNPDWPDKPVSQ" misc_feature 2853052..2853399 /locus_tag="STM2704" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; cl17077" /db_xref="CDD:450149" gene complement(2853412..2854033) /locus_tag="STM2705" /db_xref="GeneID:1254228" CDS complement(2853412..2854029) /locus_tag="STM2705" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461633.1" /db_xref="GeneID:1254228" /translation="MVYRTRGNGIMKKYQNIKNFRLIDDPVSRGKTQAEINIGAYFLE SEDGQDWYECQSLFSDDTAKIMYDPEGVIWGVVNHPVPQRGNTYAVSMLWPVNMSVAE IDAADCPDDCRGDGSWLYRDGKVLPVPVDYQAKAETTRQKLLNDADNAIKDWRTELTL GIISDENKAALILWMNYINVLKSLDLTDVSDEATFTAIRWPALPQ" misc_feature complement(2853415..2853873) /locus_tag="STM2705" /note="Caudovirales tail fibre assembly protein, lambda gpK; Region: Caudo_TAP; pfam02413" /db_xref="CDD:426761" gene complement(2853999..2855573) /locus_tag="STM2706" /db_xref="GeneID:1254229" CDS complement(2853999..2855573) /locus_tag="STM2706" /note="similar to tail fiber protein in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461634.1" /db_xref="GeneID:1254229" /translation="MSAKFYTLLTEIGAAKLASAAALGVPLKITHMAVGDGGGVLPTP SAQQTALVAEKRRAALNMLYIDPQNSSQIIAEQVIPETEGGWWIREVGLFDETGALIA VGNCPESYKPQLTEGSGRTQTVRMVLITSSTDNITLKIDPAVVLATRKYVDDKALELK VYVDDLMAKHLAAPDPHSQYAQKDSPTLTGIPKVPTPAAGNSTKQIANTEFVASSIAA MVDSAPAALDTLNELAAALGNDPNFATTMINALAGKQPLDNTLTNLSGKDIAGLLTYL GLGETAKQAAGAVQKTGDEMSGKLTLPQTSSFGVNTNNTLGGSSIAIGDNDTGFKQNG DGILDTFANSQHTVRVAPGEMMVLGAIRAGKEKKLSLTSNNNSTMTATFNLWGDANRP TVIELDDDQGWHLYSQRNPDGSIVFTVNGDITANTLRAGGAIYQNNGDIFGSVWGNSW LSLWINNNFVADVQLGAGTSVTTWNNAGSWPNTPGYVVTSVWKDAQGENIDGINYAPL QKRVGNQWYTVQGGTA" misc_feature complement(2854815..2855573) /locus_tag="STM2706" /note="Phage-related tail fiber protein [Mobilome: prophages, transposons]; Region: COG5301" /db_xref="CDD:444101" regulatory complement(2854028..2854033) /regulatory_class="ribosome_binding_site" /locus_tag="STM2705" /note="putative RBS for STM2705; RegulonDB:STMS1H002791" gene complement(2855570..2856180) /locus_tag="STM2707" /db_xref="GeneID:1254230" CDS complement(2855570..2856175) /locus_tag="STM2707" /note="similar to tail fiber protein (gpH) in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461635.1" /db_xref="GeneID:1254230" /translation="MNSLLPPGSSPLERRLAQTCSGISDLQVSLRDLWNPATCPIRFL PYLAWAFSVDRWDESWTESVKRRVVQDAFYIHQHKGTTSAVRRVVEPFGFLIRINEWW QTGETPGTFRLDIGVQDHGITEDTYLELERLISDAKPCSRHMTGMSINMQTSGPYWVG AASYLGEEITVYPYINETIVSGGTAHEGGAVHVIDTMRVNP" misc_feature complement(2855720..2856169) /locus_tag="STM2707" /note="Bacteriophage P2-related tail formation protein [Mobilome: prophages, transposons]; Region: gpI; COG4385" /db_xref="CDD:443511" gene complement(2856168..2857084) /locus_tag="STM2708" /db_xref="GeneID:1254231" CDS complement(2856168..2857076) /locus_tag="STM2708" /note="similar to tail fiber protein (gpI) in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461636.1" /db_xref="GeneID:1254231" /translation="MAVIDLSRLPPPQIVDVPDFETLLAERKAAFVALYPVDEQDAVR RTLALESEPVTKLLQESTYREILLRQRINEAAQAVMVAYSMGNDLEQLAANCNVKRLT VVPADNDAVPPVTAVMEDDEALRQRIPAAFEGLSVAGPTGAYEFHARSADGRVADASA TSPAPAEVVLTVLSREGDGTAVKDLLDVVEKALNSESVRPVADRLTVRSAEIIPYRVE ATIFLYPGPEAEPVMVAAKASLQRYIASQTRLGRDIRRSAIYAALHVEGVQRVELTSP LEDVVLDKTQAASCTEWSVTNGGTDE" misc_feature complement(2856177..2857076) /locus_tag="STM2708" /note="baseplate assembly protein; Provisional; Region: J; PHA02568" /db_xref="CDD:164963" regulatory complement(2856175..2856180) /regulatory_class="ribosome_binding_site" /locus_tag="STM2707" /note="putative RBS for STM2707; RegulonDB:STMS1H002792" gene complement(2857063..2857428) /locus_tag="STM2709" /db_xref="GeneID:1254232" CDS complement(2857063..2857422) /locus_tag="STM2709" /note="similar to gpJ; base plate of tail in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461637.1" /db_xref="GeneID:1254232" /translation="MTLYIGMSRNDGQALADTDHLRQSVRDILLTPQGSRIARREYGS LLFALIDQPQNPALRLQIMSAVYVALNRWEPRLTLDSITINGNFDGSMVVELTGHSNN GAPVSLSISTGADNGSH" misc_feature complement(2857099..2857404) /locus_tag="STM2709" /note="baseplate wedge subunit; Provisional; Region: W; PHA02516" /db_xref="CDD:134016" regulatory complement(2857079..2857084) /regulatory_class="ribosome_binding_site" /locus_tag="STM2709" /note="putative RBS for STM2708; RegulonDB:STMS1H002793" gene complement(2857419..2858001) /locus_tag="STM2710" /db_xref="GeneID:1254233" CDS complement(2857419..2857997) /locus_tag="STM2710" /note="similar to gpV; base plate of tail in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461638.1" /db_xref="GeneID:1254233" /translation="MNAQLTEIMRLITNLIRTGTVTEVDRENWLCRVRVGELETNWIN WLTLRAGGARTWWCPSPDEQVVVLSMGGNLETAFALPAIYSNQFAPPSDSVDGCVTEY PDGGWFEYEPATGRWHVRGIKSMVIEAADNITLKTGEFVVEADTTRINSEVVINGGVT QGGGAMSSNGVVMDKHGHTGVKSGGDTSGGPV" misc_feature complement(2857431..2857976) /locus_tag="STM2710" /note="phage baseplate assembly protein V; Region: phage_P2_V; TIGR01644" /db_xref="CDD:273729" regulatory complement(2857423..2857428) /regulatory_class="ribosome_binding_site" /locus_tag="STM2709" /note="putative RBS for STM2709; RegulonDB:STMS1H002794" regulatory complement(2857996..2858001) /regulatory_class="ribosome_binding_site" /locus_tag="STM2710" /note="putative RBS for STM2710; RegulonDB:STMS1H002795" gene complement(2858066..2858517) /locus_tag="STM2711" /db_xref="GeneID:1254234" CDS complement(2858066..2858512) /locus_tag="STM2711" /note="similar to gpS for completion of tail in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461639.1" /db_xref="GeneID:1254234" /translation="MDELQKVDDWLTALLANLEPAARSRMMRQLAQQLRRTQQQNIRL QRNPDGSGYEPRRVTARSKKGRIKRQMFAKLRTTKYLKTTASADSASVQFDGKVQRIA RVHHYGLRDRVSRKGPEVRYAERRLLGVNEEVETVTRDTLLRWLAG" misc_feature complement(2858072..2858509) /locus_tag="STM2711" /note="Phage virion morphogenesis family; Region: Phage_tail_S; pfam05069" /db_xref="CDD:428290" gene complement(2858505..2858944) /locus_tag="STM2712" /db_xref="GeneID:1254235" CDS complement(2858505..2858936) /locus_tag="STM2712" /note="similar to gpR for completion of tail in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461640.1" /db_xref="GeneID:1254235" /translation="MNKPQSLRSALNKAVAYVRDNPDKLHLFVDNGSLVATGASSMSW EYRYTLNVVIEDFSGDQNLLMAPVLLWLSTSQPDAINNPDLREKLFTFEVDILRNDVC DISMNLQLTERVLVSTDGSVSSVEAVPEPDEPEEMWTVKRG" misc_feature complement(2858547..2858936) /locus_tag="STM2712" /note="P2 phage tail completion protein R (GpR); Region: P2_Phage_GpR; pfam06891" /db_xref="CDD:429177" regulatory complement(2858512..2858517) /regulatory_class="ribosome_binding_site" /locus_tag="STM2712" /note="putative RBS for STM2711; RegulonDB:STMS1H002796" gene complement(2858899..2859190) /locus_tag="STM2713" /db_xref="GeneID:1254236" CDS complement(2858899..2859183) /locus_tag="STM2713" /note="similar to protein from phage CTX" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461641.1" /db_xref="GeneID:1254236" /translation="MRICAAGLILLCLLTLSGCGSVRPSPEVQLTVSGCPRVTQCRLE RSAPRSNGDLNAVLDETEAAWAVCADKVDTIIACQERDSEQTAVLTQRPE" misc_feature complement(2858926..2859180) /locus_tag="STM2713" /note="Rz1-like lysis system protein LysC; Region: P2_Rz1; NF038368" /db_xref="CDD:439661" regulatory complement(2858939..2858944) /regulatory_class="ribosome_binding_site" /locus_tag="STM2713" /note="putative RBS for STM2712; RegulonDB:STMS1H002797" gene complement(2859032..2859465) /locus_tag="STM2714" /db_xref="GeneID:1254237" CDS complement(2859032..2859460) /locus_tag="STM2714" /note="similar to lysis protein (lysB) in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461642.1" /db_xref="GeneID:1254237" /translation="MNRLLAVVLALVLAALGWQSWRLNNASHTIETQGAVLKSKTQEL TKKNSQLIGLSILTETNSREQARLYAAAEQTTALLRSRQHRIEELKRENEDLRRWADT PLPADIIRLRERPALAGGAAYREWLSQSDAVPSGKVSAAQ" misc_feature complement(2859050..2859412) /locus_tag="STM2714" /note="phage lysis regulatory protein, LysB family; Region: phage_LysB; TIGR03495" /db_xref="CDD:274606" regulatory complement(2859185..2859190) /regulatory_class="ribosome_binding_site" /locus_tag="STM2713" /note="putative RBS for STM2713; RegulonDB:STMS1H002798" regulatory complement(2859460..2859465) /regulatory_class="ribosome_binding_site" /locus_tag="STM2714" /note="putative RBS for STM2714; RegulonDB:STMS1H002799" gene complement(2859837..2860351) /locus_tag="STM2715" /db_xref="GeneID:1254238" CDS complement(2859837..2860346) /locus_tag="STM2715" /note="probable prophage lysozyme; similar to E. coli bacteriophage lambda lysozyme homolog (AAC73656.1); Blastp hit to AAC73656.1 (165 aa), 36% identity in aa 35 - 163" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461643.3" /db_xref="GeneID:1254238" /translation="MNPSIVKRCLVVAVLAIAATLPGFQSLHTSVEGLKLIADYEGCR LQPYQCSAGVWTDGIGNTSGVVPGKTITERQAAQGLITNVLRVERALDKCVVQPMPQK VYDAVVSFAFNVGTGNACSSTLVKLLNQRRWADACHQLPRWVYVKGVFNQGLDNRRAR EMTWCLKGV" misc_feature complement(2859849..2860262) /locus_tag="STM2715" /note="P1 lysozyme Lyz-like proteins; Region: lyz_P1; cd16901" /db_xref="CDD:381620" misc_feature complement(order(2860197..2860199,2860218..2860220)) /locus_tag="STM2715" /note="inactive form disulfide linkage [polypeptide binding]; other site" /db_xref="CDD:381620" misc_feature complement(2860218..2860220) /locus_tag="STM2715" /note="active form disulfide linkage [polypeptide binding]" /db_xref="CDD:381620" gene complement(2860327..2860546) /locus_tag="STM2716" /db_xref="GeneID:1254239" CDS complement(2860327..2860542) /locus_tag="STM2716" /note="phage-holin analog protein" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461644.1" /db_xref="GeneID:1254239" /translation="MTLERISAFITYCIAVLLAWLGDLSLKDASTVGGVLIGVLMLAI NWYYKHQSFKLLRGGKISRGEYESFNR" misc_feature complement(2860369..2860524) /locus_tag="STM2716" /note="Bacteriophage P21 holin S; Region: Phage_holin_2_1; cl04868" /db_xref="CDD:446536" regulatory complement(2860346..2860351) /regulatory_class="ribosome_binding_site" /locus_tag="STM2716" /note="putative RBS for STM2715; RegulonDB:STMS1H002800" regulatory complement(2860541..2860546) /regulatory_class="ribosome_binding_site" /locus_tag="STM2716" /note="putative RBS for STM2716; RegulonDB:STMS1H002801" gene complement(2860546..2860756) /locus_tag="STM2717" /db_xref="GeneID:1254240" CDS complement(2860546..2860749) /locus_tag="STM2717" /note="similar to gpX in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461645.1" /db_xref="GeneID:1254240" /translation="MKVRAHQYDTVDALCWRHYGRTQGVTEQVLHANPGLAEYGPFLP HGLQVELPDITASTTAQTVQLWD" misc_feature complement(2860549..2860749) /locus_tag="STM2717" /note="P2-like prophage tail protein X [Mobilome: prophages, transposons]; Region: gpX; COG5004" /db_xref="CDD:444028" gene complement(2860749..2861221) /locus_tag="STM2718" /db_xref="GeneID:1254241" CDS complement(2860749..2861213) /locus_tag="STM2718" /note="similar to gpQ in phage 186" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461646.1" /db_xref="GeneID:1254241" /translation="MKFVAPEQAPEQAEVIKNTPFWPDVDLSEFRSVMRTDGTVTQPR LKQVVLTAISEVNAELYDFRNRQQMLGWRTLAEVPAEMLDGKSERIRHYHNAVFCWAR AVLNERYQDYDATASGVKRGEELAEASGDLWRDARWAISRVQDVPHCTVELI" misc_feature complement(2860752..2861168) /locus_tag="STM2718" /note="Phage head completion protein (GPL); Region: Phage_GPL; pfam05926" /db_xref="CDD:428676" regulatory complement(2860751..2860756) /regulatory_class="ribosome_binding_site" /locus_tag="STM2717" /note="putative RBS for STM2717; RegulonDB:STMS1H002802" regulatory complement(2861216..2861221) /regulatory_class="ribosome_binding_site" /locus_tag="STM2718" /note="putative RBS for STM2718; RegulonDB:STMS1H002803" gene complement(2861307..2861968) /locus_tag="STM2719" /db_xref="GeneID:1254242" CDS complement(2861307..2861960) /locus_tag="STM2719" /note="similar to gpR in phage 186" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461647.1" /db_xref="GeneID:1254242" /translation="MSLSPARQHRLRIQAEQAAREGGSVRRHASGYDLMLLQLAEDRR RLKGIQSTVKKAEIKVELLPKYSAWAEGVLAAGGAQQDDVLMYVMLWRIDAGDYAGAL EIGRHALRHGWVMPLGNRNVQTVLAEEMADAAQSALLAAAGFDADLLLQTLDLTTDLD MPDQSRARLHKAIGAVLSESNPASALNHLTHALQLDPRCGVKKEKQQLERRLRNDSR" misc_feature complement(2861310..2861957) /locus_tag="STM2719" /note="Phage small terminase subunit; Region: Phage_term_smal; cl19614" /db_xref="CDD:450336" regulatory complement(2861963..2861968) /regulatory_class="ribosome_binding_site" /locus_tag="STM2719" /note="putative RBS for STM2719; RegulonDB:STMS1H002804" gene complement(2861964..2863052) /locus_tag="STM2720" /db_xref="GeneID:1254243" CDS complement(2861964..2863046) /locus_tag="STM2720" /note="similar to gpN; major capsid in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461648.1" /db_xref="GeneID:1254243" /translation="MKKKTRFAFNAYLQQLARLNSVEVEELSSKFTVEPSVQQTLEDQ IQQSAAFLTLINITPVTEQSGQLLGLGVGSTIAGTTDTTTKEREPTDPTLMEDVEYKC EQTNFDTVLTYAKLDLWAKFQDFQVRIRNAIVKRQALDRIMIGFNGVKRAKTSNRAEN PLLQDVNKGWLQKIREDAPDHVMGSKTAEDGTTTAEPVKVGPGGKYVNLDAVVMDAVN ELIDVEYQDDDELVVVCGRELLSDKYFPLVNKEQDNSEKIAADMIISQKRMGGLQAVR APFFPANALLITRLDNLSIYWQEDTRRRSVIDNPKRDRIENFESVNEAYVVEDYRCAA LVENIEMSDFTPPAAPVVAAESGNGE" misc_feature complement(2861994..2863046) /locus_tag="STM2720" /note="capsid protein; Provisional; Region: N; PHA02538" /db_xref="CDD:164934" regulatory complement(2863047..2863052) /regulatory_class="ribosome_binding_site" /locus_tag="STM2720" /note="putative RBS for STM2720; RegulonDB:STMS1H002805" gene complement(2863063..2863902) /locus_tag="STM2721" /db_xref="GeneID:1254244" CDS complement(2863063..2863896) /locus_tag="STM2721" /note="similar to gpO; capsid scaffold in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461649.1" /db_xref="GeneID:1254244" /translation="MTVKAKRFRIGVEGATTDGREIQREWLVQMAASYNPTVYTALIN LEHIKSYLPESTFNRYGRVTGLVAEEIQDGPLAGKMALYADIEPTDALVELVKKGQKL FTSMEVSTKFADTGKAYLVGLGATDDPASLGTEMLAFSASAAHNPLANRKQNPENLFS EAVETLIELEEVQDEKPSLFARVTALFTKKEQTDEARFSDVHKAVELVASEQQNLSER TDKSLSEQDKRLSELESSLQEQLAAFAELEQKLSSEDSRKDYRQRAPGGDAPAGTLTN C" misc_feature complement(2863066..2863884) /locus_tag="STM2721" /note="Phage capsid scaffolding protein (GPO) serine peptidase; Region: Phage_GPO; pfam05929" /db_xref="CDD:428677" regulatory complement(2863897..2863902) /regulatory_class="ribosome_binding_site" /locus_tag="STM2721" /note="putative RBS for STM2721; RegulonDB:STMS1H002806" gene 2864035..2865805 /locus_tag="STM2722" /db_xref="GeneID:1254245" regulatory 2864035..2864040 /regulatory_class="ribosome_binding_site" /locus_tag="STM2722" /note="putative RBS for STM2722; RegulonDB:STMS1H002807" CDS 2864039..2865805 /locus_tag="STM2722" /note="similar to gpP; ATP charging in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461650.1" /db_xref="GeneID:1254245" /translation="MNTTLTPADLDPRRQAMLLYFQGYRVARIAEMLGEKVATVHSWK KRDKWGDYGPLDQMQLTTAARYCQLIMKEHKEGKDFKEIDLLARQSERHARIGKFNNG GNEADLNPNVANRNKGPRRQPEKNVFTDEQIEKLEEVFHASMFDYQRHWFEAGKTNRI RNLLKSRQIGATFYFAREALIDALLTGRNQIFLSASKAQAHVFKQYIIDFAKEVDVEL KGDPMVLPNGAALYFLGTNARTAQSYHGNLYLDEYFWIPKFQELRKVASGMAIHKKWR QTYFSTPSSLTHSAYPFWSGALFNRGRAKADKVDIDLTHSNLARGLLCPDGQYRQIVT VEDAVRGGCNLFDLDQLRMEYSPDEYQNLLMCEFIDDLASVFPLSELQACMVDSWEVW TDFQALALRPFGWREVWIGYDPAKGTQNGDSAGCVVMAPPTVPGGKFRILERHQWRGM DFRAQADAIKKLTQQYNVTYIGIDSTGVGHGVYENVKAFFPAVREFVYNPNVKNALVL KAYDIISHRRLEFDAGHTDIAQSFMAIRRATTASGNRPTYEASRSEEASHADLAWATM HALFNEPLQGESANTSNIVEIF" misc_feature 2864054..2865802 /locus_tag="STM2722" /note="terminase ATPase subunit; Provisional; Region: P; PHA02535" /db_xref="CDD:222859" gene 2865798..2866845 /locus_tag="STM2723" /db_xref="GeneID:1254246" regulatory 2865798..2865803 /regulatory_class="ribosome_binding_site" /locus_tag="STM2723" /note="putative RBS for STM2723; RegulonDB:STMS1H002808" CDS 2865805..2866845 /locus_tag="STM2723" /note="similar to gpQ; portal vector protein in phage P2" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461651.1" /db_xref="GeneID:1254246" /translation="MSELEALTSSTPTEATVPKNAGVTAEAFSFGDPIPVLDRRELLD YVECVQMDRWYEPPVSFDGLARTYRAAVHHSSPIAVKRNILTSTFIPHPLLSQQAFSR FVQDYLVFGNAYLEKRTNRLGGILSLEPSLAKYTRRGIDLDTYWFVQYGMTTQPYEFT KGSIFHLMEPDLNQEIYGLPEYLSAIPSALLNESATLFRRKYYINGSHAGFIMYMTDA AQNQEDVNNIRQAMKSAKGPGNFRNLFMYSPNGKKDGIQIIPLSEVAAKDEFLNIKNV SRDDMMAAHRVPPQMMGIIPNNTGGFGDVEKASRVFVRNELIPLQERMKEINEWIGHE VIKFKAYILEVI" misc_feature 2865856..2866836 /locus_tag="STM2723" /note="Phage capsid portal protein XkdE [Mobilome: prophages, transposons]; Region: COG5518" /db_xref="CDD:444269" gene complement(2866931..2868682) /locus_tag="STM2724" /db_xref="GeneID:1254247" CDS complement(2866931..2868682) /locus_tag="STM2724" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461652.3" /db_xref="GeneID:1254247" /translation="MKSSGTIRKIRHFAKGCLMHRIVKAHLDSFVKSYGIENHEEDVQ FELFCNKAMLSSRISMDFEIDDVTTGAGDDGMDGIAIIIDEELCISPEDASSIFSSQR KNHDVDIVFIQSKRSESFDLGDFLKFKASVFRFIDESPYSCLDDIQKNAHEVFDVVIK NVPKIRGGRPSFTAKYVATGIYKSPRELESARKLFIKEIEELGYFCNVSVEFVDRDEL TRTWIDTYSVVNAELPLFSNAPLPKINGIEEAYLAVVKAKDFVSNLLMTEEGSLRNHV FVENVRAFLGIDNPVNASIAETIKDRDAASRFPVLNNGITIVSPDVKLQGSILHLENF QIVNGCQTSNVLYECRDSLDDTMMVNLKVVETLNEDVFSELVRATNSQTKVDETQFYS LRPIIKKVEAYFDTYEGQDGRLYLERRERQFIGRDIPAVRVFSVHMAAKCVAAMFFRR PDLSYRYPKRMYELLAEKIFSNDTKEIVFYAACLTLYRLHLLTSNADIPQNIRKYKWH LMAVVCVLIAGKDIPKFGSKKMDIYCNKIITEMTKHGDKIKATFQRAVDIVLSIDDIT DDRMKRQAILDEMLAKI" misc_feature complement(2867159..2867854) /locus_tag="STM2724" /note="AIPR protein; Region: AIPR; pfam10592" /db_xref="CDD:431380" gene complement(2868694..2868830) /locus_tag="STM2725" /note="pseudogene; in-frame stop following codon 22" /pseudo /db_xref="GeneID:1254248" gene complement(2868896..2869633) /locus_tag="STM2726" /db_xref="GeneID:1254249" CDS complement(2868896..2869627) /locus_tag="STM2726" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461653.1" /db_xref="GeneID:1254249" /translation="MSIRYRLVFRQEKNNRLKMKINNVALTISLAVILTGCVPHASNR NITAIEVVKPAIGQSATAYMGDPIITSATGFKTDVLELGAANGALSSIAAGTYCSEGN GIYRNYHNPQAVALKNLYGQIGNYVDYVSYDAAKNEISPPNGTSYSASEISIKRVPDG LCRVSNSLVKTIEYNGNAGGVMKFTYREFANDMARAAFTTDFSVDSKGSDVIAYKGAK FKVNKADNSSISYTIISGFDKAVTF" regulatory complement(2869628..2869633) /regulatory_class="ribosome_binding_site" /locus_tag="STM2726" /note="putative RBS for STM2726; RegulonDB:STMS1H002809" gene complement(2869687..2869997) /locus_tag="STM2727" /db_xref="GeneID:1254250" CDS complement(2869687..2869992) /locus_tag="STM2727" /note="similar to protein in phage 186, and to retron in E coli; similar to E. coli damage-inducible protein I (AAC74145.1); Blastp hit to AAC74145.1 (81 aa), 29% identity in aa 1 - 77" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461654.1" /db_xref="GeneID:1254250" /translation="MNSWQKSEPTNTTAQWMSSIEVTFMRIEIMIDKEQKISQSTLDA LESELYRNLRPLYPKTVIRIRKGSSNGVELTGLQLDEERKQVMKIMQKVWEDDSWLH" misc_feature complement(2869693..2869881) /locus_tag="STM2727" /note="DinI-like family; Region: DinI; cl11630" /db_xref="CDD:448327" gene complement(2869931..2870126) /locus_tag="STM2728" /db_xref="GeneID:1254251" CDS complement(2869931..2870119) /locus_tag="STM2728" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461655.1" /db_xref="GeneID:1254251" /translation="MQDYFLESLKLQRIDFFLKLVAASECSDEEKGLALQWVSELTDE LMAKIRTHEYNRSMDVIN" regulatory complement(2869992..2869997) /regulatory_class="ribosome_binding_site" /locus_tag="STM2728" /note="putative RBS for STM2727; RegulonDB:STMS1H002810" regulatory complement(2870121..2870126) /regulatory_class="ribosome_binding_site" /locus_tag="STM2728" /note="putative RBS for STM2728; RegulonDB:STMS1H002811" gene complement(2870272..2872708) /locus_tag="STM2729" /db_xref="GeneID:1254252" CDS complement(2870272..2872701) /locus_tag="STM2729" /note="similar to retron in E coli" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461656.1" /db_xref="GeneID:1254252" /translation="MAVSKFTLHNAPTTGGSNEAAVVFPWNTPKKAVNPYLDPAEVAP ESALSNLIALYAADNEQEQLRRETLSDEVWERYFFNESRDPVQREIEQDRLISHAKTA REQQRFNPDLVIIADVGAQPAHISKPLLERIKYFHSLGRAKAYSRYLRETIRPCLERL ERVRDSQVSASFRFMASHDGLEGLLVLPEMNQDQVKRLSTLVAAHMSMCLDAACGDLF VSDDVKPEEIRQAWERVAAEAMRLEVIPPAFEQLRRKKRRRKPVPYELIPPSLARMLC ADWWCRKLWQMRCEWREEQLRAVCLVNKKASPYVSYEAVIHKREQRRKSLEFFRSHEL INEDGDTLDMEDVVNASNSNPAHRRNEMMACVKGLELIAEMRGDCAVFYTITCPSRFH ATLNNGRPNPKWTSATVRQSSDYLVDTFAAFRKAMHKTGLRWYGVRVAEPHHDGTVHW HLLCFMRKKDRRSITALLRKFAIREDREELGTNTGPRFKSELINPRKGTPTSYIAKYI SKNIDGRGLAKEISKETGRPLRDSAEHVSAWASLHRVQQFRFFGIPGRQAYRELRLLA GQAARVQGERKAGAPVLDNPRLDAVLAAADAGCFATYIMKQGGVLVPRKHHLVRTAYE LNDEPSAYGDHGIRIYGIWSPIAEGKICTHAMKWKKVRKAVDVQEAAADQGACAPWTR GNNCPLAENLNQQEKDKSADGGTRTDITRMDDKELHDYLYSMSKKDRRELAARLRLVK PKRRKDYKQRITDHQHQQLVYELKSRGFDGSEKEVDLLLRGGSIPSGAGLRIFYRNQR LKEDDKWRNQY" misc_feature complement(2871157..2872125) /locus_tag="STM2729" /note="Bacteriophage replication gene A protein (GPA); Region: Phage_GPA; pfam05840" /db_xref="CDD:336220" gene complement(2872692..2873556) /locus_tag="STM2730" /db_xref="GeneID:1254253" CDS complement(2872692..2873549) /locus_tag="STM2730" /EC_number="2.1.1.72" /note="similar to retron in E coli; similar to E. coli DNA adenine methylase (AAC76412.1); Blastp hit to AAC76412.1 (278 aa), 46% identity in aa 8 - 266" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461657.1" /db_xref="GeneID:1254253" /translation="MSTILKWAGNKTAIMAELKKHLPEGPRLVEPFAGSCAVMIETDY PHYLVADINPDLINLYQVIKNDVEYFIKEGRYLFEARNDPEAYYKTRQEFNLRHGGAI ERALYFLYLNRHGYRGLCRYNLDGYFNVPYGNYKKPYFPENEIRAFAEKAKRATFICA SYDETLALLQTGDVVYCDPPYDGTFNGYHTAGFTENDQFHLASILERRSSEGHPVIVS NSDTSLTRSLYRDFTRHRITAKRSMGVAAGDSKTAVEIIATKSACWFGVDLASGPDIS VETEVRAWQ" misc_feature complement(2872773..2873549) /locus_tag="STM2730" /note="DNA adenine methylase (dam); Region: dam; TIGR00571" /db_xref="CDD:273146" regulatory complement(2872703..2872708) /regulatory_class="ribosome_binding_site" /locus_tag="STM2730" /note="putative RBS for STM2729; RegulonDB:STMS1H002812" gene complement(2873546..2873781) /locus_tag="STM2731" /db_xref="GeneID:1254254" CDS complement(2873546..2873773) /locus_tag="STM2731" /note="similar to protein in phage 186; similar to E. coli orf, hypothetical protein (AAC73890.1); Blastp hit to AAC73890.1 (88 aa), 42% identity in aa 9 - 76" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461658.1" /db_xref="GeneID:1254254" /translation="MADSMDLVQQRVEEERQRHIHTARNKTPGVSRVLCIDCDAPIPP ARRRAIPGVQCCITCQEIAELKGKHYNGGAV" misc_feature complement(2873558..2873770) /locus_tag="STM2731" /note="DksA-like zinc finger domain containing protein; Region: PHA00080" /db_xref="CDD:222775" regulatory complement(2873551..2873556) /regulatory_class="ribosome_binding_site" /locus_tag="STM2731" /note="putative RBS for STM2730; RegulonDB:STMS1H002813" gene complement(2873773..2874014) /locus_tag="STM2732" /db_xref="GeneID:1254255" CDS complement(2873773..2874006) /locus_tag="STM2732" /note="similar to protein in phage 186" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461659.1" /db_xref="GeneID:1254255" /translation="MRNIETRITKTGPDDAGLNQLLTDARMEERRGRADLMAARLDSL AAHIVSRQLNHTEAAELLRQEAVKIQNEAQEIH" misc_feature complement(2873779..2874006) /locus_tag="STM2732" /note="Protein of unknown function (DUF2732); Region: DUF2732; pfam10809" /db_xref="CDD:431505" regulatory complement(2873776..2873781) /regulatory_class="ribosome_binding_site" /locus_tag="STM2731" /note="putative RBS for STM2731; RegulonDB:STMS1H002814" regulatory complement(2874009..2874014) /regulatory_class="ribosome_binding_site" /locus_tag="STM2732" /note="putative RBS for STM2732; RegulonDB:STMS1H002815" gene complement(2874074..2874422) /locus_tag="STM2733" /db_xref="GeneID:1254256" CDS complement(2874074..2874415) /locus_tag="STM2733" /note="similar to E. coli retron Ec67" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461660.1" /db_xref="GeneID:1254256" /translation="MAIDGPVATVPLSPGKRLDGLNHIAELRAKVFGLNIESELERFI EDMRDQRDVNNKQNERALAAIFYMAKIPAERHSVNISDLTTDEKRELIKAMNHFRAVV SLFPKRLTMPN" misc_feature complement(2874083..2874388) /locus_tag="STM2733" /note="Family of unknown function (DUF5347); Region: DUF5347; pfam17282" /db_xref="CDD:435838" regulatory complement(2874417..2874422) /regulatory_class="ribosome_binding_site" /locus_tag="STM2733" /note="putative RBS for STM2733; RegulonDB:STMS1H002816" gene 2874629..2875093 /locus_tag="STM2734" /db_xref="GeneID:1254257" regulatory 2874629..2874634 /regulatory_class="ribosome_binding_site" /locus_tag="STM2734" /note="putative RBS for STM2734; RegulonDB:STMS1H002817" CDS 2874635..2875093 /locus_tag="STM2734" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461661.1" /db_xref="GeneID:1254257" /translation="MTKQSSEYFQLHYCYYLELMTATLHGRADKLMTAIQIISGTAVI ADTGLEWVFALPVVVIATIQLVWQPAIISERASVQSRQYGELLYAGDELTPELIAQKL KTLHHSDSAPFGSLLNPAYKRAAIACGRSDDTKLSFQEKLFAWFAGCLPR" gene complement(2875041..2875281) /locus_tag="STM2735" /db_xref="GeneID:1254258" CDS complement(2875041..2875274) /locus_tag="STM2735" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461662.1" /db_xref="GeneID:1254258" /translation="MLTREPSFASLLVKQSPAMHYGHGWIYLPCGKKWHPCIELSPRQ QAVRGIGKKRLLQRLSFNVAGILQTRRKAFPGS" misc_feature complement(2875098..2875262) /locus_tag="STM2735" /note="Bacteriophage 186, Fil; Region: Phage_186_Fil; pfam10893" /db_xref="CDD:463194" regulatory complement(2875276..2875281) /regulatory_class="ribosome_binding_site" /locus_tag="STM2735" /note="putative RBS for STM2735; RegulonDB:STMS1H002818" gene complement(2875282..2875797) /locus_tag="STM2736" /db_xref="GeneID:1254259" CDS complement(2875282..2875791) /locus_tag="STM2736" /note="similar to retron in E coli and to protein cII of phages" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461663.1" /db_xref="GeneID:1254259" /translation="MFDYKISKHPHFDEACRVFALRHNMAKLAERAGMKVQTLRNKLN PEQPHQLTPSEIWLLTDLTEDSTLVDGFLAQIHCLPCVPMNEVAKEKLPHYVMSATAE IGRIAAGAVSGDVKTTAGRRDVISSINSVTRLMALAAVSIQARLQANPAMASAVDTVT GLGASFGLI" misc_feature complement(2875357..2875764) /locus_tag="STM2736" /note="Phage regulatory protein CII (CP76); Region: Phage_CP76; pfam06892" /db_xref="CDD:462033" regulatory complement(2875792..2875797) /regulatory_class="ribosome_binding_site" /locus_tag="STM2736" /note="putative RBS for STM2736; RegulonDB:STMS1H002819" gene complement(2875827..2876069) /locus_tag="STM2737" /db_xref="GeneID:1254260" CDS complement(2875827..2876066) /locus_tag="STM2737" /note="similar to protein in phage" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461664.1" /db_xref="GeneID:1254260" /translation="MSTDISIRVPKEMATPAEFAEWEGISRGSVYQKIHHGQLAKYMV KKEKNKGRVSLRYLMYKTDQVRESLGHSNFRVIVG" regulatory complement(2876064..2876069) /regulatory_class="ribosome_binding_site" /locus_tag="STM2737" /note="putative RBS for STM2737; RegulonDB:STMS1H002820" gene 2876177..2876815 /locus_tag="STM2738" /db_xref="GeneID:1254261" regulatory 2876177..2876182 /regulatory_class="ribosome_binding_site" /locus_tag="STM2738" /note="putative RBS for STM2738; RegulonDB:STMS1H002821" CDS 2876183..2876815 /locus_tag="STM2738" /note="similar to E. coli retron" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461665.1" /db_xref="GeneID:1254261" /translation="MSLIKAGNDSGGRDAINRLIKAYNFSSRQQLCEHLEVSKSTMAN RYLRDSFPAEWVIQCALETGISLLWLATGQGDMYACENEERNLKNETSVTVRPLSKIV APSIKHVELKNGELQPSDEILLDSRLLDGDSSNSLFVKTATDSFVVDTSVKQVSNGFW LVDMDGVKSIVKIARVPGNKIVVHQDETSFECSVDDIEAIGRAVKVIKSL" misc_feature 2876222..2876416 /locus_tag="STM2738" /note="Bacteriophage CI repressor helix-turn-helix domain; Region: Phage_CI_repr; pfam07022" /db_xref="CDD:311152" misc_feature 2876495..2876794 /locus_tag="STM2738" /note="Bacteriophage CI repressor C-terminal domain; Region: Phage_CI_C; pfam16452" /db_xref="CDD:435345" gene 2876819..2877844 /locus_tag="STM2739" /db_xref="GeneID:1254262" CDS 2876819..2877844 /locus_tag="STM2739" /note="similar to int protein in phage 186; similar to E. coli prophage DLP12 integrase (AAC73638.1); Blastp hit to AAC73638.1 (387 aa), 41% identity in aa 302 - 363, 24% identity in aa 66 - 280, 35% identity in aa 19 - 50" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461666.1" /db_xref="GeneID:1254262" /translation="MSIRKQPNGKWLCECYPNGRDGKRVRKQFATKGEAIAFENHTMD EVNKKPWLGEKEDRRHLSEVIDQWHSLYGQTLADPKRLMAKLSIICNGLGDPIASELT AGDFTKYREARLKGEVKNEDGVLMSPVKPRTVNLEQRNLSSVFGTLKKLGHWSAPNPL AGLPTFKIAEGELAFLAPEEIKRLLDACADSQSPSLLMIAKVCLATGARWSEAENLQG HQLSKYRITYTKTKGKKNRTVPISQDLYDELPKNRGKLFTPCRKAFERAVKRAGIELP EGQCTHVLRHTFASHFMMNGGNILVLRDILGHADIKMTMVYAHFAPDHLEDAVTKNPL HNLNWKR" misc_feature 2876819..2877826 /locus_tag="STM2739" /note="integrase; Provisional; Region: int; PHA02601" /db_xref="CDD:222904" misc_feature order(2877359..2877364,2877371..2877373,2877419..2877421, 2877428..2877433,2877530..2877532,2877536..2877538, 2877542..2877544,2877677..2877682,2877689..2877694, 2877698..2877703,2877731..2877733,2877761..2877763, 2877770..2877772) /locus_tag="STM2739" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:271177" misc_feature order(2877443..2877445,2877662..2877664,2877671..2877676, 2877767..2877769) /locus_tag="STM2739" /note="active site" /db_xref="CDD:271177" gene 2878160..2879237 /locus_tag="STM2740" /db_xref="GeneID:1254263" regulatory 2878160..2878165 /regulatory_class="ribosome_binding_site" /locus_tag="STM2740" /note="putative RBS for STM2740; RegulonDB:STMS1H002822" CDS 2878173..2879237 /locus_tag="STM2740" /note="similar to int protein in phage CP4-57; similar to E. coli prophage CP4-57 integrase (AAC75670.1); Blastp hit to AAC75670.1 (413 aa), 47% identity in aa 1 - 341" /codon_start=1 /transl_table=11 /product="Fels-2 prophage protein" /protein_id="NP_461667.1" /db_xref="GeneID:1254263" /translation="MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWH FEYYHPVTKKRTKTSLGPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQ NECTLEKVAEQWLKEKKRTSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEH LTPLEEQGILETLRRVISRLNEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHP SELGRLMLALQNASIRKETRCLIEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFM KMNRSHTVPLSKQALRVLQIMEPVSRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGG ELVAHGMRSRQDRRRRSFSP" misc_feature 2878173..2879195 /locus_tag="STM2740" /note="integrase; Provisional; Region: PRK09692" /db_xref="CDD:170049" gene 2879461..2880058 /locus_tag="STM2741" /db_xref="GeneID:1254264" regulatory 2879461..2879466 /regulatory_class="ribosome_binding_site" /locus_tag="STM2741" /note="putative RBS for STM2741; RegulonDB:STMS1H002823" CDS 2879465..2880058 /locus_tag="STM2741" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461668.1" /db_xref="GeneID:1254264" /translation="MPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTI KATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWL KTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPA SDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK" gene 2880448..2881641 /locus_tag="STM2742" /db_xref="GeneID:1254265" CDS 2880448..2881641 /locus_tag="STM2742" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461669.1" /db_xref="GeneID:1254265" /translation="MVNYPYFSVNVLSGSINFVENDKVKLGRNDKCWCKSGLKYKKCH LDRDREMPVSKAEALKFSKSNSQRKACYAPASMHEDCDKRIVQAHTLSKSSSLKAIAD SSNHVMGVVMNLPSLIKNNGRWVPEKIGINQASTFTGFCAVHDRILFSCLENEKFTGT DEQCFALMFRSLSKEIYAKEGGRRSSDFAKNADKGKLQAEQVYIQEFVSLHQSGLNAA ITELNNLKTSLDRILLNRQFSEIESVVFTFSEPLPIAVSSILSPERDFDGTKIQDLND LTVSAEQVCFNAFSSEGKGYVVFSWLGTSAIIRRFVRSLIKVQTDRIFNTLLYFFFTK AENTYSSPEWWDSLSDKQRENIGNMIMSGVDFFDNSTLRVDHSVDYNSAALAEIRYSN SEISS" misc_feature 2880523..>2880642 /locus_tag="STM2742" /note="methionyl aminopeptidase; Region: PRK12318" /db_xref="CDD:183434" misc_feature 2880529..2880582 /locus_tag="STM2742" /note="SEC-C motif; Region: SEC-C; pfam02810" /db_xref="CDD:460704" gene complement(2881976..2882803) /locus_tag="STM2743" /db_xref="GeneID:1254266" CDS complement(2881976..2882803) /locus_tag="STM2743" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461670.1" /db_xref="GeneID:1254266" /translation="MQGLTMDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPD FQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHD ICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMI RSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNAL VKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD" gene 2883247..2883469 /locus_tag="STM2744" /db_xref="GeneID:1254267" regulatory 2883247..2883252 /regulatory_class="ribosome_binding_site" /locus_tag="STM2744" /note="putative RBS for STM2744; RegulonDB:STMS1H002824" CDS 2883254..2883469 /locus_tag="STM2744" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461671.1" /db_xref="GeneID:1254267" /translation="MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPR PVHLSSRLVVFDAAEIRQWQQRRTVIR" misc_feature 2883293..2883445 /locus_tag="STM2744" /note="Prophage CP4-57 regulatory protein (AlpA); Region: Phage_AlpA; pfam05930" /db_xref="CDD:399137" gene 2883505..2885574 /locus_tag="STM2745" /db_xref="GeneID:1254268" CDS 2883505..2885574 /locus_tag="STM2745" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461672.1" /db_xref="GeneID:1254268" /translation="MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVP PMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSP DGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSP LRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNIS TRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLT GGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDG KTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAY MLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIP SDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLAREL LRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAW LNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEE HTLFFILPEGWREICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRL TSRILSI" misc_feature 2884042..2885565 /locus_tag="STM2745" /note="Predicted ATPase domain of Cch-like helicases, DUF927 family [General function prediction only]; Region: COG5519" /db_xref="CDD:444270" gene 2886073..2887360 /locus_tag="STM2746" /db_xref="GeneID:1254269" regulatory 2886073..2886078 /regulatory_class="ribosome_binding_site" /locus_tag="STM2746" /note="putative RBS for STM2746; RegulonDB:STMS1H002825" CDS 2886077..2887360 /locus_tag="STM2746" /codon_start=1 /transl_table=11 /product="putative excinuclease ATPase subunit" /protein_id="NP_461673.1" /db_xref="GeneID:1254269" /translation="MELRRISVNNLFGILNYDIDLGNSETIIITGPNGYGKTMLLKII DNILNKNIDFFFDLRFEEIKFELDTILLCIEKQKNKNVAVTVVDYVNDKKRQEVFTLN KNKELDVDYFDEIYNKLLICDNIDSDPILKSYNHEEILNYYKIKKIKLHKEKHHKSDF LDKSIPNAELTFIKAQRIENIKNEKSAIESQANFLLELIKRAAEESAQISQRLDSTFP ARLFDSINENISSTSINDRLIGIQRKRELFMKFGIIKSEDTFIPRKFSNATLGKEYST VLNLYISDALEKLSPYEELFEKINLFVNLLNEKMLAFKEIKISNEHGFYFQSDNGERI SLSNLSSGEQNQIVIYFDLIFKAKQNSVILIDEPEISLHVAWQKEFLDSIARIQKLNE FSKIIIATHSPQIVNNNWDITYDLFENNNKNMEGQ" misc_feature 2886077..2887339 /locus_tag="STM2746" /note="Predicted ATP-binding protein involved in virulence [General function prediction only]; Region: COG3950" /db_xref="CDD:443150" gene 2887399..2888223 /locus_tag="STM2747" /db_xref="GeneID:1254270" regulatory 2887399..2887404 /regulatory_class="ribosome_binding_site" /locus_tag="STM2747" /note="putative RBS for STM2747; RegulonDB:STMS1H002826" CDS 2887405..2888223 /locus_tag="STM2747" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461674.1" /db_xref="GeneID:1254270" /translation="MLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSG KPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDK FISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNF ITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDF TYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI" misc_feature 2887438..2888118 /locus_tag="STM2747" /note="Protein of unknown function (DUF4435); Region: DUF4435; pfam14491" /db_xref="CDD:433988" gene complement(2888377..2888738) /locus_tag="STM2748" /db_xref="GeneID:1254271" CDS complement(2888377..2888733) /locus_tag="STM2748" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_461675.1" /db_xref="GeneID:1254271" /translation="MPEDGCCPERDNSCMFRCRIAIVIGKRLKISRVRADLTQAELGA LAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHR FKKNNPGSTLILSGNI" misc_feature complement(2888458..2888679) /locus_tag="STM2748" /note="Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Region: HipB; COG1396" /db_xref="CDD:441006" regulatory complement(2888733..2888738) /regulatory_class="ribosome_binding_site" /locus_tag="STM2748" /note="putative RBS for STM2748; RegulonDB:STMS1H002827" gene 2888824..2889112 /locus_tag="STM2749" /db_xref="GeneID:1254272" regulatory 2888824..2888829 /regulatory_class="ribosome_binding_site" /locus_tag="STM2749" /note="putative RBS for STM2749; RegulonDB:STMS1H002828" CDS 2888828..2889112 /locus_tag="STM2749" /note="similar to E. coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); Blastp hit to AAC76220.1 (92 aa), 65% identity in aa 7 - 69" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461676.1" /db_xref="GeneID:1254272" /translation="MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLT RPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT" misc_feature 2888849..2889058 /locus_tag="STM2749" /note="Winged helix-turn-helix DNA-binding; Region: HTH_35; pfam13693" /db_xref="CDD:433408" gene 2889217..2889746 /locus_tag="STM2750" /db_xref="GeneID:1254273" regulatory 2889217..2889222 /regulatory_class="ribosome_binding_site" /locus_tag="STM2750" /note="putative RBS for STM2750; RegulonDB:STMS1H002829" CDS 2889225..2889746 /locus_tag="STM2750" /note="similar to E. coli PTS system, glucitol/sorbitol-specific IIC component, one of two (AAC75744.1); Blastp hit to AAC75744.1 (187 aa), 40% identity in aa 9 - 162" /codon_start=1 /transl_table=11 /product="putative PTS system glucitol/sorbitol-specific enzyme II" /protein_id="NP_461677.1" /db_xref="GeneID:1254273" /translation="MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMK LVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALG TTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITE YLFLRLSRRGNAP" misc_feature 2889225..2889740 /locus_tag="STM2750" /note="Phosphotransferase system sorbitol-specific IIC component [Carbohydrate transport and metabolism]; Region: SrlA; COG3730" /db_xref="CDD:442944" gene 2889736..2890117 /locus_tag="STM2751" /db_xref="GeneID:1254274" regulatory 2889736..2889741 /regulatory_class="ribosome_binding_site" /locus_tag="STM2751" /note="putative RBS for STM2751; RegulonDB:STMS1H002830" CDS 2889743..2890117 /locus_tag="STM2751" /note="similar to E. coli PTS system, glucitol/sorbitol-specific enzyme IIA component (AAC75746.1); Blastp hit to AAC75746.1 (123 aa), 41% identity in aa 3 - 107" /codon_start=1 /transl_table=11 /product="putative PTS enzyme III glucitol" /protein_id="NP_461678.1" /db_xref="GeneID:1254274" /translation="MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEP SFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIH LSGPVPKLHDLHGNLVIEEGRP" misc_feature 2889749..2890075 /locus_tag="STM2751" /note="PTS system glucitol/sorbitol-specific IIA component; Region: PTSIIA_gutA; pfam03829" /db_xref="CDD:427533" gene 2890106..2891094 /locus_tag="STM2752" /db_xref="GeneID:1254275" regulatory 2890106..2890111 /regulatory_class="ribosome_binding_site" /locus_tag="STM2751" /note="putative RBS for STM2752; RegulonDB:STMS1H002831" CDS 2890114..2891094 /locus_tag="STM2752" /note="similar to E. coli PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (AAC75745.1); Blastp hit to AAC75745.1 (319 aa), 45% identity in aa 1 - 314" /codon_start=1 /transl_table=11 /product="putative PTS enzyme III glucitol" /protein_id="NP_461679.1" /db_xref="GeneID:1254275" /translation="MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGA LTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFI SEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTG TAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANS LWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQ VGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF" misc_feature 2890171..2891091 /locus_tag="STM2752" /note="Phosphotransferase system sorbitol-specific IIB component [Carbohydrate transport and metabolism]; Region: SrlE; COG3732" /db_xref="CDD:442946" gene 2891098..2892118 /locus_tag="STM2753" /db_xref="GeneID:1254276" regulatory 2891098..2891103 /regulatory_class="ribosome_binding_site" /locus_tag="STM2753" /note="putative RBS for STM2753; RegulonDB:STMS1H002832" CDS 2891105..2892118 /locus_tag="STM2753" /note="similar to E. coli putative dehydrogenase (AAC74397.1); Blastp hit to AAC74397.1 (351 aa), 30% identity in aa 10 - 151, 28% identity in aa 312 - 346" /codon_start=1 /transl_table=11 /product="putative dehydrogenase" /protein_id="NP_461680.1" /db_xref="GeneID:1254276" /translation="MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDL AMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVR ECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPT QWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLL TMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPN SYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKP EDV" misc_feature 2891105..2892115 /locus_tag="STM2753" /note="Predicted dehydrogenase [General function prediction only]; Region: MviM; COG0673" /db_xref="CDD:440437" gene 2892413..2893615 /locus_tag="STM2754" /db_xref="GeneID:1254277" CDS 2892413..2893615 /locus_tag="STM2754" /codon_start=1 /transl_table=11 /product="putative hexulose 6 phosphate synthase" /protein_id="NP_461681.1" /db_xref="GeneID:1254277" /translation="MLEFHNVPLKTILRRAIMSLPTNFNDILRFFEKDYDTAKEDNAL SARGQFLQLYPLNHLKKMTLDDYVIGKGTASFCACVEVKTRTWANMQGATALKFGIYY GKSKSDPTVRYRFTQKFGDDDSTNKEVFANVKDALLDLIQSGKELDFRAIDENPLSQM FKAKILSLYFPEHFINICSKDHLKEIAMEMGIKEQQFISKYQHLLFKKKLEHKITRNW SNPKYMSFLYAQFIRKDLSSAPAVIVKKPQKRNHPEVNFEEITDNRDLIGKKSEEYAL NWEKNRLIGLGYSKLAEEIDDRRNRPTYGYDFLSFNAPGDERYIEVKSIGRDGKEGAF RFFLSGNELTVSNLSNHSKNYYFYLVQYGKDGEPCNLYVKHAQDLYTNSEMSPCAYVV RFDLEEPA" misc_feature 2893223..2893507 /locus_tag="STM2754" /note="Protein NO VEIN, C-terminal; Region: NOV_C; pfam13020" /db_xref="CDD:463774" gene complement(2893689..2894331) /locus_tag="STM2755" /db_xref="GeneID:1254278" CDS complement(2893689..2894324) /locus_tag="STM2755" /EC_number="4.1.2.-" /note="similar to E. coli probable hexulose-6-phosphate synthase (AAC77153.1); Blastp hit to AAC77153.1 (216 aa), 33% identity in aa 6 - 213" /codon_start=1 /transl_table=11 /product="putative hexulose 6 phosphate synthase" /protein_id="NP_461682.1" /db_xref="GeneID:1254278" /translation="MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAI KAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEA GKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKA RIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH" misc_feature complement(2893704..2894321) /locus_tag="STM2755" /note="3-hexulose-6-phosphate synthase; Region: RuMP_HxlA; TIGR03128" /db_xref="CDD:132172" misc_feature complement(order(2893761..2893766,2893824..2893826, 2893830..2893832,2893923..2893925,2894142..2894144, 2894148..2894150,2894235..2894237,2894301..2894303, 2894307..2894309)) /locus_tag="STM2755" /note="active site" /db_xref="CDD:240077" misc_feature complement(order(2893911..2893919,2893923..2893925, 2893968..2893970,2893989..2893991,2894052..2894054, 2894067..2894069,2894109..2894111,2894127..2894135, 2894202..2894207,2894214..2894216,2894295..2894297)) /locus_tag="STM2755" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:240077" misc_feature complement(order(2894148..2894150,2894235..2894237)) /locus_tag="STM2755" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:240077" regulatory complement(2894326..2894331) /regulatory_class="ribosome_binding_site" /locus_tag="STM2755" /note="putative RBS for STM2755; RegulonDB:STMS1H002833" gene complement(2894348..2894919) /locus_tag="STM2756" /db_xref="GeneID:1254279" CDS complement(2894348..2894911) /locus_tag="STM2756" /note="similar to E. coli orf, hypothetical protein (AAC75480.1); Blastp hit to AAC75480.1 (285 aa), 32% identity in aa 113 - 227" /codon_start=1 /transl_table=11 /product="putative sugar phosphate aminotransferase" /protein_id="NP_461683.1" /db_xref="GeneID:1254279" /translation="METQSVAGVACSDLNQAMSRIDGAALARLEQAIADAKAVFVFGA GRSLLMLKAFAMRLMHIGLKVHVVGDVVTPALQKGDLLLLASASGETASLVNVATKAK QLGGTVALLTIFPESTLGKLAGVAVRIPAYSDKLPDGPENVKGILPGGSLFEEAVMVL GDAMIVNLAQSTGYRLTKGFALHANLE" misc_feature complement(2894351..2894893) /locus_tag="STM2756" /note="6-phospho 3-hexuloisomerase; Region: RuMP_HxlB; TIGR03127" /db_xref="CDD:132171" misc_feature complement(order(2894363..2894374,2894411..2894416, 2894423..2894428,2894447..2894449,2894459..2894461, 2894612..2894614,2894621..2894623,2894633..2894638, 2894690..2894701,2894717..2894719,2894735..2894737, 2894741..2894746,2894753..2894758,2894765..2894767, 2894774..2894776,2894879..2894881)) /locus_tag="STM2756" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:240138" misc_feature complement(order(2894648..2894656,2894771..2894773)) /locus_tag="STM2756" /note="active site" /db_xref="CDD:240138" gene complement(2894911..2895760) /locus_tag="STM2757" /db_xref="GeneID:1254280" CDS complement(2894911..2895753) /locus_tag="STM2757" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461684.1" /db_xref="GeneID:1254280" /translation="MKQLHHSGLPLYLDDDGVMALKPPLNYLGFGRKSAGQMAVVLPE FTEGLRNEPAYDVYRGLSFAEDQERLAADQYQYDITIIMPGTIGKERKKTSGHYHGYN DTRRNTHPEVYEVIKGTAAYILQKSPDFAAAPQELVVDDLIVAVVKEGQSIIVPPNYG HCSINIGDGPLVFSNLAYKPCTVHYDTVQFYHGMACYIVEENGQLCVRKNHYYPRVPR IKFATVKENPHLGITFDMPLYQRYRAAPERFHFLGHVDNYVREIMGMLQYEDDLFPLC QEDA" misc_feature complement(2895109..2895663) /locus_tag="STM2757" /note="Glucose-6-phosphate isomerase (GPI); Region: GPI; pfam06560" /db_xref="CDD:284075" misc_feature complement(order(2895199..2895201,2895205..2895207, 2895223..2895225,2895229..2895231,2895235..2895237, 2895271..2895273,2895415..2895417,2895421..2895423, 2895457..2895459,2895463..2895474,2895514..2895516, 2895583..2895585,2895589..2895591)) /locus_tag="STM2757" /note="active site" /db_xref="CDD:380347" misc_feature complement(order(2895226..2895228,2895232..2895234, 2895277..2895282,2895286..2895288,2895292..2895306, 2895310..2895312,2895319..2895321,2895325..2895327, 2895376..2895378,2895382..2895384,2895412..2895414, 2895418..2895426,2895442..2895447,2895523..2895525, 2895529..2895534,2895568..2895570)) /locus_tag="STM2757" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:380347" regulatory complement(2894914..2894919) /regulatory_class="ribosome_binding_site" /locus_tag="STM2756" /note="putative RBS for STM2756; RegulonDB:STMS1H002834" regulatory complement(2895755..2895760) /regulatory_class="ribosome_binding_site" /locus_tag="STM2757" /note="putative RBS for STM2757; RegulonDB:STMS1H002835" gene complement(2895883..2897432) /locus_tag="STM2758" /db_xref="GeneID:1254281" CDS complement(2895883..2897424) /locus_tag="STM2758" /note="similar to E. coli PTS system, glucose-specific IIBC component (AAC74185.1); Blastp hit to AAC74185.1 (477 aa), 44% identity in aa 44 - 477, 42% identity in aa 4 - 93" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system IIC component" /protein_id="NP_461685.1" /db_xref="GeneID:1254281" /translation="MKRFNLLQMLQSIGRSLMIPIAMLPAAGILLAFGVSFQDPNIVA SLPFLGTDGLVHVLKLMAEAGSAIFANLPLLFAVGVAVGLSDDQGIAGLSAIAGFLIM NVTIGQFLGITPESVAQVRDYTMVLGIPSLQTGVFGGIIIGIIAAWLYKRYYRIQLPS WLEFFSGKRFVPIVTSFAALFVGLVMAVVWPPVQHLINGLSNTMTVQGPGVSAFLFGF VERLLIPFGLNHVWWPTFWLQFGEYVNKAGQVVHGDQLIFFAQLKDQVPITAGTFMAG LTPIKMFCIPAIALAIYRCASPENIARVKGIMLSGAITSIVCGITEPIEFSFLFVAPV LYGIHAVLAGLVFLLMEWFSVHIGLSFSGGLIDYLFFGVLPRAPHWYMVFPVGLVMGA VYYVLFTFAIRRWNLLTPGREVEETAVAQESEQNDLVSGIILAYGGLGNMTSIEACMS RLRIDVTDKTLVDKALLKQLGAAGVVEVGNNIQSVFGMKSDRLKEAIRAIKAHPVSGH CEPIH" misc_feature complement(2895925..2897397) /locus_tag="STM2758" /note="PTS system, glucose-specific IIBC component; Region: PTS-II-BC-glcB; TIGR02002" /db_xref="CDD:273923" regulatory complement(2897427..2897432) /regulatory_class="ribosome_binding_site" /locus_tag="STM2758" /note="putative RBS for STM2758; RegulonDB:STMS1H002836" gene 2897642..2899326 /locus_tag="STM2759" /db_xref="GeneID:1254282" regulatory 2897642..2897647 /regulatory_class="ribosome_binding_site" /locus_tag="STM2759" /note="putative RBS for STM2759; RegulonDB:STMS1H002837" CDS 2897647..2899326 /locus_tag="STM2759" /note="similar to E. coli putative transport protein (AAC73180.1); Blastp hit to AAC73180.1 (551 aa), 27% identity in aa 19 - 545" /codon_start=1 /transl_table=11 /product="putative dipeptide/oligopeptide/nickel ABC-type transport systems, periplasmic component" /protein_id="NP_461686.1" /db_xref="GeneID:1254282" /translation="MSIFEAHFRRLHARYGAGQTHELQMQEIAAIFGCSVRNCRIALK KMHQEKWLDWQPQRGRGKRSRLHLLTSPEKLFSQNVNKLLEKQDYGNVLRFIGNDKYL LDRLSLWRFGVQDKSSETRVRIPYYRNLDPLNPLVPLRRTERHLLRQCLSGLTRYDAV QGRIVPDIAHYWTHNEDFTRWEFWLKSTARFADGCELDASAVQRCLLAASQSPQFAPI FSPIKTITADAPWHLVIETHHPVRRLDCLLATQPTMLFDYQHGHIRCTGAFHLQEHSD NFMVLRRNQHWHQARPGLDEITIFTWAPEHISMSFIPLLRGEEVQDDRPLNERSLEQS CCFVLLDGDGAFADEAGRRFINYLLQPVELLSQTQLPDEYARILSVAQGMLPQWNHRP VDFGGITAPFNLRQPVIISTFQQPELVELAGAIRRLLERWHIRAEIRIDAFDHFNNQL RPPADIWLSNFMLDTLSVPAFLEWLASTALFTRLPESQRQNLNALLPTILNSDDEQAF ATIAAFFHEMTHQRYVIPLLHHWMEFATEKSFTWRDLNTLGWPDFSQLWLE" misc_feature 2897665..2899323 /locus_tag="STM2759" /note="DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a periplasmic-type solute-binding domain [Transcription]; Region: SgrR; COG4533" /db_xref="CDD:443600" gene 2900435..2901318 /locus_tag="STM2760" /db_xref="GeneID:1254283" regulatory 2900435..2900440 /regulatory_class="ribosome_binding_site" /locus_tag="STM2760" /note="putative RBS for STM2760; RegulonDB:STMS1H002838" CDS 2900443..2901318 /locus_tag="STM2760" /codon_start=1 /transl_table=11 /product="putative integrase" /protein_id="NP_461687.1" /db_xref="GeneID:1254283" /translation="MSRLAQDMKKLAHRAGGSHKTVHDREQMAQRFARHLLAQNIQVT STCQLKARHIAGYIHEWLAQGISLRTLQNEMAMVRSILAEAGRTQLSQSELISNQSLG ISGASCDGTHRAIPDALYHQVLDRVHHIDAGLAASLQLARVMGLRGQEAVQCCQSLKT WDKQLEKGAERLPVIFGTKGGRPRMTQVTDREAVRQAVKEALGIAGERNGHLIDKPDL KSAMDYWHNHLRDTGLTGEYSPHSLRYAWAQDAIRYYEEQGLSHKEALAVTSTDLGHG DGRGIYIEQVYGYTD" misc_feature 2900443..2900712 /locus_tag="STM2760" /note="Phage integrase, N-terminal; Region: Phage_int_SAM_2; pfam12834" /db_xref="CDD:432819" misc_feature 2900746..2901192 /locus_tag="STM2760" /note="Region: Integrase_1; pfam12835" /db_xref="CDD:432820" gene 2901484..2903358 /locus_tag="STM2761" /db_xref="GeneID:1254284" CDS 2901484..2903358 /locus_tag="STM2761" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461688.1" /db_xref="GeneID:1254284" /translation="MKISYLKSSPSMIEVLKNNYEAFIIQNYKFNHLGLFHDEDSIYA VIQNYKESNTTLDEIQELYNYRFKTAGVPGPTFTEEVKDNYIKIDLRNTYEKVSLFGQ PFNAFEFNNNIRIAIPSKFHPFHVDMKWSDNSFTFTFNKELTPNDIDEIILICESLGF YGYKYNIKTDHELPDYNHQIKKSNTQGNLTLVASQYLRNNQPKEILEKYEEDQDFWTE KRANIFSDVNLTKDECLIDSFRKSQNRCFVDASVFPRNNIREYISLYDTVIIAIPLAD SPNSQSFYDIFKISKIELLELVRRGRIKFVAFQNLQRYDSNFLADVLSVDPECVLFSR RLAAATLLAIREKTGLFGFAFDSSTQYNLLKECYNSKVDALKILAESLSENIAFFEYG INQRGALGISQFCGASFAAQIYKSRGRDYGIELMTSAMSLEFSLGLGAHHFPFEHTGY SEVNACKILNGIYNGVQQSQNELREMEIQTLLSNIFTINNDMNVLELDDILSKYSRRM IPQILQEYAHLTPEELSFKIYSLNKDIKAIEKRKQNLSILDLSGFAPVVAGAVMEYKG LSGAGYIALLPWIFKLLKVTTNNSKIFSNEIFSNLEALTLNTPRNTMLVHKIRQDMPK " gene complement(2903618..2904901) /locus_tag="STM2762" /db_xref="GeneID:1254285" CDS complement(2903618..2904901) /locus_tag="STM2762" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461689.1" /db_xref="GeneID:1254285" /translation="MLIIIALLWCKKDIRDSFYQLIKTFFHKQILTVLGFAVVWTSIC IVLFYEIGVWSTDNLKTTLVWVITYAFVTIFETHKIKSSKYYFKSQIKETIGLSALLT FILELQSFSFAIEFIIYPIMLFLGLLAVVANTKKETEKIGATIKVVLGVFVIFYFAHS FFVSIMSPSVTFSWANLTELLTPVLLSFSFMPFIYMLYLYQAYETKLLGLKIYFDDEA LFNYAKKLAICFFRTDLDALNRWVRNIHINEIKTKEGIKASLKDVKLRKKIESNPPEV DNKYGWSPFLAKDFLVGKGVDTNDYHFSFDTWISCSHMIEIGNDGLFRDSVAYYLYGD EYAAKKLKLRANINNSPISNCSKNTISLLAEELISKALGDDDFNINELFSKIPVMIKK DNRYVSITKEDFASQNGGYTLEVVIEIEGYSSKDH" gene 2905473..2906075 /locus_tag="STM2763" /db_xref="GeneID:2673753" regulatory 2905473..2905478 /regulatory_class="ribosome_binding_site" /locus_tag="STM2763" /note="putative RBS for STM2763; RegulonDB:STMS1H002839" CDS 2905479..2906075 /locus_tag="STM2763" /note="similar to E. coli prophage CP4-57 integrase (AAC75670.1); Blastp hit to AAC75670.1 (413 aa), 47% identity in aa 1 - 185" /codon_start=1 /transl_table=11 /product="putative integrase" /protein_id="NP_449149.1" /db_xref="GeneID:2673753" /translation="MAKIAKKLTDTEIKSTKPADKEINLFDGDGLILRIAPLAKGGKK NWYFRYAVPVTKKRTKVSLGTYPHLTLAKARALRDEYLSLLANGIDPLVHNTQKANAL KDATEHTFQAVAKKWLDEKVKTSGISRDHANDIWRSLERNIFPGLGNVPINEIRPKLL KQHLDPIEQRGVLETLRRLISRLNEIFRWAATEELTRR" misc_feature 2905479..>2906048 /locus_tag="STM2763" /note="integrase; Provisional; Region: PRK09692" /db_xref="CDD:170049" gene complement(2906456..2906923) /locus_tag="STM2764" /db_xref="GeneID:2673748" CDS complement(2906456..2906923) /locus_tag="STM2764" /codon_start=1 /transl_table=11 /product="putative integrase core domain protein" /protein_id="NP_449150.1" /db_xref="GeneID:2673748" /translation="MQAAAERYPRYGFPKLFQVLRRQGYMWNHKRIHRIYCLLKLDFR RKGKQRLPVRNPSPLATPEALNQSWSVDFMHDALVCGRRFRTFNVVDDFNREALSIEI DLNLPALRVVRVLDRIAANRGYPVMLRMDNGPEFISLALAEWAEQHAVKLEFI" misc_feature complement(2906459..>2906920) /locus_tag="STM2764" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(2907070..2907343) /locus_tag="STM2765" /db_xref="GeneID:1254288" CDS complement(2907070..2907336) /locus_tag="STM2765" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_461692.1" /db_xref="GeneID:1254288" /translation="MRKARFTEHQIIAVIKSVEAGRTVKDACREAGISEATYYNWKSR YGGMEPSDIKKIKDLEDENRRLKQMFADLSLENRALKDVIEKKL" misc_feature complement(2907124..2907333) /locus_tag="STM2765" /note="Transposase; Region: HTH_Tnp_1; pfam01527" /db_xref="CDD:426308" regulatory complement(2907338..2907343) /regulatory_class="ribosome_binding_site" /locus_tag="STM2765" /note="putative RBS for STM2765; RegulonDB:STMS1H002840" gene complement(2907789..2908434) /locus_tag="STM2766" /db_xref="GeneID:1254289" CDS complement(2907789..2908427) /locus_tag="STM2766" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461693.1" /db_xref="GeneID:1254289" /translation="MSLYFFNNVPAEYLDKFCAVRDAFSNLENLLVTAEILNTCHESW NKETKDFDLLISTGTHKRILVKKTDGFFTMNLPFQVIEYESNICFNYDAYALPVNAEF ISRCRNVIATCGNGSFSYEAIAVELCDNFDRDIQQAINYCDAISSLLLVDHGYFRFDD DLKNARGKVHPRYHFDFFCNNSTNVKIGSNIRIGDTFFLDLFDVSKDRPYLT" gene complement(2908424..2910413) /locus_tag="STM2767" /db_xref="GeneID:1254290" CDS complement(2908424..2910406) /locus_tag="STM2767" /codon_start=1 /transl_table=11 /product="putative superfamily I DNA and RNA helicase" /protein_id="NP_461694.1" /db_xref="GeneID:1254290" /translation="MSNYCFYSQDALALAQSAGVDVIINSYAEQHKKQTYILCRPLSN EDVKYDYDRAIAVFSSGIKPFFIDFGDDDDLFEEYQEDFLEDVSYLAEKFKYRDKIGR KKSWQILFESLSRNDIDFKKLEVETKESRVIDLIISLIVGSINDTSRINLEANNLLDT IKSKIILFDTDQTKFVFQSGFGKKSVIQGLAGSGKTELLLHKLKEIYSKNPDSRIAFT CFNKILASTMRTRIPEFFDFMRVEKQIEWGTKLFCFNSWGLTKEPFSGMYRYICHYYE IPFGGFGNGDFDALCKKAIADINNSGRADKKALDYVFIDESQDFPQSFIDLCEMVTSK KLYVAGDVFQNIFMPISDNVNRADIVLKKCYRTDPKNLMFSHALGMGLYEEPVLRWLK EPEWDSCGYKYKKVGDRVHLSRDPLRRFEDIPKNHKSTAVHLLEGTDNGPDKIVDIII DIKERNPSLEQGDIAVIFLDAGGYIYEYIHSLKSKVKQQLGWDSNISHETKSKQDGKL FISNINNAKGLEFPFVICFAMKLVKRANFRNALYTMMARSFLESHLVLNNDNENPAIP TILEGLNFLNENNYMDVRLPSDEEIQSQKDFIVLDESVSISQMVKSYCADKKSTPRLI AKITDRVERIIAEDDDADGEYIKGLIEIEYERNKKL" misc_feature complement(2908688..2910040) /locus_tag="STM2767" /note="Superfamily I DNA and RNA helicases [Replication, recombination and repair]; Region: COG3972" /db_xref="CDD:443172" regulatory complement(2908429..2908434) /regulatory_class="ribosome_binding_site" /locus_tag="STM2766" /note="putative RBS for STM2766; RegulonDB:STMS1H002841" regulatory complement(2910408..2910413) /regulatory_class="ribosome_binding_site" /locus_tag="STM2767" /note="putative RBS for STM2767; RegulonDB:STMS1H002842" gene 2910673..2910984 /locus_tag="STM2768" /db_xref="GeneID:1254291" regulatory 2910673..2910678 /regulatory_class="ribosome_binding_site" /locus_tag="STM2768" /note="putative RBS for STM2768; RegulonDB:STMS1H002843" CDS 2910685..2910984 /locus_tag="STM2768" /note="similar to E. coli orf, hypothetical protein (AAC75149.1); Blastp hit to AAC75149.1 (102 aa), 85% identity in aa 4 - 102" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_461695.1" /db_xref="GeneID:1254291" /translation="MTKPALTTKKPRKQHTPEFRQEALKLAKRIGVAAAARELSLYKS QLHNWRSKQQNQLSSSEREQEMSAEIARLKRQLAERDEELAILQKAATYFAKRLK" misc_feature 2910709..2910966 /locus_tag="STM2768" /note="Transposase InsE and inactivated derivatives [Mobilome: prophages, transposons]; Region: InsE; COG2963" /db_xref="CDD:442203" gene 2910967..2911847 /locus_tag="STM2769" /db_xref="GeneID:1254292" regulatory 2910967..2910972 /regulatory_class="ribosome_binding_site" /locus_tag="STM2768" /note="putative RBS for STM2769; RegulonDB:STMS1H002844" CDS 2910981..2911847 /locus_tag="STM2769" /note="similar to E. coli IS3 putative transposase (AAC75150.1); Blastp hit to AAC75150.1 (288 aa), 84% identity in aa 1 - 288" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_461696.1" /db_xref="GeneID:1254292" /translation="MKYVFIEKHQAEFNIKAMCRVFQVARSGWYVWHQRRHQINRRQR FRLVCDNVVREAFSDAKQRYGAPRLTDELRAQGYQFNVKTVAASLRRQGLRAKASRRF RPVSYRKHGLPVSENLLKQDFYASGPNQKWVGDITYLRTGEGWLYLAVVIDLWPRSVI GWSMSSRMTAQLACNALQMALWQRKCPENVIVHTDRGGQYCSTDYQSLLKRHNLRGSM SARGCCYDNACAESFFHTLRVECIHGEDFVSREIMRTAVFNYSECDYNRWRRHSACGG LSPEQFENQNLA" misc_feature <2910981..2911829 /locus_tag="STM2769" /note="IS3 family transposase; Region: transpos_IS3; NF033516" /db_xref="CDD:468052" gene complement(2912627..2913166) /gene="fljA" /locus_tag="STM2770" /db_xref="GeneID:1254293" CDS complement(2912627..2913166) /gene="fljA" /locus_tag="STM2770" /note="flagellar synthesis; repressor of phase-1 flagellin gene. (SW:FLJA_SALTY)" /codon_start=1 /transl_table=11 /product="repressor of fliC" /protein_id="NP_461697.1" /db_xref="GeneID:1254293" /translation="MECMAVNDISYGREAEIWPRDYSMLARRVQFLRFNDIPVRLVSN NARIITGYIAKFNPKENLILASDKPKGNKRIEVKLESLAILEELSGNDAFNLSLVPAD GFNLQQYTPSRRDYFSICNKCYKQGVGIKIYMKYGQVLTGKTTGVNACQVGVRTSNGN HMQVMFDWVSRITSSDYAE" misc_feature complement(2912651..2913145) /gene="fljA" /locus_tag="STM2770" /note="Repressor of phase-1 flagellin; Region: Flag1_repress; pfam03614" /db_xref="CDD:281597" gene complement(2913234..2914761) /gene="fljB" /locus_tag="STM2771" /db_xref="GeneID:1254294" CDS complement(2913234..2914754) /gene="fljB" /locus_tag="STM2771" /note="phase 2 flagellin; flagellar synthesis; phase-2 flagellin. (SW:FLJB_SALTY)" /codon_start=1 /transl_table=11 /product="filament structural protein" /protein_id="NP_461698.1" /db_xref="GeneID:1254294" /translation="MAQVINTNSLSLLTQNNLNKSQSALGTAIERLSSGLRINSAKDD AAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRELAVQSANS TNSQSDLDSIQAEITQRLNEIDRVSGQTQFNGVKVLAQDNTLTIQVGANDGETIDIDL KQINSQTLGLDSLNVQKAYDVKDTAVTTKAYANNGTTLDVSGLDDAAIKAATGGTNGT ASVTGGAVKFDADNNKYFVTIGGFTGADAAKNGDYEVNVATDGTVTLAAGATKTTMPA GATTKTEVQELKDTPAVVSADAKNALIAGGVDATDANGAELVKMSYTDKNGKTIEGGY ALKAGDKYYAADYDEATGAIKAKTTSYTAADGTTKTAANQLGGVDGKTEVVTIDGKTY NASKAAGHDFKAQPELAEAAAKTTENPLQKIDAALAQVDALRSDLGAVQNRFNSAITN LGNTVNNLSEARSRIEDSDYATEVSNMSRAQILQQAGTSVLAQANQVPQNVLSLLR" misc_feature complement(2913237..2914754) /gene="fljB" /locus_tag="STM2771" /note="FliC/FljB family flagellin; Region: PRK08026" /db_xref="CDD:236140" regulatory complement(2914756..2914761) /regulatory_class="ribosome_binding_site" /gene="fljB" /locus_tag="STM2771" /note="putative RBS for fljB; RegulonDB:STMS1H002845" gene 2914839..2915418 /gene="hin" /locus_tag="STM2772" /db_xref="GeneID:1254295" regulatory 2914839..2914844 /regulatory_class="ribosome_binding_site" /gene="hin" /locus_tag="STM2772" /note="putative RBS for hin; RegulonDB:STMS1H002846" CDS 2914846..2915418 /gene="hin" /locus_tag="STM2772" /note="regulation of flagellar gene expression by site-specific inversion of DNA; DNA-invertase hin. (SW:HIN_SALTY)" /codon_start=1 /transl_table=11 /product="H inversion protein" /protein_id="NP_461699.1" /db_xref="GeneID:1254295" /translation="MATIGYIRVSTIDQNIDLQRNALTSANCDRIFEDRISGKIANRP GLKRALKYVNKGDTLVVWKLDRLGRSVKNLVALISELHERGAHFHSLTDSIDTSSAMG RFFFHVMSALAEMERELIVERTLAGLAAARAQGRLGGRPRAINKHEQEQISRLLEKGH PRQQLAIIFGIGVSTLYRYFPASRIKKRMN" misc_feature 2914852..2915226 /gene="hin" /locus_tag="STM2772" /note="Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; Region: SR_ResInv; cd03768" /db_xref="CDD:239737" misc_feature order(2914867..2914869,2914873..2914875,2915038..2915043, 2915050..2915052) /gene="hin" /locus_tag="STM2772" /note="catalytic residues [active]" /db_xref="CDD:239737" misc_feature 2914873..2914875 /gene="hin" /locus_tag="STM2772" /note="catalytic nucleophile [active]" /db_xref="CDD:239737" misc_feature order(2915035..2915037,2915167..2915172,2915176..2915181, 2915191..2915193) /gene="hin" /locus_tag="STM2772" /note="Presynaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature order(2915053..2915055,2915068..2915073,2915155..2915157, 2915164..2915169,2915176..2915181,2915188..2915190, 2915197..2915199) /gene="hin" /locus_tag="STM2772" /note="Synaptic Antiparallel dimer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature order(2915122..2915130,2915155..2915160,2915167..2915172, 2915179..2915181,2915191..2915193,2915200..2915202, 2915212..2915214) /gene="hin" /locus_tag="STM2772" /note="Synaptic Flat tetramer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature order(2915122..2915124,2915170..2915172,2915179..2915181, 2915191..2915193,2915200..2915202,2915212..2915214) /gene="hin" /locus_tag="STM2772" /note="Synaptic Site I dimer interface [polypeptide binding]; other site" /db_xref="CDD:239737" misc_feature order(2915194..2915196,2915212..2915217) /gene="hin" /locus_tag="STM2772" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:239737" misc_feature 2915260..2915394 /gene="hin" /locus_tag="STM2772" /note="Helix-turn-helix domain of resolvase; Region: HTH_7; pfam02796" /db_xref="CDD:397088" misc_feature order(2915263..2915271,2915365..2915370,2915374..2915382) /gene="hin" /locus_tag="STM2772" /note="DNA-binding interface [nucleotide binding]; DNA binding site" /db_xref="CDD:259851" gene 2916374..2917496 /gene="iroB" /locus_tag="STM2773" /db_xref="GeneID:1254296" regulatory 2916374..2916379 /regulatory_class="ribosome_binding_site" /gene="iroB" /locus_tag="STM2773" /note="putative RBS for iroB; RegulonDB:STMS1H002847" CDS 2916381..2917496 /gene="iroB" /locus_tag="STM2773" /note="related to UDP-glucuronosyltransferase" /codon_start=1 /transl_table=11 /product="putative glycosyl transferase" /protein_id="NP_461700.1" /db_xref="GeneID:1254296" /translation="MRILFVGPPLYGLLYPVLSLAQAFRVNGHEVLIASGGKFAQKAA EAGLVVFDAAPGFDSEAGYRRQEALRKENNIGTKMGNFSFFSEEMTDPLVAFAGQWRP DLIVYPPLGVVGPLIAAKYDIPVVMQTVGFGHTPWHIKGVTKSLSNAYRRHGVSAPPR DLAWIDVTPPSMSILQNDGEPVISMQYVPYNGGAVWEEWWERTPDRKRLLVSLGTVKP MVDGLDLISWVMDSAGEVDAEIILHLPANARSDLRSLPPNVRLVDWLPMGVFLNGADG FIHHGGAGNTLTALHAGIPQIVFGQGADRPVNARAVVERGCGIIPGKSGLTSSMINTF LGNRALREASQEVAAEMAAQPCPTEVAKKLIAMLQHG" misc_feature 2916384..2917436 /gene="iroB" /locus_tag="STM2773" /note="UDP:flavonoid glycosyltransferase YjiC, YdhE family [Carbohydrate transport and metabolism]; Region: YjiC; COG1819" /db_xref="CDD:441424" misc_feature 2916429..>2916836 /gene="iroB" /locus_tag="STM2773" /note="Glycosyltransferase Family 4; Region: Glyco_transf_4; pfam13439" /db_xref="CDD:463877" gene 2917570..2921230 /gene="iroC" /locus_tag="STM2774" /db_xref="GeneID:1254297" regulatory 2917570..2917575 /regulatory_class="ribosome_binding_site" /gene="iroC" /locus_tag="STM2774" /note="putative RBS for iroC; RegulonDB:STMS1H002848" CDS 2917577..2921230 /gene="iroC" /locus_tag="STM2774" /note="similar to E. coli ATP-binding transport protein; multicopy suppressor of htrB (AAC74000.1); Blastp hit to AAC74000.1 (582 aa), 26% identity in aa 14 - 582, 29% identity in aa 34 - 565" /codon_start=1 /transl_table=11 /product="putative ATP binding cassette (ABC) transporter" /protein_id="NP_461701.1" /db_xref="GeneID:1254297" /translation="MPATHSPMPARAWIVRLARVCWERKTLSIIVIVASVSTILLAAL TPLITRQAVNDAIAGDTTHLPLLACGLLLIALFDFIGNYVRRGYAGELSLWVQHTLRS RAFDSIQKLDGAGQDALRTGQVISRTNSDLQQVHTLLQMCPVPLAVLTYYVAGIAVML WMSPSMTLIVICVLAALAITALRARRRVFAQTGLASDRLAHMTEHMREVLEQISVVKS CVAELRETRWLDGQSRQMVRVRIGAAISQAMPGATMLALPVIGQIVLLCYGGWSVMNG RIDLGTFVAFASFLAMLTGPTRVLASFLVIAQRTQASVERVFALIDTRSRMEDGTESV EGQIIGLDVEKMSFHYDNGNRILNEISFSIHAGETVAVVGASGSGKSTLLMLLARFYD PTSGGVWLNTTAGQQNIRDLKLTALRRRVGVVFEDAFLFAGTVAENIAYGHPQATQDD IRRAADAAGASGFINALPQGFNTRLAERGSNLSGGQRQRIALARALITAPELLILDDT TSAVDAGTEAEINTALGRYADNEHMLLVIARRRSTLQLADRIVVLDKGRVVDIGTQAE LDARCPTFRSLMSGEGDFLALAPAEQRTLWPTTQAVKSDDAHERQTPAGKGFVDRMTR VPERAVQMALAGHGRQVSSLLTPVAWMFVIAALLIALDSAAGVGVLVLLQRGIDSGVA AGDMSTIGICALLALCLVAIGWCCYALQTIFAARAAESVQHTVRLRSFSHLLRLSLPW HEKHIDSRLTRMTVDVDSLARFLQNGLASAATSIVTMVAIAAAMFWLDPILALTALSA VPVVMLATWIYRRLSSPAYAQARLEIGKVNSTLQEKVSGMRVVQSHGQQQQEAARLRA LSDNFRATRVRAQKYLAVYFPFLTFCTEAAYAAVLLIGASRVAGGEMTPGILAAFFLL LGQFYGPVQQLSGIVDSWQQATASGKHINALLATEETENIEPSSITPGTGALRLEALT FLYPEKTQPVLDNLSLIIPPGTVVAVVGRSGAGKSTLIKLLAGLYSPGSGQIRVGERL IDAASLSDYRRQTGLVTQDVALFSGDIAENIRYPRPDSSDTEVESAARRAGLFETVQH LPLGFRTPVNNGGTDLSAGQRQLIALARAHLAQAHILLLDEATARIDRSAEERLMTSL TRVTHTEKRIALIVAHRLTTARRCDVIVVIDKGCIAEYGSHEQLIAAHGLYARLWRNS IGQTRDTQGEVIG" misc_feature 2917598..2919307 /gene="iroC" /locus_tag="STM2774" /note="ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; Region: MdlB; COG1132" /db_xref="CDD:440747" misc_feature 2919491..2921182 /gene="iroC" /locus_tag="STM2774" /note="ABC-type multidrug transport system, ATPase and permease component [Defense mechanisms]; Region: MdlB; COG1132" /db_xref="CDD:440747" gene 2921334..2922584 /gene="iroD" /locus_tag="STM2775" /db_xref="GeneID:1254298" regulatory 2921334..2921339 /regulatory_class="ribosome_binding_site" /gene="iroD" /locus_tag="STM2775" /note="putative RBS for iroD; RegulonDB:STMS1H002849" CDS 2921340..2922584 /gene="iroD" /locus_tag="STM2775" /note="similar to E. coli enterochelin esterase (AAC73686.1); Blastp hit to AAC73686.1 (374 aa), 31% identity in aa 3 - 362" /codon_start=1 /transl_table=11 /product="enterochelin esterase-like protein (Fes)" /protein_id="NP_461702.1" /db_xref="GeneID:1254298" /translation="MRLSPPVAPVAIQTATRLRRQLAAGSQVDASHFWREANSLALPL VTAINGADDEREVTFLWRAASPLRGVYVRLNRVTDKDNVAKGMMTQLPTTDIWHLTLR LPASYCGSYTMVEIPPETPGETVLQLGSRFASLVGKADPLNSAPGINVRGNAQESVLA LDHAPAQEEWSGCRAYAGQLFTSEHRLAGQRRRVRLYLPDVPVVQPLGLLVLTDGEIW FDHLGVSAAIDAAIRSGRIAPVAVLGIDNINARERVAILGGRRELVLDIAERLLPTLR AKYPERRWADRTQTVLAGQSLGGVTALMAARHAPESFGLVLSHSPSMWWTPDNRNRPN HFSAEERSWVSEHVLSAPSPAVRTHLCVGSLEGSTVPQVKQLHEKLRAAGVESHYSVY TGGHDYAWWRGALIDGLRLLPR" misc_feature 2921379..2922575 /gene="iroD" /locus_tag="STM2775" /note="enterobactin/ferric enterobactin esterase; Provisional; Region: PRK10439" /db_xref="CDD:236695" gene 2922609..2923551 /gene="iroE" /locus_tag="STM2776" /db_xref="GeneID:1254299" regulatory 2922609..2922614 /regulatory_class="ribosome_binding_site" /gene="iroE" /locus_tag="STM2776" /note="putative RBS for iroE; RegulonDB:STMS1H002850" CDS 2922616..2923551 /gene="iroE" /locus_tag="STM2776" /codon_start=1 /transl_table=11 /product="putative hydrolase of the alpha/beta superfamily" /protein_id="NP_461703.1" /db_xref="GeneID:1254299" /translation="MYGRQYHNKRYRMALFLVSFCFSALSYAQPDMQPLGPNIADKGS GYYHFRVNDFQSADGARHYRVWTAIPNKAAPPSGYPVLYMLDGNAVMDRLPETLLKQL ADHSPPVIVAIGYQTNLPFDLNGRAYDYTPAPGIDRDDSENNPRFHRKTGGGPAFRQL LERHIAPQVEQGITINSERRGVWGHSYGGLFVLDSWLSSSFFHIYYSASPSLSRDNFV LLNRLTTVKPSLFCHKKLIIMEGSASNGDSRQRQMAELLQKVQETVRTLENNGVNAAL QHYPGLGHGPMFNASFRSALLDISREPASQKPRCH" misc_feature 2922772..2923512 /gene="iroE" /locus_tag="STM2776" /note="Predicted hydrolase of the alpha/beta superfamily [General function prediction only]; Region: YbbA; COG2819" /db_xref="CDD:442067" gene complement(2923593..2925778) /gene="iroN" /locus_tag="STM2777" /db_xref="GeneID:1254300" CDS complement(2923593..2925773) /gene="iroN" /locus_tag="STM2777" /note="similar to E. coli outer membrane receptor for ferric enterobactin (enterochelin) and colicins B and D (AAC73685.1); Blastp hit to AAC73685.1 (746 aa), 52% identity in aa 3 - 728, 44% identity in aa 245 - 746" /codon_start=1 /transl_table=11 /product="TonB-dependent siderophore receptor protein" /protein_id="NP_461704.3" /db_xref="GeneID:1254300" /translation="MGMRVKKFIWLITVVSTGVNSPLSAAESTDDNGETMVVESTAEQ VLKQQPGVSIITRDDIQKNPPVNDLADIIRKMPGVNLTGNSASGTRGNNRQIDIRGMG PENTLVLIDGVPVTSRNSVRYSWRGERDTRGDTNWVPPEMVERIEVIRGPAVARYGSG AAGGVVNIITKRPTNDWHGSLSLYTNQPESSKEGDTRRGNFSLSGPLAGDTLTMRLYG NLNRTDADSWDINSSAGTKNAAGREGVTNKDINSVFSWKMTPQQILDFEAGYSRQGNI YAGDTQNSTSNAVTKSLAQSGRETNRLYRQNYGLTHNGIWDWGQSRLGFYYEKTDNTR MNEGLSGGGEGRITNDQTFTTNRLTSYRTSGEVNVPVIWLFEQTLTVGAEWNRDELND PSSTSLTVKDSNIAGIPGSAANRSSKNKSEISALYVEDNIEPMAGTNIIPGLRFDYLS ESGSNFSPSLNLSQELGEYVKVKAGIARAFKAPNLYQTSEGYLLYSKGNGCPKDITSG GCYLVGNKNLDPEISINKEIGLEFTVDDYHASVTYFRNDYQNKIVAGDQIIGRSASGA YVLQWQNGGKALIEGIEASMAVPLMPDRLNWNTNATYMIASEQKDTGNPLSIIPKYTV NTFLDWTITSALSANVNWTLYGKQKPRTHAESRSEETKGLSGKALGAYSLVGANVNYD INKNLRLNVGISNIFDKQIYRSAEGANTYNEPGRAYYAGVTASF" misc_feature complement(2923596..2925773) /gene="iroN" /locus_tag="STM2777" /note="outer membrane receptor FepA; Provisional; Region: PRK13528" /db_xref="CDD:237413" regulatory complement(2925773..2925778) /regulatory_class="ribosome_binding_site" /gene="iroN" /locus_tag="STM2777" /note="putative RBS for iroN; RegulonDB:STMS1H002851" gene 2926098..2926412 /locus_tag="STM2778" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1254301" gene complement(2926299..2926631) /locus_tag="STM2779" /db_xref="GeneID:1254302" CDS complement(2926299..2926631) /locus_tag="STM2779" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_449164.1" /db_xref="GeneID:1254302" /translation="MFEKENAMPGCISACSCVVSSTPPDPKAPPKPKWIELKGYCVTC TSQEDIRPPKEGEPKQKMTPRDLVLLRGLLKDLGVTQNPWQDPTVKPNNCGLPYFPVV PGERETDV" gene complement(2926806..2927863) /locus_tag="STM2780" /db_xref="GeneID:1254303" CDS complement(2926806..2927858) /locus_tag="STM2780" /note="putative pentapeptide repeats (8 copies); similar to E. coli orf, hypothetical protein (AAC77036.1); Blastp hit to AAC77036.1 (430 aa), 25% identity in aa 148 - 306, 26% identity in aa 145 - 259, 22% identity in aa 152 - 348, 23% identity in aa 238 - 412" /codon_start=1 /transl_table=11 /product="pipB-like protein" /protein_id="NP_461706.1" /db_xref="GeneID:1254303" /translation="MERSLDSLAGMAKSAFGAGTSAAMRQATSPKTILEYIINFFTCG GIRRRNETQYQELIETMAETLKSTMPDRGAPLPENIILDDMDGCRVEFNLPGENNEAG QVIVRVSKGDHSETREIPLASFEKICRALLFRCEFSLPQDSVILTAQGGMNLKGAVLT GANLTSENLCDADLSGANLEGAVLFMADCEGANFKGANLSGTSLGDSNFKNACLEDSI MCGATLDHANLTGANLQHASLLGCSMIECNCSGANMDHTNLSGATLIRADMSGATLQG ATIMAAIMEGAVLTRANLRKASFISTNLDGADLAEANLNNTCFKDCTLTDLRTEDATM STSTQTLFNEFYSENI" misc_feature complement(2926809..2927858) /locus_tag="STM2780" /note="type III secretion system effector PipB2; Region: PRK15196" /db_xref="CDD:185118" regulatory complement(2927858..2927863) /regulatory_class="ribosome_binding_site" /locus_tag="STM2780" /note="putative RBS for STM2780; RegulonDB:STMS1H002853" gene 2928377..2929306 /gene="virK" /locus_tag="STM2781" /db_xref="GeneID:1254304" CDS 2928377..2929306 /gene="virK" /locus_tag="STM2781" /note="similar to virK in Shigella; virulence gene; similar to E. coli putative enzyme (AAC73964.1); Blastp hit to AAC73964.1 (330 aa), 39% identity in aa 47 - 329" /codon_start=1 /transl_table=11 /product="virK-like protein" /protein_id="NP_461707.1" /db_xref="GeneID:1254304" /translation="MTMQQSDMERYNPLLMLKEVMAQTPYRHKRWGERKFRYKFLLRC LINPVTTIKYFNELCHLSQPRTLIIHRPLLPAKIQRPYLYTGLSIRCRAKAILEHYQF VQSFPESKIKKILLSEEQILLAHLEGKNGALVDIYCGPCGYDREGELTLTLCFNDTPL ARLSFSFIRHEGKQIALVAGLQGPSKHIGPQVIRNATKDCYGLFPKRMLYEAFATLMQ ACNVDEIYAVSENNHVYRQLRYLFQKKKTFVASYSEFWESLNGVKKGALYHLPSQVMR KAPESIPSKKRAEYRKRYHILDTIIQEVNSLSR" misc_feature 2928410..2929297 /gene="virK" /locus_tag="STM2781" /note="Outer membrane protein VirK/YbjX involved in antimicrobial peptide resistance, DUF535 family [Function unknown]; Region: VirK; COG2990" /db_xref="CDD:442229" gene 2929591..2930495 /gene="mig-14" /locus_tag="STM2782" /db_xref="GeneID:1254305" regulatory 2929591..2929596 /regulatory_class="ribosome_binding_site" /gene="mig-14" /locus_tag="STM2782" /note="putative RBS for mig-14; RegulonDB:STMS1H002854" CDS 2929599..2930495 /gene="mig-14" /locus_tag="STM2782" /codon_start=1 /transl_table=11 /product="putative transcription activator" /protein_id="NP_461708.1" /db_xref="GeneID:1254305" /translation="MKIQEVKRILTRWQPSSFSLYREVFTQYGGSINMHPDIVDYFMK RYNWHFKFFHYKEDDKIKGAYFICNDQNIGILTRRTFPLSSDEILIPMAPDLRCFLPD RTNRLSALHQPQIRNAIWKLARKKQNCLVKETFSSKFEKTRRNEYQRFLKKGGSVKSV ADCSSDELTHIFIELFRSRFGNTSSCYPADNLANFFSQLHHLLFGHILYIEGIPCAFD IVLKSESQMNIYFDVSNGAIKNECRPLSPGSILMWLNISRARHYCQERQKKLLFSIGI LKPEWEYKRMWSTPYFTGKSIC" misc_feature 2929599..2930492 /gene="mig-14" /locus_tag="STM2782" /note="antimicrobial resistance protein Mig-14; Provisional; Region: PRK15312" /db_xref="CDD:185212" gene complement(2931217..2932237) /gene="nxiA" /locus_tag="STM2783" /db_xref="GeneID:1254306" CDS complement(2931217..2932230) /gene="nxiA" /locus_tag="STM2783" /codon_start=1 /transl_table=11 /product="putative nickel transporter" /protein_id="NP_461709.1" /db_xref="GeneID:1254306" /translation="MNNHTKRRGIALTVFLVGVNILAWIWAFCVFHHHAVMLSAAILA YSFGLRHAVDADHIAAIDTVTRKLMQQGKTPLGVGAFFSLGHSTIVVLACLAIVVTSM AFRDRIDVLHQYGSLIGTAVSAFFLLAMALLNLFILFNVWRQFRSVTRGESVRAHDEA IPGGLMTRIFQRTFRLVTSSWHMYFVGFLFGLGFDTATEVGLLGISASAANQGLSLWS MMIFPVLFTAGMALVDSLDNFVMVGAYGWAFSHPLRKLYYNMTITAASVIVALAIGGL EALGLIDDALQLSGTFWQTVSTLNDHMGNVGFWVVGAFVLFWLLSVLNYRWRGYDKIT LNT" misc_feature complement(2931232..2932221) /gene="nxiA" /locus_tag="STM2783" /note="High-affinity nickel/cobalt permease [Inorganic ion transport and metabolism]; Region: HoxN; COG3376" /db_xref="CDD:442603" regulatory complement(2932232..2932237) /regulatory_class="ribosome_binding_site" /gene="nxiA" /locus_tag="STM2783" /note="putative RBS for nxiA; RegulonDB:STMS1H002855" gene complement(2932363..2933785) /gene="tctE" /locus_tag="STM2784" /db_xref="GeneID:1254307" CDS complement(2932363..2933778) /gene="tctE" /locus_tag="STM2784" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC76062.1); Blastp hit to AAC76062.1 (449 aa), 30% identity in aa 160 - 447, 29% identity in aa 1 - 56" /codon_start=1 /transl_table=11 /product="tricarboxylic transport regulatory protein" /protein_id="NP_461710.1" /db_xref="GeneID:1254307" /translation="MKWVKPQSLYLQLLLFLGLPLILLWGLSAFNSYVNALQAATQAY DRTLLSSARTVSERLVVRNNHLEVNVPWVVLDSFELNMNDRLYYKVVDPSGKVISGYD DLPVMPPATPRTRLYPALAWFYHTEYRGEAIRVARLLQPVNEGGIIGMAEIYVAETLQ SRRYLAGQLLFSSWISQGLLVLLTLVLVGWLLRRILRPMRQLSSLMVRREPGLLTPLP ELLPWSETRLLIVAFNRYIDRLRGILSRQERFSADASHQLKTPLAVLKTQAAVALASQ HPHHWYESLQAMSVTLDSTIQLTERLLQLSAVKHKEQGERRFSPVNLYDIVQSGCFTR LAQARSKHIDLGYEGEQEAMWIEGDEVLLSELCGNLLDNALKYTPEQGIVTARLERDG DAVTLVVEDSGPGIDDEHIHLALQPFHRLDNVGNVAGAGIGLALVNDIARLHRTHPHF SRSEALGGLYVRIRFLSLVPQ" misc_feature complement(2933272..2933706) /gene="tctE" /locus_tag="STM2784" /note="Two-component sensor kinase N-terminal; Region: 2CSK_N; pfam08521" /db_xref="CDD:430051" misc_feature complement(2932384..2933340) /gene="tctE" /locus_tag="STM2784" /note="Signal transduction histidine kinase [Signal transduction mechanisms]; Region: BaeS; COG0642" /db_xref="CDD:440407" gene complement(2933765..2934446) /gene="tctD" /locus_tag="STM2785" /db_xref="GeneID:1254308" CDS complement(2933765..2934439) /gene="tctD" /locus_tag="STM2785" /note="transcriptional regulatory protein TCTD. (SW:TCTD_SALTY)" /codon_start=1 /transl_table=11 /product="tricarboxylic transport regulatory protein" /protein_id="NP_461711.1" /db_xref="GeneID:1254308" /translation="MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLHSEM YALAVLDINMPGMDGLEVVQRLRKRGQTLPVLLLTARSAVADRVKGLNVGADDYLPKP FELEELDARLRALLRRSAGQVHEVQQLGELIFHDEGYFLLQGQPLALTPREQALLTVL MYRRTRPVSRQQLFEQVFSLNDEVSPESIELYIHRLRKKLQGSDVRITTLRGLGYVLE RGDEVG" misc_feature complement(2933777..2934439) /gene="tctD" /locus_tag="STM2785" /note="transcriptional regulator TctD; Region: PRK15479" /db_xref="CDD:185376" regulatory complement(2933780..2933785) /regulatory_class="ribosome_binding_site" /gene="tctD" /locus_tag="STM2785" /note="putative RBS for tctE; RegulonDB:STMS1H002856" regulatory complement(2934441..2934446) /regulatory_class="ribosome_binding_site" /gene="tctD" /locus_tag="STM2785" /note="putative RBS for tctD; RegulonDB:STMS1H002857" gene 2934587..2935571 /locus_tag="STM2786" /db_xref="GeneID:1254309" regulatory 2934587..2934592 /regulatory_class="ribosome_binding_site" /locus_tag="STM2786" /note="putative RBS for STM2786; RegulonDB:STMS1H002858" CDS 2934594..2935571 /locus_tag="STM2786" /codon_start=1 /transl_table=11 /product="tricarboxylic transport protein" /protein_id="NP_461712.1" /db_xref="GeneID:1254309" /translation="MKKQLLRTLTASILLMSTSVLAQEAPSRTECIAPAKPGGGFDLT CKLIQVSLLETGAIEKPMRVTYMPGGVGAVAYNAIVAQRPGEPGTVVAFSGGSLLNLS QGKFGRYGVDDVRWLASVGTDYGMIAVRADSPWKTLKDLMTAMEKDPNSVVIGAGASI GSQDWMKSALLAQKANVDPHKMRYVAFEGGGEPVTALMGNHVQVVSGDLSEMVPYLGG DKIRVLAVFSENRLPGQLANIPTAKEQGYDLVWPIIRGFYVGPKVSDADYQWWVDTFK KLQQTDEFKKQRDLRGLFEFDMTGQQLDDYVKKQVTDYREQAKAFGLAK" misc_feature 2934594..2935562 /locus_tag="STM2786" /note="Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC [Energy production and conversion]; Region: TctC; COG3181" /db_xref="CDD:442414" gene 2935577..2936017 /locus_tag="STM2787" /db_xref="GeneID:1254310" regulatory 2935577..2935582 /regulatory_class="ribosome_binding_site" /locus_tag="STM2787" /note="putative RBS for STM2787; RegulonDB:STMS1H002859" CDS 2935583..2936017 /locus_tag="STM2787" /codon_start=1 /transl_table=11 /product="tricarboxylic transport protein" /protein_id="NP_461713.3" /db_xref="GeneID:1254310" /translation="MMSDRIFAGIWLLLCIAGLFIAWQIQSEYSYEPVGPRPFPLGII GLMALCALALLLRHPDTVSWPRRHVLQKLITMIIILLMYAWGFEWLGFPIATALLTMV IGMLFGATIPAAGISGAVLGILLWYAFDRLLDVTLPLGAWLS" misc_feature 2935595..2935993 /locus_tag="STM2787" /note="Tripartite tricarboxylate transporter TctB family; Region: TctB; pfam07331" /db_xref="CDD:462147" gene 2936022..2937542 /locus_tag="STM2788" /db_xref="GeneID:1254311" regulatory 2936022..2936027 /regulatory_class="ribosome_binding_site" /locus_tag="STM2788" /note="putative RBS for STM2788; RegulonDB:STMS1H002860" CDS 2936028..2937542 /locus_tag="STM2788" /codon_start=1 /transl_table=11 /product="tricarboxylic transport protein" /protein_id="NP_461714.1" /db_xref="GeneID:1254311" /translation="MDTWIYLSQGFAVAMTPENLVIALIGCFVGTIVGLLPGLGPING VAILLPLAFALHLPAESALILLATVYIGCEYGGRISSILLNVPGDAAAIMTALDGYPM AQQGKGGVALSISAVSSFFGSLIAIGGIILFAPLLAQWSLAFGPAEYFALMVFAIACL GSMMAQNPLKSFLAALIGLGLATVGVDANTGVYRFTFDSVHLSDGVQFIVVVIGLFSV SEILLMLEHTSSGQTMVRKTGRMLFNLKEGAQCIGTTLRSSVIGFFVGVLPGAGATIA SAITYMTEKKLSGNSDSFGKGDIRGVAAPEAANNASACGSFIPMLTLGVPGSGTTAVM MGALTLYNITPGPAMFTEQPDIVWGLIAALLIANVMLLIMNIPLIGLFTRMLTIPLWF LVPAIAAVSAVGVYAVHSTTFDLVLMVALGVLGYILRKMHFPMSPLILGFVLGEMLEQ NLRRALSISNGNMAILWQSGVAKALLIMAIMVIVVPPVLRLLRKHSRKPQVDAG" misc_feature 2936028..2937509 /locus_tag="STM2788" /note="TctA family transporter [General function prediction only]; Region: COG3333" /db_xref="CDD:442562" gene 2937829..2938822 /locus_tag="STM2789" /db_xref="GeneID:1254312" regulatory 2937829..2937834 /regulatory_class="ribosome_binding_site" /locus_tag="STM2789" /note="putative RBS for STM2789; RegulonDB:STMS1H002861" CDS 2937836..2938822 /locus_tag="STM2789" /note="similar to E. coli orf, hypothetical protein (AAC75706.1); Blastp hit to AAC75706.1 (360 aa), 86% identity in aa 34 - 360" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461715.3" /db_xref="GeneID:1254312" /translation="MILMNALTAVKANTDDLAQRHTGFTLAPSAQSPRLLALTFTADT TKQFLHQVAQWPVQALEYKSFLRFKIGKILDDLCGNQLQPLLIKTLLNRAQGALLISA EGIDDVAQAEEMVKLATAVAHLIGRSNYDAMSGQYYARFVVKNVDNSDSYLRQPHRVM ELHNDGTYVEEVTDYVLMMKIDEQNMEGGNSLLLHLDDWEHLESFFTHPLARRVMRWA APPSKNVSHDVWHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDALETSQNIL SVPVPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYAASHYQTHQ" misc_feature 2937863..2938810 /locus_tag="STM2789" /note="carbon starvation induced protein CsiD; Region: PRK02963" /db_xref="CDD:235092" misc_feature order(2938232..2938234,2938331..2938333,2938337..2938339, 2938352..2938354,2938493..2938495,2938769..2938771, 2938775..2938777) /locus_tag="STM2789" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:238154" misc_feature order(2938322..2938324,2938328..2938330,2938406..2938408, 2938718..2938720,2938757..2938759) /locus_tag="STM2789" /note="active site" /db_xref="CDD:238154" misc_feature order(2938322..2938324,2938328..2938330,2938718..2938720) /locus_tag="STM2789" /note="iron coordination sites [ion binding]; other site" /db_xref="CDD:238154" gene 2938834..2940116 /gene="ygaF" /locus_tag="STM2790" /db_xref="GeneID:1254313" regulatory 2938834..2938839 /regulatory_class="ribosome_binding_site" /gene="ygaF" /locus_tag="STM2790" /note="putative RBS for ygaF; RegulonDB:STMS1H002862" CDS 2938848..2940116 /gene="ygaF" /locus_tag="STM2790" /note="similar to E. coli orf, hypothetical protein (AAC75707.1); Blastp hit to AAC75707.1 (444 aa), 88% identity in aa 23 - 444" /codon_start=1 /transl_table=11 /product="putative sarcosine oxidase-like protein" /protein_id="NP_461716.1" /db_xref="GeneID:1254313" /translation="MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTG HNSGVIHAGVYYTPGSLKAQFCLAGNQATKTFCDQNNIRYDTCGKMLVATSELEMARM RALWERTAANGLEREWLSAAELREREPNIIGLGGIFVPSSGIVSYRDVATAMANRFQA KGGEIIYHAEVSALTEHAAGVVIRTSQGREIETATLIGCAGLMADRLVKMLGVEPGFI ICPFRGEYFRLAPRHNRIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLALKR EGYRKRDVSFTDTLEIFRSAGIRRVLQNHLLSGLGEMKNSLCKSGYLRRVQKYCPSLT VNDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRSIHTCNAPSPAATSAIPIGAHIVSK VQALRASQSNPGRTLRAARSVDALHAAFTR" misc_feature 2938848..2940026 /gene="ygaF" /locus_tag="STM2790" /note="L-2-hydroxyglutarate oxidase; Region: PRK11728" /db_xref="CDD:183292" gene 2940126..2941586 /gene="gabD" /locus_tag="STM2791" /db_xref="GeneID:1254314" regulatory 2940126..2940131 /regulatory_class="ribosome_binding_site" /gene="gabD" /locus_tag="STM2791" /note="putative RBS for gabD; RegulonDB:STMS1H002863" CDS 2940138..2941586 /gene="gabD" /locus_tag="STM2791" /EC_number="1.2.1.16" /note="similar to E. coli succinate-semialdehyde dehydrogenase, NADP-dependent activity (AAC75708.1); Blastp hit to AAC75708.1 (482 aa), 90% identity in aa 1 - 482" /codon_start=1 /transl_table=11 /product="NADP-dependent succinate-semialdehyde dehydrogenase I" /protein_id="NP_461717.1" /db_xref="GeneID:1254314" /translation="MQLNDSTLFRQQAFIDGDWRDARGGDVIPVSNPANGKPLGNVPK MGAEETRDAINAANRALPAWRALTAKERANILRRWFNLMMEHQDDLARLMTLEQGKPL AEAKGEISYAASFIEWFAEEGKRIYGDTIPGHQADKRLLVIKQPIGVTAAITPWNFPS AMITRKAGPALAAGCTMVLKPASQTPFSALALAELAQRAGIPAGVFNVVTGSAGDIGG ELTSNPLVRKLSFTGSTEIGRQLMEQCAKDIKKVSLELGGNAPFIVFDDADLDKAVEG ALASKFRNAGQTCVCANRLYVQDGVYDRFAEKLNQAVNKLAVGDGLQADVAIGPLIDE KAVAKVQEHIADALEKGARVITGGEAHKLGGNFFQPTILADVPDNAKVAKEETFGPLA PLFRFSDEADVIRQANDTEFGLAAYFYARDLSRVFRVGEALEYGIVGINTGIISNEVA PFGGIKASGLGREGSKYGIEDYLEIKYMCIGL" misc_feature 2940138..2941583 /gene="gabD" /locus_tag="STM2791" /note="NADP-dependent succinate-semialdehyde dehydrogenase I; Region: gabD; PRK11241" /db_xref="CDD:183050" misc_feature order(2940339..2940341,2940366..2940368,2940489..2940491, 2940498..2940503,2940507..2940533,2940549..2940557, 2940570..2940572,2940816..2940818,2940852..2940854, 2940864..2940866,2940873..2940875,2941044..2941046, 2941056..2941058,2941194..2941196,2941398..2941400, 2941404..2941409,2941419..2941421,2941425..2941427, 2941434..2941436,2941440..2941460,2941476..2941478, 2941485..2941490,2941506..2941508,2941521..2941523, 2941557..2941577) /gene="gabD" /locus_tag="STM2791" /note="tetramerization interface [polypeptide binding]; other site" /db_xref="CDD:143421" misc_feature order(2940594..2940608,2940630..2940632,2940675..2940677, 2940681..2940686,2940828..2940839,2940846..2940848, 2940855..2940860,2940900..2940908,2941002..2941004, 2941293..2941295,2941299..2941301,2941377..2941379, 2941491..2941493) /gene="gabD" /locus_tag="STM2791" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143421" misc_feature order(2940606..2940608,2940900..2940902,2940993..2940995, 2941002..2941004) /gene="gabD" /locus_tag="STM2791" /note="catalytic residues [active]" /db_xref="CDD:143421" gene 2941587..2942884 /gene="gabT" /locus_tag="STM2792" /db_xref="GeneID:1254315" regulatory 2941587..2941592 /regulatory_class="ribosome_binding_site" /gene="gabT" /locus_tag="STM2792" /note="putative RBS for gabT; RegulonDB:STMS1H002864" CDS 2941601..2942884 /gene="gabT" /locus_tag="STM2792" /EC_number="2.6.1.19" /note="similar to E. coli 4-aminobutyrate aminotransferase activity (AAC75709.1); Blastp hit to AAC75709.1 (426 aa), 88% identity in aa 1 - 426" /codon_start=1 /transl_table=11 /product="4-aminobutyrate aminotransferase" /protein_id="NP_461718.1" /db_xref="GeneID:1254315" /translation="MNTNNALMQRRHNAVPRGVGQIHPIFAERAENCRVWDVEGREYL DFAGGIAVLNTGHLHPGIVSAVEAQLKKLSHTCFQVLAYEPYLALCERMNQKVPGDFA KKTLLVTTGSEAVENAVKIARAATKRSGAIAFSGAYHGRTHYTLSLTGKVHPYSAGMG LMPGHVYRALYPCPLHNISDDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAAS PAFMQRLRALCDQHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPL AGVTGRADVMDAIAPGGLGGTYAGNPIACAAALAVLDIFEQENLLQKANTLGKTLRDG LMEIAETHREIGDVRGLGAMIAIELFENGDPGKPNAALTADIVTRAREKGLILLSCGP YYNILRILVPLTIEASQIRQGLEIIAQCFDEAKQA" misc_feature 2941601..2942875 /gene="gabT" /locus_tag="STM2792" /note="4-aminobutyrate--2-oxoglutarate transaminase; Region: PRK08088" /db_xref="CDD:236149" misc_feature order(2941928..2941936,2942012..2942017,2942021..2942023, 2942216..2942218,2942315..2942317,2942321..2942326, 2942402..2942404) /gene="gabT" /locus_tag="STM2792" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99735" misc_feature order(2941931..2941936,2942012..2942017,2942216..2942218, 2942315..2942317,2942324..2942326,2942402..2942404) /gene="gabT" /locus_tag="STM2792" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature 2942402..2942404 /gene="gabT" /locus_tag="STM2792" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 2943003..2944414 /gene="gabP" /locus_tag="STM2793" /db_xref="GeneID:1254316" regulatory 2943003..2943008 /regulatory_class="ribosome_binding_site" /gene="gabP" /locus_tag="STM2793" /note="putative RBS for gabP; RegulonDB:STMS1H002865" CDS 2943014..2944414 /gene="gabP" /locus_tag="STM2793" /note="APC family; similar to E. coli transport permease protein of gamma-aminobutyrate (AAC75710.1); Blastp hit to AAC75710.1 (466 aa), 92% identity in aa 1 - 466" /codon_start=1 /transl_table=11 /product="RpoS dependent gamma-aminobutyrate transport protein" /protein_id="NP_461719.1" /db_xref="GeneID:1254316" /translation="MGQLSESHALGGGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAG PAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGPWAGYTIGWLYWWFW VLVIPLEANIAAIILNSWIPGIPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKV IAILAFIALGATAISGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAE IVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKSVGSYRSV LELLHIPHAKFIMDCVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGKTNRSKTP WVAVLLSTGAAFLTVIVNYYAPAKVFKFLIDSSGAIALLVYLVIAISQLRMRKILLAQ GGEIKLKMWLYPWLTWLVIGFICFVLVVMLFRPAQQLEVISTGLLGLGIIGTVPIMSR WKKLIRWQKAPLQNLR" misc_feature 2943074..2944411 /gene="gabP" /locus_tag="STM2793" /note="GABA permease; Region: PRK10197" /db_xref="CDD:182297" gene 2944444..2945133 /gene="ygaE" /locus_tag="STM2794" /db_xref="GeneID:1254317" regulatory 2944444..2944449 /regulatory_class="ribosome_binding_site" /gene="ygaE" /locus_tag="STM2794" /note="putative RBS for ygaE; RegulonDB:STMS1H002866" CDS 2944456..2945133 /gene="ygaE" /locus_tag="STM2794" /note="similar to E. coli putative transcriptional regulator (AAC75711.1); Blastp hit to AAC75711.1 (226 aa), 87% identity in aa 10 - 225" /codon_start=1 /transl_table=11 /product="putative GntR family transcriptional repressor" /protein_id="NP_461720.1" /db_xref="GeneID:1254317" /translation="MTALSQPTAIDGYRWLKNDIIRGTYQPDEKLRMSLLTARYALGV GPLREALSQLVAERLVTVVNQKGYRVASMSEAELLDIFDARANMEAMLVRLAIERGDD AWEAEILARAHMLSKLEASDASEHMLDEWDQRHQAFHSAIVAGCGSHYLLQMRERLFD LAARYRFIWLRETVLSVEMLEDKHIQHHTLTEAILAREAARASELMRQHLLTPIPIIR QAMAGKM" misc_feature 2944456..2945127 /gene="ygaE" /locus_tag="STM2794" /note="DNA-binding transcriptional regulator CsiR; Provisional; Region: PRK11534" /db_xref="CDD:183181" gene complement(2945155..2945613) /gene="ygaU" /locus_tag="STM2795" /db_xref="GeneID:1254318" CDS complement(2945155..2945604) /gene="ygaU" /locus_tag="STM2795" /note="similar to E. coli orf, hypothetical protein (AAC75712.1); Blastp hit to AAC75712.1 (149 aa), 93% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="putative LysM domain protein" /protein_id="NP_461721.1" /db_xref="GeneID:1254318" /translation="MGLFNFVKDAGEKLWDAVTANHDKDDQAKKVQEHLNKTGIPDAD KVNVQIADGKATVTGDGLSQEAKEKILVAVGNIAGISSVDDQVKTTTPAAESQFYTVK SGDTLSAISKQVYGNANLYNKIFEANKPMLKSPEKIYPGQVLRIPEE" misc_feature complement(2945161..2945604) /gene="ygaU" /locus_tag="STM2795" /note="LysM domain/BON superfamily protein; Provisional; Region: PRK11198" /db_xref="CDD:236880" regulatory complement(2945608..2945613) /regulatory_class="ribosome_binding_site" /gene="ygaU" /locus_tag="STM2795" /note="putative RBS for ygaU; RegulonDB:STMS1H002867" gene complement(2945704..2945873) /gene="yqaE" /locus_tag="STM2796" /db_xref="GeneID:1254319" CDS complement(2945704..2945862) /gene="yqaE" /locus_tag="STM2796" /note="similar to E. coli orf, hypothetical protein (AAC75713.1); Blastp hit to AAC75713.1 (52 aa), 94% identity in aa 1 - 51" /codon_start=1 /transl_table=11 /product="putative YqaE family transport protein" /protein_id="NP_461722.1" /db_xref="GeneID:1254319" /translation="MGFWRIVFTIILPPLGVLLGKGFGWAFILNILLTLLGYIPGLIH AFWVQMRH" misc_feature complement(2945707..2945862) /gene="yqaE" /locus_tag="STM2796" /note="Membrane potential modulator PMP3/YqaE, plasma membrane proteolipid 3 (PMP3)/Esi3/RCI2/UPF0057 family [Energy production and conversion]; Region: YqaE; COG0401" /db_xref="CDD:440170" regulatory complement(2945868..2945873) /regulatory_class="ribosome_binding_site" /gene="yqaE" /locus_tag="STM2796" /note="putative RBS for yqaE; RegulonDB:STMS1H002868" gene 2946045..2946344 /locus_tag="STM2797" /db_xref="GeneID:1254320" CDS 2946045..2946344 /locus_tag="STM2797" /note="similar to E. coli orf, hypothetical protein (AAC75714.1); Blastp hit to AAC75714.1 (99 aa), 89% identity in aa 1 - 99" /codon_start=1 /transl_table=11 /product="putative arsR family regulatory protein" /protein_id="NP_461723.1" /db_xref="GeneID:1254320" /translation="MTELEQLQASAEQAAALLKAMSHPKRLLILCMLCGSPKTSAGEL ARITGLSPSATSQHLARMREEGLIDSQRDAQRIHYFIKNEAVNTIIATLKNLYCP" misc_feature 2946075..2946335 /locus_tag="STM2797" /note="DNA-binding transcriptional regulator, ArsR family [Transcription]; Region: ArsR; COG0640" /db_xref="CDD:440405" gene 2946343..2946881 /gene="ygaP" /locus_tag="STM2798" /db_xref="GeneID:1254321" regulatory 2946343..2946348 /regulatory_class="ribosome_binding_site" /gene="ygaP" /locus_tag="STM2798" /note="putative RBS for ygaP; RegulonDB:STMS1H002869" CDS 2946354..2946881 /gene="ygaP" /locus_tag="STM2798" /note="similar to E. coli orf, hypothetical protein (AAC75715.1); Blastp hit to AAC75715.1 (174 aa), 75% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="putative rhodanese-related sulfurtransferase" /protein_id="NP_461724.1" /db_xref="GeneID:1254321" /translation="MSIGIVSPREAQALIAQGAKLIDVRDADEYLREHIPHAQLAPLS RLEQGDLPANLRAEQIIFHCQSGKRTSSNAAKLQAIAAPAQVSLLEGGIDGWKAAGLP VTEDKSQPLPLMRQVQIAAGGLALLGVIMGYTVHGGFFLISGFVGAGLMLAGMTGFCG MARLLEKMPWNTRTH" misc_feature 2946369..2946662 /gene="ygaP" /locus_tag="STM2798" /note="Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins...; Region: RHOD; cl00125" /db_xref="CDD:444705" misc_feature 2946543..2946545 /gene="ygaP" /locus_tag="STM2798" /note="active site residue [active]" /db_xref="CDD:238089" misc_feature 2946696..2946848 /gene="ygaP" /locus_tag="STM2798" /note="Protein of unknown function (DUF2892); Region: DUF2892; pfam11127" /db_xref="CDD:463227" gene complement(2947229..2947770) /gene="stpA" /locus_tag="STM2799" /db_xref="GeneID:1254322" CDS complement(2947229..2947630) /gene="stpA" /locus_tag="STM2799" /note="DNA-binding protein STPA. (SW:STPA_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding protein with chaperone activity" /protein_id="NP_461725.1" /db_xref="GeneID:1254322" /translation="MNLMLQNLNNIRTLRAMAREFSIDVLEEMLEKFRVVTKERREEE ELQQRQLAEKQEKINAFLELMKADGINPEELFAMDSAMPRSAKKRQPRPAKYRFTDFN GEEKTWTGQGRTPKPIAQALAAGKSLDDFLI" misc_feature complement(2947232..2947630) /gene="stpA" /locus_tag="STM2799" /note="DNA-binding protein StpA; Region: PRK10328" /db_xref="CDD:182380" regulatory complement(2947640..2947645) /regulatory_class="ribosome_binding_site" /gene="stpA" /locus_tag="STM2799" /note="putative RBS for stpA; RegulonDB:STMS1H002870" protein_bind complement(2947742..2947756) /gene="stpA" /locus_tag="STM2799" /note="putative binding site for Lrp, RegulonDB: STMS1H000256" /bound_moiety="Lrp" regulatory complement(2947743..2947751) /regulatory_class="minus_10_signal" /gene="stpA" /locus_tag="STM2799" /note="putative -10_signal for stpA; RegulonDB:STMLTH004560" regulatory complement(2947762..2947770) /regulatory_class="minus_35_signal" /gene="stpA" /locus_tag="STM2799" /note="putative -35_signal for stpA; RegulonDB:STMLTH004560" gene 2948316..2948778 /locus_tag="STM2800" /db_xref="GeneID:1254323" regulatory 2948316..2948321 /regulatory_class="ribosome_binding_site" /locus_tag="STM2800" /note="putative RBS for STM2800; RegulonDB:STMS1H002871" CDS 2948329..2948778 /locus_tag="STM2800" /note="similar to E. coli orf, hypothetical protein (AAC75717.1); Blastp hit to AAC75717.1 (149 aa), 87% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461726.1" /db_xref="GeneID:1254323" /translation="MFSPQSRLRHAVADTFAMVVYCSVVNMLIEIFLSGMSFEQSLSS RLVAIPVNILIAWPYGVYRDLIMRVARKASPAGWAKNLADVLAYVTFQSPVYIIILLT VGAGWHQIVAAVSSNIVVSMLMGAVYGYFLDYCRRLFKVSSYHQAKA" misc_feature 2948335..2948751 /locus_tag="STM2800" /note="L-alanine exporter; Region: AlaE; pfam06610" /db_xref="CDD:399538" gene complement(2948813..2949174) /gene="ygaC" /locus_tag="STM2801" /db_xref="GeneID:1254324" CDS complement(2948813..2949163) /gene="ygaC" /locus_tag="STM2801" /note="similar to E. coli orf, hypothetical protein (AAC75718.1); Blastp hit to AAC75718.1 (114 aa), 88% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461727.1" /db_xref="GeneID:1254324" /translation="MYLRPDEVARVLEKAGFTVDVVTNKTYGYRRGENYVYVNREARM GRTALIIHPRLKDRSSSLADPASDIKTCDHYQNFPLYLGGETHEHYGIPHGFSSRIAL ERYLNGLFGDEKTD" misc_feature complement(2948831..2949163) /gene="ygaC" /locus_tag="STM2801" /note="hypothetical protein; Provisional; Region: PRK10556" /db_xref="CDD:182545" regulatory complement(2949169..2949174) /regulatory_class="ribosome_binding_site" /gene="ygaC" /locus_tag="STM2801" /note="putative RBS for ygaC; RegulonDB:STMS1H002872" gene 2949313..2949651 /gene="ygaM" /locus_tag="STM2802" /db_xref="GeneID:1254325" CDS 2949313..2949651 /gene="ygaM" /locus_tag="STM2802" /note="similar to E. coli orf, hypothetical protein (AAC75719.1); Blastp hit to AAC75719.1 (113 aa), 86% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461728.1" /db_xref="GeneID:1254325" /translation="MEDHMLNKPNRNDVDDGVQDIQNDVNRLADSLEDVLKSWGSDAK DEAEAARRKAQALLKETRARMQGRTRVKQAACDAMGCADTFVREKPWCSVGTAAAVGI FIGALLSLRR" misc_feature 2949325..2949648 /gene="ygaM" /locus_tag="STM2802" /note="hypothetical protein; Provisional; Region: PRK10132" /db_xref="CDD:182259" gene complement(2949735..2951074) /locus_tag="STM2803" /db_xref="GeneID:1254326" CDS complement(2949735..2951069) /locus_tag="STM2803" /note="similar to E. coli putative regulator (AAC77296.1); Blastp hit to AAC77296.1 (470 aa), 31% identity in aa 119 - 437, 27% identity in aa 1 - 224" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_461729.1" /db_xref="GeneID:1254326" /translation="MPRYQHIARQLKTAIEQGELAPGTRLPSSRTWAQELGVSRATVE NAYGELVAQGWLERRGQAGTFVSNALRFETAPPIPAVFAGESPEPKPFQMGLPALDLF PREKWARVMGRRLRTQTCFDLALGDVCGEAILRQAIVDYLRVSRSIECLPEQVFITSG YADSMRLILRTLSVPGDSMWVEDPGFPLIRPVITQEGITLAPIPVDADGLNVAAGMRD CPQGRFALVTPAHQSPLGVALSLTRRRQLLAWAANVQAWIIEDDYDSEFRYHGKPLPP LKSLDAPQRVIYAGTFSKSLFPALRTAWLVVPIKQIEHFRQQASLMPCSVPLLWQHTL ADFIRDGHFWRHLKKMRQHYAQRRLWIEEALAEQGFVVTLQKGGIQLVIEVEGDDKAQ VAKANQAGLAVQALSRWRVVSSGKGGILLSFTNITSAGMAKQVACQLRQAIQ" misc_feature complement(2949738..2951069) /locus_tag="STM2803" /note="DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain [Transcription, Amino acid transport and metabolism]; Region: ARO8; COG1167" /db_xref="CDD:440781" regulatory complement(2951069..2951074) /regulatory_class="ribosome_binding_site" /locus_tag="STM2803" /note="putative RBS for STM2803; RegulonDB:STMS1H002873" gene 2951145..2951589 /locus_tag="STM2804" /db_xref="GeneID:1254327" regulatory 2951145..2951150 /regulatory_class="ribosome_binding_site" /locus_tag="STM2804" /note="putative RBS for STM2804; RegulonDB:STMS1H002874" CDS 2951158..2951589 /locus_tag="STM2804" /note="similar to E. coli orf, hypothetical protein (AAC74823.1); Blastp hit to AAC74823.1 (182 aa), 35% identity in aa 54 - 167" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461730.1" /db_xref="GeneID:1254327" /translation="MTTLRQPYYELSPEVYSALVQAKNALEKSTLDPTLMELIYLRVS QINGCAFCLEMHSKALRKAGVNQAKLDALAGWRVSHHFSEQECAALAWAESVTHIAET HAEDNIYLPLLDHFSAREISDLTFAIGLMNCFNRLAIGMRM" misc_feature 2951191..2951586 /locus_tag="STM2804" /note="Alkylhydroperoxidase family enzyme, contains CxxC motif [Inorganic ion transport and metabolism]; Region: YciW; COG2128" /db_xref="CDD:441731" gene 2951846..2952106 /gene="nrdH" /locus_tag="STM2805" /db_xref="GeneID:1254328" regulatory 2951846..2951851 /regulatory_class="ribosome_binding_site" /gene="nrdH" /locus_tag="STM2805" /note="putative RBS for nrdH; RegulonDB:STMS1H002875" CDS 2951861..2952106 /gene="nrdH" /locus_tag="STM2805" /note="hydrogen donor; glutaredoxin-like protein NRDH. (SW:NRDH_SALTY)" /codon_start=1 /transl_table=11 /product="glutaredoxin-like protein" /protein_id="NP_461731.1" /db_xref="GeneID:1254328" /translation="MSITIYTRNNCVQCHATKRAMESRGFEFEMVNVDLVPDAADTLR AQGFRQLPVVMAGDLSWSGFRPDMINRLHPTPHAANA" misc_feature 2951861..2952103 /gene="nrdH" /locus_tag="STM2805" /note="glutaredoxin-like protein NrdH; Region: PRK10329" /db_xref="CDD:182381" misc_feature order(2951891..2951893,2951900..2951902) /gene="nrdH" /locus_tag="STM2805" /note="catalytic residues [active]" /db_xref="CDD:239274" gene 2952092..2952513 /gene="nrdI" /locus_tag="STM2806" /db_xref="GeneID:1254329" regulatory 2952092..2952097 /regulatory_class="ribosome_binding_site" /gene="nrdH" /locus_tag="STM2805" /note="putative RBS for nrdI; RegulonDB:STMS1H002876" CDS 2952103..2952513 /gene="nrdI" /locus_tag="STM2806" /note="NRDI protein. (SW:NRDI_SALTY)" /codon_start=1 /transl_table=11 /product="stimulates ribonucleotide reduction" /protein_id="NP_461732.1" /db_xref="GeneID:1254329" /translation="MSALVYFSSSSENTHRFMQRLGLPATRIPLNERERIQVDEPYIL VVPSYGGGGMAGAVPRQVIRFLNDEHNRARIRGVIASGNRNFGDAWGCAGDVIAQKCG VPWLYRFELMGTQRDIDNVRKGVNEFWQQLPRSA" misc_feature 2952112..2952507 /gene="nrdI" /locus_tag="STM2806" /note="Flavodoxin NrdI, NrdF-interacting activator of class Ib ribonucleotide reductase [Nucleotide transport and metabolism]; Region: NrdI; COG1780" /db_xref="CDD:441386" gene 2952470..2954630 /gene="nrdE" /locus_tag="STM2807" /db_xref="GeneID:1254330" regulatory 2952470..2952475 /regulatory_class="ribosome_binding_site" /gene="nrdI" /locus_tag="STM2806" /note="putative RBS for nrdE; RegulonDB:STMS1H002877" CDS 2952486..2954630 /gene="nrdE" /locus_tag="STM2807" /EC_number="1.17.4.1" /note="ribonucleoside-diphosphate reductase 2 alpha chain. (SW:RIR3_SALTY)" /codon_start=1 /transl_table=11 /product="ribonucleoside diphosphate reductase 2, alpha subunit" /protein_id="NP_461733.1" /db_xref="GeneID:1254330" /translation="MATTTPERVMQETMDYHALNAMLNLYDKAGHIQFDKDQQAIDAF FATHVRPHSVTFASQHERLGTLVREGYYDDAVLARYDRAFVLRLFEHAHASGFRFQTF LGAWKFYTSYTLKTFDGKRYLEHFEDRVTMVALTLAQGDETLATQLTDEMLSGRFQPA TPTFLNCGKQQRGELVSCFLLRIEDNMESIGRAVNSALQLSKRGGGVAFLLSNLREAG APIKRIENQSSGVIPVMKMLEDAFSYANQLGARQGAGAVYLHAHHPDILRFLDTKREN ADEKIRIKTLSLGVVIPDITFRLAKENAQMALFSPYDIQRRYGKPFGDIAISERYDEL IADPHVRKTYINARDFFQTLAEIQFESGYPYIMFEDTVNRANPIAGRINMSNLCSEIL QVNSASRYDDNLDYTHIGHDISCNLGSLNIAHVMDSPDIGRTVETAIRGLTAVSDMSH IRSVPSIAAGNAASHAIGLGQMNLHGYLAREGIAYGSPEALDFTNLYFYTITWHAVHT SMRLARERGKTFAGFAQSRYASGDYFTQYLQDDWQPKTAKVRALFARSGITLPTREMW LKLRDDVMRYGIYNQNLQAVPPTGSISYINHATSSIHPIVAKIEIRKEGKTGRVYYPA PFMTNENLDMYQDAYDIGPEKIIDTYAEATRHVDQGLSLTLFFPDTATTRDINKAQIY AWRKGIKSLYYIRLRQLALEGTEIEGCVSCAL" misc_feature 2952528..2954627 /gene="nrdE" /locus_tag="STM2807" /note="ribonucleoside-diphosphate reductase, class 1b, alpha subunit; Region: RNR_1b_NrdE; TIGR04170" /db_xref="CDD:211905" gene 2954629..2955600 /gene="nrdF" /locus_tag="STM2808" /db_xref="GeneID:1254331" regulatory 2954629..2954634 /regulatory_class="ribosome_binding_site" /gene="nrdF" /locus_tag="STM2808" /note="putative RBS for nrdF; RegulonDB:STMS1H002878" CDS 2954641..2955600 /gene="nrdF" /locus_tag="STM2808" /EC_number="1.17.4.1" /note="ribonucleoside-diphosphate reductase 2 beta chain. (SW:RIR4_SALTY)" /codon_start=1 /transl_table=11 /product="ribonucleoside-diphosphate reductase 2, beta subunit" /protein_id="NP_461734.1" /db_xref="GeneID:1254331" /translation="MKLSRISAINWNKIQDDKDLEVWNRLTSNFWLPEKVPLSNDIPA WQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHA RSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESF LFYSGFWLPMYFSSRGKLTNTADLIRLIIRDEAVHGYYIGYKYQIALQKLSAIEREEL KLFALDLLMELYDNEIRYTEALYAETGWVNDVKAFLCYNANKALMNLGYEALFPPEMA DVNPAILAALSPNADENHDFFSGSGSSYVMGKTVETEDEDWNF" misc_feature 2954656..2955597 /gene="nrdF" /locus_tag="STM2808" /note="ribonucleoside-diphosphate reductase, class 1b, beta subunit; Region: RNR_1b_NrdF; TIGR04171" /db_xref="CDD:275027" misc_feature order(2954665..2954667,2954698..2954700,2954719..2954721, 2954914..2954919,2954926..2954928,2954935..2954940, 2954947..2954949,2954956..2954958,2955004..2955009, 2955016..2955018) /gene="nrdF" /locus_tag="STM2808" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153108" misc_feature order(2954731..2954733,2954839..2954841,2954932..2954934, 2954941..2954943,2954953..2954955,2955208..2955213, 2955223..2955225) /gene="nrdF" /locus_tag="STM2808" /note="putative radical transfer pathway [active]" /db_xref="CDD:153108" misc_feature order(2954839..2954841,2954932..2954934,2954941..2954943, 2955112..2955114,2955214..2955216,2955223..2955225) /gene="nrdF" /locus_tag="STM2808" /note="diiron center [ion binding]; other site" /db_xref="CDD:153108" misc_feature 2954953..2954955 /gene="nrdF" /locus_tag="STM2808" /note="tyrosyl radical; other site" /db_xref="CDD:153108" gene 2955884..2957157 /gene="proV" /locus_tag="STM2809" /db_xref="GeneID:1254332" regulatory 2955884..2955892 /regulatory_class="minus_35_signal" /gene="proV" /locus_tag="STM2809" /note="putative -35_signal for proV; RegulonDB:STMLTH004561" regulatory 2955911..2955919 /regulatory_class="minus_10_signal" /gene="proV" /locus_tag="STM2809" /note="putative -10_signal for proV; RegulonDB:STMLTH004561" regulatory 2955937..2955942 /regulatory_class="ribosome_binding_site" /gene="proV" /locus_tag="STM2809" /note="putative RBS for proV; RegulonDB:STMS1H002879" CDS 2955955..2957157 /gene="proV" /locus_tag="STM2809" /note="ABC superfamily (atp_bind); glycine betaine/l-proline transport ATP-binding protein PROV. (SW:PROV_SALTY)" /codon_start=1 /transl_table=11 /product="glycine/betaine/proline transport protein" /protein_id="NP_461735.1" /db_xref="GeneID:1254332" /translation="MAIKLEVKNLYKIFGEHPQRAFKYIEKGLSKEQILEKTGLSLGV KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELRE VRRKKIAMVFQSFALMPHMTVLDNTAFGMELAGIAAQERREKALDALRQVGLENYAHA YPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI VFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFRGVDISQVFSA KDIARRSPVGLIRKTPGFGPRSALKLLQDEDREYGYVIERGNKFVGVVSIDSLKAALS QAQGIEAALIDDPLVVDAQTPLSELLSHVGQAPCAVPVVDEEHQYVGIISKRMLLQAL DREGGNNG" misc_feature 2955955..2957154 /gene="proV" /locus_tag="STM2809" /note="proline/glycine betaine ABC transporter ATP-binding protein ProV; Region: PRK10070" /db_xref="CDD:182221" gene 2957137..2958214 /gene="proW" /locus_tag="STM2810" /db_xref="GeneID:1254333" regulatory 2957137..2957142 /regulatory_class="ribosome_binding_site" /gene="proW" /locus_tag="STM2810" /note="putative RBS for proW; RegulonDB:STMS1H002880" CDS 2957150..2958214 /gene="proW" /locus_tag="STM2810" /note="ABC superfamily (membrane); glycine betaine/L-proline transport system permease protein PROW. (SW:PROW_SALTY)" /codon_start=1 /transl_table=11 /product="glycine/betaine/proline transport protein" /protein_id="NP_461736.1" /db_xref="GeneID:1254333" /translation="MADQTNPWDTAQVADTTTQTADAWGTPAGVATDGGSTDWLNSAP APAPEHFSLLDPFHKTLIPLDSWVTEGIDWVVTHFRPLFQGIRVPVDYILNGFQQLLL GMPAPVAIILFALIAWQVSGVGMGIATLISLIAIGAIGAWSQAMITLALVLTALLFCV VIGLPMGIWLARSPRAAKIVRPLLDAMQTTPAFVYLVPIVMLFGIGNVPGVVVTIIFA LPPIVRLTILGINQVPADLIEASRSFGASPRQMLFKVQLPLAMPTIMAGVNQTLMLAL SMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGVGIVILAIILDRLTQAVGRDSRSR GNRRWYTTGPVGLITRPFVK" misc_feature 2957150..2958211 /gene="proW" /locus_tag="STM2810" /note="proline/glycine betaine ABC transporter permease ProW; Region: PRK10952" /db_xref="CDD:236805" misc_feature order(2957630..2957635,2957642..2957647,2957660..2957662, 2957687..2957698,2957702..2957731,2957738..2957743, 2957747..2957749,2957795..2957800,2957804..2957806, 2957810..2957812,2957819..2957824,2957828..2957830, 2957840..2957845,2957852..2957854,2957903..2957905, 2957945..2957950,2957957..2957959,2957978..2957989, 2957996..2958001,2958038..2958043,2958071..2958076, 2958083..2958088,2958092..2958097,2958104..2958109) /gene="proW" /locus_tag="STM2810" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature order(2957705..2957749,2957978..2957995) /gene="proW" /locus_tag="STM2810" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature order(2957747..2957749,2957780..2957782,2957996..2957998, 2958032..2958034,2958041..2958043,2958071..2958073) /gene="proW" /locus_tag="STM2810" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature order(2957855..2957893,2957909..2957914,2957924..2957926) /gene="proW" /locus_tag="STM2810" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" gene 2958273..2959279 /gene="proX" /locus_tag="STM2811" /db_xref="GeneID:1254334" regulatory 2958273..2958278 /regulatory_class="ribosome_binding_site" /gene="proX" /locus_tag="STM2811" /note="putative RBS for proX; RegulonDB:STMS1H002881" CDS 2958284..2959279 /gene="proX" /locus_tag="STM2811" /note="ABC superfamily (bind_prot), ; similar to E. coli high-affinity transport system for glycine betaine and proline (AAC75726.1); Blastp hit to AAC75726.1 (330 aa), 83% identity in aa 1 - 330" /codon_start=1 /transl_table=11 /product="glycine/betaine/proline transport protein" /protein_id="NP_461737.1" /db_xref="GeneID:1254334" /translation="MRHTVIFASAFATLVTASAFAADLPGKGITVQPIQSTISEETFQ TLLVSRALEKLGYTVNKPSEVDYNVGYTSIASGDATFTAVNWQPLHDDMYAAAGGDNK FYREGVFVSGAAQGYLIDKKTAEQYNITNIAQLKDPKIAKIFDTNGDGKADMMGCSPG WGCEAVINHQNKAFDLQKTVEVSHGNYAAMMADTITRFKEGKPVLYYTWTPYWVSDVM KPGKDVVWLQVPFSSLPGEQKNIDTKLPNGANYGFPVNTMHIVANKAWAEKNPAAAKL FAIMKLPLADINAQNAMMHAGKSSEADVQGHVDGWINAHQQQFDGWVKEALAAQK" misc_feature 2958284..2959276 /gene="proX" /locus_tag="STM2811" /note="proline/glycine betaine ABC transporter substrate-binding protein ProX; Region: proX; PRK11119" /db_xref="CDD:236852" misc_feature order(2958395..2958397,2958401..2958403,2958539..2958541, 2958626..2958628,2958752..2958754,2958764..2958769, 2958908..2958910) /gene="proX" /locus_tag="STM2811" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:270356" gene 2959431..2960628 /locus_tag="STM2812" /db_xref="GeneID:1254335" regulatory 2959431..2959436 /regulatory_class="ribosome_binding_site" /locus_tag="STM2812" /note="putative RBS for STM2812; RegulonDB:STMS1H002882" CDS 2959444..2960628 /locus_tag="STM2812" /note="similar to E. coli putative transport protein (AAC75728.1); Blastp hit to AAC75728.1 (305 aa), 92% identity in aa 1 - 305" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461738.1" /db_xref="GeneID:1254335" /translation="MTKPTHELSPALIVLMSVATGLAVASNYYAQPLLDTIAHHFSLS ASSAGFIVTAAQLGYAAGLLFLVPLGDMFERRTLIVSMTLLAAGGMLITASSQSLSMM ILGTALTGLFSVVAQILVPLAATLATPATRGKVVGTIMSGLLLGILLARTVAGLLANL GGWRTVFWVASALMALMAVALWRGLPKLKSDTHLNYPQLLGSVFSLFIHDKLLRTRAL LGCLTFANFSILWTSMAFLLAAPPFSYSEGMIGLFGLAGAAGALGARPAGGFADKGKS HLTTTFGLLLLLLSWLAIWLGHTSVLALIIGILVLDLTVQGVHITNQTVIYRLHPDAR NRLTAGYMTSYFIGGAAGSLISASAWQHAGWAGVCLAGVTVALLNLLVWWRGFHRQEA VN" misc_feature 2959480..2960595 /locus_tag="STM2812" /note="Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily; Region: MFS_NepI_like; cd17324" /db_xref="CDD:340882" misc_feature order(2959510..2959515,2959522..2959527,2959534..2959536, 2959630..2959632,2959780..2959782,2959786..2959794, 2959801..2959803,2959861..2959863,2959870..2959875, 2959882..2959884,2960101..2960103,2960110..2960115, 2960122..2960130,2960137..2960139,2960221..2960223, 2960233..2960235,2960383..2960388,2960398..2960400, 2960410..2960412,2960455..2960457,2960464..2960469, 2960476..2960481,2960488..2960490) /locus_tag="STM2812" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340882" gene 2960989..2961655 /gene="emrR" /locus_tag="STM2813" /db_xref="GeneID:1254336" regulatory 2960989..2960997 /regulatory_class="minus_35_signal" /gene="emrR" /locus_tag="STM2813" /note="putative -35_signal for emrR; RegulonDB:STMLTH004562" regulatory 2961013..2961021 /regulatory_class="minus_10_signal" /gene="emrR" /locus_tag="STM2813" /note="putative -10_signal for emrR; RegulonDB:STMLTH004562" regulatory 2961111..2961116 /regulatory_class="ribosome_binding_site" /gene="emrR" /locus_tag="STM2813" /note="putative RBS for emrR; RegulonDB:STMS1H002883" CDS 2961125..2961655 /gene="emrR" /locus_tag="STM2813" /note="MarR family; similar to E. coli regulator of plasmid mcrB operon (microcin B17 synthesis) (AAC75731.1); Blastp hit to AAC75731.1 (176 aa), 93% identity in aa 1 - 175" /codon_start=1 /transl_table=11 /product="transcriptional repressor of emrAB operon" /protein_id="NP_461739.1" /db_xref="GeneID:1254336" /translation="MDSSFTPIEQMLKFRASRHEDFPYQEILLTRLCMHMQGKLLENR NKMLKAQGINETLFMALITLESQENHSIQPSELSCALGSSRTNATRIADELEKRGWIE RRESDNDRRCLHLQLTEKGQAFLQEVLPPQHHCLHQLWSSLSTAEKDQLEHITRKLLT RLDQMEQEGTVLEALR" misc_feature 2961125..2961652 /gene="emrR" /locus_tag="STM2813" /note="transcriptional repressor MprA; Provisional; Region: PRK10870" /db_xref="CDD:182795" gene 2961770..2962954 /gene="emrA" /locus_tag="STM2814" /db_xref="GeneID:1254337" regulatory 2961770..2961775 /regulatory_class="ribosome_binding_site" /gene="emrA" /locus_tag="STM2814" /note="putative RBS for emrA; RegulonDB:STMS1H002884" CDS 2961782..2962954 /gene="emrA" /locus_tag="STM2814" /note="similar to E. coli multidrug resistance secretion protein (AAC75732.1); Blastp hit to AAC75732.1 (390 aa), 89% identity in aa 1 - 390" /codon_start=1 /transl_table=11 /product="multidrug resistance secretion protein" /protein_id="NP_461740.1" /db_xref="GeneID:1254337" /translation="MSANAEIQTPQQPAKKKGKRKTALLLLTLLFVIIAVAYGIYWFL VLRHIEETDDAYVAGNQVQIMAQVSGSVTKVWADNTDFVKEGDVLVTLDQTDAKQAFE KAKTALASSVRQTHQLMINSKQLQANIDVQKTALAQAQSDLNRRVPLGNANLIGREEL QHARDAVASAQAQLDVAIQQYNANQAMILNSNLEDQPAVQQAATEVRNAWLALERTRI VSPMTGYVSRRAVQPGAQISPTTPLMAVVPATDLWVDANFKETQLANMRIGQPVTVIT DIYGDDVKYTGKVVGLDMGTGSAFSLLPAQNATGNWIKVVQRLPVRVELDARQLEQHP LRIGLSTLVTVDTANRDGQVLASQVRTTPVAESNAREINLAPVNKLIDDIVQANAG" misc_feature 2961782..2962951 /gene="emrA" /locus_tag="STM2814" /note="multidrug efflux MFS transporter periplasmic adaptor subunit EmrA; Region: PRK15136" /db_xref="CDD:185090" gene 2962959..2964509 /gene="emrB" /locus_tag="STM2815" /db_xref="GeneID:1254338" regulatory 2962959..2962964 /regulatory_class="ribosome_binding_site" /gene="emrB" /locus_tag="STM2815" /note="putative RBS for emrB; RegulonDB:STMS1H002885" CDS 2962971..2964509 /gene="emrB" /locus_tag="STM2815" /note="similar to E. coli multidrug resistance; probably membrane translocase (AAC75733.1); Blastp hit to AAC75733.1 (512 aa), 95% identity in aa 1 - 512" /codon_start=1 /transl_table=11 /product="putative MFS superfamily multidrug transport protein" /protein_id="NP_461741.1" /db_xref="GeneID:1254338" /translation="MQQQKPLEGAQLVIMTIALSLATFMQVLDSTIANVAIPTIAGNL GSSLSQGTWVITSFGVANAISIPLTGWLAKRFGEVKLFMWSTVAFAAASWACGVSSSL NMLIFFRVVQGVVAGPLIPLSQSLLLNNYPPAKRSIALALWSMTVIVAPICGPILGGY ISDNYHWGWIFFINVPIGIAVVLMTLHTLRGRETHTERRRIDAVGLALLVIGIGSLQI MLDRGKELDWFSSQEIIILTVVAVIAISFLIVWELTDDHPIVDLSLFKSRNFTIGCLC ISLAYMLYFGAIVLLPQLLQEVYGYTATWAGLASAPVGIIPVILSPIIGRFAHKLDMR RLVTFSFIMYAVCFYWRAWTFEPGMDFGASAWPQFIQGFAVACFFMPLTTITLSGLPP ERLAAASSLSNFTRTLAGSIGTSITTTMWTDRESLHHAQLTESVTAYNPNAQTMYDKL EGLGMTHQQASGWIAQQITNQGLIISANEIFWMSAGIFLVLLGLVWFAKPPFGAGGGG GGAH" misc_feature 2962980..2964476 /gene="emrB" /locus_tag="STM2815" /note="multidrug efflux MFS transporter permease subunit EmrB; Region: EmrB; NF000391" /db_xref="CDD:411083" gene complement(2964558..2965933) /locus_tag="STM2816" /db_xref="GeneID:1254339" CDS complement(2964558..2965928) /locus_tag="STM2816" /codon_start=1 /transl_table=11 /product="putative glycoporin" /protein_id="NP_461742.1" /db_xref="GeneID:1254339" /translation="MKAKYLALMIGACFSHNLWAANNITIEQRLAELEQRVVNAEKRA SDAEAQIRSLKQQQVAATPTVNVQSAEPIAADKTPPKLTLSGFSDIKFYGDVEFNMDA ASRSGSLTSTRTSANKDWAPGTNERWDINGRLLLGFDGYQRLDNGNFAGFSVQPLADL TGKMNLDDAVFFFGRENDWKIKVGRFEAYDMFPLNQDTFIEYSGNTANDLYSDGYGYI YMMKEGRGRSDSGGNFLLSKTIDNWYFEVNTLLENGSTLYTEKQYHGMDLSNDKNVAY VRPVIAWQNGRFSTAIAMESNVVNNAYGYYENGKWIDQSDRTGYGFTMTWNGQKTDPE DGAVINLNTAYMDATDETDFTAGVNALWHRFELGYIYAHNKIEAFNATNIDAVCEDDC WVTDPGNYDIHTIHASYLFPNVMDMKNFNIYLGAYASWVEANPNNGDNSEDARYGGRL RFKYFF" misc_feature complement(2965764..2965856) /locus_tag="STM2816" /note="Maltoporin periplasmic N-terminal extension; Region: Sugarporin_N; pfam11471" /db_xref="CDD:431901" misc_feature complement(2964561..2965655) /locus_tag="STM2816" /note="Porin-like glycoporin RafY; Region: Porin_8; pfam16966" /db_xref="CDD:435680" regulatory complement(2965928..2965933) /regulatory_class="ribosome_binding_site" /locus_tag="STM2816" /note="putative RBS for STM2816; RegulonDB:STMS1H002886" gene complement(2966274..2966800) /gene="luxS" /locus_tag="STM2817" /db_xref="GeneID:1254340" CDS complement(2966274..2966789) /gene="luxS" /locus_tag="STM2817" /note="produces autoinducer; acyl-homoserine lactone-signaling molecules; similar to E. coli orf, hypothetical protein (AAC75734.1); Blastp hit to AAC75734.1 (171 aa), 94% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="quorum sensing protein" /protein_id="NP_461743.1" /db_xref="GeneID:1254340" /translation="MPLLDSFAVDHTRMQAPAVRVAKTMNTPHGDAITVFDLRFCIPN KEVMPEKGIHTLEHLFAGFMRDHLNGNGVEIIDISPMGCRTGFYMSLIGTPDEQRVAD AWKAAMADVLKVQDQNQIPELNVYQCGTYQMHSLSEAQDIARHILERDVRVNSNKELA LPKEKLQELHI" misc_feature complement(2966307..2966789) /gene="luxS" /locus_tag="STM2817" /note="S-ribosylhomocysteine lyase; Region: PRK02260" /db_xref="CDD:179399" regulatory complement(2966795..2966800) /regulatory_class="ribosome_binding_site" /gene="luxS" /locus_tag="STM2817" /note="putative RBS for luxS; RegulonDB:STMS1H002887" gene complement(2966939..2968511) /gene="gshA" /locus_tag="STM2818" /db_xref="GeneID:1254341" CDS complement(2966939..2968495) /gene="gshA" /locus_tag="STM2818" /EC_number="6.3.2.2" /note="glutamate--cysteine ligase. (SW:GSH1_SALTY)" /codon_start=1 /transl_table=11 /product="gamma-glutamate-cysteine ligase" /protein_id="NP_461744.1" /db_xref="GeneID:1254341" /translation="MIPDVSQALAWLEKHPQALKGIQRGLERETLRVNADGTLATTGH PEALGSALTHKWITTDFAEALLEFITPVDGDIQHMLTFMRDLHRYTARKLGDERMWPL SMPCYIAEGQDIELAQYGTSNTGRFKTLYREGLKNRYGALMQTISGVHYNFSLPMAFW QAKCGVTEGEAAKEKISAGYFRLIRNYYRFGWVIPYLFGASPAICSSFLQGKPTTLPF EKTDCGMYYLPYATSLRLSDLGYTNKSQSNLGITFNDLHEYVAGLKRAIKTPSEEYAR IGVEKDGKRLQINSNVLQIENELYAPIRPKRVTRSGESPSDALLRGGIEYIEVRSLDI NPFSPIGVDEQQVRFLDLFMVWCVLADAPEMSSDELLCTRTNWNRVILEGRKPGLTLG IGCETAQFPLPKVGKDLFRDLKRVAQTLDSIHGGEEYQKVCDELVACFDNPELTFSAR ILRSMIDEGIGGTGKAFGEAYRNLLREEPLEILQEEEFIAERDASVRRQQEIEAADTE PFAAWLAKHA" misc_feature complement(2966945..2968480) /gene="gshA" /locus_tag="STM2818" /note="glutamate--cysteine ligase; Region: glu_cys_ligase; TIGR01434" /db_xref="CDD:213621" regulatory complement(2968506..2968511) /regulatory_class="ribosome_binding_site" /gene="gshA" /locus_tag="STM2818" /note="putative RBS for gshA; RegulonDB:STMS1H002888" gene complement(2968572..2969014) /gene="yqaA" /locus_tag="STM2819" /db_xref="GeneID:1254342" CDS complement(2968572..2968997) /gene="yqaA" /locus_tag="STM2819" /note="similar to E. coli orf, hypothetical protein (AAC75736.1); Blastp hit to AAC75736.1 (142 aa), 90% identity in aa 1 - 141" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461745.1" /db_xref="GeneID:1254342" /translation="MSDGLSLLSLFASSFLSATLLPGNSEVVLVAMLVSGVSHPWVLV LTATMGNSLGGVTNVILGRFFPLRKTSRWQEKATGWLKRYGAATLLLSWMPVIGDLLC LLAGWMRIPWGRTIFFLCLGKALRYVALAAATVQGMMWW" misc_feature complement(2968584..2968952) /gene="yqaA" /locus_tag="STM2819" /note="Uncharacterized membrane protein YqaA, VTT domain [Function unknown]; Region: YqaA; COG1238" /db_xref="CDD:440851" gene complement(2968994..2969569) /gene="yqaB" /locus_tag="STM2820" /db_xref="GeneID:1254343" CDS complement(2968994..2969560) /gene="yqaB" /locus_tag="STM2820" /note="similar to E. coli putative phosphatase (AAC75737.1); Blastp hit to AAC75737.1 (188 aa), 87% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="putative phosphoglucomutase" /protein_id="NP_461746.1" /db_xref="GeneID:1254343" /translation="MYARYAGLIFDMDGTLLDTEPTHRKAWREVLGRYGLRFDEQAMV ALNGSPTWLIAQSIIELNHADLDPLSLAREKTDAVKSILLDCVEPLPLVEVVKAWHGR RPMSVGTGSESAIAEALLAHLGLRRYFDAVVAADHVQHHKPAPDTFLLCAQRMGVMPT QCVVFEDADFGLQAARAAGMDAVDVRLL" misc_feature complement(2968997..2969560) /gene="yqaB" /locus_tag="STM2820" /note="fructose-1-phosphate/6-phosphogluconate phosphatase; Region: PRK10725" /db_xref="CDD:182679" misc_feature complement(order(2969048..2969053,2969060..2969065, 2969135..2969137,2969231..2969236,2969516..2969530)) /gene="yqaB" /locus_tag="STM2820" /note="active site" /db_xref="CDD:319808" misc_feature complement(order(2969048..2969053,2969060..2969065, 2969135..2969137,2969231..2969236,2969516..2969530)) /gene="yqaB" /locus_tag="STM2820" /note="active site" /db_xref="CDD:319808" regulatory complement(2969009..2969014) /regulatory_class="ribosome_binding_site" /gene="yqaA" /locus_tag="STM2819" /note="putative RBS for yqaA; RegulonDB:STMS1H002889" regulatory complement(2969564..2969569) /regulatory_class="ribosome_binding_site" /gene="yqaB" /locus_tag="STM2820" /note="putative RBS for yqaB; RegulonDB:STMS1H002890" gene complement(2969932..2970005) /locus_tag="STM2821" /db_xref="GeneID:1254344" tRNA complement(2969932..2970005) /locus_tag="STM2821" /product="tRNA-Arg" /db_xref="GeneID:1254344" gene complement(2970202..2970275) /locus_tag="STM2822" /db_xref="GeneID:1254345" tRNA complement(2970202..2970275) /locus_tag="STM2822" /product="tRNA-Arg" /db_xref="GeneID:1254345" gene complement(2970341..2970414) /locus_tag="STM2823" /db_xref="GeneID:1254346" tRNA complement(2970341..2970414) /locus_tag="STM2823" /product="tRNA-Arg" /db_xref="GeneID:1254346" gene complement(2970480..2970553) /locus_tag="STM2824" /db_xref="GeneID:1254347" tRNA complement(2970480..2970553) /locus_tag="STM2824" /product="tRNA-Arg" /db_xref="GeneID:1254347" gene complement(2970560..2970649) /locus_tag="STM2825" /db_xref="GeneID:1254348" tRNA complement(2970560..2970649) /locus_tag="STM2825" /product="tRNA-Ser" /db_xref="GeneID:1254348" gene complement(2970955..2971152) /gene="csrA" /locus_tag="STM2826" /db_xref="GeneID:1254349" CDS complement(2970955..2971140) /gene="csrA" /locus_tag="STM2826" /note="carbon storage regulator (SW:CSRA_ECOLI)" /codon_start=1 /transl_table=11 /product="carbon storage regulator" /protein_id="NP_461747.1" /db_xref="GeneID:1254349" /translation="MLILTRRVGETLMIGDEVTVTVLGVKGNQVRIGVNAPKEVSVHR EEIYQRIQAEKSQQSSY" misc_feature complement(2970961..2971140) /gene="csrA" /locus_tag="STM2826" /note="carbon storage regulator CsrA; Region: PRK01712" /db_xref="CDD:234973" regulatory complement(2971147..2971152) /regulatory_class="ribosome_binding_site" /gene="csrA" /locus_tag="STM2826" /note="putative RBS for csrA; RegulonDB:STMS1H002892" gene complement(2971375..2974015) /gene="alaS" /locus_tag="STM2827" /db_xref="GeneID:1254350" CDS complement(2971375..2974005) /gene="alaS" /locus_tag="STM2827" /EC_number="6.1.1.7" /note="similar to E. coli alanyl-tRNA synthetase (AAC75739.1); Blastp hit to AAC75739.1 (876 aa), 95% identity in aa 1 - 876" /codon_start=1 /transl_table=11 /product="alanyl-tRNA synthetase" /protein_id="NP_461748.1" /db_xref="GeneID:1254350" /translation="MSKSTAEIRQAFLDFFHSKGHQVVASSSLVPNNDPTLLFTNAGM NQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDY FKHDAIQFAWELLTGENWFALPKERLWVTVYETDDEAYEIWEKEVGIPRERIIRIGDN KGAPYASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQ FNRQADGTMEPLPKPSVDTGMGLERIAAVLQHVNSNYDIDLFRTLIEAVAKVTGATDL GNKSLRVIADHIRSCAFLVADGVLPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKL VGPLIEVMGSAGEELKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLQGDTLDG ETAFRLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASGFGADYNAMI RVDSASEFKGYDHLELNGKVTALFVDGKAVEAINAGQEAVVVLDQTPFYAESGGQVGD KGELKGAGFTFAVDDTQKYGQAIGHLGKLSAGALKVGDAVQADVDEARRARIRLNHSA THLMHAALRQVLGTHVAQKGSLVSDKVLRFDFSHNEAMKPSEIREVEDLVNAQIRRNL PIETNIMDLDAAKAKGAMALFGEKYDERVRVLSMGDFSTELCGGTHASRTGDIGLFRI ISESGTAAGIRRIEAVTGEGAMATVHAQSDRLNDIAHLLKGDSQNLGDKVRAVLERTR QLEKELQQLKDQAAAQESANLSSKAVDLNGVKLLVSELAGIEPKMLRTMVDDLKNQLG STVIVLATVVEGKVSLIAGVSKDVTDRVKAGELIGMVAQQVGGKGGGRPDMAQAGGTD AAALPAALASVQGWVSAKLQ" misc_feature complement(2971381..2973999) /gene="alaS" /locus_tag="STM2827" /note="Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: AlaS; COG0013" /db_xref="CDD:439784" regulatory complement(2974010..2974015) /regulatory_class="ribosome_binding_site" /gene="alaS" /locus_tag="STM2827" /note="putative RBS for alaS; RegulonDB:STMS1H002893" gene complement(2974241..2974751) /gene="oraA" /locus_tag="STM2828" /db_xref="GeneID:1254351" CDS complement(2974241..2974741) /gene="oraA" /locus_tag="STM2828" /note="similar to E. coli regulator, OraA protein (AAC75740.1); Blastp hit to AAC75740.1 (166 aa), 87% identity in aa 1 - 166" /codon_start=1 /transl_table=11 /product="regulator" /protein_id="NP_461749.1" /db_xref="GeneID:1254351" /translation="MSEPTSRRPAYARLLDRAVRILAVRDHSEQELRRKLSAPVMGKN GPEEIDATADDYERVIAWCHEHHYLDDERFVMRFIASRSRKGYGPARIRQELNQKGIS RESTEKAMRECEIDWSEMAREQAVRKYGEPLPSNFSEKVKVQRFLLYRGYLMDNIQQI WRNFAD" misc_feature complement(2974244..2974735) /gene="oraA" /locus_tag="STM2828" /note="recombination regulator RecX; Reviewed; Region: recX; PRK00117" /db_xref="CDD:234646" regulatory complement(2974746..2974751) /regulatory_class="ribosome_binding_site" /gene="oraA" /locus_tag="STM2828" /note="putative RBS for oraA; RegulonDB:STMS1H002894" gene complement(2974858..2976032) /gene="recA" /locus_tag="STM2829" /db_xref="GeneID:1254352" CDS complement(2974858..2975919) /gene="recA" /locus_tag="STM2829" /note="contains proteinase and nuclease activity; similar to E. coli DNA strand exchange and renaturation, DNA-dependent ATPase, DNA- and ATP-dependent coprotease (AAC75741.1); Blastp hit to AAC75741.1 (353 aa), 97% identity in aa 1 - 353" /codon_start=1 /transl_table=11 /product="DNA strand exchange and recombination protein" /protein_id="NP_461750.1" /db_xref="GeneID:1254352" /translation="MAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTG SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDP VYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEI GDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKF YASVRLDIRRIGAVKEGDNVVGSETRVKVVKNKIAAPFKQAEFQILYGEGINFYGELV DLGVKEKLIEKAGAWYSYNGEKIGQGKANATTWLKENPATAKEIEKRVRELLLSNQNA TPDFAVDDSEGVAETNEDF" misc_feature complement(2974876..2975919) /gene="recA" /locus_tag="STM2829" /note="recombinase A; Provisional; Region: recA; PRK09354" /db_xref="CDD:236476" regulatory complement(2975925..2975930) /regulatory_class="ribosome_binding_site" /gene="recA" /locus_tag="STM2829" /note="putative RBS for recA; RegulonDB:STMS1H002895" protein_bind complement(2975982..2976002) /gene="recA" /locus_tag="STM2829" /note="putative binding site for LexA, RegulonDB: STMS1H000243" /bound_moiety="LexA" gene complement(2976004..2976510) /gene="ygaD" /locus_tag="STM2830" /db_xref="GeneID:1254353" CDS complement(2976004..2976501) /gene="ygaD" /locus_tag="STM2830" /note="similar to E. coli orf, hypothetical protein (AAC75742.1); Blastp hit to AAC75742.1 (165 aa), 92% identity in aa 1 - 165" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461751.1" /db_xref="GeneID:1254353" /translation="MTDSELMRLSEQVGLALKARGATVTTAESCTGGWLAKAITDIAG SSAWFERGFVTYSNEAKAQMIGVREETLAQHGAVSEPVVVEMAIGALKAARADFAVAI SGIAGPDGGSEEKPVGTVWFAFASVSGEGITRRECFSGDRESVRRQATTYALQTLWQQ FLQNT" misc_feature complement(2976010..2976501) /gene="ygaD" /locus_tag="STM2830" /note="nicotinamide-nucleotide amidase; Region: PRK03661" /db_xref="CDD:179627" regulatory complement(2976005..2976013) /regulatory_class="minus_10_signal" /gene="ygaD" /locus_tag="STM2830" /note="putative -10_signal for recA; RegulonDB:STMLTH004563" regulatory complement(2976024..2976032) /regulatory_class="minus_35_signal" /gene="ygaD" /locus_tag="STM2830" /note="putative -35_signal for recA; RegulonDB:STMLTH004563" regulatory complement(2976505..2976510) /regulatory_class="ribosome_binding_site" /gene="ygaD" /locus_tag="STM2830" /note="putative RBS for ygaD; RegulonDB:STMS1H002896" gene complement(2976979..2978069) /gene="mltB" /locus_tag="STM2831" /db_xref="GeneID:1254354" CDS complement(2976979..2978058) /gene="mltB" /locus_tag="STM2831" /EC_number="3.2.1.-" /note="similar to E. coli membrane-bound lytic murein transglycosylase B (AAC75743.1); Blastp hit to AAC75743.1 (361 aa), 92% identity in aa 1 - 361" /codon_start=1 /transl_table=11 /product="membrane-bound lytic murein transglycosylase B" /protein_id="NP_461752.1" /db_xref="GeneID:1254354" /translation="MFKRRYVALLPLCVLLAACSSTPKSSETQATTGTPSGGFLLEPQ HNVMQMGGDFANNPNAQQFIDKMVSKHGFDRQQLQEILSQSKRLDYVLRLMDRQAPTT QPPAGPNGAWLRYRKQFITPDNVQNGVAFWNQYEDALNRAWQVYGVPPEIIVGIIGVE TRWGRIMGKTRILDALATLSFNYPRRAEYFSGELETFLLMARDEQDDPLNLKGSFAGA MGYGQFMPSSYKEYAVDFNGDGHINLWDPVDAIGSVANYFKAHGWVKGDMVAVPASGQ APGLANGFKTKYSISQLAAAGLTPQQSLGNHQEASLLRLDIGTGYQYWYGLPNFYTIT RYNHSTHYAMAVWQLGQAVALARVR" misc_feature complement(2976982..2978058) /gene="mltB" /locus_tag="STM2831" /note="murein hydrolase B; Provisional; Region: PRK10760" /db_xref="CDD:236754" regulatory complement(2978064..2978069) /regulatory_class="ribosome_binding_site" /gene="mltB" /locus_tag="STM2831" /note="putative RBS for mltB; RegulonDB:STMS1H002897" gene 2978191..2978875 /gene="srlA" /locus_tag="STM2832" /db_xref="GeneID:1254355" regulatory 2978191..2978199 /regulatory_class="minus_35_signal" /gene="srlA" /locus_tag="STM2832" /note="putative -35_signal for srlA; RegulonDB:STMLTH004564" regulatory 2978215..2978223 /regulatory_class="minus_10_signal" /gene="srlA" /locus_tag="STM2832" /note="putative -10_signal for srlA; RegulonDB:STMLTH004564" regulatory 2978300..2978305 /regulatory_class="ribosome_binding_site" /gene="srlA" /locus_tag="STM2832" /note="putative RBS for srlA; RegulonDB:STMS1H002898" CDS 2978312..2978875 /gene="srlA" /locus_tag="STM2832" /note="one of two IIC components; similar to E. coli PTS system, glucitol/sorbitol-specific IIC component, one of two (AAC75744.1); Blastp hit to AAC75744.1 (187 aa), 96% identity in aa 1 - 187" /codon_start=1 /transl_table=11 /product="PTS family glucitol/sorbitol-specific enzyme IIC component" /protein_id="NP_461753.1" /db_xref="GeneID:1254355" /translation="MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNAL INFIGQQRIERFAQRCAGNPLSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAA ASYSCHSMNGLFPHINPGELFVYLGIASGLTTLGLPLGPLAVSYLLVGLVTNFFRGWV TDLTTAIFEKKMGIQLEQKVHLTGAVS" misc_feature 2978312..2978854 /gene="srlA" /locus_tag="STM2832" /note="PTS system, glucitol/sorbitol-specific, IIC component; Region: EII-GUT; TIGR00821" /db_xref="CDD:129901" gene 2978859..2979843 /gene="srlE" /locus_tag="STM2833" /db_xref="GeneID:1254356" regulatory 2978859..2978864 /regulatory_class="ribosome_binding_site" /gene="srlA" /locus_tag="STM2832" /note="putative RBS for srlE; RegulonDB:STMS1H002899" CDS 2978872..2979843 /gene="srlE" /locus_tag="STM2833" /note="one of two IIC components; similar to E. coli PTS system, glucitol/sorbitol-specific IIB component and second of two IIC components (AAC75745.1); Blastp hit to AAC75745.1 (319 aa), 92% identity in aa 1 - 319" /codon_start=1 /transl_table=11 /product="PTS family, glucitol/sorbitol-specific IIB component" /protein_id="NP_461754.1" /db_xref="GeneID:1254356" /translation="MTRVRIEKGAGGWGGPLELDVTPDKKIVYITAGTRPAIVDKLAQ LTGWQAVDGFKEGEPPEAEIGAAIIDCGGTLRCGIYPKRRIPTINIHSTGKSGPLAQY IVEDIYVSGVKEENITLVGETPASPQPAKTTLGRDYDTSKKITEQSDGLLAKVGMGMG SAVAVLFQSGRDTIDTVLKTILPFMAFVSALIGIIMASGLGDWIAHGLAPLASHPLGL VTLALICSFPLLSPFLGPGAVIAQVIGVLIGVQIGLGNIPPHLALPALFAINAQAACD FIPVGLSLAEAKQDTVRVGVPSVLVGRFLTGAPTVLIAWFVSGFIYQ" misc_feature 2978872..2979840 /gene="srlE" /locus_tag="STM2833" /note="Phosphotransferase system sorbitol-specific IIB component [Carbohydrate transport and metabolism]; Region: SrlE; COG3732" /db_xref="CDD:442946" gene 2979844..2980217 /gene="slrB" /locus_tag="STM2834" /db_xref="GeneID:1254357" regulatory 2979844..2979849 /regulatory_class="ribosome_binding_site" /gene="slrB" /locus_tag="STM2834" /note="putative RBS for slrB; RegulonDB:STMS1H002900" CDS 2979855..2980217 /gene="slrB" /locus_tag="STM2834" /note="similar to E. coli PTS system, glucitol/sorbitol-specific enzyme IIA component (AAC75746.1); Blastp hit to AAC75746.1 (123 aa), 82% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="PTS family glucitol/sorbitol-specific protein" /protein_id="NP_461755.1" /db_xref="GeneID:1254357" /translation="MSVIYQTTITRIGQSAKEALGEQMLITFREGAPADIEEFCFIHC HGELTGALQPGARCELGQHCYPVTAVGSVAEQNLRELGHITLRFDGLREAEFPGTVHV AGPVPDDIAPGCILTFVA" misc_feature 2979855..2980214 /gene="slrB" /locus_tag="STM2834" /note="PTS glucitol/sorbitol transporter subunit IIA; Region: PRK10377" /db_xref="CDD:182419" gene 2980216..2981008 /gene="srlD" /locus_tag="STM2835" /db_xref="GeneID:1254358" regulatory 2980216..2980221 /regulatory_class="ribosome_binding_site" /gene="srlD" /locus_tag="STM2835" /note="putative RBS for srlD; RegulonDB:STMS1H002901" CDS 2980229..2981008 /gene="srlD" /locus_tag="STM2835" /EC_number="1.1.1.140" /note="similar to E. coli glucitol (sorbitol)-6-phosphate dehydrogenase (AAC75747.1); Blastp hit to AAC75747.1 (259 aa), 97% identity in aa 1 - 259" /codon_start=1 /transl_table=11 /product="glucitol (sorbitol)-6-phosphate dehydrogenase" /protein_id="NP_461756.1" /db_xref="GeneID:1254358" /translation="MNQVAVVIGGGQTLGAFLCRGLAEEGYRVAVVDIQSDKAANVAQ EINADFGEGMAYGFGADATSEQSVLALSRGVDEIFGRVDLLVYSAGIAKAAFISDFQL GDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGKVGSKHNSGYSAAKFG GVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQSLLPQYATKLGIKPDEVEQYYIDK VPLKRGCDYQDVLNMLLFYASPKASYCTGQSINVTGGQVMF" misc_feature 2980229..2981005 /gene="srlD" /locus_tag="STM2835" /note="sorbitol-6-phosphate dehydrogenase; Provisional; Region: PRK12384" /db_xref="CDD:183489" gene 2981072..2981443 /gene="gutM" /locus_tag="STM2836" /db_xref="GeneID:1254359" regulatory 2981072..2981077 /regulatory_class="ribosome_binding_site" /gene="gutM" /locus_tag="STM2836" /note="putative RBS for gutM; RegulonDB:STMS1H002902" CDS 2981084..2981443 /gene="gutM" /locus_tag="STM2836" /note="similar to E. coli glucitol operon activator (AAC75748.1); Blastp hit to AAC75748.1 (119 aa), 83% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="putative glucitol (srl) operon regulatory protein" /protein_id="NP_461757.1" /db_xref="GeneID:1254359" /translation="MVSTLITVAVIAWCAQLALGGWQISRFNRAFDKLSQQGRVGVGR SGGRFKPRVVVAVALDEQQRVTDTLLMKGLTVFARPVKIAAMQGKHLHELQPDVIFPH DSLAQNALSLALKLKHG" misc_feature 2981084..2981437 /gene="gutM" /locus_tag="STM2836" /note="transcriptional regulator GutM; Region: PRK10234" /db_xref="CDD:182322" gene 2981625..2982414 /gene="srlR" /locus_tag="STM2837" /db_xref="GeneID:1254360" regulatory 2981625..2981630 /regulatory_class="ribosome_binding_site" /gene="srlR" /locus_tag="STM2837" /note="putative RBS for srlR; RegulonDB:STMS1H002903" CDS 2981641..2982414 /gene="srlR" /locus_tag="STM2837" /note="DeoR family; similar to E. coli regulator for gut (srl), glucitol operon (AAC75749.1); Blastp hit to AAC75749.1 (257 aa), 94% identity in aa 1 - 257" /codon_start=1 /transl_table=11 /product="transcriptional repressor for glucitol operon" /protein_id="NP_461758.1" /db_xref="GeneID:1254360" /translation="MKPRQRQAAILEHLQKQGKCSVEELAQYFDTTGTTIRKDLVILE NAGTVIRTYGGVVLNKEESDPPIDHKTLINTHKKALIAAAAVKYIHDGDSIILDAGST VLQMVPLLSRFSNITVMTNSLHIVNALSELDNEQTILMPGGTFRKKSASFHGQLAENA FEQFSFDKLFMGTDGIDLNVGVTTFNEVYTVSNAMCNAAREVILMADSSKFGRKSPNV VCSLETVDKLITDAGIDPAFRQALEAKGIEVIITGESNE" misc_feature 2981641..2982408 /gene="srlR" /locus_tag="STM2837" /note="DNA-binding transcriptional repressor; Region: srlR; PRK10434" /db_xref="CDD:182457" gene 2982428..2983372 /gene="gutQ" /locus_tag="STM2838" /db_xref="GeneID:1254361" regulatory 2982428..2982433 /regulatory_class="ribosome_binding_site" /gene="gutQ" /locus_tag="STM2838" /note="putative RBS for gutQ; RegulonDB:STMS1H002904" CDS 2982446..2983372 /gene="gutQ" /locus_tag="STM2838" /note="similar to E. coli orf, hypothetical protein (AAC75750.1); Blastp hit to AAC75750.1 (308 aa), 92% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="putative polysialic acid capsule expression protein" /protein_id="NP_461759.3" /db_xref="GeneID:1254361" /translation="MLELQEASRLPERLGDDFVRAANIIIHCEGKVIVSGIGKSGHIG KKIAATLASTGTPAFFVHPAEALHGDLGMIESRDVMLFISYSGGAKELDLIIPRLEDK SVALLAMTGKLHSPLGRAAKAVLDISVEREACPMHLAPTSSTVNTLMMGDALAMAVMQ ARGFNEEDFARSHPAGALGARLLNNVHHLMRQGDAIPQVMLATSVMDAMLELSRTGLG LVAVCDEQHVVKGVFTDGDLRRWLVGGGALTTPVSEAMTPNGITLQAQSRAIDAKELL MKRKITAAPVVDENGKLTGAINLQDFYQAGII" misc_feature 2982446..2983369 /gene="gutQ" /locus_tag="STM2838" /note="arabinose-5-phosphate isomerase GutQ; Region: gutQ; PRK11543" /db_xref="CDD:183186" gene complement(2983369..2984898) /gene="ygaA" /locus_tag="STM2839" /db_xref="GeneID:1254362" CDS complement(2983369..2984889) /gene="ygaA" /locus_tag="STM2839" /note="similar to E. coli putative 2-component transcriptional regulator (AAC75751.1); Blastp hit to AAC75751.1 (529 aa), 88% identity in aa 26 - 529" /codon_start=1 /transl_table=11 /product="putative EBP family regulator" /protein_id="NP_461760.1" /db_xref="GeneID:1254362" /translation="MSFSVEVLAGIAIELQRGIGHQDRFQRLITTLRQVLACDASALL RYESRQFIPLAIDGLAQDVLGRRFTLEGHPRLEAIARAGDVVRFPADSDLPDPYDGLI PGQESLKVHACVGLPLFAGQNLIGALTLDAMTPEQFEVFSDEELRLVAALAAGALSNA LLIEQLESQNMLPGSSGVFEPIKETHMIGLSPAMTQLKKEIEIVAGSDLNVLIGGETG TGKELVAKAIHQGSPRAVNPLVYLNCAALPESVAESELFGHVKGAFTGAISNRSGKFE MADNGTLFLDEIGELSLALQAKLLRVLQYGDIQRVGDDRSLRVDVRVLAATNRDLREE VLAGRFRADLFHRLSVFPLFVPPLRERGDDVVLLAGYFCEQCRLRLGLSRVVLSPGAR RHLLNYGWPGNVRELEHAIHRAVVLARATRAGDEVILEAQHFALSEDVLPAPPAESFL ALPTCRNLRESTENFQREMIRQALAQNNHNWAASARALETDVANLHRLAKRLGLKD" misc_feature complement(2983372..2984883) /gene="ygaA" /locus_tag="STM2839" /note="nitric oxide reductase transcriptional regulator NorR; Region: PRK05022" /db_xref="CDD:235331" regulatory complement(2984893..2984898) /regulatory_class="ribosome_binding_site" /gene="ygaA" /locus_tag="STM2839" /note="putative RBS for ygaA; RegulonDB:STMS1H002905" gene 2985066..2986514 /locus_tag="STM2840" /db_xref="GeneID:1254363" regulatory 2985066..2985071 /regulatory_class="ribosome_binding_site" /locus_tag="STM2840" /note="putative RBS for STM2840; RegulonDB:STMS1H002906" CDS 2985075..2986514 /locus_tag="STM2840" /note="similar to E. coli putative flavodoxin (AAC75752.1); Blastp hit to AAC75752.1 (479 aa), 92% identity in aa 1 - 479" /codon_start=1 /transl_table=11 /product="putative flavoprotein" /protein_id="NP_461761.1" /db_xref="GeneID:1254363" /translation="MSILVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIREEK NVLIDTVDHKFSREFVQNLRSEIDLADIDYIIINHAEEDHAGALTELMAQIPDTPIYC TANAIDSINGHHHHPEWNFKVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMTYMTGDA VLFSNDAFGQHYCDERLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNL PVDMIATSHGVVWRDNPTQIVELYLKWATDYQEDRITIFYDTMSNNTRMMADAIAQGI NEVDPNVAVKIFNVARSDKNEILTNVFRSKGVLVGTSTMNNVMMPKIAGLVEEMTGLR FRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLSLKAKWRPDLDALELCRQHGRDI ARQWALAPLPETTQQIAPVEETITCTAADLGPKMQCSVCQWIYDPALGEPLQDVAPGT PWNDVPDNFLCPECSLGKDVFDVLATEAK" misc_feature 2985075..2986511 /locus_tag="STM2840" /note="anaerobic nitric oxide reductase flavorubredoxin; Provisional; Region: PRK05452" /db_xref="CDD:235475" gene 2986500..2987644 /gene="ygbD" /locus_tag="STM2841" /db_xref="GeneID:1254364" regulatory 2986500..2986505 /regulatory_class="ribosome_binding_site" /gene="ygbD" /locus_tag="STM2841" /note="putative RBS for ygbD; RegulonDB:STMS1H002907" CDS 2986511..2987644 /gene="ygbD" /locus_tag="STM2841" /note="similar to E. coli putative oxidoreductase (AAC75753.1); Blastp hit to AAC75753.1 (377 aa), 85% identity in aa 1 - 375" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_461762.1" /db_xref="GeneID:1254364" /translation="MSRGIIIIGSGFAARQLVKNIRKQDAHVPLTLIAADSMDEYNKP DLSHVISQSQRADDLTRQLAGEFAEQFNLRRFPHTWVADIDADAHVVKSQDKQWQYDK LVLATGATAFVPPIAGRELMLTLNSQQEYRACETQLRDAQRVLIVGGGLIGSELAMDF CRAGKTVTLMDNAASLLASLMPPEVSSRLQHHLTDMGVHLLLKSQLQKLEKTEAGIRA TLVSQHSIEVDAVIAATGLRPETALARRAGVAVNRGVCVDSYLQTSHPDIYAIGDCAE INGQVLPFLQPIQLSAMYLAKNLLGGNAPLKLPAMLVKVKTPELPLHLAGETQRRDLS WHITAESDGMIAKGMSGEGQLRAFVVSEDRMKEAFALLKTLSV" misc_feature 2986511..2987641 /gene="ygbD" /locus_tag="STM2841" /note="NADH:flavorubredoxin reductase NorW; Region: PRK04965" /db_xref="CDD:179902" gene complement(2987741..2989997) /gene="hypF" /locus_tag="STM2842" /db_xref="GeneID:1254365" CDS complement(2987741..2989981) /gene="hypF" /locus_tag="STM2842" /note="similar to E. coli transcriptional regulatory protein (AAC75754.1); Blastp hit to AAC75754.1 (750 aa), 84% identity in aa 1 - 744" /codon_start=1 /transl_table=11 /product="hydrogenase maturation protein" /protein_id="NP_461763.1" /db_xref="GeneID:1254365" /translation="MAIDTPSGVQLRIRGKVQGVGFRPFVWQLAQQLRLHGDVCNDGD GVVVRLLEEPSQFIAALYQDCPPLARIDSVEHASLVWERAPTDFTIRQSAGGSMNTQI VPDAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCP ECDSEYRDPYDRRFHAQPVACPSCGPHLEWRSQHERAEKEAALQAAVAQLNAGGIIAV KGLGGFHLACDARNANAVAMLRARKHRPAKPLAVMLPTAQTLPSAARSLLTTPAAPIV LVDKQYVPSLSEGIAPGLTEVGVMLPANPLQHLLLQELNYPLVMTSGNLSGKPPAITN EQALDDLHDIADGFLLHNRDIVQRMDDSVVRDSGEMLRRSRGYVPDAIALPPGFRDVP PILCLGADLKNTFCLVRGAQAVVSQHLGDLSDDGIQAQWREALRLIQSIYDFTPERIV CDAHPGYVSSQWASEMRLPTETVLHHHAHAAACLAEHGWPLDGGEVIALTVDGIGMGE NGALWGGECLRVNYRECEHLGGLPAVALPGGDLAAKHPWRNLLAQCLRFVPDWQDYPE TAGLQQQNWNVLARAIERGVNAPLASSCGRLFDAVAAALRCAPASLSYEGEAACALEA LASQCANVEHPVTMPLNGAQLDVAVFWRQWLNWQATPAQRAWAFHDALACGFATLMRQ QATARGITTLVFSGGVIHNRLLRARLAFYLSDFKLLFPQRLPAGDGGLSFGQGVIAAA RALSEV" misc_feature complement(2987750..2989960) /gene="hypF" /locus_tag="STM2842" /note="Hydrogenase maturation factor HypF (carbamoyltransferase) [Posttranslational modification, protein turnover, chaperones]; Region: HypF; COG0068" /db_xref="CDD:439838" regulatory complement(2989992..2989997) /regulatory_class="ribosome_binding_site" /gene="hypF" /locus_tag="STM2842" /note="putative RBS for hypF; RegulonDB:STMS1H002908" gene complement(2990127..2990684) /gene="hydN" /locus_tag="STM2843" /db_xref="GeneID:1254366" CDS complement(2990127..2990672) /gene="hydN" /locus_tag="STM2843" /note="similar to E. coli involved in electron transport from formate to hydrogen, Fe-S centers (AAC75755.1); Blastp hit to AAC75755.1 (175 aa), 95% identity in aa 1 - 173" /codon_start=1 /transl_table=11 /product="electron transport protein (FeS center) from formate to hydrogen" /protein_id="NP_461764.1" /db_xref="GeneID:1254366" /translation="MNRFIIADASKCIGCRTCEVACVVSHQENQDCASLTPETFLPRI HVIKGVNVSTATLCRQCEDAPCANVCPNGAISRDKGFVHVMQERCIGCKTCVVACPYG AMEVVVRPVVRNSGAGLNVRAEKAEANKCDLCHHREAGPACMAACPTHALICVDRNKL EQLSAEKRRRAALDSTASLLF" misc_feature complement(2990130..2990672) /gene="hydN" /locus_tag="STM2843" /note="electron transport protein HydN; Region: PRK10330" /db_xref="CDD:182382" regulatory complement(2990679..2990684) /regulatory_class="ribosome_binding_site" /gene="hydN" /locus_tag="STM2843" /note="putative RBS for hydN; RegulonDB:STMS1H002909" gene complement(2990873..2991687) /locus_tag="STM2844" /db_xref="GeneID:1254367" CDS complement(2990873..2991682) /locus_tag="STM2844" /codon_start=1 /transl_table=11 /product="putative periplasmic or exported protein" /protein_id="NP_461765.1" /db_xref="GeneID:1254367" /translation="MLHGKGCKKDVKIIVWSGLLFLCLAARALATGVVGYLPMSDGEY AQKRALKPLLTLPYSVSPDQTWHFRQVGVSGVTLLPEPKKDNEWRISGKDRAGNSWVV PVGRLINLAGNAQFYRADLDRNGIQDLVIWLGNPGLGLAPSAQYIIFTFLKNGRPCVF EPWGFYTATDTGVDDLLDLQGNGRTQLLDMQFDSGYWITNLYQVKDARWQRVHGWFGR LSYPALTRFNHYPGRKLIIKPIAGRNPQTDDLSLTQRCLIRGNVLPGVNQD" regulatory complement(2991682..2991687) /regulatory_class="ribosome_binding_site" /locus_tag="STM2844" /note="putative RBS for STM2844; RegulonDB:STMS1H002910" gene complement(2991709..2992190) /gene="hycI" /locus_tag="STM2845" /db_xref="GeneID:1254368" CDS complement(2991709..2992179) /gene="hycI" /locus_tag="STM2845" /EC_number="3.4.-.-" /note="similar to E. coli protease involved in processing C-terminal end of the large subunit of hydrogenase 3 (AAC75759.1); Blastp hit to AAC75759.1 (156 aa), 91% identity in aa 1 - 155" /codon_start=1 /transl_table=11 /product="protease involved in processing C-terminal end of HycE" /protein_id="NP_461766.1" /db_xref="GeneID:1254368" /translation="MTDVLLCVGNSMMGDDGAGPLLAEMCAAQPKGNWVVIDGGSAPE NDIVAIRELRPQRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLK EDVGEVIFVGIQPDIVGFYYPMTQPIKDAVNIVYQRLEGWQGNGGFAALEAPEA" misc_feature complement(2991739..2992173) /gene="hycI" /locus_tag="STM2845" /note="hydrogenase maturation protease HycI; Region: hycI; TIGR00142" /db_xref="CDD:129247" misc_feature complement(order(2991910..2991912,2991994..2991996, 2992132..2992134)) /gene="hycI" /locus_tag="STM2845" /note="nickel binding site [ion binding]; other site" /db_xref="CDD:99877" gene complement(2992172..2992596) /gene="hycH" /locus_tag="STM2846" /db_xref="GeneID:1254369" CDS complement(2992172..2992582) /gene="hycH" /locus_tag="STM2846" /note="part of the FHL complex; similar to E. coli processing of large subunit (HycE) of hydrogenase 3 (part of the FHL complex) (AAC75760.1); Blastp hit to AAC75760.1 (136 aa), 91% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="protein for processing of HycE" /protein_id="NP_461767.1" /db_xref="GeneID:1254369" /translation="MSEQVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDC LEAALTCPWDEYLAWIATLEAGSDARRKMEGVPKYGEIVIDFNHVQMLARAFDEARAA QTPQQQEWSKLMLSMLYDIHQESAIYLMVRRLRD" misc_feature complement(2992181..2992582) /gene="hycH" /locus_tag="STM2846" /note="formate hydrogenlyase maturation protein HycH; Provisional; Region: PRK15084" /db_xref="CDD:185042" regulatory complement(2992185..2992190) /regulatory_class="ribosome_binding_site" /gene="hycH" /locus_tag="STM2846" /note="putative RBS for hycI; RegulonDB:STMS1H002911" gene complement(2992579..2993357) /gene="hycG" /locus_tag="STM2847" /db_xref="GeneID:1254370" CDS complement(2992579..2993346) /gene="hycG" /locus_tag="STM2847" /note="similar to E. coli hydrogenase activity (AAC75761.1); Blastp hit to AAC75761.1 (255 aa), 96% identity in aa 1 - 255" /codon_start=1 /transl_table=11 /product="hydrogenase activity" /protein_id="NP_461768.1" /db_xref="GeneID:1254370" /translation="MSNLLGPRDANGIPVPMTVDESIASMKASLLKNIKRSAYVYRVD CGGCNGCEIEIFATLSPLFDAERFGIKVVPSPRHADILLFTGAVTRAMRSPALRAWQS APDPKICISYGACGNSGGIFHDLYCVWGGTDKIVPVDVYIPGCPPTPAATLYGFAMAL GLLEQKIHARAPGELDDQPAEILHPDMVQPLRVKVDRAARRLAGYRYGRQIADDYLTQ LGQGEQQVARWLEAENDPRLTEIVTHLNHVVEEARIR" misc_feature complement(2992843..2993253) /gene="hycG" /locus_tag="STM2847" /note="Ni,Fe-hydrogenase III small subunit [Energy production and conversion]; Region: HycG; COG3260" /db_xref="CDD:442491" regulatory complement(2992591..2992596) /regulatory_class="ribosome_binding_site" /gene="hycH" /locus_tag="STM2846" /note="putative RBS for hycH; RegulonDB:STMS1H002912" gene complement(2993346..2993899) /gene="hycF" /locus_tag="STM2848" /db_xref="GeneID:1254371" CDS complement(2993346..2993888) /gene="hycF" /locus_tag="STM2848" /note="similar to E. coli probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) (AAC75762.1); Blastp hit to AAC75762.1 (180 aa), 96% identity in aa 1 - 178; putative quinone oxidoreductase" /codon_start=1 /transl_table=11 /product="hydrogenase 3" /protein_id="NP_461769.1" /db_xref="GeneID:1254371" /translation="MFTFIKKVIKTGTATSSYPLEPIAVDKNFRGKPEHNPQQCIGCA ACVNACPSNALTVETDLATNELAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWK KEDFLQQSRFALCNCRVCNRPFAVQKEIDYAIALLAHNGDSRAENHRESFETCPDCKR QKCLVPSDRIELTRHMKEVS" misc_feature complement(2993349..2993888) /gene="hycF" /locus_tag="STM2848" /note="formate hydrogenlyase complex iron-sulfur subunit; Provisional; Region: PRK12387" /db_xref="CDD:183492" regulatory complement(2993352..2993357) /regulatory_class="ribosome_binding_site" /gene="hycF" /locus_tag="STM2848" /note="putative RBS for hycG; RegulonDB:STMS1H002913" regulatory complement(2993894..2993899) /regulatory_class="ribosome_binding_site" /gene="hycF" /locus_tag="STM2848" /note="putative RBS for hycF; RegulonDB:STMS1H002914" gene complement(2993898..2995607) /gene="hycE" /locus_tag="STM2849" /db_xref="GeneID:1254372" CDS complement(2993898..2995607) /gene="hycE" /locus_tag="STM2849" /note="part of FHL complex; similar to E. coli large subunit of hydrogenase 3 (part of FHL complex) (AAC75763.1); Blastp hit to AAC75763.1 (569 aa), 97% identity in aa 1 - 569" /codon_start=1 /transl_table=11 /product="hydrogenase 3, large subunit" /protein_id="NP_461770.1" /db_xref="GeneID:1254372" /translation="MSEEKLGQQYLAALHQAFPGVVLDEAWQTKDQLTITVKVNYLPE VVEFLYYQQGGWLSVLFGNDERQLCGHYAVYYVLSMEQGTKCWITVRVEVDANKLEFP SVTPRVPAAVWGEREVRDMYGLIPVGLPDERRLVLPDDWPDELYPLRKDSMDYRQRPA PTTDAETYEFINELGDKKNNVVPIGPLHVTSDEPGHFRLFVDGENIIDADYRLFYVHR GMEKLAETRMGYNEVTFLSDRVCGICGFAHSTAYTTSVENAMGIQVPERAQMIRAILL EVERLHSHLLNLGLACHFTGFDSGFMQFFRVRETSMKMAEILTGARKTYGLNLIGGIR RDLLKEDMIQTRQLAQQMRRDVQELVDMLLSTPNMEQRTVGIGRLDPEIARDFSNVGP MVRASGHARDTRADHPFVGYGLLPMEVHSEQGCDVISRLKVRINEVYTSLNMIDFGLD NLPGGPLMVEGFTYIPHRFALGFAEAPRGDDIHWSMTGDNQKLYRWRCRAATYANWPT LRYMLRGNTVSDAPLIIGSLDPCYSCTDRMTVVDVRKKKSKVVPYKELERYSIERKNS PLK" misc_feature complement(2993997..2995445) /gene="hycE" /locus_tag="STM2849" /note="Ni,Fe-hydrogenase III large subunit [Energy production and conversion]; Region: HycE2; COG3261" /db_xref="CDD:442492" gene complement(2995625..2996561) /gene="hycD" /locus_tag="STM2850" /db_xref="GeneID:1254373" CDS complement(2995625..2996548) /gene="hycD" /locus_tag="STM2850" /note="part of FHL complex; similar to E. coli membrane-spanning protein of hydrogenase 3 (part of FHL complex) (AAC75764.1); Blastp hit to AAC75764.1 (307 aa), 90% identity in aa 1 - 307" /codon_start=1 /transl_table=11 /product="hydrogenase 3, membrane subunit" /protein_id="NP_461771.1" /db_xref="GeneID:1254373" /translation="MSVFYPLIQALVLFAVAPLLSGITRVVRARLHNRRGPGVLQEYR DIIKLLGRQSIAPADSGWVFRLTPFVMVGVMLTIATALPVVTVGSPLPQLGDLITLIY LFAIARFFFSIAGLDTGSPFTAIGASREAMLGVLVEPILLLGLWVAAQVAGSTHISNI ADTIYHWPVARSIPLILALCACAFATFIEMGKLPFDLAEAEQELQEGPLTEYSGSGFA VLKWGISLKQLVVLQMFVGVFLPWGQMETFSAGGLLLALVIAVVKLIVGVLVIALFEN SMARLRFCATSRVTWAGFGFAFLAFVSLLAA" misc_feature complement(2995634..2996548) /gene="hycD" /locus_tag="STM2850" /note="Formate hydrogenlyase subunit HyfC [Energy production and conversion]; Region: HyfC; COG0650" /db_xref="CDD:440415" gene complement(2996551..2998390) /gene="hycC" /locus_tag="STM2851" /db_xref="GeneID:1254374" CDS complement(2996551..2998377) /gene="hycC" /locus_tag="STM2851" /note="part of FHL complex; similar to E. coli membrane-spanning protein of hydrogenase 3 (part of FHL complex) (AAC75765.1); Blastp hit to AAC75765.1 (608 aa), 88% identity in aa 1 - 608" /codon_start=1 /transl_table=11 /product="hydrogenase 3, membrane subunit" /protein_id="NP_461772.2" /db_xref="GeneID:1254374" /translation="MSSLSLITSGVAWFAAAAVLAFLFSFHKALSGWIAGIGGAVGSL CTAGAGFTALTSAVTVSGVMPFTGHMLQITPLNAIWLITLGLCGLFVSLFNIDWHRHP QVKANGLLINLLMAAAVCAVVASNLGTMVVMAEIMALCAVFLTGGSKEGKLWFALGRL GTLLLAIACWLVWQRYGTLDLGLLDQRAQQLPLGSDIWLLGVIGFGLLAGIIPLHGWV PQAHANASAPAAALFSTVVMKIGLLGILTLSLLGGNAPLWWGVALLVLGMITAFVGGL YALMEHNIQRLLAYHTLENIGIILLGLGAGVTGIALNQPVLIALGLTGGLYHLLNHSL FKSVLFLGAGSIWFRTGHRDIEKLGGIGKRMPVISIAMLVGLMAMAALPPLNGFAGEW VIYQSFFKLGNSGAFVGRLLGPLLAVGLAITGALAVMCMAKVYGVTFLGAPRTKEAEN ASCAPILMGVSVVALAICCVLGGVAAPWLLPMISTAVPLPLETAHTTVSQPMITLLLV ACPLLPFIIMAMFKGNRLPSRSRGAAWVCGYDHEQSMVITAHGFAMPVKEAFAPVLKL RKWLNPVSLIPGWQNAAAAVLFRRLALIELAVLVVIVVSRGA" misc_feature complement(2996554..2998305) /gene="hycC" /locus_tag="STM2851" /note="formate hydrogenlyase subunit 3; Reviewed; Region: PRK08042" /db_xref="CDD:181206" regulatory complement(2996556..2996561) /regulatory_class="ribosome_binding_site" /gene="hycD" /locus_tag="STM2850" /note="putative RBS for hycD; RegulonDB:STMS1H002915" gene complement(2998377..2998997) /gene="hycB" /locus_tag="STM2852" /db_xref="GeneID:1254375" CDS complement(2998377..2998985) /gene="hycB" /locus_tag="STM2852" /note="part of FHL complex; similar to E. coli probable small subunit of hydrogenase-3, iron-sulfur protein (part of formate hydrogenlyase (FHL) complex) (AAC75766.1); Blastp hit to AAC75766.1 (203 aa), 95% identity in aa 1 - 202" /codon_start=1 /transl_table=11 /product="hydrogenase-3, iron-sulfur subunit" /protein_id="NP_461773.1" /db_xref="GeneID:1254375" /translation="MNRFVIADSTLCIGCHTCEAACSETHRQHGLQSMPRLKVMLNEK ESAPQLCHHCEDAPCATVCPVNAINRVDGAVQLNESLCVSCKLCGIACPFGAIEFSGS RPLHIPANANTPKAPPAPPAPARVSTLLDWVPGVRAIAVKCDLCSFDEQGPACVRMCP TKALHLVENTDIARASKRKRELTFNTDFGDLTLFQQAQSGDA" misc_feature complement(2998485..2998976) /gene="hycB" /locus_tag="STM2852" /note="HycB, HydN and similar proteins; Region: HycB_like; cd10554" /db_xref="CDD:319876" regulatory complement(2998385..2998390) /regulatory_class="ribosome_binding_site" /gene="hycB" /locus_tag="STM2852" /note="putative RBS for hycC; RegulonDB:STMS1H002916" regulatory complement(2998992..2998997) /regulatory_class="ribosome_binding_site" /gene="hycB" /locus_tag="STM2852" /note="putative RBS for hycB; RegulonDB:STMS1H002917" gene complement(2999131..2999606) /gene="hycA" /locus_tag="STM2853" /db_xref="GeneID:1254376" CDS complement(2999131..2999592) /gene="hycA" /locus_tag="STM2853" /note="similar to E. coli transcriptional repression of hyc and hyp operons (AAC75767.1); Blastp hit to AAC75767.1 (153 aa), 88% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="transcriptional repressor of hyc and hyp operons" /protein_id="NP_461774.1" /db_xref="GeneID:1254376" /translation="MTIWEISEKADYIAQRHRRLQDQWHIYCNSLVQGITLSKARLHH AMSCAPERDLCFVLFEHFRIYVALADGFNSHTIEYYVETKDGEDKQLIAQAQLDIDGK VDERVNNRDREQVLEHYLEKIASVYDSLYTAVETNSPVNLRQLVKGHSPAV" misc_feature complement(2999137..2999592) /gene="hycA" /locus_tag="STM2853" /note="formate hydrogenlyase regulator HycA; Region: PRK10198" /db_xref="CDD:182298" regulatory complement(2999601..2999606) /regulatory_class="ribosome_binding_site" /gene="hycA" /locus_tag="STM2853" /note="putative RBS for hycA; RegulonDB:STMS1H002918" protein_bind 2999730..2999752 /note="putative binding site for FNR, RegulonDB: STMS1H000157" /bound_moiety="FNR" gene 2999794..3000158 /gene="hypA" /locus_tag="STM2854" /db_xref="GeneID:1254377" regulatory 2999794..2999799 /regulatory_class="ribosome_binding_site" /gene="hypA" /locus_tag="STM2854" /note="putative RBS for hypA; RegulonDB:STMS1H002919" CDS 2999802..3000158 /gene="hypA" /locus_tag="STM2854" /note="functions as nickel donor for HycE of hydrogenlyase 3; similar to E. coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75768.1); Blastp hit to AAC75768.1 (116 aa), 86% identity in aa 1 - 115" /codon_start=1 /transl_table=11 /product="guanine-nucleotide binding protein in formate-hydrogenlyase system" /protein_id="NP_461775.1" /db_xref="GeneID:1254377" /translation="MHEITLCQRALELIEQQASAYGAKRVTAVWIKIGAFSCVETSAL SFCFDLVCRGTIAEGCKLHLEEQEAECWCEHCQQYVTLLTHRVRRCPQCHSDTLRIVA DDGLQIRRIEIDETED" misc_feature 2999802..3000143 /gene="hypA" /locus_tag="STM2854" /note="hydrogenase/urease nickel incorporation protein HypA; Region: hypA; PRK03681" /db_xref="CDD:179630" protein_bind 2999936..2999960 /gene="hypA" /locus_tag="STM2854" /note="putative binding site for FNR, RegulonDB: STMS1H000175" /bound_moiety="FNR" gene 3000215..3001099 /gene="hypB" /locus_tag="STM2855" /db_xref="GeneID:1254378" regulatory 3000215..3000220 /regulatory_class="ribosome_binding_site" /gene="hypB" /locus_tag="STM2855" /note="putative RBS for hypB; RegulonDB:STMS1H002920" CDS 3000227..3001099 /gene="hypB" /locus_tag="STM2855" /note="assembly of metallocenter; similar to E. coli guanine-nucleotide binding protein, functions as nickel donor for large subunit of hydrogenase 3 (AAC75769.1); Blastp hit to AAC75769.1 (290 aa), 94% identity in aa 1 - 290" /codon_start=1 /transl_table=11 /product="hydrogenase-3 accessory protein" /protein_id="NP_461776.1" /db_xref="GeneID:1254378" /translation="MCTTCGCAEGNLYIEGDEHNPHSAFRSAPFAPAARPALNITGIK TPDFAPSQTAEGDLHYGHGEAGTHAPGMSQRRMLEVEIDVLDKNNRLAERNRARFAAR QQLVLNLVSSPGSGKTTLLTETLMKLKDRVPCAVIEGDQQTVNDAARIRATGTPAIQV NTGKGCHLDAQMIADAAPRLPLDDHGILFIENVGNLVCPASFDLGEKHKVAVLSVTEG EDKPLKYPHMFAAASLMLLNKVDLLPYLNFDVEKCIASAREVNPEIEIILISATSGEG MDQWLAWLEAQRCA" misc_feature 3000227..3001096 /gene="hypB" /locus_tag="STM2855" /note="hydrogenase nickel incorporation protein HypB; Provisional; Region: PRK10463" /db_xref="CDD:182479" misc_feature order(3000560..3000583,3000662..3000664,3000671..3000673, 3000797..3000799,3000806..3000808,3000938..3000943, 3000947..3000952,3001034..3001042) /gene="hypB" /locus_tag="STM2855" /note="active site" /db_xref="CDD:349775" misc_feature order(3000560..3000568,3000644..3000652,3000659..3000664, 3000722..3000724,3000809..3000811,3000815..3000820, 3000827..3000829,3000872..3000877,3000893..3000898, 3000941..3000943,3000950..3000952,3000959..3000964, 3001040..3001042) /gene="hypB" /locus_tag="STM2855" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349775" misc_feature order(3000722..3000727,3000818..3000820) /gene="hypB" /locus_tag="STM2855" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:349775" gene 3001076..3001362 /gene="hypC" /locus_tag="STM2856" /db_xref="GeneID:1254379" regulatory 3001076..3001081 /regulatory_class="ribosome_binding_site" /gene="hypC" /locus_tag="STM2856" /note="putative RBS for hypC; RegulonDB:STMS1H002921" CDS 3001090..3001362 /gene="hypC" /locus_tag="STM2856" /note="similar to E. coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75770.1); Blastp hit to AAC75770.1 (90 aa), 96% identity in aa 1 - 90" /codon_start=1 /transl_table=11 /product="putative hydrogenase expression/formation protein" /protein_id="NP_461777.1" /db_xref="GeneID:1254379" /translation="MCIGVPGQIRAIDGNQAKVDVCGIQRDVDLTLVGSCDENGQPRL GQWVLVHVGFAMSVINEAEARDTLDALQNMFDVEPDVGALLYGEER" misc_feature 3001090..3001359 /gene="hypC" /locus_tag="STM2856" /note="HypC/HybG/HupF family hydrogenase formation chaperone; Region: PRK10409" /db_xref="CDD:182435" gene 3001351..3002483 /gene="hypD" /locus_tag="STM2857" /db_xref="GeneID:1254380" regulatory 3001351..3001356 /regulatory_class="ribosome_binding_site" /gene="hypC" /locus_tag="STM2856" /note="putative RBS for hypD; RegulonDB:STMS1H002922" CDS 3001362..3002483 /gene="hypD" /locus_tag="STM2857" /note="similar to E. coli pleiotrophic effects on 3 hydrogenase isozymes (AAC75771.1); Blastp hit to AAC75771.1 (373 aa), 94% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="putative hydrogenase expression/formation protein" /protein_id="NP_461778.2" /db_xref="GeneID:1254380" /translation="MRFVDEYRAPEQVMQLIEHLRERAALLPYTAERPLRIMEVCGGH THAIFKFGLDQLLPENVEFIHGPGCPVCVLPMGRIDSCVEIASHPEVIFCTFGDAMRV PGKQGSLLQAKARGADVRIVYSPMDALKLAQDNPTRKVVFFGLGFETTMPTTAITLQQ AKQRDVRNFYFFCQHITLIPTLRSLLEQPDNGIDAFLAPGHVSMVIGTEAYQFIAADF HRPLVVAGFEPLDLLQGVVMLVEQKIAALSQVENQYRRVVPDAGNMLAQQAIADVFCV NGDSEWRGLGVIESSGVHLTPEYQRFDAEAHFRPAPQQVYDDPRARCGEVLTGRCKPH QCPLFGKTCNPETAFGALMVSSEGACAAWYQYRQQECEV" misc_feature 3001362..3002471 /gene="hypD" /locus_tag="STM2857" /note="Hydrogenase maturation factor HypD [Posttranslational modification, protein turnover, chaperones]; Region: HypD; COG0409" /db_xref="CDD:440178" gene 3002516..3003490 /gene="hypE" /locus_tag="STM2858" /db_xref="GeneID:1254381" regulatory 3002516..3002521 /regulatory_class="ribosome_binding_site" /gene="hypE" /locus_tag="STM2858" /note="putative RBS for hypE; RegulonDB:STMS1H002923" CDS 3002522..3003490 /gene="hypE" /locus_tag="STM2858" /note="similar to E. coli plays structural role in maturation of all 3 hydrogenases (AAC75772.1); Blastp hit to AAC75772.1 (322 aa), 91% identity in aa 1 - 322" /codon_start=1 /transl_table=11 /product="putative hydrogenase expression/formation protein" /protein_id="NP_461779.3" /db_xref="GeneID:1254381" /translation="MQQLINSLFMEAFANPWLAEQEDQARLELAQLTAEGDRLAFSTD SYVIDPLFFPGGNIGKLAICGTANDVAVSGAIPRYLSCGFILEEGLPMETLKSVVNSM AATAREADIAIVTGDTKVVQRGAADKLFINTAGMGAIPADIRWGAQTLSVGDVLLVSG TLGDHGATILNLREQLGLDGELASDCAVLTPLIQTLRHIDGVKALRDATRGGVNAVAH EFAASCGYGIELSESALPLKPAVRGVCELLGLDALNFANEGKLVIAVERQAADRALAA LRAHPLGRDAALIGEVVERKGVRLAGLYGVKRTLDLPHAEPLPRIC" misc_feature 3002522..3003487 /gene="hypE" /locus_tag="STM2858" /note="hydrogenase expression/formation protein HypE; Region: hypE; TIGR02124" /db_xref="CDD:273984" gene 3003696..3005787 /gene="fhlA" /locus_tag="STM2859" /db_xref="GeneID:1254382" regulatory 3003696..3003701 /regulatory_class="ribosome_binding_site" /gene="fhlA" /locus_tag="STM2859" /note="putative RBS for fhlA; RegulonDB:STMS1H002924" CDS 3003709..3005787 /gene="fhlA" /locus_tag="STM2859" /note="EBP family; formate hydrogenlyase transcriptional activator. (SW:FHLA_SALTY)" /codon_start=1 /transl_table=11 /product="formate hydrogen-lyase transcriptional activator for fdhF, hyc and hyp operons" /protein_id="NP_461780.1" /db_xref="GeneID:1254382" /translation="MSYTPMSDLGQQGLFDITRTLLQQPDLASLSEALSQLVKRSALA DSAGIVLWQAQSQRAQYYATRENGRPVEYEDETVLAHGPVRRILSRPDALHCNFHEFT ETWPQLAASGLYPEFGHYCLLPLAAEGRIFGGCEFIRQEDRPWSEKEYDRLHTFTQIV GVVAEQIQNRVNNNVDYDLLCRERDNFRILVAITNAVLSRLDIDELVSEVAKEIHHYF NIDAISIVLRSHRKNKLNIYSTHYLDEHHPAHEQSEVDEAGTLTERVFKSKEMLLINL NERDPLAPYERMLFDTWGNQIQTLCLLPLMSGKTMLGVLKLAQCEEKVFTTANLKLLR QIAERVAIAVDNALAYQEIHRLKERLVDENLALTEQLNNVDSEFGEIIGRSEAMYNVL KQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRSGRRMVKMNCAAMPAGLLESDL FGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSN KLIQTDVRLIAATNRDLKKMVADREFRNDLYYRLNVFPIQLPPLRERPEDIPLLVKAF TFKIARRMGRNIDSIPAETLRTLSSMEWPGNVRELENVVERAVLLTRGNVLQLSLPDI TAVTPDTSPVATESDKEGEDEYQLIIRVLKETNGVVAGPKGAAQRLGLKRTTLLSRMK RLGIDKDALA" misc_feature 3003718..3005775 /gene="fhlA" /locus_tag="STM2859" /note="formate hydrogenlyase transcriptional activator FlhA; Region: PRK15429" /db_xref="CDD:237965" gene complement(3005849..3006207) /gene="ygbA" /locus_tag="STM2860" /db_xref="GeneID:1254383" CDS complement(3005849..3006193) /gene="ygbA" /locus_tag="STM2860" /note="similar to E. coli orf, hypothetical protein (AAC75774.1); Blastp hit to AAC75774.1 (117 aa), 86% identity in aa 1 - 114" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461781.1" /db_xref="GeneID:1254383" /translation="MPGKRIAREKLTIKKMIALYESQCPQASTVQGHYDALFAYAQKR LDKCVFGEEKPACKQCPVHCYQPAKREEMKQIMRWAGPRMLWRHPVLTVRHLIDDKRP VPELPEKYQRKK" misc_feature complement(3005870..3006184) /gene="ygbA" /locus_tag="STM2860" /note="Nitrous oxide-stimulated promoter; Region: YgbA_NO; pfam11756" /db_xref="CDD:432053" regulatory complement(3006202..3006207) /regulatory_class="ribosome_binding_site" /gene="ygbA" /locus_tag="STM2860" /note="putative RBS for ygbA; RegulonDB:STMS1H002925" gene 3006369..3007292 /gene="sitA" /locus_tag="STM2861" /db_xref="GeneID:1254384" regulatory 3006369..3006374 /regulatory_class="ribosome_binding_site" /gene="sitA" /locus_tag="STM2861" /note="putative RBS for sitA; RegulonDB:STMS1H002926" CDS 3006375..3007292 /gene="sitA" /locus_tag="STM2861" /note="SitA (gi|5231094)" /codon_start=1 /transl_table=11 /product="fur regulated Salmonella iron transporter" /protein_id="NP_461782.1" /db_xref="GeneID:1254384" /translation="MTNLHRLKTLLIAGIVAILALSPAYAKEKFKVITTFTVIADMAK NVAGDAAEVSSITKPGAEIHEYQPTPGDIKRAQGAQLILANGLNLERWFARFYQHLSG VPEVVVSTGVKPMGITEGPYNGKPNPHAWMSAENALIYVDNIRDALVKYDPDNAQIYK QNAERYKAKIRQMADPLRAELEKIPADQRWLVTSEGAFSYLARDNDMKELYLWPINAD QQGTPKQVRKVIDTIKKHHIPAIFSESTVSDKPARQVARESGAHYGGVLYVDSLSAAD GPVPTYLDLLRVTTETIVNGINDGLRSQQ" misc_feature 3006423..3007268 /gene="sitA" /locus_tag="STM2861" /note="Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that...; Region: PsaA; cd01137" /db_xref="CDD:238557" misc_feature order(3006564..3006566,3006759..3006761,3006957..3006959, 3007182..3007184) /gene="sitA" /locus_tag="STM2861" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238557" gene 3007281..3008110 /gene="sitB" /locus_tag="STM2862" /db_xref="GeneID:1254385" regulatory 3007281..3007286 /regulatory_class="ribosome_binding_site" /gene="sitB" /locus_tag="STM2862" /note="putative RBS for sitB; RegulonDB:STMS1H002927" CDS 3007289..3008110 /gene="sitB" /locus_tag="STM2862" /note="SitB (gi|5231095)" /codon_start=1 /transl_table=11 /product="fur regulated Salmonella iron transporter" /protein_id="NP_461783.1" /db_xref="GeneID:1254385" /translation="MSQSAITVDQVTVTYRNGHTALRDATFQVPGGSIAALVGVNGSG KSTLFKALMGFVHLAQGDITILQQSVNKALKKNLIAYVPQSEEVDWSFPVLVEDVVMM GRYGHMGWLRRPTAHDHACVDAALARVDMQEYRHRQIGELSGGQKKRVFLARAIAQDG QVILLDEPFTGVDVKTEARIIDLLRELRDEGRTMLVSTHNLGSVTEFCDYTVMIKGTV LASGPTETTFTAANLEQAFSGVLRHIALSGGEEHIITDDERPFISRRVASGGKSS" misc_feature 3007289..3008101 /gene="sitB" /locus_tag="STM2862" /note="manganese/iron ABC transporter ATP-binding protein; Region: PRK15056" /db_xref="CDD:185016" gene 3008100..3008967 /gene="sitC" /locus_tag="STM2863" /db_xref="GeneID:1254386" regulatory 3008100..3008105 /regulatory_class="ribosome_binding_site" /gene="sitB" /locus_tag="STM2862" /note="putative RBS for sitC; RegulonDB:STMS1H002928" CDS 3008107..3008967 /gene="sitC" /locus_tag="STM2863" /note="SitC (gi|5231096)" /codon_start=1 /transl_table=11 /product="fur regulated Salmonella iron transporter" /protein_id="NP_461784.1" /db_xref="GeneID:1254386" /translation="MNWLVEPFGYQYMLNAMWVSAMVGGLCAFLSCYLMLKGWSLIGD ALSHSIVPGVAGAWMLGLPFSLGAFLSGGLAAGSMLFLNQRSRLKEDAIIGLIFSSFF GVGLFMVSLNPMSVNIQTIILGNVLAIAPADIAQLAIIGAVSLTILLLKWKDLMVVFF DETHARSIGLNPGRLKLLFFTLLSVSTVAALQTVGAFLVICLVVTPGATAWLLTDRFP RLLMIAVVIGSLTSFLGAWLSYWLDGATGGIIVVMQTLLFITAFIFAPKHGLLANRRR ARLQKEPTCS" misc_feature 3008134..3008910 /gene="sitC" /locus_tag="STM2863" /note="ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108" /db_xref="CDD:440725" gene 3008951..3009806 /gene="sitD" /locus_tag="STM2864" /db_xref="GeneID:1254387" regulatory 3008951..3008956 /regulatory_class="ribosome_binding_site" /gene="sitD" /locus_tag="STM2864" /note="putative RBS for sitD; RegulonDB:STMS1H002929" CDS 3008958..3009806 /gene="sitD" /locus_tag="STM2864" /note="SitD (gi|5231097)" /codon_start=1 /transl_table=11 /product="fur regulated Salmonella iron transporter" /protein_id="NP_461785.1" /db_xref="GeneID:1254387" /translation="MFLTTLLEPFQFDFMVNALMVSVIVAIPCALLSVFLVLKGWALM GDAMSHAVFPGVVLAYIVGIPLAIGAFIAGLFCAIATGYLDDNSRIKRDTVMGIVFSG MFGAGLVLYVSIQSEVHLDHILFGDMLGVSLGDIVQTSVIALGIALIIGLKWKDLLLH AFDPHQAKASGLNTTLLHYGLLCMIALTIVATLKSVGIILSISLLIAPGAIAILLTRR FARALGLAVSLSVITAFAGVYLSFYLDSAPAPTIVVLFAIVFIAAFIYATWRDRRNEI VPEAQG" misc_feature 3008991..3009767 /gene="sitD" /locus_tag="STM2864" /note="ABC-type Mn2+/Zn2+ transport system, permease component [Inorganic ion transport and metabolism]; Region: ZnuB; COG1108" /db_xref="CDD:440725" gene complement(3009905..3010816) /gene="avrA" /locus_tag="STM2865" /db_xref="GeneID:1254388" CDS complement(3009905..3010813) /gene="avrA" /locus_tag="STM2865" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461786.1" /db_xref="GeneID:1254388" /translation="MIFSVQELSCGGKSMLSPTTRNMGASLSPQPDVSGELNTEALTC IVERLESEIIDGSWIHISYEETDLEMMPFLVAQANKKYPELNLKFVMSVHELVSSIKE TRMEGVESARFLVNMGSSGIHISVVDFRVMDGKTSVILFEPAACSAFGPALLALRTKA ALEREQLPDCYFAMVELDIQRSSSECGIFSLALAKKLQLEFMNLVKIHEDNICERLCG EEPFLPSDKADRYLPVSFYKHTQGAQRLNEYVEANPAAGSSIVNKKNETLYERFDNNA VMLNDKKLSISAHKKRIAEYKSLLKP" misc_feature complement(3009911..3010771) /gene="avrA" /locus_tag="STM2865" /note="YopJ family type III secretion system effector serine/threonine acetyltransferase; Region: PRK15371" /db_xref="CDD:185269" regulatory complement(3010811..3010816) /regulatory_class="ribosome_binding_site" /gene="avrA" /locus_tag="STM2865" /note="putative RBS for avrA; RegulonDB:STMS1H002930" gene complement(3010974..3011735) /gene="sprB" /locus_tag="STM2866" /db_xref="GeneID:1254389" CDS complement(3010974..3011729) /gene="sprB" /locus_tag="STM2866" /note="transcriptional regulator SprB (gi|5007028)" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_461787.1" /db_xref="GeneID:1254389" /translation="MRNVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLS DMPDAGLILALNPHEHVYLFHALLTRLQNRKVLVVADRLYYIDRCVLQYFGVMDYVLK DELSCAIRSEREKLRLPEAWLRFCHRPQKKTVAATYAFNAGETPEEVLFNINQYAWWN LPPGVTQAKYALLILLSSGHPAIELAKKFGLGTKTVSIYRKKVMYRLGMDSSPLSLFR GLKLDAHLQRTAFAHNPAVPDDNCALPIAVGMN" misc_feature complement(3010977..3011729) /gene="sprB" /locus_tag="STM2866" /note="transcriptional activator SprB; Provisional; Region: PRK15320" /db_xref="CDD:185220" regulatory complement(3011730..3011735) /regulatory_class="ribosome_binding_site" /gene="sprB" /locus_tag="STM2866" /note="putative RBS for sprB; RegulonDB:STMS1H002931" gene complement(3012114..3013008) /gene="hilC" /locus_tag="STM2867" /db_xref="GeneID:1254390" CDS complement(3012114..3013001) /gene="hilC" /locus_tag="STM2867" /note="HilC (gi|4455106)" /codon_start=1 /transl_table=11 /product="araC family bacterial regulatory helix-turn-helix protein" /protein_id="NP_461788.1" /db_xref="GeneID:1254390" /translation="MVLPSMNKSVEAISNNHLQQPNKFPLINGLADVRDYYVANCLLF KLNKGSLRIENEFGEFIERSAPCLFLLEKDQTITLSMSEIEGHIDFSSLEVSYDLMQK FYKVFYSTRNYNDRELSLKTKPKYFFHADLLPGMSDTFDSILHGVACPRVCSNVSIDD HDYSYFSLMYLISAFVRKPGGFDFLERAIKITTKEKVYNIIISDLTRKWSQAEVAGKL FMSVSSLKRKLAAEEVSFSKIYLDARMNQAIKLLRMGAGNISQVATMCGYDTPSYFIA IFKRHFKITPLSFMRTMNH" misc_feature complement(3012117..3013001) /gene="hilC" /locus_tag="STM2867" /note="transcriptional regulator SirC; Provisional; Region: PRK15044" /db_xref="CDD:185004" regulatory complement(3013003..3013008) /regulatory_class="ribosome_binding_site" /gene="hilC" /locus_tag="STM2867" /note="putative RBS for hilC; RegulonDB:STMS1H002932" gene complement(3013346..3013804) /locus_tag="STM2868" /db_xref="GeneID:1254391" CDS complement(3013346..3013798) /locus_tag="STM2868" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461789.1" /db_xref="GeneID:1254391" /translation="MIPGTIPTSYLVPTADTEATGVVSLSARAAMLNNMDSAPLSNGG DVDLYDAFYQRLLALPESASSETLKDSIYQEMNAFKDPNSGDSAFVSFEQQTAMLQNM LAKVEPGTHLYEALNGVLVGSMNAQSQMTSWMQEIILSGGENKEAIDW" misc_feature complement(3013349..3013708) /locus_tag="STM2868" /note="type III secretion system effector protein OrgC; Region: PRK15321" /db_xref="CDD:185221" gene complement(3013795..3014479) /gene="orgA" /locus_tag="STM2869" /db_xref="GeneID:1254392" CDS complement(3013795..3014475) /gene="orgA" /locus_tag="STM2869" /note="oxygen-regulated invasion protein ORGA. (SW:ORGA_SALTY)" /codon_start=1 /transl_table=11 /product="putative flagellar biosynthesis/type III secretory pathway protein" /protein_id="NP_461790.1" /db_xref="GeneID:1254392" /translation="MLKNIPIPSPLSPVEGILIKRKTLERYFSIERLEQQAHQRAKRI LREAEEEAKTLRMYAYQEGYEQGMIDALQQVAAYLTDNQTMAWKWMEKIQIYARELFS AAVDHPETLLTVLDEWLRDFDKPEGQLFLTLPVNAKKDHQKLMVLLMENWPGTFNLKY HQEQRFIMSCGDQIAEFSPEQFVETAVGVIKHHLDELPQDCRTISDNAINALIDEWKT KTQAEVIR" misc_feature complement(3013798..3014427) /gene="orgA" /locus_tag="STM2869" /note="oxygen-regulated invasion protein OrgB; Region: PRK15322" /db_xref="CDD:185222" regulatory complement(3013799..3013804) /regulatory_class="ribosome_binding_site" /locus_tag="STM2868" /note="putative RBS for STM2868; RegulonDB:STMS1H002933" gene complement(3014432..3015046) /locus_tag="STM2870" /db_xref="GeneID:1254393" CDS complement(3014432..3015031) /locus_tag="STM2870" /note="oxygen-regulated invasion protein ORGA. (SW:ORGA_SALTY)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461791.1" /db_xref="GeneID:1254393" /translation="MIRRNRQMNRQPLPIIWQRIIFDPLSYIHPQRLQIAPEMIVRPA ARAAANELILAAWRLKNGEKECIQNSLTQLWLRQWRRLPQVAYLLGCHKLRADLARQG ALLGLPDWAQAFLAMHQGTSLSVCNKAPNHRFLLSVGYAQLNALNEFLPESLAQRFPL LFPPFIEEALKQDAVEMSILLLALQYAQKYPNTVPAFAC" misc_feature complement(3014435..3014935) /locus_tag="STM2870" /note="oxygen-regulated invasion protein OrgA; Region: PRK15323" /db_xref="CDD:185223" regulatory complement(3014474..3014479) /regulatory_class="ribosome_binding_site" /locus_tag="STM2870" /note="putative RBS for orgA; RegulonDB:STMS1H002934" gene complement(3015003..3015761) /gene="prgK" /locus_tag="STM2871" /db_xref="GeneID:1254394" CDS complement(3015003..3015761) /gene="prgK" /locus_tag="STM2871" /note="lipoprotein; may link inner and outer membranes; PRGK protein precursor. (SW:PRGK_SALTY)" /codon_start=1 /transl_table=11 /product="cell invasion protein" /protein_id="NP_461792.1" /db_xref="GeneID:1254394" /translation="MIRRYLYTFLLVMTLAGCKDKDLLKGLDQEQANEVIAVLQMHNI EANKIDSGKLGYSITVAEPDFTAAVYWIKTYQLPPRPRVEIAQMFPADSLVSSPRAEK ARLYSAIEQRLEQSLQTMEGVLSARVHISYDIDAGENGRPPKPVHLSALAVYERGSPL AHQISDIKRFLKNSFADVDYDNISVVLSERSDAQLQAPGTPVKRNSFATSWIVLIILL SVMSAGFGVWYYKNHYARNKKGITADDKAKSSNE" misc_feature complement(3015006..3015761) /gene="prgK" /locus_tag="STM2871" /note="EscJ/YscJ/HrcJ family type III secretion inner membrane ring protein; Region: PRK15324" /db_xref="CDD:185224" regulatory complement(3015041..3015046) /regulatory_class="ribosome_binding_site" /locus_tag="STM2870" /note="putative RBS for STM2870; RegulonDB:STMS1H002935" gene complement(3015758..3016069) /gene="prgJ" /locus_tag="STM2872" /db_xref="GeneID:1254395" CDS complement(3015758..3016063) /gene="prgJ" /locus_tag="STM2872" /note="PRGJ protein. (SW:PRGJ_SALTY)" /codon_start=1 /transl_table=11 /product="cytoplasmic cell invasion protein" /protein_id="NP_461793.1" /db_xref="GeneID:1254395" /translation="MSIATIVPENAVIGQAVNIRSMETDIVSLDDRLLQAFSGSAIAT AVDKQTITNRIEDPNLVTDPKELAISQEMISDYNLYVSMVSTLTRKGVGAVETLLRS" misc_feature complement(3015761..3016000) /gene="prgJ" /locus_tag="STM2872" /note="type III secretion system inner rod protein PrgJ; Region: PRK15325" /db_xref="CDD:185225" regulatory complement(3016064..3016069) /regulatory_class="ribosome_binding_site" /gene="prgJ" /locus_tag="STM2872" /note="putative RBS for prgJ; RegulonDB:STMS1H002936" gene complement(3016082..3016331) /gene="prgI" /locus_tag="STM2873" /db_xref="GeneID:1254396" CDS complement(3016082..3016324) /gene="prgI" /locus_tag="STM2873" /note="PRGI protein. (SW:PRGI_SALTY)" /codon_start=1 /transl_table=11 /product="cytoplasmic cell invasion protein" /protein_id="NP_461794.1" /db_xref="GeneID:1254396" /translation="MATPWSGYLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALL AAYQSKLSEYNLYRNAQSNTVKVFKDIDAAIIQNFR" misc_feature complement(3016085..3016324) /gene="prgI" /locus_tag="STM2873" /note="type III secretion system needle complex protein; Region: PRK15326" /db_xref="CDD:185226" regulatory complement(3016326..3016331) /regulatory_class="ribosome_binding_site" /gene="prgI" /locus_tag="STM2873" /note="putative RBS for prgI; RegulonDB:STMS1H002937" gene complement(3016349..3017527) /gene="prgH" /locus_tag="STM2874" /db_xref="GeneID:1254397" CDS complement(3016349..3017527) /gene="prgH" /locus_tag="STM2874" /note="PRGH protein. (SW:PRGH_SALTY)" /codon_start=1 /transl_table=11 /product="cell invasion protein" /protein_id="NP_461795.1" /db_xref="GeneID:1254397" /translation="METSKEKTITSPGPYIVRLLNSSLNGCEFPLLTGRTLFVVGQSD ALTASGQLPDIPADSFFIPLDHGGVNFEIQVDTDATEIILHELKEGNSESRSVQLNTP IQVGELLILIRPESEPWVPEQPEKLETSAKKNEPRFKNGIVAALAGFFILGIGTVGTL WILNSPQRQAAELDSLLGQEKERFQVLPGRDKMLYVAAQNERDTLWARQVLARGDYDK NARVINENEENKRISIWLDTYYPQLAYYRIHFDEPRKPVFWLSRQRNTMSKKELEVLS QKLRALMPYADSVNITLMDDVTAAGQAEAGLKQQALPYSRRNHKGGVTFVIQGALDDV EILRARQFVDSYYRTWGGRYVQFAIELKDDWLKGRSFQYGAEGYIKMSPGHWYFPSPL " misc_feature complement(3016355..3017527) /gene="prgH" /locus_tag="STM2874" /note="PrgH/EprH family type III secretion inner membrane ring protein; Region: PRK15327" /db_xref="CDD:237944" gene 3017838..3018772 /gene="hilD" /locus_tag="STM2875" /db_xref="GeneID:1254398" regulatory 3017838..3017843 /regulatory_class="ribosome_binding_site" /gene="hilD" /locus_tag="STM2875" /note="putative RBS for hilD; RegulonDB:STMS1H002938" CDS 3017843..3018772 /gene="hilD" /locus_tag="STM2875" /note="HilD (gi|4455108)" /codon_start=1 /transl_table=11 /product="regulatory helix-turn-helix proteins, araC family" /protein_id="NP_461796.1" /db_xref="GeneID:1254398" /translation="MENVTFVSNSHQRPAADNLQKLKSLLTNTRQQIKSQTQQVTIKN LYVSSFTLVCFRSGKLTISNNHDTIYCDEPGMLVLKKEQVVNVTLEEVNGHMDFDILE IPTQRLGALYALIPNEQQTKMAVPTEKAQKIFYTPDFPARREVFEHLKTAFSCTKDTS KGCSNCNNKSCIENEELIPYFLLFLLTAFLRLPESYEIILSSAQITLKERVYNIISSS PSRQWKLTDVADHIFMSTSTLKRKLAEEGTSFSDIYLSARMNQAAKLLRIGNHNVNAV ALKCGYDSTSYFIQCFKKYFKTTPSTFIKMANH" misc_feature 3017843..3018769 /gene="hilD" /locus_tag="STM2875" /note="transcriptional regulator HilD; Provisional; Region: PRK15185" /db_xref="CDD:185107" gene 3019846..3021524 /gene="hilA" /locus_tag="STM2876" /db_xref="GeneID:1254399" regulatory 3019846..3019851 /regulatory_class="ribosome_binding_site" /gene="hilA" /locus_tag="STM2876" /note="putative RBS for hilA; RegulonDB:STMS1H002939" CDS 3019863..3021524 /gene="hilA" /locus_tag="STM2876" /note="invasion protein IAGA (protein HILA). (SW:IAGA_SALTY)" /codon_start=1 /transl_table=11 /product="invasion genes transcription activator" /protein_id="NP_461797.1" /db_xref="GeneID:1254399" /translation="MPHFNPVPVSNKKFVFDDFILNMDGSLLRSEKKVNIPPKEYAVL VILLEAAGEIVSKNTLLDQVWGDAEVNEESLTRCIYALRRILSEDKEHRYIETLYGQG YRFNRPVVVVSPPAPQPTTHTLAILPFQMQDQVQSESLHYSIVKGLSQYAPFGLSVLP VTITKNCRSVKDILELMDQLRPDYYISGQMIPDGNDNIVQIEIVRVKGYHLLHQESIK LIEHQPASLLQNKIANLLLRCIPGLRWDTKQISELNSIDSTMVYLRGKHELNQYTPYS LQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEAL QTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMF LSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDN NPGLLPLVLVAHGEAIAEKMWNKFKNEDNIWFKRWKQDPRLIKLR" misc_feature 3019863..3021521 /gene="hilA" /locus_tag="STM2876" /note="HilA/EilA family virulence transcriptional regulator; Region: PRK12370" /db_xref="CDD:237080" misc_feature 3020766..3020858 /gene="hilA" /locus_tag="STM2876" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(3020769..3020771,3020778..3020783,3020790..3020792, 3020799..3020801,3020805..3020807,3020877..3020879, 3020886..3020891,3020898..3020903,3020907..3020912, 3020979..3020981,3020988..3020993,3021000..3021005, 3021012..3021014) /gene="hilA" /locus_tag="STM2876" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 3020871..3020963 /gene="hilA" /locus_tag="STM2876" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 3020976..3021062 /gene="hilA" /locus_tag="STM2876" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene 3021534..3022024 /gene="iagB" /locus_tag="STM2877" /db_xref="GeneID:1254400" regulatory 3021534..3021539 /regulatory_class="ribosome_binding_site" /gene="iagB" /locus_tag="STM2877" /note="putative RBS for iagB; RegulonDB:STMS1H002940" CDS 3021542..3022024 /gene="iagB" /locus_tag="STM2877" /note="invasion protein IAGB precursor. (SW:IAGB_SALTY)" /codon_start=1 /transl_table=11 /product="cell invasion protein" /protein_id="NP_461798.1" /db_xref="GeneID:1254400" /translation="MHYFFIIVIWLLSINTAWADCWLQAEKMFNIESELLYAIAQQES AMKPGAIGHNRDGSTDLGLMQINSFHMKRLKKMGISEKQLLQDPCISVIVGASILSDM MKIYGYSWEAVGAYNAGTSPKRSDIRKRYAKKIWENYRKLKGMSAEEKNKRLSIAANK " misc_feature 3021542..3022021 /gene="iagB" /locus_tag="STM2877" /note="type III secretion system invasion protein IagB; Region: PRK15328" /db_xref="CDD:185228" misc_feature order(3021668..3021670,3021734..3021742,3021749..3021751, 3021833..3021835,3021887..3021892) /gene="iagB" /locus_tag="STM2877" /note="putative sugar binding site [chemical binding]; other site" /db_xref="CDD:381603" gene complement(3022078..3023717) /gene="sptP" /locus_tag="STM2878" /db_xref="GeneID:1254401" CDS complement(3022078..3023709) /gene="sptP" /locus_tag="STM2878" /note="protein tyrosine phosphatase SptP (gi|1519054)" /codon_start=1 /transl_table=11 /product="protein tyrosine phosphate" /protein_id="NP_461799.1" /db_xref="GeneID:1254401" /translation="MLKYEERKLNNLTLSSFSKVGVSNDARLYIAKENTDKAYVAPEK FSSKVLTWLGKMPLFKNTEVVQKHTENIRVQDQKILQTFLHALTEKYGETAVNDALLM SRINMNKPLTQRLAVQITECVKAADEGFINLIKSKDNVGVRNAALVIKGGDTKVAEKN NDVGAESKQPLLDIALKGLKRTLPQLEQMDGNSLRENFQEMASGNGPLRSLMTNLQNL NKIPEAKQLNDYVTTLTNIQVGVARFSQWGTCGGEVERWVDKASTHELTQAVKKIHVI AKELKNVTAELEKIEAGAPMPQTMSGPTLGLARFAVSSIPINQQTQVKLSDGMPVPVN TLTFDGKPVALAGSYPKNTPDALEAHMKMLLEKECSCLVVLTSEDQMQAKQLPPYFRG SYTFGEVHTNSQKVSSASQGEAIDQYNMQLSCGEKRYTIPVLHVKNWPDHQPLPSTDQ LEYLADRVKNSNQNGAPGRSSSDKHLPMIHCLGGVGRTGTMAAALVLKDNPHSNLEQV RADFRDSRNNRMLEDASQFVQLKAMQAQLLMTTAS" misc_feature complement(3022081..3023685) /gene="sptP" /locus_tag="STM2878" /note="type III secretion system effector GTPase-activating protein SptP; Region: PRK15375" /db_xref="CDD:185273" gene complement(3023696..3024095) /gene="sicP" /locus_tag="STM2879" /db_xref="GeneID:1254402" CDS complement(3023696..3024088) /gene="sicP" /locus_tag="STM2879" /note="SicP (gi|3283218)" /codon_start=1 /transl_table=11 /product="chaparone related to virulence" /protein_id="NP_461800.1" /db_xref="GeneID:1254402" /translation="MQAHQDIIANIGEKLGLPLTFDDNNQCLLLLDSDIFTSIEAKDD IWLLNGMIIPLSPVCGDSIWRQIMVINGELAANNEGTLAYIDAAETLLLIHAITDLTN TYHIISQLESFVNQQEALKNILQEYAKV" misc_feature complement(3023699..3024088) /gene="sicP" /locus_tag="STM2879" /note="chaperone SicP; Region: PRK15329" /db_xref="CDD:237945" regulatory complement(3023712..3023717) /regulatory_class="ribosome_binding_site" /gene="sicP" /locus_tag="STM2879" /note="putative RBS for sptP; RegulonDB:STMS1H002941" regulatory complement(3024090..3024095) /regulatory_class="ribosome_binding_site" /gene="sicP" /locus_tag="STM2879" /note="putative RBS for sicP; RegulonDB:STMS1H002942" gene complement(3024115..3024375) /locus_tag="STM2880" /db_xref="GeneID:1254403" CDS complement(3024115..3024375) /locus_tag="STM2880" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_449260.1" /db_xref="GeneID:1254403" /translation="MKIITHVVPGSGMAAIYDDIADSSRFVIKGKLRHVENDPKELLI CVPMRSEWLFYWIKGEKYCARRWARKSIKTLCNQIKFEEAIL" gene complement(3024419..3024672) /gene="iacP" /locus_tag="STM2881" /db_xref="GeneID:1254404" CDS complement(3024419..3024667) /gene="iacP" /locus_tag="STM2881" /note="acyl carrier protein (gi|1172129)" /codon_start=1 /transl_table=11 /product="putative acyl carrier protein" /protein_id="NP_461802.1" /db_xref="GeneID:1254404" /translation="MNMDIEARVKKVITSCIAVDVDSINGQTHLVEDLYADSLDLIDI VFGLSEEFDISCNENDLPDMMTFADICRVVKKSLESRV" misc_feature complement(3024422..3024667) /gene="iacP" /locus_tag="STM2881" /note="acyl carrier protein; Region: PRK08172" /db_xref="CDD:181266" regulatory complement(3024667..3024672) /regulatory_class="ribosome_binding_site" /gene="iacP" /locus_tag="STM2881" /note="putative RBS for iacP; RegulonDB:STMS1H002943" gene complement(3024686..3026750) /gene="sipA" /locus_tag="STM2882" /db_xref="GeneID:1254405" CDS complement(3024686..3026743) /gene="sipA" /locus_tag="STM2882" /note="SipA (gi|1172128)" /codon_start=1 /transl_table=11 /product="cell invasion protein" /protein_id="NP_461803.1" /db_xref="GeneID:1254405" /translation="MVTSVRTQPPVIMPGMQTEIKTQATNLAANLSAVRESATATLSG EIKGPQLEDFPALIKQASLDALFKCGKDAEALKEVFTNSNNVAGKKAIMEFAGLFRSA LNATSDSPEAKTLLMKVGAEYTAQIIKDGLKEKSAFGPWLPETKKAEAKLENLEKQLL DIIKNNTGGELSKLSTNLVMQEVMPYIASCIEHNFGCTLDPLTRSNLTHLVDKAAAKA VEALDMCHQKLTQEQGTSVGREARHLEMQTLIPLLLRNVFAQIPADKLPDPKIPEPAA GPVPDGGKKAEPTGINININIDSSNHSVDNSKHINNSRSHVDNSQRHIDNSNHDNSRK TIDNSRTFIDNSQRNGESHHSTNSSNVSHSHSRVDSTTHQTETAHSASTGAIDHGIAG KIDVTAHATAEAVTNASSESKDGKVVTSEKGTTGETTSFDEVDGVTSKSIIGKPVQAT VHGVDDNKQQSQTAEIVNVKPLASQLAGVENVKTDTLQSDTTVITGNKAGTTDNDNSQ TDKTGPFSGLKFKQNSFLSTVPSVTNMHSMHFDARETFLGVIRKALEPDTSTPFPVRR AFDGLRAEILPNDTIKSAALKAQCSDIDKHPELKAKMETLKEVITHHPQKEKLAEIAL QFAREAGLTRLKGETDYVLSNVLDGLIGDGSWRAGPAYESYLNKPGVDRVITTVDGLH MQR" misc_feature complement(3024689..3026698) /gene="sipA" /locus_tag="STM2882" /note="type III secretion system effector SipA; Region: PRK15376" /db_xref="CDD:185274" regulatory complement(3026745..3026750) /regulatory_class="ribosome_binding_site" /gene="sipA" /locus_tag="STM2882" /note="putative RBS for sipA; RegulonDB:STMS1H002944" gene complement(3026762..3027799) /gene="sipD" /locus_tag="STM2883" /db_xref="GeneID:1254406" CDS complement(3026762..3027793) /gene="sipD" /locus_tag="STM2883" /note="sspD protein (gi|7443300)" /codon_start=1 /transl_table=11 /product="cell invasion protein" /protein_id="NP_461804.1" /db_xref="GeneID:1254406" /translation="MLNIQNYSASPHPGIVAERPQTPSASEHVETAVVPSTTEHRGTD IISLSQAATKIHQAQQTLQSTPPISEENNDERTLARQQLTSSLNALAKSGVSLSAEQN ENLRSAFSAPTSALFSASPMAQPRTTISDAEIWDMVSQNISAIGDSYLGVYENVVAVY TDFYQAFSDILSKMGGWLLPGKDGNTVKLDVTSLKNDLNSLVNKYNQINSNTVLFPAQ SGSGVKVATEAEARQWLSELNLPNSCLKSYGSGYVVTVDLTPLQKMVQDIDGLGAPGK DSKLEMDNAKYQAWQSGFKAQEENMKTTLQTLTQKYSNANSLYDNLVKVLSSTISSSL ETAKSFLQG" misc_feature complement(3026765..3027793) /gene="sipD" /locus_tag="STM2883" /note="type III secretion system needle tip protein SipD; Region: PRK15330" /db_xref="CDD:185230" regulatory complement(3027794..3027799) /regulatory_class="ribosome_binding_site" /gene="sipD" /locus_tag="STM2883" /note="putative RBS for sipD; RegulonDB:STMS1H002945" gene complement(3027864..3029098) /gene="sipC" /locus_tag="STM2884" /db_xref="GeneID:1254407" CDS complement(3027864..3029093) /gene="sipC" /locus_tag="STM2884" /note="sspC protein (gi|7443298)" /codon_start=1 /transl_table=11 /product="cell invasion protein" /protein_id="NP_461805.1" /db_xref="GeneID:1254407" /translation="MLISNVGINPAAYLNNHSVENSSQTASQSVSAKDILNSIGISSS KVSDLGLSPTLSAPAPGVLTQTPGTITSFLKASIQNTDMNQDLNALANNVTTKANEVV QTQLREQQAEVGKFFDISGMSSSAVALLAAANTLMLTLNQADSKLSGKLSLVSFDAAK TTASSMMREGMNALSGSISQSALQLGITGVGAKLEYKGLQNERGALKHNAAKIDKLTT ESHSIKNVLNGQNSVKLGAEGVDSLKSLNMKKTGTDATKNLNDATLKSNAGTSATESL GIKDSNKQISPEHQAILSKRLESVESDIRLEQNTMDMTRIDARKMQMTGDLIMKNSVT VGGIAGASGQYAATQERSEQQISQVNNRVASTASDEARESSRKSTSLIQEMLKTMESI NQSKASALAAIAGNIRA" misc_feature complement(3027867..3029093) /gene="sipC" /locus_tag="STM2884" /note="IpaC/SipC family type III secretion system needle tip complex protein; Region: PRK15373" /db_xref="CDD:185271" regulatory complement(3029093..3029098) /regulatory_class="ribosome_binding_site" /gene="sipC" /locus_tag="STM2884" /note="putative RBS for sipC; RegulonDB:STMS1H002946" gene complement(3029121..3030909) /gene="sipB" /locus_tag="STM2885" /db_xref="GeneID:1254408" CDS complement(3029121..3030902) /gene="sipB" /locus_tag="STM2885" /note="SipB (gi|975295)" /codon_start=1 /transl_table=11 /product="cell invasion protein" /protein_id="NP_461806.1" /db_xref="GeneID:1254408" /translation="MVNDASSISRSGYTQNPRLAEAAFEGVRKNTDFLKAADKAFKDV VATKAGDLKAGTKSGESAINTVGLKPPTDAAREKLSSEGQLTLLLGKLMTLLGDVSLS QLESRLAVWQAMIESQKEMGIQVSKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAA TKKLTQAQNKLQSLDPADPGYAQAEAAVEQAGKEATEAKEALDKATDATVKAGTDAKA KAEKADNILTKFQGTANAASQNQVSQGEQDNLSNVARLTMLMAMFIEIVGKNTEESLQ NDLALFNALQEGRQAEMEKKSAEFQEETRKAEETNRIMGCIGKVLGALLTIVSVVAAV FTGGASLALAAVGLAVMVADEIVKAATGVSFIQQALNPIMEHVLKPLMELIGKAITKA LEGLGVDKKTAEMAGSIVGAIVAAIAMVAVIVVVAVVGKGAAAKLGNALSKMMGETIK KLVPNVLKQLAQNGSKLFTQGMQRITSGLGNVGSKMGLQTNALSKELVGNTLNKVALG MEVTNTAAQSAGGVAEGVFIKNASEALADFMLARFAMDQIQQWLKQSVEIFGENQKVT AELQKAMSSAVQQNADASRFILRQSRA" misc_feature complement(3029124..3030902) /gene="sipB" /locus_tag="STM2885" /note="type III secretion system needle tip complex protein SipB; Region: PRK15374" /db_xref="CDD:185272" regulatory complement(3030904..3030909) /regulatory_class="ribosome_binding_site" /gene="sipB" /locus_tag="STM2885" /note="putative RBS for sipB; RegulonDB:STMS1H002947" gene complement(3030905..3031414) /gene="sicA" /locus_tag="STM2886" /db_xref="GeneID:1254409" CDS complement(3030905..3031402) /gene="sicA" /locus_tag="STM2886" /note="secretory proteins; surface presentation of antigens protein SPAT. (SW:SPAT_SALTY)" /codon_start=1 /transl_table=11 /product="surface presentation of antigens" /protein_id="NP_461807.1" /db_xref="GeneID:1254409" /translation="MDYQNNVSEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHA YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK NDYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEALKTAETEQHS EQEKE" misc_feature complement(3030908..3031402) /gene="sicA" /locus_tag="STM2886" /note="type III secretion system translocator chaperone SicA; Region: PRK15331" /db_xref="CDD:185231" misc_feature complement(3031208..3031285) /gene="sicA" /locus_tag="STM2886" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(order(3031052..3031054,3031061..3031066, 3031073..3031078,3031085..3031087,3031154..3031159, 3031163..3031168,3031175..3031180,3031187..3031189, 3031259..3031261,3031265..3031270,3031277..3031282)) /gene="sicA" /locus_tag="STM2886" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature complement(3031103..3031195) /gene="sicA" /locus_tag="STM2886" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(3031016..3031090) /gene="sicA" /locus_tag="STM2886" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" regulatory complement(3031409..3031414) /regulatory_class="ribosome_binding_site" /gene="sicA" /locus_tag="STM2886" /note="putative RBS for sicA; RegulonDB:STMS1H002948" gene complement(3031540..3032617) /gene="spaS" /locus_tag="STM2887" /db_xref="GeneID:1254410" CDS complement(3031540..3032610) /gene="spaS" /locus_tag="STM2887" /note="secretory proteins; surface presentation of antigens protein SPAS. (SW:SPAS_SALTY)" /codon_start=1 /transl_table=11 /product="surface presentation of antigens" /protein_id="NP_461808.1" /db_xref="GeneID:1254410" /translation="MSSNKTEKPTKKRLEDSAKKGQSFKSKDLIIACLTLGGIAYLVS YGSFNEFMGIIKIIIADNFDQSMADYSLAVFGIGLKYLIPFMLLCLVCSALPALLQAG FVLATEALKPNLSALNPVEGAKKLFSMRTVKDTVKTLLYLSSFVVAAIICWKKYKVEI FSQLNGNIVGIAVIWRELLLALVLTCLACALIVLLLDAIAEYFLTMKDMKMDKEEVKR EMKEQEGNPEVKSKRREVHMEILSEQVKSDIENSRLIVANPTHITIGIYFKPELMPIP MISVYETNQRALAVRAYAEKVGVPVIVDIKLARSLFKTHRRYDLVSLEEIDEVLRLLV WLEEVENAGKDVIQPQENEVRH" misc_feature complement(3031543..3032607) /gene="spaS" /locus_tag="STM2887" /note="EscU/YscU/HrcU family type III secretion system export apparatus switch protein; Region: PRK08156" /db_xref="CDD:236168" gene complement(3032597..3033394) /gene="spaR" /locus_tag="STM2888" /db_xref="GeneID:1254411" CDS complement(3032597..3033388) /gene="spaR" /locus_tag="STM2888" /note="secretory proteins; surface presentation of antigens protein SPAR. (SW:SPAR_SALTY)" /codon_start=1 /transl_table=11 /product="surface presentation of antigens" /protein_id="NP_461809.1" /db_xref="GeneID:1254411" /translation="MFYALYFEIHHLVASAALGFARVAPIFFFLPFLNSGVLSGAPRN AIIILVALGVWPHALNEAPPFLSVAMIPLVLQEAAVGVMLGCLLSWPFWVMHALGCII DNQRGATLSSSIDPANGIDTSEMANFLNMFAAVVYLQNGGLVTMVDVLNKSYQLCDPM NECTPSLPPLLTFINQVAQNALVLASPVVLVLLLSEVFLGLLSRFAPQMNAFAISLTV KSGIAVLIMLLYFSPVLPDNVLRLSFQATGLSSWFYERGATHVLE" misc_feature complement(3032600..3033388) /gene="spaR" /locus_tag="STM2888" /note="SpaR/YscT/HrcT type III secretion system export apparatus protein; Region: PRK15332" /db_xref="CDD:185232" regulatory complement(3032612..3032617) /regulatory_class="ribosome_binding_site" /gene="spaR" /locus_tag="STM2888" /note="putative RBS for spaS; RegulonDB:STMS1H002949" regulatory complement(3033389..3033394) /regulatory_class="ribosome_binding_site" /gene="spaR" /locus_tag="STM2888" /note="putative RBS for spaR; RegulonDB:STMS1H002950" gene complement(3033392..3033656) /gene="spaQ" /locus_tag="STM2889" /db_xref="GeneID:1254412" CDS complement(3033392..3033652) /gene="spaQ" /locus_tag="STM2889" /note="secretory proteins; surface presentation of antigens protein SPAQ. (SW:SPAQ_SALTY)" /codon_start=1 /transl_table=11 /product="surface presentation of antigens" /protein_id="NP_461810.1" /db_xref="GeneID:1254412" /translation="MDDLVFAGNKALYLVLILSGWPTIVATIIGLLVGLFQTVTQLQE QTLPFGIKLLGVCLCLFLLSGWYGEVLLSYGRQVIFLALAKG" misc_feature complement(3033395..3033652) /gene="spaQ" /locus_tag="STM2889" /note="EscS/YscS/HrcS family type III secretion system export apparatus protein; Region: PRK15333" /db_xref="CDD:185233" regulatory complement(3033651..3033656) /regulatory_class="ribosome_binding_site" /gene="spaQ" /locus_tag="STM2889" /note="putative RBS for spaQ; RegulonDB:STMS1H002951" gene complement(3033678..3034357) /gene="spaP" /locus_tag="STM2890" /db_xref="GeneID:1254413" CDS complement(3033678..3034352) /gene="spaP" /locus_tag="STM2890" /note="secretory proteins; surface presentation of antigens protein SPAP. (SW:SPAP_SALTY)" /codon_start=1 /transl_table=11 /product="surface presentation of antigens" /protein_id="NP_461811.1" /db_xref="GeneID:1254413" /translation="MGNDISLIALLAFSTLLPFIIASGTCFVKFSIVFVMVRNALGLQ QIPSNMTLNGVALLLSMFVMWPIMHDAYVYFEDEDVTFNDISSLSKHVDEGLDGYRDY LIKYSDRELVQFFENAQLKRQYGEETETVKRDKDEIEKPSIFALLPAYALSEIKSAFK IGFYLYLPFVVVDLVVSSVLLALGMMMMSPVTISTPIKLVLFVALDGWTLLSKGLILQ YMDIAT" misc_feature complement(3033681..3034352) /gene="spaP" /locus_tag="STM2890" /note="EscR/YscR/HrcR family type III secretion system export apparatus protein; Region: spaP; PRK12796" /db_xref="CDD:237209" gene complement(3034342..3035261) /gene="spaO" /locus_tag="STM2891" /db_xref="GeneID:1254414" CDS complement(3034342..3035253) /gene="spaO" /locus_tag="STM2891" /note="secretory proteins; surface presentation of antigens protein SPAO. (SW:SPAO_SALTY)" /codon_start=1 /transl_table=11 /product="surface presentation of antigens" /protein_id="NP_461812.1" /db_xref="GeneID:1254414" /translation="MSLRVRQIDRREWLLAQTATECQRHGREATLEYPTRQGMWVRLS DAEKRWSAWIKPGDWLEHVSPALAGAAVSAGAEHLVVPWLAATERPFELPVPHLSCRR LCVENPVPGSALPEGKLLHIMSDRGGLWFEHLPELPAVGGGRPKMLRWPLRFVIGSSD TQRSLLGRIGIGDVLLIRTSRAEVYCYAKKLGHFNRVEGGIIVETLDIQHIEEENNTT ETAETLPGLNQLPVKLEFVLYRKNVTLAELEAMGQQQLLSLPTNAELNVEIMANGVLL GNGELVQMNDTLGVEIHEWLSESGNGE" misc_feature complement(3034345..3035253) /gene="spaO" /locus_tag="STM2891" /note="YscQ/HrcQ family type III secretion apparatus protein; Region: PRK08158" /db_xref="CDD:181259" regulatory complement(3034352..3034357) /regulatory_class="ribosome_binding_site" /gene="spaP" /locus_tag="STM2890" /note="putative RBS for spaP; RegulonDB:STMS1H002952" gene complement(3035253..3036271) /gene="invJ" /locus_tag="STM2892" /db_xref="GeneID:1254415" CDS complement(3035253..3036263) /gene="invJ" /locus_tag="STM2892" /note="secretory proteins; surface presentation of antigens protein SPAN. (SW:SPAN_SALTY)" /codon_start=1 /transl_table=11 /product="surface presentation of antigens" /protein_id="NP_461813.1" /db_xref="GeneID:1254415" /translation="MGDVSAVSSSGNILLPQQDEVGGLSEALKKAVEKHKTEYSGDKK DRDYGDAFVMHKETALPLLLAAWRHGAPAKSEHHNGNVSGLHHNGKSELRIAEKLLKV TAEKSVGLISAEAKVDKSAALLSSKNRPLESVSGKKLSADLKAVESVSEVTDNATGIS DDNIKALPGDNKAIAGEGVRKEGAPLARDVAPARMAAANTGKPEDKDHKKVKDVSQLP LQPTTIADLSQLTGGDEKMPLAAQSKPMMTIFPTADGVKGEDSSLTYRFQRWGNDYSV NIQARQAGEFSLIPSNTQVEHRLHDQWQNGNPQRWHLTRDDQQNPQQQQHRQQSGEED DA" misc_feature complement(3035256..3036263) /gene="invJ" /locus_tag="STM2892" /note="Surface presentation of antigens protein; Region: SPAN; pfam02510" /db_xref="CDD:280643" regulatory complement(3035256..3035261) /regulatory_class="ribosome_binding_site" /gene="spaO" /locus_tag="STM2891" /note="putative RBS for spaO; RegulonDB:STMS1H002953" gene complement(3036263..3036711) /gene="invI" /locus_tag="STM2893" /db_xref="GeneID:1254416" CDS complement(3036263..3036706) /gene="invI" /locus_tag="STM2893" /note="secretory proteins; surface presentation of antigens protein SPAM. (SW:SPAM_SALTY)" /codon_start=1 /transl_table=11 /product="surface presentation of antigens" /protein_id="NP_461814.1" /db_xref="GeneID:1254416" /translation="MHSLTRIKVLQRRCTVFHSQCESILLRYQDEDRGLQAEEEAILE QIAGLKLLLDTLRAENRQLSREEIYTLLRKQSIVRRQIKDLELQIIQIQEKRSELEKK REEFQKKSKYWLRKEGNYQRWIIRQKRFYIQREIQQEEAESEEII" misc_feature complement(3036266..3036706) /gene="invI" /locus_tag="STM2893" /note="type III secretion system protein SpaM; Provisional; Region: PRK15335" /db_xref="CDD:185235" regulatory complement(3036266..3036271) /regulatory_class="ribosome_binding_site" /gene="invI" /locus_tag="STM2893" /note="putative RBS for invJ; RegulonDB:STMS1H002954" gene complement(3036684..3037979) /gene="invC" /locus_tag="STM2894" /db_xref="GeneID:1254417" CDS complement(3036684..3037979) /gene="invC" /locus_tag="STM2894" /EC_number="7.1.2.2" /note="secretory proteins; probable ATP synthase SPAL. (SW:SPAL_SALTY)" /codon_start=1 /transl_table=11 /product="surface presentation of antigens" /protein_id="NP_461815.1" /db_xref="GeneID:1254417" /translation="MKTPRLLQYLAYPQKITGPIIEAELRDVAIGELCEIRRGWHQKQ VVARAQVVGLQRERTVLSLIGNAQGLSRDVVLYPTGRALSAWVGYSVLGAVLDPTGKI VERFTPEVAPISEERVIDVAPPSYASRVGVREPLITGVRAIDGLLTCGVGQRMGIFAS AGCGKTMLMHMLIEQTEADVFVIGLIGERGREVTEFVDMLRASHKKEKCVLVFATSDF PSVDRCNAAQLATTVAEYFRDQGKRVVLFIDSMTRYARALRDVALASGERPARRGYPA SVFDNLPRLLERPGATSEGSITAFYTVLLESEEEADPMADEIRSILDGHLYLSRKLAG QGHYPAIDVLKSVSRVFGQVTTPTHAEQASAVRKLMTRLEELQLFIDLGEYRPGENID NDRAMQMRDSLKAWLCQPVAQYSSFDDTLSGMNAFADQN" misc_feature complement(3036693..3037970) /gene="invC" /locus_tag="STM2894" /note="FliI/YscN family ATPase; Region: PRK08149" /db_xref="CDD:236166" regulatory complement(3036706..3036711) /regulatory_class="ribosome_binding_site" /gene="invI" /locus_tag="STM2893" /note="putative RBS for invI; RegulonDB:STMS1H002955" gene complement(3037976..3038390) /gene="invB" /locus_tag="STM2895" /db_xref="GeneID:1254418" CDS complement(3037976..3038383) /gene="invB" /locus_tag="STM2895" /note="secretory proteins; surface presentation of antigens protein SPAK. (SW:SPAK_SALTY)" /codon_start=1 /transl_table=11 /product="surface presentation of antigens" /protein_id="NP_461816.1" /db_xref="GeneID:1254418" /translation="MQHLDIAELVRSALEVSGCDPSLIGGIDSHSTIVLDLFALPSIC ISVKDDDVWIWAQLGADSMVVLQQRAYEILMTIMEGCHFARGGQLLLGEQNGELTLKA LVHPDFLSDGEKFSTALNGFYNYLEVFSRSLMR" misc_feature complement(3037979..3038383) /gene="invB" /locus_tag="STM2895" /note="type III secretion system chaperone SpaK; Provisional; Region: PRK15336" /db_xref="CDD:185236" regulatory complement(3038385..3038390) /regulatory_class="ribosome_binding_site" /gene="invB" /locus_tag="STM2895" /note="putative RBS for invB; RegulonDB:STMS1H002956" gene complement(3038407..3040471) /gene="invA" /locus_tag="STM2896" /db_xref="GeneID:1254419" CDS complement(3038407..3040464) /gene="invA" /locus_tag="STM2896" /note="invasion protein INVA. (SW:INVA_SALTY)" /codon_start=1 /transl_table=11 /product="invasion protein" /protein_id="NP_461817.1" /db_xref="GeneID:1254419" /translation="MLLSLLNSARLRPELLILVLMVMIISMFVIPLPTYLVDFLIALN IVLAILVFMGSFYIDRILSFSTFPAVLLITTLFRLALSISTSRLILIEADAGEIIATF GQFVIGDSLAVGFVVFSIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLK AGIIDADAARERRSVLERESQLYGSFDGAMKFIKGDAIAGIIIIFVNFIGGISVGMTR HGMDLSSALSTYTMLTIGDGLVAQIPALLIAISAGFIVTRVNGDSDNMGRNIMTQLLN NPFVLVVTAILTISMGTLPGFPLPVFVILSVVLSVLFYFKFREAKRSAAKPKTSKGEQ PLSIEEKEGSSLGLIGDLDKVSTETVPLILLVPKSRREDLEKAQLAERLRSQFFIDYG VRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRVVNYSDEVVSFGINPTIHQ QGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARNVNEYFGIQETKHMLDQ LEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKLIMEALALWAPREKDVINL VEHIRGAMARYICHKFANGGELRAVMVSAEVEDVIRKGIRQTSGSTFLSLDPEASANL MDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSFGEIADSKSVNVI KTI" misc_feature complement(3038410..3040464) /gene="invA" /locus_tag="STM2896" /note="EscV/YscV/HrcV family type III secretion system export apparatus protein; Region: PRK15337" /db_xref="CDD:237946" regulatory complement(3040466..3040471) /regulatory_class="ribosome_binding_site" /gene="invA" /locus_tag="STM2896" /note="putative RBS for invA; RegulonDB:STMS1H002957" gene complement(3040489..3041615) /gene="invE" /locus_tag="STM2897" /db_xref="GeneID:1254420" CDS complement(3040489..3041607) /gene="invE" /locus_tag="STM2897" /note="invasion protein ONVE. (SW:INVE_SALTY)" /codon_start=1 /transl_table=11 /product="invasion protein" /protein_id="NP_461818.1" /db_xref="GeneID:1254420" /translation="MIPGSTSGISFSRILSRQTSHQDATQHTDAQQAEIQQAAEDSSP GAEVQKFVQSTDEMSAALAQFRNRRDYEKKSSNLSNSFERVLEDEALPKAKQILKLIS VHGGALEDFLRQARSLFPDPSDLVLVLRELLRRKDLEEIVRKKLESLLKHVEEQTDPK TLKAGINCALKARLFGKTLSLKPGLLRASYRQFIQSESHEVEIYSDWIASYGYQRRLV VLDFIEGSLLTDIDANDASCSRLEFGQLLRRLTQLKMLRSADLLFVSTLLSYSFTKAF NAEESSWLLLMLSLLQQPHEVDSLLADIIGLNALLLSHKEHASFLQIFYQVCKAIPSS LFYEEYWQEELLMALRSMTDIAYKHEMAEQRRTIEKLS" misc_feature complement(3040492..3041607) /gene="invE" /locus_tag="STM2897" /note="YopN/LcrE/InvE/MxiC type III secretion system gatekeeper; Region: PRK15338" /db_xref="CDD:237947" gene complement(3041604..3043292) /gene="invG" /locus_tag="STM2898" /db_xref="GeneID:1254421" CDS complement(3041604..3043292) /gene="invG" /locus_tag="STM2898" /note="INVG protein precursor. (SW:INVG_SALTY)" /codon_start=1 /transl_table=11 /product="outer membrane invasion protein" /protein_id="NP_461819.1" /db_xref="GeneID:1254421" /translation="MKTHILLARVLACAALVLVTPGYSSEKIPVTGSGFVAKDDSLRT FFDAMALQLKEPVIVSKMAARKKITGNFEFHDPNALLEKLSLQLGLIWYFDGQAIYIY DASEMRNAVVSLRNVSLNEFNNFLKRSGLYNKNYPLRGDNRKGTFYVSGPPVYVDMVV NAATMMDKQNDGIELGRQKIGVMRLNNTFVGDRTYNLRDQKMVIPGIATAIERLLQGE EQPLGNIVSSEPPAMPAFSANGEKGKAANYAGGMSLQEALKQNAAAGNIKIVAYPDTN SLLVKGTAEQVHFIEMLVKALDVAKRHVELSLWIVDLNKSDLERLGTSWSGSITIGDK LGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK LIGERNVALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNVV RVFMIEPKEIVDPLTPDASESVNNILKQSGAWSGDDKLQKWVRVYLDRGQEAIK" misc_feature complement(3041607..3043289) /gene="invG" /locus_tag="STM2898" /note="EscC/YscC/HrcC family type III secretion system outer membrane ring protein; Region: PRK15339" /db_xref="CDD:237948" regulatory complement(3041610..3041615) /regulatory_class="ribosome_binding_site" /gene="invE" /locus_tag="STM2897" /note="putative RBS for invE; RegulonDB:STMS1H002958" gene complement(3043289..3043939) /gene="invF" /locus_tag="STM2899" /db_xref="GeneID:1254422" CDS complement(3043289..3043939) /gene="invF" /locus_tag="STM2899" /note="invasion protein INVF. (SW:INVF_SALTY)" /codon_start=1 /transl_table=11 /product="invasion protein" /protein_id="NP_461820.1" /db_xref="GeneID:1254422" /translation="MSFSESRHNENCLIQEGALLFCEQAVVAPVSGDLVFRPLKIEVL SKLLAFIDGAGLVDTTYAESDKWVLLSPEFRAIWQDRKRCEYWFLQQIITPSPAFNKV LALLRKSESYWLVGYLLAQSTSGNTMRMLGEDYGVSYTHFRRLCSRALGGKAKSELRN WRMAQSLLNSVEGHENITQLAVNHGYSSPSHFSSEIKELIGVSPRKLSNIIQLADK" misc_feature complement(3043292..3043939) /gene="invF" /locus_tag="STM2899" /note="AraC family transcriptional regulator InvF; Region: PRK15340" /db_xref="CDD:185240" gene 3044391..3044839 /gene="invH" /locus_tag="STM2900" /db_xref="GeneID:1254423" regulatory 3044391..3044396 /regulatory_class="ribosome_binding_site" /gene="invH" /locus_tag="STM2900" /note="putative RBS for invH; RegulonDB:STMS1H002959" CDS 3044396..3044839 /gene="invH" /locus_tag="STM2900" /note="invasion protein INVH precursor. (SW:INVH_SALTY)" /codon_start=1 /transl_table=11 /product="invasion protein" /protein_id="NP_461821.1" /db_xref="GeneID:1254423" /translation="MKKFYSCLPVFLLIGCAQVPLPSSVSKPVQQPGAQKEQLANANS IDECQSLPYVPSDLAKNKSLSNHNADNSASKNSAISSSIFCEKYKQTKEQALTFFQEH PQYMRSKEDEEQLMTEFKKVLLEPGSKNLSIYQTLLAAHERLQAL" misc_feature 3044396..3044836 /gene="invH" /locus_tag="STM2900" /note="InvH outer membrane lipoprotein; Region: InvH; pfam04741" /db_xref="CDD:282582" gene 3045264..3045719 /locus_tag="STM2901" /db_xref="GeneID:1254424" regulatory 3045264..3045269 /regulatory_class="ribosome_binding_site" /locus_tag="STM2901" /note="putative RBS for STM2901; RegulonDB:STMS1H002960" CDS 3045270..3045719 /locus_tag="STM2901" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461822.1" /db_xref="GeneID:1254424" /translation="MDTTEELNGTYFYHGQSNLSAGELFDVIFIEQFCDELGIGIESG AAILAGQPWLKTRTKPGEAIKGTSVISRYGRMLLRNARTPFGIRVPTPVGIRMRKTNN LAAVIARYVPWLGWVGLVNSIYQVSRRTQAKYNLIARPKDRIQWTSF" gene 3045704..3046051 /locus_tag="STM2902" /db_xref="GeneID:1254425" CDS 3045704..3046051 /locus_tag="STM2902" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461823.1" /db_xref="GeneID:1254425" /translation="MDILLMDTIQQEVLALFREEIPGYLDSNWKEIPLELDSDLFEAP GDDLHEALDKFEKKFNVDLSQVKWSCYFPWENTPLLTRWFKLKREDVERTRKPLTIRM FSESAKAGKWLYD" misc_feature 3045719..3046048 /locus_tag="STM2902" /note="Protein of unknown function (DUF1493); Region: DUF1493; pfam07377" /db_xref="CDD:399982" gene complement(3046324..3046656) /locus_tag="STM2903" /db_xref="GeneID:1254426" CDS complement(3046324..3046650) /locus_tag="STM2903" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461824.1" /db_xref="GeneID:1254426" /translation="MEEVNSEFTIVVESDLDKYELIDFLSQGIPDIIKVNLLYLRYEN TMITIERNYDCNPKLINENDGWLYYKYELTVFSMENTSYEYQYELANKIMNALREAGY LAESIW" regulatory complement(3046651..3046656) /regulatory_class="ribosome_binding_site" /locus_tag="STM2903" /note="putative RBS for STM2903; RegulonDB:STMS1H002961" gene 3047331..3047629 /locus_tag="STM2904" /db_xref="GeneID:1254427" regulatory 3047331..3047336 /regulatory_class="ribosome_binding_site" /locus_tag="STM2904" /note="putative RBS for STM2904; RegulonDB:STMS1H002962" CDS 3047339..3047629 /locus_tag="STM2904" /codon_start=1 /transl_table=11 /product="putative ABC-type transport system" /protein_id="NP_461825.1" /db_xref="GeneID:1254427" /translation="MKTMPQIAIESNERLSLRVSTDAKKLIVRAAAIQQTNLTDFVVS NILPVAQKIVDAAERVYLTERDTKMIMEILDNPPAPNEKLLAAAFALPDMKK" misc_feature 3047381..3047605 /locus_tag="STM2904" /note="Protein of unknown function (DUF1778); Region: DUF1778; pfam08681" /db_xref="CDD:462557" gene 3047621..3048153 /locus_tag="STM2905" /db_xref="GeneID:1254428" regulatory 3047621..3047626 /regulatory_class="ribosome_binding_site" /locus_tag="STM2904" /note="putative RBS for STM2905; RegulonDB:STMS1H002963" CDS 3047626..3048153 /locus_tag="STM2905" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_461826.1" /db_xref="GeneID:1254428" /translation="MMFTDWHEAAIGKTHNRMNFDCGDADLNQFLQRHARQNHEKGTT KTYVALDNSDVTRIHGFYSVSPASLIYAQVPGAISKGLGRYDVPVFRLGRLAVDKSMQ GQGLGAQLLLSAGKRCIQAALQVGGVALLIDAKNKQVCDWYKGFGAVPLNDQPLSLLL SFKTLYAALSASGRL" misc_feature <3047878..3048075 /locus_tag="STM2905" /note="Predicted N-acyltransferase, GNAT family [General function prediction only]; Region: ElaA; COG2153" /db_xref="CDD:441756" gene complement(3048226..3048418) /locus_tag="STM2906" /db_xref="GeneID:1254429" CDS complement(3048226..3048414) /locus_tag="STM2906" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_449286.1" /db_xref="GeneID:1254429" /translation="MEKKVGYHRRSVVETAMFRIKTLLGGHLSLRNYDAQVGEAMAMV KALNRMTLLAMPTSVRLV" misc_feature complement(3048262..>3048411) /locus_tag="STM2906" /note="IS5 family transposase; Region: transpos_IS5_2; NF033579" /db_xref="CDD:468096" regulatory complement(3048413..3048418) /regulatory_class="ribosome_binding_site" /locus_tag="STM2906" /note="putative RBS for STM2906; RegulonDB:STMS1H002964" gene 3048768..3049434 /gene="pphB" /locus_tag="STM2907" /db_xref="GeneID:1254430" regulatory 3048768..3048773 /regulatory_class="ribosome_binding_site" /gene="pphB" /locus_tag="STM2907" /note="putative RBS for pphB; RegulonDB:STMS1H002965" CDS 3048778..3049434 /gene="pphB" /locus_tag="STM2907" /EC_number="3.1.3.16" /note="similar to E. coli protein phosphatase 2 (AAC75776.1); Blastp hit to AAC75776.1 (218 aa), 60% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="serine/threonine specific protein phosphatase 2" /protein_id="NP_461828.1" /db_xref="GeneID:1254430" /translation="MELIRYADINSDLYRHIWVVGDIHGCYSLLLTRLAQLNFSPDTD LLISTGDNIDRGKENLETLRLLNTPWFISVVGNHEAMALDAFETQDGNFWYVNGGYWY DSVTEKDRQEATELLLTFKQRPHIIEVETSSKKYVIAHADYPDDSYDYGKQVDIDSVL WSRDRLLGSLQGNIHPIRGADTFIFGHMIVDYTTTFANQIYIDTGSFCSGNLSFFKIK " misc_feature 3048778..3049431 /gene="pphB" /locus_tag="STM2907" /note="protein-serine/threonine phosphatase; Region: PRK09968" /db_xref="CDD:182173" misc_feature order(3048841..3048843,3048847..3048849,3048928..3048930, 3049006..3049011,3049195..3049197,3049336..3049338) /gene="pphB" /locus_tag="STM2907" /note="active site" /db_xref="CDD:277317" misc_feature order(3048841..3048843,3048847..3048849,3048928..3048930, 3049006..3049008,3049195..3049197,3049336..3049338) /gene="pphB" /locus_tag="STM2907" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:277317" gene complement(3049606..3050134) /locus_tag="STM2908" /db_xref="GeneID:1254431" CDS complement(3049606..3050127) /locus_tag="STM2908" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461829.1" /db_xref="GeneID:1254431" /translation="MKTTLSQPFIINKLSINVKPALSRSGKIVFEANPAQKLYTVFDD HREAPAGFGVKASLTKKTYVIQRRVASSDRNVSEGRKPSSVLKVKVGNVFDFPNIDET RQAARQLVQTMLATKRNFNKIKRETDASELETVIKIVLHEGKPIHFATTVIAFSSDRY LELCDLYSSQAIE" regulatory complement(3050129..3050134) /regulatory_class="ribosome_binding_site" /locus_tag="STM2908" /note="putative RBS for STM2908; RegulonDB:STMS1H002966" gene 3050270..3052853 /gene="mutS" /locus_tag="STM2909" /db_xref="GeneID:1254432" regulatory 3050270..3050275 /regulatory_class="ribosome_binding_site" /gene="mutS" /locus_tag="STM2909" /note="putative RBS for mutS; RegulonDB:STMS1H002967" CDS 3050286..3052853 /gene="mutS" /locus_tag="STM2909" /note="recognizes exocyclic adducts of guanosine; DNA mismatch repair protein MUTS. (SW:MUTS_SALTY)" /codon_start=1 /transl_table=11 /product="methyl-directed mismatch repair" /protein_id="NP_461830.1" /db_xref="GeneID:1254432" /translation="MNESFDKDFSNHTPMMQQYLKLKAQHPEILLFYRMGDFYELFYD DAKRASQLLDISLTKRGASAGEPIPMAGIPHHAVENYLAKLVNQGESVAICEQIGDPA TSKGPVERKVVRIVTPGTISDEALLQERQDNLLAAIWQDGKGYGYATLDISSGRFRLS EPADRETMAAELQRTNPAELLYAEDFAEMALIEGRRGLRRRPLWEFEIDTARQQLNLQ FGTRDLVGFGVENASRGLCAAGCLLQYVKDTQRTSLPHIRSITMERQQDSIIMDAATR RNLEITQNLAGGVENTLAAVLDCTVTPMGSRMLKRWLHMPVRNTDILRERQQTIGALQ DTVSELQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQLPELHAQLETVDSAPV QALRKKMGDFAELRDLLERAIIDAPPVLVRDGGVIAPGYHEELDEWRALADGATDYLD RLEIRERERTGLDTLKVGYNAVHGYYIQISRGQSHLAPINYVRRQTLKNAERYIIPEL KEYEDKVLTSKGKALALEKQLYDELFDLLLPHLADLQQSANALAELDVLVNLAERAWT LNYTCPTFTDKPGIRITEGRHPVVEQVLNEPFIANPLNLSPQRRMLIITGPNMGGKST YMRQTALIALLAYIGSYVPAQNVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANI LHNATENSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEK MEGVANVHLDALEHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLREL ESISPNAAATQVDGTQMSLLAAPEETSPAVEALENLDPDSLTPRQALEWIYRLKSLV" misc_feature 3050304..3052850 /gene="mutS" /locus_tag="STM2909" /note="DNA mismatch repair protein MutS; Provisional; Region: PRK05399" /db_xref="CDD:235444" gene complement(3052909..3053296) /locus_tag="STM2910" /db_xref="GeneID:1254433" CDS complement(3052909..3053289) /locus_tag="STM2910" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461831.1" /db_xref="GeneID:1254433" /translation="MNPYKEEIIHAHAAIENWLSKGVGSLEALIARFAADFTMITPGG VCLDYPALGAFFQAQRACRPGLVIVVEHIDLVAEWPEGAALRYRERQQLPGQAETVRW STVILKRERGRIVWRHLHETTVTA" misc_feature complement(3052912..3053289) /locus_tag="STM2910" /note="Uncharacterized conserved protein, DUF4440 domain [Function unknown]; Region: COG4460" /db_xref="CDD:443558" gene complement(3053286..3054501) /locus_tag="STM2911" /db_xref="GeneID:1254434" CDS complement(3053286..3054494) /locus_tag="STM2911" /note="similar to E. coli multidrug resistance; probably membrane translocase (AAC75733.1); Blastp hit to AAC75733.1 (512 aa), 29% identity in aa 15 - 201, 30% identity in aa 284 - 319" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_461832.1" /db_xref="GeneID:1254434" /translation="MTYRSKVAVVYLLGFFLDLINLFIASVAFPAMSVDLHTSISALA WVSNGYIAGLTLIVPFSAFLSRYLGARRLIIFSLILFSVAAAAAGFADSLHSLVFWRI VQGAGGGLLIPVGQALTWQQFKPHERAGVSSVVMMVALLAPACSPAIGGLLVETCGWR WIFFATLPVAVLTLLLAYRWLNVASTTMASARLLHLPLLTDRLLRFAMIVYLCVPGMF IGISVVGMFYLQNVAQLSPAAAGSLMIPWSIASFVAIMLTGRYFNRLGPRPLIIVGCL LQAAGILLLTNVTPATSHRVLMMIFALMGAGGSLCSSTAQSGAFLTIARRDMPDASAL WNLNRQISFFLGATLLTLLLNALQRVMSLEVAYRWTFIAAAGITLLPLIYAVCLNNRQ ALLCLKKERS" misc_feature complement(3053346..3054464) /locus_tag="STM2911" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature complement(order(3053475..3053480,3053487..3053492, 3053499..3053501,3053547..3053549,3053559..3053561, 3053571..3053576,3053730..3053732,3053742..3053744, 3053826..3053828,3053835..3053843,3053850..3053855, 3053862..3053864,3054066..3054068,3054075..3054080, 3054087..3054089,3054147..3054149,3054156..3054164, 3054168..3054173,3054321..3054323,3054417..3054419, 3054426..3054431,3054438..3054443)) /locus_tag="STM2911" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:349949" regulatory complement(3053291..3053296) /regulatory_class="ribosome_binding_site" /locus_tag="STM2910" /note="putative RBS for STM2910; RegulonDB:STMS1H002968" regulatory complement(3054496..3054501) /regulatory_class="ribosome_binding_site" /locus_tag="STM2911" /note="putative RBS for STM2911; RegulonDB:STMS1H002969" gene 3054582..3055514 /locus_tag="STM2912" /db_xref="GeneID:1254435" CDS 3054582..3055514 /locus_tag="STM2912" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73313.1); Blastp hit to AAC73313.1 (304 aa), 32% identity in aa 6 - 289" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461833.1" /db_xref="GeneID:1254435" /translation="MTVKELAMLNLQRMSLFIAVVDSGSFTAAAAASGQTKAVVSFNI RQLEKELGVTLLLRSTRRLTLTDAGVLFYQKGVNLLNAAKNLQDEVRASHSGLGGELR ITTTPEFGEQVIIPLLAQFSQRHPDLRIRHMSSSHHADLIAERFDVAIRLGSLADSRY RAALISRFTILPVAAPQWLARNPVSSLESLAQAEWIIHERLPTPLRWTVTSNHGQHSR LEISKAGKISVDSARSLMAFALAGSGVALLPQWLVNTALEDGTLIHVLPDYHFPRQGI YAVYPDARHVSTKVRAFIDFLRSQWDCGEHAPSS" misc_feature 3054603..>3055031 /locus_tag="STM2912" /note="DNA-binding transcriptional regulator CynR; Provisional; Region: PRK11242" /db_xref="CDD:183051" misc_feature 3054876..3055472 /locus_tag="STM2912" /note="The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain; Region: PBP2_CrgA_like; cd08422" /db_xref="CDD:176114" misc_feature order(3054906..3054908,3054918..3054920,3055035..3055037, 3055077..3055079,3055083..3055085,3055275..3055277, 3055326..3055328,3055407..3055409) /locus_tag="STM2912" /note="putative effector binding pocket [active]" /db_xref="CDD:176114" misc_feature order(3054909..3054914,3054924..3054929,3054933..3054938, 3054945..3054947,3054957..3054959,3054963..3054983, 3055161..3055163,3055257..3055271,3055290..3055295, 3055302..3055304) /locus_tag="STM2912" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176114" gene complement(3055556..3057059) /locus_tag="STM2913" /db_xref="GeneID:1254436" CDS complement(3055556..3057052) /locus_tag="STM2913" /note="similar to E. coli putative transport protein (AAC75782.1); Blastp hit to AAC75782.1 (454 aa), 33% identity in aa 11 - 446" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_461834.1" /db_xref="GeneID:1254436" /translation="MTSLPTPIIGLIVAVFVLVWLVLRTRVHALIAMLAAACIAGLLG GMGIDKTLSVITSGFGTTLGSIGLVIGLGVMMGRLLEVSGAAERIAWSFIKWLGKRRE EWALAITGYIVSIPIFVDSAFVILYPVAKALAKSGKRSLLTLGVALAGGLVVTHHTVP PTPGPLGVAGIFNVDIGAMLLTGMALAVPCVIGIVFYAQWLDKRYPDFVPRTLNADEV NAALEQYNKEKEQKELPSLTLSLLPIVVPIVLIFLKAICSTLATVEGWSGLATHPVVQ AINFVGSPVIALAISVLLAVYTLVPRMDKHTTAERLEEGLQSAGIILLVTGAGGALGA ILRDSGAGQQLAEQVANLPISPILIPFIVATLVRLIQGSGTVAMITAASISAPILAQI PGINMLLAAQAATMGSLFFGYFNDSLFWVVNRMMGVSDVKQQMVVWSVPTTIAWAIGG TGVVLINLLFGSGGSWLDPLLPIVVLAAIMLWVRWQAQGIKDKLVVKD" misc_feature complement(3055670..3057040) /locus_tag="STM2913" /note="H+/gluconate symporter GntT or related permease, GntP/DsdX family [Carbohydrate transport and metabolism]; Region: GntT; COG2610" /db_xref="CDD:442022" gene complement(3057049..3058006) /locus_tag="STM2914" /db_xref="GeneID:1254437" CDS complement(3057049..3057999) /locus_tag="STM2914" /note="similar to E. coli UDP-galactose-4-epimerase (AAC73846.1); Blastp hit to AAC73846.1 (338 aa), 25% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="putative nucleoside-diphosphate-sugar epimerase" /protein_id="NP_461835.1" /db_xref="GeneID:1254437" /translation="MQIIITGGGGFLGQKLASALLNSSLAFNELLLVDLKMPARLSDS PRLRCLEADLTQPGVLESVITANTSVVYHLAAIVSSHAEDDFDLGWKVNLDLTRQLLE ACRRQPQKIRFVFSSSLAVYGGTLPECVTDTTALTPRSSYGAQKAACELLVNDYTRKG YVDGLALRLPTICVRPGKPNRAASSFVSAIIREPLQGETTVCPVSESLRLWISSPATV IHNLSLAATLPAPGEASSINLPGISVTVGEMLETLCQAGGQAARDRVTHQRDEGVEKI VASWPGRIDNQRALALGFVADKRFDDIIERFRQDDMEGRS" misc_feature complement(3057088..3057999) /locus_tag="STM2914" /note="Escherichia coli Gne (a nucleoside-diphosphate-sugar 4-epimerase)-like, extended (e) SDRs; Region: Gne_like_SDR_e; cd05238" /db_xref="CDD:187549" misc_feature complement(order(3057484..3057495,3057562..3057564, 3057574..3057576,3057646..3057654,3057724..3057726, 3057772..3057780,3057898..3057906,3057964..3057975, 3057979..3057981)) /locus_tag="STM2914" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187549" misc_feature complement(order(3057562..3057564,3057574..3057576, 3057646..3057648,3057721..3057723)) /locus_tag="STM2914" /note="active site" /db_xref="CDD:187549" misc_feature complement(order(3057394..3057396,3057430..3057432, 3057487..3057489,3057574..3057576,3057646..3057648)) /locus_tag="STM2914" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:187549" regulatory complement(3057054..3057059) /regulatory_class="ribosome_binding_site" /locus_tag="STM2914" /note="putative RBS for STM2913; RegulonDB:STMS1H002970" regulatory complement(3058001..3058006) /regulatory_class="ribosome_binding_site" /locus_tag="STM2914" /note="putative RBS for STM2914; RegulonDB:STMS1H002971" gene complement(3058039..3058829) /gene="ygbM" /locus_tag="STM2915" /db_xref="GeneID:1254438" CDS complement(3058039..3058815) /gene="ygbM" /locus_tag="STM2915" /note="similar to E. coli orf, hypothetical protein (AAC75781.1); Blastp hit to AAC75781.1 (258 aa), 79% identity in aa 1 - 258" /codon_start=1 /transl_table=11 /product="putative endonuclease" /protein_id="NP_461836.1" /db_xref="GeneID:1254438" /translation="MPRFAANLSMMFTEAPFIERFAAAAEAGFQAVEFLFPYDFAASE IKAQLSRHNLTLALFNTSAGDTAAGEWGRAALPGREHDARADIDLALEYALALECEQV HIMAGVVPDGADGARYRATFIDNLRYAADRFAAHDKRILIEALSPGVKPGYLFSSQYQ ALGIAEEVDRPNVFIQLDTFHAQKVDGNLSHLIREYAGRYAHVQIASLPDRHEPDDGE INYPWLFRLFDDVGYRGWIGCEYQPRNTTQDGLGWFNAWR" misc_feature complement(3058042..3058815) /gene="ygbM" /locus_tag="STM2915" /note="HPr family phosphocarrier protein; Region: PRK09989" /db_xref="CDD:182185" gene complement(3058820..3059473) /gene="ygbL" /locus_tag="STM2916" /db_xref="GeneID:1254439" CDS complement(3058820..3059458) /gene="ygbL" /locus_tag="STM2916" /note="similar to E. coli putative epimerase/aldolase (AAC75780.1); Blastp hit to AAC75780.1 (212 aa), 85% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="putative fuculose phosphate aldolase" /protein_id="NP_461837.1" /db_xref="GeneID:1254439" /translation="MTILAKEEHALREEMVRIAASFFQRGYATGSAGNLSLLLPDGNI LATPTGSCLGNLDPQRLSKVDPQGEWLSGDKPSKEVRFHLALYRNNPCCKAVVHLHST WSTALSCLEGLDPQNVIRPFTPYVVMRMGDIPLVPYYRPGDDRIARDLAALAARHQAF LLANHGPVVCGENLQEAANNTEELEETAKLIFILGERPIRYLTTEEIAQLRR" misc_feature complement(3058823..3059440) /gene="ygbL" /locus_tag="STM2916" /note="putative aldolase; Validated; Region: PRK08130" /db_xref="CDD:181241" misc_feature complement(order(3058964..3058966,3059159..3059161, 3059165..3059167,3059222..3059230,3059309..3059314, 3059357..3059359)) /gene="ygbL" /locus_tag="STM2916" /note="active site" /db_xref="CDD:238229" misc_feature complement(order(3058964..3058966,3059159..3059161, 3059165..3059167)) /gene="ygbL" /locus_tag="STM2916" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238229" regulatory complement(3058824..3058829) /regulatory_class="ribosome_binding_site" /gene="ygbL" /locus_tag="STM2916" /note="putative RBS for ygbM; RegulonDB:STMS1H002972" gene complement(3059455..3060728) /gene="ygbK" /locus_tag="STM2917" /db_xref="GeneID:1254440" CDS complement(3059455..3060717) /gene="ygbK" /locus_tag="STM2917" /note="similar to E. coli orf, hypothetical protein (AAC75779.1); Blastp hit to AAC75779.1 (388 aa), 79% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="putative tRNA synthase" /protein_id="NP_461838.1" /db_xref="GeneID:1254440" /translation="MLKIGVIADDFTGATDIASFLVENGMPTVQINDVPTGTQPEGCD AVVISLKTRSCPAQEAIKQSLAALVWLKKQGCQQVYFKYCSTFDSTAEGNIGPVTDAL MVALDTSFTVISPALPVNGRTVYQGYLFVMNHLLAESGMRHHPINPMTDSYLPRLMEA QAQGRCGVIPAQTLDEGVAATRAALSRLQQEGYRYAVLDALNERHLEIQGEVLRDAPL VTGGSGLAMGLARQWAKHGVSQARSAGYPLSGRAVVLSGSCSQMTNQQVAFYRQHAPT RDVDVARCLSSETREAYAEALAQWVLSQDSELAPMISATASTQALAAIQQQYGATEAS HAVEALFSLLAARLAEGGITRFIVAGGETSGVVTQSLGITGFHIGPCISPGVPWVNAL HAPVSLALKSGNFGDESFFIRAQREFQV" misc_feature complement(3059470..3060711) /gene="ygbK" /locus_tag="STM2917" /note="D-threonate/D-erythronate kinase OtnK and related C4-acid sugar kinases, YgbK/DUF1537 family [Carbohydrate transport and metabolism]; Region: OtnK; COG3395" /db_xref="CDD:442622" regulatory complement(3059468..3059473) /regulatory_class="ribosome_binding_site" /gene="ygbL" /locus_tag="STM2916" /note="putative RBS for ygbL; RegulonDB:STMS1H002973" gene complement(3060711..3061645) /gene="ygbJ" /locus_tag="STM2918" /db_xref="GeneID:1254441" CDS complement(3060711..3061634) /gene="ygbJ" /locus_tag="STM2918" /note="similar to E. coli putative dehydrogenase (AAC75778.1); Blastp hit to AAC75778.1 (302 aa), 82% identity in aa 1 - 299" /codon_start=1 /transl_table=11 /product="3-hydroxyisobutyrate dehydrogenase" /protein_id="NP_461839.1" /db_xref="GeneID:1254441" /translation="MTTGTDFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACAN LLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSST ISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAV ASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAG NSWMFENRMQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFPLPLASTALNMFTSAS NAGYGKEDDSAVIKIFSGITLPGVTPEEPSC" misc_feature complement(3060759..3061613) /gene="ygbJ" /locus_tag="STM2918" /note="3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase [Lipid transport and metabolism]; Region: MmsB; COG2084" /db_xref="CDD:441687" regulatory complement(3060723..3060728) /regulatory_class="ribosome_binding_site" /gene="ygbJ" /locus_tag="STM2918" /note="putative RBS for ygbK; RegulonDB:STMS1H002974" regulatory complement(3061640..3061645) /regulatory_class="ribosome_binding_site" /gene="ygbJ" /locus_tag="STM2918" /note="putative RBS for ygbJ; RegulonDB:STMS1H002975" gene 3061819..3062595 /gene="ygbI" /locus_tag="STM2919" /db_xref="GeneID:1254442" regulatory 3061819..3061824 /regulatory_class="ribosome_binding_site" /gene="ygbI" /locus_tag="STM2919" /note="putative RBS for ygbI; RegulonDB:STMS1H002976" CDS 3061831..3062595 /gene="ygbI" /locus_tag="STM2919" /note="similar to E. coli putative DEOR-type transcriptional regulator (AAC75777.1); Blastp hit to AAC75777.1 (265 aa), 86% identity in aa 11 - 263" /codon_start=1 /transl_table=11 /product="putative regulatory protein, deoR family" /protein_id="NP_461840.1" /db_xref="GeneID:1254442" /translation="MIPTERRQIILDMVAEKGIVSIAELTERMHVSHMTIRRDLQKLE QQGAVIQVSGGVQSSTRVAHEPSHQIKTELATPQKAAIGKLAASLVQPESCIYLDAGT TTLAIARQLVTMNKLTVVTNDFVIADYLMDNSNCTIIHTGGAVCRENRSCVGEAAATL LRGLMIDQAFISASSWSVRGISTPAEDKVTVKRAVASASRQKILVCDATKYGQVATWL ALPLAEFNQIVTDDGLPESAIRALAKVDISLLMAKQ" misc_feature 3061831..3062589 /gene="ygbI" /locus_tag="STM2919" /note="DNA-binding transcriptional repressor YgbI; Region: trans_reg_YgbI; NF040890" /db_xref="CDD:468826" gene complement(3062614..3063025) /locus_tag="STM2920" /db_xref="GeneID:1254443" CDS complement(3062614..3063018) /locus_tag="STM2920" /note="similar to E. coli transcriptional regulator for cryptic hemolysin (AAC74714.1); Blastp hit to AAC74714.1 (146 aa), 27% identity in aa 1 - 135" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_461841.1" /db_xref="GeneID:1254443" /translation="MELRNTAFHLLRQLFQQHTARWQHELPELTKPQYAVMRVIAEHP GIEQVDLTEAAVSTKATLAEMLSRMENRGLVKRENDPLDKRRRFVYLTVQGQTLLTAA IPLGDRVDDEFLGRLSAEEREQFTQLVRKMMT" misc_feature complement(3062620..3062997) /locus_tag="STM2920" /note="DNA-binding transcriptional regulator, MarR family [Transcription]; Region: MarR; COG1846" /db_xref="CDD:441451" regulatory complement(3063020..3063025) /regulatory_class="ribosome_binding_site" /locus_tag="STM2920" /note="putative RBS for STM2920; RegulonDB:STMS1H002977" gene 3063183..3063782 /locus_tag="STM2921" /db_xref="GeneID:1254444" regulatory 3063183..3063188 /regulatory_class="ribosome_binding_site" /locus_tag="STM2921" /note="putative RBS for STM2921; RegulonDB:STMS1H002978" CDS 3063189..3063782 /locus_tag="STM2921" /EC_number="4.1.1.-" /note="similar to E. coli 3-octaprenyl-4-hydroxybenzoate carboxy-lyase (AAC75371.1); Blastp hit to AAC75371.1 (189 aa), 55% identity in aa 3 - 188" /codon_start=1 /transl_table=11 /product="putative flavoprotein" /protein_id="NP_461842.1" /db_xref="GeneID:1254444" /translation="MRLIVGMTGATGAPLGVELLQALRAIPDVETHLVMSKWAKTTIE LETPYTPAEVAALADYCHSPADQAATISSGSFRTDGMIIIPCSMKTLAGVRAGYAEGL VGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAIVPPMPAFYNLPQTVDD IIQHIVARVLDQFGLEHTRTRRWQGLRQTANFSQENG" misc_feature 3063192..3063743 /locus_tag="STM2921" /note="non-oxidative hydroxyarylic acid decarboxylases subunit B; Region: VdcB; NF041206" /db_xref="CDD:469110" gene 3063774..3065209 /locus_tag="STM2922" /db_xref="GeneID:1254445" regulatory 3063774..3063779 /regulatory_class="ribosome_binding_site" /locus_tag="STM2921" /note="putative RBS for STM2922; RegulonDB:STMS1H002979" CDS 3063782..3065209 /locus_tag="STM2922" /note="similar to E. coli putative oxidoreductase (AAC76846.1); Blastp hit to AAC76846.1 (497 aa), 28% identity in aa 4 - 489" /codon_start=1 /transl_table=11 /product="putative 3-polyprenyl-4-hydroxybenzoate decarboxylase" /protein_id="NP_461843.1" /db_xref="GeneID:1254445" /translation="MAFDDLRSFLHALDQQGQLLKISEEVNAEPDLAAAANATGRIGD GAPALWFDNIRGFTDARVAMNTIGSWQNHAISLGLPPNTPVKKQIDEFIRRWDNFPVA PERRANPGWAENTVDGDAINLFDILPLFRLNDGDGGFYLDKACVVSRDPLDPDNFGKQ NVGIYRMEVKGKRKLGLQPVPMHDIALHLHKAEERGEDLPIAITLGNDPIITLMGATP LKYDQSEYEMAGALRESPYPIATAPLTGFDVPWGSEVILEGVIESRKREIEGPFGEFT GHYSGGRNMTVVRIDKVSYRSKPIFESLYLGMPWTEIDYLMGPATCVPLYQQLKAEFP EVQAVNAMYTHGLLAIISTKKRYGGFARAVGLRAMTTPHGLGYVKMVIMVDEDVDPFN LPQVMWALSSKVNPAGDLVQLPNMSVLELDPGSSPAGITDKLIIDATTPVAPDNRGHY SQPVVDLPETKAWAEKLTAMLANRK" misc_feature 3063788..3065191 /locus_tag="STM2922" /note="non-oxidative hydroxyarylic acid decarboxylases subunit C; Region: VdcC; NF041204" /db_xref="CDD:469108" gene 3065213..3065456 /locus_tag="STM2923" /db_xref="GeneID:1254446" regulatory 3065213..3065218 /regulatory_class="ribosome_binding_site" /locus_tag="STM2923" /note="putative RBS for STM2923; RegulonDB:STMS1H002980" CDS 3065220..3065456 /locus_tag="STM2923" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461844.1" /db_xref="GeneID:1254446" /translation="MICPRCADAHIELMATSPVKGVWTVYQCQHCLYTWRDTEPLRRT SREHYPQAFRMTQKDIDDAPMVPSIPPLLAEDKR" misc_feature 3065226..3065435 /locus_tag="STM2923" /note="non-oxidative hydroxyarylic acid decarboxylases subunit D; Region: VdcD; NF041205" /db_xref="CDD:469109" gene complement(3065501..3066506) /gene="rpoS" /locus_tag="STM2924" /db_xref="GeneID:1254447" CDS complement(3065501..3066493) /gene="rpoS" /locus_tag="STM2924" /note="major sigmafactor during stationary phase; RNA polymerase sigma factor RPOS (sigma-38). (SW:RPOS_SALTY)" /codon_start=1 /transl_table=11 /product="sigma S (sigma 38) factor of RNA polymerase" /protein_id="NP_461845.1" /db_xref="GeneID:1254447" /translation="MSQNTLKVHDLNEDAEFDENGVEAFDEKALSEEEPSDNDLAEEE LLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFARRALRGDVASRRRMIESNLRLV VKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNER ITSVDTPLGGDSEKALLDILADEKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLAR RFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQGLNIEALFRE" misc_feature complement(3065510..3066484) /gene="rpoS" /locus_tag="STM2924" /note="RNA polymerase sigma factor RpoS; Validated; Region: PRK05657" /db_xref="CDD:235548" regulatory complement(3066501..3066506) /regulatory_class="ribosome_binding_site" /gene="rpoS" /locus_tag="STM2924" /note="putative RBS for rpoS; RegulonDB:STMS1H002981" gene complement(3066556..3067808) /gene="nlpD" /locus_tag="STM2925" /db_xref="GeneID:1254448" CDS complement(3066556..3067689) /gene="nlpD" /locus_tag="STM2925" /note="lipoprotein NLPD. (SW:NLPD_SALTY)" /codon_start=1 /transl_table=11 /product="lipoprotein" /protein_id="NP_461846.1" /db_xref="GeneID:1254448" /translation="MSAGSPKFTVSRIAALSLVSLWLAGCTSSSNPPAPVTSVDSGSS SNTNSGMLITPPPKMGATTQQTPQQAPQIQPVQRPVTQPMQTQPVTEQPVQMENGRIV YNRQYGNIPKGSYTGGSTYTVKKGDTLFYIAWITGNDFRDLAQRNSISAPYSLNVGQT LQVGNASGTPITGGNAITQADAAQQGVVTRSAQNSTVAVASQPTITYSEGSGEQSANK MLPNNKPAGTVVTAPVTAPTVSTTEPNASSTSTSAPISAWRWPTDGKVIENFGASEGG NKGIDIAGSKGQAIVATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVRE QQEVKAGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR" misc_feature complement(3066559..3067689) /gene="nlpD" /locus_tag="STM2925" /note="murein hydrolase activator NlpD; Region: nlpD; PRK10871" /db_xref="CDD:236782" regulatory complement(3067695..3067700) /regulatory_class="ribosome_binding_site" /gene="nlpD" /locus_tag="STM2925" /note="putative RBS for nlpD; RegulonDB:STMS1H002982" regulatory complement(3067780..3067788) /regulatory_class="minus_10_signal" /gene="nlpD" /locus_tag="STM2925" /note="putative -10_signal for nlpD; RegulonDB:STMLTH004565" regulatory complement(3067800..3067808) /regulatory_class="minus_35_signal" /gene="nlpD" /locus_tag="STM2925" /note="putative -35_signal for nlpD; RegulonDB:STMLTH004565" gene complement(3067865..3068508) /gene="pcm" /locus_tag="STM2926" /db_xref="GeneID:1254449" CDS complement(3067865..3068491) /gene="pcm" /locus_tag="STM2926" /EC_number="2.1.1.77" /note="similar to E. coli L-isoaspartate protein carboxylmethyltransferase type II (AAC75785.1); Blastp hit to AAC75785.1 (208 aa), 94% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="L-isoaspartate protein carboxylmethyltransferase type II" /protein_id="NP_461847.1" /db_xref="GeneID:1254449" /translation="MVSGRVQALLEQLRAQGIRDEQVLNALAAVPREKFIDEAFEHKA WENIALPIGQGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHLVHHVCS VERIKGLQWQARRRLKQLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPPEIPTALMA QLDEGGILVLPVGDEQQFLKRVRRRGGEFIIDTVEAVRFVPLVKGELA" misc_feature complement(3067868..3068491) /gene="pcm" /locus_tag="STM2926" /note="protein-L-isoaspartate(D-aspartate) O-methyltransferase; Region: pcm; PRK00312" /db_xref="CDD:178974" misc_feature complement(order(3068048..3068050,3068096..3068104, 3068177..3068182,3068228..3068248)) /gene="pcm" /locus_tag="STM2926" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(3068485..3069256) /gene="surE" /locus_tag="STM2927" /db_xref="GeneID:1254450" CDS complement(3068485..3069246) /gene="surE" /locus_tag="STM2927" /note="similar to E. coli survival protein (AAC75786.1); Blastp hit to AAC75786.1 (253 aa), 91% identity in aa 1 - 253" /codon_start=1 /transl_table=11 /product="survival protein, protein damage control" /protein_id="NP_461848.1" /db_xref="GeneID:1254450" /translation="MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNS LTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVI YSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNV PDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVD EGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW" misc_feature complement(3068512..3069246) /gene="surE" /locus_tag="STM2927" /note="5'(3')-nucleotidase/polyphosphatase; Provisional; Region: surE; PRK00346" /db_xref="CDD:234732" regulatory complement(3068503..3068508) /regulatory_class="ribosome_binding_site" /gene="pcm" /locus_tag="STM2926" /note="putative RBS for pcm; RegulonDB:STMS1H002983" gene complement(3069227..3070287) /gene="ygbO" /locus_tag="STM2928" /db_xref="GeneID:1254451" CDS complement(3069227..3070276) /gene="ygbO" /locus_tag="STM2928" /note="similar to E. coli putative hydrogenase subunit (AAC75787.1); Blastp hit to AAC75787.1 (349 aa), 89% identity in aa 1 - 349" /codon_start=1 /transl_table=11 /product="putative hydrogenase subunit" /protein_id="NP_461849.1" /db_xref="GeneID:1254451" /translation="MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHI LLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFS AFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYF GAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQ VVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQ DAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVV RELINTMGDYAHIAE" misc_feature complement(3069257..3070276) /gene="ygbO" /locus_tag="STM2928" /note="tRNA pseudouridine synthase D; Reviewed; Region: truD; PRK00984" /db_xref="CDD:234884" misc_feature complement(3070178..3070198) /gene="ygbO" /locus_tag="STM2928" /note="Permutation of conserved domain. [active]" /db_xref="CDD:211340" misc_feature complement(3070037..3070048) /gene="ygbO" /locus_tag="STM2928" /note="active site" /db_xref="CDD:211340" regulatory complement(3069251..3069256) /regulatory_class="ribosome_binding_site" /gene="surE" /locus_tag="STM2927" /note="putative RBS for surE; RegulonDB:STMS1H002984" gene complement(3070273..3070766) /gene="ispF" /locus_tag="STM2929" /db_xref="GeneID:1254452" CDS complement(3070273..3070752) /gene="ispF" /locus_tag="STM2929" /note="similar to E. coli orf, hypothetical protein (AAC75788.1); Blastp hit to AAC75788.1 (159 aa), 98% identity in aa 1 - 159" /codon_start=1 /transl_table=11 /product="2C-methyl-d-erythritol-2,4-cyclodiphosphate synthase" /protein_id="NP_461850.1" /db_xref="GeneID:1254452" /translation="MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHAL TDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQA PKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK" misc_feature complement(3070291..3070752) /gene="ispF" /locus_tag="STM2929" /note="YgbB family; Region: YgbB; pfam02542" /db_xref="CDD:460584" regulatory complement(3070282..3070287) /regulatory_class="ribosome_binding_site" /gene="ispF" /locus_tag="STM2929" /note="putative RBS for ygbO; RegulonDB:STMS1H002985" gene complement(3070752..3071474) /gene="ispD" /locus_tag="STM2930" /db_xref="GeneID:1254453" CDS complement(3070752..3071462) /gene="ispD" /locus_tag="STM2930" /note="similar to E. coli orf, hypothetical protein (AAC75789.1); Blastp hit to AAC75789.1 (236 aa), 91% identity in aa 1 - 234" /codon_start=1 /transl_table=11 /product="4-phosphocytidyl-2C-methyl-D-erythritol synthase" /protein_id="NP_461851.1" /db_xref="GeneID:1254453" /translation="MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHA LLAHPRVTRVVIAISPGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWV LVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADL WHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPE DLALAEFYLTRTIHQEKA" misc_feature complement(3070767..3071441) /gene="ispD" /locus_tag="STM2930" /note="D-ribitol-5-phosphate cytidylyltransferase; Region: ispD; PRK00155" /db_xref="CDD:234670" misc_feature complement(order(3070824..3070826,3071139..3071147, 3071199..3071201,3071208..3071219,3071382..3071384, 3071403..3071420,3071424..3071426)) /gene="ispD" /locus_tag="STM2930" /note="substrate binding site [active]" /db_xref="CDD:133009" misc_feature complement(order(3070836..3070841,3070851..3070862, 3070875..3070877,3070884..3070889,3070893..3070898, 3070974..3070991,3071046..3071048,3071052..3071054, 3071076..3071078,3071136..3071138)) /gene="ispD" /locus_tag="STM2930" /note="dimer interface [active]" /db_xref="CDD:133009" regulatory complement(3070761..3070766) /regulatory_class="ribosome_binding_site" /gene="ispF" /locus_tag="STM2929" /note="putative RBS for ispF; RegulonDB:STMS1H002986" regulatory complement(3071469..3071474) /regulatory_class="ribosome_binding_site" /gene="ispD" /locus_tag="STM2930" /note="putative RBS for ispD; RegulonDB:STMS1H002987" gene complement(3071481..3071803) /gene="ygbQ" /locus_tag="STM2931" /db_xref="GeneID:1254454" CDS complement(3071481..3071792) /gene="ygbQ" /locus_tag="STM2931" /note="similar to E. coli orf, hypothetical protein (AAC75790.1); Blastp hit to AAC75790.1 (103 aa), 91% identity in aa 1 - 103" /codon_start=1 /transl_table=11 /product="putative Septum formation initiator" /protein_id="NP_461852.1" /db_xref="GeneID:1254454" /translation="MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNA KLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTH R" misc_feature complement(3071490..3071747) /gene="ygbQ" /locus_tag="STM2931" /note="cell division protein FtsB; Reviewed; Region: ftsB; PRK00888" /db_xref="CDD:179156" regulatory complement(3071798..3071803) /regulatory_class="ribosome_binding_site" /gene="ygbQ" /locus_tag="STM2931" /note="putative RBS for ygbQ; RegulonDB:STMS1H002988" gene complement(3071983..3072349) /gene="ygbE" /locus_tag="STM2932" /db_xref="GeneID:1254455" CDS complement(3071983..3072339) /gene="ygbE" /locus_tag="STM2932" /note="similar to E. coli putative cytochrome oxidase subunit (AAC75791.1); Blastp hit to AAC75791.1 (107 aa), 66% identity in aa 1 - 107" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461853.3" /db_xref="GeneID:1254455" /translation="MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFV SWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTL LAVGALFGALFIWLLG" misc_feature complement(3071986..3072306) /gene="ygbE" /locus_tag="STM2932" /note="Protein of unknown function (DUF3561); Region: DUF3561; pfam12084" /db_xref="CDD:432318" regulatory complement(3072344..3072349) /regulatory_class="ribosome_binding_site" /gene="ygbE" /locus_tag="STM2932" /note="putative RBS for ygbE; RegulonDB:STMS1H002989" gene complement(3072357..3072975) /gene="cysC" /locus_tag="STM2933" /db_xref="GeneID:1254456" CDS complement(3072357..3072962) /gene="cysC" /locus_tag="STM2933" /EC_number="2.7.1.25" /note="similar to E. coli adenosine 5'-phosphosulfate kinase (AAC75792.1); Blastp hit to AAC75792.1 (201 aa), 85% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="adenosine 5'-phosphosulfate kinase" /protein_id="NP_461854.1" /db_xref="GeneID:1254456" /translation="MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTV AGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLI VLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFT GIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS" misc_feature complement(3072360..3072950) /gene="cysC" /locus_tag="STM2933" /note="adenylylsulfate kinase; Provisional; Region: PRK03846" /db_xref="CDD:179661" misc_feature complement(order(3072483..3072488,3072537..3072539, 3072633..3072641,3072708..3072710,3072717..3072719, 3072732..3072734,3072759..3072761,3072834..3072845, 3072849..3072854)) /gene="cysC" /locus_tag="STM2933" /note="ligand-binding site [chemical binding]; other site" /db_xref="CDD:238985" gene complement(3072949..3074399) /gene="cysN" /locus_tag="STM2934" /db_xref="GeneID:1254457" CDS complement(3072949..3074388) /gene="cysN" /locus_tag="STM2934" /EC_number="2.7.7.4" /note="similar to E. coli ATP-sulfurylase (ATP:sulfate adenylyltransferase), subunit 1, probably a GTPase (AAC75793.1); Blastp hit to AAC75793.1 (475 aa), 87% identity in aa 1 - 475" /codon_start=1 /transl_table=11 /product="ATP-sulfurylase, subunit 1" /protein_id="NP_461855.1" /db_xref="GeneID:1254457" /translation="MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLI GRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYF STERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGI KHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSA NMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGE RIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPA RHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNG IGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSA FELELNALVRRHFPHWDARDLLGDKHGAA" misc_feature complement(3072970..3074388) /gene="cysN" /locus_tag="STM2934" /note="sulfate adenylyltransferase subunit 1; Provisional; Region: cysN; PRK05124" /db_xref="CDD:235349" regulatory complement(3072970..3072975) /regulatory_class="ribosome_binding_site" /gene="cysC" /locus_tag="STM2933" /note="putative RBS for cysC; RegulonDB:STMS1H002990" regulatory complement(3074394..3074399) /regulatory_class="ribosome_binding_site" /gene="cysN" /locus_tag="STM2934" /note="putative RBS for cysN; RegulonDB:STMS1H002991" gene complement(3074398..3075386) /gene="cysD" /locus_tag="STM2935" /db_xref="GeneID:1254458" CDS complement(3074398..3075306) /gene="cysD" /locus_tag="STM2935" /EC_number="2.7.7.4" /note="similar to E. coli ATP:sulfurylase (ATP:sulfate adenylyltransferase), subunit 2 (AAC75794.1); Blastp hit to AAC75794.1 (302 aa), 97% identity in aa 1 - 302" /codon_start=1 /transl_table=11 /product="ATP-sulfurylase, subunit 1" /protein_id="NP_461856.1" /db_xref="GeneID:1254458" /translation="MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVML HLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINP FVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDP KNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLE RDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVST TSERQGRMIDRDQAGSMELKKRQGYF" misc_feature complement(3074401..3075306) /gene="cysD" /locus_tag="STM2935" /note="sulfate adenylyltransferase subunit CysD; Region: PRK05253" /db_xref="CDD:235375" regulatory complement(3075312..3075317) /regulatory_class="ribosome_binding_site" /gene="cysD" /locus_tag="STM2935" /note="putative RBS for cysD; RegulonDB:STMS1H002992" regulatory complement(3075362..3075370) /regulatory_class="minus_10_signal" /gene="cysD" /locus_tag="STM2935" /note="putative -10_signal for cysD; RegulonDB:STMLTH004566" regulatory complement(3075378..3075386) /regulatory_class="minus_35_signal" /gene="cysD" /locus_tag="STM2935" /note="putative -35_signal for cysD; RegulonDB:STMLTH004566" gene 3075546..3076603 /gene="iap" /locus_tag="STM2936" /db_xref="GeneID:1254459" regulatory 3075546..3075551 /regulatory_class="ribosome_binding_site" /gene="iap" /locus_tag="STM2936" /note="putative RBS for iap; RegulonDB:STMS1H002993" CDS 3075557..3076603 /gene="iap" /locus_tag="STM2936" /EC_number="3.4.11.-" /note="similar to E. coli alkaline phosphatase isozyme conversion, aminopeptidase (AAC75795.1); Blastp hit to AAC75795.1 (345 aa), 85% identity in aa 1 - 344" /codon_start=1 /transl_table=11 /product="aminopeptidase in alkaline phosphatase isozyme conversion" /protein_id="NP_461857.1" /db_xref="GeneID:1254459" /translation="MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFF PGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIA AHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKD IPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGK NTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSV EATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIM LPLVKELAKAEKTS" misc_feature 3075557..3076594 /gene="iap" /locus_tag="STM2936" /note="alkaline phosphatase isozyme conversion aminopeptidase; Provisional; Region: PRK10199" /db_xref="CDD:182299" gene complement(3078251..3078559) /gene="ygbF" /locus_tag="STM2937" /db_xref="GeneID:1254460" CDS complement(3078251..3078547) /gene="ygbF" /locus_tag="STM2937" /note="similar to E. coli orf, hypothetical protein (AAC75796.1); Blastp hit to AAC75796.1 (116 aa), 84% identity in aa 23 - 116" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461858.1" /db_xref="GeneID:1254460" /translation="MMSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMI WQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ" misc_feature complement(3078254..3078544) /gene="ygbF" /locus_tag="STM2937" /note="putative ssRNA endonuclease; Provisional; Region: PRK11558" /db_xref="CDD:236930" gene complement(3078544..3079477) /locus_tag="STM2938" /db_xref="GeneID:1254461" CDS complement(3078544..3079464) /locus_tag="STM2938" /note="similar to E. coli orf, hypothetical protein (AAC75797.1); Blastp hit to AAC75797.1 (305 aa), 85% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461859.1" /db_xref="GeneID:1254461" /translation="MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHI PVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQ AKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKW HGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYD IADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGE IEPPQPAPDMLPPAIPEPESLGDSGHRGHG" misc_feature complement(3078649..3079449) /locus_tag="STM2938" /note="CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI; Region: cas1_ECOLI; TIGR03638" /db_xref="CDD:274693" regulatory complement(3078554..3078559) /regulatory_class="ribosome_binding_site" /gene="ygbF" /locus_tag="STM2937" /note="putative RBS for ygbF; RegulonDB:STMS1H002994" gene complement(3079461..3080122) /gene="ygcH" /locus_tag="STM2939" /db_xref="GeneID:1254462" CDS complement(3079461..3080111) /gene="ygcH" /locus_tag="STM2939" /note="similar to E. coli orf, hypothetical protein (AAC75798.1); Blastp hit to AAC75798.1 (199 aa), 28% identity in aa 3 - 198" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461860.1" /db_xref="GeneID:1254462" /translation="MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQ FLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKN GKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQ IRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA" misc_feature complement(3079473..3080111) /gene="ygcH" /locus_tag="STM2939" /note="CRISPR/Cas system-associated RAMP superfamily protein Cas6e; Region: Cas6_I-E; cl08497" /db_xref="CDD:447653" regulatory complement(3079472..3079477) /regulatory_class="ribosome_binding_site" /gene="ygcH" /locus_tag="STM2939" /note="putative RBS for STM2938; RegulonDB:STMS1H002995" gene complement(3080093..3080851) /locus_tag="STM2940" /db_xref="GeneID:1254463" CDS complement(3080093..3080839) /locus_tag="STM2940" /note="similar to E. coli orf, hypothetical protein (AAC75799.1); Blastp hit to AAC75799.1 (226 aa), 35% identity in aa 3 - 159" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461861.1" /db_xref="GeneID:1254463" /translation="MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAAL GIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPE LLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPL APQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDM PLSRQQWLFGERSVNQGPWLRKEDACISQE" misc_feature complement(3080288..3080827) /locus_tag="STM2940" /note="CRISPR/Cas system-associated RAMP superfamily protein Cas5; Region: Cas5_I; cl21479" /db_xref="CDD:451262" regulatory complement(3080117..3080122) /regulatory_class="ribosome_binding_site" /gene="ygcH" /locus_tag="STM2939" /note="putative RBS for ygcH; RegulonDB:STMS1H002996" regulatory complement(3080846..3080851) /regulatory_class="ribosome_binding_site" /locus_tag="STM2940" /note="putative RBS for STM2940; RegulonDB:STMS1H002997" gene complement(3080850..3081921) /gene="yghJ" /locus_tag="STM2941" /db_xref="GeneID:1254464" CDS complement(3080850..3081908) /gene="yghJ" /locus_tag="STM2941" /note="similar to E. coli orf, hypothetical protein (AAC75800.1); Blastp hit to AAC75800.1 (363 aa), 29% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461862.1" /db_xref="GeneID:1254464" /translation="MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSL KRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVK EDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVD IAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLG ETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRA YASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASF DVMNQQGSMEDVLDFICA" misc_feature complement(3080853..3081908) /gene="yghJ" /locus_tag="STM2941" /note="CRISPR-Cas system endoribonuclease Cas6e, RAMP superfamily [Defense mechanisms]; Region: Cas6e; COG5934" /db_xref="CDD:444632" regulatory complement(3081916..3081921) /regulatory_class="ribosome_binding_site" /gene="yghJ" /locus_tag="STM2941" /note="putative RBS for yghJ; RegulonDB:STMS1H002998" gene complement(3081922..3082490) /locus_tag="STM2942" /db_xref="GeneID:1254465" CDS complement(3081922..3082482) /locus_tag="STM2942" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_461863.1" /db_xref="GeneID:1254465" /translation="MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGL HSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSK LRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQR PTEFLRIRWALEYYQAGDGDTDNEQD" misc_feature complement(3081928..3082482) /locus_tag="STM2942" /note="CRISPR-Cas system type I-E effector complex small subunit Cse2 [Defense mechanisms]; Region: Cse2gr11; COG5949" /db_xref="CDD:444647" gene complement(3082479..3084035) /locus_tag="STM2943" /db_xref="GeneID:1254466" CDS complement(3082479..3084035) /locus_tag="STM2943" /note="similar to E. coli orf, hypothetical protein (AAC75802.1); Blastp hit to AAC75802.1 (502 aa), 28% identity in aa 2 - 289" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461864.1" /db_xref="GeneID:1254466" /translation="MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADL QGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFM QDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNA PAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDA TVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDE LLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQT EANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDL RKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENG HKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKA AKAKKQEAAE" misc_feature complement(3082536..3084023) /locus_tag="STM2943" /note="CRISPR type I-E/ECOLI-associated protein CasA/Cse1; Region: casA_cse1; TIGR02547" /db_xref="CDD:274192" regulatory complement(3082485..3082490) /regulatory_class="ribosome_binding_site" /locus_tag="STM2942" /note="putative RBS for STM2942; RegulonDB:STMS1H002999" gene complement(3084047..3086721) /gene="ygcB" /locus_tag="STM2944" /db_xref="GeneID:1254467" CDS complement(3084047..3086710) /gene="ygcB" /locus_tag="STM2944" /note="similar to E. coli orf, hypothetical protein (AAC75803.1); Blastp hit to AAC75803.1 (888 aa), 30% identity in aa 7 - 849" /codon_start=1 /transl_table=11 /product="putative helicase" /protein_id="NP_461865.1" /db_xref="GeneID:1254467" /translation="MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIY FIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEK IAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELD HFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGS ASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQ QKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANA MFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQG CAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAW MSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPW LTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDD AIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIAT QVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRIL APEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYG EDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEES VTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQH QDKDFATVIVVTDFAACGYSANEGLIGMMGE" misc_feature complement(3084254..3086704) /gene="ygcB" /locus_tag="STM2944" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" regulatory complement(3086716..3086721) /regulatory_class="ribosome_binding_site" /gene="ygcB" /locus_tag="STM2944" /note="putative RBS for ygcB; RegulonDB:STMS1H003000" gene 3087148..3088108 /gene="sopD" /locus_tag="STM2945" /db_xref="GeneID:1254468" regulatory 3087148..3087153 /regulatory_class="ribosome_binding_site" /gene="sopD" /locus_tag="STM2945" /note="putative RBS for sopD; RegulonDB:STMS1H003001" CDS 3087155..3088108 /gene="sopD" /locus_tag="STM2945" /note="hypothetical 36.1 Kda protein in cysH 3'region (ORF4). (SW:YGCC_SALTY)" /codon_start=1 /transl_table=11 /product="secreted protein in the Sop family; transferred to eukaryotic cells" /protein_id="NP_461866.1" /db_xref="GeneID:1254468" /translation="MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHF RAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIK MDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTW HPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACI NAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQ DYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT" misc_feature 3087155..3088105 /gene="sopD" /locus_tag="STM2945" /note="type III secretion system effector SopD; Region: PRK15379" /db_xref="CDD:185277" gene complement(3088196..3088939) /gene="cysH" /locus_tag="STM2946" /db_xref="GeneID:1254469" CDS complement(3088196..3088930) /gene="cysH" /locus_tag="STM2946" /EC_number="1.8.99.-" /note="phosphoadenosine phosphosulfate reductase; PAPS; (SW:CYSH_SALTY)" /codon_start=1 /transl_table=11 /product="3'-phosphoadenosine 5'-phosphosulfate reductase" /protein_id="NP_461867.1" /db_xref="GeneID:1254469" /translation="MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENL PGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLK VYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQ SGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTT RKWEPGMAEEETRFFGLKRECGLHEG" misc_feature complement(3088199..3088915) /gene="cysH" /locus_tag="STM2946" /note="phosphoadenylyl-sulfate reductase; Region: PRK02090" /db_xref="CDD:234997" regulatory complement(3088934..3088939) /regulatory_class="ribosome_binding_site" /gene="cysH" /locus_tag="STM2946" /note="putative RBS for cysH; RegulonDB:STMS1H003002" gene complement(3089006..3090731) /gene="cysI" /locus_tag="STM2947" /db_xref="GeneID:1254470" CDS complement(3089006..3090718) /gene="cysI" /locus_tag="STM2947" /EC_number="1.8.1.2" /note="sulfite reductase [NADPH] hemoprotein beta-component. (SW:CYSI_SALTY)" /codon_start=1 /transl_table=11 /product="NADPH dependent sulfite reductase, alpha subunit" /protein_id="NP_461868.1" /db_xref="GeneID:1254470" /translation="MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGF KGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKF AADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSN PYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKT TVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGY LPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPI RPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRI TANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERF LPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGN RIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPAR DFWE" misc_feature complement(3089012..3090706) /gene="cysI" /locus_tag="STM2947" /note="NADPH-dependent assimilatory sulfite reductase hemoprotein subunit; Region: PRK13504" /db_xref="CDD:237402" gene complement(3090718..3092582) /gene="cysJ" /locus_tag="STM2948" /db_xref="GeneID:1254471" CDS complement(3090718..3092517) /gene="cysJ" /locus_tag="STM2948" /EC_number="1.8.1.2" /note="sulfite reductase [NADPH] flavoprotein alpha-component. (SW:CYSJ_SALTY)" /codon_start=1 /transl_table=11 /product="sulfite reductase, beta (flavoprotein) subunit" /protein_id="NP_461869.1" /db_xref="GeneID:1254471" /translation="MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVL NPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYK FKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEF FCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSV ATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDAL GVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYAT LTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIAS AQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPAN PETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKE GVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKAL LEVIAEFGGMDLESADEYLSELRVERRYQRDVY" misc_feature complement(3090721..3092517) /gene="cysJ" /locus_tag="STM2948" /note="NADPH-dependent assimilatory sulfite reductase flavoprotein subunit; Region: cysJ; PRK10953" /db_xref="CDD:182862" misc_feature complement(order(3091252..3091263,3091300..3091302, 3091306..3091308,3091351..3091362,3091693..3091695)) /gene="cysJ" /locus_tag="STM2948" /note="FAD binding pocket [chemical binding]; other site" /db_xref="CDD:99796" misc_feature complement(order(3091351..3091356,3091360..3091362)) /gene="cysJ" /locus_tag="STM2948" /note="FAD binding motif [chemical binding]; other site" /db_xref="CDD:99796" misc_feature complement(order(3090721..3090723,3090727..3090729, 3090862..3090864,3091351..3091353)) /gene="cysJ" /locus_tag="STM2948" /note="catalytic residues [active]" /db_xref="CDD:99796" misc_feature complement(order(3090844..3090846,3090931..3090933, 3090937..3090939,3090958..3090963,3091048..3091053, 3091132..3091134,3091138..3091140,3091291..3091302)) /gene="cysJ" /locus_tag="STM2948" /note="NAD binding pocket [chemical binding]; other site" /db_xref="CDD:99796" misc_feature complement(order(3091243..3091245,3091252..3091254, 3091261..3091263)) /gene="cysJ" /locus_tag="STM2948" /note="phosphate binding motif [ion binding]; other site" /db_xref="CDD:99796" misc_feature complement(order(3091120..3091122,3091126..3091137, 3091147..3091149)) /gene="cysJ" /locus_tag="STM2948" /note="beta-alpha-beta structure motif; other site" /db_xref="CDD:99796" regulatory complement(3090726..3090731) /regulatory_class="ribosome_binding_site" /gene="cysI" /locus_tag="STM2947" /note="putative RBS for cysI; RegulonDB:STMS1H003003" regulatory complement(3092529..3092534) /regulatory_class="ribosome_binding_site" /gene="cysJ" /locus_tag="STM2948" /note="putative RBS for cysJ; RegulonDB:STMS1H003004" regulatory complement(3092555..3092563) /regulatory_class="minus_10_signal" /gene="cysJ" /locus_tag="STM2948" /note="putative -10_signal for cysJ; RegulonDB:STMLTH004567" regulatory complement(3092574..3092582) /regulatory_class="minus_35_signal" /gene="cysJ" /locus_tag="STM2948" /note="putative -35_signal for cysJ; RegulonDB:STMLTH004567" protein_bind complement(3092675..3092717) /note="putative binding site for CysB, RegulonDB: STMS1H000127" /bound_moiety="CysB" gene 3092941..3093303 /gene="ptpS" /locus_tag="STM2949" /db_xref="GeneID:1254472" CDS 3092941..3093303 /gene="ptpS" /locus_tag="STM2949" /EC_number="4.2.3.12" /note="similar to E. coli putative 6-pyruvoyl tetrahydrobiopterin synthase (AAC75807.1); Blastp hit to AAC75807.1 (121 aa), 94% identity in aa 2 - 121" /codon_start=1 /transl_table=11 /product="putative synthase" /protein_id="NP_461870.1" /db_xref="GeneID:1254472" /translation="MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEV DPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLL SAVMVKETCTAGCVYRGE" misc_feature 3092944..3093300 /gene="ptpS" /locus_tag="STM2949" /note="Tunnelling fold (T-fold). The five known T-folds are found in five different enzymes with different functions: dihydroneopterin-triphosphate epimerase (DHNTPE), dihydroneopterin aldolase (DHNA), GTP cyclohydrolase I (GTPCH-1), 6-pyrovoyl...; Region: TFold; cl00263" /db_xref="CDD:469697" misc_feature order(3093028..3093030,3093034..3093036,3093265..3093267, 3093283..3093285) /gene="ptpS" /locus_tag="STM2949" /note="active site" /db_xref="CDD:238351" gene complement(3093391..3094196) /locus_tag="STM2950" /db_xref="GeneID:1254473" CDS complement(3093391..3094188) /locus_tag="STM2950" /codon_start=1 /transl_table=11 /product="putative metal-dependent hydrolases of the beta-lactamase superfamily II" /protein_id="NP_461871.1" /db_xref="GeneID:1254473" /translation="MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGP DGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMT FLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAE PDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRSYALVGGFHLRCAS PFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF" misc_feature complement(3093436..3094179) /locus_tag="STM2950" /note="Methanocaldococcus jannaschii dihydropteroate synthase, Thermoanaerobacter tengcongensis Tflp, and related proteins; MBL-fold metallo hydrolase domain; Region: DHPS-like_MBL-fold; cd07713" /db_xref="CDD:293799" misc_feature complement(order(3093463..3093468,3093550..3093552, 3093637..3093639,3093694..3093699,3093967..3093972, 3093976..3093978,3093982..3093984)) /locus_tag="STM2950" /note="active site" /db_xref="CDD:293799" regulatory complement(3094191..3094196) /regulatory_class="ribosome_binding_site" /locus_tag="STM2950" /note="putative RBS for STM2950; RegulonDB:STMS1H003005" gene complement(3096564..3097244) /gene="ygcF" /locus_tag="STM2951" /db_xref="GeneID:1254474" CDS complement(3096564..3097235) /gene="ygcF" /locus_tag="STM2951" /note="similar to E. coli orf, hypothetical protein (AAC75819.1); Blastp hit to AAC75819.1 (223 aa), 95% identity in aa 1 - 223" /codon_start=1 /transl_table=11 /product="putative organic radical activating enzymes" /protein_id="NP_461872.1" /db_xref="GeneID:1254474" /translation="MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTW DKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLM PLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKH PVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHK YLNIA" misc_feature complement(3096567..3097211) /gene="ygcF" /locus_tag="STM2951" /note="putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE; Region: rSAM_QueE_Ecoli; TIGR04322" /db_xref="CDD:275126" regulatory complement(3097239..3097244) /regulatory_class="ribosome_binding_site" /gene="ygcF" /locus_tag="STM2951" /note="putative RBS for ygcF; RegulonDB:STMS1H003006" gene complement(3097371..3098681) /gene="eno" /locus_tag="STM2952" /db_xref="GeneID:1254475" CDS complement(3097371..3098669) /gene="eno" /locus_tag="STM2952" /EC_number="4.2.1.11" /note="similar to E. coli enolase (AAC75821.1); Blastp hit to AAC75821.1 (432 aa), 98% identity in aa 1 - 432" /codon_start=1 /transl_table=11 /product="enolase" /protein_id="NP_461873.1" /db_xref="GeneID:1254475" /translation="MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTG SREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTEN KSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHA DNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGS NAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHF LEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKG IANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQI KTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA" misc_feature complement(3097380..3098669) /gene="eno" /locus_tag="STM2952" /note="Enolase [Carbohydrate transport and metabolism]; Region: Eno; COG0148" /db_xref="CDD:439918" regulatory complement(3098676..3098681) /regulatory_class="ribosome_binding_site" /gene="eno" /locus_tag="STM2952" /note="putative RBS for eno; RegulonDB:STMS1H003007" gene complement(3098752..3100399) /gene="pyrG" /locus_tag="STM2953" /db_xref="GeneID:1254476" CDS complement(3098752..3100389) /gene="pyrG" /locus_tag="STM2953" /EC_number="6.3.4.2" /note="similar to E. coli CTP synthetase (AAC75822.1); Blastp hit to AAC75822.1 (545 aa), 95% identity in aa 1 - 545" /codon_start=1 /transl_table=11 /product="CTP synthetase" /protein_id="NP_461874.1" /db_xref="GeneID:1254476" /translation="MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPY INVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRK ERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQL AVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPA NERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEW EQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVE TRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARN VAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSD DSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPW FVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK" misc_feature complement(3098761..3100383) /gene="pyrG" /locus_tag="STM2953" /note="CTP synthetase; Validated; Region: pyrG; PRK05380" /db_xref="CDD:235437" regulatory complement(3100394..3100399) /regulatory_class="ribosome_binding_site" /gene="pyrG" /locus_tag="STM2953" /note="putative RBS for pyrG; RegulonDB:STMS1H003008" gene complement(3100617..3101417) /gene="mazG" /locus_tag="STM2954" /db_xref="GeneID:1254477" CDS complement(3100617..3101417) /gene="mazG" /locus_tag="STM2954" /note="similar to E. coli orf, hypothetical protein (AAC75823.1); Blastp hit to AAC75823.1 (263 aa), 93% identity in aa 2 - 263" /codon_start=1 /transl_table=11 /product="putative pyrophosphatase" /protein_id="NP_461875.1" /db_xref="GeneID:1254477" /translation="MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETY EVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHV FGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGF DWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELA LQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL" misc_feature complement(3100623..3101417) /gene="mazG" /locus_tag="STM2954" /note="nucleoside triphosphate pyrophosphohydrolase; Reviewed; Region: mazG; PRK09562" /db_xref="CDD:236569" gene complement(3102447..3102808) /locus_tag="STM2955" /db_xref="GeneID:1254478" CDS complement(3102447..3102803) /locus_tag="STM2955" /codon_start=1 /transl_table=11 /product="putative transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain and a metal-binding domain" /protein_id="NP_461876.3" /db_xref="GeneID:1254478" /translation="MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLI ESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKT GMIKPDENGKINAKGQ" misc_feature complement(3102507..3102728) /locus_tag="STM2955" /note="Transcriptional regulator, contains Arc/MetJ-type RHH (ribbon-helix-helix) DNA-binding domain [Transcription]; Region: ParD; COG3609" /db_xref="CDD:442827" regulatory complement(3102803..3102808) /regulatory_class="ribosome_binding_site" /locus_tag="STM2955" /note="putative RBS for STM2955; RegulonDB:STMS1H003009" gene complement(3102887..3105310) /gene="relA" /locus_tag="STM2956" /db_xref="GeneID:1254479" CDS complement(3102887..3105121) /gene="relA" /locus_tag="STM2956" /EC_number="2.7.6.5" /note="similar to E. coli (p)ppGpp synthetase I (GTP pyrophosphokinase); regulation of RNA synthesis; stringent factor (AAC75826.1); Blastp hit to AAC75826.1 (744 aa), 96% identity in aa 1 - 743" /codon_start=1 /transl_table=11 /product="(p)ppGpp synthetase I" /protein_id="NP_461877.1" /db_xref="GeneID:1254479" /translation="MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQ QTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKS IVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHL REVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLL HERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDV RAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTV EIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGE MLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVP FTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAG RQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNK PSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGF ITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRD ITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR LHGG" misc_feature complement(3102893..3105121) /gene="relA" /locus_tag="STM2956" /note="(p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional; Region: relA; PRK10872" /db_xref="CDD:182797" regulatory complement(3105128..3105133) /regulatory_class="ribosome_binding_site" /gene="relA" /locus_tag="STM2956" /note="putative RBS for relA; RegulonDB:STMS1H003010" gene complement(3105173..3106475) /gene="ygcA" /locus_tag="STM2957" /db_xref="GeneID:1254480" CDS complement(3105173..3106468) /gene="ygcA" /locus_tag="STM2957" /EC_number="2.1.1.-" /note="similar to E. coli putative enzyme (AAC75827.1); Blastp hit to AAC75827.1 (433 aa), 84% identity in aa 1 - 432" /codon_start=1 /transl_table=11 /product="putative RNA methyltransferase" /protein_id="NP_461878.1" /db_xref="GeneID:1254480" /translation="MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGL LPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQR SKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQ CPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKL ERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVAR ALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHN VTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPAT LARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM" misc_feature complement(3105179..3106465) /gene="ygcA" /locus_tag="STM2957" /note="23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD; Region: rumA; PRK13168" /db_xref="CDD:237291" regulatory complement(3105285..3105293) /regulatory_class="minus_10_signal" /gene="ygcA" /locus_tag="STM2957" /note="putative -10_signal for relA; RegulonDB:STMLTH004568" regulatory complement(3105302..3105310) /regulatory_class="minus_35_signal" /gene="ygcA" /locus_tag="STM2957" /note="putative -35_signal for relA; RegulonDB:STMLTH004568" regulatory complement(3106470..3106475) /regulatory_class="ribosome_binding_site" /gene="ygcA" /locus_tag="STM2957" /note="putative RBS for ygcA; RegulonDB:STMS1H003011" gene 3106516..3109282 /gene="barA" /locus_tag="STM2958" /db_xref="GeneID:1254481" regulatory 3106516..3106521 /regulatory_class="ribosome_binding_site" /gene="barA" /locus_tag="STM2958" /note="putative RBS for barA; RegulonDB:STMS1H003012" CDS 3106526..3109282 /gene="barA" /locus_tag="STM2958" /EC_number="2.7.3.-" /note="similar to E. coli sensor-regulator, activates OmpR by phophorylation (AAC75828.1); Blastp hit to AAC75828.1 (918 aa), 90% identity in aa 1 - 918" /codon_start=1 /transl_table=11 /product="sensory histidine kinase" /protein_id="NP_461879.1" /db_xref="GeneID:1254481" /translation="MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDA GASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFH LDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYV ALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRR GQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQN VELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTI ERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTL NIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIR DTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNR GSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYS PTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKL KQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKL IGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQ QTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPE PAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGL VDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAK KILG" misc_feature 3106526..3109279 /gene="barA" /locus_tag="STM2958" /note="hybrid sensory histidine kinase BarA; Provisional; Region: PRK11107" /db_xref="CDD:236848" gene complement(3109326..3110474) /locus_tag="STM2959" /db_xref="GeneID:1254482" CDS complement(3109326..3110468) /locus_tag="STM2959" /note="similar to E. coli orf, hypothetical protein (AAC76158.1); Blastp hit to AAC76158.1 (408 aa), 68% identity in aa 28 - 405" /codon_start=1 /transl_table=11 /product="putative glycerate kinase 2" /protein_id="NP_461880.1" /db_xref="GeneID:1254482" /translation="MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADG GEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPA QRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGND IAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEM IERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDAL HLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVH EHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR" misc_feature complement(3109347..3110465) /locus_tag="STM2959" /note="Glycerate kinase [Carbohydrate transport and metabolism]; Region: GlxK; COG1929" /db_xref="CDD:441532" regulatory complement(3110469..3110474) /regulatory_class="ribosome_binding_site" /locus_tag="STM2959" /note="putative RBS for STM2959; RegulonDB:STMS1H003013" gene complement(3110546..3111898) /gene="gudD" /locus_tag="STM2960" /db_xref="GeneID:1254483" CDS complement(3110546..3111886) /gene="gudD" /locus_tag="STM2960" /EC_number="4.2.1.40" /note="similar to E. coli putative glucarate dehydratase (AAC75829.1); Blastp hit to AAC75829.1 (446 aa), 97% identity in aa 1 - 446" /codon_start=1 /transl_table=11 /product="d-glucarate dehydratase" /protein_id="NP_461881.1" /db_xref="GeneID:1254483" /translation="MSTQFTTPVVTEMQVIPVAGHDSMLMNLSGAHAPFFTRNIVIIK DNSGHTGVGEIPGGEKIRKTLEDAIPLVVGKTLGEYKNVLTAVRNQFADRDAGGRGLQ TFDLRTTIHVVTGIEAAMLDLLGQHLGVNVASLLGDGQQRSEVEMLGYLFFVGNRKAT PLPYQSQPDEQCDWYRLRHEEAMTPETVVRLAEAAYEKYGFNDFKLKGGVLAGEEEAE SIVALAKRFPQARVTLDPNGAWSLNEAISIGKYLKGSLAYAEDPCGAEQGFSGREVMA EFRRATGLPTATNMIATDWRQMGHTLSLQSVDIPLADPHFWTMQGSVRVAQMCHEFGL TWGSHSNNHFDISLAMFTHVAAAAPGKITAIDTHWIWQEGNQRLTKEPFEIKGGMVQV PTKPGLGVELDMDQVMKAHELYQKHGLGARDDAMGMQYLIPGWTFDNKRPCMVR" misc_feature complement(3110549..3111874) /gene="gudD" /locus_tag="STM2960" /note="glucarate dehydratase; Region: glucar-dehydr; TIGR03247" /db_xref="CDD:211799" regulatory complement(3111893..3111898) /regulatory_class="ribosome_binding_site" /gene="gudD" /locus_tag="STM2960" /note="putative RBS for gudD; RegulonDB:STMS1H003014" gene complement(3111907..3113260) /gene="ygcY" /locus_tag="STM2961" /db_xref="GeneID:1254484" CDS complement(3111907..3113247) /gene="ygcY" /locus_tag="STM2961" /EC_number="4.2.1.40" /note="similar to E. coli putative glucarate dehydratase (AAC75830.1); Blastp hit to AAC75830.1 (446 aa), 95% identity in aa 1 - 446" /codon_start=1 /transl_table=11 /product="putative d-glucarate dehydratase" /protein_id="NP_461882.1" /db_xref="GeneID:1254484" /translation="MTTQSSPVITDMKVIPVAGHDSMLLNIGGAHNAYFTRNIVILTD NAGHTGVGEAPGGEVIYQTLVDAIPMVLGQEVARLNKVVQQVHKGNQAADFDTFGKGA WTFELRVNAVAALEAALLDLLGQALNVPVCELLGPGKQRDAVTVLGYLFYIGDRTKTD LPYLESTPGSHEWYRLRHQEALDSDAVVRLAEASQDRYGFKDFKLKGGVLPGEQEIDT VRALKKRFPDARITVDPNGAWLLDEAIALCKGLNDVLTYAEDPCGAEQGFSGREVMAE FRRATGLPVATNMIATNWREMGHAVMLNAVDIPLADPHFWTLTGAVRVAQLCDDWGLT WGCHSNNHFDISLAMFTHVGAAAPGKPTAIDTHWIWQEGDCRLTKNPLEIKNGKIAVP DAPGLGVELDWEQVRKAHDAYKKLPGGARNDAGPMQYLIPGWTFDRKRPVFGRH" misc_feature complement(3111913..3113235) /gene="ygcY" /locus_tag="STM2961" /note="glucarate dehydratase; Region: glucar-dehydr; TIGR03247" /db_xref="CDD:211799" gene complement(3113244..3114615) /gene="gudT" /locus_tag="STM2962" /db_xref="GeneID:1254485" CDS complement(3113244..3114602) /gene="gudT" /locus_tag="STM2962" /note="similar to E. coli putative transport protein (AAC75831.1); Blastp hit to AAC75831.1 (450 aa), 96% identity in aa 1 - 450" /codon_start=1 /transl_table=11 /product="putative MFS superfamily D-glucarate permease" /protein_id="NP_461883.1" /db_xref="GeneID:1254485" /translation="MSSLSHAASSAEKRTNARYWIVVMLFIVTSFNYGDRATLSIAGS EMAKDIGLDPVGMGYVFSAFSWAYVIGQIPGGWLLDRFGSKRVYFWSIFIWSVFTLLQ GFVDIFSGFGIIVALFTLRFLVGLAESPSFPGNSRIVAAWFPAQERGTAVAIFNSAQY FATVIFAPIMGWLTHEVGWSHVFFFMGGLGIIISFIWLKVIHEPNNHPGVNKKELEYI AEGGALINMDQKDTKAKVPFSVKWGQIKQLLGSRMMIGVYIGQYCINALTYFFITWFP VYLVQARGMSILKAGFVASVPAVCGFIGGVLGGIISDWLMRRTGSLNIARKTPIVLGM LLSMVMVFCNYVNVEWMIIGFMALAFFGKGIGALGWAVMADTAPKEISGLSGGLFNMF GNISGIVTPIAIGYIVGTTGSFNGALIYVGVHALVAIISYLVLVGDIKRIELKPVAGQ LS" misc_feature complement(3113295..3114524) /gene="gudT" /locus_tag="STM2962" /note="D-galactonate transporter; Region: 2A0114; TIGR00893" /db_xref="CDD:273326" regulatory complement(3113255..3113260) /regulatory_class="ribosome_binding_site" /gene="ygcY" /locus_tag="STM2961" /note="putative RBS for ygcY; RegulonDB:STMS1H003015" regulatory complement(3114610..3114615) /regulatory_class="ribosome_binding_site" /gene="gudT" /locus_tag="STM2962" /note="putative RBS for gudT; RegulonDB:STMS1H003016" gene complement(3115083..3115548) /locus_tag="STM2963" /db_xref="GeneID:1254486" CDS complement(3115083..3115532) /locus_tag="STM2963" /note="similar to E. coli orf, hypothetical protein (AAC75832.1); Blastp hit to AAC75832.1 (149 aa), 88% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="putative MFS superfamily D-glucarate permease" /protein_id="NP_461884.1" /db_xref="GeneID:1254486" /translation="MAEIGIFVGTMYGNSLLVAEEAEAILARQGHSATVFEDPELSDW QQYQDKVALVVTSTTGQGDLPDSIAPLFHGIKDTVGFQPNLRYGVIALGDSSYPNFCN GGKQFDALLQEQSAQRVGEMLFIDASEHPEPESQSNPWVENWGTLLS" misc_feature complement(3115086..3115532) /locus_tag="STM2963" /note="flavodoxin; Provisional; Region: PRK08105" /db_xref="CDD:181230" regulatory complement(3115543..3115548) /regulatory_class="ribosome_binding_site" /locus_tag="STM2963" /note="putative RBS for STM2963; RegulonDB:STMS1H003017" gene complement(3115551..3116333) /gene="yqcB" /locus_tag="STM2964" /db_xref="GeneID:1254487" CDS complement(3115551..3116333) /gene="yqcB" /locus_tag="STM2964" /note="similar to E. coli orf, hypothetical protein (AAC75833.1); Blastp hit to AAC75833.1 (260 aa), 89% identity in aa 1 - 255" /codon_start=1 /transl_table=11 /product="putative synthase" /protein_id="NP_461885.1" /db_xref="GeneID:1254487" /translation="MLEILYQDPWLVAVNKPAGWLVHRSWLDRDEKVVVMQTVRDQIG QHVFTAHRLDRPTSGVLLMGLSSEAGRRLAQQFEQHHIRKRYHAIVRGWLMDDAVLDY PLVEERDKIADKFAREDKAPQPAVTQYRGLATVEMAVPTGRYPTTRYGLVELEPKTGR KHQLRRHLAHLRHPIIGDSKHGDLRQNRSAAEHFACRRLMLHASRLELTHPFTGQPLI IQAGLDETWMQALTQFGWRGLLPDNERVEFTAASRQDETHLT" misc_feature complement(3115563..3116333) /gene="yqcB" /locus_tag="STM2964" /note="tRNA pseudouridine synthase C; Provisional; Region: PRK11112" /db_xref="CDD:182971" misc_feature complement(order(3115839..3115841,3116172..3116183)) /gene="yqcB" /locus_tag="STM2964" /note="probable active site [active]" /db_xref="CDD:211333" gene complement(3116333..3116674) /gene="yqcC" /locus_tag="STM2965" /db_xref="GeneID:1254488" CDS complement(3116333..3116662) /gene="yqcC" /locus_tag="STM2965" /note="similar to E. coli orf, hypothetical protein (AAC75834.1); Blastp hit to AAC75834.1 (109 aa), 80% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461886.1" /db_xref="GeneID:1254488" /translation="MTTHDRVRQQLHTLETLLREHRHWRQDAPQAHLFTSTQPFFMDT MEPLEWLQWVLIPRMHTLLDNAQPLPEAFAVAPYYEMALAADHPQRETILAVLQDLDA LFARDKS" misc_feature complement(3116342..3116662) /gene="yqcC" /locus_tag="STM2965" /note="Uncharacterized conserved protein YqcC, DUF446 family [Function unknown]; Region: YqcC; COG3098" /db_xref="CDD:442332" regulatory complement(3116669..3116674) /regulatory_class="ribosome_binding_site" /gene="yqcC" /locus_tag="STM2965" /note="putative RBS for yqcC; RegulonDB:STMS1H003018" gene complement(3116703..3117057) /gene="csrB" /locus_tag="STM2966" /db_xref="GeneID:1254489" ncRNA complement(3116703..3117057) /ncRNA_class="other" /gene="csrB" /locus_tag="STM2966" /product="regulatory RNA" /db_xref="GeneID:1254489" gene complement(3117274..3117828) /gene="syd" /locus_tag="STM2967" /db_xref="GeneID:1254490" CDS complement(3117274..3117819) /gene="syd" /locus_tag="STM2967" /note="similar to E. coli interacts with secY (AAC75835.1); Blastp hit to AAC75835.1 (181 aa), 83% identity in aa 1 - 181" /codon_start=1 /transl_table=11 /product="interacts with secY" /protein_id="NP_461887.1" /db_xref="GeneID:1254490" /translation="MDELTAQALKAFTTRYCDAWQEKHGSWPLSEELYGVPSPCIISS TRDAVYWQPQPFEGEENVNAVERAFDIMVQPALHAFYTTQFAGDMPAQFADEKLTLLQ TWSQDDFRRVQENLIGHLVTQKRLKLPPTLFIATQENELEVISVCNLSGEVIKETLGT RNRTVLAATLAEFLTQLNPLL" misc_feature complement(3117277..3117807) /gene="syd" /locus_tag="STM2967" /note="SecY interacting protein Syd; Provisional; Region: PRK04968" /db_xref="CDD:235324" regulatory complement(3117823..3117828) /regulatory_class="ribosome_binding_site" /gene="syd" /locus_tag="STM2967" /note="putative RBS for syd; RegulonDB:STMS1H003019" gene 3117868..3118736 /gene="yqcD" /locus_tag="STM2968" /db_xref="GeneID:1254491" regulatory 3117868..3117873 /regulatory_class="ribosome_binding_site" /gene="yqcD" /locus_tag="STM2968" /note="putative RBS for yqcD; RegulonDB:STMS1H003020" CDS 3117888..3118736 /gene="yqcD" /locus_tag="STM2968" /note="similar to E. coli orf, hypothetical protein (AAC75836.1); Blastp hit to AAC75836.1 (282 aa), 87% identity in aa 1 - 282" /codon_start=1 /transl_table=11 /product="putative GTP cyclohydrolase I" /protein_id="NP_461888.1" /db_xref="GeneID:1254491" /translation="MSSYENHQALDGLTLGKSTDYRDNYDVSLLQGVPRSLNRDPLGL TADNLPFHGADIWTLYELSWLNSQGLPQVAVGHVELDYTSVNLIESKSFKLYLNSFNQ TRFDTWETVRQTLERDLRACAQGNVSVRLHRLDELEGQPVAHFHGTCIDDQDISIDNY QFTTDYLQHAVSGEKQVEETLVSHLLKSNCLITHQPDWGSIQIQYRGRKIDREKLLRY LVSFRHHNEFHEQCVERIFNDILRFCQPETLSVYARYTRRGGLDINPWRSNTDFVPAT GRLARQ" misc_feature 3117912..3118733 /gene="yqcD" /locus_tag="STM2968" /note="7-cyano-7-deazaguanine reductase; Provisional; Region: queF; PRK11792" /db_xref="CDD:236986" gene 3118838..3120213 /gene="ygdH" /locus_tag="STM2969" /db_xref="GeneID:1254492" regulatory 3118838..3118843 /regulatory_class="ribosome_binding_site" /gene="ygdH" /locus_tag="STM2969" /note="putative RBS for ygdH; RegulonDB:STMS1H003021" CDS 3118849..3120213 /gene="ygdH" /locus_tag="STM2969" /note="similar to E. coli orf, hypothetical protein (AAC75837.1); Blastp hit to AAC75837.1 (454 aa), 94% identity in aa 1 - 453" /codon_start=1 /transl_table=11 /product="putative nucleotide binding" /protein_id="NP_461889.1" /db_xref="GeneID:1254492" /translation="MITHISPLGSMDMLSQLEVDMLKRTASSDLYQLFRNCSLAVLNS GSLTDNSKELLSRFENFDINVLRRERGVKLELINPPEDAFVDGRIIRALQANLFAVLR DILFVNGQIHNAGRFQHLDLESSTHITNLVFSILRNARALHVGEAPNMVVCWGGHSIN ENEYLYARRVGTQLGLRELNICTGCGPGAMEAPMKGAAVGHAQQRYKDSRFIGMTEPS IIAAEPPNPLVNELIIMPDIEKRLEAFVRIAHGIIIFPGGVGTAEELLYLLGILMNPA NKNQVLPLILTGPKESADYFRVLDEFITHTLGEAARRHYRIIIDDAAEVARLMKKAMP QVKENRRDTGDAYSFNWSMRIAPDLQVPFEPSHENMANLKLYPDQPVEILAADLRRAF SGIVAGNVKEVGIRAIEANGPYKIHGDREMMRRMDDLLQGFVAQHRMKLPGSAYIPCY EICA" misc_feature 3118852..3120204 /gene="ygdH" /locus_tag="STM2969" /note="nucleotide 5'-monophosphate nucleosidase PpnN; Region: Nsidase_PpnN; NF038390" /db_xref="CDD:468501" gene 3120766..3122067 /gene="sdaC" /locus_tag="STM2970" /db_xref="GeneID:1254493" regulatory 3120766..3120771 /regulatory_class="ribosome_binding_site" /gene="sdaC" /locus_tag="STM2970" /note="putative RBS for sdaC; RegulonDB:STMS1H003022" CDS 3120778..3122067 /gene="sdaC" /locus_tag="STM2970" /note="similar to E. coli probable serine transporter (AAC75838.1); Blastp hit to AAC75838.1 (429 aa), 95% identity in aa 1 - 429" /codon_start=1 /transl_table=11 /product="putative HAAAP family serine transport protein" /protein_id="NP_461890.1" /db_xref="GeneID:1254493" /translation="METTQTSTIASIDSRSAWRKTDTMWMLGLYGTAIGAGVLFLPIN AGVGGMIPLIIMAILAFPMTFFAHRGLTRFVLSGKNPGEDITEVVEEHFGIGAGKLIT LLYFFAIYPILLVYSVAITNTVESFLTHQLAINPPPRAILSLILIVGMMTIVRFGEQM IVKAMSILVFPFVAALMLLALYLIPQWNGAALETLSFDSAASTGNGLWMTLWLAIPVM VFSFNHSPIISSFAVAKREEYGEGAEKKCSKILAFAHIMMVLTVMFFVFSCVLSLTPA DLAAAKEQNISILSYLANHFNAPIIAWMAPIIAMIAITKSFLGHYLGAREGFNGMVIK SLRGKGKSIEINKLNKITALFMLVTTWIVATLNPSILGMIETLGGPIIAMILFLMPMY AIQKVPAMRKYSGHISNVFVVIMGLIAISAIFYSLFS" misc_feature 3120829..3122031 /gene="sdaC" /locus_tag="STM2970" /note="serine transporter; Region: stp; TIGR00814" /db_xref="CDD:273283" gene 3122115..3123493 /gene="sdaB" /locus_tag="STM2971" /db_xref="GeneID:1254494" regulatory 3122115..3122120 /regulatory_class="ribosome_binding_site" /gene="sdaB" /locus_tag="STM2971" /note="putative RBS for sdaB; RegulonDB:STMS1H003023" CDS 3122126..3123493 /gene="sdaB" /locus_tag="STM2971" /EC_number="4.3.1.17" /note="similar to E. coli L-serine dehydratase (deaminase), L-SD2 (AAC75839.1); Blastp hit to AAC75839.1 (455 aa), 94% identity in aa 1 - 455; L-threonine deaminase 2" /codon_start=1 /transl_table=11 /product="L-serine dehydratase" /protein_id="NP_461891.2" /db_xref="GeneID:1254494" /translation="MISVFDIFKIGIGPSSSHTVGPMKAGKQFTDDLIARHILTDVTR VVVDVYGSLSLTGKGHHTDIAIIMGLAGNLPDTVDIDAIPSFIQDVNTHGRLLLANGQ HEVEFPVDKCMNFHADNLSLHENGMRITALAGDKVLYSQTYYSIGGGFIVDEEHFGLT NSEPVNVPYPYKTAADLQRHCQETGLSLSGLMMQNELALHSKEALEQHFARVWEVMRS GIERGITTEGVLPGKLRVPRRAAALRRMLVSQDKTTTDPMAVVDWINMFALAVNEENA AGGRVVTAPTNGACGIVPAVLAYYDKFIREVNANSLARYMLVASAIGSLYKMNASISG AEVGCQGEVGVACSMAAAGLAELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQVPC IERNAIASVKAVNAARMALRRTSEPRVCLDKVIETMYETGKDMNAKYRETSRGGLAMK IVTCD" misc_feature 3122126..3123481 /gene="sdaB" /locus_tag="STM2971" /note="Serine dehydratase alpha chain; Region: SDH_alpha; cl27283" /db_xref="CDD:452735" gene 3123584..3124419 /gene="exo" /locus_tag="STM2972" /db_xref="GeneID:1254495" regulatory 3123584..3123589 /regulatory_class="ribosome_binding_site" /gene="exo" /locus_tag="STM2972" /note="putative RBS for exo; RegulonDB:STMS1H003024" CDS 3123604..3124419 /gene="exo" /locus_tag="STM2972" /EC_number="3.1.11.-" /note="similar to E. coli 5'-3' exonuclease (AAC75840.1); Blastp hit to AAC75840.1 (281 aa), 87% identity in aa 18 - 281" /codon_start=1 /transl_table=11 /product="exonuclease IX, 5'-3' exonuclease" /protein_id="NP_461892.3" /db_xref="GeneID:1254495" /translation="MLASPRRECYPTRRFVRENTVAAHLLIVDALNLIRRIHAVQGSP CVETCQHALDQLIIHSQPTHAVAVFDDDARSSGWRHQRLPDYKAGRPPMPDDLHNEMP ALRAAFEQRGVRCWASDGNEADDLAATLALKVTEAGHQATIVSTDKGYCQLLSPGLRI RDYFQKRWLDAPFIEKEFGVLPRQLPDYWGLAGISSSKVPGVAGIGPKSATQLLIQFQ NLEGIYAHLDEVPEKWRKKLETHKEMAFLCRDIARLQTDLHIDGNLQQLRLAR" misc_feature 3123664..3124416 /gene="exo" /locus_tag="STM2972" /note="flap endonuclease-like protein; Provisional; Region: PRK09482" /db_xref="CDD:181896" gene complement(3124511..3125672) /gene="fucO" /locus_tag="STM2973" /db_xref="GeneID:1254496" CDS complement(3124511..3125659) /gene="fucO" /locus_tag="STM2973" /EC_number="1.1.1.77" /note="similar to E. coli L-1,2-propanediol oxidoreductase (AAC75841.1); Blastp hit to AAC75841.1 (383 aa), 91% identity in aa 2 - 383" /codon_start=1 /transl_table=11 /product="L-1,2-propanediol oxidoreductase" /protein_id="NP_461893.1" /db_xref="GeneID:1254496" /translation="MANRMILNETAWFGRGAVDALTDEVTRRGYHKALIVTDKTLVQC GVVDKVTSRMDAAGLAWEIYAGVIPNPTISVVQEGLKVFTQSGADYLIAIGGGSPQDT CKAIGIISNNPEFADVRSLEGLSPTRKPSVPIMAIPTTAGTAAEVTINYVITDEEKRR KFVCVDPHDIPQAAFIDADMMDGMPPALKAATGVDALTHAIEGYITRAAWALTDALHI KAIEIIAGALRGAVAGEKEAGEAMALGQYVAGMGFSNVGLGLVHGMAHPLGAFYNTPH GVANAILLPHVMRFNAGSTNEKFRDIARAMGVKVEGLSLEEARNAAVEAVFTLNRDVG IPLHLRDVGVRKEDIPALAQAAFDDVCTGGNPREASLADIVELYHTAW" misc_feature complement(3124514..3125659) /gene="fucO" /locus_tag="STM2973" /note="L-1,2-propanediol oxidoreductase; Provisional; Region: PRK10624" /db_xref="CDD:182595" misc_feature complement(order(3124928..3124930,3125015..3125017, 3125144..3125146,3125621..3125635)) /gene="fucO" /locus_tag="STM2973" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:341455" misc_feature complement(order(3124832..3124834,3124874..3124876, 3125063..3125065,3125075..3125077,3125096..3125098, 3125120..3125122,3125177..3125179,3125204..3125206, 3125231..3125233,3125240..3125245,3125366..3125374, 3125546..3125548)) /gene="fucO" /locus_tag="STM2973" /note="active site" /db_xref="CDD:341455" misc_feature complement(order(3124832..3124834,3124874..3124876, 3125063..3125065,3125075..3125077)) /gene="fucO" /locus_tag="STM2973" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:341455" regulatory complement(3125667..3125672) /regulatory_class="ribosome_binding_site" /gene="fucO" /locus_tag="STM2973" /note="putative RBS for fucO; RegulonDB:STMS1H003025" gene complement(3125676..3126333) /gene="fucA" /locus_tag="STM2974" /db_xref="GeneID:1254497" CDS complement(3125676..3126323) /gene="fucA" /locus_tag="STM2974" /EC_number="4.1.2.17" /note="similar to E. coli L-fuculose-1-phosphate aldolase (AAC75842.1); Blastp hit to AAC75842.1 (215 aa), 91% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="L-fuculose-1-phosphate aldolase" /protein_id="NP_461894.1" /db_xref="GeneID:1254497" /translation="MERNRLARQIIDTCLEMTRLGLNQGTAGNVSVRYQGGLLITPTG IPYEKLTESHIVFIDADGQHEQGKLPSSEWRFHMAAYQTRPDANAVVHNHAVHCTAVS ILNRPIPAIHYMIAAAGGNSIPCAPYATFGTRELSDHVAVALKNRKATLLQHHGLIAC EENLDKALWLAHEVEVLAQLYLSTLAIVDPVPVLDDEAIAIVLEKFKTYGLRIEE" misc_feature complement(3125679..3126323) /gene="fucA" /locus_tag="STM2974" /note="L-fuculose-phosphate aldolase; Region: PRK08087" /db_xref="CDD:181226" misc_feature complement(order(3125715..3125717,3125775..3125777, 3125796..3125798,3125808..3125810,3125829..3125831, 3125862..3125864,3125940..3125942,3125982..3125987, 3125991..3125993,3126012..3126020,3126033..3126038, 3126042..3126044,3126177..3126182,3126186..3126188, 3126252..3126254,3126276..3126278,3126288..3126290)) /gene="fucA" /locus_tag="STM2974" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238232" misc_feature complement(order(3125859..3125861,3126042..3126044, 3126048..3126050,3126105..3126113,3126192..3126197, 3126237..3126239)) /gene="fucA" /locus_tag="STM2974" /note="active site" /db_xref="CDD:238232" misc_feature complement(order(3125859..3125861,3126042..3126044, 3126048..3126050)) /gene="fucA" /locus_tag="STM2974" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238232" regulatory complement(3126328..3126333) /regulatory_class="ribosome_binding_site" /gene="fucA" /locus_tag="STM2974" /note="putative RBS for fucA; RegulonDB:STMS1H003026" regulatory 3126682..3126690 /regulatory_class="minus_35_signal" /note="putative -35_signal for fucP; RegulonDB:STMLTH004569" regulatory 3126706..3126714 /regulatory_class="minus_10_signal" /note="putative -10_signal for fucP; RegulonDB:STMLTH004569" gene 3126878..3128194 /gene="fucP" /locus_tag="STM2975" /note="pseudogene; frameshift; fucose permease" /pseudo /db_xref="GeneID:1254498" gene 3128214..3130001 /gene="fucI" /locus_tag="STM2976" /db_xref="GeneID:1254499" regulatory 3128214..3128219 /regulatory_class="ribosome_binding_site" /gene="fucI" /locus_tag="STM2976" /note="putative RBS for fucI; RegulonDB:STMS1H003028" CDS 3128226..3130001 /gene="fucI" /locus_tag="STM2976" /EC_number="5.3.1.-" /note="similar to E. coli L-fucose isomerase (AAC75844.1); Blastp hit to AAC75844.1 (591 aa), 93% identity in aa 1 - 591" /codon_start=1 /transl_table=11 /product="L-fucose isomerase" /protein_id="NP_461895.1" /db_xref="GeneID:1254499" /translation="MKKISLPKIGIRPVIDGRRMGVRESLEEQTMNMAKATAALITEK IRHACGAQVECVIADTCIAGMAESAACEEKFSSQNVGVTITVTPCWCYGSETIDMDPM RPKAIWGFNGTERPGAVYLAAALAAHSQKGIPAFSIYGHDVQDADDTSIPADVEEKLL RFARAGLAVASMKGKSYLSVGGVSMGIAGSIVDHNFFESWLGMKVQAVDMTELRRRID QKIYDEAELEMALAWADKNFRYGEDQNASQYKRNEAQNRAVLKESLLMAMCIRDMMQG NKTLADKGLVEESLGYNAIAAGFQGQRHWTDQYPNGDTAEALLNSSFDWNGVREPFVV ATENDSLNGVAMLFGHQLTGTAQIFADVRTYWSPEAVERVTGQALSGLAEHGIIHLIN SGSAALDGACKQRDSEGKPTMKPHWEISQQEADACLAATEWCPAIHEYFRGGGYSSRF LTEGGVPFTMTRVNIIKGLGPVLQIAEGWSVELPKAMHDQLDARTNSTWPTTWFAPRL TGKGPFTDVYSVMANWGANHGVLTIGHVGADFITLAAMLRIPVCMHNVEEAKIYRPSA WAAHGMDIEGQDYRACQNYGPLYKR" misc_feature 3128232..3129995 /gene="fucI" /locus_tag="STM2976" /note="L-fucose isomerase; Provisional; Region: fucI; PRK10991" /db_xref="CDD:182885" gene 3130090..3131520 /gene="fucK" /locus_tag="STM2977" /db_xref="GeneID:1254500" regulatory 3130090..3130095 /regulatory_class="ribosome_binding_site" /gene="fucK" /locus_tag="STM2977" /note="putative RBS for fucK; RegulonDB:STMS1H003029" CDS 3130102..3131520 /gene="fucK" /locus_tag="STM2977" /EC_number="2.7.1.51" /note="similar to E. coli L-fuculokinase (AAC75845.1); Blastp hit to AAC75845.1 (482 aa), 84% identity in aa 11 - 482" /codon_start=1 /transl_table=11 /product="L-fuculokinase" /protein_id="NP_461896.1" /db_xref="GeneID:1254500" /translation="MKQDVILVLDCGATNVRAIAVDRQGKIVARASTANASDIAAENS AWHQWSLDAILQRFADCCRSLSSALSECVVRGITVTTFGVDGALVDAQGKLLYPVISW KCPRTAAVMETIERFISPRQLQTLSGVGAFSFNTLYKLVWLKENHPRLLEQAHCWLFI SSLINHRLTGEFTTDITMAGTSQLLDIHQRDFSPEILQATGLARRLFPRIVEAGAPIG TLQTDAARLLGLPAGVPVISAGHDTQFALFGAGAQQGEPVLSSGTWEILMVRSGQVDT SLLSQYPGSTCELDSQSGLYNPGMQWLASGVLEWVRKLLWTPETPWQTLIDEARAIPA GAEGVRMQCDLLACQNAGWQGVTLNTTRGHFYRAALEGLTAQLQRNLRTLEKIGHFNA TELLLVGGGSRNALWNQIKANQLDIPIKVLDDAETTVAGAAMFGWYGVGEFSSPEQAR AQVNYQYRYFWPQTEPEIIEGV" misc_feature 3130108..3131517 /gene="fucK" /locus_tag="STM2977" /note="L-fuculokinase; Provisional; Region: PRK10331" /db_xref="CDD:182383" gene 3131509..3131944 /gene="fucU" /locus_tag="STM2978" /db_xref="GeneID:1254501" regulatory 3131509..3131514 /regulatory_class="ribosome_binding_site" /gene="fucU" /locus_tag="STM2978" /note="putative RBS for fucU; RegulonDB:STMS1H003030" CDS 3131522..3131944 /gene="fucU" /locus_tag="STM2978" /note="similar to E. coli protein of fucose operon (AAC75846.1); Blastp hit to AAC75846.1 (140 aa), 91% identity in aa 1 - 140" /codon_start=1 /transl_table=11 /product="conserved protein of fucose operon" /protein_id="NP_461897.1" /db_xref="GeneID:1254501" /translation="MLKTISPLISPTLLKVLAEMGHGDEIIFSDAHFPAHSLGPQVIR ADGLSVSDLLRAIIPLFELDSYAPPLVMMAAVEGDTLDPNVEARYRDALSLEAPCPDI VRIDRYAFYERAQKAFAIVITGECAKYGNILLKKGVTP" misc_feature 3131522..3131941 /gene="fucU" /locus_tag="STM2978" /note="L-fucose mutarotase; Provisional; Region: fucU; PRK15420" /db_xref="CDD:185318" gene 3131988..3132712 /gene="fucR" /locus_tag="STM2979" /db_xref="GeneID:1254502" regulatory 3131988..3131993 /regulatory_class="ribosome_binding_site" /gene="fucR" /locus_tag="STM2979" /note="putative RBS for fucR; RegulonDB:STMS1H003031" CDS 3132002..3132712 /gene="fucR" /locus_tag="STM2979" /note="DeoR family; similar to E. coli positive regulator of the fuc operon (AAC75847.1); Blastp hit to AAC75847.1 (243 aa), 88% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="positive regulator of the fuc operon" /protein_id="NP_461898.1" /db_xref="GeneID:1254502" /translation="MKAARQQAIVDLLINHKSLTTEALATRLNVSKETIRRDLSELQT QGKVLRNHGRAKYIHRENQDSGDPFHIRLKSHYAHKADIAREALAWIEEGMTIALDAS STCWYLARQLPDIPIQVFTNSHPICQELGKRERIALISSGGQLERKYGCYVNPSLISQ LKSLDIDLFIFSCEGIDGGGDLWDSNAINADFKSILLRRASQSLLLIDKSKFNRSGEA RIGHLDDVTHIVSDAPQS" misc_feature 3132002..3132709 /gene="fucR" /locus_tag="STM2979" /note="L-fucose operon activator; Region: PRK10411" /db_xref="CDD:236684" gene complement(3132771..3133884) /gene="ygdE" /locus_tag="STM2980" /db_xref="GeneID:1254503" CDS complement(3132771..3133871) /gene="ygdE" /locus_tag="STM2980" /note="similar to E. coli orf, hypothetical protein (AAC75848.1); Blastp hit to AAC75848.1 (366 aa), 94% identity in aa 1 - 366" /codon_start=1 /transl_table=11 /product="putative SAM-dependent methyltransferase" /protein_id="NP_461899.1" /db_xref="GeneID:1254503" /translation="MNKVVLLCRPGFEKECAAEITDKAGKREIFGFARVKENAGYVIY ECYQPEDGEKLISELPFSSLIFARQWFVVGELLQHLPPEDRITPIVGMLQGVVEKGGE LRVEVADTNESKELMKFCRKFTVPLRAALRDAGVLTNYETPKRPVVHVFFIAPGCCYT GYSFAHNNSPFYMGIPRLKFPSDAPSRSTLKLEEALHVFIPEDEWDERLANGMYAVDL GACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFRYRPNRNNISWMVC DMVEKPAKVTALMAQWLVNGWCRETIFNLKLPMKKRYEEVSHNLAYLQAQLDEHGVNA QIQARQLYHDREEVTVHVRRLWAAVGGRRDER" misc_feature complement(3132801..3133871) /gene="ygdE" /locus_tag="STM2980" /note="putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional; Region: PRK11760" /db_xref="CDD:236971" gene complement(3133864..3134271) /gene="ygdD" /locus_tag="STM2981" /db_xref="GeneID:1254504" CDS complement(3133864..3134259) /gene="ygdD" /locus_tag="STM2981" /note="similar to E. coli orf, hypothetical protein (AAC75849.1); Blastp hit to AAC75849.1 (131 aa), 90% identity in aa 1 - 131" /codon_start=1 /transl_table=11 /product="putative small membrane protein" /protein_id="NP_461900.1" /db_xref="GeneID:1254504" /translation="MTSRFMLIVAAISGFIYVALGAFGAHVLSKTLGVVEMGWIQTGL QYQAFHTLAIFGLAVAMQRRISIWFYWSSVFLALGTVLFSGSLYCLALSHLRLWAYIT PVGGVSFLVGWALLLIGAIRMKRKGASHE" misc_feature complement(3133867..3134259) /gene="ygdD" /locus_tag="STM2981" /note="hypothetical protein; Provisional; Region: PRK10873" /db_xref="CDD:182798" regulatory complement(3133879..3133884) /regulatory_class="ribosome_binding_site" /gene="ygdD" /locus_tag="STM2981" /note="putative RBS for ygdE; RegulonDB:STMS1H003032" regulatory complement(3134266..3134271) /regulatory_class="ribosome_binding_site" /gene="ygdD" /locus_tag="STM2981" /note="putative RBS for ygdD; RegulonDB:STMS1H003033" gene complement(3134278..3135307) /gene="gcvA" /locus_tag="STM2982" /db_xref="GeneID:1254505" CDS complement(3134278..3135195) /gene="gcvA" /locus_tag="STM2982" /note="LysR family; similar to E. coli positive regulator of gcv operon (AAC75850.1); Blastp hit to AAC75850.1 (305 aa), 98% identity in aa 1 - 305" /codon_start=1 /transl_table=11 /product="regulator of gcv operon" /protein_id="NP_461901.1" /db_xref="GeneID:1254505" /translation="MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSL EDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLPP SFAIQWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKL YAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQAYTRQLGLNHINVQQGP IFSHSAMVLQAAIHGQGIALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQA ELGKIAAFRQWILAKAATEQEKFRFRYEQ" misc_feature complement(3134305..3135195) /gene="gcvA" /locus_tag="STM2982" /note="DNA-binding transcriptional activator GcvA; Provisional; Region: PRK11139" /db_xref="CDD:182990" regulatory complement(3135196..3135201) /regulatory_class="ribosome_binding_site" /gene="gcvA" /locus_tag="STM2982" /note="putative RBS for gcvA; RegulonDB:STMS1H003034" protein_bind complement(3135264..3135294) /gene="gcvA" /locus_tag="STM2982" /note="putative binding site for GcvA, RegulonDB: STMS1H000198" /bound_moiety="GcvA" regulatory complement(3135280..3135288) /regulatory_class="minus_10_signal" /gene="gcvA" /locus_tag="STM2982" /note="putative -10_signal for gcvA; RegulonDB:STMLTH004570" regulatory complement(3135299..3135307) /regulatory_class="minus_35_signal" /gene="gcvA" /locus_tag="STM2982" /note="putative -35_signal for gcvA; RegulonDB:STMLTH004570" gene complement(3135542..3135781) /gene="ygdI" /locus_tag="STM2983" /db_xref="GeneID:1254506" CDS complement(3135542..3135769) /gene="ygdI" /locus_tag="STM2983" /note="similar to E. coli orf, hypothetical protein (AAC75851.1); Blastp hit to AAC75851.1 (76 aa), 93% identity in aa 2 - 75" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_461902.1" /db_xref="GeneID:1254506" /translation="MKKTAAIISACMLTFALSACSGPNYVMHTNDGRSIVTDGKPQTD NDTGMISYKDANGNKQQINRTDVKEMVALEN" misc_feature complement(3135551..3135766) /gene="ygdI" /locus_tag="STM2983" /note="Bacterial protein of unknown function (DUF903); Region: DUF903; cl05512" /db_xref="CDD:471259" regulatory complement(3135776..3135781) /regulatory_class="ribosome_binding_site" /gene="ygdI" /locus_tag="STM2983" /note="putative RBS for ygdI; RegulonDB:STMS1H003035" gene 3135952..3137167 /gene="csdA" /locus_tag="STM2984" /db_xref="GeneID:1254507" regulatory 3135952..3135957 /regulatory_class="ribosome_binding_site" /gene="csdA" /locus_tag="STM2984" /note="putative RBS for csdA; RegulonDB:STMS1H003036" CDS 3135962..3137167 /gene="csdA" /locus_tag="STM2984" /note="similar to E. coli orf, hypothetical protein (AAC75852.1); Blastp hit to AAC75852.1 (401 aa), 89% identity in aa 1 - 401" /codon_start=1 /transl_table=11 /product="putative selenocysteine lyase" /protein_id="NP_461903.1" /db_xref="GeneID:1254507" /translation="MNAFNPTQFRAQFPALADAGVYLDSAATALKPQAVIDATHQFYC LSAGNVHRSQFAQAQRLTAQYEAARAKAARLLNAPDEKSIVWTRGTTEAINMVAQCYA RPRLRPGDEIIVSVAEHHANLVPWLMVAQQTGAQVIKLPLNDRRLPDVERLPELITSR SRILALGQMSNVTGGCPDLASAISAAHAAGMVVMVDGAQGAVHFPADVQQLDIDFYAF SAHKLYGPTGIGVLYGKPELLEAMSPWLGGGKMIRDVSFEGFTTQSAPWKLEAGTPNV AGVIGLSAALEWLSDIDIEQAENWSRGLATLAEDALAKRPGFRSFRCQDSSLLAFDFV GVHHGDMVTLLAEYGIALRAGQHCAQPLLAELGVTGTLRASFAPYNTQHDVDALVNAV DRALELLVD" misc_feature 3135962..3137164 /gene="csdA" /locus_tag="STM2984" /note="cysteine desulfurase CsdA; Region: PRK10874" /db_xref="CDD:182799" misc_feature order(3136229..3136234,3136241..3136243,3136316..3136318, 3136547..3136549,3136553..3136558,3136616..3136618, 3136622..3136627) /gene="csdA" /locus_tag="STM2984" /note="pyridoxal 5'-phosphate binding pocket [chemical binding]; other site" /db_xref="CDD:99746" misc_feature 3136625..3136627 /gene="csdA" /locus_tag="STM2984" /note="catalytic residue [active]" /db_xref="CDD:99746" gene 3137147..3137610 /gene="ygdK" /locus_tag="STM2985" /db_xref="GeneID:1254508" regulatory 3137147..3137152 /regulatory_class="ribosome_binding_site" /gene="ygdK" /locus_tag="STM2985" /note="putative RBS for ygdK; RegulonDB:STMS1H003037" CDS 3137167..3137610 /gene="ygdK" /locus_tag="STM2985" /note="similar to E. coli orf, hypothetical protein (AAC75853.1); Blastp hit to AAC75853.1 (147 aa), 88% identity in aa 1 - 144" /codon_start=1 /transl_table=11 /product="putative SufE protein probably involved in Fe-S center assembly" /protein_id="NP_461904.1" /db_xref="GeneID:1254508" /translation="MTNPLYTGHPFGTTVTEETLRAIFLPLTQWEDKYRQLILLGKQL PALPDECKAQAKEIAGCENRVWLGFTRSDNGTMHFFGDSEGRIVRGLLAVLLTAVEGK NAAELQARSPLALFDELGLRAQLSASRSQGLNALSEAIVAATHKG" misc_feature 3137167..3137607 /gene="ygdK" /locus_tag="STM2985" /note="cysteine desulfurase sulfur acceptor subunit CsdE; Region: PRK15019" /db_xref="CDD:184980" gene 3137905..3138797 /locus_tag="STM2986" /db_xref="GeneID:1254509" regulatory 3137905..3137910 /regulatory_class="ribosome_binding_site" /locus_tag="STM2986" /note="putative RBS for STM2986; RegulonDB:STMS1H003038" CDS 3137910..3138797 /locus_tag="STM2986" /note="similar to E. coli orf, hypothetical protein (AAC76822.1); Blastp hit to AAC76822.1 (300 aa), 31% identity in aa 25 - 294" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_461905.3" /db_xref="GeneID:1254509" /translation="MFVVLAFILWGLTPLYYQYLSGGNLAQILIYRVFWSIPLLLAVR LLFRQRTRFHDAWKDKKSFFFCMIAGLLMIVSWSSFIYALTHHLVLDASLGYFINPLF VIALGCIFLKEKLSLFQAIAVFSGVCGLTFQIIMLRHFPALALTMGLSFALYGLARKF IHYDVMTSITIETLWALPVSLLIFLFSDTGPIISANTPFFLYVMTAPVTIIPLVLFAI ALNHTSLIVTGLAQYIEPSLQFLLAIMIFGEHINYAELLCFCAVWFGLFLCISENLYS HYLRARLKPVFGRVQRFFR" misc_feature 3137910..3138761 /locus_tag="STM2986" /note="Membrane protein RarD, contains two EamA domains, drug/metabolite transporter family [General function prediction only]; Region: RarD; COG2962" /db_xref="CDD:442202" gene complement(3138849..3139663) /gene="ygdL" /locus_tag="STM2987" /db_xref="GeneID:1254510" CDS complement(3138849..3139655) /gene="ygdL" /locus_tag="STM2987" /note="similar to E. coli putative enzyme (AAC75854.1); Blastp hit to AAC75854.1 (268 aa), 93% identity in aa 1 - 267" /codon_start=1 /transl_table=11 /product="putative enzyme" /protein_id="NP_461906.1" /db_xref="GeneID:1254510" /translation="MSVVISDAWRQRFGGTARLYGEKALQRFAEAHICVVGIGGVGSW AAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRV TVIDDFITPDNVAGYMNAGFTYVIDAIDSVRPKAALIAYCRRYKVPLVTTGGAGGQID PTQIQVADLAKTIQDPLAAKLRERLKHNFGVVKNSKGKLGVDCVFSTEALVYPQADGS VCAMKATAEGPKRMDCASGFGAATMVTATFGFVAVSHALKKIMAKAARQE" misc_feature complement(3138855..3139655) /gene="ygdL" /locus_tag="STM2987" /note="sulfur acceptor protein CsdL; Provisional; Region: PRK15116" /db_xref="CDD:185071" regulatory complement(3139658..3139663) /regulatory_class="ribosome_binding_site" /gene="ygdL" /locus_tag="STM2987" /note="putative RBS for ygdL; RegulonDB:STMS1H003039" gene complement(3139765..3140878) /gene="mltA" /locus_tag="STM2988" /db_xref="GeneID:1254511" CDS complement(3139765..3140862) /gene="mltA" /locus_tag="STM2988" /EC_number="3.2.1.-" /note="similar to E. coli membrane-bound lytic murein transglycosylase A (AAC75855.1); Blastp hit to AAC75855.1 (365 aa), 92% identity in aa 1 - 365" /codon_start=1 /transl_table=11 /product="membrane-bound lytic murein transglycosylase A" /protein_id="NP_461907.1" /db_xref="GeneID:1254511" /translation="MKGRWAKYVATGVMLAMLAACSSKPTDRGQQYKDGKFTQPFSLV NQPDAVGAPINAGDFAEQVNQIRSASPRLYTNQSNVYNAVQNWLRSGGDTRTMRQFGI DAWQMEGTDNYGNVQFTGYYTPVVQARHTRQGAFQYPIYSMPPKRGRLPSRAQIYAGA LSDKYILAWSNSLMDNFIMDVQGSGYIDFGDGSPLNFFSYAGKNGWPYRSIGKVLIDR GEVKKEDMSMQAIREWGEKHSEAEVRELLEQNPSFVFFKPQSFAPVKGASAVPLIGRA SVASDRSIIPPGTTLLAEVPLLDNNGKFSGQYELRLMVALDVGGAIKGQHFDIYQGIG PDAGHRAGWYNHYGRVWVLKSAPGAGNVFSG" misc_feature complement(3139801..3140862) /gene="mltA" /locus_tag="STM2988" /note="murein transglycosylase A; Provisional; Region: mltA; PRK11162" /db_xref="CDD:236866" regulatory complement(3140873..3140878) /regulatory_class="ribosome_binding_site" /gene="mltA" /locus_tag="STM2988" /note="putative RBS for mltA; RegulonDB:STMS1H003040" gene 3141070..3141143 /gene="metZ" /locus_tag="STM2989" /db_xref="GeneID:1254512" tRNA 3141070..3141143 /gene="metZ" /locus_tag="STM2989" /product="tRNA-Met" /db_xref="GeneID:1254512" gene 3141176..3141249 /gene="metW" /locus_tag="STM2990" /db_xref="GeneID:1254513" tRNA 3141176..3141249 /gene="metW" /locus_tag="STM2990" /product="tRNA-Met" /db_xref="GeneID:1254513" gene complement(3141362..3142622) /gene="amiC" /locus_tag="STM2991" /db_xref="GeneID:1254514" CDS complement(3141362..3142615) /gene="amiC" /locus_tag="STM2991" /EC_number="3.5.1.28" /note="similar to E. coli putative amidase (AAC75856.1); Blastp hit to AAC75856.1 (447 aa), 94% identity in aa 31 - 446" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-L-alanine amidase" /protein_id="NP_461908.1" /db_xref="GeneID:1254514" /translation="MSGANSAISRRRLLQGAGAMWLLSVSQVGLAAVSQVVAVRIWPA SSYTRVTVESNRLLKYKQFALSNPDRVVVDIEDVNLNSVLKGIGAQIRSDDPYIKSAR VGQFDPKTVRMVFELKQNVKPQLFALAPVAGFKERLVMDLYPANAQDMQDPLLALLED YNKGDLDKQVPPSQSGPQPGKAGRDRPIVIMLDPGHGGEDPGAIGKYKTREKDVVLQI ARRLRALIEKEGNMKVYMTRNEDIFIPLKVRVAKAQKQRADLFVSIHADAFTSRQPSG SSVFALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRYVDHTMFDMVQSLTIADSLK FGKAVLKQLGKINDLHKNKVEQAGFAVLKAPDIPSILVETAFISNIEEERKLKTATFQ QQVAESILAGIKAYFADGATLARRS" misc_feature complement(3141392..3142615) /gene="amiC" /locus_tag="STM2991" /note="N-acetylmuramoyl-L-alanine amidase AmiC; Region: amidase_AmiC; NF038267" /db_xref="CDD:468440" regulatory complement(3142617..3142622) /regulatory_class="ribosome_binding_site" /gene="amiC" /locus_tag="STM2991" /note="putative RBS for amiC; RegulonDB:STMS1H003041" gene 3142836..3144179 /gene="argA" /locus_tag="STM2992" /db_xref="GeneID:1254515" regulatory 3142836..3142841 /regulatory_class="ribosome_binding_site" /gene="argA" /locus_tag="STM2992" /note="putative RBS for argA; RegulonDB:STMS1H003042" CDS 3142848..3144179 /gene="argA" /locus_tag="STM2992" /EC_number="2.3.1.1" /note="amino-acid acetyltransferase; similar to E. coli N-acetylglutamate synthase; amino acid acetyltransferase (AAC75857.1); Blastp hit to AAC75857.1 (443 aa), 93% identity in aa 1 - 443" /codon_start=1 /transl_table=11 /product="N-alpha-acetylglutamate synthase" /protein_id="NP_461909.1" /db_xref="GeneID:1254515" /translation="MIKERKTELVEGFRHSVPYINTHRGKTFVIMLGGEAIEHDNFSS IVSDIGLLHSLGIRLVVVYGARPQIDANLAAHHHEPIYHKNTRVTDAKALELVKQAAG LLQLDITARLSMSLNNTPLQGAHINVVSGNFTIAQPLGVDDGVDYCHSGRIRRIDEDA INRQLDNGAIVLMGPVAVSVTGESFNLTSEEIATQLAVKLKAEKMIGFCSSQGVTNSE GGIISELFPNEAQARVEELEAQGDYNSGTVRFLRGAVKACRSGVRRCHLISYQEDGSL LQELFSRDGIGTQIVMESAEQIRRATINDIGGILELIRPLEQQGILVRRSREQLEMEI DKFTIIQRDNMTIACAALYPFVEEKIGEMACVAVHPDYRSSSRGEVLLERVAAQARQM GLRKLFVLTTRSIHWFQERGFTPVDIELLPESKKKMYNYQRRSKVLMADLG" misc_feature 3142848..3144173 /gene="argA" /locus_tag="STM2992" /note="N-acetylglutamate synthase; Validated; Region: PRK05279" /db_xref="CDD:235386" gene complement(3144282..3146128) /gene="recD" /locus_tag="STM2993" /db_xref="GeneID:1254516" CDS complement(3144282..3146117) /gene="recD" /locus_tag="STM2993" /EC_number="3.1.11.5" /note="similar to E. coli DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease (AAC75858.1); Blastp hit to AAC75858.1 (608 aa), 84% identity in aa 1 - 604" /codon_start=1 /transl_table=11 /product="exonuclease V, alpha chain" /protein_id="NP_461910.1" /db_xref="GeneID:1254516" /translation="MTIQERLLEAVEQKLLRPIDAQFALTVAGNDDPAVTLAAALLSH DAGEGHVCLPLSRLTLTEEAHPLLVACISETATPIDWKKRLLASAAVSCGDSPAPLIL CGERLYLNRMWCNERTVARFFNEVNQAIAVDEDQLSRILDALFPPTDEVNWQKVAAAV ALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGA ALRQLPLTDAQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDL PMMSRLIDSLPPHGRVIFLGDRDQLASVEAGAVLGDICAYVNAGFTAERARQLSRLTG SAIPAGAGTQAASLRDSLCLLQKSYRFGSDSGIGKLAAAINCGDRSAIQAVFQQGFSD IEKRTLQSSDDYAGMLDEALAGYGRYLRLLHEKATPEAILQAFNEYQLLCALREGPFG VRGLNDRIEQAMVQQRKIQRHPHSRWYEGRPVMIARNDSALGLFNGDIGIALDRGQGL RVWFVMPDGTIKSVQPSRLPEHDTTWAMTVHKSQGSEFDHAALILPSQRSPVVTRELV YTAVTRARRRLSLYADERILAGAIVTRTERRSGLATLFDEVSRTG" misc_feature complement(3144291..3146111) /gene="recD" /locus_tag="STM2993" /note="exodeoxyribonuclease V subunit alpha; Region: recD; PRK10875" /db_xref="CDD:236783" gene complement(3146114..3149659) /gene="recB" /locus_tag="STM2994" /db_xref="GeneID:1254517" CDS complement(3146114..3149659) /gene="recB" /locus_tag="STM2994" /EC_number="3.1.11.5" /note="similar to E. coli DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease (AAC75859.1); Blastp hit to AAC75859.1 (1180 aa), 84% identity in aa 1 - 1180" /codon_start=1 /transl_table=11 /product="exonuclease V, beta chain" /protein_id="NP_461911.1" /db_xref="GeneID:1254517" /translation="MNDVAETLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGL GGSAAFPRPLTVEELLVVTFTEAATEELRGRIRSNIHELRIACLRESTDNPLYARLLE EISDKKQAAQWLLLAERQMDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLR YQACADFWRRHCYPLPRDIAQVVFDVWKGPKALLKDIDRYLQGEAPVIKAPPSQEETL ASRHEQILARINQVKQQWCEAVSELDALIESSGIDRRKFNRGNQAKWIEKITAWAQEE TKNYQLPEALGKFSQRFLAERTKAGGVTPQHPLFVAIDNLLGEPLSIKDLVLTRALSE IRETVAQEKRRRGELGFDDMLSRLDTALRSESGEALAAAIRTRFPVAMIDEFQDTDPQ QYRIFRRIWRHQPDTALLLIGDPKQAIYAFRGADIFTYMKARSEVSAHYTLDTNWRSA PGMVNSVNKLFSQMNDAFMFRDIPFSPVKFAPRNQSLQFKVNDAPQPAMTLWLMEGES CGSGDYQSYMAQVCATQIRDWLRAGQTGDALLTNGDSSRPVRASDISVLVRSRREAAL IRDALTLLAIPSVYLSNRDSVFETLEAQEMLWVLQAVMAPERENTLRSALATSMMGLT ALDIETLNNDENAWDAVVEEFDGYRQIWHKRGVMPMLRALMSARNIAENLLATAGGER RLTDILHISELLQEAGSQLESEHALVRWLAQHILEPDSNASSQQLRLESDKHLVQIVT IHKSKGLEYPLVWLPFITHFRVQDQAFYHDRHSYEAVLDLSHAEESIALAEAERLAED LRLLYVALTRAVWHCSLGVAPLVRRRSDKKGETDVHQSALGRLLQKGEPMDAAGLRAC IEALCDEDIVCRTPGNTDNDRWQIAAASHAELSARALQRLLYDSWRVTSYSGLQQRGH SVAQDLIPRLDIDAAGVGEAAEAPAMTPHHFPRGASPGTFLHSLFEELDFTQPINPQW VQEKLELSGFETRWEPVLTRWLDTVLHVPLNETGVSLSVLTEREKQVEMEFYLPIAQP LTAGELDALIRRYDPLSAGCPALDFMQVRGMLKGFIDLVFRYEGRYYLLDYKSNWLGE DSAAYTQTAMAAAMQAHRYDLQYQLYTLALHRYLRHRMTNYDYERHFGGVIYLFLRGV DGERPQQGIFTTRPAAALINQLDDMFAGEMSEEAQ" misc_feature complement(3146117..3149659) /gene="recB" /locus_tag="STM2994" /note="exonuclease V subunit beta; Provisional; Region: recB; PRK10876" /db_xref="CDD:236784" regulatory complement(3146123..3146128) /regulatory_class="ribosome_binding_site" /gene="recD" /locus_tag="STM2993" /note="putative RBS for recD; RegulonDB:STMS1H003043" gene complement(3149652..3152551) /gene="ptr" /locus_tag="STM2995" /db_xref="GeneID:1254518" CDS complement(3149652..3152540) /gene="ptr" /locus_tag="STM2995" /EC_number="3.4.24.55" /note="similar to E. coli protease III (AAC75860.1); Blastp hit to AAC75860.1 (962 aa), 88% identity in aa 1 - 962" /codon_start=1 /transl_table=11 /product="protease III" /protein_id="NP_461912.1" /db_xref="GeneID:1254518" /translation="MPRSTWFKALLLLVALWGPAVQADIGWQPLQETIRKSDKDTRQY QAIRLDNDMVVLLVSDPQAVKSLSALVVPVGSLEDPEAHQGLAHYLEHMCLMGSKKYP QADSLAEYLKRHGGSHNASTAPYRTAFYLEVENDALPGAVDRLADAIAAPLLNKKYAE RERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSHFSGGNLETLSDKPGNPVQQAL IAFHEKYYSSNLMKAVIYSNKPLPELASIAAATYGRVPNKQIKKPEITVPVITEAQKG IIIHYVPALPRKVLRVEFRIDNNSAQFRSKTDELVSYLIGNRSPGTLSDWLQKQGLVE GISADSDPIVNGNSGVFAISATLTDKGLANRDEVVAAIFSYLNMLREKGIDKRYFDEL AHVLDLDFRYPSITRDMDYVEWLADTMIRVPVAHTLDAANIADRYDPAAIKNRLAMMT PQNARIWYISPQEPHNKTAYFVDAPYQVDKISEQTFKNWQQKAQGIALSLPELNPYIP DDFTLVKNDKNYVRPELIVDKADLRVVYAPSRYFASEPKADVSVVLRNPQAMDSARNQ VLFALNDYLAGMALDQLSNQAAVGGISFSTNANNGLMVTANGYTQRLPQLFLALLEGY FSYDATEEQLAQAKSWYTQMMDSAEKGKAYEQAIMPVQMISQVPYFSRDERRALLPSI TLKEVMAYRNALKTGARPEFLVIGNMSEAQATSLAQDVQKQLAANGSAWCRNKDVVVE KKQSVIFEKAGSSTDSALAAVFVPVGYDEYVSAAYSAMLGQIVQPWFYNQLRTEEQLG YAVFAFPMSVGRQWGMGFLLQSNDKQPSYLWQRYQAFFPDAEAKLRAMKPEEFAQIQQ AIITQMRQAPQTLGEEASRLSKDFDRGNMRFDSRDKIIAQIKLLTPQKLADFFHQAVV EPQGMAILSQIAGSQNGKAEYVHPTGWKVWDNVSALQQTLPLMSEKNE" misc_feature complement(3149661..3152540) /gene="ptr" /locus_tag="STM2995" /note="protease3; Provisional; Region: PRK15101" /db_xref="CDD:185056" regulatory complement(3152546..3152551) /regulatory_class="ribosome_binding_site" /gene="ptr" /locus_tag="STM2995" /note="putative RBS for ptr; RegulonDB:STMS1H003044" gene complement(3152718..3156100) /gene="recC" /locus_tag="STM2996" /db_xref="GeneID:1254519" CDS complement(3152718..3156089) /gene="recC" /locus_tag="STM2996" /EC_number="3.1.11.5" /note="similar to E. coli DNA helicase, ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease (AAC75861.1); Blastp hit to AAC75861.1 (1122 aa), 88% identity in aa 1 - 1122" /codon_start=1 /transl_table=11 /product="exonuclease V, subunit" /protein_id="NP_461913.2" /db_xref="GeneID:1254519" /translation="MLRVYHSNRLDVLEALMEFIVERERLDDPFEPEMILVQSTGMAQ WLQMTLSQKFGIAANIAFPLPASFIWEMFVRVLPDIPKESAFSKQSMSWKLMTLLPQL LDKDEFVLLRHYLTDDTDKRKLFQLSARAADLFDQYLVYRPDWLTQWEAGKTVEGLGE AQNWQAPLWKALVEYTAALGQPRWHRANLYQRFIQTLESATACPPGLPSRVFICGISA LPPVYLRALQALGKHIEIHLLFTNPCRYYWGDIKDPAWLAKLMARQRRHSFEDRHLPL FRENQNPEALFNSDGEQDIGNPLLASWGKLGRDYIYLLSELENSQELDAFVDITPDNL LHRIQADILELESHAVAGVNLEEYSRSDNKRLLDPEDNSLSFHVCHSPQREVEILHDR LLAMLEADPTLTPRDIIVMVADIDSYSPFIQAVFGSAPTERYLPYAISDRRARQSHPV LQAFISLLSLPDSRFVSEDVLALLDVPVLAARFTINEEGLRYLRLWVNESGIRWGIDD DNVRELELPATGQHTWQFGLTRMLLGYAMESAQGEWQSVLPYDESSGLIAELVGHLAS LLMQLNIWRRGLAQERPLEEWLPVCRDMFNDFFLPDADTEAAMTLIEQQWQAIIAEGV AAEYGDAVPISLLRDELAQRLDQERISQRFLAGPINICTLMPMRSIPFRVVCLLGMND GVYPRQLAPLGFDLMSQKPMRGDRSRRDDDRYLFLEALISAQQTLYISYIGRSIQDNS ERFPSVLVQELVDYIGQSHYLPGDETLTCDESEARVKAHITRLHTRMPFDAQNYQPGE QQSYAREWLPAASQSGKAHSDFVQPLPFTMPETLTLESLQRFWAHPVRAFFQMRLQVN FRSEESEIPDAEPFELEGLTRYQLNQQLLNTLVEEDDAERLFRRFRAAGELPYGAFGE IFWDAQCQEMQQLASRVIACRKPSQSLEVDLLCNGVQLTGWLPQVQEDGLLRWRPALI SVAQGVQLWLEHLVYCASGGSGESRLFLRKEGEWRFPPLDKTQAMAYLAQLIEGYREG MSSPLLVLPESGGAWIKACYDAENDVMLDDDDTLQKARTKFLQAYEGNMMVSGEGEDI WYQRLWRQLESETLQAIIAQSRHYLLPLFRFNQSR" misc_feature complement(3152724..3156089) /gene="recC" /locus_tag="STM2996" /note="exodeoxyribonuclease V subunit gamma; Region: recC; PRK11069" /db_xref="CDD:236835" regulatory complement(3156095..3156100) /regulatory_class="ribosome_binding_site" /gene="recC" /locus_tag="STM2996" /note="putative RBS for recC; RegulonDB:STMS1H003045" gene complement(3156105..3156436) /gene="ppdC" /locus_tag="STM2997" /db_xref="GeneID:1254520" CDS complement(3156105..3156425) /gene="ppdC" /locus_tag="STM2997" /note="putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein C (AAC75862.1); Blastp hit to AAC75862.1 (107 aa), 69% identity in aa 1 - 106" /codon_start=1 /transl_table=11 /product="prepilin peptidase dependent protein C" /protein_id="NP_461914.1" /db_xref="GeneID:1254520" /translation="MSHPLNLQRGFSLPEVLVAMVLMVMIVTALSGYQRVLMHSFALR HQYLQIWRQAWQQTALYPFSPADDWKANRMQTTQSGCVSISVTMVSPSGRQGQMTRLH CPNR" misc_feature complement(3156108..3156425) /gene="ppdC" /locus_tag="STM2997" /note="prepilin-type N-terminal cleavage/methylation domain-containing protein; Region: PRK10332" /db_xref="CDD:182384" gene complement(3156410..3156831) /gene="ygdB" /locus_tag="STM2998" /db_xref="GeneID:1254521" CDS complement(3156410..3156817) /gene="ygdB" /locus_tag="STM2998" /note="similar to E. coli orf, hypothetical protein (AAC75863.1); Blastp hit to AAC75863.1 (121 aa), 52% identity in aa 1 - 121" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461915.1" /db_xref="GeneID:1254521" /translation="MNRERGASSLILALLILILGSLLLQGVNQQQASYAARVTTQSLA IQRQALVQSALEWGRGQLWSGVTEMECRRYSSSGARVCLRRLSGDEVVMAAQDDGMTL WRLGNVIQGSIVFSPHGWSDFCPLKEVALCRIP" misc_feature complement(3156413..3156745) /gene="ygdB" /locus_tag="STM2998" /note="DUF2509 family protein; Region: PRK11521" /db_xref="CDD:183174" regulatory complement(3156431..3156436) /regulatory_class="ribosome_binding_site" /gene="ppdC" /locus_tag="STM2997" /note="putative RBS for ppdC; RegulonDB:STMS1H003046" gene complement(3156814..3157388) /gene="ppdB" /locus_tag="STM2999" /db_xref="GeneID:1254522" CDS complement(3156814..3157377) /gene="ppdB" /locus_tag="STM2999" /note="putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein B (AAC75864.1); Blastp hit to AAC75864.1 (187 aa), 67% identity in aa 3 - 187" /codon_start=1 /transl_table=11 /product="prepilin peptidase dependent protein B" /protein_id="NP_461916.1" /db_xref="GeneID:1254522" /translation="MSITTRGFSLLEVVLAMAIGSILLLGSARFLPALQREIWHNTRQ LSLEDEIWQRTYTVAKHLQRAGYCHGHCIGEGLHLAEQGQCVIVQWDGNNNGVWDTIP AKEADQTGFRMKDNVLETLRGATSCQGKGWEKMTDPNTVLITAFTVERRDITGFSPVL MLHLRGASKAEPQTVIDAQYSVTGFNL" misc_feature complement(3156817..3157377) /gene="ppdB" /locus_tag="STM2999" /note="prepilin peptidase-dependent protein; Region: PRK10557" /db_xref="CDD:236714" regulatory complement(3156826..3156831) /regulatory_class="ribosome_binding_site" /gene="ygdB" /locus_tag="STM2998" /note="putative RBS for ygdB; RegulonDB:STMS1H003047" gene complement(3157368..3157838) /gene="ppdA" /locus_tag="STM3000" /db_xref="GeneID:1254523" CDS complement(3157368..3157838) /gene="ppdA" /locus_tag="STM3000" /note="putative component in type IV pilin biogenesis; similar to E. coli prepilin peptidase dependent protein A (AAC75865.1); Blastp hit to AAC75865.1 (156 aa), 65% identity in aa 1 - 155" /codon_start=1 /transl_table=11 /product="prepilin peptidase dependent protein A" /protein_id="NP_461917.1" /db_xref="GeneID:1254523" /translation="MKKQQGYTLIETVVAMSLIIILSATGLYGWQRWQQQQRLWQTAC QVRDYLLQLRGDAHWHNRDHILRVVSEGGSWCFVSSVATQTSCTPSSPFVFTPDWRDV VLADITPSLAFFGLRNTAWAGHIVLKNAAGEWRLVVSSWGRIRLCERNEAATCQ" misc_feature complement(3157383..3157838) /gene="ppdA" /locus_tag="STM3000" /note="prepilin peptidase-dependent protein; Region: PRK10506" /db_xref="CDD:236704" regulatory complement(3157383..3157388) /regulatory_class="ribosome_binding_site" /gene="ppdA" /locus_tag="STM3000" /note="putative RBS for ppdB; RegulonDB:STMS1H003048" gene complement(3158023..3158825) /gene="thyA" /locus_tag="STM3001" /db_xref="GeneID:1254524" CDS complement(3158023..3158817) /gene="thyA" /locus_tag="STM3001" /EC_number="2.1.1.45" /note="similar to E. coli thymidylate synthetase (AAC75866.1); Blastp hit to AAC75866.1 (264 aa), 96% identity in aa 1 - 264" /codon_start=1 /transl_table=11 /product="thymidylate synthetase" /protein_id="NP_461918.1" /db_xref="GeneID:1254524" /translation="MKQYLELMQKVLDEGTQKNDRTGTGTLSIFGHQMRFNLQEGFPL VTTKRCHLRSIIHELLWFLQGDTNIAYLHENNVTIWDEWADENGDLGPVYGKQWRAWP TPDGRHIDQIATVLSQLKNDPDSRRIIVSAWNVGELDKMALAPCHAFFQFYVADGKLS CQLYQRSCDVFLGLPFNIASYALLVHMMAQQCDLDVGDFVWTGGDTHLYSNHMEQTHL QLSREPRALPKLVIKRKPDSLFDYRFDDFEIEGYDPHPGIKAPVAI" misc_feature complement(3158026..3158817) /gene="thyA" /locus_tag="STM3001" /note="Thymidylate synthase [Nucleotide transport and metabolism]; Region: ThyA; COG0207" /db_xref="CDD:439977" regulatory complement(3158820..3158825) /regulatory_class="ribosome_binding_site" /gene="thyA" /locus_tag="STM3001" /note="putative RBS for thyA; RegulonDB:STMS1H003049" gene complement(3158824..3159709) /gene="lgt" /locus_tag="STM3002" /db_xref="GeneID:1254525" CDS complement(3158824..3159699) /gene="lgt" /locus_tag="STM3002" /EC_number="2.4.99.-" /note="prolipoprotein diacylglyceryl transferase. (SW:LGT_SALTY)" /codon_start=1 /transl_table=11 /product="phosphatidylglycerol-prolipoprotein diacylglyceryl transferase" /protein_id="NP_461919.1" /db_xref="GeneID:1254525" /translation="MTSSYLHFPDFDPVIFSIGPVALHWYGLMYLVGFVFAMWLAVRR ANRPGSGWTKNEVENLLYAGFLGVFLGGRIGYVLFYNFPLFLDNPLYLFRVWDGGMSF HGGLIGVILVMIIFARRTKRSFFQVSDFIAPLIPFGLGAGRLGNFINGELWGRVDPDF RFAMLFPGSRAEDIALLPSHPQWQPIFDTYGVLPRHPSQLYELALEGVVLFIILNLFI RKPRPMGAVSGLFLIGYGAFRIIVEFFRQPDAQFTGAWVQYISMGQILSIPMIIAGAI MMVWAYRRRPQQHVS" misc_feature complement(3158836..3159687) /gene="lgt" /locus_tag="STM3002" /note="prolipoprotein diacylglyceryl transferase; Reviewed; Region: PRK00052" /db_xref="CDD:234599" regulatory complement(3159704..3159709) /regulatory_class="ribosome_binding_site" /gene="lgt" /locus_tag="STM3002" /note="putative RBS for lgt; RegulonDB:STMS1H003050" gene complement(3159915..3162181) /gene="ptsP" /locus_tag="STM3003" /db_xref="GeneID:1254526" CDS complement(3159915..3162161) /gene="ptsP" /locus_tag="STM3003" /EC_number="2.7.3.9" /note="similar to E. coli PTS system, enzyme I, transcriptional regulator (with NPR and NTR proteins) (AAC75868.1); Blastp hit to AAC75868.1 (748 aa), 94% identity in aa 1 - 748" /codon_start=1 /transl_table=11 /product="general PTS system enzyme I, transcriptional regulator with NPR and NTR proteins" /protein_id="NP_461920.1" /db_xref="GeneID:1254526" /translation="MLTRLREIVEKVASAPRLNEALNILVTDICLAMDTEVCSVYLAD HDRRCYYLMATRGLKKPRGRTVALAFDEGIVGLVGRLAEPINLADAQKHPSFKYIPSV KEERFRAFLGVPIIQRRQLLGVLVVQQRELRQYDESEESFLVTLATQMAAILSQSQVT ALFGQYRQTRIRALPAAPGVAIATGWQDATMPLMEQVYEASTLDTSLERERLTGALEE AANEFRRYSKRFAAGAQKETAAIFDLYSHLLSDARLRRELFAEVDKGAVAEWAVKKII EKFAEQFAALTDNYLKERAGDLRTLGQRLLFHLDDSVQGPNAWPERFILVADELSATT LAELPQDRLAGVVVRDGAANSHAAIMVRALGIPTVMGADIQPSVLHRRTLVVDGYRGE LLVDPEPVLIQEYQRLISEEIELSRLAEDDVNLPAQLKSGERVKVMLNAGLSPEHEEK LGSRIDGIGLYRTEIPFMLQSGFPSEEEQVAQYQGMLQMFNDKPVTLRTLDVGADKQL PYMPISEENPCLGWRGIRITLDQPEIFLIQVRAMLRANAATGNLSILLPMVTSIDEVD EARRLIERAGREVEEMIGYAIPKPRIGIMLEVPSMVFMLPHLANRIDFISVGTNDLTQ YILAVDRNNTRVASIYDSLHPAMLRALSMIAQEAEKHGLDLRLCGEMAGDPMCVAILI GLGYRHLSMNGRSVARVKYLLRHIDFEDAQTLARRSLEAQMATEVRHQVAAFMERRGM GGLIRGGL" misc_feature complement(3159921..3162161) /gene="ptsP" /locus_tag="STM3003" /note="phosphoenolpyruvate--protein phosphotransferase; Region: PRK11061" /db_xref="CDD:182937" gene complement(3162174..3162715) /gene="ygdP" /locus_tag="STM3004" /db_xref="GeneID:1254527" CDS complement(3162174..3162704) /gene="ygdP" /locus_tag="STM3004" /note="NTP pyrophosphohydrolase; similar to E. coli putative invasion protein (AAC75869.1); Blastp hit to AAC75869.1 (176 aa), 94% identity in aa 1 - 176" /codon_start=1 /transl_table=11 /product="putative invasion protein" /protein_id="NP_461921.1" /db_xref="GeneID:1254527" /translation="MIDDDGYRPNVGIVICNRQGQVMWARRFGQHSWQFPQGGINPGE SAEQAMYRELFEEVGLSRKDVRILASTRNWLRYKLPKRLVRWDTKPVCIGQKQKWFLL QLMSADAEINMQTSSTPEFDGWRWVSYWYPVRQVVSFKRDVYRRVMKEFASVVMALQD NPPKLQSAPAYRRKRG" misc_feature complement(3162237..3162704) /gene="ygdP" /locus_tag="STM3004" /note="RNA pyrophosphohydrolase; Reviewed; Region: PRK00714" /db_xref="CDD:234820" regulatory complement(3162176..3162181) /regulatory_class="ribosome_binding_site" /gene="ygdP" /locus_tag="STM3004" /note="putative RBS for ptsP; RegulonDB:STMS1H003051" regulatory complement(3162710..3162715) /regulatory_class="ribosome_binding_site" /gene="ygdP" /locus_tag="STM3004" /note="putative RBS for ygdP; RegulonDB:STMS1H003052" gene 3163375..3164082 /gene="mutH" /locus_tag="STM3005" /db_xref="GeneID:1254528" regulatory 3163375..3163380 /regulatory_class="ribosome_binding_site" /gene="mutH" /locus_tag="STM3005" /note="putative RBS for mutH; RegulonDB:STMS1H003053" CDS 3163387..3164082 /gene="mutH" /locus_tag="STM3005" /note="similar to E. coli methyl-directed mismatch repair (AAC75870.1); Blastp hit to AAC75870.1 (229 aa), 88% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="methyl-directed mismatch repair protein" /protein_id="NP_461922.1" /db_xref="GeneID:1254528" /translation="MSALCPLLTPPASEALLLAQARQLSGYTLGELAAMAGITTPKDL KRDKGWIGVLLEIWLGASAGSKPEQDFAALGVELKTIPVDSLGRPLETTFVCVAPLTG NSGVTWETSHVRHKLKRVLWVPVEGDRSIPLAERRVGSPLLWSPSEEEDRQLRLDWEE LMDMIVLGQVERITARHGEVLQLRPKAANARALTEAIGARGEPILTLPRGFYLKKNFT QALLARHFLLQNP" misc_feature 3163411..3164064 /gene="mutH" /locus_tag="STM3005" /note="DNA mismatch repair protein; Provisional; Region: PRK05070" /db_xref="CDD:179923" misc_feature order(3163516..3163524,3163528..3163533,3163540..3163545, 3163552..3163554,3163576..3163590,3163594..3163596, 3163615..3163617,3163621..3163626,3163630..3163632, 3163657..3163662,3163666..3163668,3163675..3163677, 3163732..3163734,3163771..3163773,3163906..3163914, 3163930..3163932,3163936..3163959,3163963..3163968, 3164005..3164007,3164020..3164022,3164026..3164031) /gene="mutH" /locus_tag="STM3005" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:411704" misc_feature order(3163552..3163554,3163594..3163596,3163615..3163617, 3163621..3163623,3163732..3163734) /gene="mutH" /locus_tag="STM3005" /note="active site" /db_xref="CDD:411704" gene 3164250..3164977 /gene="ygdQ" /locus_tag="STM3006" /db_xref="GeneID:1254529" regulatory 3164250..3164255 /regulatory_class="ribosome_binding_site" /gene="ygdQ" /locus_tag="STM3006" /note="putative RBS for ygdQ; RegulonDB:STMS1H003054" CDS 3164264..3164977 /gene="ygdQ" /locus_tag="STM3006" /note="similar to E. coli putative transport protein (AAC75871.1); Blastp hit to AAC75871.1 (237 aa), 94% identity in aa 1 - 237" /codon_start=1 /transl_table=11 /product="putative integral membrane transport protein" /protein_id="NP_461923.1" /db_xref="GeneID:1254529" /translation="MLFAWITDPNAWLALGTLTLLEIVLGIDNIIFLSLVVAKLPTAQ RNHARRLGLAAAMVMRLALLASIAWVTRLTNPLFELFGEAISARDLILLLGGLFLIWK ASKEIHESIEGEEEGLKTRVSSFLGAIVQIMLLDIIFSLDSVITAVGLSDHLFIMMAA VVIAVGVMMFAARPIGEFVDRHPSVKMLALSFLILVGFTLILESFDVHVPKGYIYFAM FFSIAVESLNLLRNKKNPL" misc_feature 3164279..3164929 /gene="ygdQ" /locus_tag="STM3006" /note="Tellurite resistance membrane protein TerC [Inorganic ion transport and metabolism]; Region: TerC; COG0861" /db_xref="CDD:440622" gene 3165135..3165365 /gene="ygdR" /locus_tag="STM3007" /db_xref="GeneID:1254530" regulatory 3165135..3165140 /regulatory_class="ribosome_binding_site" /gene="ygdR" /locus_tag="STM3007" /note="putative RBS for ygdR; RegulonDB:STMS1H003055" CDS 3165147..3165365 /gene="ygdR" /locus_tag="STM3007" /note="similar to E. coli orf, hypothetical protein (AAC75872.1); Blastp hit to AAC75872.1 (72 aa), 90% identity in aa 1 - 72" /codon_start=1 /transl_table=11 /product="putative POT family peptide transport protein" /protein_id="NP_461924.1" /db_xref="GeneID:1254530" /translation="MKKWAVVISAVGLAFAVSGCSSDYVMATKDGRMILTDGKPQVDD DTGLVSYTDAQGNEMQINRDEVSQIIER" misc_feature 3165150..3165362 /gene="ygdR" /locus_tag="STM3007" /note="Bacterial protein of unknown function (DUF903); Region: DUF903; cl05512" /db_xref="CDD:471259" gene 3165544..3166596 /gene="tas" /locus_tag="STM3008" /db_xref="GeneID:1254531" regulatory 3165544..3165549 /regulatory_class="ribosome_binding_site" /gene="tas" /locus_tag="STM3008" /note="putative RBS for tas; RegulonDB:STMS1H003056" CDS 3165556..3166596 /gene="tas" /locus_tag="STM3008" /note="similar to E. coli orf, hypothetical protein (AAC75873.1); Blastp hit to AAC75873.1 (346 aa), 91% identity in aa 1 - 346" /codon_start=1 /transl_table=11 /product="putative aldo/keto reductase" /protein_id="NP_461925.1" /db_xref="GeneID:1254531" /translation="MHYHRIPHSSLEVSTLGLGTMTFGEQNSEADAHAQLDYAIANGI NLIDAAEMYPVPPRPETQGLTESYIGNWLAKRGNREKLIIASKVSGPARNNDQGIRPH QALDRKNIREALHDSLTRLQTDYLDLYQVHWPQRPTNCFGKLGYNWTDSTPVVSLLET LDALSEFQRAGKIRYIGVSNETAFGVMRYLHLAEKHDLPRIVTIQNPYSLLNRSYEVG LAEVSQYEGVELLAYSCLAFGTLTGKYLNGAKPAGARNTLFSRFTRYSGEQAQKAVAS YVDIAKRHNLDPAQMALAFVRRQPFVASTLLGATTMAQLKTNVESLHLTLSEEVLAEI EAAHQVYTYPAP" misc_feature 3165556..3166593 /gene="tas" /locus_tag="STM3008" /note="putative aldo-keto reductase; Provisional; Region: tas; PRK10625" /db_xref="CDD:236727" misc_feature order(3165610..3165618,3165631..3165633,3165697..3165699, 3165712..3165714,3165814..3165816,3165949..3165951, 3166090..3166095,3166168..3166170,3166252..3166272, 3166279..3166281,3166285..3166287,3166312..3166320, 3166420..3166422,3166471..3166485,3166495..3166497, 3166507..3166509) /gene="tas" /locus_tag="STM3008" /note="active site" /db_xref="CDD:381320" misc_feature order(3165697..3165699,3165712..3165714,3165814..3165816, 3165949..3165951) /gene="tas" /locus_tag="STM3008" /note="catalytic tetrad [active]" /db_xref="CDD:381320" gene complement(3166683..3167898) /gene="ygeD" /locus_tag="STM3009" /db_xref="GeneID:1254532" CDS complement(3166683..3167885) /gene="ygeD" /locus_tag="STM3009" /note="resistance protein; similar to E. coli putative resistance proteins (AAC75874.1); Blastp hit to AAC75874.1 (397 aa), 88% identity in aa 1 - 396" /codon_start=1 /transl_table=11 /product="putative efflux protein" /protein_id="NP_461926.1" /db_xref="GeneID:1254532" /translation="MSESVRTNTSIWSKGMLSVIVAQFLSAFGDNALLFATLALLKAQ FYPDWSQPVLQMVFVGAYILFAPFVGQIADSFAKGRVMMVANGLKLAGAAGICLGINP FVGYTLVGIGAAAYSPAKYGILGELTTGDKLVKANGLMEASTIAAILLGSVAGGVLAD WHVIAALVACALAYAGAVAANLFIPKLVAARPGQSWRLSAMTRSFFSACVVLWRNGET RFSLVGTGLFWGAGVTLRFLLVLWVPVALGITDNATPTYLNAMVAVGIVVGAGAAAKL VTLETVSRCMPAGILIGVVVAIFSLQHALLPAYALLLLIGMLGGFFVVPLNALLQERG KKSVGAGNAIAVQNLGENSAMLLMLGLYSLAVLVGVPAVAIGIGFGVLFALAIAALWI WQRRQASY" misc_feature complement(3166689..3167852) /gene="ygeD" /locus_tag="STM3009" /note="lysophospholipid transporter LplT; Provisional; Region: PRK11195" /db_xref="CDD:236879" misc_feature complement(order(3166821..3166823,3166830..3166835, 3166842..3166847,3166854..3166856,3166905..3166907, 3166917..3166919,3166929..3166934,3167088..3167090, 3167100..3167102,3167175..3167177,3167184..3167192, 3167199..3167204,3167211..3167213,3167442..3167444, 3167451..3167456,3167463..3167465,3167523..3167525, 3167532..3167540,3167544..3167549,3167688..3167690, 3167784..3167786,3167793..3167798,3167805..3167810)) /gene="ygeD" /locus_tag="STM3009" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340863" gene complement(3167878..3170049) /gene="aas" /locus_tag="STM3010" /db_xref="GeneID:1254533" CDS complement(3167878..3170037) /gene="aas" /locus_tag="STM3010" /EC_number="6.2.1.20" /note="bifunctional; similar to E. coli 2-acyl-glycerophospho-ethanolamine acyltransferase; acyl-acyl-carrier protein synthetase (AAC75875.1); Blastp hit to AAC75875.1 (719 aa), 91% identity in aa 1 - 719; acyl-acyl carrier protein synthetase" /codon_start=1 /transl_table=11 /product="2-acylglycerophospho-ethanolamine acyl transferase" /protein_id="NP_461927.1" /db_xref="GeneID:1254533" /translation="MLFGFFRNLFRVLYRVRVTGDVRALQGNRVLITPNHVSFIDGML LALFLPVRPVFAVYTSISQQWYMRWLTPLIDFVPLDPTKPMSIKHLVRLVEQGRPVVI FPEGRISVTGSLMKIYDGAGFVAAKSGATVIPLRIDGAELTPFSRLKGLVKRRLFPRI QLHILPPTQIPMPEAPRARDRRKIAGEMLHQIMMEARMAVRPRETLYESLLAAQYRYG AGKNCIEDINFTPDTYRKLLTKTLFVGRILEKYSVEGEKIGLMLPNAAISAAVIFGAV SRRRIPAMMNYTAGVKGLTSAITAAEIKTIFTSRQFLDKGKLWHLPEQLTQVRWVYLE DLKADVTPADKLWIFAHLLAPRLAQVKQQPEDAAIILFTSGSEGHPKGVVHSHKSILA NVEQIKTIADFTANDRFMSALPLFHSFGLTVGLFTPLLTGAEVFLYPSPLHYRIVPEL VYDRNCTVLFGTSTFLGNYARFANPYDFYRLRYVVAGAEKLQESTKQLWQDKFGLRIL EGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLAVPGIENGGRLQLKGPNIMNG YLRVEKPGVLEVPSAENSRGETERGWYDTGDIVRFDENGFVQIQGRAKRFAKIAGEMV SLEMVEQLALGVSADKMHATAIKSDASKGEALVLFTTDSELTREKLQHYAREHGIPEL AVPRDIRYLKQLPLLGSGKPDFVTLKSWVDAPEQHHE" misc_feature complement(3167884..3170037) /gene="aas" /locus_tag="STM3010" /note="bifunctional acyl-ACP--phospholipid O-acyltransferase/long-chain-fatty-acid--ACP ligase; Region: PRK08043" /db_xref="CDD:181207" regulatory complement(3167893..3167898) /regulatory_class="ribosome_binding_site" /gene="ygeD" /locus_tag="STM3009" /note="putative RBS for ygeD; RegulonDB:STMS1H003057" regulatory complement(3170044..3170049) /regulatory_class="ribosome_binding_site" /gene="aas" /locus_tag="STM3010" /note="putative RBS for aas; RegulonDB:STMS1H003058" gene 3170619..3171658 /gene="galR" /locus_tag="STM3011" /db_xref="GeneID:1254534" regulatory 3170619..3170624 /regulatory_class="ribosome_binding_site" /gene="galR" /locus_tag="STM3011" /note="putative RBS for galR; RegulonDB:STMS1H003059" CDS 3170630..3171658 /gene="galR" /locus_tag="STM3011" /note="GalR/LacI family; similar to E. coli repressor of galETK operon (AAC75876.1); Blastp hit to AAC75876.1 (343 aa), 90% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="transcriptional repressor of galETK operon" /protein_id="NP_461928.1" /db_xref="GeneID:1254534" /translation="MATIKDVARLAGVSVATVSRVINDSPKASEASRLAVTSAMESLS YHPNANARALAQQATETLGLVVGDVSDPFFGAMVKAVEQVAYHTGNFLLIGNGYHNEQ KERQAIEQLIRHRCAALVVHAKMIPDADLASLMKQIPGMVLINRILPGLEHRCVALDD RYGAWLATRHLIQQGHTRIGYICSNHTISDAEDRLRGYYDALAESHIPANDRLVTFGE PDESGGEQAMTELLGRGRNFTAVACYNDSMAAGAMGVLNDNGVGVPGEVSLIGFDDVL VSRYVRPRLTTIRYPIVTMATQAAELALALAGKCPTPEVTHVFSPTLVRRHSVSTPTD TGHLSTTD" misc_feature 3170630..3171655 /gene="galR" /locus_tag="STM3011" /note="HTH-type transcriptional regulator GalR; Region: PRK10727" /db_xref="CDD:182681" gene 3171660..3172691 /locus_tag="STM3012" /db_xref="GeneID:1254535" regulatory 3171660..3171665 /regulatory_class="ribosome_binding_site" /locus_tag="STM3012" /note="putative RBS for STM3012; RegulonDB:STMS1H003060" CDS 3171669..3172691 /locus_tag="STM3012" /note="similar to E. coli ascBF operon repressor (AAC75756.1); Blastp hit to AAC75756.1 (337 aa), 41% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_461929.1" /db_xref="GeneID:1254535" /translation="MMATMLDVSRHAGVSKATVSRVLNGTGQVKESTRQKVFTAMQAL GYRPNLLARSLANRTSNSIGLVVSTFDGFYFGSLLRRASRQAESHNKQLIVTDGHDTP EREQKAVQMLADRQCDAIILYTRYMDELAILSLIDATEMPLVIINRNVTQARDRAIFF EQETAAFQAVEYLITQGHRDIACITLPVHTPTGTSRVAGYRKALEKYGIPWQPAKVKY GDYTLTRGYDACRELLEEGVTFSALFACNDDTALGAAKALRQAGLRIPQDVSLFGFDD APGATWLEPGLSTVYLPIEAMIATAIDQAVRLANSEPVAPIPPFTGTLILRESVAAGP FFQRPA" misc_feature 3171675..3171881 /locus_tag="STM3012" /note="helix_turn _helix lactose operon repressor; Region: HTH_LACI; smart00354" /db_xref="CDD:197675" misc_feature order(3171708..3171722,3171726..3171731,3171738..3171740, 3171753..3171758,3171765..3171767,3171804..3171806, 3171813..3171815,3171822..3171827,3171831..3171836) /locus_tag="STM3012" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature 3171804..3171833 /locus_tag="STM3012" /note="domain linker motif [active]" /db_xref="CDD:143331" misc_feature 3171852..3172652 /locus_tag="STM3012" /note="ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism; Region: PBP1_GalS-like; cd06270" /db_xref="CDD:380494" misc_feature order(3171852..3171854,3171873..3171875,3171891..3171893, 3171906..3171908,3171915..3171917,3171942..3171953, 3171957..3171959,3171999..3172001,3172011..3172013, 3172335..3172340,3172434..3172436,3172512..3172517) /locus_tag="STM3012" /note="dimer interface (closed form) [polypeptide binding]; other site" /db_xref="CDD:380494" misc_feature order(3171888..3171890,3172035..3172037,3172254..3172256, 3172329..3172331,3172407..3172409,3172491..3172493) /locus_tag="STM3012" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380494" gene complement(3172701..3173975) /gene="lysA" /locus_tag="STM3013" /db_xref="GeneID:1254536" CDS complement(3172701..3173963) /gene="lysA" /locus_tag="STM3013" /EC_number="4.1.1.20" /note="similar to E. coli diaminopimelate decarboxylase (AAC75877.1); Blastp hit to AAC75877.1 (420 aa), 88% identity in aa 1 - 420" /codon_start=1 /transl_table=11 /product="diaminopimelate decarboxylase" /protein_id="NP_461930.1" /db_xref="GeneID:1254536" /translation="MSLPHYHAETDLNAENLLRLPAEFGCPVWVYDAHIIRRQIAALQ QFDVVRFAQKACSNIHILRLMRALGVKVDSVSLGEIERALAAGYDPQTCPDDIVFTAD VIDAATLARVSELHIPVNAGSVDMLTQLGQVSPGHRVWLRVNPGFGHGHSQKTNTGGE NSKHGIWHSDLPAALAVMQKYRLKLVGIHMHIGSGVDYGHLEQVCGAMVRQVLECGQD VEAISAGGGLSIPYREGEEPVDTRHYYGLWNAAREQIARHLGHAVKLEIEPGRFLVAQ SGVLVTQVRSVKQMGSRHFVLVDAGFNDLMRPAMYGSYHRISALAADGRALENGPWVE TVVAGPLCESGDVFTQQEGGMVETRALPAVIPGDYLVLHDTGAYGASMSSNYNSRPLL PEVLFDNGQARLIRRRQTIEELLALEML" misc_feature complement(3172710..3173945) /gene="lysA" /locus_tag="STM3013" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes; Region: PLPDE_III; cl00261" /db_xref="CDD:469695" misc_feature complement(order(3172806..3172808,3172818..3172820, 3172830..3172832,3172938..3172940,3173031..3173033, 3173043..3173045,3173151..3173162,3173283..3173288, 3173382..3173384,3173391..3173393,3173397..3173399, 3173538..3173540,3173664..3173666,3173745..3173747, 3173802..3173804,3173808..3173810)) /gene="lysA" /locus_tag="STM3013" /note="active site" /db_xref="CDD:143501" misc_feature complement(order(3172830..3172832,3172938..3172940, 3173151..3173162,3173283..3173288,3173382..3173384, 3173391..3173393,3173397..3173399,3173538..3173540, 3173664..3173666,3173745..3173747,3173802..3173804, 3173808..3173810)) /gene="lysA" /locus_tag="STM3013" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143501" misc_feature complement(order(3172806..3172808,3172818..3172820, 3172830..3172832,3172935..3172940,3173031..3173033, 3173043..3173045,3173151..3173153,3173382..3173384, 3173391..3173393,3173802..3173804)) /gene="lysA" /locus_tag="STM3013" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143501" misc_feature complement(order(3172938..3172940,3173802..3173804)) /gene="lysA" /locus_tag="STM3013" /note="catalytic residues [active]" /db_xref="CDD:143501" misc_feature complement(order(3172791..3172793,3172800..3172811, 3172815..3172823,3172926..3172928,3172932..3172949, 3173073..3173075,3173079..3173081,3173100..3173102, 3173106..3173108,3173469..3173480,3173589..3173591, 3173598..3173600,3173640..3173642,3173652..3173660, 3173727..3173732,3173736..3173741,3173784..3173789)) /gene="lysA" /locus_tag="STM3013" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143501" regulatory complement(3173970..3173975) /regulatory_class="ribosome_binding_site" /gene="lysA" /locus_tag="STM3013" /note="putative RBS for lysA; RegulonDB:STMS1H003061" gene 3174070..3175016 /gene="lysR" /locus_tag="STM3014" /db_xref="GeneID:1254537" regulatory 3174070..3174075 /regulatory_class="ribosome_binding_site" /gene="lysR" /locus_tag="STM3014" /note="putative RBS for lysR; RegulonDB:STMS1H003062" CDS 3174081..3175016 /gene="lysR" /locus_tag="STM3014" /note="similar to E. coli positive regulator for lys (AAC75878.1); Blastp hit to AAC75878.1 (311 aa), 86% identity in aa 1 - 311" /codon_start=1 /transl_table=11 /product="positive LysR family transcriptional regulator" /protein_id="NP_461931.1" /db_xref="GeneID:1254537" /translation="MAAVNLRHIEIFHAVMTAGNLTEAARLLHTSQPTVSRELARFEK VLGLTLFERTRGRLHPTVQGLRLFEEVQRSWYGLDRIVSAAESLREFRQGELSIACLP VFSQSFLPPLLPPFLARYPDVSLNIVPQESPLLEEWLSAQRHDLGLTETLHAPAGTTR TELLTLNEVCVLPCDHPLAAKTVLTPDDFQGENFISLSRLDSYRQLLDTLFAEHQVKR RMVVETHSAASVCAMVRAGAGVSIVNPLTALDYAASGVTVRRFSIDVPFTVSLIRPLH RPASALVDAFSKHLQTHLSRLVEPLEVILGPMTKA" misc_feature 3174081..3175007 /gene="lysR" /locus_tag="STM3014" /note="DNA-binding transcriptional regulator LysR; Provisional; Region: PRK11013" /db_xref="CDD:236819" gene complement(3174988..3175707) /gene="ygeA" /locus_tag="STM3015" /db_xref="GeneID:1254538" CDS complement(3174988..3175695) /gene="ygeA" /locus_tag="STM3015" /note="similar to E. coli putative resistance proteins (AAC75879.1); Blastp hit to AAC75879.1 (230 aa), 79% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="putative aspartate racemase" /protein_id="NP_461932.1" /db_xref="GeneID:1254538" /translation="MKTIGLLGGMSWESTIPYYRLINEGIKQQLGGLHSASLLLHSVD FHDIEVCQRRDEWDKAGDILAQAAHGLQQAGAEGIVLCTNTMHKIAHVIESRCSLPFL HIADATGRAIARQGLHRVALLGTRYTMEQDFYRGRLEQQFAIETIVPEADDRARINQV IFDELCQGTFTDASRHYYLQVIEQLAAQGAQGVIFGCTEIGLLVPQTQSALPVFDTTA IHAADAVSFMLSSSAPE" misc_feature complement(3175006..3175695) /gene="ygeA" /locus_tag="STM3015" /note="putative racemase; Provisional; Region: PRK10200" /db_xref="CDD:182300" regulatory complement(3175702..3175707) /regulatory_class="ribosome_binding_site" /gene="ygeA" /locus_tag="STM3015" /note="putative RBS for ygeA; RegulonDB:STMS1H003063" gene complement(3175808..3177396) /gene="araE" /locus_tag="STM3016" /db_xref="GeneID:1254539" CDS complement(3175808..3177226) /gene="araE" /locus_tag="STM3016" /note="low-affinity transporter;MFS family; similar to E. coli low-affinity L-arabinose transport system proton symport protein (AAC75880.1); Blastp hit to AAC75880.1 (472 aa), 97% identity in aa 1 - 472" /codon_start=1 /transl_table=11 /product="L-arabinose: proton symport protein" /protein_id="NP_461933.1" /db_xref="GeneID:1254539" /translation="MVSINHDSALTPRSLRDTRRMNMFVSVSAAVAGLLFGLDIGVIA GALPFITDHFVLTSRLQEWVVSSMMLGAAIGALFNGWLSFRLGRKYSLMAGAILFVLG SLGSAFASSVEVLIGARVILGVAVGIASYTAPLYLSEMASENVRGKMISMYQLMVTLG IVLAFLSDTAFSYSGNWRAMLGVLALPAVLLIILVVFLPNSPRWLAQKGRHIEAEEVL RMLRDTSEKARDELNEIRESLKLKQGGWALFKANRNVRRAVFLGMLLQAMQQFTGMNI IMYYAPRIFKMAGFTTTEQQMIATLVVGLTFMFATFIAVFTVDKAGRKPALKIGFSVM ALGTLVLGYCLMQFDNGTASSGLSWLSVGMTMMCIAGYAMSAAPVVWILCSEIQPLKC RDFGITCSTTTNWVSNMIIGATFLTLLDSIGAAGTFWLYTALNIAFIGITFWLIPETK NVTLEHIERKLMAGEKLRNIGV" misc_feature complement(3175856..3177202) /gene="araE" /locus_tag="STM3016" /note="MFS transporter, sugar porter (SP) family; Region: SP; TIGR00879" /db_xref="CDD:273317" misc_feature complement(order(3176003..3176005,3176012..3176017, 3176084..3176086,3176096..3176101,3176108..3176113, 3176306..3176308,3176390..3176395,3176402..3176407, 3176417..3176422,3176744..3176746,3176753..3176758, 3176765..3176767,3177107..3177109,3177119..3177121)) /gene="araE" /locus_tag="STM3016" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340873" regulatory complement(3177230..3177235) /regulatory_class="ribosome_binding_site" /gene="araE" /locus_tag="STM3016" /note="putative RBS for araE; RegulonDB:STMS1H003064" protein_bind complement(3177292..3177314) /gene="araE" /locus_tag="STM3016" /note="putative binding site for AraC, RegulonDB: STMS1H000010" /bound_moiety="AraC" protein_bind complement(3177306..3177324) /gene="araE" /locus_tag="STM3016" /note="putative binding site for AraC, RegulonDB: STMS1H000011" /bound_moiety="AraC" protein_bind complement(3177339..3177354) /gene="araE" /locus_tag="STM3016" /note="putative binding site for CRP, RegulonDB: STMS1H000088" /bound_moiety="CRP" regulatory complement(3177369..3177377) /regulatory_class="minus_10_signal" /gene="araE" /locus_tag="STM3016" /note="putative -10_signal for araE; RegulonDB:STMLTH004571" regulatory complement(3177388..3177396) /regulatory_class="minus_35_signal" /gene="araE" /locus_tag="STM3016" /note="putative -35_signal for araE; RegulonDB:STMLTH004571" gene complement(3177580..3178352) /gene="kduD" /locus_tag="STM3017" /db_xref="GeneID:1254540" CDS complement(3177580..3178341) /gene="kduD" /locus_tag="STM3017" /EC_number="1.1.1.125" /note="similar to E. coli 2-deoxy-D-gluconate 3-dehydrogenase (AAC75881.1); Blastp hit to AAC75881.1 (253 aa), 93% identity in aa 1 - 253" /codon_start=1 /transl_table=11 /product="2-deoxy-D-gluconate 3-dehydrogenase" /protein_id="NP_461934.1" /db_xref="GeneID:1254540" /translation="MILNAFSLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVE PTETIARVTALGRRFLSLTADLRQIDGIPALLERAVAEYGHIDILVNNAGLIRREDAI DFTEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTA SKSGVMGITRLMANEWAKHNINVNAIAPGYMSTNNTQQLRADAQRSAEILDRIPAGRW GLPGDLMGPVVFLASSAADYINGYTIAVDGGWLAR" misc_feature complement(3177583..3178341) /gene="kduD" /locus_tag="STM3017" /note="2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD; Region: PRK08993" /db_xref="CDD:181605" misc_feature complement(order(3177754..3177765,3177769..3177780, 3177856..3177858,3177868..3177870,3177907..3177915, 3177997..3177999,3178057..3178068,3178144..3178152, 3178213..3178221,3178276..3178287,3178291..3178293)) /gene="kduD" /locus_tag="STM3017" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187605" misc_feature complement(order(3177814..3177822,3177826..3177834, 3177838..3177843,3177850..3177855,3177862..3177867, 3177874..3177879,3177895..3177903,3177958..3177960, 3177967..3177969,3177976..3177981,3177988..3177990, 3178003..3178005,3178012..3178017,3178024..3178026, 3178030..3178044,3178135..3178137)) /gene="kduD" /locus_tag="STM3017" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187605" misc_feature complement(order(3177856..3177858,3177868..3177870, 3177907..3177909,3177994..3177996)) /gene="kduD" /locus_tag="STM3017" /note="active site" /db_xref="CDD:187605" regulatory complement(3178347..3178352) /regulatory_class="ribosome_binding_site" /gene="kduD" /locus_tag="STM3017" /note="putative RBS for kduD; RegulonDB:STMS1H003065" gene complement(3178398..3179243) /gene="kduI" /locus_tag="STM3018" /db_xref="GeneID:1254541" CDS complement(3178398..3179234) /gene="kduI" /locus_tag="STM3018" /EC_number="5.3.1.17" /note="similar to E. coli homolog of pectin degrading enzyme 5-keto 4-deoxyuronate isomerase (AAC75882.1); Blastp hit to AAC75882.1 (278 aa), 85% identity in aa 1 - 278; putative pectin degrading enzyme" /codon_start=1 /transl_table=11 /product="5-keto 4-deoxyuronate isomerase" /protein_id="NP_461935.1" /db_xref="GeneID:1254541" /translation="MDVRQSIHSEHAKTLDTQALRREFLIENIFVADEYTMVYSHIDR IIVGGIMPVSHPVEIGGEVGKQLGVSRLLDRRELGVINIGGAGAIIVDGQRHDIGHRD ALYIGKGAKELVFVSNEASRPAKFYYNCAPAHTAYPTKKVSPADVAPVTLGDNLTSNR RTINKYFVPDVLETCQLSMGLTELAPGNLWNTMPCHTHERRMEVYLYFNMEEDSCVFH MMGQPQETRHIVMRNEQAVISPSWSIHSGVGTKAYTFVWGMVGENQVFDDMDHVAVQD LR" misc_feature complement(3178401..3179234) /gene="kduI" /locus_tag="STM3018" /note="5-keto-4-deoxyuronate isomerase; Provisional; Region: PRK00924" /db_xref="CDD:179169" regulatory complement(3179238..3179243) /regulatory_class="ribosome_binding_site" /gene="kduI" /locus_tag="STM3018" /note="putative RBS for kduI; RegulonDB:STMS1H003066" gene complement(3179664..3180851) /gene="yqeF" /locus_tag="STM3019" /db_xref="GeneID:1254542" CDS complement(3179664..3180842) /gene="yqeF" /locus_tag="STM3019" /EC_number="2.3.1.9" /note="similar to E. coli putative acyltransferase (AAC75883.1); Blastp hit to AAC75883.1 (394 aa), 91% identity in aa 2 - 393" /codon_start=1 /transl_table=11 /product="putative acetyl-CoA acetyltransferase" /protein_id="NP_461936.1" /db_xref="GeneID:1254542" /translation="MKEVVIVGALRTPIGCFQGTLARHSAVELGSMVVKALIERTGVD ANAIDEVILGQVLTAGAGQNPARQSAIKGGLPTTVSAITINDVCGSGLKALHLATQAI QCGEADIVIAGGQENMSRAPHVLNDSRSGALPDADNLVDSLVHDGLWDAFNDYHIGVT AENLAREYGISRELQDAYALSSQQKARAAIDTGRFKDEIVPIVTQRNGQTAIVDTDEQ PRADASAEGLALLHPAFDSLGSVTAGNASSINDGAAAVMMMSEAKAQALGLPVLARIR AFASVGVDPALMGIAPVYATRRCLERAGWQLTEVDLIEANEAFAAQALSVGKMLEWDE RRVNVNGGAIALGHPIGASGCRILVSLVHEMVKRDARKGLATLCIGGGQGVALTIERD " misc_feature complement(3179667..3180842) /gene="yqeF" /locus_tag="STM3019" /note="putative acyltransferase; Provisional; Region: PRK05790" /db_xref="CDD:180261" regulatory complement(3180846..3180851) /regulatory_class="ribosome_binding_site" /gene="yqeF" /locus_tag="STM3019" /note="putative RBS for yqeF; RegulonDB:STMS1H003067" gene complement(3180965..3181833) /locus_tag="STM3020" /db_xref="GeneID:1254543" CDS complement(3180965..3181828) /locus_tag="STM3020" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73606.1); Blastp hit to AAC73606.1 (308 aa), 26% identity in aa 2 - 275" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_461937.1" /db_xref="GeneID:1254543" /translation="MRYSPEALIAFVETVSCGSFSAAARRLRKSQSTISIAIAHLEAD LGFSLFDRSSRQPVLTEEGKRVLSYVQAILSASDRLDEVALTLSGETEARLTFVLSDT LHPDSLEELMAQFDRQFPHTEFECLIGENDDVIDLLQKGRAQIGLIEARDDYPTDIGA ARLPVQSWMGVYVATTHPLASQTNLQWEQLHTWRELRLNTYLDSNANITRGPAWSAPN YLLLLSMAVQGFGWCVLPCALVEEFAAEKPLAQLDVPGWPRAIAIDLLWNKKTPPGTA GNWLRYHLQQK" misc_feature complement(3180971..3181813) /locus_tag="STM3020" /note="DNA-binding transcriptional regulator, LysR family [Transcription]; Region: LysR; COG0583" /db_xref="CDD:440348" regulatory complement(3181828..3181833) /regulatory_class="ribosome_binding_site" /locus_tag="STM3020" /note="putative RBS for STM3020; RegulonDB:STMS1H003068" gene 3181899..3182387 /locus_tag="STM3021" /db_xref="GeneID:1254544" regulatory 3181899..3181904 /regulatory_class="ribosome_binding_site" /locus_tag="STM3021" /note="putative RBS for STM3021; RegulonDB:STMS1H003069" CDS 3181905..3182387 /locus_tag="STM3021" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461938.1" /db_xref="GeneID:1254544" /translation="MIKSKVFSFMQHDAIQRRSLPERIFHAVCFEGIATAILAPTTAW LMQRSVLEMGGLTILLATTAMIWNIIYNALFDRLWPAHQVRRTAKVRALHALGFESGF IVIGVSIVAWVLNVSLLQAFTLEIGFFLFFLPYTMLYNWAYDVLRQRIVTRRQQRVSA " misc_feature 3181959..3182348 /locus_tag="STM3021" /note="multidrug/biocide efflux PACE transporter; Region: PACE_efflu_PCE; NF033665" /db_xref="CDD:411268" gene 3182529..3183758 /locus_tag="STM3022" /db_xref="GeneID:1254545" CDS 3182529..3183758 /locus_tag="STM3022" /note="similar to E. coli putative transporter protein (AAC75884.1); Blastp hit to AAC75884.1 (409 aa), 90% identity in aa 1 - 408" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_461939.1" /db_xref="GeneID:1254545" /translation="MSKIWSKDETLWSFALYGTAVGAGTLFLPIQLGSAGAIVLFITA LVAWPLTYWPHKALCQFILSSKTSAGEGITGAVTHYYGKKIGNIITTLYFIAFFVVVL IYAVAITNSLTEQLAKHIQIDIRIRMAVSFGVVLILNMIFLMGRHATLRVMGFLVFPL IAYFLFLSLYLTGSWQPSLLTGQMSLDSHTLHQVWISIPVMVFAFSHTPIISTFAIDR RENFGDQAMDKCKKIMKVAYLIICLSVLFFVFSCLLSIPPSYIEDARNEGVTILSALS MMPNAPAWLSISGIIVAVVAMSKSFLGTYFGVIEGATEMVRTTLQQVGVKKSRAFNRA LSIMLVSGITFIICCINPNAISMIYAISGPLIAMILFIMPTLSTYLIPALKPYRSVGN FITLVVGLLCVSVMFFG" misc_feature 3182529..3183755 /locus_tag="STM3022" /note="Amino acid permease [Amino acid transport and metabolism]; Region: SdaC; COG0814" /db_xref="CDD:440576" gene complement(3183789..3184072) /gene="yohL" /locus_tag="STM3023" /db_xref="GeneID:1254546" CDS complement(3183789..3184061) /gene="yohL" /locus_tag="STM3023" /note="similar to E. coli orf, hypothetical protein (AAC75166.1); Blastp hit to AAC75166.1 (90 aa), 93% identity in aa 1 - 90" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461940.1" /db_xref="GeneID:1254546" /translation="MSHTIRDKQKLKARTSKIQGQVIALKKMLDEPHECAAVLQQIAA IRGAVNGLMREVIKGHLTEHIVHQSDEARREEDLDVILKVLDSYIK" misc_feature complement(3183792..3184061) /gene="yohL" /locus_tag="STM3023" /note="Ni(II)/Co(II)-binding transcriptional repressor RcnR; Region: PRK15039" /db_xref="CDD:184999" misc_feature complement(order(3183870..3183872,3183882..3183884, 3183957..3183959,3184053..3184055)) /gene="yohL" /locus_tag="STM3023" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(3183804..3183833,3183837..3183842, 3183867..3183869,3183876..3183884,3183888..3183896, 3183900..3183905,3183912..3183917,3183924..3183929, 3183933..3183938,3183942..3183950,3183954..3183962, 3183966..3183977,3183984..3183989,3183993..3183998, 3184005..3184007,3184014..3184019,3184026..3184031, 3184038..3184040)) /gene="yohL" /locus_tag="STM3023" /note="putative homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(3183804..3183815,3183822..3183824, 3183882..3183884,3183894..3183896,3183903..3183905, 3183912..3183917,3183924..3183929,3183933..3183938, 3183942..3183950,3183954..3183962,3183966..3183977, 3183984..3183989,3183993..3183998,3184005..3184007, 3184014..3184019,3184026..3184031,3184038..3184040)) /gene="yohL" /locus_tag="STM3023" /note="putative homodimer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(3183816..3183821,3183825..3183833, 3183837..3183842,3183867..3183872,3183876..3183881, 3183888..3183893,3183900..3183902)) /gene="yohL" /locus_tag="STM3023" /note="putative homodimer-homodimer interface [polypeptide binding]; other site" /db_xref="CDD:197388" misc_feature complement(order(3183822..3183824,3183882..3183884)) /gene="yohL" /locus_tag="STM3023" /note="putative allosteric switch controlling residues; other site" /db_xref="CDD:197388" regulatory complement(3184067..3184072) /regulatory_class="ribosome_binding_site" /gene="yohL" /locus_tag="STM3023" /note="putative RBS for yohL; RegulonDB:STMS1H003070" gene 3184170..3185049 /gene="yohM" /locus_tag="STM3024" /db_xref="GeneID:1254547" regulatory 3184170..3184175 /regulatory_class="ribosome_binding_site" /gene="yohM" /locus_tag="STM3024" /note="putative RBS for yohM; RegulonDB:STMS1H003071" CDS 3184183..3185049 /gene="yohM" /locus_tag="STM3024" /note="similar to E. coli orf, hypothetical protein (AAC75167.1); Blastp hit to AAC75167.1 (274 aa), 78% identity in aa 1 - 274" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461941.1" /db_xref="GeneID:1254547" /translation="MGEFSTLLQQGNGWFFIPSAILLGILHGLEPGHSKTMMAAFIIA IKGTVKQAVMLGLAATLSHTAIVWLIALGGMYLSRAFTAQSVEPWLQLISAIIILSTA CWMFWRTWRGEQQWLAGNHHHDHDHDHDHDHDHDHDHDHDHDHDHDHHGHIHPEGATS KAYQDAHERAHAADIQRRFDGQTVTNGQILLFGLTGGLIPCPAAITVLLICIQLKAFT LGATMVLSFSLGLALTLVTVGVGAAISVQQAAKRWSGFSTLARRAPYFSSILIGLVGV YMGIHGYTGIMQ" misc_feature 3184183..3185046 /gene="yohM" /locus_tag="STM3024" /note="nickel/cobalt efflux transporter RcnA; Region: PRK10019" /db_xref="CDD:236641" gene complement(3185259..3186024) /locus_tag="STM3025" /db_xref="GeneID:1254548" CDS complement(3185259..3186017) /locus_tag="STM3025" /note="transcriptional regulator SprB (gi|5007028)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461942.1" /db_xref="GeneID:1254548" /translation="MTEHNRIPAWQIIVYGDCWPVTIAVAHLVRRFMPGCNCETAYRQ PVLLQQLRRKPEAILILCLRPREHLFLFYSLRQILPDYPVMIISDELFFSDRVVLKVY GGIPALLEQELAEILIRWRRDEQWAGGARLRRTGALDAFLLSPDPVTGFLEVPPIFNN PKRLMNYMDQLMHREILACGVSLAQLRLLQEVYRGRGRLSALCGRLNTQEKQIWQDKY RLLVKLGMRNRLRELLFGTRFCKSLQRTPFIAPQ" misc_feature complement(3185274..3185984) /locus_tag="STM3025" /note="transcriptional activator SprB; Provisional; Region: PRK15320" /db_xref="CDD:185220" regulatory complement(3186019..3186024) /regulatory_class="ribosome_binding_site" /locus_tag="STM3025" /note="putative RBS for STM3025; RegulonDB:STMS1H003072" gene complement(3186660..3187743) /locus_tag="STM3026" /db_xref="GeneID:1254549" CDS complement(3186660..3187736) /locus_tag="STM3026" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_461943.1" /db_xref="GeneID:1254549" /translation="MTEWIFNLKTKLTVLVMMLCSLCVTKVYAVELGINECAVTSGQN INLRSINLTTDDFKPGPDSVIYTINQDAVFKCYMGYDTQFPQLVFNQGYFSKFTKTLD AMGLGFRMSIQETGNASSVVSFSWDEIKSTQSGNELRKEFGTKLPVGTTERKVRITLD FLYTKAYSESSAVTAFTGISNVLNIVPFSYSLRQNGFVLSGFNVRILRNGLGKVDIVP LQVNFGHIYTTYEPSQTRQANFTVIARQVLRPAMGQEFTIPLAITFGKGALTQDTGQT LNLVSLDGPNKGQPNGLRLSIKDDKGKEITFDKQEVLGDITITGAVTGNVSKVYTAVI TPTPGGSVKTGTFSAAIPVTVTYN" gene complement(3187733..3188483) /gene="stdC" /locus_tag="STM3027" /db_xref="GeneID:1254550" CDS complement(3187733..3188476) /gene="stdC" /locus_tag="STM3027" /note="similar to E. coli putative chaperone (AAC73811.1); Blastp hit to AAC73811.1 (242 aa), 40% identity in aa 20 - 230" /codon_start=1 /transl_table=11 /product="putative fimbrial chaparone protein" /protein_id="NP_461944.1" /db_xref="GeneID:1254550" /translation="MKNSRRSRVILLALAAAWSQYSPAAVNVDRTRIIMDAPQKTVAI TLNNDDKTTPFLAQSWVTDADGVRTDALMALPPLQRIDAGQKSQVRITQVRGLTDKLP QDRETLFWFNVRGVPPKPEDDNVLQLAMQSQLKLFYRPKAIIRSSSDQPERKLTAERN AGHLTLRNPTPYYITVAWLGADRSHRLSGFREGVMVPPLGNLPLKAVLPAETRTLWVG YIDDYGGLQMNRYTCDALNCAFKDAGATS" misc_feature complement(3187736..3188452) /gene="stdC" /locus_tag="STM3027" /note="fimbrial chaperone protein StdC; Provisional; Region: PRK15254" /db_xref="CDD:185166" regulatory complement(3187738..3187743) /regulatory_class="ribosome_binding_site" /gene="stdC" /locus_tag="STM3027" /note="putative RBS for STM3026; RegulonDB:STMS1H003073" regulatory complement(3188478..3188483) /regulatory_class="ribosome_binding_site" /gene="stdC" /locus_tag="STM3027" /note="putative RBS for stdC; RegulonDB:STMS1H003074" gene complement(3188517..3191023) /gene="stdB" /locus_tag="STM3028" /db_xref="GeneID:1254551" CDS complement(3188517..3191006) /gene="stdB" /locus_tag="STM3028" /note="similar to E. coli putative membrane protein (AAC76082.1); Blastp hit to AAC76082.1 (821 aa), 42% identity in aa 20 - 817" /codon_start=1 /transl_table=11 /product="putative outer membrane usher protein" /protein_id="NP_461945.1" /db_xref="GeneID:1254551" /translation="MKITRLAILITLTFSVLKSQATEFNASLLDSGNLSNVDLTAFSR EGYVAPGNYILDIWLNDQPVREQYPVRVVPVAGLDAAVICVTTDMVAMLGLKDKIIHG LKPVTGIPDGQCLELRSADSQVRYSAENQRLTFIIPQAWMRYQDPDWVPPSRWSDGVT AGLLDYSLMVNRYMPQQGETSTSYSLYGTAGFNLGAWRLRSDYQYSRFDSGQGASQSD FYLPQTYLFRALPALRSKLTLGQTYLSSAIFDSFRFAGLTLASDERMLPPSLQGYAPK ISGIANSNAQVTVSQNGRILYQTRVSPGPFELPDLSQNISGNLDVSVRESDGSVRTWQ VNTASVPFMARQGQVRYKVAAGRPLYGGTHNNSTVSPDFLLGEATWGAFNNTSLYGGL IASTGDYQSAALGIGQNMGLLGALSADVTRSDARLPHGQKQSGYSYRINYAKTFDKTG STLAFVGYRFSDRHFLSMPEYLQRRTTDGGDAWHEKQSYTVTYSQSVPVLNMSAALSV SRLNYWNAQSNNNYMLSLNKVFSLGDLQGLSASVSFARNQYTGGGSQNQVYATISIPW GDSRQVSYSVQKDNRGGLQQTVNYSDFHNPDTTWNISAGHNRYDTGSNSSFSGSVQSR LPWGQAAADATLQPGQYRSLGLSWYGSVTATAHGAAFSQSMAGNEPRMMIDTGDVAGV PVNGNSGVTNRFGVGVVSAGSSYRRSDISVDVAALPEDVDVSSSVISQVLTEGAVGYR KIDANQGEQVLGHIRLADGASPPFGALVVSWKTGRTAGMVGDGGLAYLTGLSGEDRRT LNVSWDGRVQCRLTLPETVTLSRGPLLLPCR" misc_feature complement(3188520..3191006) /gene="stdB" /locus_tag="STM3028" /note="fimbrial outer membrane usher protein StdB; Provisional; Region: PRK15255" /db_xref="CDD:185167" regulatory complement(3191018..3191023) /regulatory_class="ribosome_binding_site" /gene="stdB" /locus_tag="STM3028" /note="putative RBS for stdB; RegulonDB:STMS1H003075" gene complement(3191126..3191849) /gene="stdA" /locus_tag="STM3029" /db_xref="GeneID:1254552" CDS complement(3191126..3191836) /gene="stdA" /locus_tag="STM3029" /note="similar to E. coli putative fimbrial-like protein (AAC73813.1); Blastp hit to AAC73813.1 (188 aa), 32% identity in aa 8 - 187" /codon_start=1 /transl_table=11 /product="putative fimbrial-like protein" /protein_id="NP_461946.3" /db_xref="GeneID:1254552" /translation="MLRLTPGVYYSYESFLNAFINTLRVVFSLCKIILIHPKDILSMR NKIILAMAAAGMMYGASVFAADTTPTAGPFGSGKILFTGTITNSPCDIAPGDDAITVP FGQISYRKLNTANATTDSKPFTIHLQNCAFDPNETTIAGSAGKMSKVTVSFSGTADTS GKAYVSTGSAQHVGVQLLKGDNTSLITPNTPMPDGDAQQLQAGNNELNFFARLIALTD AATPGDVNASVTYTLKYL" misc_feature complement(3191129..3191710) /gene="stdA" /locus_tag="STM3029" /note="fimbrial protein; Region: PRK15210" /db_xref="CDD:185132" regulatory complement(3191844..3191849) /regulatory_class="ribosome_binding_site" /gene="stdA" /locus_tag="STM3029" /note="putative RBS for stdA; RegulonDB:STMS1H003076" gene complement(3192429..3193077) /locus_tag="STM3030" /db_xref="GeneID:1254553" CDS complement(3192429..3193061) /locus_tag="STM3030" /note="similar to E. coli orf, hypothetical protein (AAC75434.1); Blastp hit to AAC75434.1 (211 aa), 46% identity in aa 47 - 208" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_461947.1" /db_xref="GeneID:1254553" /translation="MKSHIMPGVALMVILFSGNIMAATNMTDNVTLNNDKISGQAWQA MRDIGMSRFELFNGRTQKAEQLAAQAEKLLNDDSTDWNLYVKSDKKAPVEGDHYIRIN SSITVAEDYLPAGQKNDAINKANQKMKEGDKKGTIEALKLAGVSVIENQELIPLQQTR KDVTTALSLMNEGKYYQAGLLLKSAQDGIVVDSQSVQESPTHSVQHDAAH" misc_feature complement(3192465..3193061) /locus_tag="STM3030" /note="hypothetical protein; Provisional; Region: PRK10316" /db_xref="CDD:182374" regulatory complement(3193072..3193077) /regulatory_class="ribosome_binding_site" /locus_tag="STM3030" /note="putative RBS for STM3030; RegulonDB:STMS1H003077" gene complement(3193108..3193651) /locus_tag="STM3031" /db_xref="GeneID:1254554" CDS complement(3193108..3193644) /locus_tag="STM3031" /note="similar to E. coli outer membrane protein X (AAC73901.1); Blastp hit to AAC73901.1 (171 aa), 29% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="ail and ompX-like protein" /protein_id="NP_461948.1" /db_xref="GeneID:1254554" /translation="MNKMLLAGSTGIVLLSAAASPVWADDNASTFSLGYAQSHTNHAG TLRGVRLANNYEMSPDWGLTTSFAWLNGSQRYSDESSNGRVTTRYYSLLAGPSWKINN QLSLYSQVGPVLLHQRDHGINESDSKVGYGYSAGVAYTPVSSVAITLGYEGADFDATH NSGSLNSNGFNLGVGYRF" misc_feature complement(3193111..3193644) /locus_tag="STM3031" /note="Porin superfamily. These outer membrane channels share a beta-barrel structure that differ in strand and shear number. Classical (gram-negative) porins are non-specific channels for small hydrophillic molecules and form 16 beta-stranded barrels (16,20)...; Region: OM_channels; cl21487" /db_xref="CDD:473880" regulatory complement(3193646..3193651) /regulatory_class="ribosome_binding_site" /locus_tag="STM3031" /note="putative RBS for STM3031; RegulonDB:STMS1H003078" mobile_element complement(3194217..3194925) /mobile_element_type="insertion sequence:IS200_4" gene complement(3194324..3194788) /gene="tnpA_4" /locus_tag="STM3032" /db_xref="GeneID:1254555" CDS complement(3194324..3194782) /gene="tnpA_4" /locus_tag="STM3032" /note="transposase for insertion sequence element is200 (SW:T200_SALTY)" /codon_start=1 /transl_table=11 /product="transposase for IS200" /protein_id="NP_461949.1" /db_xref="GeneID:1254555" /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKL CEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRN REFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK" misc_feature complement(3194399..3194770) /gene="tnpA_4" /locus_tag="STM3032" /note="Transposase IS200 like; Region: Y1_Tnp; cl00848" /db_xref="CDD:469954" regulatory complement(3194783..3194788) /regulatory_class="ribosome_binding_site" /gene="tnpA_4" /locus_tag="STM3032" /note="putative RBS for tnpA_4; RegulonDB:STMS1H003079" gene complement(3195162..3195568) /locus_tag="STM3033" /db_xref="GeneID:1254556" CDS complement(3195162..3195560) /locus_tag="STM3033" /note="contains PIN domain" /codon_start=1 /transl_table=11 /product="putative nucleic acid-binding protein" /protein_id="NP_461950.1" /db_xref="GeneID:1254556" /translation="MLKFMLDTNTCIFTIKNKPEHIRERFNLNTSRMCISSITLMELI YGAEKSLAPERNLAVVEGFISRLEVLDYDTQAAIHTGQIRAELARKGTPVGPYDQMIA GHAGSRGLVVVTNNLREFERIPGIRIEDWC" misc_feature complement(3195165..3195560) /locus_tag="STM3033" /note="tRNA(fMet)-specific endonuclease VapC; Region: PRK13725" /db_xref="CDD:184277" misc_feature complement(order(3195213..3195218,3195231..3195236, 3195258..3195281,3195297..3195299,3195306..3195311, 3195315..3195323,3195327..3195332,3195342..3195350, 3195354..3195359,3195366..3195368,3195372..3195380, 3195384..3195398,3195417..3195419,3195423..3195431, 3195435..3195443,3195447..3195452,3195459..3195464, 3195483..3195491,3195513..3195545)) /locus_tag="STM3033" /note="oligomeric interface [polypeptide binding]; other site" /db_xref="CDD:350312" misc_feature complement(order(3195213..3195218,3195231..3195236, 3195258..3195281,3195309..3195311,3195342..3195344, 3195348..3195350,3195354..3195359,3195366..3195368, 3195372..3195380,3195384..3195398,3195423..3195431, 3195435..3195437,3195459..3195464,3195483..3195491, 3195513..3195545)) /locus_tag="STM3033" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:350312" misc_feature complement(order(3195261..3195263,3195270..3195275, 3195297..3195299,3195306..3195311,3195315..3195323, 3195327..3195332,3195342..3195350,3195378..3195380, 3195390..3195392,3195417..3195419,3195426..3195431, 3195435..3195443,3195447..3195452)) /locus_tag="STM3033" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:350312" gene complement(3195560..3195794) /locus_tag="STM3034" /db_xref="GeneID:1254557" CDS complement(3195560..3195787) /locus_tag="STM3034" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461951.1" /db_xref="GeneID:1254557" /translation="MHTTLFFSNRTQAVRLPKSISFPEDVKHVEIIAVGRSRIITPVG ESWDSWFDGEGASTDFMSTREQPAVQEREGF" misc_feature complement(3195563..3195781) /locus_tag="STM3034" /note="type II toxin-antitoxin system VapB family antitoxin; Region: TA_anti_VapB; NF040493" /db_xref="CDD:439718" regulatory complement(3195563..3195568) /regulatory_class="ribosome_binding_site" /locus_tag="STM3034" /note="putative RBS for STM3033; RegulonDB:STMS1H003080" regulatory complement(3195789..3195794) /regulatory_class="ribosome_binding_site" /locus_tag="STM3034" /note="putative RBS for STM3034; RegulonDB:STMS1H003081" gene 3195957..3196215 /locus_tag="STM3035" /db_xref="GeneID:2673722" regulatory 3195957..3195962 /regulatory_class="ribosome_binding_site" /locus_tag="STM3035" /note="putative RBS for STM3035; RegulonDB:STMS1H003082" CDS 3195964..3196215 /locus_tag="STM3035" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_449411.1" /db_xref="GeneID:2673722" /translation="MHKKHMCPWLLPGLLGLARCAPVPHTYAAIIEAGFYPEGTDLQL VLKIIETARQEIRLMDYSFTSWEVVRFEHSVSTKFSMSK" misc_feature 3196054..>3196173 /locus_tag="STM3035" /note="Catalytic domain of phospholipase D superfamily proteins; Region: PLDc_SF; cl15239" /db_xref="CDD:472788" gene 3196483..3197296 /locus_tag="STM3036" /db_xref="GeneID:1254559" regulatory 3196483..3196488 /regulatory_class="ribosome_binding_site" /locus_tag="STM3036" /note="putative RBS for STM3036; RegulonDB:STMS1H003083" CDS 3196490..3197296 /locus_tag="STM3036" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461953.1" /db_xref="GeneID:1254559" /translation="MIMKVNAWTILLMSAHLTACAVPGTEKYQTSMDSVTAEKISRII QSDVIPYKGENHGEVISRVSSAFLGTPYQADTLIGGPGIPEVLVANFNGVDCFTLADY VEALARSDNQKSFLHNLARTRYAAGKVAYLSRRHFFSDWFAAAPRNARDVTPDISPDY VVVDKQLNHKPDGGEYIPGLGIHPRKINYIPGRAINQQVMNHLKNGDYIGVYSPLDGL DVSHVGIVVRHDEQVWFRNASSLAANRKVVDTPFMEYMHSRPGIVVLRAE" misc_feature 3196673..3197272 /locus_tag="STM3036" /note="Protein of unknown function (DUF1460); Region: DUF1460; pfam07313" /db_xref="CDD:429403" gene complement(3197431..3197501) /gene="glyU" /locus_tag="STM3037" /db_xref="GeneID:1254560" tRNA complement(3197431..3197501) /gene="glyU" /locus_tag="STM3037" /product="tRNA-Gly" /db_xref="GeneID:1254560" gene complement(3197581..3198339) /locus_tag="STM3038" /db_xref="GeneID:1254561" CDS complement(3197581..3198339) /locus_tag="STM3038" /note="similar to E. coli putative lipoprotein (AAC75903.1); Blastp hit to AAC75903.1 (259 aa), 84% identity in aa 8 - 259" /codon_start=1 /transl_table=11 /product="putative metalloendopeptidase" /protein_id="NP_461954.1" /db_xref="GeneID:1254561" /translation="MVLSAGRLNKNSLGIAVLLCTGLLLAGCSSNSGSGTYSGSVYTV KRGDTLYRISRATGTSVKELARLNGISPPYTIEVGQRIKVRGSAKSSTSTRKTSNKTA TKTAAVRPSSSVPKSSWPPVGQRCWVWPANGKVILPYSTAEGGNKGIDIAGARGTPVY AAGAGKVVYVGNQLRGYGNLIMIKHNEDYITAYAHNDTMLVNNGQSVKAGQKIATMGS TDAASVRLHFQIRYRATAIDPLRYLPPQGSKPKC" misc_feature complement(3197584..3198315) /locus_tag="STM3038" /note="amidase activator ActS; Region: amid_act_ActS; NF040883" /db_xref="CDD:468819" gene 3198593..3199149 /gene="idi" /locus_tag="STM3039" /db_xref="GeneID:1254562" regulatory 3198593..3198598 /regulatory_class="ribosome_binding_site" /gene="idi" /locus_tag="STM3039" /note="putative RBS for idi; RegulonDB:STMS1H003084" CDS 3198604..3199149 /gene="idi" /locus_tag="STM3039" /EC_number="5.3.3.2" /note="similar to E. coli putative enzyme (AAC75927.1); Blastp hit to AAC75927.1 (182 aa), 70% identity in aa 1 - 180" /codon_start=1 /transl_table=11 /product="isopentenyldiphosphate isomerase" /protein_id="NP_461955.1" /db_xref="GeneID:1254562" /translation="MTEEHVVLLDEQDKPSGTLEKYAAHTLNTPLHLAFSCWLFNEDG QLLVTRRSLSKKAWPGVWTNSVCGHPQQGETTEEAIIRRCRFELGVEITDLTPVYPHF SYRATDPNGIVENEVCPVFAARATSVLQVNSEEVMDYQWSEFKSVWKSLLATPWAFSP WMVMQASDEQARERLLNYCQR" misc_feature 3198604..3199146 /gene="idi" /locus_tag="STM3039" /note="isopentenyl-diphosphate Delta-isomerase; Region: PRK03759" /db_xref="CDD:235156" gene complement(3199225..3200753) /gene="lysS" /locus_tag="STM3040" /db_xref="GeneID:1254563" CDS complement(3199225..3200742) /gene="lysS" /locus_tag="STM3040" /EC_number="6.1.1.6" /note="similar to E. coli lysine tRNA synthetase, constitutive; suppressor of ColE1 mutation in primer RNA (AAC75928.1); Blastp hit to AAC75928.1 (505 aa), 95% identity in aa 1 - 505" /codon_start=1 /transl_table=11 /product="constitutive lysine tRNA synthetase" /protein_id="NP_461956.1" /db_xref="GeneID:1254563" /translation="MSEQNAQGADEVVDLNNEMKARREKLAALREQGIPFPNDFRRDR TSDQLHAEFDAKEAEELEALNIEVSVAGRMMTRRIMGKASFVTLQDVGGRIQLYVARD DLPEGVYNEQFKKWDLGDILGAKGKLFKTKTGELSIHCTELRLLTKALRPLPDKFHGL QDQEARYRQRYLDLISNDESRNTFKTRSKILAGIRQFMVARGFMEVETPMMQVIPGGA SARPFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGISVRHNPEFT MMELYMAYADYKDLIELTESLFRTLAQDVLGTTQVPYGDEVFDFGKPFEKLTMREAIK KYRPETDMADLDNFDSAKAIAESIGIHVEKSWGLGRIVTEIFDEVAEAHLIQPTFITE YPAEVSPLARRNDVNPEITDRFEFFIGGREIGNGFSELNDAEDQAQRFLDQVNAKAAG DDEAMFYDEDYVTALEHGLPPTAGLGIGIDRMVMLFTNSHTIRDVILFPAMRPVK" misc_feature complement(3199234..3200703) /gene="lysS" /locus_tag="STM3040" /note="lysyl-tRNA synthetase; Reviewed; Region: lysS; PRK00484" /db_xref="CDD:234778" misc_feature complement(3200104..3200118) /gene="lysS" /locus_tag="STM3040" /note="motif 1; other site" /db_xref="CDD:238398" misc_feature complement(order(3199300..3199302,3199456..3199458, 3199468..3199470,3199477..3199479,3199498..3199500, 3199918..3199920,3199930..3199932,3199948..3199950, 3199954..3199956,3200020..3200022)) /gene="lysS" /locus_tag="STM3040" /note="active site" /db_xref="CDD:238398" misc_feature complement(3199948..3199959) /gene="lysS" /locus_tag="STM3040" /note="motif 2; other site" /db_xref="CDD:238398" misc_feature complement(3199300..3199311) /gene="lysS" /locus_tag="STM3040" /note="motif 3; other site" /db_xref="CDD:238398" regulatory complement(3200748..3200753) /regulatory_class="ribosome_binding_site" /gene="lysS" /locus_tag="STM3040" /note="putative RBS for lysS; RegulonDB:STMS1H003085" gene complement(3200752..3201633) /gene="prfB" /locus_tag="STM3041" /db_xref="GeneID:1254564" CDS complement(3200752..3201633) /gene="prfB" /locus_tag="STM3041" /note="peptide chain release factor 2 (RF-2). (SW:RF2_SALTY)" /codon_start=1 /transl_table=11 /product="peptide chain release factor RF-2" /protein_id="NP_461957.3" /db_xref="GeneID:1254564" /translation="MTQGLDDVSGLLELAVEADDEETFNEAVAELNTLEEKLAQLEFR RMFSGEYDSADCYLDIQAGSGGTEAQDWASMLLRMYLRWAEARGFKTEVIEESEGEVA GIKSATIKISGEYAYGWLRTETGVHRLVRKSPFDSGGRRHTSFSSAFVYPEVDDDIDI DINPADLRIDVYRASGAGGQHVNRTESAVRITHIPTGIVTQCQNDRSQHKNKDQAMKQ MKAKLYELEMQKKNAEKQAMEDTKSDIGWGSQIRSYVLDDSRIKDLRTGVETRNTQAV LDGSLDQFIEASLKAGL" misc_feature complement(3200755..3201633) /gene="prfB" /locus_tag="STM3041" /note="This domain is found in peptide chain release factors; Region: PCRF; cl40670" /db_xref="CDD:477417" gene complement(3201955..3203704) /gene="recJ" /locus_tag="STM3042" /db_xref="GeneID:1254565" CDS complement(3201955..3203688) /gene="recJ" /locus_tag="STM3042" /EC_number="3.1.-.-" /note="5' --> 3' specific; Mg dependent; single-stranded-DNA-specific exonuclease RECJ. (SW:RECJ_SALTY)" /codon_start=1 /transl_table=11 /product="ssDNA exonuclease" /protein_id="NP_461958.1" /db_xref="GeneID:1254565" /translation="MKQQRQLRRREADETAELPADLPPLLRRLYASRGVRSARELERS VKGMLPWQQLSGIDNAVEILYNAFREGTRIIVVGDFDADGATSTALSVLGMRALGCDN ISYLVPNRFEDGYGLSPEVVDQAKARGAQLIVTVDNGISSHAGVAHAKTLGIPVIVTD HHLPGDTLPDAEAIINPNLRDCEFPSKSLAGVGVAFYLMLALRTFLRDKGWFDERNIA PPNLAELLDLVALGTVADVVPLDANNRILTWQGLSRIRAGKCRPGIKALLEISNRDPQ QLAASDLGFALGPRLNAAGRLDDMSVGVALLLCDNLGEARVLASELDALNQTRKEIEQ GMQAEALILCEKLERSSETLPGGLAMYHPEWHQGVVGILASRIKERFHRPVIAFAPAG DGTLKGSGRSIQGLHMRDALERLDTLYPDLMIKFGGHAMAAGLSLEEHKFEQFQQRFG ELVTEWLDPALLQGEVISDGPLSAAEMSMEVAQLLRDAGPWGQMFPEPLFDGRFRLLQ QRLVGERHLKVMVEPVGGGPLLDGIAFNIDTTCWPDNGVREVELAYKLDINEFRGNRS LQIIIDDIWPL" misc_feature complement(3201958..3203682) /gene="recJ" /locus_tag="STM3042" /note="single-stranded-DNA-specific exonuclease RecJ; Region: PRK11070" /db_xref="CDD:182944" gene complement(3203694..3204423) /gene="dsbC" /locus_tag="STM3043" /db_xref="GeneID:1254566" CDS complement(3203694..3204407) /gene="dsbC" /locus_tag="STM3043" /EC_number="5.3.4.1" /note="thiol:disulfide interchange protein DSBC precursor. (SW:DSBC_SALTY)" /codon_start=1 /transl_table=11 /product="protein disulfide isomerase II" /protein_id="NP_461959.1" /db_xref="GeneID:1254566" /translation="MKKRFMMFTLLAAVFSGVAHADDAAIRQSLAKLGVQSTEIQASP VAGMKTVLTHSGVLYVTDDGKHIIQGPMYDVSGAHPVNVTNKLLMSQLNALEKEMIVY KAPDEKHVITVFTDITCGYCHKLHEEMKDYNALGITVRYLAFPRQGLESQAEQDMKSI WCAKDKNKAFDDAMAGKGVKPASCDVNIADHYALGVQLGVSGTPAIVLSNGYVVPGYQ GPKEMKAFLDEHQKQTSGK" misc_feature complement(3203712..3204407) /gene="dsbC" /locus_tag="STM3043" /note="protein disulfide isomerase II DsbC; Provisional; Region: PRK10877" /db_xref="CDD:182802" misc_feature complement(order(3204189..3204272,3204279..3204296)) /gene="dsbC" /locus_tag="STM3043" /note="dimerization domain [polypeptide binding]; other site" /db_xref="CDD:239318" misc_feature complement(3204189..3204212) /gene="dsbC" /locus_tag="STM3043" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:239318" misc_feature complement(order(3204042..3204044,3204051..3204053)) /gene="dsbC" /locus_tag="STM3043" /note="catalytic residues [active]" /db_xref="CDD:239318" regulatory complement(3203699..3203704) /regulatory_class="ribosome_binding_site" /gene="dsbC" /locus_tag="STM3043" /note="putative RBS for recJ; RegulonDB:STMS1H003086" regulatory complement(3204418..3204423) /regulatory_class="ribosome_binding_site" /gene="dsbC" /locus_tag="STM3043" /note="putative RBS for dsbC; RegulonDB:STMS1H003087" gene complement(3204431..3205339) /gene="xerD" /locus_tag="STM3044" /db_xref="GeneID:1254567" CDS complement(3204431..3205327) /gene="xerD" /locus_tag="STM3044" /note="integrase/recombinase XERD. (SW:XERD_SALTY)" /codon_start=1 /transl_table=11 /product="site-specific recombinase" /protein_id="NP_461960.1" /db_xref="GeneID:1254567" /translation="MEQDLARIEQFLDALWLERNLAENTLSAYRRDLSMVVAWLHHRG KTLATAQADDLQTLLAERVEGGYKATSSARLLSAMRRFFQHLYREKYREDDPSAQLAS PKLPQRLPKDLSEAQVERLLQAPLIDQPLELRDKAMLEVLYATGLRVSELVGLTMSDI SLRQGVVRVIGKGNKERLVPLGEEAVYWLETYLEHGRPWLLNGVSIDVLFPSQRAQQM TRQTFWHRIKHYAVLAGIDSEKLSPHVLRHAFATHLLNHGADLRVVQMLLGHSDLSTT QIYTHVATERLRQLHQQHHPRA" misc_feature complement(3204434..3205327) /gene="xerD" /locus_tag="STM3044" /note="tyrosine recombinase; Region: xerD; PRK00283" /db_xref="CDD:234713" misc_feature complement(order(3204491..3204493,3204584..3204589, 3204596..3204598,3204884..3204886)) /gene="xerD" /locus_tag="STM3044" /note="active site" /db_xref="CDD:271179" regulatory complement(3205334..3205339) /regulatory_class="ribosome_binding_site" /gene="xerD" /locus_tag="STM3044" /note="putative RBS for xerD; RegulonDB:STMS1H003088" gene 3205420..3205961 /gene="fldB" /locus_tag="STM3045" /db_xref="GeneID:1254568" regulatory 3205420..3205425 /regulatory_class="ribosome_binding_site" /gene="fldB" /locus_tag="STM3045" /note="putative RBS for fldB; RegulonDB:STMS1H003089" CDS 3205440..3205961 /gene="fldB" /locus_tag="STM3045" /note="flavodoxin 2. (SW:FLAW_SALTY)" /codon_start=1 /transl_table=11 /product="flavodoxin 2" /protein_id="NP_461961.1" /db_xref="GeneID:1254568" /translation="MNMGLFYGSSTCYTEMAAEKIRDILGPELVTLHNLKDDAPALME QYDVLILGIPTWDFGEIQEDWEAVWEQLDDLNLEGKIVALYGMGDQLGYGEWFLDALG MLHDKLALKGVKFVGYWPTEGYEFTSNKPVIADGQLFVGLALDETNQYDLSDERIQTW CEQILGEMAEHYA" misc_feature 3205440..3205955 /gene="fldB" /locus_tag="STM3045" /note="flavodoxin FldB; Provisional; Region: PRK12359" /db_xref="CDD:183471" gene complement(3206014..3206441) /gene="ygfX" /locus_tag="STM3046" /db_xref="GeneID:1254569" CDS complement(3206014..3206427) /gene="ygfX" /locus_tag="STM3046" /note="similar to E. coli orf, hypothetical protein (AAC75934.1); Blastp hit to AAC75934.1 (135 aa), 83% identity in aa 1 - 131" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461962.1" /db_xref="GeneID:1254569" /translation="MVLWQSDLRVSWRAQWISLLIHGLVAAVILLMPWPLSYTPLWMI LLSLVVFDCVRSQRRINTCQGEIKLLMDGRLRWQGQDWTLLRPPWLLKSGMVLRLRAE SGRHQHLWLAADSMEEAEWRELRRILLQQPISGQH" misc_feature complement(3206032..3206424) /gene="ygfX" /locus_tag="STM3046" /note="Membrane-bound toxin component of toxin-antitoxin system; Region: Cpta_toxin; pfam07254" /db_xref="CDD:462123" gene complement(3206408..3206684) /gene="ygfY" /locus_tag="STM3047" /db_xref="GeneID:1254570" CDS complement(3206408..3206674) /gene="ygfY" /locus_tag="STM3047" /note="similar to E. coli orf, hypothetical protein (AAC75935.1); Blastp hit to AAC75935.1 (88 aa), 93% identity in aa 1 - 88" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461963.1" /db_xref="GeneID:1254570" /translation="MDIHNKARIHWACRRGMRELDISIMPFFEHEYDSLSDEEKRIFV RLLQSDDPDLFNWLMNHGKPADAELEQMVRLIQTRNRERGPVAI" misc_feature complement(3206411..3206626) /gene="ygfY" /locus_tag="STM3047" /note="FAD assembly factor SdhE; Region: PRK10878" /db_xref="CDD:182803" regulatory complement(3206436..3206441) /regulatory_class="ribosome_binding_site" /gene="ygfY" /locus_tag="STM3047" /note="putative RBS for ygfX; RegulonDB:STMS1H003090" regulatory complement(3206679..3206684) /regulatory_class="ribosome_binding_site" /gene="ygfY" /locus_tag="STM3047" /note="putative RBS for ygfY; RegulonDB:STMS1H003091" gene 3206911..3207904 /gene="ygfZ" /locus_tag="STM3048" /db_xref="GeneID:1254571" regulatory 3206911..3206916 /regulatory_class="ribosome_binding_site" /gene="ygfZ" /locus_tag="STM3048" /note="putative RBS for ygfZ; RegulonDB:STMS1H003092" CDS 3206924..3207904 /gene="ygfZ" /locus_tag="STM3048" /note="similar to E. coli orf, hypothetical protein (AAC75936.1); Blastp hit to AAC75936.1 (326 aa), 85% identity in aa 1 - 326" /codon_start=1 /transl_table=11 /product="putative aminomethyltransferase" /protein_id="NP_461964.1" /db_xref="GeneID:1254571" /translation="MAFISFPPRHPSSSARLPLTLIALDDWALSTITGVDSEKYIQGQ VTADVSQMTEQQHLLAAHCDAKGKMWSTLRLFRERDGFAWIERRSVLEAQLTELKKYA VFSKVVIAPDDERVLLGVAGFQARAALANVFSELPNSENQVVRDGASTLLWFEHPAER FLLVTDVATANMLTEKLHGEAELNNSQQWLALDIEAGIPVIDAANSGQFIPQATNLQA LGGISFKKGCYTGQEMVARAKFRGANKRALWLLAGKASRVPEAGEDLELQMGENWRRT GAILAATQLDDGQLLVQAVMNNDLEAESVFRVRDDANTLHIVPLPYSLEE" misc_feature 3206924..3207901 /gene="ygfZ" /locus_tag="STM3048" /note="putative global regulator; Reviewed; Region: PRK09559" /db_xref="CDD:236567" gene complement(3208020..3208691) /gene="yqfA" /locus_tag="STM3049" /db_xref="GeneID:1254572" CDS complement(3208020..3208679) /gene="yqfA" /locus_tag="STM3049" /note="similar to E. coli putative oxidoreductase (AAC75937.1); Blastp hit to AAC75937.1 (219 aa), 91% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="putative hemolysin" /protein_id="NP_461965.1" /db_xref="GeneID:1254572" /translation="MVQKPLMTQGYSLAEEIANSISHGIGLVFGIVGLVLLLVQAVEA NAGMTAIASYSLYGGSMILLFLASTLYHAIPHQRAKIWLKKFDHCAIYLLIAGTYTPF LLVGLDSPLARGLMIVIWSLALFGILFKLTIAHRFKVLSLVTYLAMGWLSLIVVYQLA IKLAIGGVTLLAVGGVVYSLGVIFYVCKRIPYNHAIWHGFVLGGSVCHFLAIYLYVGQ A" misc_feature complement(3208023..3208679) /gene="yqfA" /locus_tag="STM3049" /note="hemolysin; Provisional; Region: PRK15087" /db_xref="CDD:185044" regulatory complement(3208686..3208691) /regulatory_class="ribosome_binding_site" /gene="yqfA" /locus_tag="STM3049" /note="putative RBS for yqfA; RegulonDB:STMS1H003093" gene complement(3208843..3209169) /gene="yqfB" /locus_tag="STM3050" /db_xref="GeneID:1254573" CDS complement(3208843..3209154) /gene="yqfB" /locus_tag="STM3050" /note="similar to E. coli orf, hypothetical protein (AAC75938.1); Blastp hit to AAC75938.1 (103 aa), 88% identity in aa 1 - 103" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461966.1" /db_xref="GeneID:1254573" /translation="MQPNDITFFQRFQNDILAGRKTITIRDASESHFKAGDVLRVGRF EDDGYFCTIEVTGTSTVTLDTLNEKHAQQENMSLDELKRVIAEIYPNQTQFYVIDFKC L" misc_feature complement(3208846..3209151) /gene="yqfB" /locus_tag="STM3050" /note="hypothetical protein; Provisional; Region: PRK04980" /db_xref="CDD:179908" regulatory complement(3209164..3209169) /regulatory_class="ribosome_binding_site" /gene="yqfB" /locus_tag="STM3050" /note="putative RBS for yqfB; RegulonDB:STMS1H003094" gene 3209313..3210746 /gene="bglA" /locus_tag="STM3051" /db_xref="GeneID:1254574" CDS 3209313..3210746 /gene="bglA" /locus_tag="STM3051" /EC_number="3.2.1.86" /note="similar to E. coli 6-phospho-beta-glucosidase A; cryptic (AAC75939.1); Blastp hit to AAC75939.1 (479 aa), 95% identity in aa 3 - 479" /codon_start=1 /transl_table=11 /product="6-phospho-beta-glucosidase A" /protein_id="NP_461967.1" /db_xref="GeneID:1254574" /translation="MRKLTLPKDFLWGGAVAAHQVEGGWNKDGKGPSICDVLTGGAHG VPREITQNVVAGKYYPNHEAVDFYGHYKEDIRLFAEMGFKCFRTSIAWTRIFPNGDES QPNEAGLKFYDDMFDELLKYNIEPVITLSHFEMPLHLVQHYGGWTNRKVVDFFVRFAE VVFERYKHKVKYWMTFNEINNQRNWRAPLFGYCCSGVVYTEHENPEETMYQVLHHQFV ASALAVKAARRINPQMKVGCMLAMVALYPFSCKPEDVMFAQESMRERYVFTDVQLRGY YPSYVLNEWERRGFNIKMEDGDLEVLREGTCDYLGFSYYMTNAVKAEGGSGDAISGFE GSVPNPYVKASDWGWQIDPVGLRYSLCELYERYQKPLFIVENGFGAYDKVEEDGSIND DYRIDYLRAHIEEMKKAVTYDGVDLMGYTPWGCIDCVSFTTGQYSKRYGFIYVNKHDD GTGDMSRSRKKSFNWYKEVIASNGEKL" misc_feature 3209313..3210743 /gene="bglA" /locus_tag="STM3051" /note="6-phospho-beta-glucosidase BglA; Provisional; Region: PRK15014" /db_xref="CDD:184975" gene complement(3210794..3211694) /locus_tag="STM3052" /db_xref="GeneID:1254575" CDS complement(3210794..3211687) /locus_tag="STM3052" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_461968.1" /db_xref="GeneID:1254575" /translation="MKRFIFLPLMTYFLLMNAMAANGENNPSNLLGAPVNTAISGGSV LPEGKLLTAMNSSFRDKDHQIEGHGSPDVYSQIWLLKIRYGLTDRLELSTVGSYINNK RDNLSPEHIEGMGDQSVGVNYALMSQRRGDPFWVTVGGAVLLPTGQDGDNHLPGNSAW GGRVTLTLTKLFTPNIKGDMGFVYQGPFERGNQDVKRGNEFQWNTQVRYMFSDLPLDL GLESAYSNNASGTKKLSNGSVINNHSGTTEWVVGPSFNIAVDSLKLWFGAGAFFPVMQ EAKSPTKMEDVRWEFKIGKTW" misc_feature complement(<3210992..3211444) /locus_tag="STM3052" /note="Putative MetA-pathway of phenol degradation; Region: Phenol_MetA_deg; cl01768" /db_xref="CDD:470334" regulatory complement(3211689..3211694) /regulatory_class="ribosome_binding_site" /locus_tag="STM3052" /note="putative RBS for STM3052; RegulonDB:STMS1H003095" gene complement(3212143..3215031) /gene="gcvP" /locus_tag="STM3053" /db_xref="GeneID:1254576" CDS complement(3212143..3215016) /gene="gcvP" /locus_tag="STM3053" /EC_number="1.4.4.2" /note="glycine decarboxylase; similar to E. coli glycine decarboxylase, P protein of glycine cleavage system (AAC75941.1); Blastp hit to AAC75941.1 (957 aa), 96% identity in aa 1 - 957" /codon_start=1 /transl_table=11 /product="glycine cleavage complex protein P" /protein_id="NP_461969.1" /db_xref="GeneID:1254576" /translation="MTQTLSQLENRGAFIERHIGPDAAQQQEMLNAVGAESLNALTGQ IVPKDIQLATPPQVGEAATEYAALAELKAIAGRNKRFTSYIGMGYTAVQLPPVILRNM LENPGWYTAYTPYQPEVSQGRLEALLNFQQVTLDLTGLDMASASLLDEATAAAEAMAM AKRVSKLKNANRFFVASDVHPQTLDVVRTRAETFGFDVIVDDAAKALDHQDVFGVLLQ QVGTTGEIHDYSALITELKSRKVVVSVAADFMALVLLTAPGKQGADIVFGSAQRFGVP MGYGGPHAAFFAAKDEFKRSMPGRIIGVSKDAAGNTALRMAMQTREQHIRREKANSNI CTSQVLLANIASLYAVYHGPVGLKRIANRIHRLTDILAAGLQQKGLKLRHAHYFDTLC VEVADKAAVLARAEAAEINLRSDIHNAVGITLDETTTRENVAQLFNVLLGDSHGLNIE TLDKDVALDSRSIQQSMLRDDAILTHPVFNRYHSETEMMRYMHSLERKDLALNQAMIP LGSCTMKLNAAAEMIPITWPEFAELHPFCPPEQAEGYHQMISQLSDWLVKLTGYDAVC MQPNSGAQGEYAGLLAIRHYHESRNEGHRDICLIPASAHGTNPASAHMAGMQVVVVAC DKNGNIDLDDLRAKAEQHAANLSCIMVTYPSTHGVYEETIREVCEVVHQFGGQVYLDG ANMNAQVGITSPGFIGADVSHLNLHKTFCIPHGGGGPGMGPIGVKAHLAPFVPGHSVV QIEGMLTRQGAVSAAPFGSASILPISWMYIRMMGAEGLKQASQVAILNANYIASRLKD AYPVLYTGRDGRVAHECILDIRPLKEETGISELDIAKRLIDYGFHAPTMSFPVAGTLM VEPTESEGKAELDRFIDAMLAIRAEIDQVKAGVWPLEDNPLVNAPHIQSELVAEWAHP YSREVAVFPAGVADKYWPTVKRLDDVYGDRNLFCSCVPISDYQ" misc_feature complement(3212167..3214968) /gene="gcvP" /locus_tag="STM3053" /note="glycine dehydrogenase (decarboxylating); Region: gcvP; TIGR00461" /db_xref="CDD:273089" regulatory complement(3215026..3215031) /regulatory_class="ribosome_binding_site" /gene="gcvP" /locus_tag="STM3053" /note="putative RBS for gcvP; RegulonDB:STMS1H003096" gene complement(3215179..3215582) /gene="gcvH" /locus_tag="STM3054" /db_xref="GeneID:1254577" CDS complement(3215179..3215568) /gene="gcvH" /locus_tag="STM3054" /note="carrier of aminomethyl moiety via covalently bound lipoyl cofactor; similar to E. coli in glycine cleavage complex, carrier of aminomethyl moiety via covalently bound lipoyl cofactor (AAC75942.1); Blastp hit to AAC75942.1 (129 aa), 99% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="glycine cleavage complex protein H" /protein_id="NP_461970.1" /db_xref="GeneID:1254577" /translation="MSNVPAELKYSKEHEWLRKEADGTYTVGITEHAQELLGDMVFVD LPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYTGGWI FKIKASDESELESLLDATAYEALLEDE" misc_feature complement(3215182..3215565) /gene="gcvH" /locus_tag="STM3054" /note="Glycine cleavage system protein H (lipoate-binding) [Amino acid transport and metabolism]; Region: GcvH; COG0509" /db_xref="CDD:440275" regulatory complement(3215577..3215582) /regulatory_class="ribosome_binding_site" /gene="gcvH" /locus_tag="STM3054" /note="putative RBS for gcvH; RegulonDB:STMS1H003097" gene complement(3215594..3216838) /gene="gcvT" /locus_tag="STM3055" /db_xref="GeneID:1254578" CDS complement(3215594..3216688) /gene="gcvT" /locus_tag="STM3055" /EC_number="2.1.2.10" /note="aminomethyltransferase; tetrahydrofolate-dependent; similar to E. coli aminomethyltransferase (T protein; tetrahydrofolate-dependent) of glycine cleavage system (AAC75943.1); Blastp hit to AAC75943.1 (364 aa), 94% identity in aa 1 - 364" /codon_start=1 /transl_table=11 /product="glycine cleavage complex protein T" /protein_id="NP_461971.1" /db_xref="GeneID:1254578" /translation="MAQQTPLYEQHTLCGARMVDFHGWMMPLHYGSQLDEHHAVRTDA GMFDVSHMTIVDLHGSRTREFLRYLLANDVAKLTKTGKALYSGMLNASGGVIDDLIVY YFTEDFFRLVVNSATREKDLSWITQHAEPYAIDITVRDDLSLIAVQGPNAQEKAATLF TDQQRHAVEGMKPFFGVQAGDLFIATTGYTGEAGYEIAMPNEKAADFWRALVEAGVKP CGLGARDTLRLEAGMNLYGQEMDEGISPLAANMGWTIAWEPADRDFIGREALEMQREK GHEQLVGLVMTEKGVLRNELPVRFTDAQGNQQEGIITSGTFSPTLGYSIALARVPAGI GETAIVQIRNREMPVKVTKPVFVRNGKAVA" misc_feature complement(3215603..3216688) /gene="gcvT" /locus_tag="STM3055" /note="glycine cleavage system aminomethyltransferase GcvT; Region: gcvT; PRK00389" /db_xref="CDD:234742" regulatory complement(3216692..3216697) /regulatory_class="ribosome_binding_site" /gene="gcvT" /locus_tag="STM3055" /note="putative RBS for gcvT; RegulonDB:STMS1H003098" protein_bind complement(3216708..3216738) /gene="gcvT" /locus_tag="STM3055" /note="putative binding site for GcvA, RegulonDB: STMS1H000200" /bound_moiety="GcvA" protein_bind complement(3216734..3216764) /gene="gcvT" /locus_tag="STM3055" /note="putative binding site for GcvA, RegulonDB: STMS1H000199" /bound_moiety="GcvA" protein_bind complement(3216778..3216794) /gene="gcvT" /locus_tag="STM3055" /note="putative binding site for PurR, RegulonDB: STMS1H000355" /bound_moiety="PurR" regulatory complement(3216811..3216819) /regulatory_class="minus_10_signal" /gene="gcvT" /locus_tag="STM3055" /note="putative -10_signal for gcvT; RegulonDB:STMLTH004572" regulatory complement(3216830..3216838) /regulatory_class="minus_35_signal" /gene="gcvT" /locus_tag="STM3055" /note="putative -35_signal for gcvT; RegulonDB:STMLTH004572" protein_bind complement(3216916..3216946) /note="putative binding site for GcvA, RegulonDB: STMS1H000201" /bound_moiety="GcvA" protein_bind complement(3216938..3216952) /note="putative binding site for Lrp, RegulonDB: STMS1H000251" /bound_moiety="Lrp" gene complement(3217143..3218357) /gene="visC" /locus_tag="STM3056" /db_xref="GeneID:1254579" CDS complement(3217143..3218345) /gene="visC" /locus_tag="STM3056" /note="similar to E. coli orf, hypothetical protein (AAC75944.1); Blastp hit to AAC75944.1 (400 aa), 87% identity in aa 1 - 400" /codon_start=1 /transl_table=11 /product="putative monooxygenase" /protein_id="NP_461972.1" /db_xref="GeneID:1254579" /translation="MQSVDVAIVGGGMVGLAVACGLQGSGLRVAVLDHVVPQPLANDA PPQLRVSAINAASEKLLTRLGVWSNIVARRASCYHGMEVWDKDSFGRITFDDASMGYS HLGHIVENSVIHYALWQKAQQAADITLMAPAELQQVAWGENDAFLTLKDGAMLTARLV IAADGANSWLRNKADIPLTFWDYRHHALVATIRTEEPHGAVARQVFHGEGILAFLPLS DPHLCSIVWSLSPQDAERMQQSGDEAFNQALTIAFDNRLGLCRLESERQVFPLTGRYA RQFAAHRLALVGDAAHTIHPLAGQGVNLGFMDAAELVDDLRRLQRQGKDIGQHLYLRR YERSRKHSAAMMLAGMQGFRDLFAGENPAKKLLRDIGLKLADTLPGVKPQLLRQAMGL NDLPQWLR" misc_feature complement(3217146..3218345) /gene="visC" /locus_tag="STM3056" /note="oxidoreductase; Provisional; Region: PRK08013" /db_xref="CDD:236139" regulatory complement(3218352..3218357) /regulatory_class="ribosome_binding_site" /gene="visC" /locus_tag="STM3056" /note="putative RBS for visC; RegulonDB:STMS1H003099" gene complement(3218471..3219663) /gene="ubiH" /locus_tag="STM3057" /db_xref="GeneID:1254580" CDS complement(3218471..3219649) /gene="ubiH" /locus_tag="STM3057" /EC_number="1.14.13.-" /note="similar to E. coli 2-octaprenyl-6-methoxyphenol--> 2-octaprenyl-6-methoxy-1, 4-benzoquinone (AAC75945.1); Blastp hit to AAC75945.1 (392 aa), 79% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="2-octaprenyl-6-methoxyphynol hydroxylase" /protein_id="NP_461973.2" /db_xref="GeneID:1254580" /translation="MSVIIVGGGMAGATLALAISQFSHGTLPVHLIEAKAPEADGHPG FDARAIALAAGTCQQLARIGVWQAISDCATAINTVHVSDRGHAGFVTLDAQDYSLAAL GHVAELHDIGLRLFALLRKAPGVTLHCPERVASVSRTQQQVNVTLENGNVIAGSVLVA ANGTHSALASACGVDWHQEPYEQLAVIANVATAIPHQGRAFERFTPNGPLAMLPMSHG RCSLVWCHPLDQRDEVLSWSDAQFCHALQAAFGWRLGRITQAGKRSAYPLALTTAAKV FSHRTVVVGNAAQTLHPIAGQGFNLGLRDVMSLAETLVAAQDAGEDIGAWHVLSRYQQ RRQVDRDTTIGVTNGLVHLFANRWAPLVIGRNIGLMAMELLPPARDALAQRTLGWVAR " misc_feature complement(3218474..3219649) /gene="ubiH" /locus_tag="STM3057" /note="2-octaprenyl-6-methoxyphenyl hydroxylase; Validated; Region: PRK05732" /db_xref="CDD:235584" gene complement(3219646..3220976) /gene="pepP" /locus_tag="STM3058" /db_xref="GeneID:1254581" CDS complement(3219646..3220962) /gene="pepP" /locus_tag="STM3058" /EC_number="3.4.11.9" /note="similar to E. coli proline aminopeptidase P II (AAC75946.1); Blastp hit to AAC75946.1 (441 aa), 91% identity in aa 4 - 441" /codon_start=1 /transl_table=11 /product="proline aminopeptidase P II" /protein_id="NP_461974.1" /db_xref="GeneID:1254581" /translation="MTQQEYQRRRQALLAQMQPGSAALIFAAPEATRSADSEYPYRQS SDFWYFTGFNEPEAVLVLIKSDDTHNHSVLFNRVRDLTAEIWFGRRLGQDAAPEKLGV DRALAFSEINQQLFQLLNGLDVVYHAQGEYAYADEIVLAALEKLRKGSRQNLTAPATM TDWRPIVHEMRLFKSPEEIAVLRRAGEISALAHIRAMEKCRPGMFEYQLEGEIHHEFN RHGARYPSYNTIVGSGENGCILHYTENESEMRDGDLVLIDAGCEYKGYAGDITRTFPV NGKFTLAQREIYDIVLESLETSLRLFRPGTSIQEVTGEVVRIMITGLVKLGILQGEVD QLIAENAHRPFFMHGLSHWLGLDVHDVGVYGPDRSRILEPGMVLTVEPGLYIAPDADV PEAYRGIGVRIEDDIVITETGNENLTAGVVKKADDIEALMAAARQQ" misc_feature complement(3219649..3220962) /gene="pepP" /locus_tag="STM3058" /note="proline aminopeptidase P II; Provisional; Region: PRK10879" /db_xref="CDD:182804" regulatory complement(3219658..3219663) /regulatory_class="ribosome_binding_site" /gene="ubiH" /locus_tag="STM3057" /note="putative RBS for ubiH; RegulonDB:STMS1H003101" regulatory complement(3220971..3220976) /regulatory_class="ribosome_binding_site" /gene="pepP" /locus_tag="STM3058" /note="putative RBS for pepP; RegulonDB:STMS1H003102" gene complement(3220988..3221572) /gene="ygfB" /locus_tag="STM3059" /db_xref="GeneID:1254582" CDS complement(3220988..3221572) /gene="ygfB" /locus_tag="STM3059" /note="similar to E. coli orf, hypothetical protein (AAC75947.1); Blastp hit to AAC75947.1 (194 aa), 93% identity in aa 1 - 194" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461975.3" /db_xref="GeneID:1254582" /translation="MLMSIQNEMPGYNEMNRFLNQQGAGLTPAEMHGLISGMICGGNN DSSWQPLLHDLTNEGLAFGHELAQALRKMHAATSDALEDDGFLFQLYLPEGDDVSVFD RADALAGWVNHFLLGLGVTQPKLDKVTGETGEAIDDLRNIAQLGYDESEDQEELEMSL EEIIEYVRVAALLCHDTFTRQQPTAPEVRKPTLH" misc_feature complement(3220991..3221563) /gene="ygfB" /locus_tag="STM3059" /note="hypothetical protein; Reviewed; Region: PRK01736" /db_xref="CDD:234976" gene 3221721..3222062 /gene="ygfE" /locus_tag="STM3060" /db_xref="GeneID:1254583" regulatory 3221721..3221726 /regulatory_class="ribosome_binding_site" /gene="ygfE" /locus_tag="STM3060" /note="putative RBS for ygfE; RegulonDB:STMS1H003103" CDS 3221733..3222062 /gene="ygfE" /locus_tag="STM3060" /note="similar to E. coli orf, hypothetical protein (AAC75948.1); Blastp hit to AAC75948.1 (109 aa), 96% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_461976.1" /db_xref="GeneID:1254583" /translation="MSAQPVDIQIFGRSLRVNCPPDQRDALNQAADDLNQRLQDLKVR TRVTNTEQLVFIAALNISYELTQEKAKTRDYAASMEQRIRMLQQTIEQALLDQGRITE KTGQNFE" misc_feature 3221733..3222059 /gene="ygfE" /locus_tag="STM3060" /note="cell division protein ZapA; Region: PRK10972" /db_xref="CDD:182874" gene 3222342..3222904 /gene="ygfA" /locus_tag="STM3061" /db_xref="GeneID:1254584" regulatory 3222342..3222347 /regulatory_class="ribosome_binding_site" /gene="ygfA" /locus_tag="STM3061" /note="putative RBS for ygfA; RegulonDB:STMS1H003104" CDS 3222356..3222904 /gene="ygfA" /locus_tag="STM3061" /note="similar to E. coli putative ligase (AAC75949.1); Blastp hit to AAC75949.1 (182 aa), 86% identity in aa 1 - 182" /codon_start=1 /transl_table=11 /product="putative ligase" /protein_id="NP_461977.1" /db_xref="GeneID:1254584" /translation="MIRQRRRALTPEQQRRFGQQAAARMLSFPPVVMAHTVAVFLSFD GELDTQPLIEQLWRAGKRVYLPVLHPFSPGNLLFLHYYPQSVLVTNRLKIQEPRLDVR DVLPLAKLDVLVTPLVAFDEDGQRLGMGGGFYDRTLQNWQQHKILPVGYAHDCQLVEK LPVKEWDIPLPAVVTPSKIWEW" misc_feature 3222356..3222901 /gene="ygfA" /locus_tag="STM3061" /note="5-formyltetrahydrofolate cyclo-ligase family protein; Provisional; Region: PRK10333" /db_xref="CDD:182385" gene complement(3223285..3224530) /gene="serA" /locus_tag="STM3062" /db_xref="GeneID:1254585" CDS complement(3223285..3224517) /gene="serA" /locus_tag="STM3062" /EC_number="1.1.1.95" /note="similar to E. coli D-3-phosphoglycerate dehydrogenase (AAC75950.1); Blastp hit to AAC75950.1 (410 aa), 96% identity in aa 1 - 410" /codon_start=1 /transl_table=11 /product="D-3-phosphoglycerate dehydrogenase" /protein_id="NP_461978.1" /db_xref="GeneID:1254585" /translation="MAKVSLEKDKIKFLLVEGVHQKALESLRAAGYTNIEYHKGALDA EQLKASIRDAHFIGLRSRTHLTEEVINAAEKLVAIGCFCIGTNQVDLNAAAKRGIPVF NAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLAAGSFEARGKKLGIIGYG HIGTQLGILAESLGMHVYFYDIENKLPLGNATQVQHLSELLNMSDVVSLHVPENASTK NMMGAKEIALMKPGSLLINAARGTVVDIPALCDALATKHLAGAAIDVFPTEPATNSDP FTSPLCEFDNVILTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAVNFPEVSLPL HGGRRLMHIHENRPGVLTALNQIFAEQGVNIAAQYLQTSARMGYVVIDIEADGDVAEK ALLAMKAIPGTIRARLLY" misc_feature complement(3223288..3224517) /gene="serA" /locus_tag="STM3062" /note="phosphoglycerate dehydrogenase; Region: PRK11790" /db_xref="CDD:236985" misc_feature complement(order(3224194..3224196,3224263..3224271, 3224335..3224340)) /gene="serA" /locus_tag="STM3062" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:240653" misc_feature complement(order(3223633..3223638,3223642..3223644, 3223726..3223728,3223798..3223806,3223858..3223860, 3223867..3223872,3223882..3223890,3223963..3223965, 3223972..3223980,3224032..3224046,3224182..3224184, 3224194..3224196,3224200..3224202,3224266..3224268)) /gene="serA" /locus_tag="STM3062" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:240653" misc_feature complement(order(3223615..3223617,3223621..3223632, 3223636..3223659,3223666..3223668,3223672..3223677, 3223687..3223692,3223699..3223701,3223708..3223713, 3223720..3223722,3223999..3224004,3224062..3224064, 3224068..3224103,3224107..3224109,3224113..3224118, 3224125..3224130,3224137..3224139,3224143..3224145, 3224152..3224157,3224161..3224169,3224173..3224178, 3224185..3224190)) /gene="serA" /locus_tag="STM3062" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:240653" regulatory complement(3224525..3224530) /regulatory_class="ribosome_binding_site" /gene="serA" /locus_tag="STM3062" /note="putative RBS for serA; RegulonDB:STMS1H003105" gene complement(3224783..3225457) /gene="rpiA" /locus_tag="STM3063" /db_xref="GeneID:1254586" CDS complement(3224783..3225442) /gene="rpiA" /locus_tag="STM3063" /EC_number="5.3.1.6" /note="similar to E. coli ribosephosphate isomerase, constitutive (AAC75951.1); Blastp hit to AAC75951.1 (219 aa), 98% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="constitutive ribosephosphate isomerase" /protein_id="NP_461979.1" /db_xref="GeneID:1254586" /translation="MTQDELKKAVGWAALQYVQPGTIVGVGTGSTAAHFIDALGTMKG QIEGAVSSSDASTEKLKGLGIHVFDLNEVDSLGIYVDGADEINGHMQMIKGGGAALTR EKIIASVAEKFICIADASKQVDILGKFPLPVEVIPMARSAVARQLVKLGGRPEYRQNV VTDNGNVILDVYGMEILDPIALENAINAIPGVVTVGLFANRGADVALIGTPDGVKTIV K" misc_feature complement(3224792..3225442) /gene="rpiA" /locus_tag="STM3063" /note="ribose-5-phosphate isomerase RpiA; Region: PRK00702" /db_xref="CDD:234816" misc_feature complement(order(3224942..3224944,3224954..3224956, 3224960..3224962,3224969..3224974,3225152..3225157, 3225236..3225238,3225242..3225244,3225269..3225274, 3225281..3225283,3225359..3225361)) /gene="rpiA" /locus_tag="STM3063" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:238692" misc_feature complement(order(3225080..3225082,3225134..3225136, 3225152..3225163,3225191..3225193,3225197..3225202, 3225350..3225355,3225359..3225361)) /gene="rpiA" /locus_tag="STM3063" /note="active site" /db_xref="CDD:238692" misc_feature complement(order(3224864..3224866,3224879..3224884, 3225008..3225010,3225017..3225025,3225029..3225034, 3225116..3225118,3225137..3225139,3225221..3225223, 3225233..3225235)) /gene="rpiA" /locus_tag="STM3063" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238692" regulatory complement(3225452..3225457) /regulatory_class="ribosome_binding_site" /gene="rpiA" /locus_tag="STM3063" /note="putative RBS for rpiA; RegulonDB:STMS1H003106" gene 3225578..3226489 /gene="iciA" /locus_tag="STM3064" /db_xref="GeneID:1254587" regulatory 3225578..3225583 /regulatory_class="ribosome_binding_site" /gene="iciA" /locus_tag="STM3064" /note="putative RBS for iciA; RegulonDB:STMS1H003107" CDS 3225596..3226489 /gene="iciA" /locus_tag="STM3064" /note="LysR family; similar to E. coli replication initiation inhibitor, binds to 13-mers at oriC (AAC75953.1); Blastp hit to AAC75953.1 (297 aa), 97% identity in aa 1 - 297; transcriptional regulator of dnaA and argK" /codon_start=1 /transl_table=11 /product="inhibitor of replication initiation" /protein_id="NP_461980.1" /db_xref="GeneID:1254587" /translation="MKRPDYRTLQALDAVIRERGFERAAQKLCITQSAVSQRIKQLEN MFGQPLLVRTVPPRPTEQGQKLLALLRQVELLEEEWLGDEQTGSTPLLLSLAVNADSL ATWLLPALAPVLADSPIRLNLQVEDETRTQERLRRGEVVGAVSIQHQALPSCLVDKLG ALDYLFVASKPFAERYFPNGVTRSSLLKAPAVAFDHLDDMHQAFLQQNFDLPPGSVPC HIVNSSEAFVQLARQGTTCCMIPHLQIEKELESGELINLTPGLLQRRMLYWHRFAPES RMMRKVTDALLEYGHKVLRQD" misc_feature 3225602..3226480 /gene="iciA" /locus_tag="STM3064" /note="ArgP/LysG family DNA-binding transcriptional regulator; Region: PRK03635" /db_xref="CDD:235144" gene complement(3226755..3227512) /gene="yggE" /locus_tag="STM3065" /db_xref="GeneID:1254588" CDS complement(3226755..3227501) /gene="yggE" /locus_tag="STM3065" /note="similar to E. coli putative actin (AAC75959.1); Blastp hit to AAC75959.1 (246 aa), 88% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="putative periplasmic immunogenic protein" /protein_id="NP_461981.1" /db_xref="GeneID:1254588" /translation="MKFKVMALAALVGLSAMSAQASELPEGPHIVTSGTASVDAVPDI ATLAIEVNVAAKDAATAKKQADERVAQYLSFLEQNQIAKKDISAANLRTQPDYDYQNG KSILKGYRAVRTVEVTLRQLDKLNSLLDGALKAGLNEIRSVSLGVAQPDAYKDKARKA AIDDAIHQAQALAAGFNSKLGPVYSVRYHVSNYQPSPVVRMMKAADAAPVSAQETYEQ PTIQFDDQVDVVFQLEPGTGQTSTTAASTQ" misc_feature complement(3226797..3227480) /gene="yggE" /locus_tag="STM3065" /note="oxidative stress defense protein; Provisional; Region: PRK11087" /db_xref="CDD:236840" regulatory complement(3227507..3227512) /regulatory_class="ribosome_binding_site" /gene="yggE" /locus_tag="STM3065" /note="putative RBS for yggE; RegulonDB:STMS1H003108" gene complement(3227595..3228243) /gene="yggA" /locus_tag="STM3066" /db_xref="GeneID:1254589" CDS complement(3227595..3228230) /gene="yggA" /locus_tag="STM3066" /note="similar to E. coli orf, hypothetical protein (AAC75960.1); Blastp hit to AAC75960.1 (211 aa), 90% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="putative LYSE family amino acid transport protein" /protein_id="NP_461982.1" /db_xref="GeneID:1254589" /translation="MISYYFQGFALGAAMILPLGPQNAFVMNQGIRRQYHLMIALLCA LSDLVLISAGIFGGSALLMQSPWLLALVTWGGVAFLLWYGFGALKTAMSSNLELASAE VMKQGRWKIIATMLAVTWLNPHVYLDTFVVLGSLGGQLAMEPKRWFALGTISASFLWF FGLALLAAWLAPRLRTAKAQRIINILVGVVMWLIAFQLAREGVAHMHALFN" misc_feature complement(3227610..3228230) /gene="yggA" /locus_tag="STM3066" /note="arginine exporter ArgO; Region: PRK09304" /db_xref="CDD:236463" regulatory complement(3228238..3228243) /regulatory_class="ribosome_binding_site" /gene="yggA" /locus_tag="STM3066" /note="putative RBS for yggA; RegulonDB:STMS1H003109" gene complement(3228430..3229302) /gene="yggB" /locus_tag="STM3067" /db_xref="GeneID:1254590" CDS complement(3228430..3229290) /gene="yggB" /locus_tag="STM3067" /note="involved in stability of MscS mechanosensitive channel; similar to E. coli putative transport protein (AAC75961.1); Blastp hit to AAC75961.1 (286 aa), 91% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_461983.1" /db_xref="GeneID:1254590" /translation="MEDLNVVDSINGAGTWLVRNQALLLSYAVNIVAAIAIIIIGLIV ARVISNTVNRLMRARHIDATVADFLSALVRYGVIAFTLIAALGRVGVQTASVIAVLGA AGLAVGLALQGSLSNLAAGVLLVMFRPFRAGEYVDLGGVAGTVLNVQIFSTTMRAVDG KIIVIPNGKIIAGNIINYSREPVRRNEFIIGVAYDSDIDQVKQLLTTIIESDDRILKD REMTVRLNELGASSINFVVRVWSKSSDLQNVYWDVLERIKREFDAAGISFPYPQMDVN FKRVKDNAAE" misc_feature complement(3228433..3229290) /gene="yggB" /locus_tag="STM3067" /note="small-conductance mechanosensitive channel MscS; Region: PRK10334" /db_xref="CDD:182386" regulatory complement(3229297..3229302) /regulatory_class="ribosome_binding_site" /gene="yggB" /locus_tag="STM3067" /note="putative RBS for yggB; RegulonDB:STMS1H003110" gene complement(3229517..3230610) /gene="fba" /locus_tag="STM3068" /db_xref="GeneID:1254591" CDS complement(3229517..3230596) /gene="fba" /locus_tag="STM3068" /EC_number="4.1.2.13" /note="similar to E. coli fructose-bisphosphate aldolase, class II (AAC75962.1); Blastp hit to AAC75962.1 (359 aa), 98% identity in aa 1 - 359" /codon_start=1 /transl_table=11 /product="fructose-bisphosphate aldolase" /protein_id="NP_461984.1" /db_xref="GeneID:1254591" /translation="MSKIFDFVKPGVITGDDVQKVFQVAKENNFALPAVNCVGTDSIN AVLETAAKVKAPVIVQFSNGGASFIAGKGVKTDVPQGAAILGAISGAHHVHQMAEHYG VPVILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLHENIEICSK YLARMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFT IAASFGNVHGVYKPGNVVLTPTILRDSQDYVSKKHNLPHNSLNFVFHGGSGSTAQEIK DSVSYGVVKMNIDTDTQWATWEGVLNYYKENEAYLQGQLGNPKGEDQPNKKYYDPRVW LRAGQTSMIARLEKAFKELNAIDVL" misc_feature complement(3229520..3230569) /gene="fba" /locus_tag="STM3068" /note="fructose-bisphosphate aldolase; Provisional; Region: PRK09197" /db_xref="CDD:236406" misc_feature complement(order(3229727..3229732,3229736..3229738, 3229793..3229795,3229799..3229804,3229907..3229909, 3229913..3229921,3230048..3230059,3230066..3230068, 3230072..3230074,3230162..3230164,3230264..3230269, 3230489..3230491)) /gene="fba" /locus_tag="STM3068" /note="active site" /db_xref="CDD:238476" misc_feature complement(order(3229685..3229687,3229694..3229696, 3229706..3229708,3229715..3229720,3229724..3229729, 3230048..3230050,3230306..3230311,3230318..3230320, 3230330..3230332,3230387..3230395,3230402..3230404, 3230465..3230467,3230474..3230482)) /gene="fba" /locus_tag="STM3068" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238476" misc_feature complement(order(3229802..3229804,3229916..3229918, 3230051..3230053,3230072..3230074,3230162..3230164, 3230264..3230266)) /gene="fba" /locus_tag="STM3068" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:238476" misc_feature complement(order(3229793..3229795,3229799..3229801, 3229907..3229909,3229913..3229915,3229919..3229921)) /gene="fba" /locus_tag="STM3068" /note="Na+ binding site [ion binding]; other site" /db_xref="CDD:238476" regulatory complement(3230605..3230610) /regulatory_class="ribosome_binding_site" /gene="fba" /locus_tag="STM3068" /note="putative RBS for fba; RegulonDB:STMS1H003111" gene complement(3230698..3231872) /gene="pgk" /locus_tag="STM3069" /db_xref="GeneID:1254592" CDS complement(3230698..3231861) /gene="pgk" /locus_tag="STM3069" /EC_number="2.7.2.3" /note="similar to E. coli phosphoglycerate kinase (AAC75963.1); Blastp hit to AAC75963.1 (387 aa), 97% identity in aa 1 - 387" /codon_start=1 /transl_table=11 /product="phosphoglycerate kinase" /protein_id="NP_461985.1" /db_xref="GeneID:1254592" /translation="MSVIKMTDLDLAGKRVFIRADLNVPVKEGKVTSDARIRASLPTI ELALKQGAKVMVTSHLGRPTEGEYNEEFSLLPVVNYLKDKLSNPVRLVKDYLDGVDVA EGELVVLENVRFNKGEKKDDEALSKKYAALCDVFVMDAFGTAHRAQASTHGIGKFADV ACAGPLLAAELDALGKALKEPARPMVAIVGGSKVSTKLTVLDSLSKIADQLIVGGGIA NTFVAAQGHSVGKSLYEADLVDEAKRLLTTCDIPVPTDVRVATEFSETAPATLKSVND VKEDEQILDIGDASAQQLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEERAKK" misc_feature complement(3230713..3231855) /gene="pgk" /locus_tag="STM3069" /note="phosphoglycerate kinase; Provisional; Region: pgk; PRK00073" /db_xref="CDD:234613" misc_feature complement(order(3231523..3231525,3231685..3231687, 3231754..3231756,3231793..3231795,3231799..3231801)) /gene="pgk" /locus_tag="STM3069" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238195" misc_feature complement(order(3230779..3230787,3231319..3231330)) /gene="pgk" /locus_tag="STM3069" /note="hinge regions; other site" /db_xref="CDD:238195" misc_feature complement(order(3230833..3230841,3230920..3230931, 3230935..3230937,3230941..3230943,3231013..3231015, 3231214..3231216)) /gene="pgk" /locus_tag="STM3069" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:238195" misc_feature complement(3230836..3230838) /gene="pgk" /locus_tag="STM3069" /note="catalytic site [active]" /db_xref="CDD:238195" regulatory complement(3231867..3231872) /regulatory_class="ribosome_binding_site" /gene="pgk" /locus_tag="STM3069" /note="putative RBS for pgk; RegulonDB:STMS1H003112" gene complement(3231883..3233099) /gene="epd" /locus_tag="STM3070" /db_xref="GeneID:1254593" CDS complement(3231883..3232929) /gene="epd" /locus_tag="STM3070" /EC_number="1.2.1.-" /note="similar to E. coli D-erythrose 4-phosphate dehydrogenase (AAC75964.1); Blastp hit to AAC75964.1 (339 aa), 94% identity in aa 1 - 339" /codon_start=1 /transl_table=11 /product="D-erythrose 4-phosphate dehydrogenase" /protein_id="NP_461986.1" /db_xref="GeneID:1254593" /translation="MTVRIAINGFGRIGRNVVRALYESGRRAEITVVAINELADAAGM AHLLKYDTSHGRFAWEVRHEREQLFVGDDVIRILHERTLADLPWRELGVDVVLDCTGV YGNREHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAEHRIVSNASCTTNCI IPVIKLLDDAYGIESGTVTTIHSAMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLAAG ITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIV DYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLDTTLAMA AVGFRLDASASTKL" misc_feature complement(3231919..3232926) /gene="epd" /locus_tag="STM3070" /note="erythrose 4-phosphate dehydrogenase; Provisional; Region: PRK13535" /db_xref="CDD:184122" regulatory complement(3232934..3232939) /regulatory_class="ribosome_binding_site" /gene="epd" /locus_tag="STM3070" /note="putative RBS for epd; RegulonDB:STMS1H003113" regulatory complement(3233075..3233083) /regulatory_class="minus_10_signal" /gene="epd" /locus_tag="STM3070" /note="putative -10_signal for epd; RegulonDB:STMLTH004573" regulatory complement(3233091..3233099) /regulatory_class="minus_35_signal" /gene="epd" /locus_tag="STM3070" /note="putative -35_signal for epd; RegulonDB:STMLTH004573" protein_bind complement(3233120..3233140) /note="putative binding site for CRP, RegulonDB: STMS1H000116" /bound_moiety="CRP" gene 3233298..3233728 /locus_tag="STM3071" /db_xref="GeneID:1254594" regulatory 3233298..3233303 /regulatory_class="ribosome_binding_site" /locus_tag="STM3071" /note="putative RBS for STM3071; RegulonDB:STMS1H003114" CDS 3233303..3233728 /locus_tag="STM3071" /codon_start=1 /transl_table=11 /product="putative DNA-binding protein" /protein_id="NP_461987.1" /db_xref="GeneID:1254594" /translation="MTVSHHNASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAG CTGSLTDVALRYAGQEATTSLTGTFEVISLNGTLELTGEHLHLAVSDPYGVMLGGHMM PGCTVRTTLELVIGELPALTFSRQPCAISGYDELHISSR" misc_feature 3233324..3233710 /locus_tag="STM3071" /note="Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain [General function prediction only]; Region: AF0104; COG1661" /db_xref="CDD:441267" misc_feature order(3233339..3233341,3233345..3233347,3233351..3233353, 3233360..3233362,3233438..3233443,3233489..3233491, 3233510..3233521,3233525..3233527,3233531..3233533, 3233552..3233554,3233558..3233560,3233564..3233566, 3233573..3233575,3233582..3233584,3233588..3233596, 3233636..3233638,3233642..3233644,3233648..3233650, 3233654..3233656) /locus_tag="STM3071" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:211390" gene 3233748..3234332 /locus_tag="STM3072" /db_xref="GeneID:1254595" regulatory 3233748..3233753 /regulatory_class="ribosome_binding_site" /locus_tag="STM3072" /note="putative RBS for STM3072; RegulonDB:STMS1H003115" CDS 3233754..3234332 /locus_tag="STM3072" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_461988.1" /db_xref="GeneID:1254595" /translation="MARRPFSSQSLVLIVIAIAINMIGGQLISMLKLPIFLDSIGTLI SAVLLGPFIGMLTGLLTNLLWGLLTDPIAAAFAPVAMVIGLVAGWLARAGWFRTLPKV IVSGVVITLAVTLVAVPLRTALFGGVTGSGADLFVAWMHSMGQNLVESVAITVIGANL VDKILTAIIVWVLLRQLPLRTTRHFPAMSAVR" gene 3234333..3235040 /locus_tag="STM3073" /db_xref="GeneID:1254596" CDS 3234333..3235040 /locus_tag="STM3073" /note="permease component CbiQ and related transporter" /codon_start=1 /transl_table=11 /product="putative ABC-type cobalt transport system" /protein_id="NP_461989.1" /db_xref="GeneID:1254596" /translation="MHPFTSLTLWALAACTTLLLPAQTVLPVYSAAAFLCLLALKSTR RRAKYVAWLMLSLGFGLWLVHGGWLTEWISGQPRDPQRWVYAVTLWLRLLAIVSTSQL WMQYVPVQRFIRALFASRLPPGIAYLFAGPLLVVEQLKRQLTIVHEAQRARGVPLDEG WYQRLRAMPALIVPLTQNALNDLTIRGAALDMRGFRLHRARTTLWAPKDSVLQRVARY GMVLLILAEAGVWIWLR" misc_feature 3234333..3235010 /locus_tag="STM3073" /note="T component of ECF-type transporters; Region: EcfT; cd16914" /db_xref="CDD:410987" misc_feature order(3234360..3234365,3234369..3234374,3234381..3234386, 3234477..3234479,3234489..3234494,3234501..3234506, 3234597..3234599,3234609..3234611,3234630..3234632, 3234639..3234644,3234657..3234659,3234702..3234704, 3234714..3234719,3234723..3234731,3234735..3234740, 3234747..3234752,3234759..3234764,3234834..3234839, 3234843..3234851,3234855..3234863,3234867..3234872, 3234876..3234881,3234891..3234893,3234900..3234905, 3234921..3234923,3234927..3234929) /locus_tag="STM3073" /note="S component interface [polypeptide binding]; other site" /db_xref="CDD:410987" misc_feature order(3234711..3234713,3234723..3234725,3234732..3234737, 3234741..3234746,3234876..3234878,3234885..3234890, 3234894..3234911,3234918..3234926,3234936..3234938, 3234942..3234944) /locus_tag="STM3073" /note="A' component interface [polypeptide binding]; other site" /db_xref="CDD:410987" misc_feature order(3234774..3234797,3234840..3234842,3234849..3234854, 3234861..3234863) /locus_tag="STM3073" /note="A component interface [polypeptide binding]; other site" /db_xref="CDD:410987" gene 3235022..3235705 /locus_tag="STM3074" /db_xref="GeneID:1254597" regulatory 3235022..3235027 /regulatory_class="ribosome_binding_site" /locus_tag="STM3074" /note="putative RBS for STM3074; RegulonDB:STMS1H003116" CDS 3235028..3235705 /locus_tag="STM3074" /note="ATPase component; similar to E. coli ATP-binding component of putrescine transport system (AAC73942.1); Blastp hit to AAC73942.1 (404 aa), 38% identity in aa 74 - 207" /codon_start=1 /transl_table=11 /product="putative ABC-type cobalt transport system" /protein_id="NP_461990.1" /db_xref="GeneID:1254597" /translation="MVTLEQFRYLPSDATRPPACFDFHYSTPGIVAIVGDNGSGKSTL AQLMAGWYPDYLPGDIDGTGLLLGVPIGRLPLVEQSPTIQLVQQSPYLQLSGCTFSVE EEVAFGPENLGLHEAEILRRIDEALTLTNCQSLRHRHPGTLSGGETQRVVIASALAMQ PRLLILDEAFSRLTSAATGMLLERLQQWALERHSLIVLFERNHFPFLTRCQRVWQLRD GALTPLC" misc_feature 3235031..>3235159 /locus_tag="STM3074" /note="DNA repair exonuclease SbcCD ATPase subunit [Replication, recombination and repair]; Region: SbcC; COG0419" /db_xref="CDD:440188" misc_feature 3235115..3235684 /locus_tag="STM3074" /note="First domain of the ATP-binding cassette component of cobalt transport system; Region: ABC_cobalt_CbiO_domain1; cd03225" /db_xref="CDD:213192" misc_feature 3235130..3235153 /locus_tag="STM3074" /note="Walker A/P-loop; other site" /db_xref="CDD:213192" misc_feature order(3235139..3235144,3235148..3235156,3235289..3235291, 3235526..3235531,3235625..3235627) /locus_tag="STM3074" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213192" misc_feature 3235280..3235291 /locus_tag="STM3074" /note="Q-loop/lid; other site" /db_xref="CDD:213192" misc_feature 3235454..3235483 /locus_tag="STM3074" /note="ABC transporter signature motif; other site" /db_xref="CDD:213192" misc_feature 3235514..3235531 /locus_tag="STM3074" /note="Walker B; other site" /db_xref="CDD:213192" misc_feature 3235538..3235549 /locus_tag="STM3074" /note="D-loop; other site" /db_xref="CDD:213192" misc_feature 3235613..3235633 /locus_tag="STM3074" /note="H-loop/switch region; other site" /db_xref="CDD:213192" gene 3235693..3236355 /locus_tag="STM3075" /db_xref="GeneID:1254598" regulatory 3235693..3235698 /regulatory_class="ribosome_binding_site" /locus_tag="STM3075" /note="putative RBS for STM3075; RegulonDB:STMS1H003117" CDS 3235699..3236355 /locus_tag="STM3075" /note="ATPase component; similar to E. coli ATP-binding component of sulfate permease A protein; chromate resistance (AAC75475.1); Blastp hit to AAC75475.1 (365 aa), 33% identity in aa 18 - 219" /codon_start=1 /transl_table=11 /product="putative ABC-type cobalt transport system" /protein_id="NP_461991.1" /db_xref="GeneID:1254598" /translation="MLTLNQVAYRWPDAAADCLHAISLKLRDGEWLALTGDNGAGKST LLRIMAGLLSPASGSVTLNGEPIAQLKNRQRAAAIGVLFQEAENQIFHSNVAQEVAFG LKLQRLSAEEISRRTQAALRLCQLTDVAEAHPLDLHAAQRRMVAVASLEAIAPPVLLL DEPSRDFDAHWLTVFEHWLATCRARGTSVVAISHDAAFTRRHFSRVVRLENGRLSKGE " misc_feature 3235708..3236337 /locus_tag="STM3075" /note="First domain of the ATP-binding cassette component of cobalt transport system; Region: ABC_cobalt_CbiO_domain1; cd03225" /db_xref="CDD:213192" misc_feature 3235804..3235827 /locus_tag="STM3075" /note="Walker A/P-loop; other site" /db_xref="CDD:213192" misc_feature order(3235813..3235818,3235822..3235830,3235948..3235950, 3236179..3236184,3236278..3236280) /locus_tag="STM3075" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213192" misc_feature 3235939..3235950 /locus_tag="STM3075" /note="Q-loop/lid; other site" /db_xref="CDD:213192" misc_feature 3236107..3236136 /locus_tag="STM3075" /note="ABC transporter signature motif; other site" /db_xref="CDD:213192" misc_feature 3236167..3236184 /locus_tag="STM3075" /note="Walker B; other site" /db_xref="CDD:213192" misc_feature 3236191..3236202 /locus_tag="STM3075" /note="D-loop; other site" /db_xref="CDD:213192" misc_feature 3236266..3236286 /locus_tag="STM3075" /note="H-loop/switch region; other site" /db_xref="CDD:213192" gene complement(3236399..3238401) /gene="tktA" /locus_tag="STM3076" /db_xref="GeneID:1254599" CDS complement(3236399..3238390) /gene="tktA" /locus_tag="STM3076" /EC_number="2.2.1.1" /note="similar to E. coli transketolase 1 isozyme (AAC75972.1); Blastp hit to AAC75972.1 (663 aa), 95% identity in aa 1 - 663" /codon_start=1 /transl_table=11 /product="transketolase 1 isozyme" /protein_id="NP_461992.1" /db_xref="GeneID:1254599" /translation="MSSRKELANAIRALSMDAVQKAKSGHPGAPMGMADIAEVLWRDF LNHNPTNPSWADRDRFVLSNGHGSMLIYSLLHLTGYDLPMSELQNFRQLHSKTPGHPE VGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHFTYVFMGDGCMME GISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWFTDDTAKRFEAYGWHVIRGIDG HDADAIKRATEEARAVTDKPSLLMCKTIIGFGSPNKQGTHDSHGAPLGDAEIALTREQ LGWKYAPFEIPSEIYAQWDAKEAGQAKESAWNEKFAAYEKAFPQEAAEFTRRMKGDMP ADFDAKANEFIAKLQANPSKIASRKASQNTIEAFGPLLPEFLGGSADLAPSNLTLWSG SKAINEDAAGNYIHYGVREFGMTAIANGIALHGGFLPYTSTFLMFVEYARNAVRMAAL MKQRQVMVYTHDSIGLGEDGPTHQPVEQVASLRVTPNMSTWRPCDQVESAVAWKYGVE RQDGPTALILSRQNLAQQERTEEQLANIARGGYVLKDCAGQPQIIFIATGSEVELAVA AYEKLTAEGVKARVVSMPSTDAFDKQDAAYRESVLPKAVSARVAIEAGIADYWFKYVG LNGAIVGMTTFGESAPAELLFEEFGFTVDNVIAKAKALL" misc_feature complement(3236402..3238390) /gene="tktA" /locus_tag="STM3076" /note="Transketolase [Carbohydrate transport and metabolism]; Region: TktA; COG0021" /db_xref="CDD:439792" regulatory complement(3238396..3238401) /regulatory_class="ribosome_binding_site" /gene="tktA" /locus_tag="STM3076" /note="putative RBS for tktA; RegulonDB:STMS1H003118" gene 3238653..3239424 /gene="yggG" /locus_tag="STM3077" /db_xref="GeneID:1254600" regulatory 3238653..3238658 /regulatory_class="ribosome_binding_site" /gene="yggG" /locus_tag="STM3077" /note="putative RBS for yggG; RegulonDB:STMS1H003119" CDS 3238666..3239424 /gene="yggG" /locus_tag="STM3077" /note="similar to E. coli orf, hypothetical protein (AAC75973.1); Blastp hit to AAC75973.1 (294 aa), 90% identity in aa 43 - 294" /codon_start=1 /transl_table=11 /product="putative Zn-dependent proteases with possible chaperone function" /protein_id="NP_461993.1" /db_xref="GeneID:1254600" /translation="MKIRALLLALGMATVLTGCQNMDSNGLLSSGAEAFQAYTLSDAQ VKALSDQSCQELDSKAKIAPASSEYTKRLAKIAAALGDNINGQPVNYKVYETKDVNAF AMANGCIRVYSGLMDMMTDNEVEAVIGHEMGHVALGHVKKGMQVALGTNAVRVAAASA GGVVGSLSQSQLGDLGEKLVNSQFSQRQESEADDYSYDLLRKRGISPAGLATSFEKLA KLEAGRQSSMFDDHPASAARAQHVRDRMSADGIK" misc_feature 3238753..3239400 /gene="yggG" /locus_tag="STM3077" /note="Peptidase M48C Ste24p loiP-like, integral membrane protein; Region: M48C_loiP_like; cd07334" /db_xref="CDD:320693" misc_feature order(3239053..3239058,3239065..3239067,3239230..3239232, 3239242..3239244,3239359..3239361) /gene="yggG" /locus_tag="STM3077" /note="putative active site [active]" /db_xref="CDD:320693" misc_feature order(3239053..3239055,3239065..3239067,3239230..3239232, 3239359..3239361) /gene="yggG" /locus_tag="STM3077" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:320693" gene complement(3239525..3240457) /gene="speB" /locus_tag="STM3078" /db_xref="GeneID:1254601" CDS complement(3239525..3240445) /gene="speB" /locus_tag="STM3078" /EC_number="3.5.3.11" /note="similar to E. coli agmatinase (AAC75974.1); Blastp hit to AAC75974.1 (306 aa), 98% identity in aa 1 - 306" /codon_start=1 /transl_table=11 /product="agmatinase" /protein_id="NP_461994.1" /db_xref="GeneID:1254601" /translation="MSTLGHQYDNSLVSNAFGFLRLPMNFQPYDSDADWVITGVPFDM ATSGRAGGRHGPAAIRQVSTNLAWEHHRFPWNFDMRERLNVVDCGDLVYAFGDAREMS EKLQAHAEKLLSAGKRMLSFGGDHFVTLPLLRAHAKHFGKMALVHFDAHTDTYANGCE FDHGTMFYTAPKEGLIDPHHSVQIGIRTEFDKDNGFTVLDACQVNDRGVDDILAQVKQ IVGDMPVYLTFDIDCLDPAFAPGTGTPVIGGLTSDRAIKLVRGLKDLNIVGMDVVEVA PAYDQSEITALAAATLALEMLYIQAAKKGE" misc_feature complement(3239528..3240427) /gene="speB" /locus_tag="STM3078" /note="agmatinase; Provisional; Region: PRK02190" /db_xref="CDD:235011" misc_feature complement(order(3239624..3239626,3239750..3239752, 3239756..3239758,3239954..3239959,3239987..3239995, 3239999..3240001,3240068..3240070)) /gene="speB" /locus_tag="STM3078" /note="putative active site [active]" /db_xref="CDD:212538" regulatory complement(3240452..3240457) /regulatory_class="ribosome_binding_site" /gene="speB" /locus_tag="STM3078" /note="putative RBS for speB; RegulonDB:STMS1H003120" gene complement(3240650..3241606) /locus_tag="STM3079" /db_xref="GeneID:1254602" CDS complement(3240650..3241606) /locus_tag="STM3079" /note="similar to E. coli orf, hypothetical protein (AAC73780.1); Blastp hit to AAC73780.1 (254 aa), 22% identity in aa 18 - 234" /codon_start=1 /transl_table=11 /product="putative hydrolase or acyltransferase" /protein_id="NP_461995.3" /db_xref="GeneID:1254602" /translation="MMLFLFNLNNMVFYTESDWRGVMNHIFKLAFIFIINIIFLINAS ATTMDKDKFVEANGIKIHYVEEGEGPPLLLIHGGGLTAKSWQGLAKEASRYFRVIMPD SRGHGLTNNPQGTFSYDLMTEDMAAFVKALKLEKPLVMGYSDGGMVVLKLTSRYPDLA RAAIVGGATHRFATTHYMQGMEIFYGKGMPQGQLTDRDLDKMASDAPGMVKFYQNMHH PEQKDYWRTFLKGVWPMWTTPTSLAEEEVKKIHIPVLLLDGDRDEFFTVEEVTELYRL LPQAEMTLIPGSGHAIFQTPGKTPLFYALVLEFLQRQIPKAS" misc_feature complement(3240671..3241465) /locus_tag="STM3079" /note="2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase MenH and related esterases, alpha/beta hydrolase fold [Coenzyme transport and metabolism, General function prediction only]; Region: MenH; COG0596" /db_xref="CDD:440361" gene complement(3241820..3242299) /locus_tag="STM3080" /db_xref="GeneID:1254603" CDS complement(3241820..3242293) /locus_tag="STM3080" /note="similar to E. coli orf, hypothetical protein (AAC77209.1); Blastp hit to AAC77209.1 (153 aa), 38% identity in aa 4 - 150" /codon_start=1 /transl_table=11 /product="putative mannitol dehydrogenase" /protein_id="NP_461996.1" /db_xref="GeneID:1254603" /translation="MLYGNIEQLTLLPYVNHIIKKLIIEAVKIAEDQPAGRYELSFPE SFLMISEGETHSSLNRKAELHKKYIDVQILLSGYEEIGYSNKIDTRIKELEHLPDDII FPECVANEQFVTLNPGDFALFYPNQVHRPLCTRGKPAPVKKAIVKIPATAFSESS" misc_feature complement(3241883..3242293) /locus_tag="STM3080" /note="Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]; Region: EbgC; COG2731" /db_xref="CDD:442037" regulatory complement(3242294..3242299) /regulatory_class="ribosome_binding_site" /locus_tag="STM3080" /note="putative RBS for STM3080; RegulonDB:STMS1H003121" gene complement(3242332..3243343) /locus_tag="STM3081" /db_xref="GeneID:1254604" CDS complement(3242332..3243339) /locus_tag="STM3081" /note="similar to E. coli putative malate dehydrogenase (AAC73619.1); Blastp hit to AAC73619.1 (349 aa), 40% identity in aa 3 - 332" /codon_start=1 /transl_table=11 /product="L-lactate dehydrogenase" /protein_id="NP_461997.1" /db_xref="GeneID:1254604" /translation="MSTILVKENELKALAFNKLTQAGLDAQTAQQVADVLVHADITGV HSHGVIRVEHYCTRLNAGGLNPKATFSIEQISPSVAILDSDDGMGHCALIKATDHAIS LARETGLGFVSVKNTSHCGALSWFIEQATSQGMVAIAMTRTDTCVAPYGGAERFLGTN PIAFGFPVKDSHPMIVDMATSAIAFGKILHAKETGKPIGHGLALDKEGHITTDPHKIE NLLPFGGHKGSGIALAIDALTGVLMGANFSNHIVRMYGDYDKMRKLASLVIVIDPQML GNPLFSSIMSTMVNELRAVKPMPGVDKVLAPNDPQIAYKEKCLKEGIPVAEGIYQYLI G" misc_feature complement(3242341..3243312) /locus_tag="STM3081" /note="Malate/L-lactate dehydrogenase; Region: Ldh_2; pfam02615" /db_xref="CDD:460620" regulatory complement(3243338..3243343) /regulatory_class="ribosome_binding_site" /locus_tag="STM3081" /note="putative RBS for STM3081; RegulonDB:STMS1H003122" gene complement(3243353..3244380) /locus_tag="STM3082" /db_xref="GeneID:1254605" CDS complement(3243353..3244369) /locus_tag="STM3082" /note="similar to E. coli putative oxidoreductase (AAC77314.1); Blastp hit to AAC77314.1 (345 aa), 54% identity in aa 9 - 345" /codon_start=1 /transl_table=11 /product="putative zinc-binding dehydrogenase" /protein_id="NP_461998.1" /db_xref="GeneID:1254605" /translation="MKTLICNNPGNIEYIERDIPHLKDDEVLLKIKAVGICGTDIHAF AGRQPFFAYPRVLGHEICGVAEMLGKSCSTAKVGQRYSVIPCIPCGACAACREGKTNC CENVSLYGVHQDGGFSEYLAVREQNLVELSDNLTDSAGALVECFAISAHAVRRADVKP QQNIVVVGAGPIGLAAAAIAKAKGARVAVADIDAERRRLVAEKVGVATLDPSSDDYID ALKACFSGELAGTVLDATGNKSSMSRAVDLIRHGGKIVFIGLYIGELVIDDPTFHKKE TTLLSSRNATREDFECVIELMAQGAISETMMKNQEFDFYTFGNQYQKNVVENKKLVKG VIKF" misc_feature complement(3243356..3244369) /locus_tag="STM3082" /note="Alcohol dehydrogenases of the MDR family; Region: Zn_ADH7; cd08261" /db_xref="CDD:176222" misc_feature complement(order(3243518..3243526,3243593..3243598, 3243656..3243658,3243662..3243667,3243737..3243739, 3243782..3243784,3243794..3243799,3243851..3243868, 3243926..3243928,3243938..3243940,3244244..3244246, 3244253..3244261)) /locus_tag="STM3082" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176222" misc_feature complement(order(3243938..3243940,3244190..3244195, 3244259..3244261)) /locus_tag="STM3082" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176222" misc_feature complement(order(3244061..3244063,3244085..3244087, 3244094..3244096,3244103..3244105)) /locus_tag="STM3082" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176222" gene complement(3244372..3245852) /locus_tag="STM3083" /db_xref="GeneID:1254606" CDS complement(3244372..3245844) /locus_tag="STM3083" /note="similar to E. coli putative oxidoreductase (AAC75233.1); Blastp hit to AAC75233.1 (488 aa), 49% identity in aa 1 - 477" /codon_start=1 /transl_table=11 /product="putative mannitol dehydrogenase" /protein_id="NP_461999.1" /db_xref="GeneID:1254606" /translation="MDTIARQLDAARHQFKTTYSRQGMEANIVHIGFGAFHRGHQAVY NDLTNEITGNRWGIFELNLFGDAELVDALNAQQGLFSVVETSASAINSRLVRTITGAL HTPKSGIQAAIEKLTEPQVKIVSLTITEKGYCTDPRSRTLDLSHPLIKHDLADPEHPR SALGLIVEALRIRRQQGLPPFSVLSCDNIPENGHLTKTAIVTFADNLDPQLAAWIAKH VTFPGTMVDRIVPAMTPEQFDMIKDQIGFADPCGIVCEDFRQWVIEDNFVAGRPDWDK AGAMFVSDVLPYEEMKLRMLNGSHSFLAYNGSLAGYEFIYQCMEDDAFKTAVHHLMTE EQAKSLRPNLAVDVHQYAQLLIDRFSNPNIKHKTGQIAMDGSQKLPQRAVDPYLTLQA RGVKGRALATLIAGWLHYVINTLSQGQSVADPLNDTFNAAIKNKNTRWEQALSLLQIN SIFGTLASDNADFLNNIQQAFNHIELHGVTATIHRLSSKG" misc_feature complement(3244381..3245793) /locus_tag="STM3083" /note="Mannitol-1-phosphate/altronate dehydrogenases [Carbohydrate transport and metabolism]; Region: MtlD; COG0246" /db_xref="CDD:440016" regulatory complement(3244375..3244380) /regulatory_class="ribosome_binding_site" /locus_tag="STM3082" /note="putative RBS for STM3082; RegulonDB:STMS1H003123" regulatory complement(3245847..3245852) /regulatory_class="ribosome_binding_site" /locus_tag="STM3083" /note="putative RBS for STM3083; RegulonDB:STMS1H003124" gene complement(3247104..3247910) /locus_tag="STM3084" /db_xref="GeneID:1254607" CDS complement(3247104..3247904) /locus_tag="STM3084" /note="similar to E. coli regulator for uxu operon (AAC77280.1); Blastp hit to AAC77280.1 (257 aa), 39% identity in aa 8 - 247" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_462000.3" /db_xref="GeneID:1254607" /translation="MFTLPSSGAIAVYIGMCMEQILTKRRYFDIGLQIEELLYSGVFK AGERLPAERELSERFQTSRTTIREAIIMLELKGVVEVKQGAGTYFIDSLEKINQKALL PYSDIGPFELLQARQVIESNITGFAATQIRFNELKQLKRIIEQQEKQIGGDSDKFEEL DRQFHNIIAESTQNRVLMKQSAELWRAVRTENPRWKQLNYKYLHKKELRMKWVEDHRS IFLALQKRDAEQARQASWTHLENSKNELVKIFQQDDSLEDFDDFFFAT" misc_feature complement(3247113..3247853) /locus_tag="STM3084" /note="Uxu operon transcriptional regulator; Region: PRK10225" /db_xref="CDD:182318" regulatory complement(3247905..3247910) /regulatory_class="ribosome_binding_site" /locus_tag="STM3084" /note="putative RBS for STM3084; RegulonDB:STMS1H003125" gene complement(3248058..3248795) /locus_tag="STM3085" /db_xref="GeneID:1254608" CDS complement(3248058..3248789) /locus_tag="STM3085" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_462001.1" /db_xref="GeneID:1254608" /translation="MSKFKFNAVIVGLFLLLGGCSSGMQSNNGSSSDVGTAWGGDVHS SVQSVSVERADREPAEMVIINYSTQYPSGYDKVYSIRISDLEYAVRDANFNSIPITRR YNASMGQWQYSIPARSGMNYQLYIRNYSHDTNYEIVATVDGLDVLNGKAGSLNHHGYI VNAGDSLAIKGFRKDKHTEAAFQFADVADAYAAHSAQGDVRNIGVIGFAAFALQGKAT NTLPPCSSQAFPADNNGYAPPPCRK" regulatory complement(3248790..3248795) /regulatory_class="ribosome_binding_site" /locus_tag="STM3085" /note="putative RBS for STM3085; RegulonDB:STMS1H003126" gene complement(3248933..3251005) /gene="speA" /locus_tag="STM3086" /db_xref="GeneID:1254609" CDS complement(3248933..3250909) /gene="speA" /locus_tag="STM3086" /EC_number="4.1.1.19" /note="similar to E. coli biosynthetic arginine decarboxylase (AAC75975.1); Blastp hit to AAC75975.1 (658 aa), 97% identity in aa 1 - 658" /codon_start=1 /transl_table=11 /product="arginine decarboxylase" /protein_id="NP_462002.1" /db_xref="GeneID:1254609" /translation="MSDDMSMGSPSSAGEQGVLRSMQEVAMSSQEASKMLRTYNIAWW GNNYYDVNELGHISVCPDPDVPEARVDLAKLVKAREAQGQRLPALFCFPQILQHRLRS INAAFKRARESYGYNGDYFLVYPIKVNQHRRVIESLIHSGEPLGLEAGSKAELMAVLA HAGMTRSVIVCNGYKDREYIRLALIGEKMGHKVYLVIEKMSEIAIVLEEAERLNVVPR LGVRARLASQGSGKWQSSGGEKSKFGLAATQVLQLVETLRDAGRLDSLQLLHFHLGSQ MANIRDIATGVRESARFYVELHKLGVNIQCFDVGGGLGVDYEGTRSQSDCSVNYGLNE YANNIIWAIGDACEEHGLPHPTVITESGRAVTAHHTVLVSNIIGVERNEYTDPTAPAE DAPRALQNLWETWQEMHKPGTRRSLREWLHDSQMDLHDIHIGYSSGAFSLQERAWAEQ LYLSMCHEVQKQLDPQNRAHRPIIDELQERMADKMYVNFSLFQSMPDAWGIDQLFPVL PLEGLDQVPERRAVLLDITCDSDGAIDHYIDGDGIATTMPMPEYDPENPPMLGFFMVG AYQEILGNMHNLFGDTEAVDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPKTLLTHF RDQVKQTDLDDALQQQFLEEFEAGLYGYTYLEDE" misc_feature complement(3248936..3250846) /gene="speA" /locus_tag="STM3086" /note="biosynthetic arginine decarboxylase; Region: PRK05354" /db_xref="CDD:235427" misc_feature complement(order(3249176..3249184,3249191..3249199, 3249317..3249319,3249323..3249331,3249335..3249337, 3249437..3249439,3249446..3249448,3249452..3249454, 3249458..3249460,3249473..3249475,3249773..3249781, 3250178..3250189,3250295..3250297,3250307..3250309, 3250319..3250321,3250379..3250381,3250448..3250453, 3250457..3250462,3250529..3250531,3250652..3250654)) /gene="speA" /locus_tag="STM3086" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143503" misc_feature complement(order(3249182..3249184,3249194..3249196, 3249206..3249208,3249323..3249328,3249821..3249832, 3249974..3249979,3250085..3250087,3250094..3250096, 3250244..3250246,3250394..3250396,3250466..3250468, 3250529..3250531,3250535..3250537)) /gene="speA" /locus_tag="STM3086" /note="active site" /db_xref="CDD:143503" misc_feature complement(order(3249206..3249208,3249326..3249328, 3249821..3249832,3249974..3249979,3250085..3250087, 3250094..3250096,3250244..3250246,3250394..3250396, 3250466..3250468,3250529..3250531,3250535..3250537)) /gene="speA" /locus_tag="STM3086" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143503" misc_feature complement(order(3249326..3249328,3250529..3250531)) /gene="speA" /locus_tag="STM3086" /note="catalytic residues [active]" /db_xref="CDD:143503" misc_feature complement(order(3249182..3249184,3249194..3249196, 3249206..3249208,3249323..3249328,3249821..3249823, 3250085..3250087)) /gene="speA" /locus_tag="STM3086" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143503" regulatory complement(3250914..3250919) /regulatory_class="ribosome_binding_site" /gene="speA" /locus_tag="STM3086" /note="putative RBS for speA; RegulonDB:STMS1H003127" gene complement(3250918..3251049) /gene="yqgB" /locus_tag="STM3087" /db_xref="GeneID:1254610" CDS complement(3250918..3251049) /gene="yqgB" /locus_tag="STM3087" /note="similar to E. coli orf, hypothetical protein (AAC75976.1); Blastp hit to AAC75976.1 (48 aa), 73% identity in aa 6 - 46" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462003.1" /db_xref="GeneID:1254610" /translation="MKKKPVAQAEHQRYLLENPLVYGLLSRLRIAIVVNCFTLANKN" misc_feature complement(3250921..3251049) /gene="yqgB" /locus_tag="STM3087" /note="Virulence promoting factor; Region: YqgB; pfam11036" /db_xref="CDD:151483" regulatory complement(3250978..3250986) /regulatory_class="minus_10_signal" /gene="yqgB" /locus_tag="STM3087" /note="putative -10_signal for speA; RegulonDB:STMLTH004574" regulatory complement(3250997..3251005) /regulatory_class="minus_35_signal" /gene="yqgB" /locus_tag="STM3087" /note="putative -35_signal for speA; RegulonDB:STMLTH004574" gene 3251170..3251347 /gene="yqgC" /locus_tag="STM3088" /db_xref="GeneID:2673737" regulatory 3251170..3251175 /regulatory_class="ribosome_binding_site" /gene="yqgC" /locus_tag="STM3088" /note="putative RBS for yqgC; RegulonDB:STMS1H003128" CDS 3251183..3251347 /gene="yqgC" /locus_tag="STM3088" /note="similar to E. coli orf, hypothetical protein (AAC75977.1); Blastp hit to AAC75977.1 (71 aa), 78% identity in aa 1 - 51" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_452414.1" /db_xref="GeneID:2673737" /translation="MGITSAGMQSRDADCGGHARTRTMRQIQQNTTVHYLVSPPRPPR KTNPQAKATF" misc_feature 3251183..3251335 /gene="yqgC" /locus_tag="STM3088" /note="Uncharacterized YqgC-like; Region: YqgC; pfam17430" /db_xref="CDD:340145" gene complement(3251344..3251654) /gene="yqgD" /locus_tag="STM3089" /db_xref="GeneID:1254612" CDS complement(3251344..3251643) /gene="yqgD" /locus_tag="STM3089" /note="similar to E. coli orf, hypothetical protein (AAC75978.1); Blastp hit to AAC75978.1 (83 aa), 52% identity in aa 1 - 78" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462005.1" /db_xref="GeneID:1254612" /translation="MTEDSTMSLKVADTGSLSVNQYGWINIWTAILGHFFAQFPAFFE GRRNVGQNQAVNVSDNADIMRIYALLFFCVLGIKRDARLIQKHTTFSSCRHFQPG" regulatory complement(3251649..3251654) /regulatory_class="ribosome_binding_site" /gene="yqgD" /locus_tag="STM3089" /note="putative RBS for yqgD; RegulonDB:STMS1H003129" gene 3251684..3252853 /gene="metK" /locus_tag="STM3090" /db_xref="GeneID:1254613" regulatory 3251684..3251689 /regulatory_class="ribosome_binding_site" /gene="metK" /locus_tag="STM3090" /note="putative RBS for metK; RegulonDB:STMS1H003130" CDS 3251699..3252853 /gene="metK" /locus_tag="STM3090" /EC_number="2.5.1.6" /note="AdoMet synthetase; similar to E. coli methionine adenosyltransferase 1 (AdoMet synthetase); methyl and propylamine donor, corepressor of met genes (AAC75979.1); Blastp hit to AAC75979.1 (384 aa), 97% identity in aa 1 - 384" /codon_start=1 /transl_table=11 /product="methionine adenosyltransferase 1" /protein_id="NP_462006.1" /db_xref="GeneID:1254613" /translation="MAKHLFTSESVSEGHPDKIADQISDAVLDAILQQDPKARVACET YVKTGMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMGFDANSCAVLSAIGKQSPD INQGVDRADPLEQGAGDQGLMFGYATNETDVLMPAPITYAHRLVQRQAEVRKNGTLPW LRPDAKSQVTFQYDDGKIVGIDAVVLSTQHAEDIDQKSLQEAVMEEIIKPILPSEWLN TSTKFFINPTGRFVIGGPMGDCGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAA YAARYVAKNIVAAGLADRCEIQVSYAIGVAEPTSIMVETFGTEKVPAEQLILLVREFF DLRPYGLIQMLDLLHPIYKETAAYGHFGRENFPWEKTDKAQLLRDAAGLK" misc_feature 3251705..3252844 /gene="metK" /locus_tag="STM3090" /note="S-adenosylmethionine synthetase [Coenzyme transport and metabolism]; Region: MetK; COG0192" /db_xref="CDD:439962" gene 3253334..3254740 /gene="galP" /locus_tag="STM3091" /db_xref="GeneID:1254614" regulatory 3253334..3253340 /regulatory_class="ribosome_binding_site" /gene="galP" /locus_tag="STM3091" /note="putative RBS for galP; RegulonDB:STMS1H003131" CDS 3253346..3254740 /gene="galP" /locus_tag="STM3091" /note="similar to E. coli galactose-proton symport of transport system (AAC75980.1); Blastp hit to AAC75980.1 (464 aa), 97% identity in aa 1 - 464" /codon_start=1 /transl_table=11 /product="MFS family galactose:proton symporter" /protein_id="NP_462007.1" /db_xref="GeneID:1254614" /translation="MPDNKKQGRSNKAMTFFVCFLAALAGLLFGLDIGVIAGALPFIT DEFQITAHTQEWVVSSMMFGAAVGAVGSGWLSFKLGRKKSLMIGAILFVAGSLFSAAA PNVEVLIISRVLLGLAVGVASYTAPLYLSEIAPEKIRGSMISMYQLMITIGILGAYLS DTAFSYSGAWRWMLGVIIIPAILLLIGVFFLPDSPRWFAAKRRFHDAERVLLRLRDTS AEAKRELDEIRESLQVKQSGWALFKENSNFRRAVFLGILLQVMQQFTGMNVIMYYAPK IFELAGYTNTTEQMWGTVIVGLTNVLATFIAIGLVDRWGRKPTLTLGFLVMAIGMGIL GTMMHIGIHSPSAQYFAIAMLLMFIIGFAMSAGPLIWVLCSEIQPLKGRDFGITCSTA TNWIANMIVGATFLTMLNNLGNANTFWVYAGLNVLFILLTLWLVPETKHVSLEHIERN LMKGRKLREIGAHD" misc_feature 3253370..3254686 /gene="galP" /locus_tag="STM3091" /note="MFS transporter, sugar porter (SP) family; Region: SP; TIGR00879" /db_xref="CDD:273317" misc_feature order(3253430..3253432,3253442..3253444,3253784..3253786, 3253793..3253798,3253805..3253807,3254129..3254134, 3254144..3254149,3254156..3254161,3254243..3254245, 3254429..3254434,3254441..3254446,3254456..3254458, 3254525..3254530,3254537..3254539) /gene="galP" /locus_tag="STM3091" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340873" gene 3254819..3255316 /gene="sprT" /locus_tag="STM3092" /db_xref="GeneID:1254615" CDS 3254819..3255316 /gene="sprT" /locus_tag="STM3092" /note="similar to E. coli orf, hypothetical protein (AAC75981.1); Blastp hit to AAC75981.1 (165 aa), 90% identity in aa 1 - 164" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462008.1" /db_xref="GeneID:1254615" /translation="MKTPRLPIAIQQAVMRRLRENLAQANLKLDRHYPEPKLVYTQRG TSAGTAWLESYEIRLNPVLLLENIDTFIAEVVPHELAHLLVWKHFGRKAPHGKEWKWM MESVLGVPARRTHQFALQSVRRNTFPYHCQCQQHQLTVRRHNRVVRGEAVYRCVHCGE PLVAG" misc_feature 3254846..3255310 /gene="sprT" /locus_tag="STM3092" /note="SprT family zinc-dependent metalloprotease; Region: PRK04860" /db_xref="CDD:179886" gene 3255348..3256118 /gene="endA" /locus_tag="STM3093" /db_xref="GeneID:1254616" regulatory 3255348..3255356 /regulatory_class="minus_35_signal" /gene="endA" /locus_tag="STM3093" /note="putative -35_signal for endA; RegulonDB:STMLTH004575" regulatory 3255375..3255383 /regulatory_class="minus_10_signal" /gene="endA" /locus_tag="STM3093" /note="putative -10_signal for endA; RegulonDB:STMLTH004575" regulatory 3255399..3255404 /regulatory_class="ribosome_binding_site" /gene="endA" /locus_tag="STM3093" /note="putative RBS for endA; RegulonDB:STMS1H003132" CDS 3255411..3256118 /gene="endA" /locus_tag="STM3093" /EC_number="3.1.21.1" /note="similar to E. coli DNA-specific endonuclease I (AAC75982.1); Blastp hit to AAC75982.1 (235 aa), 87% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="DNA-specific endonuclease I" /protein_id="NP_462009.1" /db_xref="GeneID:1254616" /translation="MYRNFSFAAALLAAAFSGQALADGINNFSQAKAASVKVNADAPG SFYCGCQIRWQGKKGVVDLESCGYKVRKNENRARRIEWEHVVPAWQFGHQRQCWQDGG RKNCAKDPVYRKMESDMHNLQPAIGEVNGDRGNFMYSQWNGGEGQYGQCAMKVDFKAK IAEPPARARGAIARIYFYMRDQYQLKLSRQQTQLFNVWDKQYPVTAWECERDARIAKV QGNHNPYVQRACQARKS" misc_feature 3255411..3256115 /gene="endA" /locus_tag="STM3093" /note="DNA-specific endonuclease I; Provisional; Region: PRK15137" /db_xref="CDD:185091" gene 3256128..3256926 /gene="yggJ" /locus_tag="STM3094" /db_xref="GeneID:1254617" regulatory 3256128..3256133 /regulatory_class="ribosome_binding_site" /gene="yggJ" /locus_tag="STM3094" /note="putative RBS for yggJ; RegulonDB:STMS1H003133" CDS 3256147..3256926 /gene="yggJ" /locus_tag="STM3094" /note="similar to E. coli orf, hypothetical protein (AAC75983.1); Blastp hit to AAC75983.1 (252 aa), 90% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462010.3" /db_xref="GeneID:1254617" /translation="MPWIAKRRGHDADFFIMRIPRIYHPELLTSGTQISLCEDAANHI GRVLRMGPGQALQLFDGSNQVFDAEIISASKKSVEVQVMKGEIDDRESPLHIHLGQVM SRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERLNKKRQQWQKIAIAACEQCGR NRVPEIRPPMALEAWCAEQDSGLKLNLHPRAHASINTLPLPVERVRLLIGPEGGLSAD EIAMTARYQFTDILLGPRVLRTETTALTAITALQVRFGDLG" misc_feature 3256198..3256920 /gene="yggJ" /locus_tag="STM3094" /note="RNA methyltransferase, RsmE family; Region: TIGR00046" /db_xref="CDD:272873" gene 3256934..3257893 /gene="gshB" /locus_tag="STM3095" /db_xref="GeneID:1254618" regulatory 3256934..3256939 /regulatory_class="ribosome_binding_site" /gene="gshB" /locus_tag="STM3095" /note="putative RBS for gshB; RegulonDB:STMS1H003134" CDS 3256946..3257893 /gene="gshB" /locus_tag="STM3095" /EC_number="6.3.2.3" /note="similar to E. coli glutathione synthetase (AAC75984.1); Blastp hit to AAC75984.1 (316 aa), 90% identity in aa 1 - 313" /codon_start=1 /transl_table=11 /product="glutathione synthetase" /protein_id="NP_462011.1" /db_xref="GeneID:1254618" /translation="MIKLGIVMDPIAHINIKKDTSFAMLLEAQRRGYELHYMEMADLY LINGEARARTRTLSVEQNYDKWYEFGSEQEIKLADLDVILMRKDPPFDTEFIYATYIL ERAEEEGTLIVNKPQSLRDCNEKLYTAWFADLTPETLVTRNKAQLKAFWEKHGDIIMK PLDGMGGASIFRVKEGDPNIGVIAETLTELGNRYCMAQNYLPAIKDGDKRVLVVDGEP VPYCLARIPQGGETRGNLAAGGRGEPRPLSESDWEIARRVGPTLKAKGLIFVGLDIIG DRLTEINVTSPTCVREIEAEYPISITGMLMDAIEARLAK" misc_feature 3256946..3257890 /gene="gshB" /locus_tag="STM3095" /note="glutathione synthetase; Provisional; Region: PRK05246" /db_xref="CDD:235371" gene 3258095..3258672 /gene="yqgE" /locus_tag="STM3096" /db_xref="GeneID:1254619" regulatory 3258095..3258100 /regulatory_class="ribosome_binding_site" /gene="yqgE" /locus_tag="STM3096" /note="putative RBS for yqgE; RegulonDB:STMS1H003135" CDS 3258109..3258672 /gene="yqgE" /locus_tag="STM3096" /note="similar to E. coli orf, hypothetical protein (AAC75985.1); Blastp hit to AAC75985.1 (211 aa), 92% identity in aa 25 - 211" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_462012.1" /db_xref="GeneID:1254619" /translation="MNLQHHFLIAMPALQDPIFRRSVVYICEHNQDGAMGIIVNKPLE NLQIEGILEKLKITPEPRDSAIRLDKAVMLGGPLAEDRGFILHTPPSRFASSIRISDN TVITTSRDVLETLGTQQQPSDVLVALGYASWDKGQLEQELLDNAWLTAPADLNILFKT PIAERWREAAKLIGIDILTMPGVAGHA" misc_feature 3258109..3258669 /gene="yqgE" /locus_tag="STM3096" /note="YqgE/AlgH family protein; Region: PRK00228" /db_xref="CDD:234694" gene 3258658..3259088 /gene="yqgF" /locus_tag="STM3097" /db_xref="GeneID:1254620" regulatory 3258658..3258663 /regulatory_class="ribosome_binding_site" /gene="yqgF" /locus_tag="STM3097" /note="putative RBS for yqgF; RegulonDB:STMS1H003136" CDS 3258672..3259088 /gene="yqgF" /locus_tag="STM3097" /note="similar to E. coli orf, hypothetical protein (AAC75986.1); Blastp hit to AAC75986.1 (138 aa), 95% identity in aa 1 - 138" /codon_start=1 /transl_table=11 /product="putative endonuclease involved in recombination" /protein_id="NP_462013.1" /db_xref="GeneID:1254620" /translation="MSGTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTL IERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRFGVTVTLHDERLSTVE ARSGLFERGGYRALNKGKVDSASAVIILESYFEQGY" misc_feature 3258672..3259079 /gene="yqgF" /locus_tag="STM3097" /note="Holliday junction resolvase RuvX; Region: PRK00109" /db_xref="CDD:234639" misc_feature order(3258702..3258710,3258771..3258773,3258855..3258863, 3258885..3258890,3258960..3258962,3259026..3259028) /gene="yqgF" /locus_tag="STM3097" /note="putative nucleic acid substrate binding site [nucleotide binding]; other site" /db_xref="CDD:438564" misc_feature order(3258744..3258752,3259017..3259019,3259029..3259031, 3259038..3259043,3259050..3259055,3259062..3259064, 3259074..3259076) /gene="yqgF" /locus_tag="STM3097" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:438564" gene complement(3259135..3259824) /locus_tag="STM3098" /db_xref="GeneID:1254621" CDS complement(3259135..3259821) /locus_tag="STM3098" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_462014.1" /db_xref="GeneID:1254621" /translation="MSSQPNQSLIDGIRCLQYLVSSDRAIGCRELARLMDINTTRVNR LLMTMASIGLTMQDEHRRYLPGPGIHALAAQAIRGSALFSHALPILERHAPKDIVVAL GVLWEDQIIYIYHSTPGSQGSQALAGFRMYPAWQSVPGVALLAAESDEALMQRFTPEQ WRNLAPHVAQQRQRGYVLWHHADGEVSMAQPLGKHAAALAFAGMWRIDEAEAAARLQA LKALNQLIAQ" misc_feature complement(3259138..3259818) /locus_tag="STM3098" /note="DNA-binding transcriptional regulator, IclR family [Transcription]; Region: IclR; COG1414" /db_xref="CDD:441024" regulatory complement(3259819..3259824) /regulatory_class="ribosome_binding_site" /locus_tag="STM3098" /note="putative RBS for STM3098; RegulonDB:STMS1H003137" gene complement(3259953..3260945) /gene="yggR" /locus_tag="STM3099" /db_xref="GeneID:1254622" CDS complement(3259953..3260933) /gene="yggR" /locus_tag="STM3099" /note="similar to E. coli putative protein transport (AAC75987.1); Blastp hit to AAC75987.1 (341 aa), 79% identity in aa 16 - 341" /codon_start=1 /transl_table=11 /product="putative protein transport" /protein_id="NP_462015.1" /db_xref="GeneID:1254622" /translation="MNMEEIVTLSVKHNVSDLHLCNAWPARWRKQGRMENAPFTAPDV DRLLLDWLNDAQQYQWRTHGQLDFAVSLSGTRRLRASAFTHQQGTSLALRLLPERCPD LAKIQTPPIVPALLASENGLILVTGATGCGKSTTLAAMVGYLNQHADKHILTLEDPIE YRYTSKRCLIQQREIGQHCATFAAGLRAALREDPDVILLGELRDSETIRLALTAAETG HLVLATLHTRGAAQAVERLVDSFPAQEKEPVRSQLAGSLRAVLSQKLEVDRQDGRVAL FELLINTPATGNLIREGKLHQLAHVIQTGQQQGMMTFAQSAQWRQAQGRL" misc_feature complement(3259959..3260933) /gene="yggR" /locus_tag="STM3099" /note="Type IV pilus assembly protein PilT, pilus retraction ATPase [Cell motility, Extracellular structures]; Region: PilT; COG2805" /db_xref="CDD:442056" regulatory complement(3260940..3260945) /regulatory_class="ribosome_binding_site" /gene="yggR" /locus_tag="STM3099" /note="putative RBS for yggR; RegulonDB:STMS1H003138" gene 3260944..3261655 /gene="yggS" /locus_tag="STM3100" /db_xref="GeneID:1254623" regulatory 3260944..3260949 /regulatory_class="ribosome_binding_site" /gene="yggS" /locus_tag="STM3100" /note="putative RBS for yggS; RegulonDB:STMS1H003139" CDS 3260951..3261655 /gene="yggS" /locus_tag="STM3100" /note="similar to E. coli orf, hypothetical protein (AAC75988.1); Blastp hit to AAC75988.1 (234 aa), 89% identity in aa 1 - 233" /codon_start=1 /transl_table=11 /product="putative enzyme with a TIM-barrel fold" /protein_id="NP_462016.1" /db_xref="GeneID:1254623" /translation="MNDIAHNLAYIRDKISAAATRCGRSSEEVTLLAVSKTKPASDIA EAIAAGQRAFGENYVQEGVEKIRHFQEAKVEGLHWHFIGPLQSNKSRLVAEHFDWCHT IDRLRIASRLSEQRPDNLPALNVLIQINISDENSKSGIPLAELDELAAAVATLPRLRL RGLMAIPAPESDYVRQFEVARQMAVAFAGLKARYPDVDTLSLGMSDDMEAAIAAGSTM VRIGTAIFGARDYTKN" misc_feature 3260957..3261634 /gene="yggS" /locus_tag="STM3100" /note="Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins; Region: PLPDE_III_Yggs_like; cd06824" /db_xref="CDD:143497" misc_feature order(3261050..3261052,3261056..3261058,3261119..3261121, 3261194..3261196,3261446..3261448,3261560..3261562, 3261608..3261610,3261614..3261619) /gene="yggS" /locus_tag="STM3100" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143497" misc_feature 3261056..3261058 /gene="yggS" /locus_tag="STM3100" /note="catalytic residue [active]" /db_xref="CDD:143497" gene 3261664..3262240 /gene="yggT" /locus_tag="STM3101" /db_xref="GeneID:1254624" regulatory 3261664..3261669 /regulatory_class="ribosome_binding_site" /gene="yggT" /locus_tag="STM3101" /note="putative RBS for yggT; RegulonDB:STMS1H003140" CDS 3261674..3262240 /gene="yggT" /locus_tag="STM3101" /note="similar to E. coli putative resistance protein (AAC75989.1); Blastp hit to AAC75989.1 (188 aa), 90% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="putative integral membran resistance protein" /protein_id="NP_462017.1" /db_xref="GeneID:1254624" /translation="MNTLTFLLSTVIELYTMVLLLRVWMQWARCDFYNPFSQFVVKIT QPIIGPLRRIIPPMGPIDSASLLVAFILSVIKAIVLFKVITFQAIIWIAAVLILLKTI GLLIFWVLLVMAIMSWVSQGRSPIEYVLIQLAEPLLSPIRRILPAMGGIDFSPMVLVL LLYVVNMGIAEVLQATGNMLLPGLWMAL" misc_feature 3261698..3261907 /gene="yggT" /locus_tag="STM3101" /note="YGGT family; Region: YGGT; pfam02325" /db_xref="CDD:460533" misc_feature 3261947..3262195 /gene="yggT" /locus_tag="STM3101" /note="Cytochrome b6 maturation protein CCB3/Ycf19 and related maturases, YggT family [Posttranslational modification, protein turnover, chaperones]; Region: Ycf19; COG0762" /db_xref="CDD:440525" gene 3262225..3262527 /gene="yggU" /locus_tag="STM3102" /db_xref="GeneID:1254625" regulatory 3262225..3262230 /regulatory_class="ribosome_binding_site" /gene="yggU" /locus_tag="STM3102" /note="putative RBS for yggU; RegulonDB:STMS1H003141" CDS 3262237..3262527 /gene="yggU" /locus_tag="STM3102" /note="similar to E. coli orf, hypothetical protein (AAC75990.1); Blastp hit to AAC75990.1 (100 aa), 90% identity in aa 5 - 98" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462018.1" /db_xref="GeneID:1254625" /translation="MSAVTRCEDGLVLRLYIQPKASRDSIVGLHGDEVKIAITAPPVD GQANSHLTKFLGKQFRVAKSQIVIEKGELGRHKQVKIIHPQQIPPEIAALTE" misc_feature 3262237..3262521 /gene="yggU" /locus_tag="STM3102" /note="hypothetical protein; Validated; Region: PRK05090" /db_xref="CDD:179931" gene 3262525..3263128 /gene="yggV" /locus_tag="STM3103" /db_xref="GeneID:1254626" regulatory 3262525..3262530 /regulatory_class="ribosome_binding_site" /gene="yggV" /locus_tag="STM3103" /note="putative RBS for yggV; RegulonDB:STMS1H003142" CDS 3262535..3263128 /gene="yggV" /locus_tag="STM3103" /note="similar to E. coli putative ribosomal protein (AAC75991.1); Blastp hit to AAC75991.1 (197 aa), 91% identity in aa 1 - 197" /codon_start=1 /transl_table=11 /product="putative xanthosine triphosphate pyrophosphatase" /protein_id="NP_462019.1" /db_xref="GeneID:1254626" /translation="MQKVVLATGNAGKVRELASLLSDFGLDVVAQTELGVDSAEETGL TFIENAILKARHAAKMTGLPAIADDSGLAVDVLGGAPGIYSARYSGENATDQQNLEKL LHTLRDVPDDKRQARFHCVLVYLRHAEDPTPIVCHGSWPGVITRQAAGNGGFGYDPIF FVPSEGKTAAELTREEKSAISHRGQALKLLLDALRNG" misc_feature 3262538..3263125 /gene="yggV" /locus_tag="STM3103" /note="dITP/XTP pyrophosphatase; Reviewed; Region: PRK00120" /db_xref="CDD:234648" misc_feature order(3262562..3262564,3262568..3262573,3262580..3262582, 3262742..3262750,3262787..3262792,3262886..3262888, 3262994..3262996,3263000..3263005,3263078..3263083) /gene="yggV" /locus_tag="STM3103" /note="active site" /db_xref="CDD:238285" misc_feature order(3262655..3262663,3262763..3262768,3262775..3262777, 3262784..3262786,3262793..3262795) /gene="yggV" /locus_tag="STM3103" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238285" gene 3263105..3264257 /gene="yggW" /locus_tag="STM3104" /db_xref="GeneID:1254627" regulatory 3263105..3263110 /regulatory_class="ribosome_binding_site" /gene="yggV" /locus_tag="STM3103" /note="putative RBS for yggW; RegulonDB:STMS1H003143" CDS 3263121..3264257 /gene="yggW" /locus_tag="STM3104" /note="similar to E. coli putative oxidase (AAC75992.1); Blastp hit to AAC75992.1 (378 aa), 92% identity in aa 1 - 378" /codon_start=1 /transl_table=11 /product="putative oxidase" /protein_id="NP_462020.1" /db_xref="GeneID:1254627" /translation="MAKLPPLSLYIHIPWCVQKCPYCDFNSHALKGEVPHDDYVQHLL NDLDADVAWAQGREVKTIFIGGGTPSLLSGPAMQTLLDGVRARLNLAADAEITMEANP GTVEADRFIDYQRAGVNRISIGVQSFSEPKLKRLGRIHGPQEAKRAARLANGLGLRSF NLDLMHGLPDQTLEEALNDLRQAIALNPPHLSWYQLTIEPNTLFGSRPPVLPDDDALW DIFEQGHQLLTAAGYQQYETSAYAKPGYQCQHNLNYWRFGDYLGIGCGAHGKVTFPDG RILRTTKTRHPRGYMQGRYLESQRDVSDDDKPFEFFMNRFRLLERAPRAEFVDYTGLT EAVIRQPIDEAIAQGYLTECEQYWQITRHGKLFLNSLLELFLAE" misc_feature 3263121..3264254 /gene="yggW" /locus_tag="STM3104" /note="Coproporphyrinogen-III oxidase HemN (oxygen-independent) or related Fe-S oxidoreductase [Coenzyme transport and metabolism]; Region: HemN; COG0635" /db_xref="CDD:440400" gene complement(3264348..3265374) /gene="yggM" /locus_tag="STM3105" /db_xref="GeneID:1254628" CDS complement(3264348..3265355) /gene="yggM" /locus_tag="STM3105" /note="similar to E. coli putative alpha helix chain (AAC75993.1); Blastp hit to AAC75993.1 (335 aa), 64% identity in aa 3 - 335" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462021.1" /db_xref="GeneID:1254628" /translation="MVRQWIAGAALFALISGYSWAEVAQPSDNILKEQFSKQYHGILK LDSITLKNLDSTGNQATWSAEGDISSREDMYTGVGMAADYYFVEKTWTKDRPVKFSAM LTSKGTPASGWTVNYYSLQMAASDQGRAIDDIKTNDKYLIVNSDDFNYRFGNIEASWR AQKASIPGLEEQLSALDKKIAVAKKEADAYWGKGADGKPLTRAEAFKKTLKERDDYVK ANDSSVYAEKYEKEVYQPALDACRKQSEPCNEAAIQQKRDLDIHEQRRQVFLKSEELR RKAQNDWITLEKGQYPLNIAVQKLQMQQSDIRVKIMDINDGYERWKKDTDDLRRKGVI K" misc_feature complement(3264396..3265316) /gene="yggM" /locus_tag="STM3105" /note="Protein of unknown function (DUF1202); Region: DUF1202; pfam06717" /db_xref="CDD:284194" regulatory complement(3265369..3265374) /regulatory_class="ribosome_binding_site" /gene="yggM" /locus_tag="STM3105" /note="putative RBS for yggM; RegulonDB:STMS1H003144" gene complement(3265488..3266704) /gene="ansB" /locus_tag="STM3106" /db_xref="GeneID:1254629" CDS complement(3265488..3266534) /gene="ansB" /locus_tag="STM3106" /EC_number="3.5.1.1" /note="similar to E. coli periplasmic L-asparaginase II (AAC75994.1); Blastp hit to AAC75994.1 (348 aa), 92% identity in aa 1 - 348" /codon_start=1 /transl_table=11 /product="periplasmic L-asparaginase II" /protein_id="NP_462022.1" /db_xref="GeneID:1254629" /translation="MEFFRKTALAALVMGFSGAAFALPNITILATGGTIAGGGDSATK SNYTAGKVGVENLVDAVPQLKDIAVVKGEQVVNIGSQDMNDEVWLTLAKKINTECDST DGFVITHGTDTMEETAYFLDLTVKCNKPVVLVGAMRPSTSMSADGPFNLYNAVVTAAD KQSANRGVLVVMNDTVMDGRDVTKTNTTDVATFKAVNYGPLGYIHNGKIDYQRTPERK HTTSTPFDVSKLTALPKVGIVYNYANASDLPAKALVDAGYDGIVSAGVGNGNLYKTVF DTLATAAHNGTVVVRSSRVPTGATTQDAEVDDAKYGFVASGTLNPQKARVLLQLALTQ TKDPKQIQTMFNQY" misc_feature complement(3265491..3266531) /gene="ansB" /locus_tag="STM3106" /note="L-asparaginase II; Provisional; Region: ansB; PRK11096" /db_xref="CDD:182958" misc_feature complement(order(3265983..3265985,3266127..3266129, 3266199..3266207,3266292..3266297,3266433..3266438)) /gene="ansB" /locus_tag="STM3106" /note="active site" /db_xref="CDD:199205" misc_feature complement(order(3265560..3265562,3265569..3265574, 3265638..3265643,3265656..3265658,3265719..3265721, 3265725..3265727,3265731..3265739,3265743..3265745, 3265767..3265769,3265776..3265781,3265788..3265793, 3265797..3265799,3265809..3265817,3265821..3265829, 3265971..3265985,3266124..3266126,3266187..3266189, 3266196..3266201,3266271..3266273,3266280..3266294, 3266298..3266300)) /gene="ansB" /locus_tag="STM3106" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:199205" regulatory complement(3266542..3266547) /regulatory_class="ribosome_binding_site" /gene="ansB" /locus_tag="STM3106" /note="putative RBS for ansB; RegulonDB:STMS1H003145" protein_bind complement(3266569..3266593) /gene="ansB" /locus_tag="STM3106" /note="putative binding site for FNR, RegulonDB: STMS1H000170" /bound_moiety="FNR" protein_bind complement(3266635..3266659) /gene="ansB" /locus_tag="STM3106" /note="putative binding site for FNR, RegulonDB: STMS1H000150" /bound_moiety="FNR" protein_bind complement(3266639..3266659) /gene="ansB" /locus_tag="STM3106" /note="putative binding site for CRP, RegulonDB: STMS1H000053" /bound_moiety="CRP" regulatory complement(3266680..3266688) /regulatory_class="minus_10_signal" /gene="ansB" /locus_tag="STM3106" /note="putative -10_signal for ansB; RegulonDB:STMLTH004576" regulatory complement(3266696..3266704) /regulatory_class="minus_35_signal" /gene="ansB" /locus_tag="STM3106" /note="putative -35_signal for ansB; RegulonDB:STMLTH004576" gene complement(3266723..3267453) /gene="yggN" /locus_tag="STM3107" /db_xref="GeneID:1254630" CDS complement(3266723..3267442) /gene="yggN" /locus_tag="STM3107" /note="similar to E. coli orf, hypothetical protein (AAC75995.1); Blastp hit to AAC75995.1 (239 aa), 87% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462023.1" /db_xref="GeneID:1254630" /translation="MMRKTLLATVLTFTAMAAHADYKCSVTPRDDVILSPQTVQVKGE NGNLVITPDGNVMYNGKQYTLSAAQREQAKDYQAELRSALPWIDEGARSRVEKGRVAL DKIIAKEVGESSNMRSRLTKLDAQLKAQMNRIIEHRTDGLTFHYKAIDQVRADGQQLV NQAMGGILQDSINEMGAKAVLKGGGNPLQGVMGSLGGLQTAIQNEWKNQEKDFQQFGK DVCSRVVTLEDSRKALVGSLK" misc_feature complement(3266726..3267442) /gene="yggN" /locus_tag="STM3107" /note="hypothetical protein; Provisional; Region: PRK10626" /db_xref="CDD:182597" regulatory complement(3267448..3267453) /regulatory_class="ribosome_binding_site" /gene="yggN" /locus_tag="STM3107" /note="putative RBS for yggN; RegulonDB:STMS1H003146" gene complement(3267492..3267830) /gene="yggL" /locus_tag="STM3108" /db_xref="GeneID:1254631" CDS complement(3267492..3267818) /gene="yggL" /locus_tag="STM3108" /note="similar to E. coli orf, hypothetical protein (AAC75996.1); Blastp hit to AAC75996.1 (118 aa), 95% identity in aa 11 - 118" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462024.1" /db_xref="GeneID:1254631" /translation="MAKNRSRRLRKKMHIDEFQELGFSVAWRFPEGTSEEQVDKTVDD FINDVIEPNKLAFDGSGYLAWEGLICMQEIGKCTEEHQAIVRKWLEARNLEEVRTSEL FDVWWD" misc_feature complement(3267495..3267818) /gene="yggL" /locus_tag="STM3108" /note="hypothetical protein; Provisional; Region: PRK11702" /db_xref="CDD:183281" gene complement(3267818..3268554) /gene="yggH" /locus_tag="STM3109" /db_xref="GeneID:1254632" CDS complement(3267818..3268537) /gene="yggH" /locus_tag="STM3109" /note="similar to E. coli orf, hypothetical protein (AAC75997.1); Blastp hit to AAC75997.1 (239 aa), 93% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="putative S-adenosylmethionine-dependent methyltransferase" /protein_id="NP_462025.1" /db_xref="GeneID:1254632" /translation="MKNDVISPEFDENGRPLRRIRSFVRRQGRLTKGQEHALENYWPV MGVEFSEAPVDFATLFGREAPVTLEIGFGMGASLVAMAKARPEQNFLGIEVHSPGVGA CLASANEEGVENLRVMCHDAVEVLHKMIPDNSLSMVQLFFPDPWHKARHNKRRIVQVP FAELVLSKLKLGGVFHMATDWEAYAEHMLEVMSSIDGYKNLSESNDYVPRPESRPVTK FEQRGHRLGHGVWDLMFERVK" misc_feature complement(3267830..3268450) /gene="yggH" /locus_tag="STM3109" /note="tRNA G46 N7-methylase TrmB [Translation, ribosomal structure and biogenesis]; Region: TrmB; COG0220" /db_xref="CDD:439990" regulatory complement(3267825..3267830) /regulatory_class="ribosome_binding_site" /gene="yggL" /locus_tag="STM3108" /note="putative RBS for yggL; RegulonDB:STMS1H003147" regulatory complement(3268549..3268554) /regulatory_class="ribosome_binding_site" /gene="yggH" /locus_tag="STM3109" /note="putative RBS for yggH; RegulonDB:STMS1H003148" gene 3268692..3269744 /gene="mutY" /locus_tag="STM3110" /db_xref="GeneID:1254633" CDS 3268692..3269744 /gene="mutY" /locus_tag="STM3110" /EC_number="3.2.2.-" /note="A/G-specific adenine glycosylase. (SW:MUTY_SALTY)" /codon_start=1 /transl_table=11 /product="adenine DNA glycosylase" /protein_id="NP_462026.1" /db_xref="GeneID:1254633" /translation="MQASQFSAQVLDWYDKYGRKTLPWQINKTPYKVWLSEVMLQQTQ VTTVIPYFERFMARFPTVTDLANAPLDEVLHLWTGLGYYARARNLHKAAQQVATLHGG EFPQTFAEIAALPGVGRSTAGAILSLALGKHYPILDGNVKRVLARCYAVSGWPGKKEV ENTLWTLSEQVTPARGVERFNQAMMDLGAMVCTRSKPKCTLCPLQNGCIAAAHESWSR YPGKKPKQTLPERTGYFLLLQHNQEIFLAQRPPSGLWGGLYCFPQFAREDELREWLAQ RHVNADNLTQLNAFRHTFSHFHLDIVPMWLPVSSLDACMDEGSALWYNLAQPPSVGLA APVERLLQQLRTGAPV" misc_feature 3268692..3269741 /gene="mutY" /locus_tag="STM3110" /note="adenine DNA glycosylase; Region: PRK10880" /db_xref="CDD:182805" gene 3269761..3270047 /gene="yggX" /locus_tag="STM3111" /db_xref="GeneID:1254634" regulatory 3269761..3269766 /regulatory_class="ribosome_binding_site" /gene="yggX" /locus_tag="STM3111" /note="putative RBS for yggX; RegulonDB:STMS1H003149" CDS 3269772..3270047 /gene="yggX" /locus_tag="STM3111" /note="similar to E. coli orf, hypothetical protein (AAC75999.1); Blastp hit to AAC75999.1 (91 aa), 94% identity in aa 1 - 91" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462027.1" /db_xref="GeneID:1254634" /translation="MSRTIFCTYLQRDAEGQDFQLYPGELGKRIYNEISKDAWAQWQH KQTMLINEKKLNMMNAEHRKLLEQEMVSFLFEGKDVHIEGYTPEDKK" misc_feature 3269772..3270041 /gene="yggX" /locus_tag="STM3111" /note="oxidative damage protection protein; Provisional; Region: PRK05408" /db_xref="CDD:180059" gene 3270160..3271245 /gene="mltC" /locus_tag="STM3112" /db_xref="GeneID:1254635" CDS 3270160..3271245 /gene="mltC" /locus_tag="STM3112" /EC_number="3.2.1.-" /note="similar to E. coli membrane-bound lytic murein transglycosylase C (AAC76000.1); Blastp hit to AAC76000.1 (360 aa), 91% identity in aa 1 - 360" /codon_start=1 /transl_table=11 /product="membrane-bound lytic murein transglycosylase C" /protein_id="NP_462028.1" /db_xref="GeneID:1254635" /translation="MMKKLLALAVIAPLLISCSSSTKKGETYNEAWVKDTNGFDILMG QFANNIENLWGYKEVLIAGPKDYVKYTDQFQTRSHINFDDGTITVETIAGTEPTAHLR RAIIKTLLMGDDPTSVDLYSDVDDIKISKEPFLYGQVLDNTGQPIRWEGRATTFADYL LKTRLKSRSNGLRIIYSVTINLVPNHLDKRAHKYIGMVRQASRKYGVDESLILAIMQT ESSFNPYAVSHADALGLMQVVQHSAGKDVFRSQGKSGTPSRNFLFDPASNIDTGTAYL AMLNNVYLSGIENPTSRRYAVITAYNGGAGSVLRVFSNDKIQAANMINRMSPGDVYQI LTTRHPSAESRRYLYKVNSAQRSYRRR" misc_feature 3270163..3271242 /gene="mltC" /locus_tag="STM3112" /note="membrane-bound lytic murein transglycosylase MltC; Region: mltC; PRK11671" /db_xref="CDD:183271" gene 3271265..3272718 /gene="nupG" /locus_tag="STM3113" /db_xref="GeneID:1254636" regulatory 3271265..3271273 /regulatory_class="minus_35_signal" /gene="nupG" /locus_tag="STM3113" /note="putative -35_signal for nupG; RegulonDB:STMLTH004577" regulatory 3271292..3271300 /regulatory_class="minus_10_signal" /gene="nupG" /locus_tag="STM3113" /note="putative -10_signal for nupG; RegulonDB:STMLTH004577" protein_bind 3271349..3271369 /gene="nupG" /locus_tag="STM3113" /note="putative binding site for CRP, RegulonDB: STMS1H000073" /bound_moiety="CRP" protein_bind 3271381..3271401 /gene="nupG" /locus_tag="STM3113" /note="putative binding site for CRP, RegulonDB: STMS1H000042" /bound_moiety="CRP" protein_bind 3271391..3271411 /gene="nupG" /locus_tag="STM3113" /note="putative binding site for CRP, RegulonDB: STMS1H000078" /bound_moiety="CRP" regulatory 3271443..3271448 /regulatory_class="ribosome_binding_site" /gene="nupG" /locus_tag="STM3113" /note="putative RBS for nupG; RegulonDB:STMS1H003150" CDS 3271462..3272718 /gene="nupG" /locus_tag="STM3113" /note="similar to E. coli transport of nucleosides, permease protein (AAC76001.1); Blastp hit to AAC76001.1 (434 aa), 90% identity in aa 17 - 434" /codon_start=1 /transl_table=11 /product="MFS family nucleoside transport" /protein_id="NP_462029.1" /db_xref="GeneID:1254636" /translation="MNLKLQLKILSFLQFCLWGSWLTTLGSYMFVTLKFDGASIGAVY SSLGIAAVFMPTLLGIVADKWLSAKWVYALCHVVGAITLFMAAEVTTPGAMFFVILLN SLAYMPTLGLINTISYYRLQSAGMDIVTDFPPIRIWGTIGFILAMWGVSFSGFELSHM QLYIGATLSVLLVLFTFTLPHIPVANQQKNQSWTSMLGLDAFALFKNKRMAIFFIFSM MLGAELQITNMFGNTFLHSFDKDPLFASSFIVQHASVMMSISQISETLFILTIPFFLS RYGIKNVMLISIVAWMLRFGLFAYGDPTPFGTVLLVLSMIVYGCAFDFFNISGSVFVE KEVRPEIRASAQGMFLMMTNGFGCILGGIVSGKVVEYYTQNGITDWQTVWLIFAGYSL VLAFAFVALFKYKHVRVPASSQPVAH" misc_feature 3271462..3272715 /gene="nupG" /locus_tag="STM3113" /note="nucleoside transporter; Region: 2A0110; TIGR00889" /db_xref="CDD:129967" misc_feature order(3271501..3271506,3271513..3271518,3271525..3271527, 3271624..3271626,3271777..3271782,3271786..3271794, 3271801..3271803,3271867..3271869,3271876..3271881, 3271888..3271890,3272110..3272112,3272119..3272124, 3272131..3272139,3272146..3272148,3272251..3272253, 3272263..3272265,3272422..3272427,3272437..3272439, 3272449..3272451,3272497..3272499,3272506..3272511, 3272518..3272523,3272530..3272532) /gene="nupG" /locus_tag="STM3113" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340866" protein_bind 3271469..3271489 /gene="nupG" /locus_tag="STM3113" /note="putative binding site for CRP, RegulonDB: STMS1H000048" /bound_moiety="CRP" gene complement(3272780..3275026) /gene="speC" /locus_tag="STM3114" /db_xref="GeneID:1254637" CDS complement(3272780..3274915) /gene="speC" /locus_tag="STM3114" /EC_number="4.1.1.17" /note="similar to E. coli ornithine decarboxylase isozyme (AAC76002.1); Blastp hit to AAC76002.1 (731 aa), 87% identity in aa 21 - 731" /codon_start=1 /transl_table=11 /product="ornithine decarboxylase isozyme" /protein_id="NP_462030.1" /db_xref="GeneID:1254637" /translation="MKSMNIAASGELIPRLSTHRNVVALDSTDFTDVAAVVITTADSR SGILALLKRTGFHLPVFMLADEPVSAPVGVTAVIVGNAQEWLELENAACRYEAELLPP FYGTLTQYVDMGNSTFACPGHQHGEFFRKHPAGRHFYDFFGENLFRADMCNADVKLGD LLIHEGSAKHAQKFAAKVFNADKTYFVLNGTSAANKVVTNALLTRGDLVLFDRNNHKS NHHGALIQAGATPVYLEAARNPFGFIGGIDAHCFDETYLRDQIRDVMPESADASRPFR LAIIQLGTYDGTIYNARQVVDKIGHLCDYILFDSAWVGYEQFINMMADTSPLRLELNE NDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIRGQARFCPHKRLNNAFMLHASTSPFYP LFAALDVNAKIHEGESGRRLWAECVALGIDARKAILARCKLLQPFIPLVVDGKPWQAY PTETIASNRRFFSFEPGAKWHGFEGYADDQYFVDPCKLLLTTPGIDADSGRYTEFGIP ATILAHYLRENGIVPEKCDLNSILFLLTPAESEEKLARLVAMLAQFERHIEDDTPLAD VLPTVFQKYPVRYRDYTLRELCQEMHNLYVSFDVKDLQKAMFRKESLPHVAMNPQDAN SAFIRGDVELVRISEAGGRIAAEGALPYPPGVLCVVPGEIWGGAAQRYFLALEEGINL LPGFSPELQGVYSETDADGIQRLYGYVLK" misc_feature complement(3272783..3274915) /gene="speC" /locus_tag="STM3114" /note="ornithine decarboxylase; Provisional; Region: PRK13578" /db_xref="CDD:237434" regulatory complement(3274926..3274931) /regulatory_class="ribosome_binding_site" /gene="speC" /locus_tag="STM3114" /note="putative RBS for speC; RegulonDB:STMS1H003151" regulatory complement(3275002..3275010) /regulatory_class="minus_10_signal" /gene="speC" /locus_tag="STM3114" /note="putative -10_signal for speC; RegulonDB:STMLTH004578" regulatory complement(3275018..3275026) /regulatory_class="minus_35_signal" /gene="speC" /locus_tag="STM3114" /note="putative -35_signal for speC; RegulonDB:STMLTH004578" gene 3275329..3276047 /gene="yqgA" /locus_tag="STM3115" /db_xref="GeneID:1254638" regulatory 3275329..3275334 /regulatory_class="ribosome_binding_site" /gene="yqgA" /locus_tag="STM3115" /note="putative RBS for yqgA; RegulonDB:STMS1H003152" CDS 3275340..3276047 /gene="yqgA" /locus_tag="STM3115" /note="similar to E. coli putative transport protein (AAC76003.1); Blastp hit to AAC76003.1 (235 aa), 83% identity in aa 1 - 235" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462031.1" /db_xref="GeneID:1254638" /translation="MVIGPFINAGAILFGGVIGALLSQRLPERIRVSMTSIFGLCSLG IGILLVMKCANLPVMVLATLVGALIGEFCLLEKGINGAVAKIQQLFMASGKKPTHDSF IQSYVAIIVLFCASGTGIFGAMHEGMTGDPNILIAKSFLDFFTAIIFACSLGIAVSAI CAPMLIIQLTLAACATLILPLTTPAMMGDFSAVGGLLLVATGLRVCGIKMFPVVNMLP ALLLAMPISAAWAMFFA" misc_feature 3275340..3276038 /gene="yqgA" /locus_tag="STM3115" /note="Uncharacterized membrane protein YqgA, affects biofilm formation [Function unknown]; Region: YqgA; COG1811" /db_xref="CDD:441416" gene 3276153..3276225 /gene="pheV" /locus_tag="STM3116" /db_xref="GeneID:1254639" tRNA 3276153..3276225 /gene="pheV" /locus_tag="STM3116" /product="tRNA-Phe" /db_xref="GeneID:1254639" gene complement(3276387..3276826) /locus_tag="STM3117" /db_xref="GeneID:1254640" CDS complement(3276387..3276821) /locus_tag="STM3117" /codon_start=1 /transl_table=11 /product="putative lactoylglutathione lyase" /protein_id="NP_462032.1" /db_xref="GeneID:1254640" /translation="MLFFNVASLKYKHHESIQMIIDRIDHLVLTVSDISTTIRFYEEV LGFSAVTFKQNRKALIFGAQKINLHQQEMEFEPKASRPTPGSADLCFITSTPINDVVS EILQAGISIVEGPVERTGATGEIMSIYIRDPDGNLIEISQYV" misc_feature complement(3276393..3276761) /locus_tag="STM3117" /note="Human glyoxalase domain-containing protein 5 and similar proteins; Region: GLOD5; cd07253" /db_xref="CDD:319916" misc_feature complement(order(3276393..3276395,3276405..3276407, 3276411..3276413,3276417..3276422,3276429..3276431, 3276456..3276467,3276486..3276488,3276513..3276515, 3276522..3276527,3276540..3276575,3276627..3276641, 3276684..3276689,3276738..3276761)) /locus_tag="STM3117" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:319916" regulatory complement(3276821..3276826) /regulatory_class="ribosome_binding_site" /locus_tag="STM3117" /note="putative RBS for STM3117; RegulonDB:STMS1H003154" gene complement(3276832..3278170) /locus_tag="STM3118" /db_xref="GeneID:1254641" CDS complement(3276832..3278157) /locus_tag="STM3118" /note="similar to E. coli putative coenzyme A transferase (AAC75957.1); Blastp hit to AAC75957.1 (492 aa), 27% identity in aa 187 - 458, 24% identity in aa 8 - 169" /codon_start=1 /transl_table=11 /product="putative acetyl-CoA hydrolase" /protein_id="NP_462033.1" /db_xref="GeneID:1254641" /translation="MMNVNAVYAEKCVTPDEAVTLITSGSHLSMGMFAAEPPALLNAL AKRAKRGEINDLRVYCYETASIAGNTIFRYELSDYIHLYSMFITGIERALIRQGIESS GRKIVNYVPSNFHQATRLLADDIGIDTFIHTVSPMDKYGYFNFGTGNDYSTRIARTAK KLIVEVNKYMPRVHGEGAAIHISEIDAIVENHVPLIELPIRTAVAEDIAISQIIASLV PDGACLQMGVGALPELICNALKEHNDLGVHTEALNPGLVSLIQQGVVTNQRKNIDRGM SVFTFAMGQKDMYDYLNDNPSFFSRPVDYVNDPGIIAQNENVVSINATLQIDLTGACN SEYLLGHQYSASGGQLDFVRGAYASKGGRSIITTRSTAANDTISRIVPRLEGPVTTPR TDTHWIVTEFGSVNLKGLSSTERALSIIELAHPNFRQQLRVDAKKMHLI" misc_feature complement(3276841..3278136) /locus_tag="STM3118" /note="Propionyl CoA:succinate CoA transferase [Energy production and conversion]; Region: ACH1; COG0427" /db_xref="CDD:440196" regulatory complement(3278165..3278170) /regulatory_class="ribosome_binding_site" /locus_tag="STM3118" /note="putative RBS for STM3118; RegulonDB:STMS1H003155" gene complement(3278182..3278716) /locus_tag="STM3119" /db_xref="GeneID:1254642" CDS complement(3278182..3278709) /locus_tag="STM3119" /note="similar to E. coli putative aldehyde dehydrogenase (AAC74469.1); Blastp hit to AAC74469.1 (681 aa), 29% identity in aa 530 - 661" /codon_start=1 /transl_table=11 /product="putative monoamine oxidase" /protein_id="NP_462034.1" /db_xref="GeneID:1254642" /translation="MNTLLPAYKTISEGRYREISGLYWEDFHPGDVFEHRPGRTVLDA DNVWFTLLTLNVQPVHFDAAYASKTEWKKLLVDSTFTLALLTGMSVRTVSAKVVANLG WDKVQAVHPVFAGDTLYAESTVLSKRLSNSRPGQGIVTVRTCGINQNGVEVMRFERTM LVYCCGCSPEEDAAY" misc_feature complement(3278185..3278709) /locus_tag="STM3119" /note="(R)-specific enoyl-CoA hydratase RipB/Ich; Region: RipB_Ich; NF038241" /db_xref="CDD:439541" regulatory complement(3278711..3278716) /regulatory_class="ribosome_binding_site" /locus_tag="STM3119" /note="putative RBS for STM3119; RegulonDB:STMS1H003156" gene complement(3278733..3279583) /locus_tag="STM3120" /db_xref="GeneID:1254643" CDS complement(3278733..3279575) /locus_tag="STM3120" /EC_number="4.1.3.6" /note="similar to E. coli citrate lyase beta chain (acyl lyase subunit) (AAC73717.1); Blastp hit to AAC73717.1 (307 aa), 31% identity in aa 20 - 299" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462035.1" /db_xref="GeneID:1254643" /translation="MPDISHTPTRSWLFTPAIRPERFIKAVESAADISIIDLEDSVTP NDKAQARKIAMQFLSSRPNSSLKIALRINGMNTHAGIEDLHMLLECRFFPDYIILPKT ESAAHLQIVDSLIMMAGSDTRLIGIIESVVGLNAVESIADATPRLCGLMFGAADMAAD IGATPAWEPLALARARIVAACAMKGLLAIDAPFFDIGDFSGLKEETLQALSFGFSAKS AIHPAQISVINAAFTPTTAEINHARAVLTENAKGVGIVSGMMIDAAVARQARRLLARA GIFS" misc_feature complement(3278748..3279551) /locus_tag="STM3120" /note="itaconate degradation C-C-lyase RipC; Region: RipC_Ccl; NF038242" /db_xref="CDD:439542" regulatory complement(3279578..3279583) /regulatory_class="ribosome_binding_site" /locus_tag="STM3120" /note="putative RBS for STM3120; RegulonDB:STMS1H003157" gene 3279662..3280545 /locus_tag="STM3121" /db_xref="GeneID:1254644" regulatory 3279662..3279667 /regulatory_class="ribosome_binding_site" /locus_tag="STM3121" /note="putative RBS for STM3121; RegulonDB:STMS1H003158" CDS 3279667..3280545 /locus_tag="STM3121" /note="putative transcriptional regulator (gi|5852589)" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462036.1" /db_xref="GeneID:1254644" /translation="MELRHIRYFLAVAEERHFTRAATKLGIGQPPLSQQIKDLERELG AQLFRRVPHGAELTEAGKAFYDVVKGMPATATRAVLAAQRVARGESGVLRVGFTASAA FNSVVPGAIRTFKRAYPDVRLQLEEGNTTQLADELNEGSLDVAFLRPGFTGNERFQLR LLSEEPMVIVLAETHPAAACKQIALSILKDEFFLLFPREIGLSLYDAVIKACGKAGFE PKIGQLVPQISSVINLVSAEMGVSMVPDSMRQVNVKGVVYRPVADQMPVAKLALAYRR GDTSPTLRNFILKVTG" misc_feature 3279673..3279852 /locus_tag="STM3121" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature 3279943..3280527 /locus_tag="STM3121" /note="The C-terminal substrate binding domain of LysR-type transcrptional regulator BudR, which is responsible for activation of the expression of the butanediol operon genes; contains the type 2 periplasmic binding fold; Region: PBP2_BudR; cd08451" /db_xref="CDD:176142" misc_feature order(3279955..3279957,3279979..3279981,3279988..3279993, 3279997..3280002,3280009..3280011,3280033..3280035, 3280039..3280041,3280045..3280047,3280180..3280182, 3280282..3280287,3280342..3280347,3280363..3280368, 3280372..3280377,3280429..3280431) /locus_tag="STM3121" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176142" misc_feature order(3279958..3279960,3280108..3280110,3280252..3280257, 3280276..3280278) /locus_tag="STM3121" /note="putative substrate binding pocket [chemical binding]; other site" /db_xref="CDD:176142" gene complement(3280593..3282338) /locus_tag="STM3122" /db_xref="GeneID:1254645" CDS complement(3280593..3282332) /locus_tag="STM3122" /EC_number="3.1.6.1" /note="similar to E. coli putative sulfatase (AAC74571.1); Blastp hit to AAC74571.1 (571 aa), 27% identity in aa 120 - 327, 43% identity in aa 322 - 358, 37% identity in aa 44 - 86, 31% identity in aa 435 - 471" /codon_start=1 /transl_table=11 /product="putative arylsulfatase" /protein_id="NP_462037.1" /db_xref="GeneID:1254645" /translation="MKKEVTLATLSIIFSGTAHSTQNERPDIIVIIADDMGYSDITPF GGEIPTPNLQAMAENGVRMSQYYTSPMSAPARAMLLTGNTSQQAGIGGMWWYENTIGK EGYELRLTDRVTTMAERFKDAGYNTLMAGKWHLGFTPGSTPKDRGFRHSFALMGGGAS HFDDAVPLGTVEIFHTYYTRDNQRISLPSSFYSSEAYASQINRWISETPREQPIFAWL AFTAPHDPLQAPDEWISRFKSQYEQGYADVYRQRIARLKKLGFLRDDIPLPGLELDKE WQAMTPEQQKYTAKVMQVYAAMIANMDAQIGTVIETLKKTGRDKNTILVFLSDNGVNP AEGFHYESEPDFWKQFDNRYENIGRKNSFISYGPHWADVSNAPYGRYHKTTSGQGGIN TSFMISGPGIIHHGAIDNATMAAYDVAPTLYEFAGIDASKSLSERPTLPMIGVSFKRY LTGESLHAPRTQYGVELHNQAAWIDGEWKLRRLVTVFPQAGNAPWELFNLQRDPLETH NLAANYADKVKILSSAYEAFAKQTMVLYAKGKLIDYVGIDSKTGRYLAVDPQTLQPVP APLAIPLDTKSDQ" misc_feature complement(3280803..3282263) /locus_tag="STM3122" /note="Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins; Region: PAS_like; cd16025" /db_xref="CDD:293749" misc_feature complement(order(3281184..3281186,3281343..3281348, 3281661..3281663,3281931..3281933,3281937..3281939, 3282117..3282119,3282228..3282233)) /locus_tag="STM3122" /note="active site" /db_xref="CDD:293749" misc_feature complement(order(3281184..3281186,3281343..3281345, 3281661..3281663,3281931..3281933,3281937..3281939, 3282117..3282119,3282228..3282233)) /locus_tag="STM3122" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:293749" regulatory complement(3282333..3282338) /regulatory_class="ribosome_binding_site" /locus_tag="STM3122" /note="putative RBS for STM3122; RegulonDB:STMS1H003159" gene complement(3282401..3283592) /locus_tag="STM3123" /db_xref="GeneID:1254646" CDS complement(3282401..3283585) /locus_tag="STM3123" /note="similar to E. coli putative arylsulfatase regulator (AAC76803.1); Blastp hit to AAC76803.1 (411 aa), 36% identity in aa 4 - 248, 34% identity in aa 230 - 387" /codon_start=1 /transl_table=11 /product="putative arylsulfatase regulator" /protein_id="NP_462038.1" /db_xref="GeneID:1254646" /translation="MLNLNTLRQQQIPVMTEYRAQIPFHILAKPIGPACNLACRYCYY PQGETPVEKMNESTLEIFICRYIAAQPASAREINFVWQGGEPLLAGIGFYKKVIALQQ RYAPDGVTISNSLQTNATLLNDAWCRLFRDNNFTIGISLEGSEDLQNHHRPGKRGEAS YPAVLRGITLLQHYRVDFNVLIVVHDDMARHAAAIYDHVVSLGVRYLQFQPLMNEGNA LQQRYQLSADNWGRFMIDIWRQWRKRGDMGRVFVINIEQAWAQYFTHISATCVHSARC GTNLVMEPDGKLYACDHLINSQHYLGQLANNTLAPAVDSATRLPFGIKKSQRRECQRC SVKIVCQGGCPAHINSAGYNRLCSGYYSFFTEILAPLRAWPRDLNGLKAWRADVMGRF SG" misc_feature complement(3282455..3283513) /locus_tag="STM3123" /note="anaerobic sulfatase-maturating enzyme; Region: sulfatase_rSAM; TIGR03942" /db_xref="CDD:188457" regulatory complement(3283587..3283592) /regulatory_class="ribosome_binding_site" /locus_tag="STM3123" /note="putative RBS for STM3123; RegulonDB:STMS1H003160" gene 3284090..3284780 /locus_tag="STM3124" /db_xref="GeneID:1254647" regulatory 3284090..3284095 /regulatory_class="ribosome_binding_site" /locus_tag="STM3124" /note="putative RBS for STM3124; RegulonDB:STMS1H003161" CDS 3284097..3284780 /locus_tag="STM3124" /note="contains a CheY-like receiver domain and a HTH DNA-binding domain; similar to E. coli putative regulator (AAC76545.1); Blastp hit to AAC76545.1 (200 aa), 48% identity in aa 138 - 200" /codon_start=1 /transl_table=11 /product="putative response regulator" /protein_id="NP_462039.1" /db_xref="GeneID:1254647" /translation="MSALSTTGHNDGITLHCLQSIAQLIPLSSAVFYRVNAYLKPEAY VLHNISNSTHQQYLEHFQPLDPLSPSRFGQQVVTVATMTPGICARHRHYYHEFMLPNH VCDMIEIFIRRGHRIIAGISLMRDIPFSSEERLRAQAVQPLLGLAIHDSLQEDNDLES ILTAKEREIVGMVCEGASNKLIARQLNISLSTVKTHLRNIFAKTEVINRTELVSRTRM SSVQHAQHM" misc_feature <3284358..3284741 /locus_tag="STM3124" /note="DNA-binding transcriptional regulator, CsgD family [Transcription]; Region: CsgD; COG2771" /db_xref="CDD:442052" misc_feature <3284568..3284741 /locus_tag="STM3124" /note="DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription]; Region: CitB; COG2197" /db_xref="CDD:441799" gene complement(3284884..3285445) /locus_tag="STM3125" /db_xref="GeneID:1254648" CDS complement(3284884..3285441) /locus_tag="STM3125" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462040.1" /db_xref="GeneID:1254648" /translation="MSSVPWFKSTLMNMVLRDLSGWRCEKLTEHSAVLHLNAFTQVIC HAQQKRLFMASIHSCEFRVKGTINYPLQGKIRVHQPGWLKRYPVIFTGSKSTAGLINY LNCFPNLQQALSELDYRRFTLVLHHKEWYCSIELWAASEVVCKMPPLRRYLRLERHQR VLLLSVINMINQAMNQWLQQDTDAR" misc_feature complement(3284920..3285372) /locus_tag="STM3125" /note="Protein of unknown function (DUF3156); Region: DUF3156; pfam11354" /db_xref="CDD:431835" gene complement(3285419..3286924) /locus_tag="STM3126" /db_xref="GeneID:1254649" CDS complement(3285419..3286918) /locus_tag="STM3126" /note="similar to E. coli proline permease transport protein (AAC73505.1); Blastp hit to AAC73505.1 (457 aa), 25% identity in aa 4 - 415" /codon_start=1 /transl_table=11 /product="putative amino acid transporter" /protein_id="NP_462041.1" /db_xref="GeneID:1254649" /translation="MFKNRLASHLERGVIGFPTTLASSVGLIMASPVILTVTSGFGSG GDTFALAVLLAFIMMQAQITTFAEAATLIPTTGSVYDYISCGMGRFFAITGALCAYLI VHIFAGTAETILAGVMALVNFESVSEHVAMQHNTWMVGVGMVVVFGLLNAIGVEVFGK VEVFLTFGMWTTLTIFGLCGILLSPVTHHSGWFGAPLDVSNLSGLFGYIGMAMFMFVG CELVTPMAPEIKKAHRTIPRAMALGLLAVAGCMFLYGAAINRQVNNVVVDAANHIFLL DTPMAIPAFANRVMGHVGQYWLGVGLLLAGCATINTLMAAVPRIIYGMALDGALPRFL TWLHPRFKTPVIAIAFGVAIPCLHAWYLNGDIDHIVPLILAAVCAWGVAYLLVTLSVV ILRIRRPDLPRAYRAPWFPLPQIISSVGIIIAIINIAPPGMNSRDVLIPFGIMLGLTA AYALFWTLCVQRVNPFLPLPVEEVVERAMGNYEKRNNEEMTPDVLRPLV" misc_feature complement(3285551..3286909) /locus_tag="STM3126" /note="Serine transporter YbeC, amino acid:H+ symporter family [Amino acid transport and metabolism]; Region: PotE; COG0531" /db_xref="CDD:440297" regulatory complement(3285440..3285445) /regulatory_class="ribosome_binding_site" /locus_tag="STM3125" /note="putative RBS for STM3125; RegulonDB:STMS1H003162" regulatory complement(3286919..3286924) /regulatory_class="ribosome_binding_site" /locus_tag="STM3126" /note="putative RBS for STM3126; RegulonDB:STMS1H003163" gene complement(3287127..3287509) /locus_tag="STM3127" /db_xref="GeneID:1254650" CDS complement(3287127..3287501) /locus_tag="STM3127" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462042.1" /db_xref="GeneID:1254650" /translation="MQAFKLNQPVPELQPIGSVSLLGALPTEGDPQVAVAMIYGKPED VFTCGLFSSTRGGFTMIYPFTEHATVLEGEVELTVAGQEPIRFSPGDSWFVEQGTEVA WKVLTPRFVKHYLAKVESHKQG" misc_feature complement(3287160..3287492) /locus_tag="STM3127" /note="Predicted enzyme of the cupin superfamily [General function prediction only]; Region: COG3450" /db_xref="CDD:442673" regulatory complement(3287504..3287509) /regulatory_class="ribosome_binding_site" /locus_tag="STM3127" /note="putative RBS for STM3127; RegulonDB:STMS1H003164" gene complement(3287516..3288828) /locus_tag="STM3128" /db_xref="GeneID:1254651" CDS complement(3287516..3288817) /locus_tag="STM3128" /note="similar to E. coli probable oxidoreductase (AAC74383.1); Blastp hit to AAC74383.1 (426 aa), 35% identity in aa 7 - 414" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_462043.1" /db_xref="GeneID:1254651" /translation="MNTKIDALNYYGATKKYPLHFPALQDDIDADVVIIGGGFSGINT ALELAEQGITNVVVLEARHLGYGGTGRNGGQVMAGIGHDIEAVKKYVGAAGMETLFKI SNLGAGIIRERIRKYHIDADFVPGYGYLAYNQRQLKTLQQWEKEFKAATPEDDIELYT GKDVQQVIGSDVYCGVLKHMGGGHVHSLNLLLGSAQAANSLGVKIFEYSPVVEVSYGK TVRVRTAMGSVKAAKLLWACDSFLNNLEPEIYKKTLVTYSYQVSTEPLSSELVERISP LRGAFSDIRPVINYYRLTKENRLLFGSATRFLEYTPHDFAAWNRTLLTEVFPYLKDVK IDFAWGGPMACSANLFPQIGTLREHNNVFYVQGYSGFGVTPSHIVCKILAEGINGGSE RYRLMSSIPHATIYGRDSLRLLLVSAGKLIHQTAGFWKGRN" misc_feature complement(3287630..3288736) /locus_tag="STM3128" /note="Glycine/D-amino acid oxidase (deaminating) [Amino acid transport and metabolism]; Region: DadA; COG0665" /db_xref="CDD:440429" regulatory complement(3288823..3288828) /regulatory_class="ribosome_binding_site" /locus_tag="STM3128" /note="putative RBS for STM3128; RegulonDB:STMS1H003165" gene 3288967..3290463 /locus_tag="STM3129" /db_xref="GeneID:1254652" regulatory 3288967..3288972 /regulatory_class="ribosome_binding_site" /locus_tag="STM3129" /note="putative RBS for STM3129; RegulonDB:STMS1H003166" CDS 3288979..3290463 /locus_tag="STM3129" /EC_number="1.2.1.39" /note="similar to E. coli phenylacetaldehyde dehydrogenase (AAC74467.1); Blastp hit to AAC74467.1 (500 aa), 44% identity in aa 7 - 500" /codon_start=1 /transl_table=11 /product="putative NAD-dependent aldehyde dehydrogenase" /protein_id="NP_462044.1" /db_xref="GeneID:1254652" /translation="MSDVTLLAEVTTFLRQRHGQFIAGERQAGNGTNFSVTNPATGKI IADVVSATPAQAEEAMQSARRAFDVWRKMPTLQRGALLLKLADTLAAHREELAQLESV CSGKTIMLSRGLELDQSVAFLRYFAGWAGKITGETLNVSLPSMGEERYTAFTQRQPIG VVVGIVPWNFSIMIAIWKLAAALVCGCTIVIKPSEYTPLTLLRVAELAKEAGFPDGVI NVVNGAGGEIAQQLIAHPDCAKVSFTGSVATGEKVRRSATSSGKRVTLELGGKNAALF LNDLTAQAMVNGILEAGYLNQGQICAAAERFYLPQEKLDTVMTLLRQRLSEIVPGSPL DEKTVMGPLANQVQLEKVLRLIQRAREEGDTIVYGGETLPGEGYFLQPTAVKVRSKNS TLMHEETFGPVCSFIGYQNEKEALSHINDSPFGLAASVWSENISKALRYAEDIDAGMV WVNMHTFLDPAVPFGGMKGSGIGREFGSAFIDDYTELKSVMVRY" misc_feature 3289033..3290460 /locus_tag="STM3129" /note="Escherichia coli NAD+-dependent phenylacetaldehyde dehydrogenase PadA-like; Region: ALDH_PADH_NahF; cd07113" /db_xref="CDD:143431" misc_feature order(3289471..3289485,3289507..3289509,3289552..3289554, 3289558..3289563,3289705..3289716,3289723..3289725, 3289732..3289737,3289777..3289785,3289879..3289881, 3290170..3290172,3290176..3290178,3290254..3290256, 3290368..3290370) /locus_tag="STM3129" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143431" misc_feature order(3289483..3289485,3289777..3289779,3289870..3289872, 3289879..3289881) /locus_tag="STM3129" /note="catalytic residues [active]" /db_xref="CDD:143431" gene complement(3290599..3290989) /locus_tag="STM3130" /db_xref="GeneID:1254653" CDS complement(3290599..3290979) /locus_tag="STM3130" /note="similar to E. coli orf, hypothetical protein (AAC77282.1); Blastp hit to AAC77282.1 (133 aa), 47% identity in aa 32 - 125" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462045.1" /db_xref="GeneID:1254653" /translation="MMTPTIPVALFDRLLVEGISPHELVRRKLMCLFNSCAVPGGETL PPLLTRGMPEWHEVNVGDKRVLNWFCRELRAAILRYEPSINMLKVSVKDAHHQTLALS LEAMLQDESEPLRLEIAYSNGRWR" misc_feature complement(3290602..3290805) /locus_tag="STM3130" /note="anti-adapter protein IraD; Region: iraD; PRK14128" /db_xref="CDD:184525" gene complement(3290979..3291471) /locus_tag="STM3131" /db_xref="GeneID:1254654" CDS complement(3290979..3291464) /locus_tag="STM3131" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462046.1" /db_xref="GeneID:1254654" /translation="MDAIFLKLDNIKGESQVEGFEDQIEIMSYSHNVAMQVNNDVSLT ERTSGRAHVGEMSLTKFVDLATPVLNEYCCSGRLIRTAVLTLCRNDDGKMRSLIVYTL TNVLISQLSVSGGAGGKPVETMSLNFTKIEWQITAEKSDGAQQESRTSVWDLAMNQIG K" misc_feature complement(3290991..3291464) /locus_tag="STM3131" /note="Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion, and vesicular transport]; Region: Hcp; COG3157" /db_xref="CDD:442391" regulatory complement(3290984..3290989) /regulatory_class="ribosome_binding_site" /locus_tag="STM3130" /note="putative RBS for STM3130; RegulonDB:STMS1H003167" regulatory complement(3291466..3291471) /regulatory_class="ribosome_binding_site" /locus_tag="STM3131" /note="putative RBS for STM3131; RegulonDB:STMS1H003168" gene complement(3292190..3293120) /locus_tag="STM3132" /db_xref="GeneID:1254655" CDS complement(3292190..3293113) /locus_tag="STM3132" /note="putative xylanase" /codon_start=1 /transl_table=11 /product="chitin deacetylase" /protein_id="NP_462047.1" /db_xref="GeneID:1254655" /translation="MGYLKLPEGKRIAVNLGVDVDAQSLWLGGFNRPSPSFMSRGEFG AQVGVPRLLKLFKENNIKTTFFIPGHTVDTFPEIIKAIFDAGHEIAHHGYYHENPTLV NRDTERRLMDLAFACYKRHFGIRPVGYRSPYWDYSENTLDLLEEAGFLYDSSLMARDL VPYHPQRWQVNWETGNIAGPASAILEIPVSWYLDDFPALAYTGNQEGMSDTDGVLRRW KDIFTYAYHHQENSLYAMALHPQIIGHGHHMMMLLRLIEHIKGHDGVWFATCEEIASV WVDDEEDRQKMLRPDVRGVAPVPDDYGWPGK" misc_feature complement(3292283..3293077) /locus_tag="STM3132" /note="Catalytic domain of Helicobacter pylori peptidoglycan deacetylase (HpPgdA) and similar proteins; Region: CE4_HpPgdA_like; cd10938" /db_xref="CDD:200563" misc_feature complement(order(3292397..3292399,3292826..3292828, 3292838..3292840,3293051..3293053,3293057..3293059)) /locus_tag="STM3132" /note="active site" /db_xref="CDD:200563" misc_feature complement(order(3292355..3292357,3292364..3292369, 3292373..3292381,3292442..3292444,3292451..3292456, 3292463..3292468,3292505..3292513,3292517..3292525, 3292538..3292546,3292634..3292654,3292706..3292708, 3292712..3292717,3292775..3292777,3292784..3292789, 3292796..3292801,3292808..3292813,3292820..3292825, 3292829..3292834,3292889..3292897,3292904..3292906, 3292961..3292963,3292973..3292975,3292985..3292990, 3292994..3293002,3293006..3293011,3293030..3293035)) /locus_tag="STM3132" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:200563" regulatory complement(3293115..3293120) /regulatory_class="ribosome_binding_site" /locus_tag="STM3132" /note="putative RBS for STM3132; RegulonDB:STMS1H003169" gene complement(3293152..3294035) /locus_tag="STM3133" /db_xref="GeneID:1254656" CDS complement(3293152..3294030) /locus_tag="STM3133" /codon_start=1 /transl_table=11 /product="putative amidohydrolase" /protein_id="NP_462048.1" /db_xref="GeneID:1254656" /translation="MPRNFTVSACQYIVTEINTFEDFITKVRILLNKSQGADVVIFPE LFTIELFTLLKKWQERPISHLTLIDQFTDAYKQLFQQEAKERGQFIIAGSHLEQTGAD RYENVAHIWGPDGEHYAHSKTHIFPAERGWYTQEGDKMAVFQLPFAKVGFNICYEAEI PECAATLAEQGVELILTPSATFTEQGFWRVRHCCHARCIENQIYLVHCCLGGNPGGPL PGCWARSSILSPCDVVWKNPQGIIAEAHVNQEDVISGEINLDVLYENRLGGAATTFKD RRRKAGIYNIWPSHIK" misc_feature complement(3293188..3294018) /locus_tag="STM3133" /note="Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases); Region: nitrilase_Rim1_like; cd07574" /db_xref="CDD:143598" misc_feature complement(order(3293491..3293493,3293554..3293559, 3293563..3293568,3293653..3293655,3293665..3293667, 3293899..3293901)) /locus_tag="STM3133" /note="putative active site [active]" /db_xref="CDD:143598" misc_feature complement(order(3293566..3293568,3293665..3293667, 3293899..3293901)) /locus_tag="STM3133" /note="catalytic triad [active]" /db_xref="CDD:143598" misc_feature complement(order(3293194..3293208,3293359..3293364, 3293431..3293436,3293440..3293448,3293452..3293457, 3293533..3293538,3293545..3293559,3293563..3293565, 3293617..3293625,3293641..3293643,3293653..3293664)) /locus_tag="STM3133" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:143598" regulatory complement(3294030..3294035) /regulatory_class="ribosome_binding_site" /locus_tag="STM3133" /note="putative RBS for STM3133; RegulonDB:STMS1H003170" gene complement(3294426..3295741) /locus_tag="STM3134" /db_xref="GeneID:1254657" CDS complement(3294426..3295730) /locus_tag="STM3134" /note="similar to E. coli transport of hexuronates (AAC76128.1); Blastp hit to AAC76128.1 (472 aa), 47% identity in aa 43 - 454" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_462049.1" /db_xref="GeneID:1254657" /translation="MKMTKLRWWIIGLVCVGTIVNYLSRSSLSVAAPAMMKELHFDEQ QYSWVVSAFQLCYTIAQPITGYLMDVIGLKIGFFIFALLWSLINMAHALAGGWISLAF LRGLMGLTEASAIPAGIKASAEWFPTKERGIAGGLFNIGTSIGAMLAPPLVVWAMLTF ADSGIGTEMAFVITGGIGVLFAITWFLIYNSPNKHPWITHKELRYIEDGQESYLQDDN KKPAVKEIVKKRNFWALAITRFLADPAWGTLSFWMPLYLINVMHLPLKEIAMFAWLPF LAADFGCVAGGFLAKFFMEKMHMTTINARRCSFTIGAVLMISIGFVSITTNPYVAIAL MSIGGFAHQTLSTVVITMSADLFKKNEVATVAGLAGSAAWMGQLSFNLFMGALVAIIG YGPFFIALSLFDIIGAIILWVLIKDPEKHHPPMTEQPLASHR" misc_feature complement(3294489..3295712) /locus_tag="STM3134" /note="Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily; Region: MFS_ExuT_GudP_like; cd17319" /db_xref="CDD:340877" misc_feature complement(order(3294600..3294602,3294609..3294614, 3294621..3294626,3294633..3294635,3294681..3294683, 3294693..3294695,3294705..3294710,3294882..3294884, 3294894..3294896,3294978..3294980,3294987..3294995, 3295002..3295007,3295014..3295016,3295293..3295295, 3295302..3295307,3295314..3295316,3295374..3295376, 3295383..3295391,3295395..3295400,3295548..3295550, 3295644..3295646,3295653..3295658,3295665..3295670)) /locus_tag="STM3134" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340877" regulatory complement(3295736..3295741) /regulatory_class="ribosome_binding_site" /locus_tag="STM3134" /note="putative RBS for STM3134; RegulonDB:STMS1H003171" gene 3296082..3297319 /locus_tag="STM3135" /db_xref="GeneID:1254658" regulatory 3296082..3296090 /regulatory_class="minus_35_signal" /locus_tag="STM3135" /note="putative -35_signal for STM3135; RegulonDB:STMLTH004579" regulatory 3296109..3296117 /regulatory_class="minus_10_signal" /locus_tag="STM3135" /note="putative -10_signal for STM3135; RegulonDB:STMLTH004579" regulatory 3296122..3296127 /regulatory_class="ribosome_binding_site" /locus_tag="STM3135" /note="putative RBS for STM3135; RegulonDB:STMS1H003172" CDS 3296135..3297319 /locus_tag="STM3135" /EC_number="4.2.1.8" /note="mannonate dehydratase. (SW:UXUA_SALTY)" /codon_start=1 /transl_table=11 /product="putative mannonate hydrolase" /protein_id="NP_462050.1" /db_xref="GeneID:1254658" /translation="MKQTWRWYGPNDPVTLSDVRQAGATGVVTALHHIPNGEIWSVDE IQKRKAIVEEAGLEWSVVESVPIHEDIKTHTGQYDLWIKNYQQTLRNLAQCGIYTVCY NFMPVLDWTRTDLEYVLPDGSKALRFDQIEFAAFELHILKRPGAEADYTAEEIAQAER RFATMSEEDKARLTRNIIAGLPGAEEGYTLDQFRQHLATYKDIDKAKLREHFAYFLKA IIPVADEVGVRMAVHPDDPPRPILGLPRIVSTIEDMQWMVETVNSMANGFTMCTGSYG VRADNDLVDMIKQFGPRIYFTHLRSTLREENPKTFHEAAHLHGDVDMYEVVKAIVEEE HRRKAEGSDDLIPMRPDHGHQMLDDLKKKTNPGYSAIGRLKGLAEVRGVELAIQRAFF SK" misc_feature 3296135..3297310 /locus_tag="STM3135" /note="D-mannonate dehydratase [Carbohydrate transport and metabolism]; Region: UxuA; COG1312" /db_xref="CDD:440923" gene 3297418..3298902 /locus_tag="STM3136" /db_xref="GeneID:1254659" regulatory 3297418..3297423 /regulatory_class="ribosome_binding_site" /locus_tag="STM3136" /note="putative RBS for STM3136; RegulonDB:STMS1H003173" CDS 3297430..3298902 /locus_tag="STM3136" /EC_number="1.1.1.57" /note="similar to E. coli D-mannonate oxidoreductase (AAC77279.1); Blastp hit to AAC77279.1 (486 aa), 79% identity in aa 4 - 486" /codon_start=1 /transl_table=11 /product="putative D-mannonate oxidoreductase" /protein_id="NP_462051.1" /db_xref="GeneID:1254659" /translation="MEQNIATAQVSVARPNWDKSRLVSRIVHLGCGAFHRAHQALFTH HLLEKSDSDWGICEVNLMPGNDARLIANLKAQNLLYTVAERGAESTELKIIGSMKEAL HPEFDGHAGILAAMARPETAIVSLTVTEKGYCTDPASGELDVNNPLIQNDLAHPQQPK SAIGYIVEALNMRREQGLKAFTVLSCDNVRENGHVAKAAVLGLAKARDAALAAWIADN VTFPCTMVDRIVPAATEETLQLVADQLGVYDPCAIACEPFRQWVIEDNFVNGRPDWDT VGAQFVADVVPFEMMKLRMLNGSHSFLAYLGYLGGYDTIADTMTNPAYRRAALALMLD EQAPTLSMPEGTDLEGYANLLIARFTNPSLKHRTWQIAMDGSQKLPQRLLDPVRLHLQ QGDDYRRLTLGVAGWMRYVGGVDEQGKTIDVVDPLLAQYQAIHQQYQTPEERVRGLLA IESIFGNDLPKNHEFVQAVTDAYQQLLQNGAKATVEALAK" misc_feature 3297433..3298893 /locus_tag="STM3136" /note="D-mannonate oxidoreductase; Provisional; Region: PRK15037" /db_xref="CDD:184997" gene 3298901..3300326 /locus_tag="STM3137" /db_xref="GeneID:1254660" regulatory 3298901..3298906 /regulatory_class="ribosome_binding_site" /locus_tag="STM3137" /note="putative RBS for STM3137; RegulonDB:STMS1H003174" CDS 3298914..3300326 /locus_tag="STM3137" /EC_number="5.3.1.12" /note="similar to E. coli uronate isomerase (AAC76127.1); Blastp hit to AAC76127.1 (470 aa), 67% identity in aa 1 - 468" /codon_start=1 /transl_table=11 /product="putative uronate isomerase" /protein_id="NP_462052.1" /db_xref="GeneID:1254660" /translation="MATFMTEDFLLKNDIARTLYHKYAAPMPIYDFHCHLSPQEIADD RRFDNLGQIWLEGDHYKWRALRSAGVDESLITGKETSDYEKYMAWANTVPKTLGNPLY HWTHLELRRPFGITGTLFGPDTAESIWTQCNEKLATPAFSARGIMQQMNVRMVGTTDD PIDSLEYHRQIAADDSIDIEVAPSWRPDKVFKIELDGFVDYLRKLEAAADVSITRFDD LRQALTRRLDHFAACGCRASDHGIETLRFAPVPDDAQLDAILGKRLAGETLSELEIAQ FTTAVLVWLGRQYAARGWVMQLHIGAIRNNNTRMFRLLGPDTGFDSIGDNNISWALSR LLDSMDVTNELPKTILYCLNPRDNEVLATMIGNFQGPGIAGKVQFGSGWWFNDQKDGM LRQLEQLSQMGLLSQFVGMLTDSRSFLSYTRHEYFRRILCNLLGQWAQDGEIPDDEAM LSRMVQDICFNNAQRYFTIK" misc_feature 3298929..3300314 /locus_tag="STM3137" /note="Glucuronate isomerase [Carbohydrate transport and metabolism]; Region: UxaC; COG1904" /db_xref="CDD:441508" gene complement(3300626..3301691) /locus_tag="STM3138" /db_xref="GeneID:1254661" CDS complement(3300626..3301684) /locus_tag="STM3138" /note="similar to E. coli methyl-accepting chemotaxis protein I, serine sensor receptor (AAC77311.1); Blastp hit to AAC77311.1 (551 aa), 30% identity in aa 319 - 463" /codon_start=1 /transl_table=11 /product="putative methyl-accepting chemotaxis protein" /protein_id="NP_462053.1" /db_xref="GeneID:1254661" /translation="MFKKVLGLRHWNNNVVKIPPPAAESGANASDVVVDTPEPYERIL CQKILMGISTIDIIRNAIIKSCEQLNIEKERINELNEQNDKARSSLKSLVEFITEIGT TSSDIGCRMGDLNTSLTQINACIKEIQKIANQTNLIAINSAIEAARVGDAGRGFSVIS KEVKNLSEDVKHSSKSVSTLTSVIKDNTARVSEVLDNQQPVIDNITTNINQIVESIGI VIDKSLSMKSVMQYISTVQFLNIVKVDHVIWKMEVYKLLLNKDINSKITMHDQCRLGK WYYGFEGQQFSNYYSFRSLEAPHKEVHTAGHSALNYFAAGDMNAMSQELDRMERSSNE VVNQLEMLAVDLLKETTL" misc_feature complement(3300980..>3301465) /locus_tag="STM3138" /note="Methyl-accepting chemotaxis protein (MCP) [Signal transduction mechanisms]; Region: Tar; COG0840" /db_xref="CDD:440602" misc_feature complement(3300755..3300949) /locus_tag="STM3138" /note="Chemoreceptor zinc-binding domain; Region: CZB; pfam13682" /db_xref="CDD:433401" regulatory complement(3301686..3301691) /regulatory_class="ribosome_binding_site" /locus_tag="STM3138" /note="putative RBS for STM3138; RegulonDB:STMS1H003175" gene complement(3302354..3304221) /gene="gsp" /locus_tag="STM3139" /db_xref="GeneID:1254662" CDS complement(3302354..3304210) /gene="gsp" /locus_tag="STM3139" /note="bifunctional; similar to E. coli glutathionylspermidine synthetase/amidase (AAC76024.1); Blastp hit to AAC76024.1 (619 aa), 90% identity in aa 1 - 618" /codon_start=1 /transl_table=11 /product="glutathionylspermidine amidase" /protein_id="NP_462054.1" /db_xref="GeneID:1254662" /translation="MSKGTTSQDAPFGTLLGYAPGGVAIYSSDYNSLDPWDDDDAAFR SYIDDEYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQA FPNGSPRAPEAGALLIWQKGGEFNETGHVAIITQLLDNKIRIAEQNVIHTPLPPGQQW TRELEMVVENGCYTLRDTFDDTTILGWMIQTDDTQYSLSQPDIANQSLAIRGARLPEK GQFDGQWLDERDPLQKAYVQANGHVINQDPYQYFTITESAEQELIKATNELHLMYLHA TDKVLKDDNLLALFDIPKILWPRLRLSWQRRRHHMITGRMDFCMDERGLKVYEYNADS ASCHTEAGLILEKWAEQGYTGKGHNPAEGLINELAGAWKHSKARPFVHIMQDDDIEED YHAQFMQQALHQAGFASKILRGLGELRWDDAGQLIDGDGRLVNCVWKTWAWETAMEQI REVSETEYAAVPIRTGHPENEVRLIDVLLRPEVLVFEPLWTVIPGNKAILPILWSLFP HHRYLLDTDFTVNDELVQTGYAVKPIAGRCGSNIDLVSHQEELLDKTSGKFATQKNIY QQLWCLPKVAGKYIQVCTFTVGGNYGGTCLRGDDSLVIKKESDIEPLIVIKA" misc_feature complement(3302360..3304210) /gene="gsp" /locus_tag="STM3139" /note="bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase; Provisional; Region: PRK10507" /db_xref="CDD:182504" regulatory complement(3304216..3304221) /regulatory_class="ribosome_binding_site" /gene="gsp" /locus_tag="STM3139" /note="putative RBS for gsp; RegulonDB:STMS1H003176" gene 3304428..3305303 /gene="yghU" /locus_tag="STM3140" /db_xref="GeneID:1254663" regulatory 3304428..3304433 /regulatory_class="ribosome_binding_site" /gene="yghU" /locus_tag="STM3140" /note="putative RBS for yghU; RegulonDB:STMS1H003177" CDS 3304437..3305303 /gene="yghU" /locus_tag="STM3140" /note="similar to E. coli orf, hypothetical protein (AAC76025.1); Blastp hit to AAC76025.1 (304 aa), 91% identity in aa 17 - 303" /codon_start=1 /transl_table=11 /product="putative glutathione S-transferase" /protein_id="NP_462055.1" /db_xref="GeneID:1254663" /translation="MADNTYQPAKVWTWDKSGGGAFANINRPVSGPTHDKTLPVGKHP LQLYSLGTPNGQKVTIMLEELLALGVTGAEYDAWLIRIGEGDQFSSGFVDINPNSKIP ALRDNSHNPPIRVFESGAILVYLADKFGHFLPQDLAKRTETLNWLFWLQGAAPFLGGG FGHFYHYAPVKIEYAINRFTMEAKRLLDVLDKQLAHHPYVAGEEYTIADMAIWPWFGN VVLGNVYDAAEFLDAGSYQNVQRWAKQVAERPAVKRGRIVNRTNGPLNEQLHERHDAS DFENHTEDKRQS" misc_feature 3304437..3305228 /gene="yghU" /locus_tag="STM3140" /note="putative S-transferase; Provisional; Region: PRK11752" /db_xref="CDD:183298" gene complement(3305371..3306087) /locus_tag="STM3141" /db_xref="GeneID:1254664" CDS complement(3305371..3306081) /locus_tag="STM3141" /codon_start=1 /transl_table=11 /product="molybdenum-binding periplasmic protein" /protein_id="NP_462056.1" /db_xref="GeneID:1254664" /translation="MRILAAGSLRVVWPQLMAAFQADAVCDFGPAGLLRERIEAGEAC DFFASANLAHPQALLESGRALRVAPFTTNRLCLSVRAQAMREGEDWLSLLTRRDLRIG TSTAGCDPSGDYTQQLFSRMGKEGEAVRKRAVALVGGRQTLPLPAGRLAAEWLINHDY TDIFIGYASYAPWLRQVNSLRVVDIPEPYNPVAEYGFACLSEQGKTLADFLLSARARL ILMQHGFSEAPNMTHSQN" misc_feature complement(3305407..3306078) /locus_tag="STM3141" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" gene complement(3306081..3307138) /locus_tag="STM3142" /db_xref="GeneID:1254665" CDS complement(3306081..3307133) /locus_tag="STM3142" /codon_start=1 /transl_table=11 /product="putative ferrichrome-binding periplasmic protein" /protein_id="NP_462057.1" /db_xref="GeneID:1254665" /translation="MNKFLRQLSLLALLFCWPLMSQAARTFTDQIGRQVTVPDTVDRV VVLQHQTLNLLVQMNATDKIVGVMANWKQQLGDGYARLAPELAQKASLGDLTHVDPEK LVALRPQVVFVTNYAPQEMIDKISRLGIPVVAISLRHDIAGEQAKMNPTLADEEQAYN RGLREGITLIGDIVNKPQEAKALIEAMDKGRKMVSDRLQSVPENERVRAYMANPELTT YGSGKYTGLMMAHAGALNVAASSVKGFKQVTMEQVIAWDPQVIFVQNRYPKVVNEILH NPQWQVIDAVKHHRVYLMPDYAKAWGYPMPEAVGIGELWMAKKLYPEKFHDIDMQKAA NDWYQRFYRTDYQGVQ" misc_feature complement(3306144..3307073) /locus_tag="STM3142" /note="Periplasmic binding protein TroA_e. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a...; Region: TroA_e; cd01142" /db_xref="CDD:238562" misc_feature complement(order(3306399..3306401,3306495..3306497, 3306786..3306788,3306792..3306794,3306849..3306851, 3306969..3306971,3307038..3307043)) /locus_tag="STM3142" /note="putative ligand binding residues [chemical binding]; other site" /db_xref="CDD:238562" regulatory complement(3306082..3306087) /regulatory_class="ribosome_binding_site" /locus_tag="STM3141" /note="putative RBS for STM3141; RegulonDB:STMS1H003178" regulatory complement(3307133..3307138) /regulatory_class="ribosome_binding_site" /locus_tag="STM3142" /note="putative RBS for STM3142; RegulonDB:STMS1H003179" gene complement(3307209..3307470) /gene="hybG" /locus_tag="STM3143" /db_xref="GeneID:1254666" CDS complement(3307209..3307457) /gene="hybG" /locus_tag="STM3143" /note="similar to E. coli hydrogenase-2 operon protein: may effect maturation of large subunit of hydrogenase-2 (AAC76026.1); Blastp hit to AAC76026.1 (82 aa), 93% identity in aa 1 - 82" /codon_start=1 /transl_table=11 /product="hydrogenase-2 operon protein" /protein_id="NP_462058.1" /db_xref="GeneID:1254666" /translation="MCIGVPGQVLAVGDDIHQLAQVEVCGIKRDVNIALICEGKPADL IGQWVLVHVGFAMSIIDEDEAKATLDALRRMEYDITSA" misc_feature complement(3307212..3307457) /gene="hybG" /locus_tag="STM3143" /note="hydrogenase maturation factor HybG; Region: PRK10413" /db_xref="CDD:182438" regulatory complement(3307465..3307470) /regulatory_class="ribosome_binding_site" /gene="hybG" /locus_tag="STM3143" /note="putative RBS for hybG; RegulonDB:STMS1H003180" gene complement(3307485..3307840) /gene="hybF" /locus_tag="STM3144" /db_xref="GeneID:1254667" CDS complement(3307485..3307826) /gene="hybF" /locus_tag="STM3144" /note="similar to E. coli may modulate levels of hydrogenease-2 (AAC76027.1); Blastp hit to AAC76027.1 (113 aa), 84% identity in aa 1 - 113" /codon_start=1 /transl_table=11 /product="putative hydrogenase expression/formation protein" /protein_id="NP_462059.1" /db_xref="GeneID:1254667" /translation="MHELSLCQSAVEIIQQQAEQHGVARVTGVWLEIGALSCVEERAV RFSFDIACQGTLAQGCELHIDYRPAQAWCWDCSQVVEILRHDAQCPHCHGDRLRVDTG DSLKVKSIEVE" misc_feature complement(3307488..3307826) /gene="hybF" /locus_tag="STM3144" /note="hydrogenase/urease nickel incorporation protein; Region: PRK12380" /db_xref="CDD:183485" gene complement(3307819..3308320) /gene="hybE" /locus_tag="STM3145" /db_xref="GeneID:1254668" CDS complement(3307819..3308307) /gene="hybE" /locus_tag="STM3145" /note="similar to E. coli member of hyb operon (AAC76028.1); Blastp hit to AAC76028.1 (162 aa), 80% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="putative hydrogenase" /protein_id="NP_462060.1" /db_xref="GeneID:1254668" /translation="MSETFSGFDTAPVARVQAAFEEIAHRSMHDLSFLHPTMPVHVSD FTLFEGQWTGTVITPWMLSALIFPGPDQIWPRRTVGEKLGLQLPYGTMTFTVGELEGV SQYLACSLMSPLSRSLSPEEGVRLADDCARMLLSLPVSNPDAPQTSRRALLFGRRSCE NA" misc_feature complement(3307831..3308307) /gene="hybE" /locus_tag="STM3145" /note="hydrogenase-2 assembly chaperone; Region: PRK10465" /db_xref="CDD:182480" regulatory complement(3307835..3307840) /regulatory_class="ribosome_binding_site" /gene="hybF" /locus_tag="STM3144" /note="putative RBS for hybF; RegulonDB:STMS1H003181" gene complement(3308300..3308805) /gene="hybD" /locus_tag="STM3146" /db_xref="GeneID:1254669" CDS complement(3308300..3308794) /gene="hybD" /locus_tag="STM3146" /note="similar to E. coli probable processing element for hydrogenase-2 (AAC76029.1); Blastp hit to AAC76029.1 (164 aa), 94% identity in aa 1 - 163" /codon_start=1 /transl_table=11 /product="putative processing element for hydrogenase-2" /protein_id="NP_462061.1" /db_xref="GeneID:1254669" /translation="MRILVLGVGNILLTDEAIGVRIVEALEQRYTLPDFVEILDGGTA GMELLGDMANRDHLIIADAIVSKKNAPGTIMVLRDDEVPALFTNKISPHQLGLADVLS ALRFTGEFPKKLTLVGVIPQSLEPHIGLTPTVEAMIEPALEQVLAALRESGVEAIPKE TAHV" misc_feature complement(3308303..3308794) /gene="hybD" /locus_tag="STM3146" /note="HyaD/HybD family hydrogenase maturation endopeptidase; Region: hybD; PRK10466" /db_xref="CDD:182481" misc_feature complement(order(3308669..3308677,3308723..3308725, 3308765..3308767)) /gene="hybD" /locus_tag="STM3146" /note="putative substrate-binding site [active]" /db_xref="CDD:99873" misc_feature complement(order(3308516..3308518,3308609..3308611, 3308747..3308749)) /gene="hybD" /locus_tag="STM3146" /note="nickel binding site [ion binding]; other site" /db_xref="CDD:99873" regulatory complement(3308315..3308320) /regulatory_class="ribosome_binding_site" /gene="hybE" /locus_tag="STM3145" /note="putative RBS for hybE; RegulonDB:STMS1H003182" gene complement(3308794..3310511) /gene="hybC" /locus_tag="STM3147" /db_xref="GeneID:1254670" CDS complement(3308794..3310497) /gene="hybC" /locus_tag="STM3147" /EC_number="1.12.7.2" /note="similar to E. coli probable large subunit, hydrogenase-2 (AAC76030.1); Blastp hit to AAC76030.1 (567 aa), 94% identity in aa 1 - 567" /codon_start=1 /transl_table=11 /product="hydrogenase-2, large subunit" /protein_id="NP_462062.1" /db_xref="GeneID:1254670" /translation="MSQRITIDPVTRIEGHLRIDCEIENGVVSKAWASGTMWRGMEEI VKNRDPRDAWMIVQRICGVCTTTHAISSVRAAESALNIDVPVNAQYIRNIILAAHTTH DHIVHFYQLSALDWVDITSALKADPEKASAMLDGVSSWHLNSAQEFTKVQNKIKDLVA SGQLGIFANGYWGHPAMQLPPEVNLIAVAHYLQALECQRDANRVVALLGGKSPHIQNL AVGGVANPINLDSIGTLNLERLMYIKSFIDKLSDFVEQVYKVDTAVIAAYYPEWLERG KGAVNYLSAPEFPTDGKNGSFLFPGGYITNADLSTYRPITSHSDEFLIKGIQESAKHA WYKDEAPQAPWEGTTIPAYDGWSDDGKYSWVKSPTFYGKTVEVGPLANMLCKLAAGRE STQTKLNEIIALYQKLTGKTLEMAQLHSTLGRIIGRTVHCCELQNILQDQYNALIVNI GKGDYTTFVKPNIPATGEFKGVGFLEAPRGMLSHWMVIKDGIISNYQAVVPSTWNSGP RNFNDDVGPYEQSLVGTPIADPAKPLEVVRTIHSFDPCMACAVHVVDADGNEVVSVKV L" misc_feature complement(3308797..3310497) /gene="hybC" /locus_tag="STM3147" /note="hydrogenase 2 large subunit; Provisional; Region: PRK10467" /db_xref="CDD:182482" regulatory complement(3308800..3308805) /regulatory_class="ribosome_binding_site" /gene="hybD" /locus_tag="STM3146" /note="putative RBS for hybD; RegulonDB:STMS1H003183" gene complement(3310494..3311684) /gene="hybB" /locus_tag="STM3148" /db_xref="GeneID:1254671" CDS complement(3310494..3311672) /gene="hybB" /locus_tag="STM3148" /note="similar to E. coli probable cytochrome Ni/Fe component of hydrogenase-2 (AAC76031.1); Blastp hit to AAC76031.1 (392 aa), 96% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="putative cytochrome Ni/Fe component of hydrogenase-2" /protein_id="NP_462063.1" /db_xref="GeneID:1254671" /translation="MSHDPKPLGGKIISKPVIIFGPLIVLCMLLIVKRLVFGLGSVSD LNGGFPWGVWIAFDLLIGTGFACGGWALAWAVYVFNRGQYHPLVRPALLASLFGYSLG GLSITIDVGRYWNLPYFYIPGHFNVNSVLFETAVCMTIYIGVMALEFAPALFERLGWK VSLKRLNKVMFFIIALGALLPTMHQSSMGSLMISAGYKVHPLWQSYEMLPLFSVLTAF IMGFSIVIFEGSLVQAGLKGNGPDEKNLFVKLTNTISVLLAIFVVLRFGELIYRDKLS YAFAGDFYSAMFWIEVVLMVFPLVVLRVAKLRNDSRMLYLSALSALLGCATWRLTYSL VAFNPGGGYHYFPTWEELLISIGFVAIEICAYIVLIRLLPILPPLKQNDHNRHEASKA " misc_feature complement(3310497..3311672) /gene="hybB" /locus_tag="STM3148" /note="Ni/Fe-hydrogenase cytochrome b subunit; Region: PRK10881" /db_xref="CDD:236785" regulatory complement(3310506..3310511) /regulatory_class="ribosome_binding_site" /gene="hybB" /locus_tag="STM3148" /note="putative RBS for hybC; RegulonDB:STMS1H003184" gene complement(3311662..3312663) /gene="hybA" /locus_tag="STM3149" /db_xref="GeneID:1254672" CDS complement(3311662..3312648) /gene="hybA" /locus_tag="STM3149" /note="intitally thought to be hydrogenase-2 small subunit which now identified as hybO; similar to E. coli hydrogenase-2 small subunit (AAC76032.1); Blastp hit to AAC76032.1 (328 aa), 95% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462064.1" /db_xref="GeneID:1254672" /translation="MNRRDFIKAASGGALLLGAAPSVSHAAAENRPPIPGSLGMLYDS TLCVGCQACVTKCQDINFPARNPEGEQTWSNNDKLSPYTNNIIQVWRSGTGVNKDQEE NGYAYIKKQCMHCVDPNCVSVCPVSALKKDPKTGIVHYDKDVCTGCRYCMVACPYNVP KYDYNNPFGALHKCELCNQKGVERLDKGGLPGCVEVCPAGAVIFGTREELMAEAKKRL ALKPGSEYHYPRQTLKTDDTYLHTVPKYYPHLYGEKEGGGTQVLVLTGVPYEDLDLPK LDDLSTGARSEHVQHTLYKGMILPLAALAGLTVLVRRNSKNDHHDGGDDHES" misc_feature complement(3311665..3312648) /gene="hybA" /locus_tag="STM3149" /note="hydrogenase 2 operon protein HybA; Region: PRK10882" /db_xref="CDD:236786" regulatory complement(3311679..3311684) /regulatory_class="ribosome_binding_site" /gene="hybA" /locus_tag="STM3149" /note="putative RBS for hybB; RegulonDB:STMS1H003185" gene complement(3312651..3313785) /gene="hypO" /locus_tag="STM3150" /db_xref="GeneID:1254673" CDS complement(3312651..3313769) /gene="hypO" /locus_tag="STM3150" /EC_number="1.12.7.2" /note="similar to E. coli putative hydrogenase subunit (AAC76033.1); Blastp hit to AAC76033.1 (372 aa), 96% identity in aa 1 - 372" /codon_start=1 /transl_table=11 /product="putative Ni/Fe hydrogenases, small subunit" /protein_id="NP_462065.1" /db_xref="GeneID:1254673" /translation="MTGDNTLITSHGINRRDFMKLCAALAATMGLSSKAAAEMAESVS NPQRPPVIWIGAQECTGCTESLLRATHPTVENLVLETISLEYHEVLSAAFGHQVEENK HNALEKYKGQYVLVVDGSIPLKDNGIYCMVAGEPIVDHIRKAADGAAAIIAIGSCSAW GGVAAAGVNPTGAVSLQEVLPGKTVINIPGCPPNPHNFLATVAHIITYGTPPKLDAKN RPTFAYGRLIHEHCERRPHFDAGRFAKEFGDEGHRQGWCLYHLGCKGPETWGNCSTLQ FCDVGGVWPVAIGHPCYGCNEEGIGFHKGIHQLAHVENQTPRSEKPDVNMKEGGNISA GAVGLLGGVVGLVAGVSVMAVRELGRQQKKDNADSRGE" misc_feature complement(3312657..3313769) /gene="hypO" /locus_tag="STM3150" /note="hydrogenase 2 small subunit; Provisional; Region: PRK10468" /db_xref="CDD:182483" regulatory complement(3312658..3312663) /regulatory_class="ribosome_binding_site" /gene="hybA" /locus_tag="STM3149" /note="putative RBS for hybA; RegulonDB:STMS1H003186" regulatory complement(3313780..3313785) /regulatory_class="ribosome_binding_site" /gene="hypO" /locus_tag="STM3150" /note="putative RBS for hypO; RegulonDB:STMS1H003187" gene complement(3313959..3314257) /gene="yghW" /locus_tag="STM3151" /db_xref="GeneID:1254674" CDS complement(3313959..3314246) /gene="yghW" /locus_tag="STM3151" /note="similar to E. coli orf, hypothetical protein (AAC76034.1); Blastp hit to AAC76034.1 (95 aa), 78% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462066.1" /db_xref="GeneID:1254674" /translation="MNNHFGKGLMAGLHAPYAYSAHHAVNFCSEYKRGFVLGFTHRMF EKTGDRQLSAWEAGILTRRYGLDKEMVMDFFKENHSGMAVRFFMAGYRLEG" misc_feature complement(3313968..3314246) /gene="yghW" /locus_tag="STM3151" /note="Protein of unknown function (DUF2623); Region: DUF2623; pfam11115" /db_xref="CDD:431663" regulatory complement(3314252..3314257) /regulatory_class="ribosome_binding_site" /gene="yghW" /locus_tag="STM3151" /note="putative RBS for yghW; RegulonDB:STMS1H003188" gene complement(3314331..3315981) /locus_tag="STM3152" /db_xref="GeneID:1254675" CDS complement(3314331..3315974) /locus_tag="STM3152" /note="similar to E. coli methyl-accepting chemotaxis protein I, serine sensor receptor (AAC77311.1); Blastp hit to AAC77311.1 (551 aa), 43% identity in aa 1 - 551" /codon_start=1 /transl_table=11 /product="putative methyl-accepting chemotaxis protein" /protein_id="NP_462067.1" /db_xref="GeneID:1254675" /translation="MRLLQNFTIRMVMLTILGLFCLLWSGVGLYSVHALSEVSEGNDI DRHLVRQMTVLSQGNDQYFRFVTRLSRAMDVKIGGGTPDFAPARQSLENMRQKLEEMK ALSPGPMNPDISREVLSNWQALLEKGVVPQMQLAQQGSLTAWSEHASTVTPALSRAFG ASAERFSHEAGAMLDNTRVMVDGKTYTIRILLITAVILGIAILIFTDRYLVAMMVKPL ERIRQQFQRIAQGDLSQPIEALGRNCVGRLVPLLRAMQDSLREAVSTIRAGSDNIWRG ATEISTGNNDLSSRTEEQAAALEETAASMEQLTATVKMNAEHARQASQLADAASLTAG KGGELVSDVVETMNGISASSQQIAEITTVINSIAFQTNILALNAAVEAARAGEQGRGF AVVAGEVRNLASRSAGAAKEIEALIGESVRRVAQGAQLVQETGATMDAILRGVTEVTT IMKQIASASEEQSKGISQVGVAITQMDSVTQQNAALVEQVSAAAAALERQTEDLQRSV QQFRLSASEPQQRVTAKAAPGVQRMASAPAQSTDEWVSF" misc_feature complement(3314334..>3315422) /locus_tag="STM3152" /note="Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cl46910" /db_xref="CDD:481250" misc_feature complement(order(3314505..3314510,3314517..3314519, 3314526..3314531,3314538..3314540,3314547..3314552, 3314556..3314561,3314568..3314573,3314577..3314582, 3314589..3314591,3314598..3314603,3314610..3314612, 3314619..3314624,3314631..3314636,3314640..3314645, 3314652..3314654,3314661..3314666,3314673..3314675, 3314682..3314687,3314724..3314729,3314736..3314741, 3314745..3314750,3314757..3314762,3314769..3314771, 3314778..3314783,3314790..3314792,3314799..3314801, 3314811..3314813,3314832..3314834,3314841..3314843, 3314853..3314855,3314862..3314867,3314874..3314876, 3314883..3314885,3314892..3314897,3314904..3314909, 3314916..3314918,3314925..3314930,3314934..3314936, 3314946..3314951,3314955..3314960,3314967..3314969, 3314976..3314981,3314988..3314993,3315000..3315002, 3315009..3315014,3315021..3315023,3315030..3315035, 3315039..3315044,3315051..3315053,3315060..3315065, 3315072..3315077)) /locus_tag="STM3152" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature complement(3314766..3314867) /locus_tag="STM3152" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" regulatory complement(3315976..3315981) /regulatory_class="ribosome_binding_site" /locus_tag="STM3152" /note="putative RBS for STM3152; RegulonDB:STMS1H003189" gene complement(3316281..3316784) /gene="yqhA" /locus_tag="STM3153" /db_xref="GeneID:1254676" CDS complement(3316281..3316775) /gene="yqhA" /locus_tag="STM3153" /note="similar to E. coli orf, hypothetical protein (AAC76038.1); Blastp hit to AAC76038.1 (164 aa), 94% identity in aa 1 - 164" /codon_start=1 /transl_table=11 /product="putative membrane-associated protein" /protein_id="NP_462068.1" /db_xref="GeneID:1254676" /translation="MERFLENVMYASRWLLAPVYFGLSLALIALALKFFQEILHVLPN VFALAEADLILVLLSLVDMTLVGGLLVMVMFSGYENFVSQLDISAGKEKLNWLGKMDA TSLKNKVAASIVAISSIHLLRVFMDAKNVPDNKLMWYVIIHLTFVLSAFVMGYLDRLT RHNH" misc_feature complement(3316284..3316775) /gene="yqhA" /locus_tag="STM3153" /note="Uncharacterized membrane protein YqhA [Function unknown]; Region: YqhA; COG2862" /db_xref="CDD:442109" regulatory complement(3316779..3316784) /regulatory_class="ribosome_binding_site" /gene="yqhA" /locus_tag="STM3153" /note="putative RBS for yqhA; RegulonDB:STMS1H003190" gene complement(3317055..3317570) /locus_tag="STM3154" /db_xref="GeneID:1254677" CDS complement(3317055..3317570) /locus_tag="STM3154" /codon_start=1 /transl_table=11 /product="putative ATP-dependent RNA helicase-like protein" /protein_id="NP_462069.1" /db_xref="GeneID:1254677" /translation="MEPAMNSIFYSVIILLLLTGAILFLMWEVNKKRPGGKIVNLNQT EPMTKEEGEDHFSVLMNSITPVWYWRVNHEYIDFLHATIKRMTMTELNETPGLFDAQR RCSDLNSAVYKYYDNIKKRCLNGEKVPYSDLDVLNLRQCFREFSLEAYPALVALVWPE YQRPQVNPDEI" gene 3317656..3318072 /locus_tag="STM3155" /db_xref="GeneID:1254678" regulatory 3317656..3317661 /regulatory_class="ribosome_binding_site" /locus_tag="STM3155" /note="putative RBS for STM3155; RegulonDB:STMS1H003191" CDS 3317662..3318072 /locus_tag="STM3155" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462070.1" /db_xref="GeneID:1254678" /translation="MLPEHLVSSHFRLSSPPPEATENSKNLPKGKTKLSDYEPDILIS ANAAGQHRNVLFEERDRHIKERLYCVAKIETFARLINALQAEGDIDAQTLSKILADKT AMINEKGNAIWLNLITRETDMPLFYSLEDKDERS" gene 3318053..3318463 /locus_tag="STM3156" /db_xref="GeneID:1254679" regulatory 3318053..3318058 /regulatory_class="ribosome_binding_site" /locus_tag="STM3156" /note="putative RBS for STM3156; RegulonDB:STMS1H003192" CDS 3318059..3318463 /locus_tag="STM3156" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462071.1" /db_xref="GeneID:1254679" /translation="MKEVEDNNVYLALDNHKSDEFILKQNLAALIASKNATLEKVTQE VVSIPAALVRLKWQNRREMYALQVKEEIYGATINAIIEQHPELRDKIMSRLESDWQHL LARETATLRLTRKLSDGDYRTRNVTTVARQEK" gene 3318573..3319471 /gene="yghA" /locus_tag="STM3157" /db_xref="GeneID:1254680" regulatory 3318573..3318578 /regulatory_class="ribosome_binding_site" /gene="yghA" /locus_tag="STM3157" /note="putative RBS for yghA; RegulonDB:STMS1H003193" CDS 3318587..3319471 /gene="yghA" /locus_tag="STM3157" /note="similar to E. coli putative oxidoreductase (AAC76039.1); Blastp hit to AAC76039.1 (294 aa), 93% identity in aa 1 - 294" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_462072.1" /db_xref="GeneID:1254680" /translation="MSHLYDPTTQYYTGEYPKQKQPAPGVQAKMTPVPDCGEKSYVGS GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECGRKA VLLPGDLSDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVN VFALFWITQEAIPLLPKGASIITTSSIQAYQPSPHLLDYAATKAAILNYSRGLAKQVA EKGIRVNIVAPGPIWTALQISGGQTQDKIPQFGQQTPMKRAGQPAELAPVYVYLASQE SSYVTAEVHGVCGGEHLG" misc_feature 3318587..3319468 /gene="yghA" /locus_tag="STM3157" /note="SDR family oxidoreductase; Region: PRK07985" /db_xref="CDD:181188" gene complement(3319584..3320023) /gene="exbD" /locus_tag="STM3158" /db_xref="GeneID:1254681" CDS complement(3319584..3320009) /gene="exbD" /locus_tag="STM3158" /note="tonB-dependent uptake of B colicins; similar to E. coli uptake of enterochelin; tonB-dependent uptake of B colicins (AAC76041.1); Blastp hit to AAC76041.1 (141 aa), 93% identity in aa 1 - 141" /codon_start=1 /transl_table=11 /product="uptake of enterochelin" /protein_id="NP_462073.1" /db_xref="GeneID:1254681" /translation="MAMRLNENLDDNGEMHEINVTPFIDVMLVLLIIFMVAAPLATVD VKVNLPASTSTPQPRPEKPVYLSVKADNTMFIGNDPVTDDTMIAELTALTEGKKDTTI FFRADKTVEYETLMKVMDMLHQAGYLKIGLVGEETAKAK" misc_feature complement(3319587..3320009) /gene="exbD" /locus_tag="STM3158" /note="biopolymer transport protein ExbD; Provisional; Region: PRK11267" /db_xref="CDD:183064" gene complement(3320016..3320763) /gene="exbB" /locus_tag="STM3159" /db_xref="GeneID:1254682" CDS complement(3320016..3320750) /gene="exbB" /locus_tag="STM3159" /note="tonB-dependent uptake of B colicins; biopolymer transport EXBB protein. (SW:EXBB_SALTY)" /codon_start=1 /transl_table=11 /product="uptake of enterochelin" /protein_id="NP_462074.1" /db_xref="GeneID:1254682" /translation="MGNNLMQTDLSVWGMYQHADIVVKCVMIGLILASVVTWAIFFSK SVEFFTQKRRLKREQLQLADARSLDQASDIAAGFSAKSLSAQLINEAQNELELSQGSE DNEGIKERTGFRLERRVAAVGRYMGRGNGYLATIGAISPFVGLFGTVWGIMNSFIGIA QTQTTNLAVVAPGIAEALLATAIGLVAAIPAVVIYNIFARQIGSYKATLGDVAAQVLL LQSRDLDLNASASAQPVRAAQKLRVG" misc_feature complement(3320019..3320750) /gene="exbB" /locus_tag="STM3159" /note="biopolymer transporter ExbB; Region: PRK10414" /db_xref="CDD:236685" regulatory complement(3320018..3320023) /regulatory_class="ribosome_binding_site" /gene="exbD" /locus_tag="STM3158" /note="putative RBS for exbD; RegulonDB:STMS1H003194" gene complement(3320743..3320892) /locus_tag="STM3160" /db_xref="GeneID:1254683" CDS complement(3320743..3320892) /locus_tag="STM3160" /note="similar to E. coli orf, hypothetical protein (AAC76043.1); Blastp hit to AAC76043.1 (51 aa), 83% identity in aa 3 - 51" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462075.1" /db_xref="GeneID:1254683" /translation="MAFLMRKRKEKAVKVRQYVNSNENDYQFDVVLILLCSDFVICVL EIQSG" regulatory complement(3320758..3320763) /regulatory_class="ribosome_binding_site" /locus_tag="STM3160" /note="putative RBS for exbB; RegulonDB:STMS1H003195" gene 3320989..3322189 /gene="metC" /locus_tag="STM3161" /db_xref="GeneID:1254684" regulatory 3320989..3320994 /regulatory_class="ribosome_binding_site" /gene="metC" /locus_tag="STM3161" /note="putative RBS for metC; RegulonDB:STMS1H003196" CDS 3321002..3322189 /gene="metC" /locus_tag="STM3161" /EC_number="4.4.1.8" /note="beta-cystathionase; cystathionine beta-lyase. (SW:METC_SALTY)" /codon_start=1 /transl_table=11 /product="cystathionine beta-lyase" /protein_id="NP_462076.1" /db_xref="GeneID:1254684" /translation="MTDKQLDTKLVNAGRSKKYTLGSVNSVIQRASSLVFDTVEAKKH ATRNLANGELFYGRRGTLTHFSLQEAMCELEGGAGCALFPCGAAAVANTILAFVEQGD HILMTNTAYEPSQDFCSKILGKLGVTTSWFDPLIGADITQHIQPNTKVVFLESPGSIT MEVHDIPSIVSAVRRVAPEAVIMIDNTWAAGVLFKALEFDIDISIQAGTKYLIGHSDA MVGTAVANARCWEQLRENAYLMGQMLDADTAYMTSRGLRTLGVRLRQHQESSLKIAAW LANHPQVARVNHPALPGSKGHAFWKRDFTGSSGLFSFVLNKKLTEAELSAYLDNFSLF SMAYSWGGYESLIIANQPEQIAAIRPAGGVDFTGTLVRVHIGLESVDDLIADLAAGFA RIV" misc_feature 3321002..3322186 /gene="metC" /locus_tag="STM3161" /note="cystathionine beta-lyase; Provisional; Region: PRK08114" /db_xref="CDD:181231" misc_feature order(3321089..3321100,3321104..3321109,3321167..3321169, 3321173..3321175,3321251..3321256,3321260..3321265, 3321332..3321334,3321347..3321349,3321356..3321358, 3321626..3321628,3321650..3321652,3321656..3321658, 3321704..3321706,3321734..3321736,3321740..3321745, 3321986..3321988) /gene="metC" /locus_tag="STM3161" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99738" misc_feature order(3321254..3321262,3321332..3321334,3321461..3321463, 3321554..3321556,3321620..3321622,3321626..3321631, 3321656..3321658) /gene="metC" /locus_tag="STM3161" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:99738" misc_feature order(3321254..3321262,3321332..3321334,3321554..3321556, 3321563..3321565,3321620..3321622,3321626..3321631) /gene="metC" /locus_tag="STM3161" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99738" misc_feature 3321629..3321631 /gene="metC" /locus_tag="STM3161" /note="catalytic residue [active]" /db_xref="CDD:99738" gene 3322318..3322988 /gene="yghB" /locus_tag="STM3162" /db_xref="GeneID:1254685" regulatory 3322318..3322323 /regulatory_class="ribosome_binding_site" /gene="yghB" /locus_tag="STM3162" /note="putative RBS for yghB; RegulonDB:STMS1H003197" CDS 3322329..3322988 /gene="yghB" /locus_tag="STM3162" /note="hypothetical protein in metC 3'region. (SW:YGHB_SALTY)" /codon_start=1 /transl_table=11 /product="putative DedA family membrane protein" /protein_id="NP_462077.1" /db_xref="GeneID:1254685" /translation="MAVIQDIIAALWQHDFAALANPHVVSVVYFVMFATLFLENGLLP ASFLPGDSLLLLAGALIAQDVMHFLPTIGILTAAASLGCWLSYIQGRWLGNTRTVKGW LAQLPAKYHQRATCMFDRHGLLALLAGRFLAFVRTLLPTMAGISGLSNRRFQFFNWLS GLLWVTVVTSFGYALSMIPFVKRHEDQVMTFLMILPVALLVAGLLGTLVVVIKKKYCN A" misc_feature 3322398..3322973 /gene="yghB" /locus_tag="STM3162" /note="Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family [Cell wall/membrane/envelope biogenesis]; Region: DedA; COG0586" /db_xref="CDD:440351" gene complement(3323052..3323983) /gene="yqhC" /locus_tag="STM3163" /db_xref="GeneID:1254686" CDS complement(3323052..3323969) /gene="yqhC" /locus_tag="STM3163" /note="similar to E. coli putative ARAC-type regulatory protein (AAC76046.1); Blastp hit to AAC76046.1 (375 aa), 83% identity in aa 72 - 375" /codon_start=1 /transl_table=11 /product="putative AraC/XylS family transcriptional regulator" /protein_id="NP_462078.1" /db_xref="GeneID:1254686" /translation="MKKWRVMNREAICLQLADKINHLKNNDKIISERLAGIRLLYGVE PGPRTPVMYQPGIIFLFSGHKIGYINKRKFRYDANEYLLLTVPLPFECETWATPEVPL AGIRLDIDVLQLQELLMDIGEDERFQLPMAASGINSATLSDEILCAVERLLDVMERPL DARILGKQIIREILYHVLMGPRGGALLALVSRQTHFSLISRVLKQIEMKYTENLNVEQ LAAEANMSVSAFHHNFKAVTSTSPLQYLKSYRLHKARMMMIHDGMKASAAAMRVGYES ASQFSREFKRYFGVTPGEDVARMRTMQGS" misc_feature complement(3323415..3323873) /gene="yqhC" /locus_tag="STM3163" /note="AraC-type transcriptional regulator N-terminus; Region: AraC_N; pfam06719" /db_xref="CDD:461994" misc_feature complement(3323088..3323333) /gene="yqhC" /locus_tag="STM3163" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:197666" regulatory complement(3323978..3323983) /regulatory_class="ribosome_binding_site" /gene="yqhC" /locus_tag="STM3163" /note="putative RBS for yqhC; RegulonDB:STMS1H003198" gene 3324131..3325307 /gene="yqhD" /locus_tag="STM3164" /db_xref="GeneID:1254687" regulatory 3324131..3324136 /regulatory_class="ribosome_binding_site" /gene="yqhD" /locus_tag="STM3164" /note="putative RBS for yqhD; RegulonDB:STMS1H003199" CDS 3324144..3325307 /gene="yqhD" /locus_tag="STM3164" /note="similar to E. coli putative oxidoreductase (AAC76047.1); Blastp hit to AAC76047.1 (387 aa), 88% identity in aa 1 - 387" /codon_start=1 /transl_table=11 /product="putative alcohol dehydrogenase" /protein_id="NP_462079.1" /db_xref="GeneID:1254687" /translation="MNNFKLHTPTRILFGKGAIVDLRDQIPQDARVLITYGGGSVKKT GVLAQVQEALKGLDVREFGGIEPNPSYETLMKAVQLVRDENITFLLAVGGGSVLDGTK FIAAAAQYTDGVDPWHILETGGTEIRSAIPMGSVLTLPATGSESNAGAVISRKTTGDK QAFHSSFVQPVFAVLDPVYTYTLPPRQVANGVVDAFVHTVEQYVTYPVNGKIQDRFAE GILLTLIEEGPKALQEPENYDVRANVMWAATQALNGLIGAGVPQDWATHMLGHELTAM HGLDHAQTLAIVLPALWNEKRDVKRAKLLQYAERVWNITDGSDDERIDAAIAATRRFF EQMGVPTHLSDYGLDGSTIPALLAKLEAHGCINLGENQDITLDVSRRIYEAAR" misc_feature 3324144..3325304 /gene="yqhD" /locus_tag="STM3164" /note="alcohol dehydrogenase; Region: PRK15138" /db_xref="CDD:185092" misc_feature order(3324168..3324170,3324174..3324179,3324183..3324188, 3324807..3324809,3324819..3324821,3324867..3324872, 3324879..3324881) /gene="yqhD" /locus_tag="STM3164" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:341466" misc_feature order(3324255..3324263,3324342..3324347,3324423..3324431, 3324438..3324440,3324555..3324560,3324567..3324569, 3324573..3324575,3324582..3324584,3324588..3324590, 3324594..3324596,3324621..3324623,3324678..3324680, 3324687..3324692,3324723..3324725,3324735..3324737, 3324942..3324944,3324984..3324986) /gene="yqhD" /locus_tag="STM3164" /note="active site" /db_xref="CDD:341466" misc_feature order(3324723..3324725,3324735..3324737,3324942..3324944, 3324984..3324986) /gene="yqhD" /locus_tag="STM3164" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:341466" gene 3325401..3326240 /gene="yqhE" /locus_tag="STM3165" /db_xref="GeneID:1254688" regulatory 3325401..3325406 /regulatory_class="ribosome_binding_site" /gene="yqhE" /locus_tag="STM3165" /note="putative RBS for yqhE; RegulonDB:STMS1H003200" CDS 3325413..3326240 /gene="yqhE" /locus_tag="STM3165" /note="similar to E. coli orf, hypothetical protein (AAC76048.1); Blastp hit to AAC76048.1 (236 aa), 93% identity in aa 1 - 236" /codon_start=1 /transl_table=11 /product="2,5-diketo-D-gluconate reductase A" /protein_id="NP_462080.1" /db_xref="GeneID:1254688" /translation="MANPTIIRLQDGNVMPQLGLGVWKASNEEVIAAIHKALEVGYRS IDTATAYQNEEGVGKALKAASVAREELFITTKLWNDDQKRPREALQESLKKLQLDYLD LYLMHWPVPAIDHYVDAWKGMIALQKEGLVKSIGVCNFQIHHLQRLIDETGVTPVINQ IELHPLMQQRQLHAWNATHKIQTESWSPLAQGGEGVFDQKVIRELADKYGKTPAQIVI RWHLDCGLVVIPKSVTPSRIAENFAVWDFRLDKDELGEIAKLDQGKRLGPDPDQFGG" misc_feature 3325413..3326237 /gene="yqhE" /locus_tag="STM3165" /note="2,5-didehydrogluconate reductase DkgA; Region: dkgA; PRK11565" /db_xref="CDD:183203" misc_feature order(3325473..3325481,3325548..3325550,3325563..3325565, 3325638..3325640,3325731..3325733,3325824..3325829, 3325890..3325892,3325968..3325988,3326052..3326054, 3326097..3326108,3326121..3326123,3326130..3326135) /gene="yqhE" /locus_tag="STM3165" /note="active site" /db_xref="CDD:381296" misc_feature order(3325548..3325550,3325563..3325565,3325638..3325640, 3325731..3325733) /gene="yqhE" /locus_tag="STM3165" /note="catalytic tetrad [active]" /db_xref="CDD:381296" gene 3326406..3327890 /locus_tag="STM3166" /db_xref="GeneID:1254689" CDS 3326406..3327890 /locus_tag="STM3166" /note="similar to E. coli putative membrane pump protein (AAC73857.1); Blastp hit to AAC73857.1 (477 aa), 36% identity in aa 7 - 471" /codon_start=1 /transl_table=11 /product="putative cation transporter" /protein_id="NP_462081.3" /db_xref="GeneID:1254689" /translation="MHIKYLWMCDCGGKKSQGVKWLPFILILVIAAGLWQLTPPSGLS APAWHSAIIFVATIASIVAKVLPIGAVGIIGITVFALAYAAGDKTASGAITTALSELN SSLIWLIVVAFMIARGFIKTGLGRRIALQMIRLLGKRTLGLAYGLAFADLILSPAMPS NTARCGGVIYPIADSLARSFDSHPEDESRSKIGTFLITCIGNVNDVTAALFMTGYTGN LLAVKLAANAGVTLSWGSWFIAALLPCLVSFLIVPLLVYWLTRPEIKHTPDAPDLARK ELAQMGSMTRGEWLMLATVGVLLVLWIFGSSLGVDATTASFVGLSILLLSGVLTWEDV KSEKGAWDTLIWFAALLMMANQLKKLGFTSWFGNLIGDSIGSTMHGTSWIIILLLLNA AYFYTHYFFASGNAQIAALYAVFLGVGLHLNIPAAPMALMLAFTSSLYCSLTQYTHAR GPILFGAGYVPTGVWWRTGFIISLFNQAVFLTVGLAWWKVLGLY" misc_feature 3326460..3327884 /locus_tag="STM3166" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl21473" /db_xref="CDD:473875" misc_feature order(3326712..3326765,3326838..3326888,3326892..3326945, 3326985..3327056,3327135..3327179,3327276..3327314, 3327336..3327380,3327420..3327476,3327546..3327569, 3327600..3327623,3327693..3327752,3327825..3327863) /locus_tag="STM3166" /note="transmembrane helices; other site" /db_xref="CDD:238344" gene 3327929..3328390 /locus_tag="STM3167" /db_xref="GeneID:1254690" regulatory 3327929..3327934 /regulatory_class="ribosome_binding_site" /locus_tag="STM3167" /note="putative RBS for STM3167; RegulonDB:STMS1H003201" CDS 3327935..3328390 /locus_tag="STM3167" /codon_start=1 /transl_table=11 /product="putative diadenosine tetraphosphate (Ap4A) hydrolase" /protein_id="NP_462082.1" /db_xref="GeneID:1254690" /translation="MTCIFCQIVEGKAPCHKVWEDEHHLAFLSIFPNTDGFTVVIPKK HYPSYAFDLPPQALADLMLATQKVAKKLDKAFPDVSRTGMFFEGFGVDHVHSKLSPMH GTGDLTHWKPIESRQNKFFEQYEGYLSSHDHERADDEKLAALAARIREA" misc_feature 3327935..3328384 /locus_tag="STM3167" /note="Purine nucleoside phosphoramidase/Ap4A hydrolase, histidine triade (HIT) family [Nucleotide transport and metabolism, General function prediction only]; Region: HinT; COG0537" /db_xref="CDD:440303" gene complement(3328945..3331127) /gene="ygiR" /locus_tag="STM3168" /db_xref="GeneID:1254691" CDS complement(3328945..3331116) /gene="ygiR" /locus_tag="STM3168" /note="similar to E. coli orf, hypothetical protein (AAC76051.1); Blastp hit to AAC76051.1 (413 aa), 46% identity in aa 1 - 26" /codon_start=1 /transl_table=11 /product="putative Fe-S oxidoreductase family 2" /protein_id="NP_462083.1" /db_xref="GeneID:1254691" /translation="MSAISLIQPDRDLFSWPQYWAACFGPAPFLPMSRDEMDQLGWDS CDIILVTGDAYVDHPSFGMAICGRMLEAQGFRVGIIAQPDWNSKDDFMRLGKPNLFFG VTAGNMDSMINRYTADRKLRHDDAYTPDNVAGKRPDRATLVYTQRCKEAWKDVPVILG GIEASLRRTAHYDYWSDTVRRSVLVDSKADMLMFGNGERPLVEVAHRLAMGETIDQIR DVRNTAIMVKEALPGWSGVDSTRLDTPGKIDPIPHPYGEDLPCADNKPVAPKKQEAKA ITVQPPRPKPWEKTYILLPSFEKVKGDKVLYAHASRILHHETNPGCARALMQKHGDRY VWINPPAIPLSTEEMDSVFALPYQRVPHPAYGNARIPAYEMIRFSINIMRGCFGGCSF CSITEHEGRIIQSRSEDSIINEIEAIRDTVPGFTGVISDLGGPTANMYMLRCKSPRAE QTCRRLSCVYPDICPHMDTDHTPTINLYRRARELKGIKKILIASGVRYDIAVEDPRYI KELASHHVGGYLKIAPEHTEEGPLSKMMKPGMGSYDRFKELFDLYSKQAGKEQYLIPY FISAHPGTRDEDMVNLALWLKRHRFRLDQVQNFYPSPLANSTTMYYTGKNPLGKIGYK SEDVVVPKGDRQRRLHKALLRYHDPANWPLIRQALEAMGKKHLIGGRRECLVPAPTIE EMREARRQNRNTRPALTKHTPVEHQRQGLAANKKRGKGAGR" misc_feature complement(3329182..3331032) /gene="ygiR" /locus_tag="STM3168" /note="uncharacterized radical SAM protein YgiQ; Region: SAM_YgiQ; TIGR03904" /db_xref="CDD:274847" misc_feature complement(3328957..3329337) /gene="ygiR" /locus_tag="STM3168" /note="Domain of unknown function (DUF3362); Region: DUF3362; pfam11842" /db_xref="CDD:432120" regulatory complement(3331122..3331127) /regulatory_class="ribosome_binding_site" /gene="ygiR" /locus_tag="STM3168" /note="putative RBS for ygiR; RegulonDB:STMS1H003202" gene 3331597..3332587 /locus_tag="STM3169" /db_xref="GeneID:1254692" regulatory 3331597..3331602 /regulatory_class="ribosome_binding_site" /locus_tag="STM3169" /note="putative RBS for STM3169; RegulonDB:STMS1H003203" CDS 3331604..3332587 /locus_tag="STM3169" /note="similar to E. coli putative solute-binding transport protein (AAC76603.1); Blastp hit to AAC76603.1 (328 aa), 28% identity in aa 7 - 320" /codon_start=1 /transl_table=11 /product="putative dicarboxylate-binding periplasmic protein" /protein_id="NP_462084.1" /db_xref="GeneID:1254692" /translation="MKNTRSFTTSAVLLAGCLLLAFPALAKTTLKLSHNQDKSHAVHK AMSYLADKAKAYSDGELNIRIYPNATLGNERESLELMNSGALQMVKVNAASLESFAPE YSVFSLPFLFRDRDHYYNVLKSDLGKRILASSESKGFVGLTWYDGGARSFYAGKPITQ PDDLAGMKIRVQQSPSAIAMVKALGGVPTPMAQGELYTALQQGVVDGGENNPVVYADM RHAEVAKFYSRDEHTMVPDVLVISTKVLNKLSDKERKALYKAADESMQQMKDVIWPAA EKEAYESMKAMNATVVDIDKSAFKQRVKPLFDEFRAKDAQSAKDLEYIENM" misc_feature 3331688..3332578 /locus_tag="STM3169" /note="Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold; Region: PBP2_TRAP_SBP_like_3; cd13671" /db_xref="CDD:270389" misc_feature order(3332111..3332113,3332117..3332119,3332180..3332182, 3332231..3332236,3332243..3332245,3332306..3332308) /locus_tag="STM3169" /note="putative chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270389" gene 3332622..3333111 /locus_tag="STM3170" /db_xref="GeneID:1254693" regulatory 3332622..3332627 /regulatory_class="ribosome_binding_site" /locus_tag="STM3170" /note="putative RBS for STM3170; RegulonDB:STMS1H003204" CDS 3332629..3333111 /locus_tag="STM3170" /note="similar to E. coli orf, hypothetical protein (AAC76601.1); Blastp hit to AAC76601.1 (157 aa), 26% identity in aa 1 - 135" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462085.1" /db_xref="GeneID:1254693" /translation="MRILTNALNKILAGCCCIILAVMVACVSWQVAARFIFNAPSSTL DEFTQILFMWMILLGGVYTAGLKKHLAIDLLAQKLSRTPALMLDSIIQVIITVFALIF MVYGGDIIVEKAAHVSQMSPVLKWPMDKVYWVMPISGVILVYYTIVNVIDNYHQRHLR " misc_feature 3332629..3333087 /locus_tag="STM3170" /note="TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism]; Region: DctM; COG3090" /db_xref="CDD:442324" gene 3333116..3334429 /gene="ygiK" /locus_tag="STM3171" /db_xref="GeneID:1254694" regulatory 3333116..3333121 /regulatory_class="ribosome_binding_site" /gene="ygiK" /locus_tag="STM3171" /note="putative RBS for ygiK; RegulonDB:STMS1H003205" CDS 3333122..3334429 /gene="ygiK" /locus_tag="STM3171" /note="possible transporter; hypothetical 46.1 Kda protein in plsC 3'region. (SW:YGIK_SALTY)" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_462086.1" /db_xref="GeneID:1254694" /translation="MDFEYIYPIIVLFGSFAIILAVGVPITFAIGLSSLFSILIALPP DAAISVISQKMTVGLDGFTLLAIPFFVLAGNIMNTGGIARRLVNLAQALVGRLPGSLA HCNILANTLFGAISGSAVASAAAVGGIMSPLQEKEGYSPAFSTAINVASAPIGLMIPP SNVLIVYSLASGGTSVAALFLAGYLPGILTALALMTVAALYAHRHHYPVAERINLRQF LSVFRDSLPSLLLIFIIIGGIIGGVFTPTEASAIAVIYSLALAAIYREINVSKLRDIL LDSVVTSSIVLLLVGCSMGMSWAMTNADVPELINEMITSVSENKWVILLIINLILLFV GTFMDITPAILIFTPIFLPIAQHLGIDPVHFGIIMVFNLTIGLCTPPVGTILFVGCSI GKISIDKVVKPLLPMFLALFVVMAMICYFPQLSLLLPTLFAPS" misc_feature 3333146..3334417 /gene="ygiK" /locus_tag="STM3171" /note="TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]; Region: DctQ; COG1593" /db_xref="CDD:441201" gene complement(3334474..3335897) /gene="sufI" /locus_tag="STM3172" /db_xref="GeneID:1254695" CDS complement(3334474..3335886) /gene="sufI" /locus_tag="STM3172" /note="putative periplasmic protein; SUFI protein precursor. (SW:SUFI_SALTY)" /codon_start=1 /transl_table=11 /product="suppressor of ftsI" /protein_id="NP_462087.1" /db_xref="GeneID:1254695" /translation="MSFSRRQFLQASGIALCAGAIPLRANAAGQQQPLPVPPLLESRR GQPLFMTLQRAHWSFTQGTRAPVWGVNGRYLGPTIRVWKGDDVKLIYSNRLAENVSMT VAGLLVPGPLMGGPARMMSPNADWAPVLPIRQSAATLWYHANTPNRTAQQVYNGLAGM WLVEDDISKTLPIPNHYGVDDFPVIIQDKRLDNFGTPEYSEPGSGGFVGDTLLVNGAQ SPYVEVSRGWVRLRLLNASNSRRYQLQMSDGRALHVISGDQGFLPAPVSVKQLSLAPG ERREILVDMTNGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLVTD NLPMRLLPTEIMSGAPVRSRDISLGDDPGINGQLWDVNRIDITAQQGTWERWTVRADM PQSFHIEGVSFLIRNVNGAMPFPEDRGWKDTVWVDGQVELLVYYGQPSWPHFPFYFNS QTLEMADRGSIGQMLVNPAS" misc_feature complement(3334480..3335886) /gene="sufI" /locus_tag="STM3172" /note="FtsI repressor; Provisional; Region: PRK10883" /db_xref="CDD:182808" regulatory complement(3335892..3335897) /regulatory_class="ribosome_binding_site" /gene="sufI" /locus_tag="STM3172" /note="putative RBS for sufI; RegulonDB:STMS1H003206" gene complement(3335960..3336706) /gene="plsC" /locus_tag="STM3173" /db_xref="GeneID:1254696" CDS complement(3335960..3336697) /gene="plsC" /locus_tag="STM3173" /EC_number="2.3.1.51" /note="1-acyl-SN-glycerol-3-phosphate acyltransferase. (SW:PLSC_SALTY)" /codon_start=1 /transl_table=11 /product="1-acyl-sn-glycerol-3-phosphate acyltransferase" /protein_id="NP_462088.1" /db_xref="GeneID:1254696" /translation="MLYIFRLIVTVIYSILVCVFGSIYCLFSPRNPKHVATFGHMFGR LAPLFGLKVECRKPADAENYGNAIYIANHQNNYDMVTAANIVQPPTVTVGKKSLLWIP FFGQLYWLTGNLLIDRNNRAKAHSTIAAVVNHFKKRRISIWMFPEGTRSRGRGLLPFK TGAFHAAIAAGVPIIPVCVSNTSNKVNLNRLNNGLVIVEMLPPVDVSEYGKDQVRELA AHCRALMEQKIAELDKEVAEREATGKV" misc_feature complement(3335963..3336697) /gene="plsC" /locus_tag="STM3173" /note="1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional; Region: PRK15018" /db_xref="CDD:184979" misc_feature complement(order(3336248..3336256,3336407..3336418, 3336464..3336466,3336470..3336472,3336479..3336481)) /gene="plsC" /locus_tag="STM3173" /note="putative acyl-acceptor binding pocket [active]" /db_xref="CDD:153251" regulatory complement(3336701..3336706) /regulatory_class="ribosome_binding_site" /gene="plsC" /locus_tag="STM3173" /note="putative RBS for plsC; RegulonDB:STMS1H003207" gene complement(3336954..3339227) /gene="parC" /locus_tag="STM3174" /db_xref="GeneID:1254697" CDS complement(3336954..3339212) /gene="parC" /locus_tag="STM3174" /EC_number="5.99.1.-" /note="topoisomerase IV subunit A. (SW:PARC_SALTY)" /codon_start=1 /transl_table=11 /product="DNA topoisomerase IV, subunit A" /protein_id="NP_462089.1" /db_xref="GeneID:1254697" /translation="MSDMAERLALHEFTENAYLNYSMYVIMDRALPFIGDGLKPVQRR IVYAMSELGLNATAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDG QGNWGAPDDPKSFAAMRYTESRLSKYAELLLSELGQGTADWVPNFDGTMQEPKMLPAR LPNILLNGTTGIAVGMATDIPPHNLREVAKAAITLIEQPKTTLDQLLDIVQGPDYPTE AEIITPRAEIRKIYENGRGSVRMRAVWTKEDGAVVISALPHQVSGAKVLEQIAAQMRN KKLPMVDDLRDESDHENPTRLVIVPRSNRVDMEQVMNHLFATTDLEKSYRINLNMIGL DGRPAVKNLLEILTEWLAFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEI IRSEDEPKPALMSRFGISETQAEAILELKLRHLAKLEEMKIRGEQDELEKERDQLQGI LASERKMNTLLKKELQADADAYGDDRRSPLREREEAKAMSEHDMLPSEPVTIVLSQMG WVRSAKGHDIDAPGLNYKAGDSFKAAVKGKSNQPVVFIDTTGRSYAIDPITLPSARGQ GEPLTGKLTLPPGATVEHMLMEGDDQKLLMASDAGYGFVCTFNDLVARNRAGKTLITL PENAHVMPPLVIEDEHDMLLAITQAGRMLMFPVDSLPQLSKGKGNKIINIPSAEAAKG DDGLAHLYVLPPQSTLTIHVGKRKIKLRPEELQKVVGERGRRGTLMRGLQRIDRIEID SPHRVSHGDSEE" misc_feature complement(3336999..3339200) /gene="parC" /locus_tag="STM3174" /note="DNA topoisomerase IV, A subunit, proteobacterial; Region: parC_Gneg; TIGR01062" /db_xref="CDD:130134" misc_feature complement(3337599..3337718) /gene="parC" /locus_tag="STM3174" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(3337452..3337592) /gene="parC" /locus_tag="STM3174" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(3337305..3337439) /gene="parC" /locus_tag="STM3174" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" misc_feature complement(3337134..3337295) /gene="parC" /locus_tag="STM3174" /note="GyrA_CTD repeat [structural motif]; Region: GyrA_CTD repeat" /db_xref="CDD:293790" regulatory complement(3339222..3339227) /regulatory_class="ribosome_binding_site" /gene="parC" /locus_tag="STM3174" /note="putative RBS for parC; RegulonDB:STMS1H003208" gene complement(3339323..3340196) /locus_tag="STM3175" /db_xref="GeneID:1254698" CDS complement(3339323..3340189) /locus_tag="STM3175" /note="araC family; similar to E. coli orf, hypothetical protein (AAC76059.1); Blastp hit to AAC76059.1 (160 aa), 54% identity in aa 6 - 159" /codon_start=1 /transl_table=11 /product="putative bacterial regulatory helix-turn-helix protein" /protein_id="NP_462090.1" /db_xref="GeneID:1254698" /translation="MNDLISAAYSERLRRVCDHIERHLDEPLSIEALSRMAHSSPFHF HRQFTTWSGLPLYRYIQWLRLRRASWRLAFNPQDKVIDIALDAGFQNPESFTRAFKTA FGQSPRRFRQSPDWLAWHQRVPKLALQEQHVMDVKIVEFPPTRVAMLTHLGHPDKVNA SAAKFIAWRRETGQSPIASSQTFGIAWHDPQTTPPAQFRFDICGSVRQPIAENDVGVV NSEIPGGRCAVVRHQGSLDSLPESVWYLFREWLPASGETPRDFPVFFQYLNFVHEVAE HELLTDIYLPLR" misc_feature complement(3339326..3340189) /locus_tag="STM3175" /note="DNA gyrase inhibitor GyrI/SbmC [Replication, recombination and repair]; Region: SbmC; COG3449" /db_xref="CDD:442672" regulatory complement(3340191..3340196) /regulatory_class="ribosome_binding_site" /locus_tag="STM3175" /note="putative RBS for STM3175; RegulonDB:STMS1H003209" gene complement(3340261..3340668) /gene="ygiW" /locus_tag="STM3176" /db_xref="GeneID:1254699" CDS complement(3340261..3340653) /gene="ygiW" /locus_tag="STM3176" /note="similar to E. coli orf, hypothetical protein (AAC76060.1); Blastp hit to AAC76060.1 (130 aa), 89% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_462091.1" /db_xref="GeneID:1254699" /translation="MKKLAAIVAVMALCSTPVLAAQQGGFSGPSATQTQGGGFVGPNG SSTTVESAKSLRDDAWVTLRGNIVERISDDLYVFKDATGTINVDIDHKRWNGLTVTPQ DTVEIQGEVDKDWNSVEIDVKQIRKVNP" misc_feature complement(3340273..3340650) /gene="ygiW" /locus_tag="STM3176" /note="TIGR00156 family protein; Region: TIGR00156" /db_xref="CDD:129260" regulatory complement(3340663..3340668) /regulatory_class="ribosome_binding_site" /gene="ygiW" /locus_tag="STM3176" /note="putative RBS for ygiW; RegulonDB:STMS1H003210" gene 3340793..3341464 /gene="ygiX" /locus_tag="STM3177" /db_xref="GeneID:1254700" regulatory 3340793..3340798 /regulatory_class="ribosome_binding_site" /gene="ygiX" /locus_tag="STM3177" /note="putative RBS for ygiX; RegulonDB:STMS1H003211" CDS 3340805..3341464 /gene="ygiX" /locus_tag="STM3177" /note="OmpR family; similar to E. coli putative 2-component transcriptional regulator (AAC76061.1); Blastp hit to AAC76061.1 (219 aa), 87% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_462092.1" /db_xref="GeneID:1254700" /translation="MRILLVEDDTLIGDGIKAGLSKMGFSVDWFTEGRPGKEALYSAP YDAVILDLTLPGMDGRDILREWREKGKQEPVLILTARDALAERVEGLRLGADDYLCKP FALIEVAARLEALVRRASGQASSELRHGQVTLNPGNLVATLAGEPLALKPKEFALLEL LLRNKGRVLPRKLIEEKLYNWDDDVSSNAVEVHVHHLRRKLGSEFIRTVHGIGYTLGD A" misc_feature 3340805..3341461 /gene="ygiX" /locus_tag="STM3177" /note="two-component system response regulator QseB; Region: PRK10336" /db_xref="CDD:182387" gene 3341450..3342810 /gene="ygiY" /locus_tag="STM3178" /db_xref="GeneID:1254701" regulatory 3341450..3341455 /regulatory_class="ribosome_binding_site" /gene="ygiX" /locus_tag="STM3177" /note="putative RBS for ygiY; RegulonDB:STMS1H003212" CDS 3341461..3342810 /gene="ygiY" /locus_tag="STM3178" /EC_number="2.7.3.-" /note="similar to E. coli putative 2-component sensor protein (AAC76062.1); Blastp hit to AAC76062.1 (449 aa), 79% identity in aa 1 - 449" /codon_start=1 /transl_table=11 /product="putative sensory histidine kinase in regulatory system" /protein_id="NP_462093.1" /db_xref="GeneID:1254701" /translation="MKLTQRLSLRVRLTLIFLILVSITWAISSFVAWRKTTDNVDELF DTQLMLFARRLSTLDLNEINAPQRMAHTPKKLKHGHIDDDALAFAIFSADGKMLLHDG DNGQDIPYRYRREGFDNGYLKDDNDLWRFLWLNSADGKYRIVVGQEWDYREDMALAIV AAQLTPWLIALPFMLLILLLLLHRELRPLKKLAQALRFRSPESETPLDAKGVPSEVRP LVEALNQLFSRIHSMMVRERRFTSDAAHELRSPLAALKVQTEVAQLSGDDPLSRDKAL TQLHAGIDRATRLVDQLLTLSRLDSLNNLQDVAEISLEELLQSAVMDIYHPAQQANID VRLQLNAHDVIRTGQPLLLSLLVRNLLDNAIRYSPQGSVVDVTLHARSFTVRDNGPGV APEILTHIGERFYRPPGQSVTGSGLGLSIVRRIATLHGMTVSFGNAAEGGFEAVVSW" misc_feature 3341461..3342807 /gene="ygiY" /locus_tag="STM3178" /note="sensor protein QseC; Provisional; Region: PRK10337" /db_xref="CDD:182388" gene 3342906..3343498 /gene="mdaB" /locus_tag="STM3179" /db_xref="GeneID:1254702" regulatory 3342906..3342911 /regulatory_class="ribosome_binding_site" /gene="mdaB" /locus_tag="STM3179" /note="putative RBS for mdaB; RegulonDB:STMS1H003213" CDS 3342917..3343498 /gene="mdaB" /locus_tag="STM3179" /note="drug modulator; similar to E. coli modulator of drug activity B (AAC76064.1); Blastp hit to AAC76064.1 (193 aa), 92% identity in aa 1 - 192" /codon_start=1 /transl_table=11 /product="NADPH specific quinone oxidoreductase" /protein_id="NP_462094.1" /db_xref="GeneID:1254702" /translation="MSNILIINGAKKFAHSNGQLNDTLTEVADGLLRDLGHQVKIVRA DSDYDIKEEVQNFVWADVVIWQMPGWWMGAPWTVKKYMDDVFTEGHGTLYASDGRTRS DAAKKYGSGGLVQGKKYMLSLTWNAPMEAFTEKDQFFHGVGVDGVYLPFHKANQFLGM DALPTFIANDVIKMPDVPRYTAEYRKHLSEIFA" misc_feature 3342920..3343480 /gene="mdaB" /locus_tag="STM3179" /note="Flavodoxin-like fold; Region: Flavodoxin_2; pfam02525" /db_xref="CDD:426816" gene 3343518..3343844 /gene="ygiN" /locus_tag="STM3180" /db_xref="GeneID:1254703" regulatory 3343518..3343523 /regulatory_class="ribosome_binding_site" /gene="ygiN" /locus_tag="STM3180" /note="putative RBS for ygiN; RegulonDB:STMS1H003214" CDS 3343530..3343844 /gene="ygiN" /locus_tag="STM3180" /note="similar to E. coli orf, hypothetical protein (AAC76065.1); Blastp hit to AAC76065.1 (104 aa), 90% identity in aa 1 - 104" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462095.1" /db_xref="GeneID:1254703" /translation="MLTVIAEIRTRPGQHHRQAVLDQFAKIIPTVLKEEGCHGYAPMV DHAAGVSFQTLAPDSIVMIEQWESVAHLEAHLQTPHMKAYSDAVKDDVLEMNIRILES GV" misc_feature 3343533..3343832 /gene="ygiN" /locus_tag="STM3180" /note="Quinol monooxygenase YgiN [Energy production and conversion]; Region: YgiN; COG1359" /db_xref="CDD:440970" gene complement(3343969..3345861) /gene="parE" /locus_tag="STM3181" /db_xref="GeneID:1254704" CDS complement(3343969..3345861) /gene="parE" /locus_tag="STM3181" /EC_number="5.99.1.-" /note="topoisomerase IV subunit B. (SW:PARE_SALTY)" /codon_start=1 /transl_table=11 /product="DNA topoisomerase IV, subunit B" /protein_id="NP_462096.1" /db_xref="GeneID:1254704" /translation="MTQTYNADAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSV DEALAGHAKRVDVILHADQSLEVIDDGRGMPVDIHPEEGVPAVELILCRLHAGGKFSN KNYQFSGGLHGVGISVVNALSKRVEVTVRRDGQVYNIAFENGEKVQDLQVVGTCGKRN TGTSVHFWPDESFFDSPRFSVSRLMHVLKAKAVLCPGVEITFKDEVNNSEQRWCYQDG LNDYLGEAVNGLPTLPEKPFIGNFNGETEAVDWALLWLPEGGELLTESYVNLIPTMQG GTHVNGLRQGLLDAMREFCEYRNILPRGVKLSAEDIWDRCAYVLSVKMQDPQFAGQTK ERLSSRQCAAFVSGVVKDAFSLWLNQNVQAAEQLAEMAIASAQRRLRAAKKVVRKKLT SGPALPGKLADCTAQDLNRTELFLVEGDSAGGSAKQARDREYQAIMPLKGKILNTWEV SSDEVLASQEVHDISVAIGIDPDSDDLSQLRYGKICILADADSDGLHIATLLCALFVR HFRALVKNGHVYVALPPLYRIDLGKEVYYALTEEEKAGVLEQLKRKKGKPNVQRFKGL GEMNPMQLRETTLDPNTRRLVQLTISDEDDQRTNAMMDMLLAKKRSEDRRNWLQEKGD LADLDV" misc_feature complement(3343984..3345858) /gene="parE" /locus_tag="STM3181" /note="DNA topoisomerase IV, B subunit, proteobacterial; Region: parE_Gneg; TIGR01055" /db_xref="CDD:130127" gene complement(3345889..3346480) /gene="yqiA" /locus_tag="STM3182" /db_xref="GeneID:1254705" CDS complement(3345889..3346470) /gene="yqiA" /locus_tag="STM3182" /note="similar to E. coli orf, hypothetical protein (AAC76067.1); Blastp hit to AAC76067.1 (193 aa), 93% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="putative esterase" /protein_id="NP_462097.1" /db_xref="GeneID:1254705" /translation="MSTLLYLHGFNSSPRSAKACQLKNWLAERHPHVEMIVPQLPPYP ADAAELLESLVLEHGGAPLGLVGSSLGGYYATWLSQCFMLPAVVVNPAVRPFELLTDY LGQNENPYTGQQYVLESRHIYDLKVMQIDPLEAPDLIWLLQQTGDEVLYYRQAVAYYA SCRQTVTEGGNHAFTGFEDYFNQIVDFLGLHSC" misc_feature complement(3345901..3346470) /gene="yqiA" /locus_tag="STM3182" /note="esterase YqiA; Provisional; Region: PRK11071" /db_xref="CDD:182945" gene complement(3346470..3347308) /gene="icc" /locus_tag="STM3183" /db_xref="GeneID:1254706" CDS complement(3346470..3347297) /gene="icc" /locus_tag="STM3183" /note="similar to E. coli regulator of lacZ (AAC76068.1); Blastp hit to AAC76068.1 (275 aa), 92% identity in aa 1 - 275" /codon_start=1 /transl_table=11 /product="cyclic 3',5'-adenosine monophosphate phosphodiesterase" /protein_id="NP_462098.1" /db_xref="GeneID:1254706" /translation="MESLLTLPLAGEARVRILQITDTHLFAEKHETLLGVNTWESYQA VLEAIRAQQYEYDLIVATGDLAQDQSAAAYQHFAEGIASFRAPCVWLPGNHDFQPAMY SALQEAGISPAKRVLIGEQWQILLLDSQVFGVPHGELSEFQLEWLERKLADAPERQTL LLLHHHPLPAGCSWLDQHSLRNAGELDSVLANFPRVKYLLCGHIHQELDLDWNGRRLL ASPSTCVQFKPHCANFTLDTIAPGWRTLELRANGVLETEVHRLQDTRFRPDTASEGY" misc_feature complement(3346473..3347297) /gene="icc" /locus_tag="STM3183" /note="cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional; Region: PRK11148" /db_xref="CDD:182997" misc_feature complement(order(3346623..3346625,3346683..3346685, 3346689..3346691,3346806..3346808,3347013..3347018, 3347097..3347099,3347106..3347108,3347226..3347228, 3347232..3347234)) /gene="icc" /locus_tag="STM3183" /note="active site" /db_xref="CDD:277347" misc_feature complement(order(3346683..3346685,3346689..3346691, 3346806..3346808,3347016..3347018,3347106..3347108, 3347226..3347228,3347232..3347234)) /gene="icc" /locus_tag="STM3183" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:277347" misc_feature complement(order(3346542..3346544,3346548..3346550, 3346557..3346559,3346644..3346646,3346650..3346658, 3346665..3346679,3346698..3346700,3346704..3346706, 3346785..3346790,3346794..3346796,3347061..3347063, 3347088..3347090,3347097..3347099,3347154..3347159, 3347166..3347171,3347178..3347180,3347187..3347189)) /gene="icc" /locus_tag="STM3183" /note="homohexamer interface [polypeptide binding]; other site" /db_xref="CDD:277347" regulatory complement(3346475..3346480) /regulatory_class="ribosome_binding_site" /gene="yqiA" /locus_tag="STM3182" /note="putative RBS for yqiA; RegulonDB:STMS1H003215" regulatory complement(3347303..3347308) /regulatory_class="ribosome_binding_site" /gene="icc" /locus_tag="STM3183" /note="putative RBS for icc; RegulonDB:STMS1H003216" gene complement(3347322..3347753) /gene="yqiB" /locus_tag="STM3184" /db_xref="GeneID:1254707" CDS complement(3347322..3347744) /gene="yqiB" /locus_tag="STM3184" /note="similar to E. coli putative enzyme (AAC76069.1); Blastp hit to AAC76069.1 (140 aa), 95% identity in aa 1 - 140" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462099.1" /db_xref="GeneID:1254707" /translation="MKRYTPDFPEMMRLCETNFSQLRRLLPRNDAPGETVSYQVGNVQ YRLTIVESTRYTTLVTIEQTTPAITYWSLPSLTVRLYHDAMVAEVCSSQQIFRFKARY DYPNKKLHQRDEKHQINQFLADWLRFCLAHGAMAIPVY" misc_feature complement(3347325..3347744) /gene="yqiB" /locus_tag="STM3184" /note="DUF1249 family protein; Region: PRK11039" /db_xref="CDD:182921" gene complement(3347741..3348385) /gene="yqiE" /locus_tag="STM3185" /db_xref="GeneID:1254708" CDS complement(3347741..3348373) /gene="yqiE" /locus_tag="STM3185" /EC_number="3.6.1.13" /note="similar to E. coli orf, hypothetical protein (AAC76070.1); Blastp hit to AAC76070.1 (209 aa), 87% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="putative resistance protein" /protein_id="NP_462100.1" /db_xref="GeneID:1254708" /translation="MRKSDNLPVTFTKSDVEIIARETRYRGFFSLDVYRFRHRLFNGE MSGEVKREIFERGHAAVLLPFDPERDEVVLVEQIRIAAYDTSVTPWLLEMVAGMIEEG ETIEAVARREAMEEAGLTVGRTRPVISYLASPGGTSERSSILVGEVDATTAVGIHGLA DENEDIRVHVVSREQAYQWVEEGKIDNAAAVIALQWLQLHHQELKNEWKK" misc_feature complement(3347744..3348349) /gene="yqiE" /locus_tag="STM3185" /note="ADP-ribose pyrophosphatase NudF; Provisional; Region: nudF; PRK10729" /db_xref="CDD:182682" regulatory complement(3347748..3347753) /regulatory_class="ribosome_binding_site" /gene="yqiB" /locus_tag="STM3184" /note="putative RBS for yqiB; RegulonDB:STMS1H003217" regulatory complement(3348380..3348385) /regulatory_class="ribosome_binding_site" /gene="yqiE" /locus_tag="STM3185" /note="putative RBS for yqiE; RegulonDB:STMS1H003218" gene 3348574..3350049 /gene="tolC" /locus_tag="STM3186" /db_xref="GeneID:1254709" CDS 3348574..3350049 /gene="tolC" /locus_tag="STM3186" /note="specific tolerance to colicin E1; segregation of daughter chromosomes; role in organic solvent tolerance; similar to E. coli outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (AAC76071.1); Blastp hit to AAC76071.1 (495 aa), 89% identity in aa 1 - 495" /codon_start=1 /transl_table=11 /product="outer membrane channel" /protein_id="NP_462101.3" /db_xref="GeneID:1254709" /translation="MQMKKLLPILIGLSLSGFSTLSQAENLMQVYQQARLSNPELRKS AADRDAAFEKINEARSPLLPQLGLGADYTYSNGYRDANGINSNETSASLQLTQTLFDM SKWRGLTLQEKAAGIQDVTYQTDQQTLILNTANAYFKVLNAIDVLSYTQAQKEAIYRQ LDQTTQRFNVGLVAITDVQNARAQYDTVLANEVTARNNLDNAVEELRQVTGNYYPELA SLNVEHFKTDKPKAVNALLKEAENRNLSLLQARLSQDLAREQIRQAQDGHLPTLNLTA STGISDTSYSGSKTNSTQYDDSNMGQNKIGLNFSLPLYQGGMVNSQVKQAQYNFVGAS EQLESAHRSVVQTVRSSFNNINASISSINAYKQAVVSAQSSLDAMEAGYSVGTRTIVD VLDATTTLYDAKQQLANARYTYLINQLNIKYALGTLNEQDLLALNSTLGKPIPTSPES VAPETPDQDAAADGYNAHSAAPAVQPTAARANSNNGNPFRH" misc_feature 3348580..3349923 /gene="tolC" /locus_tag="STM3186" /note="outer membrane channel protein; Reviewed; Region: tolC; PRK09465" /db_xref="CDD:236529" gene 3350249..3350933 /gene="ygiB" /locus_tag="STM3187" /db_xref="GeneID:1254710" regulatory 3350249..3350254 /regulatory_class="ribosome_binding_site" /gene="ygiB" /locus_tag="STM3187" /note="putative RBS for ygiB; RegulonDB:STMS1H003219" CDS 3350262..3350933 /gene="ygiB" /locus_tag="STM3187" /note="similar to E. coli orf, hypothetical protein (AAC76073.1); Blastp hit to AAC76073.1 (234 aa), 96% identity in aa 12 - 234" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462102.1" /db_xref="GeneID:1254710" /translation="MKRTKSIHHASFRKSWSARHLTPVALAVTAVFMLAGCEKSDETV SLYQNADDCSAANPGKSAECTTAYNNALKEAERTAPKYATREDCVAEFGEGQCQQAPA QAGMAPENQAQAQQSSGSFWMPLMAGYMMGRLMGGGAGFAQQPLFSSKNPASPAYGKY TDAAGKNYGAAQPGRTMTVPKTAMAPKPATTTTVTRGGFGESVAKQSTMQRSAAGTST RSMGG" misc_feature 3350262..3350930 /gene="ygiB" /locus_tag="STM3187" /note="DUF1190 family protein; Region: PRK11653" /db_xref="CDD:236948" gene 3350926..3352102 /gene="ygiC" /locus_tag="STM3188" /db_xref="GeneID:1254711" regulatory 3350926..3350931 /regulatory_class="ribosome_binding_site" /gene="ygiB" /locus_tag="STM3187" /note="putative RBS for ygiC; RegulonDB:STMS1H003220" CDS 3350939..3352102 /gene="ygiC" /locus_tag="STM3188" /note="similar to E. coli putative synthetase/amidase (AAC76074.1); Blastp hit to AAC76074.1 (386 aa), 94% identity in aa 1 - 386" /codon_start=1 /transl_table=11 /product="putative glutathionylspermidine synthase" /protein_id="NP_462103.1" /db_xref="GeneID:1254711" /translation="MERVSITERPDWRDKATEYGFNFHTMYGEPYWCEDAYYKLTLAQ VEKLEDVTAELHQMCLKVVERVIASDELMTKFRIPKHTWGFVRQSWQTQQPSLYSRLD LAWDGIGEPKLLENNADTPTSLYEAAFFQWIWLEDQINAGNLPEGSDQFNSLQEKLIE RFAELREQYGFQLLHLTCCRDTVEDRGTIQYLQDCAAEAEIATEFLYIDDIGLGEKGQ FTDLQDQVIANLFKLYPWEFMLREMFSTKLEDAGVRWLEPAWKSIISNKALLPLLWEM FPDHPNLLPAYFAEDEHPPMDKYVVKPIFSREGANVSIIENGKTIESVEGPYGEEGMI VQQFYPLPKFGDSYTLIGSWLINDQPAGIGIREDRALITQDLSRFYPHIFVEG" misc_feature 3350939..3352096 /gene="ygiC" /locus_tag="STM3188" /note="Glutathionylspermidine synthase, CHAP domain [Amino acid transport and metabolism]; Region: Gsp; COG0754" /db_xref="CDD:440517" gene complement(3352164..3353007) /gene="ygiD" /locus_tag="STM3189" /db_xref="GeneID:1254712" CDS complement(3352164..3352994) /gene="ygiD" /locus_tag="STM3189" /note="similar to E. coli orf, hypothetical protein (AAC76075.1); Blastp hit to AAC76075.1 (271 aa), 86% identity in aa 6 - 271" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462104.1" /db_xref="GeneID:1254712" /translation="MVMLTKCLSSKDNIMSLTCMPALFLGHGSPMNVLDDNDYTRAWR RLGEALPRPQAIVVVSAHWYTRGTGVTAMERPQTLHDFGGFPQALYDTHYPAPGSPAL AQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEV GRKLATLRDEGVMLVASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQ HPLVNYLQHEGGALSNPTPEHFLPLLYVLGAWDGKEPITIPVDGIEMGSISMLSVQVG " misc_feature complement(order(3352191..3352196,3352278..3352280, 3352449..3352451,3352617..3352619,3352809..3352811, 3352908..3352916)) /gene="ygiD" /locus_tag="STM3189" /note="putative active site [active]" /db_xref="CDD:153375" misc_feature complement(order(3352278..3352280,3352809..3352811, 3352914..3352916)) /gene="ygiD" /locus_tag="STM3189" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:153375" misc_feature complement(3352167..3352904) /gene="ygiD" /locus_tag="STM3189" /note="LigB family dioxygenase; Provisional; Region: PRK10628" /db_xref="CDD:182598" regulatory complement(3353002..3353007) /regulatory_class="ribosome_binding_site" /gene="ygiD" /locus_tag="STM3189" /note="putative RBS for ygiD; RegulonDB:STMS1H003221" gene 3353081..3353866 /gene="ygiE" /locus_tag="STM3190" /db_xref="GeneID:1254713" regulatory 3353081..3353086 /regulatory_class="ribosome_binding_site" /gene="ygiE" /locus_tag="STM3190" /note="putative RBS for ygiE; RegulonDB:STMS1H003222" CDS 3353093..3353866 /gene="ygiE" /locus_tag="STM3190" /note="similar to E. coli orf, hypothetical protein (AAC76076.1); Blastp hit to AAC76076.1 (257 aa), 92% identity in aa 1 - 257" /codon_start=1 /transl_table=11 /product="putative divalent heavy-metal cations transporter" /protein_id="NP_462105.1" /db_xref="GeneID:1254713" /translation="MSVPLILTLLAGAATFIGAFLGVLGQKPSNRVLAFSLGFAAGIM LLISLMEMLPAALDTEGMSPVLGYGMFIIGLLGYFGLDRLLPHAHPQDLVQKRQQPLP GSIKRTAILLTLGISLHNFPEGIATFVTASSNLELGFGIALAVALHNIPEGLAVAGPV YAATGSKRTAIFWAGISGMAEILGGVLAWLILGSLVSPIVMAAIMAAVAGIMVALSVD ELMPLAKEIDPNNNPSYGVLCGMSIMGLSLVILQTIGIG" misc_feature 3353093..3353848 /gene="ygiE" /locus_tag="STM3190" /note="zinc transporter ZupT; Provisional; Region: PRK04201" /db_xref="CDD:235253" gene 3354502..3355474 /locus_tag="STM3191" /db_xref="GeneID:1254714" regulatory 3354502..3354507 /regulatory_class="ribosome_binding_site" /locus_tag="STM3191" /note="putative RBS for STM3191; RegulonDB:STMS1H003223" CDS 3354509..3355474 /locus_tag="STM3191" /codon_start=1 /transl_table=11 /product="putative arylsulfate sulfotransferase" /protein_id="NP_452516.1" /db_xref="GeneID:1254714" /translation="MFDQYRKTILAGAVALTCGLTAASTFAAGFQPAQPAGKLGAVVV DPYGNAPLTALVELDSHIISDVKVTVHGKGEKGVPVTYTVGKESLETYDGIPIFGLYQ KFANNVTVEYKENGKAMKDDYVVQTSAIVNHYMDNRSISDLQQTKVIKVAPGFEDRLY LVNTHTFTPQGAEFHWHGEKDKNAGILDAGPAGGALPFDIAPYTFVVDTQGEYRWWLD QDTFYDGHDMNINKRGYLMGIRETPRGTFTAVQGQHWYEFDMMGQILADHKLPRGFLD ASHESIETVNGTVLLRVGKRVTAKKTAYMFILFVTKSLRSISLAA" misc_feature 3354629..3354892 /locus_tag="STM3191" /note="Arylsulfotransferase Ig-like domain; Region: Arylsulfotran_N; pfam17425" /db_xref="CDD:407495" misc_feature 3354944..>3355396 /locus_tag="STM3191" /note="Arylsulfotransferase (ASST); Region: Arylsulfotrans; cl26042" /db_xref="CDD:421257" gene 3355510..3356304 /locus_tag="STM3192" /db_xref="GeneID:1254715" CDS 3355510..3356304 /locus_tag="STM3192" /codon_start=1 /transl_table=11 /product="putative arylsulfate sulfotransferase" /protein_id="NP_452517.1" /db_xref="GeneID:1254715" /translation="MRDALLGALDAGAVCVNVDLAHAGQQAKLEPDTPYGDALGVGAG RNWAHVNSIAYDAKDDSIILSSRHQGIVKIGRDKQVKWILAPSKGWNKQLASKLLKPV DDHGKPLTCDENGKCKDTDFDFTYTQHTAWLSSKGTLTVFDNGDGRGLEQPALPTMKY SRFVEYKIDEKKGTVQQVWEYGKERGYDFYSPITSVVEYQKDRDTMFGFGGSINLFDV GKPTVGKLNEIDYKTKEVKVEIDVLSDKPNQTHYRALLVHPTQMFK" misc_feature <3355594..3356268 /locus_tag="STM3192" /note="Arylsulfotransferase (ASST); Region: Arylsulfotrans; pfam05935" /db_xref="CDD:399139" gene 3356317..3356995 /locus_tag="STM3193" /db_xref="GeneID:1254716" regulatory 3356317..3356322 /regulatory_class="ribosome_binding_site" /locus_tag="STM3193" /note="putative RBS for STM3193; RegulonDB:STMS1H003224" CDS 3356324..3356995 /locus_tag="STM3193" /codon_start=1 /transl_table=11 /product="putative thiol-disulfide isomerase and thioredoxin" /protein_id="NP_462108.1" /db_xref="GeneID:1254716" /translation="MSSKWITSLFKSVVLTAALVTPFAASAFTEGTDYMVLEKPIPNA DKTLIKVFSYACPFCYKYDKAVTGPVSDKVADLVTFTPFHLETKGEYGKQASEVFAVL IAKDKAAGISLFDAKSQFKKAKFAWYAAYHDKKERWSDGKDPAAFIKTGLDAAGMSQA DFEAALKDPAVQETLEKWKAAYDVAKIQGVPAYVVNGKYLIYTKNIKSIDSMAELVRE LATKK" misc_feature 3356411..3356977 /locus_tag="STM3193" /note="DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol...; Region: DsbA_DsbA; cd03019" /db_xref="CDD:239317" misc_feature order(3356489..3356491,3356495..3356500,3356894..3356896) /locus_tag="STM3193" /note="catalytic residues [active]" /db_xref="CDD:239317" misc_feature 3356582..3356590 /locus_tag="STM3193" /note="hinge region; other site" /db_xref="CDD:239317" misc_feature order(3356603..3356629,3356678..3356737,3356756..3356782, 3356801..3356830) /locus_tag="STM3193" /note="alpha helical domain; other site" /db_xref="CDD:239317" gene 3357004..3357687 /locus_tag="STM3194" /db_xref="GeneID:1254717" regulatory 3357004..3357009 /regulatory_class="ribosome_binding_site" /locus_tag="STM3194" /note="putative RBS for STM3194; RegulonDB:STMS1H003225" CDS 3357010..3357687 /locus_tag="STM3194" /codon_start=1 /transl_table=11 /product="putative disulfide isomerase" /protein_id="NP_462109.1" /db_xref="GeneID:1254717" /translation="MDFIKGLWRDLRARPVDTLVRWQEQRFLWLLMAIAMGGLIILAH SFFQIYLYMAPCEQCVYIRYAMFVMVIGGVIAAINPKNIVLKLIGCIAAFYGSIMGIK FSIKLNGIHHAVHNADPDSLFGVQGCSTDPTFPFNLPLAEWAPEWFKPTGDCGYDAPI VPDGVTLSSVQQWFVDLYQQSEGWYLLPPWHFMNMAQACMLAFGLCLILLLVMSGAWA LKLARGK" misc_feature 3357019..3357684 /locus_tag="STM3194" /note="protein-disulfide oxidoreductase DsbI; Region: PRK04307" /db_xref="CDD:235276" gene complement(3357858..3358525) /gene="ribB" /locus_tag="STM3195" /db_xref="GeneID:1254718" CDS complement(3357858..3358511) /gene="ribB" /locus_tag="STM3195" /note="similar to E. coli 3,4 dihydroxy-2-butanone-4-phosphate synthase (AAC76077.1); Blastp hit to AAC76077.1 (217 aa), 96% identity in aa 1 - 217" /codon_start=1 /transl_table=11 /product="3,4 dihydroxy-2-butanone-4-phosphate synthase" /protein_id="NP_462110.1" /db_xref="GeneID:1254718" /translation="MNQTLLSSFGTPFERVELALDALREGRGVMVLDDEDRENEGDMI FPAETMTVEQMALTIRHGSGIVCLCITEDRRKQLDLPMMVENNTSAYGTGFTVTIEAA EGVTTGVSAADRVTTVRAAIKDGAKPSDLNRPGHVFPLRAQAGGVLTRGGHTEATIDL MTLAGFKPAGVLCELTNDDGTMARAPECIAFAGQHNMAVVTIEDLVAYRQAHERKAS" misc_feature complement(3357879..3358481) /gene="ribB" /locus_tag="STM3195" /note="3,4-dihydroxy-2-butanone 4-phosphate synthase [Coenzyme transport and metabolism]; Region: RibB; COG0108" /db_xref="CDD:439878" regulatory complement(3358520..3358525) /regulatory_class="ribosome_binding_site" /gene="ribB" /locus_tag="STM3195" /note="putative RBS for ribB; RegulonDB:STMS1H003226" gene 3358881..3359247 /gene="yqiC" /locus_tag="STM3196" /db_xref="GeneID:1254719" regulatory 3358881..3358886 /regulatory_class="ribosome_binding_site" /gene="yqiC" /locus_tag="STM3196" /note="putative RBS for yqiC; RegulonDB:STMS1H003227" CDS 3358888..3359247 /gene="yqiC" /locus_tag="STM3196" /note="similar to E. coli orf, hypothetical protein (AAC76078.1); Blastp hit to AAC76078.1 (116 aa), 80% identity in aa 1 - 114" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462111.3" /db_xref="GeneID:1254719" /translation="MASTYRTTIRANTYQFRETTMIDPKKIEQIARQVHESMPKGIRE FGEDIEKKIRQTLQSQLTRLDLVSREEFDVQTQVLLRTREKLALLEQRLSELEARDKP EEVKPAPAIPPVDPQQE" misc_feature 3358948..3359199 /gene="yqiC" /locus_tag="STM3196" /note="Ubiquinone biosynthesis accessory factor UbiK [Coenzyme transport and metabolism]; Region: UbiK; COG2960" /db_xref="CDD:442200" gene complement(3359321..3359539) /gene="glgS" /locus_tag="STM3197" /db_xref="GeneID:1254720" CDS complement(3359321..3359530) /gene="glgS" /locus_tag="STM3197" /note="similar to E. coli glycogen biosynthesis, rpoS dependent (AAC76085.1); Blastp hit to AAC76085.1 (66 aa), 78% identity in aa 2 - 66" /codon_start=1 /transl_table=11 /product="rpoS dependent glycogen biosynthesis protein" /protein_id="NP_462112.1" /db_xref="GeneID:1254720" /translation="MLMNNNNVYSLNNFDFLARSFARMQAEGRPVDIQAVTGNMDEEH RDWFCKRYALYCQQATQAKRLELEH" misc_feature complement(3359324..3359491) /gene="glgS" /locus_tag="STM3197" /note="Glycogen synthesis protein; Region: GlgS; cl23912" /db_xref="CDD:420087" regulatory complement(3359534..3359539) /regulatory_class="ribosome_binding_site" /gene="glgS" /locus_tag="STM3197" /note="putative RBS for glgS; RegulonDB:STMS1H003228" protein_bind complement(3359627..3359647) /note="putative binding site for CRP, RegulonDB: STMS1H000051" /bound_moiety="CRP" gene 3359775..3360408 /locus_tag="STM3198" /db_xref="GeneID:1254721" regulatory 3359775..3359780 /regulatory_class="ribosome_binding_site" /locus_tag="STM3198" /note="putative RBS for STM3198; RegulonDB:STMS1H003229" CDS 3359788..3360408 /locus_tag="STM3198" /note="similar to E. coli putative oxidoreductase (AAC76086.1); Blastp hit to AAC76086.1 (209 aa), 72% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462113.1" /db_xref="GeneID:1254721" /translation="MTLFAEYNSPYLFAIAFVFFIGVLEMISLIFGHFLSGALDAHLD HYDALSSGPAGQALHYLNIGRVPALVVLCLLAGYFGLFGILIQHGGIMLWQAPLSNLL LVPLSIVLSVFAVHYSGKILAPWLPRDESSALREEEFIGGMAIITGHAAVAGTPCEGK FTDKFGQIHYLLLEPEKGKEFKKGDKVLIVCRLSATRYLAERTFYV" misc_feature 3359809..3360387 /locus_tag="STM3198" /note="Protein of unknown function (DUF1449); Region: DUF1449; pfam07290" /db_xref="CDD:429387" gene 3360413..3362106 /gene="yqiK" /locus_tag="STM3199" /db_xref="GeneID:1254722" regulatory 3360413..3360418 /regulatory_class="ribosome_binding_site" /gene="yqiK" /locus_tag="STM3199" /note="putative RBS for yqiK; RegulonDB:STMS1H003230" CDS 3360427..3362106 /gene="yqiK" /locus_tag="STM3199" /note="similar to E. coli putative membrane protein (AAC76087.1); Blastp hit to AAC76087.1 (553 aa), 92% identity in aa 1 - 553" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462114.1" /db_xref="GeneID:1254722" /translation="MDDVFGILPSWMFTAIVAVIVLLIIGIIFARLYRRASAEQAFVR TGLGGQKVVMSGGAIVMPIFHEIIPINMNTLKLEVSRATVDSLITKDRMRVDVVVAFF VRVKPSVEGIATAAQTLGQRTLSPEDLRMLVEDKFVDALRATAAQMTMHELQDTRENF VQGVQNTVAEDLSKNGLELESVSLTNFNQTSKEHFNPNNAFDAEGLTKLTQETERRRR ERNEVEQDVEVAVREKNRDALERKLEIEQQEAFMTLEQEQQVKTRTAEQNAKIAAFEA ERHREAEQTRILAERQIQETEIEREQAVRSRKVEAEREVRIKEIEQQQVTEIANQTKS IAIAAKSEQQSQAEARANDALADAVRAQQNVETTRQTAEADRAKQVALIAAAQDAETK AVELTVRAKAEKEAAELQAAAIIELAEATRKKGLAEAEAQRALNDAINVLSDEQTSLK FKLALLQSLPAVIEKSVEPMKSIDGIKIIQVDGLNRGATAGDVAAGGANGGNLAEQAL SAALTYRTQAPLIDSLLNEIGIAGGSLKALTTPLVSSATDEINREATIKEQ" misc_feature 3360511..3362046 /gene="yqiK" /locus_tag="STM3199" /note="Uncharacterized membrane protein YqiK, contains Band7/PHB/SPFH domain [Function unknown]; Region: YqiK; COG2268" /db_xref="CDD:441869" gene complement(3362566..3364011) /gene="rfaE" /locus_tag="STM3200" /db_xref="GeneID:1254723" CDS complement(3362566..3363999) /gene="rfaE" /locus_tag="STM3200" /EC_number="2.7.-.-" /note="bifunctional; similar to E. coli putative kinase (AAC76088.1); Blastp hit to AAC76088.1 (477 aa), 93% identity in aa 1 - 476" /codon_start=1 /transl_table=11 /product="putative sugar nucleotide transferase domain of ADP-L-glycero-D-manno-heptose synthase" /protein_id="NP_462115.1" /db_xref="GeneID:1254723" /translation="MKVNLPAFERAGVMVVGDVMLDRYWYGPTCRISPEAPVPVVKVN TVEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKTLAEVNVKCDFVSVPTHP TITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALGSIGALVLSDYAKGALTSV QTMISLARQAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVAGKCKSEDELVERGMK LIADYDLSALLVTRSEQGMTLLQPNKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAA GNTLEEACYFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELRQAVAS ARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGESRPVNP LEQRMIVLGALESVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSEEVWANG GEVMVLNFEDGCSTTNIIKKIQTESEK" misc_feature complement(3362584..3363999) /gene="rfaE" /locus_tag="STM3200" /note="bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE; Region: PRK11316" /db_xref="CDD:183085" regulatory complement(3364006..3364011) /regulatory_class="ribosome_binding_site" /gene="rfaE" /locus_tag="STM3200" /note="putative RBS for rfaE; RegulonDB:STMS1H003231" gene complement(3364047..3366905) /gene="glnE" /locus_tag="STM3201" /db_xref="GeneID:1254724" CDS complement(3364047..3366890) /gene="glnE" /locus_tag="STM3201" /EC_number="2.7.7.42" /note="regulates P-II (GlnB) and GlnK; similar to E. coli adenylylating enzyme for glutamine synthetase (AAC76089.1); Blastp hit to AAC76089.1 (946 aa), 87% identity in aa 1 - 944" /codon_start=1 /transl_table=11 /product="adenylyl transferase for glutamine synthetase" /protein_id="NP_462116.1" /db_xref="GeneID:1254724" /translation="MTPLSSPLSQYWQTVVERLPEGFTETSLSVQAKSVLTFSDFALD SVIAHPEWLAELESASPQADEWRHYAGWLQEALAGVCDDASLMRELRFFRRRIMVRIA WAQTLSLVDDETILQQLSHLAETLIVGARDWLYAACCREWGTPCNPQGVPQPLLILGM GKLGGGELNFSSDIDLIFAWPEHGETRGGRRELDNAQFFTRLGQRLIKALDQPTMDGF VYRVDMRLRPFGDSGPLVLSFAALEDYYQEQGRDWERYAMVKARLMGDNDDAWSRELR AMLRPFVFRRYIDFSVIQSLRNMKGMIAREVRRRGLKDNIKLGAGGIREIEFIVQVFQ LIRGGREPSLQSRSLLPTLDAIAALHLLPENDVAQLRVAYLFLRRLENLLQSINDEQT QTLPADDLNRARLAWGMKAENWPQLVGELTDHMANVRRVFNELIGDDEADTPQEEERS EPWREVWQDALQEDDSTPVLAHLADEERRQVLTLIADFRKELDKRPIGPRGRQVLDQL MPHLLADVCSREDAAVTLSRITPLLAGIVTRTTYLELLSEFPGALKHLIMLCAASPMI ASQLARYPLLLDELLDPGTLYQPTATDAYRDELRQYLLRVPEEDEEQQLEALRQFKQA QLLRIAAADIAGTLPVMKVSDHLTWLAEAMIDAVVQQAWTQMVARYGQPAHLDERQGR GFAVVGYGKLGGWELGYSSDLDLIFLHDCPMDVMTNGEREIDGRQFYLRLAQRIMHLF STRTSSGILYEVDARLRPSGAAGMLVTSADAFADYQQHEAWTWEHQALVRARVVYGDP QLTSQFDAVRRTIMTTARDGKTLQTEVREMREKMRAHLGNKHRDRFDIKADEGGITDI EFIAQYLVLRYAHEKPKLTRWSDNVRILELLAQNGIMDEHEAQALTVAYTTLRDELHH LALQELPGHVAQTCFSKERALVQASWRKWLVAV" misc_feature complement(3364056..3366890) /gene="glnE" /locus_tag="STM3201" /note="bifunctional [glutamate--ammonia ligase]-adenylyl-L-tyrosine phosphorylase/[glutamate--ammonia-ligase] adenylyltransferase; Region: PRK11072" /db_xref="CDD:236836" regulatory complement(3366900..3366905) /regulatory_class="ribosome_binding_site" /gene="glnE" /locus_tag="STM3201" /note="putative RBS for glnE; RegulonDB:STMS1H003232" gene complement(3367008..3368315) /gene="ygiF" /locus_tag="STM3202" /db_xref="GeneID:1254725" CDS complement(3367008..3368309) /gene="ygiF" /locus_tag="STM3202" /note="similar to E. coli orf, hypothetical protein (AAC76090.1); Blastp hit to AAC76090.1 (433 aa), 85% identity in aa 1 - 433" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462117.1" /db_xref="GeneID:1254725" /translation="MAQEIELKFIVNHDAVDALRNHLHTLGGEHHAPSQLLNIYFETP DNWLRRHDMGLRIRGENGRYEMTMKIAGRVTGGLHQRPEYNVALSEPVLDLTQLPAEV WPDGNLPAGLASSVQPLFSTDFYREKWCLDVDGSRIEIALDLGDVKAGEFAEPICELE LELLRGDTRAVLKLAKQLLSQTGLRQGSLSKAARGYHLAQGNAPRENTPTTILRTAAK ATVEQGLEASLDLALSQWQYHEELWLRGDKSAKEHVLDAMGLVRHALMLFGGIVPRKA SAHLRDLLTQAEATMTSAVSAVTAVYSTQTAMAKLALTEWLVTKAWQPFLDAKAQAKM ADSFKRFADIHLSRHAAELKKVFGQPLGDKYRDQLPRLTRDIDSVLLLAGYYDAMVAQ AWLENWQGLRHAIITGQRIEIEHFRNEAINQQPFWLHSGKR" misc_feature complement(3367569..3368309) /gene="ygiF" /locus_tag="STM3202" /note="Inorganic triphosphatase YgiF, contains CYTH and CHAD domains [Inorganic ion transport and metabolism]; Region: PPPi; COG3025" /db_xref="CDD:442261" regulatory complement(3368310..3368315) /regulatory_class="ribosome_binding_site" /gene="ygiF" /locus_tag="STM3202" /note="putative RBS for ygiF; RegulonDB:STMS1H003233" gene 3368551..3369165 /gene="ygiM" /locus_tag="STM3203" /db_xref="GeneID:1254726" CDS 3368551..3369165 /gene="ygiM" /locus_tag="STM3203" /note="similar to E. coli orf, hypothetical protein (AAC76091.1); Blastp hit to AAC76091.1 (206 aa), 91% identity in aa 1 - 206" /codon_start=1 /transl_table=11 /product="putative SH3 domain protein" /protein_id="NP_462118.1" /db_xref="GeneID:1254726" /translation="MPKLRLIGLTLLALSATAVSHAEETRYVSDELNTWVRSGPGDNY RLVGTVNAGEEVTLLQSDANYGQIKDSSGRTAWIPLKELNTTPSLRTRVPDLENQVKT LTDKLNNIDTTWNQRTADMQQKVAQSDSVINGLKEENQKLKNELIVAQKKVSAANLQL DDKQRTIIMQWFMYGGGVLGIGLLLGLVLPHMIPSRKRKDRWMN" misc_feature 3368551..3369162 /gene="ygiM" /locus_tag="STM3203" /note="SH3 domain-containing protein; Provisional; Region: PRK10884" /db_xref="CDD:182809" gene 3369216..3370469 /gene="cca" /locus_tag="STM3204" /db_xref="GeneID:1254727" regulatory 3369216..3369221 /regulatory_class="ribosome_binding_site" /gene="cca" /locus_tag="STM3204" /note="putative RBS for cca; RegulonDB:STMS1H003234" CDS 3369228..3370469 /gene="cca" /locus_tag="STM3204" /EC_number="2.7.7.72" /note="similar to E. coli tRNA nucleotidyl transferase (AAC76092.1); Blastp hit to AAC76092.1 (412 aa), 90% identity in aa 1 - 411" /codon_start=1 /transl_table=11 /product="tRNA nucleotidyl transferase" /protein_id="NP_462119.1" /db_xref="GeneID:1254727" /translation="MKIYLVGGAVRDALLGLPVKDKDWVVVGATPQEMLDAGYQQVGR DFPVFLHPQTHEEYALARTERKSGSGYTGFTCYAAPDVTLEADLQRRDLTINALARDD AGQIIDPYHGRRDLEARLLRHVSPAFGEDPLRVLRVARFAARYAHLSFRIADETLALM REMTAAGELEHLTPERVWKETENALTTRNPQVYFQVLRDCGALRVLFPEIDALFGVPA PAKWHPEIDTGVHTLMTLSMAAMLSPQLDVRFATLCHDLGKGLTPKNLWPRHHGHGPA GVKLVEQLCQRLRVPNDLRDLAKLVAEYHDLIHTFPILQPKTIVKLFDAIDAWRKPQR VEQIALTSEADVRGRTGFEASDYPQGRWLREAWQVAQAVPTKEVVEAGFKGIEIREEL TKRRIAAVANWKEKRCPNPAS" misc_feature 3369228..3370454 /gene="cca" /locus_tag="STM3204" /note="multifunctional CCA addition/repair protein; Region: cca; PRK10885" /db_xref="CDD:182810" gene complement(3370574..3371408) /gene="bacA" /locus_tag="STM3205" /db_xref="GeneID:1254728" CDS complement(3370574..3371398) /gene="bacA" /locus_tag="STM3205" /EC_number="2.7.1.66" /note="possibly phosphorylates undecaprenol; similar to E. coli bacitracin resistance; possibly phosphorylates undecaprenol (AAC76093.1); Blastp hit to AAC76093.1 (273 aa), 97% identity in aa 1 - 273" /codon_start=1 /transl_table=11 /product="bacitracin resistance" /protein_id="NP_462120.3" /db_xref="GeneID:1254728" /translation="MMSDMHSLLIAAILGVVEGLTEFLPVSSTGHMIIVGHLLGFEGD TAKTFEVVIQLGSILAVVVMFWRRLFGLIGIHFGRPLQREGESKGRLTLIHILLGMIP AVVLGLVFHDTIKSLFNPINVMYALVVGGLLLIAAECLKPKEPRAPGLDDMTYRQAFM IGCFQCLALWPGFSRSGATISGGMLMGVSRYAASEFSFLLAVPMMMGATVLDLYKSWS FLTAADIPMFAVGFVTAFVVALIAIKTFLQLIKRISFIPFAIYRFVVAAAVYVVFF" misc_feature complement(3370613..3371389) /gene="bacA" /locus_tag="STM3205" /note="undecaprenyl-diphosphate phosphatase; Region: PRK00281" /db_xref="CDD:234712" regulatory complement(3371403..3371408) /regulatory_class="ribosome_binding_site" /gene="bacA" /locus_tag="STM3205" /note="putative RBS for bacA; RegulonDB:STMS1H003235" gene complement(3371493..3371861) /gene="folB" /locus_tag="STM3206" /db_xref="GeneID:1254729" CDS complement(3371493..3371855) /gene="folB" /locus_tag="STM3206" /EC_number="4.1.2.25" /note="contains dihydroneopterin triphosphate 2'-epimerase activity; similar to E. coli putative kinase (AAC76094.1); Blastp hit to AAC76094.1 (123 aa), 93% identity in aa 1 - 120" /codon_start=1 /transl_table=11 /product="dihydroneopterin aldolase" /protein_id="NP_462121.3" /db_xref="GeneID:1254729" /translation="MMDIVFIEQLSVITTIGVYDWEQTIEQKLVFDIEMAWDNRKSAK SDDVADCLSYADIADTVINHVEGGRFALVERVAEEVADLLLSRFNSPWVRIKLSKPGA VARAANVGVIIERGNNLK" misc_feature complement(3371496..3371852) /gene="folB" /locus_tag="STM3206" /note="bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase; Region: folB; PRK11593" /db_xref="CDD:183219" misc_feature complement(order(3371517..3371543,3371550..3371555, 3371775..3371801,3371817..3371849)) /gene="folB" /locus_tag="STM3206" /note="homooctamer interface [polypeptide binding]; other site" /db_xref="CDD:238298" misc_feature complement(order(3371523..3371525,3371559..3371561, 3371634..3371645,3371790..3371792,3371799..3371807)) /gene="folB" /locus_tag="STM3206" /note="active site" /db_xref="CDD:238298" regulatory complement(3371856..3371861) /regulatory_class="ribosome_binding_site" /gene="folB" /locus_tag="STM3206" /note="putative RBS for folB; RegulonDB:STMS1H003236" gene 3371947..3372570 /gene="ygiH" /locus_tag="STM3207" /db_xref="GeneID:1254730" regulatory 3371947..3371952 /regulatory_class="ribosome_binding_site" /gene="ygiH" /locus_tag="STM3207" /note="putative RBS for ygiH; RegulonDB:STMS1H003237" CDS 3371959..3372570 /gene="ygiH" /locus_tag="STM3207" /note="similar to E. coli orf, hypothetical protein (AAC76095.1); Blastp hit to AAC76095.1 (205 aa), 95% identity in aa 1 - 203" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462122.1" /db_xref="GeneID:1254730" /translation="MSAIAPGMILFAYLCGSISSAILVCRIAGLPDPRESGSGNPGAT NVLRIGGKGAAVAVLIFDILKGMLPVWGAYALGVTPFWLGLIAIAACLGHIWPVFFGF KGGKGVATAFGAIAPIGWDLTGVMAGTWLLTVLLSGYSSLGAIVSALIAPFYVWWFKP QFTFPVSMLSCLILLRHHDNIQRLWRRQETKIWTKLKKKRQKD" misc_feature 3371959..3372546 /gene="ygiH" /locus_tag="STM3207" /note="glycerol-3-phosphate 1-O-acyltransferase PlsY; Region: PRK00220" /db_xref="CDD:234691" gene complement(3372821..3373849) /gene="gcp" /locus_tag="STM3208" /db_xref="GeneID:1254731" CDS complement(3372821..3373834) /gene="gcp" /locus_tag="STM3208" /EC_number="3.4.24.57" /note="probable O-sialoglycoprotein endopeptidase. (SW:GCP_SALTY)" /codon_start=1 /transl_table=11 /product="putative O-sialoglycoprotein endopeptidase" /protein_id="NP_462123.1" /db_xref="GeneID:1254731" /translation="MRVLGIETSCDETGIAIYDDKKGLLANQLYSQVKLHADYGGVVP ELASRDHVRKTVPLIQAALKEAGLTASDIDAVAYTAGPGLVGALLVGATVGRSLAFAW NVPAIPVHHMEGHLLAPMLEDNPPEFPFVALLVSGGHTQLISVTGIGQYELLGESIDD AAGEAFDKTAKLLGLDYPGGPMLSKMASQGTAGRFVFPRPMTDRPGLDFSFSGLKTFA ANTIRSNGGDEQTRADIARAFEDAVVDTLMIKCKRALESTGFKRLVMAGGVSANRTLR AKLAEMMQKRRGEVFYARPEFCTDNGAMIAYAGMVRFKAGVTADLGVTVRPRWPLAEL PAA" misc_feature complement(3372842..3373834) /gene="gcp" /locus_tag="STM3208" /note="tRNA A37 threonylcarbamoyltransferase TsaD [Translation, ribosomal structure and biogenesis]; Region: TsaD; COG0533" /db_xref="CDD:440299" regulatory complement(3373844..3373849) /regulatory_class="ribosome_binding_site" /gene="gcp" /locus_tag="STM3208" /note="putative RBS for gcp; RegulonDB:STMS1H003238" gene 3373960..3374277 /gene="rpsU" /locus_tag="STM3209" /db_xref="GeneID:1254732" regulatory 3373960..3373968 /regulatory_class="minus_35_signal" /gene="rpsU" /locus_tag="STM3209" /note="putative -35_signal for rpsU; RegulonDB:STMLTH004581" regulatory 3373984..3373992 /regulatory_class="minus_10_signal" /gene="rpsU" /locus_tag="STM3209" /note="putative -10_signal for rpsU; RegulonDB:STMLTH004581" protein_bind 3374013..3374029 /gene="rpsU" /locus_tag="STM3209" /note="putative binding site for LexA, RegulonDB: STMS1H000242" /bound_moiety="LexA" regulatory 3374048..3374053 /regulatory_class="ribosome_binding_site" /gene="rpsU" /locus_tag="STM3209" /note="putative RBS for rpsU; RegulonDB:STMS1H003239" CDS 3374062..3374277 /gene="rpsU" /locus_tag="STM3209" /note="30S ribosomal protein S21. (SW:RS21_ECOLI)" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S21" /protein_id="NP_462124.1" /db_xref="GeneID:1254732" /translation="MPVIKVRENEPFDVALRRFKRSCEKAGVLAEVRRREFYEKPTTE RKRAKASAVKRHAKKLARENARRTRLY" misc_feature 3374062..3374247 /gene="rpsU" /locus_tag="STM3209" /note="Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]; Region: RpsU; COG0828" /db_xref="CDD:440590" gene 3374504..3376258 /gene="dnaG" /locus_tag="STM3210" /db_xref="GeneID:1254733" regulatory 3374504..3374509 /regulatory_class="ribosome_binding_site" /gene="dnaG" /locus_tag="STM3210" /note="putative RBS for dnaG; RegulonDB:STMS1H003240" CDS 3374513..3376258 /gene="dnaG" /locus_tag="STM3210" /EC_number="2.7.7.-" /note="DNA biosynthesis; DNA primase. (SW:PRIM_SALTY)" /codon_start=1 /transl_table=11 /product="DNA primase" /protein_id="NP_462125.1" /db_xref="GeneID:1254733" /translation="MAGRIPRVFINDLLARTDIVDLIDVRVKLKKQGKNYHACCPFHN EKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEIPYEAG TGLSQIERHQRQNLYQLMNGLNDFYQQSLTHPAAKPARDYLQKRGLSAEIIQRFAIGF APPGWDNALKRFGNNSDNKALLLDAGMLVNNEQGSTYDRFRNRVMFPIRDKRGRVIGF GGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQYSAEPQRLLVVEGYMDVVALAQY DINYAVASLGTSTTADHMHMLFRATNNVICCYDGDRAGRDAAWRALETAMPYMTDGRQ VRFMFLPDGEDPDTLVRKEGKAAFEARMEQAQPLSTFLFNSLLPQVDLSSPDGSTQLA ALALPLINQVPGDAHRIQLRQTLGLKLGIFDDSQLDRLVPKQAESGVSRPAPQLKRTT MRILIGLLVQNPDLAPLVPPLDALDQNKLPGLGLFKELVKTCLAQPGLTTGQLLELYR GTNDAATLEKLSMWDDIADKAIAEKTFTDSLNHMFDSLLQLRQEELIARDRTHGLSSE ERRELWTLNQELARK" misc_feature 3374522..3375796 /gene="dnaG" /locus_tag="STM3210" /note="DNA primase (bacterial type) [Replication, recombination and repair]; Region: DnaG; COG0358" /db_xref="CDD:440127" misc_feature 3375863..3376237 /gene="dnaG" /locus_tag="STM3210" /note="DNA primase DnaG DnaB-binding; Region: DnaG_DnaB_bind; smart00766" /db_xref="CDD:197866" gene 3376224..3378255 /gene="rpoD" /locus_tag="STM3211" /db_xref="GeneID:1254734" regulatory 3376224..3376232 /regulatory_class="minus_35_signal" /gene="dnaG" /locus_tag="STM3210" /note="putative -35_signal for rpoD; RegulonDB:STMLTH004582" regulatory 3376249..3376257 /regulatory_class="minus_10_signal" /gene="dnaG" /locus_tag="STM3210" /note="putative -10_signal for rpoD; RegulonDB:STMLTH004582" CDS 3376273..3378255 /gene="rpoD" /locus_tag="STM3211" /note="major sigma factor during exponential growth; RNA polymerase sigma factor PROD (SIGMA-70). (SW:RPSD_SALTY); sigma D factor of RNA polymerase" /codon_start=1 /transl_table=11 /product="sigma 70" /protein_id="NP_462126.3" /db_xref="GeneID:1254734" /translation="MPHIDREAPDSRSERQRPKYKYALALNVDSYTVDTNQTNKCGYR LMEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVME EAPDADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTR EGEIDIAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAE EEMAPTATHVGSELSQEDLDDDEDEDEEDGDDDAADDDNSIDPELAREKFAELRAQYV VTRDTIKAKGRSHAAAQEEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLI MKLCVEQCKMPKKNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVAEEVQRCLQKLR QIEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLD LIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETIN KLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHL GDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVG KQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLDD" misc_feature 3376408..3378252 /gene="rpoD" /locus_tag="STM3211" /note="RNA polymerase sigma factor RpoD; Validated; Region: PRK05658" /db_xref="CDD:235549" gene complement(3378379..3378896) /gene="mug" /locus_tag="STM3212" /db_xref="GeneID:1254735" CDS complement(3378379..3378885) /gene="mug" /locus_tag="STM3212" /EC_number="3.2.2.-" /note="similar to E. coli orf, hypothetical protein (AAC76104.1); Blastp hit to AAC76104.1 (168 aa), 80% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="G/U mismatch specific DNA glycosylase" /protein_id="NP_462127.1" /db_xref="GeneID:1254735" /translation="MVKDILAPGLRVVFCGINPGLSSANTGFPFAHPANRFWKVIHLA GFTDRQLKPEEAEKLLDFRCGVTKLVDRPTVQATEVKLHELRSGGRNLIEKIEDYQPA ALAVLGKQAFEQGFSQRGIAWGKQKIAIGATMVWVLPNPSGLNRIKTEKLVEAYRELD QALIMRGL" misc_feature complement(3378382..3378885) /gene="mug" /locus_tag="STM3212" /note="G/U mismatch-specific DNA glycosylase; Region: PRK10201" /db_xref="CDD:182301" misc_feature complement(3378826..3378840) /gene="mug" /locus_tag="STM3212" /note="motif A [structural motif]; Region: motif A" /db_xref="CDD:381679" misc_feature complement(order(3378448..3378462,3378466..3378471, 3378517..3378519,3378556..3378564,3378781..3378789, 3378826..3378828,3378832..3378837)) /gene="mug" /locus_tag="STM3212" /note="active site" /db_xref="CDD:381679" misc_feature complement(order(3378415..3378417,3378424..3378429, 3378757..3378762)) /gene="mug" /locus_tag="STM3212" /note="SUMO-1 interface [polypeptide binding]; other site" /db_xref="CDD:381679" regulatory complement(3378891..3378896) /regulatory_class="ribosome_binding_site" /gene="mug" /locus_tag="STM3212" /note="putative RBS for mug; RegulonDB:STMS1H003241" gene 3379011..3379083 /gene="ileX" /locus_tag="STM3213" /db_xref="GeneID:1254736" tRNA 3379011..3379083 /gene="ileX" /locus_tag="STM3213" /product="tRNA-Ile" /db_xref="GeneID:1254736" gene complement(3379166..3379943) /gene="yqjH" /locus_tag="STM3214" /db_xref="GeneID:1254737" CDS complement(3379166..3379933) /gene="yqjH" /locus_tag="STM3214" /note="similar to E. coli orf, hypothetical protein (AAC76105.1); Blastp hit to AAC76105.1 (254 aa), 72% identity in aa 6 - 254" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_462128.1" /db_xref="GeneID:1254737" /translation="MTTSSVRYPQRVRNELRFRELIVLRVERISAGFQRIVLGGEALD GFISLGFDDHTKVFFPEPGCRFTPPTVTEEGIIWGEGVRPVSRDYTPLYDEARRELAL DFFIHDGGVASRWAMEAREGDTLTIGGPRGSLVVPEEYACQVYVCDESGMPALRRRLE SLSRLPVRPAVTALVSIQDAAYRDYLAHLTDITVEYVVGGDEQAMQTRLSQLTIPESD YFIWITGEGKTVKRLSQCFEKGFDPHLVRAAAYWHRK" misc_feature complement(3379169..3379933) /gene="yqjH" /locus_tag="STM3214" /note="NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains [Inorganic ion transport and metabolism]; Region: ViuB; COG2375" /db_xref="CDD:441942" regulatory complement(3379938..3379943) /regulatory_class="ribosome_binding_site" /gene="yqjH" /locus_tag="STM3214" /note="putative RBS for yqjH; RegulonDB:STMS1H003242" gene 3380156..3380812 /gene="yqjI" /locus_tag="STM3215" /db_xref="GeneID:1254738" regulatory 3380156..3380161 /regulatory_class="ribosome_binding_site" /gene="yqjI" /locus_tag="STM3215" /note="putative RBS for yqjI; RegulonDB:STMS1H003243" CDS 3380165..3380812 /gene="yqjI" /locus_tag="STM3215" /note="similar to E. coli orf, hypothetical protein (AAC76106.1); Blastp hit to AAC76106.1 (207 aa), 68% identity in aa 1 - 207" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_462129.1" /db_xref="GeneID:1254738" /translation="MMQNQHEGCCKNRDHMHDGCCKDREHQHEGCHSAHQHENASCGG EHRHGHGCGRHGQGGGRRQRFFGHGELRLVILDILTRDASHGYELIKAIENLTGGGYT PSAGVIYPTLDFLQDQQFITISDEEGGRKKIAITANGAQWLDENREHLTHIQARLKAR CVGMELRKNPQMKRALDNFKAVLDLRINHSDINDAQIKRIIGVIDRAALEIAELD" misc_feature 3380366..3380641 /gene="yqjI" /locus_tag="STM3215" /note="DNA-binding transcriptional regulator, PadR family [Transcription]; Region: PadR; COG1695" /db_xref="CDD:441301" gene complement(3380809..3382380) /locus_tag="STM3216" /db_xref="GeneID:1254739" CDS complement(3380809..3382374) /locus_tag="STM3216" /note="similar to E. coli methyl-accepting chemotaxis protein I, serine sensor receptor (AAC77311.1); Blastp hit to AAC77311.1 (551 aa), 36% identity in aa 2 - 523" /codon_start=1 /transl_table=11 /product="putative methyl-accepting chemotaxis protein" /protein_id="NP_462130.1" /db_xref="GeneID:1254739" /translation="MFLHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNI ITNDYPTTVKANLLIDNFNDFIIAQQLMLLDEEGRWSQSSQKELDEISQRITALLDEL SSNRHDAASQKIITEIREARQQYLESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYK DKVQELIAVQDAQMHNAGVQVEGDFKTNRTLLITLALISIAAGCVMGWYIVRSITRPL DEAVRFAEAIADGDLTRHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTA AAQIVAGNQDLAARTEEQASSVEETAASMEQITATVKNTADHTSEATKLSAGAASVVK NNGEMMNQVTQKMRVINDTANRMSDIINIIDSIAFQTNILALNAAVEAARAGEHGRGF AVVAGEVRQLAQKSASSASEIRNLIEDSTSQTQEGMHLVEKASALINGMVDNVEEMDV ILREIGQASREQTDGISQINSAIGLIDAATQQNSCLVEESVAAAASLNEQALHLKELV NVFRVREEDTQPA" misc_feature complement(3380836..3382368) /locus_tag="STM3216" /note="Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cl46910" /db_xref="CDD:481250" misc_feature complement(order(3380905..3380910,3380917..3380919, 3380926..3380931,3380938..3380940,3380947..3380952, 3380956..3380961,3380968..3380973,3380977..3380982, 3380989..3380991,3380998..3381003,3381010..3381012, 3381019..3381024,3381031..3381036,3381040..3381045, 3381052..3381054,3381061..3381066,3381073..3381075, 3381082..3381087,3381124..3381129,3381136..3381141, 3381145..3381150,3381157..3381162,3381169..3381171, 3381178..3381183,3381190..3381192,3381199..3381201, 3381211..3381213,3381232..3381234,3381241..3381243, 3381253..3381255,3381262..3381267,3381274..3381276, 3381283..3381285,3381292..3381297,3381304..3381309, 3381316..3381318,3381325..3381330,3381334..3381336, 3381346..3381351,3381355..3381360,3381367..3381369, 3381376..3381381,3381388..3381393,3381400..3381402, 3381409..3381414,3381421..3381423,3381430..3381435, 3381439..3381444,3381451..3381453,3381460..3381465, 3381472..3381477)) /locus_tag="STM3216" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature complement(3381166..3381267) /locus_tag="STM3216" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" regulatory complement(3382375..3382380) /regulatory_class="ribosome_binding_site" /locus_tag="STM3216" /note="putative RBS for STM3216; RegulonDB:STMS1H003244" gene complement(3382762..3384294) /gene="aer" /locus_tag="STM3217" /db_xref="GeneID:1254740" CDS complement(3382762..3384282) /gene="aer" /locus_tag="STM3217" /note="senses cellular redox state or proton motive force; similar to E. coli aerotaxis sensor receptor, flavoprotein (AAC76107.1); Blastp hit to AAC76107.1 (506 aa), 83% identity in aa 1 - 506" /codon_start=1 /transl_table=11 /product="aerotaxis sensor receptor" /protein_id="NP_462131.1" /db_xref="GeneID:1254740" /translation="MSSHPYVSQLNTPLDDDTTLMSTTDLESYITHANDTFVQVSGYQ LNELLAQPHNLVRHPDMPKAAFADMWYTLKQGEPWSGIVKNRRKNGDHYWVRANAVPM IREGRVTGYMSIRTRATDDEVAAVEPLYQALNEGRCSKRIHKGLVVRQGLLGKLPAMP VRWRVRSIMGLMAVMLALALFGTDASWQALLLGALAMLAGTALLEWQIVRPIENVATQ ALKVATGERNSVQHLNRSDELGLTLRAVGQLGLMCRWLINDVSSQVSSVRNGSERLAK GNNDLNEHTRQTVENVQETVTTMNQMAESVKLNSETASAADKLSMAASSAATQGGEAM DTVIKTMDDIAHSTQRIGTITTLINDIAFQTNILALNAAVEAARAGEQGKGFAVVAGE VRHLASRSANAANDIRKLIDASATKVQSGSEQVHAAGRTMDDIVAQVQNVTLLIARIS QSTQEQTDGLSSLTRAVDELNRITQKNAALVEESAQVSAMVKHRASRLEDAVTVLH" misc_feature complement(<3383935..3384243) /gene="aer" /locus_tag="STM3217" /note="PAS domain [Signal transduction mechanisms]; Region: PAS; COG2202" /db_xref="CDD:441804" misc_feature complement(3382765..>3383547) /gene="aer" /locus_tag="STM3217" /note="Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cl46910" /db_xref="CDD:481250" misc_feature complement(order(3382831..3382836,3382843..3382845, 3382852..3382857,3382864..3382866,3382873..3382878, 3382882..3382887,3382894..3382899,3382903..3382908, 3382915..3382917,3382924..3382929,3382936..3382938, 3382945..3382950,3382957..3382962,3382966..3382971, 3382978..3382980,3382987..3382992,3382999..3383001, 3383008..3383013,3383050..3383055,3383062..3383067, 3383071..3383076,3383083..3383088,3383095..3383097, 3383104..3383109,3383116..3383118,3383125..3383127, 3383137..3383139,3383158..3383160,3383167..3383169, 3383179..3383181,3383188..3383193,3383200..3383202, 3383209..3383211,3383218..3383223,3383230..3383235, 3383242..3383244,3383251..3383256,3383260..3383262, 3383272..3383277,3383281..3383286,3383293..3383295, 3383302..3383307,3383314..3383319,3383326..3383328, 3383335..3383340,3383347..3383349,3383356..3383361, 3383365..3383370,3383377..3383379,3383386..3383391, 3383398..3383403)) /gene="aer" /locus_tag="STM3217" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature complement(3383092..3383193) /gene="aer" /locus_tag="STM3217" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" regulatory complement(3384289..3384294) /regulatory_class="ribosome_binding_site" /gene="aer" /locus_tag="STM3217" /note="putative RBS for aer; RegulonDB:STMS1H003245" gene 3384796..3386091 /gene="oat" /locus_tag="STM3218" /db_xref="GeneID:1254741" regulatory 3384796..3384801 /regulatory_class="ribosome_binding_site" /gene="oat" /locus_tag="STM3218" /note="putative RBS for oat; RegulonDB:STMS1H003246" CDS 3384802..3386091 /gene="oat" /locus_tag="STM3218" /EC_number="2.6.1.13" /note="similar to E. coli probable ornithine aminotransferase (AAC76108.1); Blastp hit to AAC76108.1 (496 aa), 94% identity in aa 68 - 495" /codon_start=1 /transl_table=11 /product="putative acetylornithine aminotransferase" /protein_id="NP_462132.3" /db_xref="GeneID:1254741" /translation="MKALNREVIDYFKEHVNPGFLEYRKSVTAGGDYGAVEWQAGSLN TLVDTQGQEFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQPLHSQELLDPLRAMLAKT LAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSPRGKFTFIATSGAFHGKSLGALSA TAKSTFRRPFMPLLPGFRHVPFGNIDAMSMAFSEGKKTGDEIAAVILEPIQGEGGVIL PPQGYLTEVRKLCDEFGALMILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGV MPIGATIATEEVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGD TLLDGFRQLAREYPNLVHDARGKGMLMAIEFVDNETGYRFASEMFRQRVLVAGTLNNA KTIRIEPPLTLTIELCEQVLKSARNALAAMQVSVEEV" misc_feature 3384802..3386088 /gene="oat" /locus_tag="STM3218" /note="putrescine--2-oxoglutarate aminotransferase; Provisional; Region: PRK11522" /db_xref="CDD:183175" misc_feature order(3385156..3385164,3385249..3385254,3385258..3385260, 3385423..3385425,3385522..3385524,3385528..3385533, 3385609..3385611) /gene="oat" /locus_tag="STM3218" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99735" misc_feature order(3385159..3385164,3385249..3385254,3385423..3385425, 3385522..3385524,3385531..3385533,3385609..3385611) /gene="oat" /locus_tag="STM3218" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature 3385609..3385611 /gene="oat" /locus_tag="STM3218" /note="catalytic residue [active]" /db_xref="CDD:99735" gene 3386250..3388280 /gene="fadH" /locus_tag="STM3219" /db_xref="GeneID:1254742" regulatory 3386250..3386255 /regulatory_class="ribosome_binding_site" /gene="fadH" /locus_tag="STM3219" /note="putative RBS for fadH; RegulonDB:STMS1H003247" CDS 3386262..3388280 /gene="fadH" /locus_tag="STM3219" /EC_number="1.3.1.34" /note="similar to E. coli putative NADPH dehydrogenase (AAC76116.1); Blastp hit to AAC76116.1 (672 aa), 85% identity in aa 1 - 672" /codon_start=1 /transl_table=11 /product="2,4-dieonyl-coa reductase" /protein_id="NP_462133.1" /db_xref="GeneID:1254742" /translation="MSYPSLFAPLDLGFTTLRNRVLMGSMHTGLEEHPDGAERLAAFY AERARHGVALIVTGGIAPVPSGVVMTGGAMLNDASQLTPHRVVTDAVHAQGGKIALQI LHTGRYSYQPHLVAPSAIQAPINRFMPHELTHDEILQLIDDFAHCAQLAREAGYDGVE VMGSEGYLINEFLTRRTNHRDDEWGGDYASRMRFAVEVVRAVRQRVGNDFIIIYRLSM LDLVENGGTFDETVQLAQAIEAAGASLINTGIGWHEARIPTIATPVPRGAFSWVTRKL KGHVSVPLIATNRINDPQVAETILTRGDADMVSMARPFLADAEFLTKAQSGRADEINT CIGCNQACLDRIFIGKVTSCLVNPRACHETHMPITPAIRKKNLAVVGAGPAGLAFAIN AASRGHHVTLFDAQSEIGGQFTIARQIPGKEEFYETLRYYRRMIDVTGVTLKLNQRVN AEDLQPFDEAILACGIVPRRPPIDGIDHPKALTYLEVLRDKAPVGKRVAIIGCGGIGF DTAMYLSQHGESTSQNIAEFCTEWGIDTSLQQAGGLRPEGPRLARSPRQIVMLQRKTS KPGEGLGKTTGWIHRATLLARGVKMIPAVSYQKIDDDGLHLLIGGEPQLLEVDHVVIC AGQEPRRELADPLRAAGKTVHLIGGCDVAMELDARRAIAQGTRLALEI" misc_feature 3386277..3387335 /gene="fadH" /locus_tag="STM3219" /note="2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the...; Region: DCR_FMN; cd02930" /db_xref="CDD:239240" misc_feature order(3386334..3386336,3386340..3386342,3386436..3386438, 3386562..3386564,3386754..3386756,3386760..3386762, 3386787..3386789,3386904..3386906,3387018..3387020, 3387027..3387029,3387192..3387197,3387264..3387266, 3387273..3387275,3387285..3387287,3387321..3387323) /gene="fadH" /locus_tag="STM3219" /note="active site" /db_xref="CDD:239240" misc_feature order(3386334..3386336,3386340..3386342,3386436..3386438, 3386562..3386564,3386904..3386906,3387192..3387197) /gene="fadH" /locus_tag="STM3219" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:239240" misc_feature order(3386754..3386756,3386760..3386762,3386787..3386789, 3387018..3387020,3387027..3387029) /gene="fadH" /locus_tag="STM3219" /note="2,4-decadienoyl-CoA binding site; other site" /db_xref="CDD:239240" misc_feature 3386760..3386762 /gene="fadH" /locus_tag="STM3219" /note="catalytic residue [active]" /db_xref="CDD:239240" misc_feature order(3387264..3387266,3387273..3387275,3387285..3387287, 3387321..3387323) /gene="fadH" /locus_tag="STM3219" /note="4Fe-4S cluster binding site [ion binding]; other site" /db_xref="CDD:239240" misc_feature <3387360..>3387797 /gene="fadH" /locus_tag="STM3219" /note="NADPH-dependent glutamate synthase beta chain or related oxidoreductase [Amino acid transport and metabolism, General function prediction only]; Region: GltD; COG0493" /db_xref="CDD:440259" misc_feature 3387459..>3388217 /gene="fadH" /locus_tag="STM3219" /note="NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase, or a related oxidoreductase [Lipid transport and metabolism]; Region: FadH2; COG0446" /db_xref="CDD:440215" gene complement(3388361..3389508) /gene="ygjO" /locus_tag="STM3220" /db_xref="GeneID:1254743" CDS complement(3388361..3389497) /gene="ygjO" /locus_tag="STM3220" /note="similar to E. coli putative enzyme (AAC76119.1); Blastp hit to AAC76119.1 (388 aa), 90% identity in aa 11 - 388" /codon_start=1 /transl_table=11 /product="putative methyltransferase" /protein_id="NP_462134.1" /db_xref="GeneID:1254743" /translation="MSHVDDGFRSLTLKRFPQTDDVNPLLAWEAADEYLLQQLDETEI RGPVLILNDTFGALSCALAEHSPYSIGDSYLSELGTRENLRHNGIAESSVTFLDSTAD YPQAPGVVLIKVPKTLALLEQQLRALRKVVTAQTRIIAGAKARDIHTSTLELFEKVLG PTTTTLAWKKARLINCTFSHPQLADAPQTLSWKLEDTGWTIHNHANVFSRTGLDIGAR FFMQHLPENLDGEIVDLGCGNGVIGLSLLAKNPQANVVFVDESPMAVDSSRLNVETNL PEAFERCEFMINNALSGVEPFRFNAVFCNPPFHQKHALTDNIAWEMFHHARRCLKING ELYIVANRHLDYFHKLKKIFGNCATIATNNKFVILKAVKQGRRR" misc_feature complement(3388364..3389497) /gene="ygjO" /locus_tag="STM3220" /note="23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG; Region: PRK15001" /db_xref="CDD:184963" regulatory complement(3389503..3389508) /regulatory_class="ribosome_binding_site" /gene="ygjO" /locus_tag="STM3220" /note="putative RBS for ygjO; RegulonDB:STMS1H003248" gene 3389572..3390080 /gene="ygjP" /locus_tag="STM3221" /db_xref="GeneID:1254744" regulatory 3389572..3389577 /regulatory_class="ribosome_binding_site" /gene="ygjP" /locus_tag="STM3221" /note="putative RBS for ygjP; RegulonDB:STMS1H003249" CDS 3389583..3390080 /gene="ygjP" /locus_tag="STM3221" /note="similar to E. coli orf, hypothetical protein (AAC76120.1); Blastp hit to AAC76120.1 (179 aa), 88% identity in aa 13 - 174" /codon_start=1 /transl_table=11 /product="putative metal-dependent hydrolase" /protein_id="NP_462135.1" /db_xref="GeneID:1254744" /translation="MTSLTYLQGYPEHLLAQVRALIAEQRLGAVLEKRYPGAHDYATD KALYHYTQELKSQFLRNAPPINKVMYDSKIHVLKNALGLHTAVSRVQGGKLKAKAEIR VATVFRNAPEPFLRMIVVHELAHLKEKDHNKAFYQLCCHMEPQYHQLEFDTRLWLTHQ ALSAQ" misc_feature <3389910..3390032 /gene="ygjP" /locus_tag="STM3221" /note="Peptidase M48 YhfN-like, a novel minigluzincin; Region: M48_yhfN_like; cd07344" /db_xref="CDD:320703" misc_feature order(3389943..3389948,3389955..3389957,3389973..3389975) /gene="ygjP" /locus_tag="STM3221" /note="active site" /db_xref="CDD:320703" misc_feature order(3389943..3389945,3389955..3389957,3389973..3389975) /gene="ygjP" /locus_tag="STM3221" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:320703" gene 3390213..3390924 /gene="ygjQ" /locus_tag="STM3222" /db_xref="GeneID:1254745" regulatory 3390213..3390218 /regulatory_class="ribosome_binding_site" /gene="ygjQ" /locus_tag="STM3222" /note="putative RBS for ygjQ; RegulonDB:STMS1H003250" CDS 3390232..3390924 /gene="ygjQ" /locus_tag="STM3222" /note="similar to E. coli orf, hypothetical protein (AAC76121.1); Blastp hit to AAC76121.1 (230 aa), 73% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_462136.1" /db_xref="GeneID:1254745" /translation="MLSQCARFIRRLCFTRRALTVACFLLVAAGVALFYSNWLIVNAS QHLTWNDIQTVPARNVGLVLGAKPGNRYFTRRINTAAALYHAGKVKWLLVSGDNGKKE YDEPSAMQQALMAKGVPEAAIFCDYAGFSTLDSVVRARKVFGESRITIISQAFHNQRA IWLAQQYGIDAIGVNAPDLNKRHGTYTRLREKLARVSAVLDAKILHRQPKYLGAGVTI GADSAHGCPSRQ" misc_feature 3390271..3390885 /gene="ygjQ" /locus_tag="STM3222" /note="Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin [Cell wall/membrane/envelope biogenesis]; Region: SanA; COG2949" /db_xref="CDD:442192" gene 3390994..3392011 /gene="ygjR" /locus_tag="STM3223" /db_xref="GeneID:1254746" regulatory 3390994..3390999 /regulatory_class="ribosome_binding_site" /gene="ygjR" /locus_tag="STM3223" /note="putative RBS for ygjR; RegulonDB:STMS1H003251" CDS 3391013..3392011 /gene="ygjR" /locus_tag="STM3223" /note="similar to E. coli orf, hypothetical protein (AAC76122.1); Blastp hit to AAC76122.1 (334 aa), 83% identity in aa 7 - 332" /codon_start=1 /transl_table=11 /product="putative dehydrogenase" /protein_id="NP_462137.1" /db_xref="GeneID:1254746" /translation="MIRFAVIGTNWITRQFVDAAHETGKFRLAAVYSRSLEQAQSFAN DYPVEHLFTSLEAMAQSDAIEAVYIASPNSLHFSQTQRFLQHKKHVMCEKPLASNLAE VDAAIACARDNQRVLFEAFKTACLPNFLLLRESLPKIGRMHKALLNYCQYSSRYQRYL NGENPNTFNPAFSNGSIMDIGYYCLASAIALWGEPRSVQASANLLESGVDAHGVVVMD YGDFSVTLQHSKVSDSVLASEIQGERGSLVIEKLSECQKVCFAPRGALMQDLTQPQHI NTMLYEAGAFAQLIENHAVEHPGLSLSRATAKWLTEIRRQTGVIFPADDLTHPLTA" misc_feature 3391013..3391762 /gene="ygjR" /locus_tag="STM3223" /note="Predicted dehydrogenase [General function prediction only]; Region: MviM; COG0673" /db_xref="CDD:440437" gene 3392272..3393252 /gene="ygjT" /locus_tag="STM3224" /db_xref="GeneID:1254747" regulatory 3392272..3392277 /regulatory_class="ribosome_binding_site" /gene="ygjT" /locus_tag="STM3224" /note="putative RBS for ygjT; RegulonDB:STMS1H003252" CDS 3392284..3393252 /gene="ygjT" /locus_tag="STM3224" /note="similar to E. coli putative transport protein (AAC76123.1); Blastp hit to AAC76123.1 (321 aa), 87% identity in aa 1 - 318" /codon_start=1 /transl_table=11 /product="putative resistance protein" /protein_id="NP_462138.1" /db_xref="GeneID:1254747" /translation="MNTVGTPLLWGGFAVVVVIMLSIDLLLQGRRGAHAMSMKQAAGW SILWVTLSLLFNAAFWWYLAETQGREVADPQALAFLTGYLIEKSLAVDNVFVWLMLFS YFSVPPALQRRVLVYGVLGAIVLRTIMIFAGTWLITQFEWLLYVFGAFLLFTGVKMAL AKEDESGIGEKPMVRWLRGHLRMTDTIENEHFFVRKNGLLYATPLLLVLIMVEFSDVI FAVDSIPAIFAVTTDPFIVLTSNLFAILGLRAMYFLLSGVAERFSMLKYGLAVILVFI GIKMLIVDFYHIPIAISLGVVFGILTITLVINAWVNHQRDKKLRAQ" misc_feature 3392299..3393219 /gene="ygjT" /locus_tag="STM3224" /note="integral membrane protein, TerC family; Region: R_switched_Alx; TIGR03718" /db_xref="CDD:274743" gene 3393495..3394751 /gene="ygjU" /locus_tag="STM3225" /db_xref="GeneID:1254748" regulatory 3393495..3393500 /regulatory_class="ribosome_binding_site" /gene="ygjU" /locus_tag="STM3225" /note="putative RBS for ygjU; RegulonDB:STMS1H003253" CDS 3393507..3394751 /gene="ygjU" /locus_tag="STM3225" /note="similar to E. coli putative transport protein (AAC76124.1); Blastp hit to AAC76124.1 (414 aa), 93% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="putative dicarboxylate permease" /protein_id="NP_462139.1" /db_xref="GeneID:1254748" /translation="MATQRASGLLQRLAQGSLVKQILVGLVLGILLAWISKPAAEAVG LLGTLFVGALKAVAPVLVLMLVMASIANHQHGQKTNIRPILFLYLLGTFSAALAAVVF SFAFPSTLHLSSSAQDIVPPSGIVEVLRGLLMSMVSNPIDALLNANYIGILVWAVGLG FALRHGNETTKNLVNDMSNAVTFMVKLVIRFAPVGIFGLVSSTLATTGFSTLWGYAHL LVVLIGCMLLVALVVNPLLVFWKIRRNPYPLVFACLRESGVYAFFTRSSAANIPVNMA LCEKLNLDRDTYSVSIPLGATINMAGAAITITVLTLAAVHTLGVPVDLPTALLLSVVA SLCACGASGVAGGSLLLIPLACNMFGIPNDIAMQVVAVGFIIGVLQDSCETALNSSTD VLFTAAACQAEDERLANNALRS" misc_feature 3393513..3394718 /gene="ygjU" /locus_tag="STM3225" /note="serine/threonine transporter SstT; Provisional; Region: PRK13628" /db_xref="CDD:184190" gene 3395189..3395863 /gene="yqjA" /locus_tag="STM3226" /db_xref="GeneID:1254749" regulatory 3395189..3395194 /regulatory_class="ribosome_binding_site" /gene="yqjA" /locus_tag="STM3226" /note="putative RBS for yqjA; RegulonDB:STMS1H003254" CDS 3395201..3395863 /gene="yqjA" /locus_tag="STM3226" /note="similar to E. coli orf, hypothetical protein (AAC76130.1); Blastp hit to AAC76130.1 (220 aa), 95% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="putative DedA family membrane protein" /protein_id="NP_462140.1" /db_xref="GeneID:1254749" /translation="MELLTQLLNALWAQDFETLANPSMIGMLYFVLFMILFLENGLLP AAFLPGDSLLILVGVLIAKGAMGYPQTILLLTVAASLGCWVSYIQGRWLGNTRTVQNW LSHLPAHYHQRAHHLFHKHGLSALLIGRFIAFVRTLLPTIAGISGLNNARFQFFNWMS GLLWVLILTSLGYLLGKTPVFMKYEDQLMSCLMLLPVVLLFFGLAGSLVMLWKKKYGS RG" misc_feature 3395270..3395845 /gene="yqjA" /locus_tag="STM3226" /note="Membrane integrity protein DedA, putative transporter, DedA/Tvp38 family [Cell wall/membrane/envelope biogenesis]; Region: DedA; COG0586" /db_xref="CDD:440351" gene 3395854..3396250 /gene="yqjB" /locus_tag="STM3227" /db_xref="GeneID:1254750" regulatory 3395854..3395859 /regulatory_class="ribosome_binding_site" /gene="yqjB" /locus_tag="STM3227" /note="putative RBS for yqjB; RegulonDB:STMS1H003255" CDS 3395867..3396250 /gene="yqjB" /locus_tag="STM3227" /note="similar to E. coli orf, hypothetical protein (AAC76131.1); Blastp hit to AAC76131.1 (127 aa), 68% identity in aa 4 - 127" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_462141.1" /db_xref="GeneID:1254750" /translation="MLKPRITARQLIWISAFLLMLTILMMTWSTLRQQESTLAIRAVN QGASMPDGFSVLHHLDANGIHFKSITPKNDMLLITFDSPAQSAAAKTVLDQTLPHGYV VAQQDDDNETVQWLSRLRESSHRFG" misc_feature 3395867..3396247 /gene="yqjB" /locus_tag="STM3227" /note="EnvZ/OmpR regulon moderator MzrA; Region: PRK10629" /db_xref="CDD:236728" gene 3396379..3396763 /gene="yqjC" /locus_tag="STM3228" /db_xref="GeneID:1254751" regulatory 3396379..3396384 /regulatory_class="ribosome_binding_site" /gene="yqjC" /locus_tag="STM3228" /note="putative RBS for yqjC; RegulonDB:STMS1H003256" CDS 3396395..3396763 /gene="yqjC" /locus_tag="STM3228" /note="similar to E. coli orf, hypothetical protein (AAC76132.1); Blastp hit to AAC76132.1 (127 aa), 84% identity in aa 6 - 127" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462142.1" /db_xref="GeneID:1254751" /translation="MKYRIALAITLFTLSAGSYANSLCQEKEQDIQKEISYAEKHNNQ RRIEGLNKALSEVRANCTDSKLRAEHQKKIAEQKEEVAERQRDLAEAKAKGDADKIDK RERKLAEAQDELKKLEARDY" misc_feature 3396416..3396742 /gene="yqjC" /locus_tag="STM3228" /note="Protein of unknown function (DUF1090); Region: DUF1090; pfam06476" /db_xref="CDD:428965" gene 3396793..3397110 /gene="yqjD" /locus_tag="STM3229" /db_xref="GeneID:1254752" regulatory 3396793..3396798 /regulatory_class="ribosome_binding_site" /gene="yqjD" /locus_tag="STM3229" /note="putative RBS for yqjD; RegulonDB:STMS1H003257" CDS 3396805..3397110 /gene="yqjD" /locus_tag="STM3229" /note="similar to E. coli orf, hypothetical protein (AAC76133.1); Blastp hit to AAC76133.1 (101 aa), 90% identity in aa 1 - 101" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462143.1" /db_xref="GeneID:1254752" /translation="MSKDNTTEHLRAELKSLTDTLEEVLSSSGEKSKEELSKIRSKAE RALKESRYRLGETGDVIAKQTRVAAARADDYVRENPWTGVGIGAAVGLVLGVLLTRR" misc_feature 3396808..3397107 /gene="yqjD" /locus_tag="STM3229" /note="Membrane-anchored ribosome-binding protein ElaB, inhibits growth in stationary phase, YqjD/DUF883 family [Translation, ribosomal structure and biogenesis]; Region: ElaB; COG4575" /db_xref="CDD:443632" gene 3397113..3397511 /gene="yqjE" /locus_tag="STM3230" /db_xref="GeneID:1254753" CDS 3397113..3397511 /gene="yqjE" /locus_tag="STM3230" /note="similar to E. coli orf, hypothetical protein (AAC76134.1); Blastp hit to AAC76134.1 (134 aa), 89% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462144.1" /db_xref="GeneID:1254753" /translation="MADSRQAQGPGKSVLGIGQRIVTIIVEMVETRLRLAVVELEEEK ANLFQLLLMVGLTMLFAAFGLMSLMVLVIWAIDPQYRLNAMIATTVVLLVLALIGGIW TLRKARQSTLLRHTRHELANDRQILEDDQS" misc_feature 3397122..3397505 /gene="yqjE" /locus_tag="STM3230" /note="Uncharacterized membrane protein YqjE [Function unknown]; Region: YqjE; COG5393" /db_xref="CDD:444153" gene 3397491..3397807 /gene="yqjK" /locus_tag="STM3231" /db_xref="GeneID:1254754" regulatory 3397491..3397496 /regulatory_class="ribosome_binding_site" /gene="yqjK" /locus_tag="STM3231" /note="putative RBS for yqjK; RegulonDB:STMS1H003258" CDS 3397508..3397807 /gene="yqjK" /locus_tag="STM3231" /note="similar to E. coli orf, hypothetical protein (AAC76135.1); Blastp hit to AAC76135.1 (99 aa), 87% identity in aa 1 - 99" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462145.1" /db_xref="GeneID:1254754" /translation="MSSKGEREKRKALLLSQIQQQRLDLSASRRDWLETTGAYDRGWN TVLSLRSWALVGSSVMAIWTIRHPNMLVRWAKRGLGIWSAWRLVKTTLRQQQLRG" misc_feature 3397547..3397762 /gene="yqjK" /locus_tag="STM3231" /note="YqjK-like protein; Region: YqjK; pfam13997" /db_xref="CDD:464063" gene 3397952..3398437 /gene="yqjF" /locus_tag="STM3232" /db_xref="GeneID:1254755" CDS 3397952..3398437 /gene="yqjF" /locus_tag="STM3232" /note="similar to E. coli orf, hypothetical protein (AAC76136.1); Blastp hit to AAC76136.1 (160 aa), 81% identity in aa 1 - 160" /codon_start=1 /transl_table=11 /product="putative membrane-associated protein" /protein_id="NP_462146.1" /db_xref="GeneID:1254755" /translation="MILSSDNNDAPNRVIAHENSSSRRIGPLENKMKKLEDVGVLIAR ILMPVLFITAGWGKISGYAGTQQYMEAMGVPGFLLPLTILLEFGGGLAILLGFLTRTT ALFTAGFTLLTALIFHSNFAEGVNSLMFMKNLTIAGGFLLLALTGPGAFSLDRLLNKK W" misc_feature 3398039..3398434 /gene="yqjF" /locus_tag="STM3232" /note="Uncharacterized membrane protein YphA, DoxX/SURF4 family [Function unknown]; Region: DoxX; COG2259" /db_xref="CDD:441860" gene 3398493..3399491 /gene="yqjG" /locus_tag="STM3233" /db_xref="GeneID:1254756" regulatory 3398493..3398498 /regulatory_class="ribosome_binding_site" /gene="yqjG" /locus_tag="STM3233" /note="putative RBS for yqjG; RegulonDB:STMS1H003259" CDS 3398505..3399491 /gene="yqjG" /locus_tag="STM3233" /note="similar to E. coli putative transferase (AAC76137.1); Blastp hit to AAC76137.1 (328 aa), 92% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="putative glutathione S-transferase" /protein_id="NP_462147.1" /db_xref="GeneID:1254756" /translation="MGQLIDGVWHDTWYDTKSSGGKFQRSASAFRNWLTADGAPGPSG EGGFAAEKDRYHLYVSLACPWAHRTLIFRKLKGLEPFIPVSVVNPLMLENGWTFDDTF PAATGDTLYQHEFLYQLYLHADPHYSGRVTVPVLWDKKNHTIVSNESAEIIRMFNSAF DGLGAKAGDYYPPALQSKIDELNGWIYDNVNNGVYKAGFATSQQAYDEAVDKVFTALA RLEQILGQHRYLTGDQLTEADIRLWTTLVRFDPVYVTHFKCDKYRISDYLNLYGFLRD IYQISGIAETVNMDHIRHHYFRSHKTINPTGIISVGPWQDLLEPHGRDVRFG" misc_feature 3398505..3399488 /gene="yqjG" /locus_tag="STM3233" /note="Glutathionyl-hydroquinone reductase [Energy production and conversion]; Region: ECM4; COG0435" /db_xref="CDD:440204" gene 3399606..3399980 /gene="yhaH" /locus_tag="STM3234" /db_xref="GeneID:1254757" regulatory 3399606..3399611 /regulatory_class="ribosome_binding_site" /gene="yhaH" /locus_tag="STM3234" /note="putative RBS for yhaH; RegulonDB:STMS1H003260" CDS 3399615..3399980 /gene="yhaH" /locus_tag="STM3234" /note="similar to E. coli putative cytochrome (AAC76138.1); Blastp hit to AAC76138.1 (121 aa), 89% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462148.1" /db_xref="GeneID:1254757" /translation="MDWYLKVLKNYLGFGGRARRKEYWMFILVNIIFTFVLGLLDAML GWQRAGGEGVLTTIYGVLIFLPWWAVQFRRLHDTDRSAWWLLLLLIPIIGWLIIIAFN CQNGTPGDNRFGPDPKRFS" misc_feature 3399618..3399968 /gene="yhaH" /locus_tag="STM3234" /note="Uncharacterized membrane protein YhaH, DUF805 family [Function unknown]; Region: yhaH; COG3152" /db_xref="CDD:442386" gene complement(3400019..3400924) /gene="yhaJ" /locus_tag="STM3235" /db_xref="GeneID:1254758" CDS complement(3400019..3400915) /gene="yhaJ" /locus_tag="STM3235" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC76140.1); Blastp hit to AAC76140.1 (298 aa), 96% identity in aa 1 - 298" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462149.1" /db_xref="GeneID:1254758" /translation="MAKERALTLEALRVMDAIDRRGSFAAAADELGRVPSALSYTMQK LEEELDVVLFDRSGHRTKFTNVGRMLLERGRVLLEAADKLTTDAEALARGWETHLTLV TEALVPTPAFFPLIDRLAAKANTQLSLITEVLAGAWERLEQGRADIVIAPDMHFRSSS EINSRKLYTLMNVYVAAPDHPIHQEPEPLSEVTRVKYRGVAVADTARERPVLTVQLLD KQPRLTVSTIEDKRQALLAGLGVATMPYSMVEQDIAEGRLRVVSPESTSEIDIIMAWR RDSMGEAKAWCLREIPKLFAGK" misc_feature complement(3400712..3400891) /gene="yhaJ" /locus_tag="STM3235" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature complement(3400043..3400621) /gene="yhaJ" /locus_tag="STM3235" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" misc_feature complement(order(3400205..3400210,3400214..3400219, 3400235..3400252,3400523..3400543,3400544..3400546, 3400556..3400558,3400565..3400570,3400574..3400579)) /gene="yhaJ" /locus_tag="STM3235" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176102" regulatory complement(3400919..3400924) /regulatory_class="ribosome_binding_site" /gene="yhaJ" /locus_tag="STM3235" /note="putative RBS for yhaJ; RegulonDB:STMS1H003261" gene 3401007..3401721 /gene="yhaK" /locus_tag="STM3236" /db_xref="GeneID:1254759" regulatory 3401007..3401012 /regulatory_class="ribosome_binding_site" /gene="yhaK" /locus_tag="STM3236" /note="putative RBS for yhaK; RegulonDB:STMS1H003262" CDS 3401020..3401721 /gene="yhaK" /locus_tag="STM3236" /note="similar to E. coli orf, hypothetical protein (AAC76141.1); Blastp hit to AAC76141.1 (233 aa), 84% identity in aa 1 - 233" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462150.1" /db_xref="GeneID:1254759" /translation="MITTRTAKQCGQADYGWLQARYTFSFGHYFDPTLLGYASLRVLN QEVLAPGASFQPRTYPKVDILNLILDGEAEYRDSDGNHVQAKAGEALLLAAQPGISYS EHNISKVKPLTRMQLWLDACPERENTLVQKIPLLAAQQQLLASPDGEQNSLQLRQQVW VHHITLEKGESLNFQLHGPRAYLQSIHGTFHAMTHNEEREALTCGDGAFIRDEPNITL VADTPLRALLVDLPV" misc_feature 3401068..3401403 /gene="yhaK" /locus_tag="STM3236" /note="RmlC-like cupin superfamily; Region: cupin_RmlC-like; cl40423" /db_xref="CDD:477354" misc_feature 3401494..3401715 /gene="yhaK" /locus_tag="STM3236" /note="Escherichia coli YhhW and YhaK and related proteins, pirin-like bicupin, C-terminal cupin domain; Region: cupin_Yhhw_C; cd20311" /db_xref="CDD:380445" misc_feature order(3401500..3401502,3401563..3401565,3401569..3401577, 3401584..3401586,3401626..3401631,3401638..3401640, 3401644..3401646,3401692..3401694,3401698..3401700, 3401704..3401706,3401710..3401715) /gene="yhaK" /locus_tag="STM3236" /note="intramolecular domain interface [polypeptide binding]; other site" /db_xref="CDD:380445" gene 3401732..3401909 /gene="yhaL" /locus_tag="STM3237" /db_xref="GeneID:1254760" regulatory 3401732..3401737 /regulatory_class="ribosome_binding_site" /gene="yhaL" /locus_tag="STM3237" /note="putative RBS for yhaL; RegulonDB:STMS1H003263" CDS 3401745..3401909 /gene="yhaL" /locus_tag="STM3237" /note="similar to E. coli orf, hypothetical protein (AAC76142.1); Blastp hit to AAC76142.1 (56 aa), 70% identity in aa 3 - 56" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462151.1" /db_xref="GeneID:1254760" /translation="MSKKSAKKRQPVVKPAVQEAMSAAVPLGYEEMLTELEAIVADAE ARLAEEEAAA" gene complement(3402022..3403344) /gene="yhaN" /locus_tag="STM3238" /db_xref="GeneID:1254761" CDS complement(3402022..3403332) /gene="yhaN" /locus_tag="STM3238" /note="similar to E. coli orf, hypothetical protein (AAC76143.1); Blastp hit to AAC76143.1 (188 aa), 92% identity in aa 1 - 187" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462152.1" /db_xref="GeneID:1254761" /translation="MFESKINPLWQSFILAVQEEVKPALGCTEPISLALAAAAAAAEL NGTVERIDAWVSPNLMKNGMGVTVPGTGMVGLPIAAALGALGGDAKAGLEVLKDASAK AVADAKAMLAAGHVAVMLQEPCNDILFSRAKVYSGDSWACVTIVGDHTNIVRIETDKG VVFTQADNAQEEEKTSPLGVLSHTSLEEILAFVNAVPFDAIRFILDAARLNGALSQEG LRGSWGLHIGSTLAKQCDRGLLAKDLSTAILIRTSAASDARMGGATLPAMSNSGSGNQ GITATVPVMVVAEHVGADDERLARALMLSHLSAIYIHHQLPRLSALCAATTAAMGAAA GMAWLIDGRYDTIAMAISSMIGDVSGMICDGASNSCAMKVSTSASAAWKAVLMALDDT AVTGNEGIVAHNVEQSISNLCSLACRSMQQTDKQIIEIMASKAH" misc_feature complement(3402028..3403314) /gene="yhaN" /locus_tag="STM3238" /note="L-cysteine desulfidase YhaM [Amino acid transport and metabolism]; Region: CdsB; COG3681" /db_xref="CDD:442897" regulatory complement(3403339..3403344) /regulatory_class="ribosome_binding_site" /gene="yhaN" /locus_tag="STM3238" /note="putative RBS for yhaN; RegulonDB:STMS1H003264" gene complement(3403358..3404698) /gene="yhaO" /locus_tag="STM3239" /db_xref="GeneID:1254762" CDS complement(3403358..3404689) /gene="yhaO" /locus_tag="STM3239" /note="similar to E. coli putative transport system permease protein (AAC76145.1); Blastp hit to AAC76145.1 (425 aa), 97% identity in aa 3 - 425" /codon_start=1 /transl_table=11 /product="putative HAAAP family transport protein" /protein_id="NP_462153.1" /db_xref="GeneID:1254762" /translation="MESASNTSVILDASAPARRAGMTESEWREAIKFDSTDTGWVIMS IGMAIGAGIVFLPVQVGLMGLWVFLLSSIIGYPAMYLFQRLFINTLAESPECKDYPSV ISGYLGKNWGILLGALYFVMLVIWMFVYSTAITNDSASYLHTFGVTEGLLSDSPFYGL VLICILVAISSRGEKLLFKISTGMVLTKLLVVAALGVSMVGMWHLYNIGALPPMALLI KNAIITLPFTLTSILFIQTLSPMVISYRSREKSIEVARHKALRAMNIAFGILFVTVFF YAVSFTLAMGHDEAVKAYEQNISALAIAAQFISGDGAGWVKVVSVILNIFAVMTAFFG VYLGFREATQGIVMNILRRKMPAEKIKENLVQRGIMIFAILLAWSAIVLNAPVLSFTS ICSPIFGMVGCLIPAWLVYKVPALHKYKGASLYLIIITGLLLCVSPFLAFS" misc_feature complement(3403391..3404593) /gene="yhaO" /locus_tag="STM3239" /note="Solute carrier families 5 and 6-like; solute binding domain; Region: SLC5-6-like_sbd; cl00456" /db_xref="CDD:444915" regulatory complement(3404693..3404698) /regulatory_class="ribosome_binding_site" /gene="yhaO" /locus_tag="STM3239" /note="putative RBS for yhaO; RegulonDB:STMS1H003265" gene complement(3405005..3406374) /gene="tdcG" /locus_tag="STM3240" /db_xref="GeneID:1254763" CDS complement(3405005..3406369) /gene="tdcG" /locus_tag="STM3240" /EC_number="4.3.1.17" /note="similar to E. coli L-serine dehydratase (deaminase), L-SD2 (AAC75839.1); Blastp hit to AAC75839.1 (455 aa), 74% identity in aa 1 - 452" /codon_start=1 /transl_table=11 /product="L-serine deaminase" /protein_id="NP_462154.1" /db_xref="GeneID:1254763" /translation="MISAFDIFKIGIGPSSSHTVGPMNAGKCFIDRLIDSGDLPRTTR ITVDLYGSLSLTGKGHATDTAVIMGLAGNTPQDVNIDSIPAFIQEVARSSRLSVAGGA HVVDFPVADSIFFHAETLARHENGMRITAWNGQAPLLHKTYYSIGGGFIVEEERFGQS HDVEKSVPYDFHSASELLTLCERQGLSVSGLMMQNELALRSKEQIDAGFARIWQVMAT GIERGMNTEGVLPGPLNVPRRAVALRRLLVSSDNLSRDPMNVIDWINMFALAVSEENA AGGRVVTAPTNGACGIIPAVLAYYDKFRRPVNANSIARYLLSAGAIGMLYKMNASISG AEVGCQGEVGVACSMAAAGLTELLGGSPAQVCIAAEIAMEHNLGLTCDPVAGQVQIPC IERNAINAVKAVNAARMALRRTSEPRVSLDKVIETMYETGKDMNDKYRETSRGGLAIK VVCG" misc_feature complement(3405008..3406369) /gene="tdcG" /locus_tag="STM3240" /note="L-serine ammonia-lyase; Region: PRK15040" /db_xref="CDD:185000" regulatory complement(3406369..3406374) /regulatory_class="ribosome_binding_site" /gene="tdcG" /locus_tag="STM3240" /note="putative RBS for tdcG; RegulonDB:STMS1H003266" gene complement(3406439..3408748) /gene="tdcE" /locus_tag="STM3241" /db_xref="GeneID:1254764" CDS complement(3406439..3408733) /gene="tdcE" /locus_tag="STM3241" /EC_number="2.3.1.54" /note="similar to E. coli probable formate acetyltransferase 3 (AAC76149.1); Blastp hit to AAC76149.1 (746 aa), 93% identity in aa 1 - 741; pyruvate formate-lyase 4" /codon_start=1 /transl_table=11 /product="2-ketobutyrate formate-lyase" /protein_id="NP_462155.1" /db_xref="GeneID:1254764" /translation="MKVNIDTSDMLYAEAWRDFKGTDWKEEINVRDFIQHNYTPYEGD ESFLADATPATTALWEKVMAGIRIENATHAPVDFDTNIATTITAHDAGYIEKELEKIV GLQTDKPLKRALHPFGGVNMIKSSFHAYGREMDADFEYTFTDLRKTHNQGVFDVYSPD MLRCRKSGVLTGLPDGYGRGRIIGDYRRVALYGIRYLVRERELQFADLQSNLEQGQNL EATIRLREELAEHRRALLQMQEMAAKYGYDISRPARNAQEAVQWLYFAYLAAVKSQNG GAMSLGRTASFLDIYIERDFNAGLLTEQQAQELIDHFIMKIRMVRFLRTPEFDSLFSG DPIWATEVIGGMGLDGRTLVTKNSFRYLHTLHTMGPAPEPNLTILWSEALPVAFKKYA AQVSIVTSSLQYENDDLMRTDFNSDDYAIACCVSPMVIGKQMQFFGARANLAKTLLYA INGGVDEKLKIQVGPKTAPLTDEVLDYDAVMESLDHFMDWLAVQYISALNIIHYMHDK YSYEASLMALHDRDVYRTMACGIAGLSVAADSLSAIRYAQVKPIRDENGLAIDFAIEG EYPQYGNNDERVDSIACDLVKRFMQKISVLPTYRNAVPTQSILTITSNVVYGQKTGNT PDGRRAGTPFAPGANPMHGRDRKGAVASLTSVAKLPFTYAKDGISYTFSIVPAALGKE DAVRKTNLVGLLDGYFHHEAQVEGGQHLNVNVMNREMLLDAIEHPENYPNLTIRVSGY AVRFNALTREQQQDVISRTFTQAM" misc_feature complement(3406454..3408691) /gene="tdcE" /locus_tag="STM3241" /note="Pyruvate formate lyase 1; Region: PFL1; cd01678" /db_xref="CDD:153087" misc_feature complement(order(3408236..3408241,3408248..3408250, 3408263..3408265,3408269..3408274,3408281..3408286, 3408368..3408373)) /gene="tdcE" /locus_tag="STM3241" /note="coenzyme A binding site [chemical binding]; other site" /db_xref="CDD:153087" misc_feature complement(order(3406901..3406903,3406907..3406909, 3407414..3407416,3407423..3407425,3407465..3407467, 3407720..3407722,3407738..3407740,3407900..3407905, 3408191..3408193)) /gene="tdcE" /locus_tag="STM3241" /note="active site" /db_xref="CDD:153087" misc_feature complement(order(3406517..3406519,3407462..3407467)) /gene="tdcE" /locus_tag="STM3241" /note="catalytic residues [active]" /db_xref="CDD:153087" misc_feature complement(3406514..3406528) /gene="tdcE" /locus_tag="STM3241" /note="glycine loop [active]" /db_xref="CDD:153087" regulatory complement(3408743..3408748) /regulatory_class="ribosome_binding_site" /gene="tdcE" /locus_tag="STM3241" /note="putative RBS for tdcE; RegulonDB:STMS1H003267" gene complement(3408767..3409988) /gene="tdcD" /locus_tag="STM3242" /db_xref="GeneID:1254765" CDS complement(3408767..3409975) /gene="tdcD" /locus_tag="STM3242" /EC_number="2.7.2.-" /note="propionate kinase. (SW:TDCD_SALTY)" /codon_start=1 /transl_table=11 /product="acetate kinase II (anaerobic)" /protein_id="NP_462156.1" /db_xref="GeneID:1254765" /translation="MNEFPVVLVINCGSSSIKFSVLDVATCDVLMAGIADGMNTENAF LSINGDKPINLAHSNYEDALKAIAFELEKRDLTDSVALIGHRIAHGGELFTQSVIITD EIIDNIRRVSPLAPLHNYANLSGIDAARHLFPAVRQVAVFDTSFHQTLAPEAYLYGLP WEYFSSLGVRRYGFHGTSHRYVSRRAYELLDLDEKDSGLIVAHLGNGASICAVRNGQS VDTSMGMTPLEGLMMGTRSGDVDFGAMAWIAKETGQTLSDLERVVNKESGLLGISGLS SDLRVLEKAWHEGHERARLAIKTFVHRIARHIAGHAASLHRLDGIIFTGGIGENSVLI RQLVIEHLGVLGLTLDVEMNKQPNSHGERIISANPSQVICAVIPTNEEKMIALDAIHL GNVKAPVEFA" misc_feature complement(3408788..3409975) /gene="tdcD" /locus_tag="STM3242" /note="propionate kinase; Region: PRK12379" /db_xref="CDD:183484" regulatory complement(3409983..3409988) /regulatory_class="ribosome_binding_site" /gene="tdcD" /locus_tag="STM3242" /note="putative RBS for tdcD; RegulonDB:STMS1H003268" gene complement(3410041..3411383) /gene="tdcC" /locus_tag="STM3243" /db_xref="GeneID:1254766" CDS complement(3410041..3411372) /gene="tdcC" /locus_tag="STM3243" /note="anaerobically inducible; similar to E. coli anaerobically inducible L-threonine, L-serine permease (AAC76151.1); Blastp hit to AAC76151.1 (443 aa), 94% identity in aa 1 - 443" /codon_start=1 /transl_table=11 /product="HAAAP family L-threonine/ L-serine permease" /protein_id="NP_462157.1" /db_xref="GeneID:1254766" /translation="MSTTDSIVSSQAKQSSWRKSDTTWTLGLFGTAIGAGVLFFPIRA GFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITF LYFFAICPLLWIYGVTITNTFMTFWENQLQMPALNRGFVALFLLLLMAFVIWFGKDLM VKVMSYLVWPFIASLVLISLSLIPYWNSAVIDQVDLSNIALTGHDGILVTVWLGISIM VFSFNFSPIVSSFVVSKREEYEKEFGREFTERKCSQIISRASMLMVAVVMFFAFSCLF TLSPQNMADAKAQNIPVLSYLANHFASLSGTKSTFATVLEYGASIIALVAIFKSFFGH YLGTLEGLNGLVLKFGYKGDKTKVSMGKLNTISMIFIMGSTWVVAYANPNILDLIEAM GAPIIASLLCLLPMYAIRKAPSLAKYRGRLDNVFVTLIGLLTILNIVYKLF" misc_feature complement(3410044..3411372) /gene="tdcC" /locus_tag="STM3243" /note="threonine/serine transporter TdcC; Provisional; Region: PRK13629" /db_xref="CDD:184191" regulatory complement(3411378..3411383) /regulatory_class="ribosome_binding_site" /gene="tdcC" /locus_tag="STM3243" /note="putative RBS for tdcC; RegulonDB:STMS1H003269" gene complement(3411393..3412399) /gene="tdcB" /locus_tag="STM3244" /db_xref="GeneID:1254767" CDS complement(3411393..3412382) /gene="tdcB" /locus_tag="STM3244" /EC_number="4.3.1.19" /note="catabolic; similar to E. coli threonine dehydratase, catabolic (AAC76152.1); Blastp hit to AAC76152.1 (329 aa), 95% identity in aa 1 - 329" /codon_start=1 /transl_table=11 /product="threonine dehydratase" /protein_id="NP_462158.1" /db_xref="GeneID:1254767" /translation="MHITYDLPVAIEDILEAKKRLAGKIYKTGMPRSNYFSERCKGEI FLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKGVVACSAGNHAQGVSLSCAMLGIDGK VVMPKGAPKSKVAATCDYSAEVVLHGDNFNDTIAKVSEIVETEGRIFIPPYDDPKVIA GQGTIGLEIMEDLYDVDNVIVPIGGGGLIAGIAIAIKSINPTIKVIGVQAENVHGMAA SYYTGEITTHRTTGTLADGCDVSRPGNLTYEIVRELVDDIVLVSEDEIRNSMIALIQR NKVITEGAGALACAALLSGKLDSHIQNRKTVSIISGGNIDLSRVSQITGLVDA" misc_feature complement(3411402..3412382) /gene="tdcB" /locus_tag="STM3244" /note="bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB; Region: PRK08638" /db_xref="CDD:236317" misc_feature complement(order(3411435..3411446,3411543..3411551, 3411561..3411563,3411570..3411575,3411582..3411584, 3411789..3411794,3412230..3412235,3412326..3412331, 3412338..3412340,3412347..3412352)) /gene="tdcB" /locus_tag="STM3244" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:107205" misc_feature complement(order(3411450..3411452,3411819..3411833, 3412128..3412130,3412209..3412211)) /gene="tdcB" /locus_tag="STM3244" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:107205" misc_feature complement(3412209..3412211) /gene="tdcB" /locus_tag="STM3244" /note="catalytic residue [active]" /db_xref="CDD:107205" regulatory complement(3412394..3412399) /regulatory_class="ribosome_binding_site" /gene="tdcB" /locus_tag="STM3244" /note="putative RBS for tdcB; RegulonDB:STMS1H003270" gene complement(3412480..3413427) /gene="tdcA" /locus_tag="STM3245" /db_xref="GeneID:1254768" CDS complement(3412480..3413418) /gene="tdcA" /locus_tag="STM3245" /note="LysR family; similar to E. coli transcriptional activator of tdc operon (AAC76153.1); Blastp hit to AAC76153.1 (312 aa), 89% identity in aa 1 - 311" /codon_start=1 /transl_table=11 /product="transcriptional activator of tdc operon" /protein_id="NP_462159.1" /db_xref="GeneID:1254768" /translation="MNTLVLPKTQHLVVFQEVIRSGSIGSAAKSLGLTQPAVSKIISD VEAYFGVELIVRKNTGVTLTEAGQVLLSWSESITREMKNMINEMNSMTCNTVVDVSFG FPSLIGFTFMSDMIHKFKEVFPKAQVSMYEAQLSSFLPALRDGRLDFAIGTLSNEMQL QDLHVEPLFESEFVLVASKSRTCTGTITLESLKDEQWVLPQTNMGYYSELLTTLQRNG ISIENIVKTDSVVTIYNLVLNADFLTVIPCDMTTPFGSNQFITIPIQDTLPVARYAAV WSKNYRIKKAASVLVELAKQYSSYNGCRRRQLIEIE" misc_feature complement(3412483..3413418) /gene="tdcA" /locus_tag="STM3245" /note="transcriptional regulator TdcA; Region: PRK10341" /db_xref="CDD:182391" regulatory complement(3413422..3413427) /regulatory_class="ribosome_binding_site" /gene="tdcA" /locus_tag="STM3245" /note="putative RBS for tdcA; RegulonDB:STMS1H003271" protein_bind complement(3413479..3413499) /note="putative binding site for CRP, RegulonDB: STMS1H000117" /bound_moiety="CRP" protein_bind complement(3413543..3413557) /note="putative binding site for IHF, RegulonDB: STMS1H000232" /bound_moiety="IHF" protein_bind complement(3413581..3413603) /note="putative binding site for FNR, RegulonDB: STMS1H000168" /bound_moiety="FNR" protein_bind complement(3413603..3413619) /note="putative binding site for TdcA, RegulonDB: STMS1H000369" /bound_moiety="TdcA" protein_bind complement(3413647..3413663) /note="putative binding site for LysR, RegulonDB: STMS1H000268" /bound_moiety="LysR" protein_bind complement(3413694..3413718) /note="putative binding site for TdcR, RegulonDB: STMS1H000370" /bound_moiety="TdcR" gene 3414806..3415186 /gene="rnpB" /locus_tag="STM3246" /db_xref="GeneID:1254769" regulatory 3414806..3414811 /regulatory_class="ribosome_binding_site" /gene="rnpB" /locus_tag="STM3246" /note="putative RBS for rnpB; RegulonDB:STMS1H003272" ncRNA 3414810..3415186 /ncRNA_class="other" /gene="rnpB" /locus_tag="STM3246" /product="regulatory RNA" /db_xref="GeneID:1254769" gene complement(3415217..3416374) /gene="garK" /locus_tag="STM3247" /db_xref="GeneID:1254770" CDS complement(3415217..3416362) /gene="garK" /locus_tag="STM3247" /note="similar to E. coli orf, hypothetical protein (AAC76158.1); Blastp hit to AAC76158.1 (408 aa), 86% identity in aa 28 - 408" /codon_start=1 /transl_table=11 /product="glycerate kinase" /protein_id="NP_462160.1" /db_xref="GeneID:1254770" /translation="MKIVIAPDSYKESLSAAEVAQAIEKGFREIFPDAQYVSVPVADG GEGTVEAMIAATQGVERAAWVTGPLGEKVKACWGMSGDGKTAFIEMAAASGLALVPPE KRNPLITTSRGTGELILQALESGASNIIIGIGGSATNDGGAGMMQALGAKLRDANGAD IGYGGGSLHCLSDIDISELDPRLKLCAIRVACDVSNPLIGDNGASRIFGPQKGATEEN IVELDRNLAHYADIIKKSLNVDVKTAPGAGAAGGMGAALMAFLGAELRSGIEIVTAAL NLEEHIHDCTLVVTGEGRIDSQSIRGKVPIGVANVAKKYHKPVIGIAGSLTHDVGIVH HYGIDAVFSVLTRIVTLEEAFRGAFDNIYRASRNVAAALAIGMRSAG" misc_feature complement(3415220..3416362) /gene="garK" /locus_tag="STM3247" /note="glycerate kinase I; Provisional; Region: PRK10342" /db_xref="CDD:182392" regulatory complement(3416369..3416374) /regulatory_class="ribosome_binding_site" /gene="garK" /locus_tag="STM3247" /note="putative RBS for garK; RegulonDB:STMS1H003273" gene complement(3416460..3417368) /gene="garR" /locus_tag="STM3248" /db_xref="GeneID:1254771" CDS complement(3416460..3417350) /gene="garR" /locus_tag="STM3248" /EC_number="1.1.1.60" /note="similar to E. coli putative dehydrogenase (AAC76159.1); Blastp hit to AAC76159.1 (299 aa), 97% identity in aa 4 - 299" /codon_start=1 /transl_table=11 /product="tartronate semialdehyde reductase (TSAR)" /protein_id="NP_462161.1" /db_xref="GeneID:1254771" /translation="MTMKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAA GAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLA SREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVV HTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLD AKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGN DDHSALACYYEKLAKVEVTR" misc_feature complement(3416463..3417350) /gene="garR" /locus_tag="STM3248" /note="tartronate semialdehyde reductase; Provisional; Region: garR; PRK11559" /db_xref="CDD:183197" regulatory complement(3417363..3417368) /regulatory_class="ribosome_binding_site" /gene="garR" /locus_tag="STM3248" /note="putative RBS for garR; RegulonDB:STMS1H003274" gene complement(3417376..3418158) /gene="garL" /locus_tag="STM3249" /db_xref="GeneID:1254772" CDS complement(3417376..3418146) /gene="garL" /locus_tag="STM3249" /note="similar to E. coli orf, hypothetical protein (AAC76160.1); Blastp hit to AAC76160.1 (256 aa), 90% identity in aa 1 - 256" /codon_start=1 /transl_table=11 /product="2-dehydro-3-deoxy-galactarate Aldolase" /protein_id="NP_462162.1" /db_xref="GeneID:1254772" /translation="MNNAIFPNKFKAALAAQQVQIGCWSALASPITTEVLGLAGFDWL VLDGEHAPNDVTTLIPQLMALKGSASAPVVRVPTNEPVIIKRMLDIGFYNFLIPFVET QEEAARAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITIIVQIESQLGVDN VDAIAATEGVDGIFVGPSDLAAALGHLGNASHPDVQQTIQHIFARAKAHGKPCGILAP VEADARRYLEWGATFVAVGSDLGAFRASTQKLADTFKK" misc_feature complement(3417379..3418146) /gene="garL" /locus_tag="STM3249" /note="alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional; Region: PRK10558" /db_xref="CDD:182547" regulatory complement(3418153..3418158) /regulatory_class="ribosome_binding_site" /gene="garL" /locus_tag="STM3249" /note="putative RBS for garL; RegulonDB:STMS1H003275" gene 3418659..3420247 /gene="garD" /locus_tag="STM3250" /db_xref="GeneID:1254773" regulatory 3418659..3418664 /regulatory_class="ribosome_binding_site" /gene="garD" /locus_tag="STM3250" /note="putative RBS for garD; RegulonDB:STMS1H003276" CDS 3418676..3420247 /gene="garD" /locus_tag="STM3250" /EC_number="4.2.1.42" /note="similar to E. coli putative hydrolase (AAC76162.1); Blastp hit to AAC76162.1 (523 aa), 93% identity in aa 1 - 523" /codon_start=1 /transl_table=11 /product="galactarate dehydrogenase" /protein_id="NP_462163.1" /db_xref="GeneID:1254773" /translation="MANIEIRQESPSAFYIKVHETDNVAIIVNDHGLKAGTRFPDGLE LTEHIPQGHKVALTDIPAHGEIIRYGEVIGYAVRDIPRGSWIDESLVELPKAPPLNTL PLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKVIERDL LPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNIALNPNFGGEVMVIGLGCEKL QPERLLEGTEDVPAIAVESASIVRLQDEQHVGFKSMVDDILRVAERHLTKLNQRQRET CPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTP RAINEAVGKRLLDEMAWYDNYLDMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGK SAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVP VIKMATRTELANRWYDLMDINAGTIATGEETIEDVGWKLFHFILDVASGRKKTFSDQW GLHNQLAVFNPAPVT" misc_feature 3418718..3420244 /gene="garD" /locus_tag="STM3250" /note="galactarate dehydratase; Region: galactar-dH20; TIGR03248" /db_xref="CDD:274491" gene complement(3420487..3421440) /locus_tag="STM3251" /db_xref="GeneID:1254774" CDS complement(3420487..3421434) /locus_tag="STM3251" /note="similar to E. coli ribokinase (AAC76775.1); Blastp hit to AAC76775.1 (309 aa), 23% identity in aa 6 - 308" /codon_start=1 /transl_table=11 /product="putative ribokinase family sugar kinase" /protein_id="NP_462164.1" /db_xref="GeneID:1254774" /translation="MNITIATLGELLVEFLAKKENQGFSSPGEFWGPYPSGAPAIFAD QVAKLGFRSLLFSCVGNDAFGVMNITRLSRDGVNVQGISVLPNATTGSAFVSYRSQAQ RDFIFNMPDSACGLLSADHLDETLLRQYRHFHIMGSSLFSFRLIDAVRKAISIVKENG GTISFDPNIRKEMLKIREMSQAFEYILDYTDFFLPSDGELDYFGLSKSRDEEKIVARL HKRGIAHVIIKRGARGASYYSKDEQHHVAGYPVKVVDPTGAGDCFGATFVSLFLAGYS VPDALAHANAAGSLAISARGPMEGTSTLAQIKELMRQQN" misc_feature complement(3420541..3421422) /locus_tag="STM3251" /note="2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166" /db_xref="CDD:238571" misc_feature complement(order(3420544..3420546,3420652..3420654, 3420661..3420663,3420925..3420927,3421021..3421023, 3421108..3421110,3421114..3421116,3421156..3421158, 3421312..3421314,3421321..3421326)) /locus_tag="STM3251" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238571" misc_feature complement(order(3420568..3420570,3420580..3420582, 3420646..3420648,3420655..3420663,3420688..3420690, 3420733..3420735,3420748..3420750)) /locus_tag="STM3251" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238571" regulatory complement(3421435..3421440) /regulatory_class="ribosome_binding_site" /locus_tag="STM3251" /note="putative RBS for STM3251; RegulonDB:STMS1H003277" gene complement(3421445..3422298) /gene="agaR" /locus_tag="STM3252" /db_xref="GeneID:1254775" CDS complement(3421445..3422278) /gene="agaR" /locus_tag="STM3252" /note="DeoR family; similar to E. coli putative DEOR-type transcriptional regulator of aga operon (AAC76165.1); Blastp hit to AAC76165.1 (269 aa), 26% identity in aa 10 - 252" /codon_start=1 /transl_table=11 /product="aga operon transcriptional repressor" /protein_id="NP_462165.1" /db_xref="GeneID:1254775" /translation="MAKPSTSLLKRRLDIAEIVRKNGEIKVDDLAEMLSVSGVTIRND LNYLEQQGYLKRSFGGAIYTAQPVRAAVSHEVVQSQALEHSVELELAKQVARLVCDDD TVFLGAGEVLRKALPFLGDYRDLCLIINDLSHVAPARDYIDGEIVLLGGVLGHSGQAL GGEIAIQSLQQFQPSCCLVMVDHISEDGTLNVKNESAAALLSECLRLSGQSIAVVAQR PIHDVARYPVGKLNTLSAIITPQIVAAEYHSRFLADGLTNSYTNNECLTWINPTLHQA R" misc_feature complement(3421508..3422251) /gene="agaR" /locus_tag="STM3252" /note="DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]; Region: GlpR; COG1349" /db_xref="CDD:440960" regulatory complement(3422293..3422298) /regulatory_class="ribosome_binding_site" /gene="agaR" /locus_tag="STM3252" /note="putative RBS for agaR; RegulonDB:STMS1H003278" gene 3422547..3423466 /locus_tag="STM3253" /db_xref="GeneID:1254776" regulatory 3422547..3422555 /regulatory_class="minus_35_signal" /locus_tag="STM3253" /note="putative -35_signal for STM3253; RegulonDB:STMLTH004583" regulatory 3422573..3422581 /regulatory_class="minus_10_signal" /locus_tag="STM3253" /note="putative -10_signal for STM3253; RegulonDB:STMLTH004583" regulatory 3422600..3422605 /regulatory_class="ribosome_binding_site" /locus_tag="STM3253" /note="putative RBS for STM3253; RegulonDB:STMS1H003279" CDS 3422612..3423466 /locus_tag="STM3253" /EC_number="4.1.2.-" /note="similar to E. coli tagatose-bisphosphate aldolase 1 (AAC75157.1); Blastp hit to AAC75157.1 (286 aa), 65% identity in aa 3 - 285" /codon_start=1 /transl_table=11 /product="putative fructose/tagatose biphosphate aldolase" /protein_id="NP_462166.1" /db_xref="GeneID:1254776" /translation="MFIISSKNMLQKAQHAGYAVPAFNIHNLETLQVVVETAAEMRSP LIVAGTPGTFSYAGMGNIVAIAGDLAREYNLPLAIHLDHHESLADIESKVMAGIRSVM IDGSHFPFEENVALVKSVVDFCHRYDTSVEAELGRLGGIEDDLVVDSKDALYTNPQQA REFVARTGIDSLAVAIGTAHGMYAAEPKLDFERLAEIRALVDIPLVLHGASGLPESDI RQAISLGVCKVNVATELKIAFSDALKEYFLQNPKANDPRHYMQPAKQAMKEVVRKVIH VCGCEGQL" misc_feature 3422612..3423463 /locus_tag="STM3253" /note="tagatose-bisphosphate aldolase subunit GatY; Region: gatY; PRK12737" /db_xref="CDD:183710" misc_feature order(3422690..3422698,3422705..3422707,3422765..3422767, 3422774..3422782,3422792..3422794,3422804..3422806, 3422813..3422818,3423035..3423037,3423308..3423313, 3423317..3423322,3423329..3423331,3423341..3423343, 3423350..3423352) /locus_tag="STM3253" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238477" misc_feature order(3422855..3422860,3423146..3423154,3423158..3423160, 3423233..3423238,3423242..3423244,3423299..3423301, 3423305..3423310) /locus_tag="STM3253" /note="active site" /db_xref="CDD:238477" misc_feature order(3422858..3422860,3423149..3423151,3423233..3423235) /locus_tag="STM3253" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:238477" misc_feature order(3423146..3423148,3423152..3423154,3423158..3423160, 3423236..3423238,3423242..3423244) /locus_tag="STM3253" /note="Na+ binding site [ion binding]; other site" /db_xref="CDD:238477" gene 3423470..3424391 /locus_tag="STM3254" /db_xref="GeneID:1254777" regulatory 3423470..3423475 /regulatory_class="ribosome_binding_site" /locus_tag="STM3254" /note="putative RBS for STM3254; RegulonDB:STMS1H003280" CDS 3423477..3424391 /locus_tag="STM3254" /note="similar to E. coli 6-phosphofructokinase II; suppressor of pfkA (AAC74793.1); Blastp hit to AAC74793.1 (309 aa), 27% identity in aa 4 - 291" /codon_start=1 /transl_table=11 /product="putative fructose-1-phosphate kinase" /protein_id="NP_462167.1" /db_xref="GeneID:1254777" /translation="MIYTLTLNSAIDMNIFSDPLQPNIVNRTHHTEFCPNGKGVNVAL VLDHFQIPAHILGIFGGFTGHYIVESLRTRKMPVTPAWVEEPTRINIFIHDGKQEYKL VNPGSYIPDECKQQIITIISQLPDADYLVISGSLPQGIESRFYAEIMHICQQKNIGVI LDISHPSLRQLLEFKPLLIKPNDEEVKAIFGLTVSDDNDAKNTLTTLHALGAQNVLLT LGAKGMYFSNGIDYWFCSAPTVDLVSSACAGDAALAAFLSQWLSTGEVEYALSLASAT GADVASSAGLGQLAAIETLLSQIHVRKL" misc_feature 3423480..3424379 /locus_tag="STM3254" /note="1-phosphofructokinase; Region: pfkB; TIGR03828" /db_xref="CDD:274804" misc_feature order(3423603..3423605,3423615..3423617,3423633..3423635, 3423639..3423641,3423873..3423875) /locus_tag="STM3254" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:238570" misc_feature order(3423960..3423962,3424014..3424016,3424020..3424022, 3424128..3424130,3424146..3424148,3424218..3424220, 3424224..3424226) /locus_tag="STM3254" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:238570" gene 3424413..3425845 /locus_tag="STM3255" /db_xref="GeneID:1254778" regulatory 3424413..3424418 /regulatory_class="ribosome_binding_site" /locus_tag="STM3255" /note="putative RBS for STM3255; RegulonDB:STMS1H003281" CDS 3424418..3425845 /locus_tag="STM3255" /note="similar to E. coli PTS system, fructose-specific transport protein (AAC75228.1); Blastp hit to AAC75228.1 (563 aa), 42% identity in aa 104 - 562, 32% identity in aa 2 - 41" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system fructose-specific component IIB" /protein_id="NP_462168.1" /db_xref="GeneID:1254778" /translation="MKKIIAVTGCPTGIAHTFMAEEALKNAAKKLSVEIKVETNGASG VENAIQPADLVDIAGVIIAADKDVLPDRFNGLPVIEVPVKEAIHHPAELINKVINGEA PIRKGESTTSTEIIEKESLGRQIYKHLMSGVSNMLPFVVAGGILIAVSFLWGIYSADP NSAEYNATAAMLMKIGQQAFSIMVPVFTAYIAFSISGRPGMVAGFVGGLLANATGAGF LGGIIAGFAAGYLMLWVKNRLEGLPRQYEGLKSIFIMPLIGVLVIGVLMSLLGQPVAA INNSMMNWLASLQEANPILLGIVVGAMCSFDFGGPVNKAAYVTGTLLLGQGNFYFMAG VSAACITPPLVIALATTFFPKGFSEEERAAGMVNYILGCTHITEGAIPFAAKDPLRVI PMMMIASSISAVLSYSLRIQVPAPHGGFLILPLVSQPLAWVLCILAGSACGAVMLGLW RLWAVRKNSVNTTPVAKAGGQNAAL" misc_feature 3424418..3425803 /locus_tag="STM3255" /note="Phosphotransferase system, fructose-specific IIC component [Carbohydrate transport and metabolism]; Region: FrwC; COG1299" /db_xref="CDD:440910" gene 3425825..3426638 /locus_tag="STM3256" /db_xref="GeneID:1254779" regulatory 3425825..3425830 /regulatory_class="ribosome_binding_site" /locus_tag="STM3256" /note="putative RBS for STM3256; RegulonDB:STMS1H003282" CDS 3425832..3426638 /locus_tag="STM3256" /note="similar to E. coli PTS system, fructose-specific IIA/fpr component (AAC75230.1); Blastp hit to AAC75230.1 (376 aa), 52% identity in aa 3 - 141, 41% identity in aa 197 - 374" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system mannitol/fructose-specific IIA domain protein" /protein_id="NP_462169.1" /db_xref="GeneID:1254779" /translation="MQLCEHDIFISDERLDKVTALHRVVEKLSAAGNTTTDYLRGMLD REAQISTYLGNGIAIPHGTPESRDAVLQTGVKVIVFRHGVDWGDGNTAYLVTGIAARS NEHLEILRQLTRVLSDDAILQALAKAESPSQVLALLTGSTTNTPAAVELQEGEQATFV IHNPHGLHARPSAVLVKFIKQFQSHITVENLDNASGPVDGKNLMRVVSLGAKKGHRLL FRAQGEDAQQALREIGELIASGAGEMITVPVTPPPEVMQPKRSWLSRLFN" misc_feature 3425835..3426560 /locus_tag="STM3256" /note="fused PTS fructose transporter subunit IIA/HPr protein; Region: PRK11109" /db_xref="CDD:236849" gene 3426824..3428107 /locus_tag="STM3257" /db_xref="GeneID:1254780" regulatory 3426824..3426829 /regulatory_class="ribosome_binding_site" /locus_tag="STM3257" /note="putative RBS for STM3257; RegulonDB:STMS1H003283" CDS 3426836..3428107 /locus_tag="STM3257" /EC_number="2.7.1.144" /note="similar to E. coli putative tagatose 6-phosphate kinase 1 (AAC75156.1); Blastp hit to AAC75156.1 (420 aa), 72% identity in aa 1 - 418" /codon_start=1 /transl_table=11 /product="putative tagatose 6-phosphate kinase 1" /protein_id="NP_462170.1" /db_xref="GeneID:1254780" /translation="MKEIIARHKAGEHLGICSVCSAHPLVIESALLFDLNTDNKVLIE ATSNQVNQFGGYTGMKPADFRDFVYGIAQEVGFPRERLILGGDHLGPNCWQNEPAAAA MEKSVELIKAYVAAGFSKIHLDASMSCADDPTPLDPMVVARRAAVLCKAAEGTANEEQ KCHLTYVIGTEVPVPGGEASTIGSVHVTREVDAARTLETHQIAFRESGLEEALSRVIA IVVQPGVEFDHTQIIHYQPQAAQALSAWIKETPMVYEAHSTDYQTRQAYRALVRDHYA ILKVGPALTFALREAIFALAQMENELISPEQRSRVLEVIDEVMLNEPGYWKKYYRPTW SQAMVDIHFSLSDRIRYYWPHPRIRQSVEKLIANLNNVTLPLGLISQFMPVQFERLSE GVLTPTPHNLIIDKIQDVLRAYRFGCTPDVA" misc_feature 3426836..3428098 /locus_tag="STM3257" /note="tagatose-bisphosphate aldolase subunit GatZ; Region: PRK15052" /db_xref="CDD:237889" gene 3428111..3428586 /locus_tag="STM3258" /db_xref="GeneID:1254781" regulatory 3428111..3428116 /regulatory_class="ribosome_binding_site" /locus_tag="STM3258" /note="putative RBS for STM3258; RegulonDB:STMS1H003284" CDS 3428122..3428586 /locus_tag="STM3258" /note="sugar specific-family of transport protein; similar to E. coli galactitol-specific enzyme IIA of phosphotransferase system (AAC75155.1); Blastp hit to AAC75155.1 (150 aa), 60% identity in aa 1 - 150" /codon_start=1 /transl_table=11 /product="galactitol-specific enzyme IIA of phosphotransferase system" /protein_id="NP_462171.1" /db_xref="GeneID:1254781" /translation="MSQLFVRTGITFDSSQQALAHIGKEMLAKGVVHDSYPQALVERE ASFPTGIALERHAVAIPHCEAVHAKSPAIYLIRPDKPVMFQQADDDEEIAVSLIIALI VENPAAQLKLLRRLFSELQNPSTLDALLSAPDAELAIRFQETILEPEQCVQV" misc_feature 3428122..3428571 /locus_tag="STM3258" /note="PTS galactitol transporter subunit IIA; Region: PRK09665" /db_xref="CDD:182023" misc_feature order(3428248..3428250,3428305..3428307) /locus_tag="STM3258" /note="active site" /db_xref="CDD:238129" misc_feature 3428305..3428307 /locus_tag="STM3258" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238129" gene 3428605..3428901 /locus_tag="STM3259" /db_xref="GeneID:1254782" regulatory 3428605..3428610 /regulatory_class="ribosome_binding_site" /locus_tag="STM3259" /note="putative RBS for STM3259; RegulonDB:STMS1H003285" CDS 3428617..3428901 /locus_tag="STM3259" /note="similar to E. coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); Blastp hit to AAC75154.1 (94 aa), 77% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="PTS family galactitol-specific enzyme IIB" /protein_id="NP_462172.1" /db_xref="GeneID:1254782" /translation="MKRKVIVACGGAVATSTMAAEEIKELCDANHIELDLVQCRVTEI ETYMDGADLICTTARVDRAFGNIPVVHGMPFVSGVGIEALQQKILSILMG" misc_feature 3428617..3428898 /locus_tag="STM3259" /note="PTS galactitol transporter subunit IIB; Region: PRK10310" /db_xref="CDD:182372" misc_feature order(3428641..3428652,3428656..3428664) /locus_tag="STM3259" /note="P-loop; other site" /db_xref="CDD:99908" misc_feature order(3428641..3428643,3428647..3428652,3428659..3428664) /locus_tag="STM3259" /note="active site" /db_xref="CDD:99908" misc_feature 3428641..3428643 /locus_tag="STM3259" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99908" gene 3428893..3430278 /locus_tag="STM3260" /db_xref="GeneID:1254783" regulatory 3428893..3428898 /regulatory_class="ribosome_binding_site" /locus_tag="STM3259" /note="putative RBS for STM3260; RegulonDB:STMS1H003286" CDS 3428905..3430278 /locus_tag="STM3260" /note="similar to E. coli PTS system galactitol-specific enzyme IIC (AAC75153.1); Blastp hit to AAC75153.1 (451 aa), 85% identity in aa 1 - 446" /codon_start=1 /transl_table=11 /product="PTS family galactitol-specific enzyme IIC" /protein_id="NP_462173.1" /db_xref="GeneID:1254783" /translation="MFSEIMRYILDLGPTVMLPLVIIVFSKLLGMKLGDCFKSGLHIG IGFVGIGLVIGLMLDSIGPAAKAMAEHFQINLHVIDVGWPGSSPMTWASQIALVAIPV AIGVNVLMLVTRMTRVVNVDIWNIWHMTFTGAMLHLATGSYWLGILGVVVHAAFVYKL GDWFAKDTRDYFGLEGIAIPHGSSAYLGPVAVLVDTIIEKIPGLNRIHFSADDVQKRF GPFGEPVTVGFVMGLVIGVLAGYDAKAVLQLAVKTAAVMLLMPRVIKPIMDGLTPIAK HARKRLQAKFGGQEFLIGLDPALLLGHTSVVSASLIFIPLTILIAVLVPGNQVLPFGD LATIGFFIAMAVAVHQGNLFRTLISGVIIMGITLWIATQTIGLHTQLAANAGALKAGG QVASLDQGGSPITWLLIQLFTWQNIVGFAVIAIIYLAGVLLTWRRARQFVAAEKATAL QQSQIAS" misc_feature 3428929..3430143 /locus_tag="STM3260" /note="PTS sugar transporter subunit IIC; Region: PRK12997; cl04451" /db_xref="CDD:471037" gene 3430310..3431365 /locus_tag="STM3261" /db_xref="GeneID:1254784" regulatory 3430310..3430315 /regulatory_class="ribosome_binding_site" /locus_tag="STM3261" /note="putative RBS for STM3261; RegulonDB:STMS1H003287" CDS 3430322..3431365 /locus_tag="STM3261" /EC_number="1.1.1.-" /note="similar to E. coli galactitol-1-phosphate dehydrogenase (AAC75152.1); Blastp hit to AAC75152.1 (346 aa), 68% identity in aa 1 - 344" /codon_start=1 /transl_table=11 /product="galactitol-1-phosphate dehydrogenase" /protein_id="NP_462174.1" /db_xref="GeneID:1254784" /translation="MKSVVIHAEGDVRVEERPLPQLQAEDDVLVKVVSSGLCGSDIPR IFAQGAHYYPITLGHEFSGYVESYGTGVTDMQPGDAVACVPLLPCFHCPQCERGYFSL CKQYQFVGSRSEGGNAEYVVVKRANLFRLPSDMPIEDGAFIEPITVGLHAFHLAQGCE GKNVIIVGAGTIGLLALQCARELGARSVTAIDINPQKLELAKALGATHTCNSREMTAD DIQTALSDIQFDQLVLETAGTPQTVSLAIDIAGPRAQLALVGTLHHDLTLTTRTFGLI LRKELTLLGSWMNYSAPWPGEEWETAARLLAEKRLQLTPLIAHRGDAESFAEAVKALN GAPMQGKILLQLS" misc_feature 3430322..3431362 /locus_tag="STM3261" /note="galactitol-1-phosphate 5-dehydrogenase; Region: PRK10309" /db_xref="CDD:182371" misc_feature order(3430433..3430441,3430448..3430450,3430751..3430753, 3430763..3430765,3430823..3430840,3430895..3430900, 3430910..3430912,3430955..3430957,3431027..3431032, 3431036..3431038,3431096..3431101,3431177..3431185) /locus_tag="STM3261" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176198" misc_feature order(3430433..3430435,3430439..3430441,3430496..3430498, 3430751..3430753) /locus_tag="STM3261" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176198" gene 3431463..3432249 /locus_tag="STM3262" /db_xref="GeneID:1254785" regulatory 3431463..3431468 /regulatory_class="ribosome_binding_site" /locus_tag="STM3262" /note="putative RBS for STM3262; RegulonDB:STMS1H003288" CDS 3431476..3432249 /locus_tag="STM3262" /note="similar to E. coli split galactitol utilization operon repressor, interrupted (AAC75148.1); Blastp hit to AAC75148.1 (148 aa), 77% identity in aa 1 - 148" /codon_start=1 /transl_table=11 /product="transcriptional regulator of sugar metabolism" /protein_id="NP_462175.1" /db_xref="GeneID:1254785" /translation="MNSFERRNKIVDLINTQGSVLVMDLSNTFGISEVTIRADLRLLE EKGLVTRFHGGAAKPGSHLAEGDNQEVILEDRYQLASDPKKRIAQAAAAMVEEGMTII LDSGSTTLLIAEALARKSNITVITNSLPAAFTLSENKDLTLVVCGGTVRHKTHSMHGT IAERSLHGISADLMFVGADGIDATNGITTFNEGYSISGVMAAAAHKVIAVLDATKFNR RGFNQVLPMDKIDCVITDDTISKQDKAALAKTGVELMIV" misc_feature 3431476..3432246 /locus_tag="STM3262" /note="DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]; Region: GlpR; COG1349" /db_xref="CDD:440960" gene complement(3432407..3433282) /gene="yraL" /locus_tag="STM3263" /db_xref="GeneID:1254786" CDS complement(3432407..3433270) /gene="yraL" /locus_tag="STM3263" /note="similar to E. coli orf, hypothetical protein (AAC76180.1); Blastp hit to AAC76180.1 (286 aa), 97% identity in aa 1 - 285" /codon_start=1 /transl_table=11 /product="putative methyltransferase" /protein_id="NP_462176.1" /db_xref="GeneID:1254786" /translation="MKQNESADNSQGQLFIVPTPIGNLADITQRALEVLQAVDLIAAE DTRHTGLLLQHFGINARLFALHDHNEQQKAETLVAKLKEGQNIALVSDAGTPLINDPG YHLVRTCREAGIRVVPLPGPCAAIAALSAAGLPSDRFCYEGFLPAKSKGRRDALKAIE TEPRTLIFYESTHRLLDSLEDIVAVLGESRYVVLARELTKTWETIHGAPVGELLAWVK EDENRRKGEMVLIVEGHKAQEDDLPADALRTLALLQAELPLKKAAALAAEIHGVKKNA LYKYALEQQEE" misc_feature complement(3432410..3433270) /gene="yraL" /locus_tag="STM3263" /note="SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional; Region: PRK14994" /db_xref="CDD:184956" misc_feature complement(order(3432656..3432658,3432662..3432664, 3432674..3432676,3432845..3432862,3432866..3432886, 3432890..3432895,3432905..3432913,3432917..3432928, 3432950..3432955,3432962..3432964,3432974..3432988, 3433172..3433174,3433181..3433198,3433202..3433204, 3433223..3433225)) /gene="yraL" /locus_tag="STM3263" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:381175" misc_feature complement(order(3432584..3432592,3432677..3432688, 3432764..3432769,3432842..3432844,3432887..3432889, 3432899..3432904,3432971..3432979,3432986..3432994, 3433052..3433054,3433208..3433210)) /gene="yraL" /locus_tag="STM3263" /note="putative active site [active]" /db_xref="CDD:381175" misc_feature complement(order(3432584..3432592,3432671..3432673, 3432677..3432682,3432686..3432688,3432761..3432766, 3432839..3432841,3432899..3432904,3432971..3432979, 3432986..3432994,3433208..3433210)) /gene="yraL" /locus_tag="STM3263" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:381175" regulatory complement(3433277..3433282) /regulatory_class="ribosome_binding_site" /gene="yraL" /locus_tag="STM3263" /note="putative RBS for yraL; RegulonDB:STMS1H003289" gene 3433323..3435376 /gene="yraM" /locus_tag="STM3264" /db_xref="GeneID:1254787" regulatory 3433323..3433328 /regulatory_class="ribosome_binding_site" /gene="yraM" /locus_tag="STM3264" /note="putative RBS for yraM; RegulonDB:STMS1H003290" CDS 3433334..3435376 /gene="yraM" /locus_tag="STM3264" /note="similar to E. coli putative glycosylase (AAC76181.1); Blastp hit to AAC76181.1 (678 aa), 80% identity in aa 1 - 678" /codon_start=1 /transl_table=11 /product="putative transglycosylase" /protein_id="NP_462177.1" /db_xref="GeneID:1254787" /translation="MVPSTFSRLNAARALPVVLAALLFAGCGTQAPDQSAAYMQGSAQ ADSAFYLHQMQQSADDSKTNWQLLAIHALLKEGKSQQAVDLFNQLPQNLNDTQRREQS LLAVEIKLAQKDVAGAQALLDKLKPADFAPNQQARYWQAQIVASQGRPSLTLLRALIA QEPLLAAKDKQKNIDATWQALSAMTPDQARTLVINADENVLQGWLDLQRVWFDNRNDP DMLKAGIADWQKRYPQNPGAKMLPTQLVNVQRFKPASTSKIALLLPLNGQAAVFGRTI QQGFEAAKNLGTQAVEMQPAAAPDAPVEPGVEETQPQMTNGVASPSQASVSDLTDDAP AQSATPVSAPQTPPATASAPADPSAELKIYDTSSQPLDQVLAQVQQDGASIVVGPLLK NNVEALMKSNTPLNVLALNQPETVRSFPNICYFALSPEDEARDAAHHIYDQGKQSPLL LIPRSALGDRVANAFTQEWQKLGGGIVLQQKFGSVAELKMGVNGGAGIALTGSPVAAS VPAQPGVTIGGLTIPAPPTDAQITGGGRVDAVYILATPEEIGFIKPMIAMRNGTQSGA TLYASSRSAQGTSGPDFRLEMEGLQYSEIPMLAGGNMPLMQQALSAVHNDYSLARMYA MGVDAWTLANHFSQMRQVQGFEINGNTGALTASPDCVINRKLSWLKYQQGEIVPAS" misc_feature 3433334..3435373 /gene="yraM" /locus_tag="STM3264" /note="Outer membrane lipoprotein LpoA, binds and activates PBP1a [Cell wall/membrane/envelope biogenesis]; Region: LpoA; COG3107" /db_xref="CDD:442341" misc_feature 3433529..3433609 /gene="yraM" /locus_tag="STM3264" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" misc_feature 3433628..3433714 /gene="yraM" /locus_tag="STM3264" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" misc_feature <3434195..>3434410 /gene="yraM" /locus_tag="STM3264" /note="cytoskeleton protein RodZ; Region: PRK10856" /db_xref="CDD:236776" gene 3435322..3435729 /gene="yraN" /locus_tag="STM3265" /db_xref="GeneID:1254788" regulatory 3435322..3435327 /regulatory_class="ribosome_binding_site" /gene="yraN" /locus_tag="STM3265" /note="putative RBS for yraN; RegulonDB:STMS1H003291" CDS 3435334..3435729 /gene="yraN" /locus_tag="STM3265" /note="similar to E. coli orf, hypothetical protein (AAC76182.1); Blastp hit to AAC76182.1 (131 aa), 83% identity in aa 1 - 131" /codon_start=1 /transl_table=11 /product="putative endonuclease" /protein_id="NP_462178.1" /db_xref="GeneID:1254788" /translation="MAQIPARGDCSRQLTRKQAGDAWEAAARRWLESKGLRFIAANVR ERGGEIDLIMRDGKTTVFVEVRYRRSGLYGGAAASVTRSKQHKLLHTARLWLARQNGS FDTVDCRFDVLAFTGNEIEWFRDAFNDHS" misc_feature 3435379..3435717 /gene="yraN" /locus_tag="STM3265" /note="TIGR00252 family protein; Region: TIGR00252" /db_xref="CDD:129354" gene 3435741..3436341 /gene="yraO" /locus_tag="STM3266" /db_xref="GeneID:1254789" regulatory 3435741..3435746 /regulatory_class="ribosome_binding_site" /gene="yraO" /locus_tag="STM3266" /note="putative RBS for yraO; RegulonDB:STMS1H003292" CDS 3435751..3436341 /gene="yraO" /locus_tag="STM3266" /note="similar to E. coli orf, hypothetical protein (AAC76183.1); Blastp hit to AAC76183.1 (196 aa), 98% identity in aa 3 - 196" /codon_start=1 /transl_table=11 /product="putative phosphoheptose isomerase" /protein_id="NP_462179.1" /db_xref="GeneID:1254789" /translation="MLERIKVCFTESIQTQIAAAEALPDAISRAAMTLVHSLLNGNKI LCCGNGTSAANAQHFAASMINRFETERPSLPAIALNTDNVVLTAIANDRLHDEVYAKQ VRALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVE IRIPSHHSARIQEMHMLTVNCLCDLIDNTLFPHQDD" misc_feature 3435751..3436338 /gene="yraO" /locus_tag="STM3266" /note="DnaA initiator-associating protein DiaA; Provisional; Region: PRK10886" /db_xref="CDD:182811" misc_feature order(3435784..3435786,3435796..3435798,3435832..3435834, 3435841..3435843,3435901..3435903,3435919..3435924, 3436264..3436269,3436279..3436281,3436288..3436290, 3436300..3436302,3436312..3436314) /gene="yraO" /locus_tag="STM3266" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:240139" misc_feature order(3435895..3435903,3436099..3436107,3436114..3436116, 3436252..3436254,3436264..3436266) /gene="yraO" /locus_tag="STM3266" /note="active site" /db_xref="CDD:240139" gene 3436340..3436926 /gene="yraP" /locus_tag="STM3267" /db_xref="GeneID:1254790" regulatory 3436340..3436345 /regulatory_class="ribosome_binding_site" /gene="yraP" /locus_tag="STM3267" /note="putative RBS for yraP; RegulonDB:STMS1H003293" CDS 3436351..3436926 /gene="yraP" /locus_tag="STM3267" /note="similar to E. coli putative periplasmic protein (AAC76184.1); Blastp hit to AAC76184.1 (191 aa), 92% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462180.1" /db_xref="GeneID:1254790" /translation="MKAFSPLAVLISALLLQGCVAAAVVGTAAVGTKAATDPRSVGTQ VDDGTLELRVSSALSKDEQIKKETRINVTAYQGKVLLVGQSPNSELSARAKQIAMGVE GTTEVYNEIRQGQPIGLGTASNDTWITTKVRSQLLTSDQVKSSNVKVTTENGEVFLLG LVTEREGKAAADIASRVSGVKRVTTAFTYIK" misc_feature 3436351..3436923 /gene="yraP" /locus_tag="STM3267" /note="divisome-associated lipoprotein YraP; Region: PRK11023" /db_xref="CDD:182907" gene complement(3436993..3437680) /gene="yraR" /locus_tag="STM3268" /db_xref="GeneID:1254791" CDS complement(3436993..3437661) /gene="yraR" /locus_tag="STM3268" /note="similar to E. coli orf, hypothetical protein (AAC76186.1); Blastp hit to AAC76186.1 (226 aa), 86% identity in aa 6 - 226" /codon_start=1 /transl_table=11 /product="putative nucleoside-diphosphate-sugar epimerase" /protein_id="NP_462181.1" /db_xref="GeneID:1254791" /translation="MQGGQICKGARMSQVLITGATGLVGGHLLRMLINTPQVSAIAAP TRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSKAAFIHADYTLV VDTALTGRRLGAQHMVVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSML LGDRTTRRVNETLFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLR EKAE" misc_feature complement(3437011..3437619) /gene="yraR" /locus_tag="STM3268" /note="A large family of proteins that share a Rossmann-fold NAD(P)H/NAD(P)(+) binding (NADB) domain. The NADB domain is found in numerous dehydrogenases of metabolic pathways such as glycolysis, and many other redox enzymes. NAD binding involves numerous...; Region: Rossmann-fold NAD(P)(+)-binding proteins; cl21454" /db_xref="CDD:473865" misc_feature complement(order(3437182..3437193,3437251..3437253, 3437263..3437265,3437296..3437304,3437416..3437424, 3437521..3437529,3437590..3437592,3437596..3437601, 3437605..3437607)) /gene="yraR" /locus_tag="STM3268" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:187560" misc_feature complement(order(3437251..3437253,3437263..3437265, 3437296..3437298,3437368..3437370)) /gene="yraR" /locus_tag="STM3268" /note="active site" /db_xref="CDD:187560" regulatory complement(3437675..3437680) /regulatory_class="ribosome_binding_site" /gene="yraR" /locus_tag="STM3268" /note="putative RBS for yraR; RegulonDB:STMS1H003294" gene 3437749..3438277 /gene="yhbO" /locus_tag="STM3269" /db_xref="GeneID:1254792" regulatory 3437749..3437754 /regulatory_class="ribosome_binding_site" /gene="yhbO" /locus_tag="STM3269" /note="putative RBS for yhbO; RegulonDB:STMS1H003295" CDS 3437759..3438277 /gene="yhbO" /locus_tag="STM3269" /note="similar to E. coli orf, hypothetical protein (AAC76187.1); Blastp hit to AAC76187.1 (186 aa), 94% identity in aa 15 - 186" /codon_start=1 /transl_table=11 /product="putative intracellular proteinase" /protein_id="NP_462182.1" /db_xref="GeneID:1254792" /translation="MSKKIAVLITDEFEDSEFTSPAAEFRQAGHEVITIEKEAGKTVK GKKGEASVTIDKAIDDVRPDEFDALLLPGGHSPDYLRGDSRFVDFTRDFVNSGKPVFA ICHGPQLLISADVIRGRKLTAVKPIIIDVKNAGAEFYDQEVVVDKDQLVTSRTPDDLP AFNREALRLLGA" misc_feature 3437768..3438265 /gene="yhbO" /locus_tag="STM3269" /note="A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus; Region: GATase1_PfpI_like; cd03134" /db_xref="CDD:153228" misc_feature 3438068..3438073 /gene="yhbO" /locus_tag="STM3269" /note="proposed catalytic triad [active]" /db_xref="CDD:153228" misc_feature 3438068..3438070 /gene="yhbO" /locus_tag="STM3269" /note="conserved cys residue [active]" /db_xref="CDD:153228" gene complement(3438257..3438710) /gene="yhbP" /locus_tag="STM3270" /db_xref="GeneID:1254793" CDS complement(3438257..3438700) /gene="yhbP" /locus_tag="STM3270" /note="similar to E. coli orf, hypothetical protein (AAC76188.1); Blastp hit to AAC76188.1 (147 aa), 83% identity in aa 1 - 147" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462183.1" /db_xref="GeneID:1254793" /translation="MDTLTAIGRWLAKQHVVTWCVHHEGELWCANAFYLFDAQNVALY LLTDDKTRHAQMSGACAPVAGTVNGQPKTVARIRGVQFKGEIRRLEGQESDAARKAYL RRFPVARVLPAPVWEIRLDEIKFTDNTLGFGKKLHWLRDSRAQQA" misc_feature complement(3438278..3438700) /gene="yhbP" /locus_tag="STM3270" /note="hypothetical protein; Provisional; Region: PRK03467" /db_xref="CDD:235127" regulatory complement(3438705..3438710) /regulatory_class="ribosome_binding_site" /gene="yhbP" /locus_tag="STM3270" /note="putative RBS for yhbP; RegulonDB:STMS1H003296" gene 3438718..3439055 /gene="yhbQ" /locus_tag="STM3271" /db_xref="GeneID:1254794" regulatory 3438718..3438723 /regulatory_class="ribosome_binding_site" /gene="yhbQ" /locus_tag="STM3271" /note="putative RBS for yhbQ; RegulonDB:STMS1H003297" CDS 3438738..3439055 /gene="yhbQ" /locus_tag="STM3271" /note="similar to E. coli orf, hypothetical protein (AAC76189.1); Blastp hit to AAC76189.1 (100 aa), 81% identity in aa 1 - 100" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462184.3" /db_xref="GeneID:1254794" /translation="MLMATMTPWYLYLIRTADNALYTGITTDVARRYRQHQTGKGAKA LRGKGELTLAFAAQVGDRSLALRIEYRIKQLTKRQKERLVTEREAFEALLSSLQTPVL KND" misc_feature 3438744..3439001 /gene="yhbQ" /locus_tag="STM3271" /note="GIY-YIG nuclease superfamily protein; Validated; Region: PRK00329" /db_xref="CDD:178979" misc_feature order(3438765..3438773,3438801..3438809) /gene="yhbQ" /locus_tag="STM3271" /note="GIY-YIG motif/motif A; other site" /db_xref="CDD:198403" misc_feature order(3438771..3438773,3438801..3438803,3438807..3438809, 3438831..3438833,3438843..3438845,3438942..3438944) /gene="yhbQ" /locus_tag="STM3271" /note="putative active site [active]" /db_xref="CDD:198403" misc_feature 3438942..3438944 /gene="yhbQ" /locus_tag="STM3271" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:198403" gene complement(3439042..3439555) /gene="yhbS" /locus_tag="STM3272" /db_xref="GeneID:1254795" CDS complement(3439042..3439545) /gene="yhbS" /locus_tag="STM3272" /note="membrane; similar to E. coli orf, hypothetical protein (AAC76190.1); Blastp hit to AAC76190.1 (167 aa), 96% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="putative ABC superfamily transport protein" /protein_id="NP_462185.1" /db_xref="GeneID:1254795" /translation="MLIRVEIPIDAPGIDALLRRSFESDAEAKLVHDLREDGFLTLGL VATDDEGQVVGYVAFSPVDVQGEDLQWVGMAPLAVDEKYRGQGLARQLVYEGLDSLNE FGYAAVVTLGDPALYSRFGFELAAHYDLHCRWPGTESAFQVHRLAEDALEGVTGLVEY HDHFNRF" misc_feature complement(3439108..3439539) /gene="yhbS" /locus_tag="STM3272" /note="Predicted N-acetyltransferase YhbS [General function prediction only]; Region: yhbS; COG3153" /db_xref="CDD:442387" gene complement(3439539..3440078) /gene="yhbT" /locus_tag="STM3273" /db_xref="GeneID:1254796" CDS complement(3439539..3440063) /gene="yhbT" /locus_tag="STM3273" /note="similar to E. coli orf, hypothetical protein (AAC76191.1); Blastp hit to AAC76191.1 (174 aa), 90% identity in aa 1 - 174" /codon_start=1 /transl_table=11 /product="putative lipid carrier protein" /protein_id="NP_462186.1" /db_xref="GeneID:1254796" /translation="MLDKLRSRLVHAGPSLMSVPVKLTPFALKRQVLEQVLSWQFRQA LADGELEFLEGRWLSIHVRDIDLKWYTTVENEKLIVSQQADADVSFSADASDLLMIAA RKQDPDTLFFQRRLVIEGDTELGLYVKNLMDAIELEQMPKALRVMLLQLADFVEAGMK NSPETKQTSVGEPC" misc_feature complement(3439569..3440045) /gene="yhbT" /locus_tag="STM3273" /note="Ubiquinone biosynthesis accessory factor UbiT, lipid carrier SCP2 domain [Coenzyme transport and metabolism]; Region: UbiT; COG3154" /db_xref="CDD:442388" regulatory complement(3439550..3439555) /regulatory_class="ribosome_binding_site" /gene="yhbS" /locus_tag="STM3272" /note="putative RBS for yhbS; RegulonDB:STMS1H003298" regulatory complement(3440073..3440078) /regulatory_class="ribosome_binding_site" /gene="yhbT" /locus_tag="STM3273" /note="putative RBS for yhbT; RegulonDB:STMS1H003299" gene 3440269..3441275 /gene="yhbU" /locus_tag="STM3274" /db_xref="GeneID:1254797" regulatory 3440269..3440274 /regulatory_class="ribosome_binding_site" /gene="yhbU" /locus_tag="STM3274" /note="putative RBS for yhbU; RegulonDB:STMS1H003300" CDS 3440280..3441275 /gene="yhbU" /locus_tag="STM3274" /EC_number="3.4.-.-" /note="similar to E. coli putative collagenase (AAC76192.1); Blastp hit to AAC76192.1 (331 aa), 96% identity in aa 1 - 331" /codon_start=1 /transl_table=11 /product="putative protease" /protein_id="NP_462187.1" /db_xref="GeneID:1254797" /translation="MELLCPAGNLPALKAAIENGADAVYIGLKDDTNARHFAGLNFTE KKLQEAVSFVHQHRRKLHIAINTFAHPDGYARWQRAVDMAAQLGADALILADLAMLEY AAERYPHIERHVSVQASATNEEAIRFYHRNFDVHRVVLPRVLSIHQVKQLARVTPVPL EVFAFGSLCIMAEGRCYLSSYLTGESPNTVGACSPARFVRWQQTPQGLESRLNDVLID RYQDGENAGYPTLCKGRYLVDGERYHALEEPTSLNTLELLPELMAANIASVKIEGRQR SPAYVSQVAKVWRQAIDRCKAAPQNFVPQRDWMETLGAMSEGTQTTLGAYHRKWQ" misc_feature 3440280..3441263 /gene="yhbU" /locus_tag="STM3274" /note="23S rRNA C2501 and tRNA U34 5'-hydroxylation protein RlhA/YrrN/YrrO, U32 peptidase family [Translation, ribosomal structure and biogenesis]; Region: RlhA; COG0826" /db_xref="CDD:440588" gene 3441247..3442162 /gene="yhbV" /locus_tag="STM3275" /db_xref="GeneID:1254798" regulatory 3441247..3441252 /regulatory_class="ribosome_binding_site" /gene="yhbV" /locus_tag="STM3275" /note="putative RBS for yhbV; RegulonDB:STMS1H003301" CDS 3441266..3442162 /gene="yhbV" /locus_tag="STM3275" /note="similar to E. coli orf, hypothetical protein (AAC76193.1); Blastp hit to AAC76193.1 (298 aa), 91% identity in aa 1 - 298" /codon_start=1 /transl_table=11 /product="putative protease" /protein_id="NP_462188.3" /db_xref="GeneID:1254798" /translation="MAVRGAMKYSLGPVLYYWPKETLEDFYQQAAKSSADVIYLGEAV CSKRRATKVGDWLEMAKSLAASGKQVVLSTLALVQASSELSELKRYVDNGDFLLEASD LGVVNLCAERKLPFVAGHALNCYNAVTLRRLLKEGMVRWCMPVELSRDWLVNLLNQCD ELGIRNQFEVEVLSYGHLPLAYSARCFTARSEDRPKDECETCCIKYPNGRDVLSQENQ QVFVLNGIQTMSGYVYNLGNELTSMQGLVDIVRLSPLGTETFAMLDAFRANENGGAPL PLAAHSDCNGYWKRLAGLELQA" misc_feature 3441284..3442159 /gene="yhbV" /locus_tag="STM3275" /note="putative protease; Provisional; Region: PRK15447" /db_xref="CDD:237968" gene 3442340..3443347 /gene="yhbW" /locus_tag="STM3276" /db_xref="GeneID:1254799" CDS 3442340..3443347 /gene="yhbW" /locus_tag="STM3276" /note="similar to E. coli putative enzyme (AAC76194.1); Blastp hit to AAC76194.1 (335 aa), 95% identity in aa 1 - 335" /codon_start=1 /transl_table=11 /product="putative alkanal monooxygenase" /protein_id="NP_462189.1" /db_xref="GeneID:1254799" /translation="MTDKTIPFSVLDLAPIPEGSSAKEAFTHSLDLARLAEKRGYHRY WLAEHHNMTGIASAATSVLIGYLAANTTTLHLGSGGVMLPNHSPLVIAEQFGTLNTLY PGRIDLGLGRAPGSDQSTMRALRRHMSGDIDNFPRDVAELVDWFDARDPNPHVRPVPG YGEQIPVWLLGSSLYSAQLAAQLGLPFAFASHFAPDMLFQALHLYRTQFKPSARLEKP YAMVCINIIAADSNRDAEFLFTSMQQAFVKLRRGETGQLPPPIENMETFRSPSEQYGV QQALSMSLVGDKAKVRHGLESILRETQADEIMVNGQIFDHQARLHSFDLAMDVKEELL G" misc_feature 3442340..3443338 /gene="yhbW" /locus_tag="STM3276" /note="luciferase-like monooxygenase; Region: PRK10508" /db_xref="CDD:182505" gene complement(3443325..3444050) /locus_tag="STM3277" /db_xref="GeneID:1254800" CDS complement(3443325..3444044) /locus_tag="STM3277" /note="similar to E. coli orf, hypothetical protein (AAC73328.1); Blastp hit to AAC73328.1 (246 aa), 51% identity in aa 30 - 224" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462190.1" /db_xref="GeneID:1254800" /translation="MGRKGLLAIVLLSLFIAFILKFFWLTPYDEDVYLPVEKPVASSL KIIHPGDQLFIRILKAEDKLELWASANNKPYKLYKTWTICAWSGGLGPKHKQGDGKSP EGFYATNKGLLNPNSRYHLAFNIGYPNAYDRANGYTGDFIMVHGNCVSAGCYAMTDAG IEEIYQLVAQALNSGQKSVPVHIFPFTMNDENMRQAQAWPEYNFWRMLKPGYDYFEKN RRLPTITVENRRYKISPTTLP" misc_feature complement(3443490..3443909) /locus_tag="STM3277" /note="Murein L,D-transpeptidase YafK [Cell wall/membrane/envelope biogenesis]; Region: YafK; COG3034" /db_xref="CDD:442269" regulatory complement(3444045..3444050) /regulatory_class="ribosome_binding_site" /locus_tag="STM3277" /note="putative RBS for STM3277; RegulonDB:STMS1H003302" gene 3444199..3444733 /locus_tag="STM3278" /db_xref="GeneID:1254801" regulatory 3444199..3444204 /regulatory_class="ribosome_binding_site" /locus_tag="STM3278" /note="putative RBS for STM3278; RegulonDB:STMS1H003303" CDS 3444203..3444733 /locus_tag="STM3278" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462191.1" /db_xref="GeneID:1254801" /translation="MSEPASFFLHAHITESNLKKFFHSPATNIKDYDDWLPWFTEEQR LYGDPAKMLNNLATCNSGESEKNIYAEHINFNKETQIVTMDHIFLSESYEIFMPLMAC VRGIEKFITPGENNFALIYYYWWGSEIAIALEFDANGSRITANPKAENLTIADAFFDE HGEALAEELYNKQGFI" gene complement(3444794..3446123) /gene="mtr" /locus_tag="STM3279" /db_xref="GeneID:1254802" CDS complement(3444794..3446038) /gene="mtr" /locus_tag="STM3279" /note="similar to E. coli tryptophan-specific transport protein (AAC76195.1); Blastp hit to AAC76195.1 (414 aa), 94% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="HAAAP family tryptophan-specific transport protein" /protein_id="NP_462192.1" /db_xref="GeneID:1254802" /translation="MATLTTTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWS MAALVFTWFCMLHSGLMILEANLNYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYIL TYAYISASGSILHHTFAEMSLNVPARAAGFAFALLVAFVVWLSTKAVSRMTAIVLGAK VITFFLTFGSLLGHVQPATLFNVAESHASYTPYLLMTLPFCLASFGYHGNVPSLMKYY GKDPRTIVKCLIYGTLLALALYSVWLLGTMGNIPRPEFIGIAQKGGNIDVLVQALSGV LNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDSAMGRFKTALLTFLPPM IGGLLYPNGFLYAIGYAGLAATIWAAIVPALLARKSRERFGSPKFRVWGGKPMIVLIL LFGVGNALVHILSSFNLLPVYQ" misc_feature complement(3444797..3446038) /gene="mtr" /locus_tag="STM3279" /note="tryptophan permease; Provisional; Region: PRK10483" /db_xref="CDD:182492" regulatory complement(3446049..3446054) /regulatory_class="ribosome_binding_site" /gene="mtr" /locus_tag="STM3279" /note="putative RBS for mtr; RegulonDB:STMS1H003304" protein_bind complement(3446096..3446110) /gene="mtr" /locus_tag="STM3279" /note="putative binding site for TrpR, RegulonDB: STMS1H000375" /bound_moiety="TrpR" regulatory complement(3446096..3446104) /regulatory_class="minus_10_signal" /gene="mtr" /locus_tag="STM3279" /note="putative -10_signal for mtr; RegulonDB:STMLTH004584" regulatory complement(3446115..3446123) /regulatory_class="minus_35_signal" /gene="mtr" /locus_tag="STM3279" /note="putative -35_signal for mtr; RegulonDB:STMLTH004584" protein_bind complement(3446149..3446165) /note="putative binding site for TyrR, RegulonDB: STMS1H000383" /bound_moiety="TyrR" gene complement(3446192..3448132) /gene="deaD" /locus_tag="STM3280" /db_xref="GeneID:1254803" CDS complement(3446192..3448132) /gene="deaD" /locus_tag="STM3280" /note="similar to E. coli inducible ATP-independent RNA helicase (AAC76196.1); Blastp hit to AAC76196.1 (646 aa), 97% identity in aa 1 - 646" /codon_start=1 /transl_table=11 /product="cysteine sulfinate desulfinase" /protein_id="NP_462193.3" /db_xref="GeneID:1254803" /translation="MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALTDLGYE KPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRE LAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG TLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRF MKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATL EVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV VNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNIERTMKLTIPEVELPN AELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPSAEGEELDLETLAAALLKMAQ GERPLILPPDAPMRPKREFRDRDDRGPRDRNDRGPRGDREERPRRERRDVGDMQLYRI EVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGMPGEVLQHFTRTR ILNKPMNMQLLGDAVPHAGGERRGGGRSFSGERREGGRNFSGERREGGRGDGRRFSGE RRESRGPRRDDSTGRRRFGGDA" misc_feature complement(3446195..3448081) /gene="deaD" /locus_tag="STM3280" /note="ATP-dependent RNA helicase DeaD; Provisional; Region: PRK11634" /db_xref="CDD:236941" gene complement(3448260..3449151) /gene="nlpI" /locus_tag="STM3281" /db_xref="GeneID:1254804" CDS complement(3448260..3449144) /gene="nlpI" /locus_tag="STM3281" /note="similar to E. coli putative control proteins (AAC76197.1); Blastp hit to AAC76197.1 (294 aa), 96% identity in aa 1 - 294" /codon_start=1 /transl_table=11 /product="lipoprotein, cell division" /protein_id="NP_462194.1" /db_xref="GeneID:1254804" /translation="MKPFLRWCFVATALTLAGCSNSAWRKSEVLAVPLQPTLQQEVIL ARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYL GIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD PNDPYRSLWLYLVEQKLNEKQAKEALKARFEKSDKEQWGWNIVEFYLGDISEATLMER LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALL ELSLLGQDQDDLAESDQQ" misc_feature complement(3448263..3449144) /gene="nlpI" /locus_tag="STM3281" /note="lipoprotein NlpI; Provisional; Region: PRK11189" /db_xref="CDD:236875" misc_feature complement(3448875..3448961) /gene="nlpI" /locus_tag="STM3281" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(order(3448719..3448721,3448728..3448733, 3448740..3448745,3448752..3448754,3448821..3448826, 3448830..3448835,3448842..3448847,3448854..3448856, 3448926..3448928,3448932..3448937,3448944..3448949, 3448956..3448958)) /gene="nlpI" /locus_tag="STM3281" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature complement(3448770..3448862) /gene="nlpI" /locus_tag="STM3281" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(3448686..3448757) /gene="nlpI" /locus_tag="STM3281" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" regulatory complement(3449146..3449151) /regulatory_class="ribosome_binding_site" /gene="nlpI" /locus_tag="STM3281" /note="putative RBS for nlpI; RegulonDB:STMS1H003305" gene complement(3449254..3451401) /gene="pnp" /locus_tag="STM3282" /db_xref="GeneID:1254805" CDS complement(3449254..3451389) /gene="pnp" /locus_tag="STM3282" /EC_number="2.7.7.8" /note="member of mRNA degradosome; similar to E. coli polynucleotide phosphorylase; cytidylate kinase activity (AAC76198.1); Blastp hit to AAC76198.1 (734 aa), 97% identity in aa 24 - 734" /codon_start=1 /transl_table=11 /product="polynucleotide phosphorylase" /protein_id="NP_462195.1" /db_xref="GeneID:1254805" /translation="MLNPIVRKFQYGQHTVTLETGMMARQATAAVMVSMDDTAVFVTV VGQKKAKPGQDFFPLTVNYQERTYAAGRIPGSFFRREGRPSEGETLIARLIDRPVRPL FPEGFVNEVQVIATVVSVNPQVNPDIVAMIGASAALSLSGIPFNGPIGAARVGYINDQ YVLNPTQDELKESKLDLVVAGTEAAVLMVESEAELLSEDTMLGAVVFGHEQQQVVIQA INDLVKEAGKPRWDWQPEAVNDALNARVAALAESRLSDAYRITDKQERYAQVDVIKSE TIEQLIAEDETLDANELGEILHAIEKNVVRSRVLAGEPRIDGREKDMIRGLDVRTGVL PRTHGSALFTRGETQALVTATLGTARDAQVLDELMGERTDSFLFHYNFPPYSVGETGM VGSPKRREIGHGRLAKRGVLAVMPDMDKFPYTVRVVSEITESNGSSSMASVCGASLAL MDAGVPIKAAVAGIAMGLVKEGDNYVVLSDILGDEDHLGDMDFKVAGSRDGISALQMD IKIEGITKEIMQVALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKISTDKIK DVIGKGGSVIRALTEETGTTIEIEDDGTVKIAATDGEKAKYAIRRIEEITAEIEVGRI YNGKVTRIVDFGAFVAIGGGKEGLVHISQIADKRVEKVTDYLQMGQEVPVKVLEVDRQ GRVRLSIKEATEQSQPAAAPEAPASEQAE" misc_feature complement(3449314..3451389) /gene="pnp" /locus_tag="STM3282" /note="polynucleotide phosphorylase/polyadenylase; Provisional; Region: PRK11824" /db_xref="CDD:236995" regulatory complement(3451396..3451401) /regulatory_class="ribosome_binding_site" /gene="pnp" /locus_tag="STM3282" /note="putative RBS for pnp; RegulonDB:STMS1H003306" gene complement(3451631..3451913) /gene="rpsO" /locus_tag="STM3283" /db_xref="GeneID:1254806" CDS complement(3451631..3451900) /gene="rpsO" /locus_tag="STM3283" /note="similar to E. coli 30S ribosomal subunit protein S15 (AAC76199.1); Blastp hit to AAC76199.1 (89 aa), 97% identity in aa 1 - 89" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S15" /protein_id="NP_462196.1" /db_xref="GeneID:1254806" /translation="MSLSTEATAKIVSEFGRDANDTGSTDVQVALLTAQINHLQGHFA EHKKDHHSRRGLLRMVSQRRKLLDYLKRKDVARYTALIERLGLRR" misc_feature complement(3451634..3451900) /gene="rpsO" /locus_tag="STM3283" /note="30S ribosomal protein S15; Reviewed; Region: rpsO; PRK05626" /db_xref="CDD:180170" misc_feature complement(order(3451694..3451696,3451706..3451708, 3451745..3451750,3451754..3451759,3451763..3451765, 3451775..3451777,3451784..3451786,3451796..3451798, 3451817..3451819,3451826..3451828,3451877..3451879)) /gene="rpsO" /locus_tag="STM3283" /note="16S/18S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:238213" misc_feature complement(order(3451649..3451651,3451661..3451663, 3451781..3451783,3451790..3451792,3451799..3451804, 3451811..3451813)) /gene="rpsO" /locus_tag="STM3283" /note="S13e-L30e interaction site [polypeptide binding]; other site" /db_xref="CDD:238213" misc_feature complement(order(3451643..3451648,3451709..3451711, 3451721..3451723)) /gene="rpsO" /locus_tag="STM3283" /note="25S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:238213" regulatory complement(3451908..3451913) /regulatory_class="ribosome_binding_site" /gene="rpsO" /locus_tag="STM3283" /note="putative RBS for rpsO; RegulonDB:STMS1H003307" gene complement(3452051..3453006) /gene="truB" /locus_tag="STM3284" /db_xref="GeneID:1254807" CDS complement(3452051..3452995) /gene="truB" /locus_tag="STM3284" /EC_number="4.2.1.70" /note="similar to E. coli tRNA pseudouridine 5S synthase (AAC76200.1); Blastp hit to AAC76200.1 (314 aa), 93% identity in aa 1 - 314" /codon_start=1 /transl_table=11 /product="tRNA pseudouridine 5S synthase" /protein_id="NP_462197.1" /db_xref="GeneID:1254807" /translation="MSRPRRRGRDIHGVLLLDKPQGMSSNDVLQKVKRIYNANRAGHT GALDPLATGMLPICLGEATKFSQYLLDSDKRYRVIARLGQRTDTSDADGQIVQERPVT FSAEQLASALETFRGDIEQIPSMYSALKYQGKKLYEYARQGIEVPREARPITVYELLF IRHEGNELELEVHCSKGTYIRTIIDDLGEKLGCGAHVTYLRRLTVSKYPVDRMVTLEH LQTLVAQAEQQGVPAAQLLDPLLMPMDSPASDYPVVNLPLTSSVYFKNGNPVRTTGAP LKGLVRVTEGEDDKFIGMGEIDDEGRVAPRRLVVEYPA" misc_feature complement(3452063..3452959) /gene="truB" /locus_tag="STM3284" /note="tRNA U55 pseudouridine synthase TruB, may also work on U342 of tmRNA [Translation, ribosomal structure and biogenesis]; Region: TruB; COG0130" /db_xref="CDD:439900" gene complement(3452995..3453410) /gene="rbfA" /locus_tag="STM3285" /db_xref="GeneID:1254808" CDS complement(3452995..3453396) /gene="rbfA" /locus_tag="STM3285" /note="role in processing of 10S rRNA; similar to E. coli ribosome-binding factor A (AAC76201.1); Blastp hit to AAC76201.1 (133 aa), 97% identity in aa 1 - 133" /codon_start=1 /transl_table=11 /product="ribosome-binding factor" /protein_id="NP_462198.1" /db_xref="GeneID:1254808" /translation="MAKEFGRPQRVAQEMQKEIAIILQREIKDPRLGMMTTVSGVEMS RDLAYAKVFVTFLNDKDEDAVKAGIKALQEASGFIRSLLGKAMRLRIVPELTFFYDNS LVEGMRMSNLVTNVVKHDEERRVNPDDSKED" misc_feature complement(3453028..3453396) /gene="rbfA" /locus_tag="STM3285" /note="30S ribosome-binding factor RbfA; Region: rbfA; PRK00521" /db_xref="CDD:234787" regulatory complement(3453001..3453006) /regulatory_class="ribosome_binding_site" /gene="rbfA" /locus_tag="STM3285" /note="putative RBS for truB; RegulonDB:STMS1H003308" regulatory complement(3453405..3453410) /regulatory_class="ribosome_binding_site" /gene="rbfA" /locus_tag="STM3285" /note="putative RBS for rbfA; RegulonDB:STMS1H003309" gene complement(3453617..3456309) /gene="infB" /locus_tag="STM3286" /db_xref="GeneID:1254809" CDS complement(3453617..3456295) /gene="infB" /locus_tag="STM3286" /note="translation initiation factor IF-2. (SW:IF2_SALTY)" /codon_start=1 /transl_table=11 /product="protein chain initiation factor IF-2" /protein_id="NP_462199.1" /db_xref="GeneID:1254809" /translation="MTDVTLKALAAERQVSVDRLVQQFADAGIRKSADDSVSAQEKQT LLAHLNREAVSGPDKLTLQRKTRSTLNIPGTGGKSKSVQIEVRKKRTFVKRDPQEAER LAAEEQAQREAEEQARREAEEQAKREAQQKAEREAAEQAKREAAEKAKREAAEKDKVS NQQTDDMTKTAQAEKARRENEAAELKRKAEEEARRKLEEEARRVAEEARRMAEENKWT ATPEPVEDTSDYHVTTSQHARQAEDENDREVEGGRGRGRNAKAARPAKKGKHAESKAD REEARAAVRGGKGGKRKGSSLQQGFQKPAQAVNRDVVIGETITVGELANKMAVKGSQV IKAMMKLGAMATINQVIDQETAQLVAEEMGHKVILRRENELEEAVMSDRDTGAAAEPR APVVTIMGHVDHGKTSLLDYIRSTKVASGEAGGITQHIGAYHVETDNGMITFLDTPGH AAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAGVPVVVAVNKIDKPEAD PDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILLQAEVLELKAVRKGM ASGAVIESFLDKGRGPVATVLVREGTLHKGDIVLCGFEYGRVRAMRNELGQEVLEAGP SIPVEILGLSGVPAAGDEVTVVRDEKKAREVALYRQGKFREVKLARQQKSKLENMFAN MTEGEVHEVNIVLKADVQGSVEAISDSLLKLSTDEVKVKIIGSGVGGITETDATLAAA SNAILVGFNVRADASARKVIESESLDLRYYSVIYNLIDEVKAAMSGMLSPELKQQIIG LAEVRDVFKSPKFGAIAGCMVTEGTIKRHNPIRVLRDNVVIYEGELESLRRFKDDVNE VRNGMECGIGVKNYNDVRVGDMIEVFEIIEIQRTIA" misc_feature complement(3455459..>3456277) /gene="infB" /locus_tag="STM3286" /note="MAEBL; Provisional; Region: PTZ00121" /db_xref="CDD:173412" misc_feature complement(3456011..3456127) /gene="infB" /locus_tag="STM3286" /note="Bacterial translation initiation factor IF-2 associated region; Region: IF2_assoc; pfam08364" /db_xref="CDD:429947" misc_feature complement(3455198..3455350) /gene="infB" /locus_tag="STM3286" /note="Translation initiation factor IF-2, N-terminal region; Region: IF2_N; pfam04760" /db_xref="CDD:428110" misc_feature complement(3453623..3455128) /gene="infB" /locus_tag="STM3286" /note="Translation initiation factor IF-2, a GTPase [Translation, ribosomal structure and biogenesis]; Region: InfB; COG0532" /db_xref="CDD:440298" regulatory complement(3456304..3456309) /regulatory_class="ribosome_binding_site" /gene="infB" /locus_tag="STM3286" /note="putative RBS for infB; RegulonDB:STMS1H003310" gene complement(3456320..3457839) /gene="nusA" /locus_tag="STM3287" /db_xref="GeneID:1254810" CDS complement(3456320..3457822) /gene="nusA" /locus_tag="STM3287" /note="transcription pausing; N utilization substance protein A (NUSA protein). (SW:NUSA_SALTY)" /codon_start=1 /transl_table=11 /product="L factor" /protein_id="NP_462200.1" /db_xref="GeneID:1254810" /translation="MNKEILAVVEAVSNEKALPREKIFEALESALATATKKKYEQEID VRVEIDRKSGDFDTFRRWLIVEEVTMPTKEITLEAARFEDESLNVGDYVEDQIESVTF DRITTQTAKQVIVQKVREAERAMVVDQFRDQEGEIVTGVVKKVNRDNISLEIKSEGMA GNAEAVILREDMLPRENFRPGDRIRGVLYAVRPEARGAQLFVTRSKPEMLIELFRIEV PEIGEEVIEIKAAARDPGSRAKIAVKTNDKRIDPVGACVGMRGARVQAVSTELGGERI DIVLWDDNPAQFVINAMAPADVASIVVDEDKHTMDIAVEAGNLAQAIGRNGQNVRLAS QLSGWELNVMTVDDLQAKHQAEAHAAIEIFTKYLDIDEEFATVLVEEGFSTLEELAYV PMKELLEIDGLDEPTVEALRERAKNALATLAQDQEASLGDNKPADDLLNLEGLDRDMA FKLAARGVCTLEDLADQGIDDLADIEGLTDEKAGELIMAARNICWFGDEA" misc_feature complement(3456380..3457822) /gene="nusA" /locus_tag="STM3287" /note="transcription elongation factor NusA; Validated; Region: nusA; PRK09202" /db_xref="CDD:236410" regulatory complement(3457834..3457839) /regulatory_class="ribosome_binding_site" /gene="nusA" /locus_tag="STM3287" /note="putative RBS for nusA; RegulonDB:STMS1H003311" gene complement(3457850..3458272) /gene="yhbC" /locus_tag="STM3288" /db_xref="GeneID:1254811" CDS complement(3457850..3458272) /gene="yhbC" /locus_tag="STM3288" /note="similar to E. coli orf, hypothetical protein (AAC76204.1); Blastp hit to AAC76204.1 (152 aa), 95% identity in aa 13 - 152" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462201.3" /db_xref="GeneID:1254811" /translation="MITAPVEALGYELVGIEFIRGRTSTLRIYIDSEDGINVDDCADV SHQVSAVLDVEDPISVAYNLEVSSPGLDRPMFTADHYARFQGEEVALVLRMAVQNRRK WQGIIKAVDGEMITVTVEGKDEVFALSNIQKANLVPHF" misc_feature complement(3457853..3458272) /gene="yhbC" /locus_tag="STM3288" /note="Sm and related proteins; Region: Sm_like; cl00259" /db_xref="CDD:469694" misc_feature complement(order(3457868..3457885,3457889..3457894, 3457898..3457903,3457925..3457927,3457946..3457948, 3457964..3457966,3457970..3457972,3457991..3457993, 3457997..3457999)) /gene="yhbC" /locus_tag="STM3288" /note="putative oligomer interface [polypeptide binding]; other site" /db_xref="CDD:212481" misc_feature complement(order(3457892..3457894,3457934..3457936, 3457940..3457942)) /gene="yhbC" /locus_tag="STM3288" /note="putative RNA binding site [nucleotide binding]; other site" /db_xref="CDD:212481" gene complement(3458513..3458586) /gene="metY" /locus_tag="STM3289" /db_xref="GeneID:1254812" tRNA complement(3458513..3458586) /gene="metY" /locus_tag="STM3289" /product="tRNA-Met" /db_xref="GeneID:1254812" gene 3458864..3460273 /gene="argG" /locus_tag="STM3290" /db_xref="GeneID:1254813" CDS 3458864..3460273 /gene="argG" /locus_tag="STM3290" /EC_number="6.3.4.5" /note="similar to E. coli argininosuccinate synthetase (AAC76205.1); Blastp hit to AAC76205.1 (447 aa), 96% identity in aa 1 - 447" /codon_start=1 /transl_table=11 /product="argininosuccinate synthetase" /protein_id="NP_462202.3" /db_xref="GeneID:1254813" /translation="MHKNALKQKPISLSVNQAGFYSMTTILKHLPAGQRIGIAFSGGL DTSAALLWMRQKGAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRKQLVAE GIAAIQCGAFHNTTGGLTYFNTTPLGRAVTGTMLVAAMKEDGVNIWGDGSTYKGNDIE RFYRYGLLTNAELQIYKPWLDTDFIDELGGRHEMSEFMIACGFDYKMSVEKAYSTDSN MLGATHEAKDLEFLNSSVKIVNPIMGVKFWDESVKIPAEVVTVRFEQGHPVALNGKTF SDDVEMMLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLLTGIH NEDTIEQYHSHGRQLGKLLYQGRWFDSQALMLRDGLQRWVASQITGEVTLELRRGNDY SILNTVSDNLTYKAERLTMEKGESVFSPDDRIGQLTMRNLDITDTREKLFGYAKAGLL TASSATGLPQVENLENKGK" misc_feature 3458930..3460267 /gene="argG" /locus_tag="STM3290" /note="argininosuccinate synthase; Validated; Region: PRK05370" /db_xref="CDD:235434" gene complement(3460359..3461430) /locus_tag="STM3291" /db_xref="GeneID:1254814" CDS complement(3460359..3461423) /locus_tag="STM3291" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462203.1" /db_xref="GeneID:1254814" /translation="MSLFFDRAGLIAELRTSNLSSAIQEKVVQQARAAIAFKRCLRDM ETVKVGASRLGGLPDWPLGQSWPIRKKSVNATSRVLKLKAEKTRNARFVHEMKMSYEL LNEGRKLLGQPAEDFDEEKYRLVQQRLLTEIDIRIENQLVDFPLAFVAQLNLSDLALL PGFDPLLPRRGLLSFFVDVTWEDRQPFVFWHDVEVDTLSTLAVPDDLLAFYNKIEFRE PWQLCTQVECLEPLSVISVSSVCEGLSVTQQKAYESWYDALSDYEQDNPYRVDACYSG DLLGGWTIPLQRSVEDELNQNDTRWRQLFSWDEEIHSTTALLAVAGPDFGGGIDYIMM TEKDMAAQCFDRVRNVVQLD" misc_feature complement(3460383..3461270) /locus_tag="STM3291" /note="Domain of unknown function (DUF1963); Region: DUF1963; cl01600" /db_xref="CDD:470264" regulatory complement(3461425..3461430) /regulatory_class="ribosome_binding_site" /locus_tag="STM3291" /note="putative RBS for STM3291; RegulonDB:STMS1H003312" gene complement(3461762..3461845) /gene="leuU" /locus_tag="STM3292" /db_xref="GeneID:1254815" tRNA complement(3461762..3461845) /gene="leuU" /locus_tag="STM3292" /product="tRNA-Leu" /db_xref="GeneID:1254815" gene complement(3461859..3462207) /gene="secG" /locus_tag="STM3293" /db_xref="GeneID:1254816" CDS complement(3461859..3462191) /gene="secG" /locus_tag="STM3293" /note="auxillary membrane component; similar to E. coli protein export - membrane protein (AAC76207.1); Blastp hit to AAC76207.1 (110 aa), 98% identity in aa 1 - 109" /codon_start=1 /transl_table=11 /product="preprotein translocase IISP family protein" /protein_id="NP_462204.1" /db_xref="GeneID:1254816" /translation="MYEALLVVFLIVAIGLVGLIMLQQGKGADMGASFGAGASATLFG SSGSGNFMTRMTAVLATLFFIISLVLGNINSNKTNKGSEWENLSAPAKTEQTQPAAPA QPTSDIPR" misc_feature complement(3461919..3462191) /gene="secG" /locus_tag="STM3293" /note="Protein translocase subunit SecG [Intracellular trafficking, secretion, and vesicular transport]; Region: SecG; COG1314" /db_xref="CDD:440925" regulatory complement(3462202..3462207) /regulatory_class="ribosome_binding_site" /gene="secG" /locus_tag="STM3293" /note="putative RBS for secG; RegulonDB:STMS1H003313" gene complement(3462414..3463767) /gene="mrsA" /locus_tag="STM3294" /db_xref="GeneID:1254817" CDS complement(3462414..3463751) /gene="mrsA" /locus_tag="STM3294" /note="similar to E. coli similar to phosphoglucomutases and phosphomannomutases (AAC76208.1); Blastp hit to AAC76208.1 (445 aa), 95% identity in aa 1 - 445" /codon_start=1 /transl_table=11 /product="phosphoglucosamine mutase" /protein_id="NP_462205.1" /db_xref="GeneID:1254817" /translation="MSNRKYFGTDGIRGRVGNAPITPDFVLKLGWAAGKVLARHGSRK IIIGKDTRISGYMLESALEAGLAAAGLSASFTGPMPTPAVAYLTRTFRAEAGIVISAS HNPFYDNGIKFFSIDGTKLPDDVEEAIEAEMEKEITCVDSAELGKASRIVDAAGRYIE FCKGTFPNELSLNGLKVVVDCANGATYHIAPNVLRELGATVIAIGCEPNGVNINEEVG ATDVRALQARVLAEKADLGIALDGDGDRVIMVDHEGNKVDGDQIMYIIAREGLRQGQL RGGAVGTLMSNMGLELALKQLGIPFARAKVGDRYVLEKLQEKGWRIGAENSGHVILLD KTTTGDGIVAGLQVLAAMVRNHMSLHDLCSGMKMFPQILVNVRYTAGSGDPLENEAVK AVTADVEATLGNRGRVLLRKSGTEPLIRVMVEGEDEAQVTAFAHRIADAVKAV" misc_feature complement(3462417..3463742) /gene="mrsA" /locus_tag="STM3294" /note="phosphoglucosamine mutase; Provisional; Region: glmM; PRK10887" /db_xref="CDD:236787" misc_feature complement(order(3462492..3462494,3462507..3462515, 3462519..3462521,3462765..3462767,3462771..3462773, 3462777..3462779,3462828..3462836,3462897..3462899, 3463014..3463019,3463023..3463025,3463029..3463031, 3463416..3463418,3463440..3463448,3463713..3463715, 3463722..3463724,3463728..3463730)) /gene="mrsA" /locus_tag="STM3294" /note="active site" /db_xref="CDD:100095" misc_feature complement(order(3462492..3462494,3462507..3462515, 3462519..3462521,3462765..3462767,3462771..3462773, 3462777..3462779,3462828..3462830,3462834..3462836, 3462897..3462899,3463014..3463016,3463446..3463448, 3463722..3463724)) /gene="mrsA" /locus_tag="STM3294" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100095" misc_feature complement(order(3463017..3463019,3463023..3463025, 3463029..3463031,3463446..3463448)) /gene="mrsA" /locus_tag="STM3294" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:100095" gene complement(3463744..3464606) /gene="folP" /locus_tag="STM3295" /db_xref="GeneID:1254818" CDS complement(3463744..3464592) /gene="folP" /locus_tag="STM3295" /EC_number="2.5.1.15" /note="similar to E. coli 7,8-dihydropteroate synthase (AAC76209.1); Blastp hit to AAC76209.1 (297 aa), 91% identity in aa 16 - 297" /codon_start=1 /transl_table=11 /product="7,8-dihydropteroate synthase" /protein_id="NP_462206.1" /db_xref="GeneID:1254818" /translation="MKLFAQGATLDLTHPHVMGILNVTPDSFSDGGAHNTLIEAVKHA NLMVNAGATIIDVGGESTRPGAAEVSVEEELDRVIPVLEAIAQRFEVWISVDTSKPEV IREAARAGAHIINDVRSLSEPGALEAAAETGLPVSLMHMQGNPKTMQEAPKYDDVFAE VNRYFIEQIARCEKAGIAKEKLLLDPGFGFGKNLSHNYTLLARLGEFHHFNLPLLVGM SRKTMVGQLLNVGPSDRLNGSLACAVIAAMQGAQIIRVHDVKETVEAMRVVEATLSAK GNKRYE" misc_feature complement(3463747..3464592) /gene="folP" /locus_tag="STM3295" /note="dihydropteroate synthase; Provisional; Region: folP; PRK11613" /db_xref="CDD:183230" misc_feature complement(order(3463822..3463824,3463828..3463830, 3463930..3463932,3463942..3463944,3464038..3464040, 3464176..3464178,3464242..3464244,3464248..3464250, 3464305..3464307,3464527..3464529)) /gene="folP" /locus_tag="STM3295" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:238380" misc_feature complement(order(3463798..3463803,3463846..3463848, 3463858..3463860,3463870..3463872,3463984..3463989, 3463999..3464001)) /gene="folP" /locus_tag="STM3295" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238380" misc_feature complement(3463930..3463938) /gene="folP" /locus_tag="STM3295" /note="inhibitor binding site [active]" /db_xref="CDD:238380" regulatory complement(3463762..3463767) /regulatory_class="ribosome_binding_site" /gene="folP" /locus_tag="STM3295" /note="putative RBS for mrsA; RegulonDB:STMS1H003314" regulatory complement(3464601..3464606) /regulatory_class="ribosome_binding_site" /gene="folP" /locus_tag="STM3295" /note="putative RBS for folP; RegulonDB:STMS1H003315" gene complement(3464697..3466631) /gene="hflB" /locus_tag="STM3296" /db_xref="GeneID:1254819" CDS complement(3464697..3466631) /gene="hflB" /locus_tag="STM3296" /EC_number="3.4.24.-" /note="similar to E. coli degrades sigma32, integral membrane peptidase, cell division protein (AAC76210.1); Blastp hit to AAC76210.1 (644 aa), 97% identity in aa 1 - 644" /codon_start=1 /transl_table=11 /product="ATP-dependent zinc-metallo protease" /protein_id="NP_462207.1" /db_xref="GeneID:1254819" /translation="MAKNLILWLVIAVVLMSVFQSFGPSESNGRKVDYSTFLQEVNQD QVREARINGREINVTKKDSNRYTTYIPINDPKLLDNLLTKNVKVVGEPPEEPSLLASI FISWFPMLLLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTEDQIKTTFADVAGCDEA KEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG SDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLN QMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVH MRRVPLATDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI MMGAERRSMVMTEAQKESTAYHEAGHAIIGRLVPEHDPVHKVTIIPRGRALGVTFFLP EGDAISASRQKLESQISTLYGGRLAEEIIYGVEHVSTGASNDIKVATNLARNMVTQWG FSEKLGPLLYAEEEGEVFLGRSVAKAKHMSDETARIIDQEVKALIERNYNRARQILTD NMDILHAMKDALMKYETIDAPQIDDLMARREVRPPAGWEDPNGTNNSDSNGTPQAPRP VDEPRTPNPGNTMSEQLGDK" misc_feature complement(3464700..3466631) /gene="hflB" /locus_tag="STM3296" /note="ATP-dependent zinc metalloprotease FtsH; Region: hflB; PRK10733" /db_xref="CDD:182683" gene complement(3466735..3467374) /gene="ftsJ" /locus_tag="STM3297" /db_xref="GeneID:1254820" CDS complement(3466735..3467361) /gene="ftsJ" /locus_tag="STM3297" /note="similar to E. coli cell division protein (AAC76211.1); Blastp hit to AAC76211.1 (209 aa), 100% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="23S rRNA methyltransferase" /protein_id="NP_462208.1" /db_xref="GeneID:1254820" /translation="MTGKKRSASSSRWLQEHFSDKYVQQAQKKGLRSRAWFKLDEIQQ SDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDPIVGVDFLQGDFRD ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS FVVKVFQGEGFDEYLREIRSLFTKVKVRKPDSSRARSREVYIVATGRK" misc_feature complement(3466738..3467361) /gene="ftsJ" /locus_tag="STM3297" /note="23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE; Region: rrmJ; PRK11188" /db_xref="CDD:183025" misc_feature complement(order(3466990..3466992,3467062..3467070, 3467110..3467115,3467170..3467190)) /gene="ftsJ" /locus_tag="STM3297" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" regulatory complement(3467369..3467374) /regulatory_class="ribosome_binding_site" /gene="ftsJ" /locus_tag="STM3297" /note="putative RBS for ftsJ; RegulonDB:STMS1H003316" gene 3467431..3467781 /gene="yhbY" /locus_tag="STM3298" /db_xref="GeneID:1254821" regulatory 3467431..3467436 /regulatory_class="ribosome_binding_site" /gene="yhbY" /locus_tag="STM3298" /note="putative RBS for yhbY; RegulonDB:STMS1H003317" CDS 3467449..3467781 /gene="yhbY" /locus_tag="STM3298" /note="contains KH domain; similar to E. coli orf, hypothetical protein (AAC76212.1); Blastp hit to AAC76212.1 (97 aa), 95% identity in aa 1 - 97" /codon_start=1 /transl_table=11 /product="putative RNA-binding protein" /protein_id="NP_462209.3" /db_xref="GeneID:1254821" /translation="MTRFQSQRKQKYTMNLSTKQKQHLKGLAHPLKPVVMLGNNGLTE GVLAEIEQALEHHELIKVKIASEDRETKTLIVDAIVRETGACNVQVIGKTLVLYRPTK ERKISLPR" misc_feature 3467488..3467778 /gene="yhbY" /locus_tag="STM3298" /note="ribosome assembly RNA-binding protein YhbY; Region: PRK10343" /db_xref="CDD:182393" gene complement(3467937..3468425) /gene="greA" /locus_tag="STM3299" /db_xref="GeneID:1254822" CDS complement(3467937..3468413) /gene="greA" /locus_tag="STM3299" /note="cleaves 3' nucleotide of paused mRNA; similar to E. coli transcription elongation factor: cleaves 3' nucleotide of paused mRNA (AAC76213.1); Blastp hit to AAC76213.1 (153 aa), 96% identity in aa 1 - 153" /codon_start=1 /transl_table=11 /product="transcription elongation factor" /protein_id="NP_462210.1" /db_xref="GeneID:1254822" /translation="MQAIPMTLRGAEKLREELDFLKSVRRPEIIAAIAEAREHGDLKE NAEYHAAREQQGFCEGRIKDIEAKLSNAQVIDVTKMPNNGRVIFGATVTVLNLDTDEE QTYRIVGDDEADFKQNLISVNSPIARGLIGKEQDDVVVIKTPGGDVEYEVLKVEYL" misc_feature complement(3467943..3468413) /gene="greA" /locus_tag="STM3299" /note="transcription elongation factor GreA; Reviewed; Region: greA; PRK00226" /db_xref="CDD:234693" regulatory complement(3468420..3468425) /regulatory_class="ribosome_binding_site" /gene="greA" /locus_tag="STM3299" /note="putative RBS for greA; RegulonDB:STMS1H003318" gene 3468641..3470094 /gene="dacB" /locus_tag="STM3300" /db_xref="GeneID:1254823" regulatory 3468641..3468646 /regulatory_class="ribosome_binding_site" /gene="dacB" /locus_tag="STM3300" /note="putative RBS for dacB; RegulonDB:STMS1H003319" CDS 3468661..3470094 /gene="dacB" /locus_tag="STM3300" /EC_number="3.4.16.4" /note="similar to E. coli D-alanyl-D-alanine carboxypeptidase, fraction B; penicillin-binding protein 4 (AAC76214.1); Blastp hit to AAC76214.1 (477 aa), 93% identity in aa 1 - 477" /codon_start=1 /transl_table=11 /product="D-alanyl-D-alanine carboxypeptidase" /protein_id="NP_462211.1" /db_xref="GeneID:1254823" /translation="MRFSRFIIGLTTSIAFSVQAANIDEYIKQLPAGANLALMVQKIG APAPAIDYHSQQMALPASTQKVITALAALIQLGPDFRFTTTLETKGNVDNGILKGDVI ARFGGDPTLKRQDIRNMVATLKKSGVTQIDGNVLIDTSIFASHDKAPGWPWNDLTQCF SAPPAAAIVDRNCFSVSLYSAQKPNDLAFIRVASYYPVTMFSQVRTLPRGSADAQYCE LDVVPGDLNRYTLTGCLPQRADPLPLAFAIQDGASYAGAILKQELKEAGITYRGTLLR QTQVNEPGTIVASKQSAPLHDLLKIMLKKSDNMIADTVFRMIGHVRFNVPGTWRAGSD AVRQILRQQAGIDIGNTIIADGSGLSRHNLIAPATMMQVLQYIAQHDNELNFISMLPL AGYDGSLQYRAGLHQAGVDGKVSAKTGSLQGVYNLAGFITTASGQRMAFVQYLSGYAV PPADQRNRRIPLVRFESRLYKDIYQNN" misc_feature 3468661..3470091 /gene="dacB" /locus_tag="STM3300" /note="D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional; Region: PRK11113" /db_xref="CDD:182972" gene complement(3470226..3471410) /gene="yhbZ" /locus_tag="STM3301" /db_xref="GeneID:1254824" CDS complement(3470226..3471398) /gene="yhbZ" /locus_tag="STM3301" /note="similar to E. coli putative GTP-binding factor (AAC76215.1); Blastp hit to AAC76215.1 (390 aa), 95% identity in aa 1 - 390" /codon_start=1 /transl_table=11 /product="putative GTP-binding protein" /protein_id="NP_462212.1" /db_xref="GeneID:1254824" /translation="MKFVDEASILVVAGDGGNGCVSFRREKYIPKGGPDGGDGGDGGD VWMEADENLNTLIDYRFEKSFRAERGQNGASRDCTGKRGKDVTIKVPVGTRVIDQGTG ETMGDMTKHGQRLLVAKGGWHGLGNTRFKSSVNRTPRQKTNGTPGDKRDLLLELMLLA DVGMLGMPNAGKSTFIRAVSAAKPKVADYPFTTLVPSLGVVRMDSEKSFVVADIPGLI EGAAEGAGLGIRFLKHLERCRVLLHLIDIDPIDGSDPVENARIIIGELEKYSQDLAAK PRWLVFNKIDLMDKTEAEEKAKAIAEALGWEGKYYLISAASQLGVKDLCWDVMTFIIE NPIAQAEEAKQPEKVEFMWDDYHRQQLAEVEEDADDDWDDDWDEDDEEGVEFIYKR" misc_feature complement(3470316..3471398) /gene="yhbZ" /locus_tag="STM3301" /note="GTPase CgtA; Reviewed; Region: obgE; PRK12298" /db_xref="CDD:237047" regulatory complement(3471405..3471410) /regulatory_class="ribosome_binding_site" /gene="yhbZ" /locus_tag="STM3301" /note="putative RBS for yhbZ; RegulonDB:STMS1H003320" gene complement(3471414..3472378) /gene="yhbE" /locus_tag="STM3302" /note="pseudogene; frameshift relative to E. coli b3184 (yhhE)" /pseudo /db_xref="GeneID:1254825" gene complement(3472508..3472781) /gene="rpmA" /locus_tag="STM3303" /db_xref="GeneID:1254826" CDS complement(3472508..3472765) /gene="rpmA" /locus_tag="STM3303" /note="similar to E. coli 50S ribosomal subunit protein L27 (AAC76217.1); Blastp hit to AAC76217.1 (85 aa), 95% identity in aa 1 - 85" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L27" /protein_id="NP_462213.1" /db_xref="GeneID:1254826" /translation="MAHKKAGGSTRNGRDSEAKRLGVKRFGGEAVLAGSIIVRQRGTK FHAGTNVGCGRDHTLFAKADGKVKFEVKGPKNRKYISIVAE" misc_feature complement(3472517..3472765) /gene="rpmA" /locus_tag="STM3303" /note="50S ribosomal protein L27; Validated; Region: rpmA; PRK05435" /db_xref="CDD:235464" regulatory complement(3472776..3472781) /regulatory_class="ribosome_binding_site" /gene="rpmA" /locus_tag="STM3303" /note="putative RBS for rpmA; RegulonDB:STMS1H003322" gene complement(3472785..3473108) /gene="rplU" /locus_tag="STM3304" /db_xref="GeneID:1254827" CDS complement(3472785..3473096) /gene="rplU" /locus_tag="STM3304" /note="similar to E. coli 50S ribosomal subunit protein L21 (AAC76218.1); Blastp hit to AAC76218.1 (103 aa), 99% identity in aa 1 - 103" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L21" /protein_id="NP_462214.1" /db_xref="GeneID:1254827" /translation="MYAVFQSGGKQHRVSEGQTVRLEKLDIATGETIEFAEVLMIANG EEVKIGVPFVDGGVIKAEVVAHGRGEKVKIVKFRRRKHYRKQQGHRQWFTDVKITGIS A" misc_feature complement(3472788..3473096) /gene="rplU" /locus_tag="STM3304" /note="50S ribosomal protein L21; Validated; Region: rplU; PRK05573" /db_xref="CDD:235510" regulatory complement(3473103..3473108) /regulatory_class="ribosome_binding_site" /gene="rplU" /locus_tag="STM3304" /note="putative RBS for rplU; RegulonDB:STMS1H003323" gene 3473342..3474325 /gene="ispB" /locus_tag="STM3305" /db_xref="GeneID:1254828" regulatory 3473342..3473347 /regulatory_class="ribosome_binding_site" /gene="ispB" /locus_tag="STM3305" /note="putative RBS for ispB; RegulonDB:STMS1H003324" CDS 3473354..3474325 /gene="ispB" /locus_tag="STM3305" /EC_number="2.5.1.-" /note="similar to E. coli octaprenyl diphosphate synthase (AAC76219.1); Blastp hit to AAC76219.1 (323 aa), 95% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="octaprenyl diphosphate synthase" /protein_id="NP_462215.1" /db_xref="GeneID:1254828" /translation="MNLEKINELTAQDMAGVNATILEQLNSDVQLINQLGYYIISGGG KRIRPMIAVLAARAVGYQGNAHVTIAALIEFIHTATLLHDDVVDESDMRRGKATANAA FGNAASVLVGDFIYTRAFQMMTSLGSLKVLEVMSEAVNVIAEGEVLQLMNVNDPDITE ENYMRVIYSKTARLFEAAAQCSGILAGCTPEQEKGLQDYGRYLGTAFQLIDDLLDYSA DGEHLGKNVGDDLNEGKPTLPLLHAMRHGTPEQSAMIRTAIEQGNGRHLLEPVLEAMT TCGSLEWTRQRAEEEADKAISALQILPDTPWREALIGLAHIAVQRDR" misc_feature 3473354..3474322 /gene="ispB" /locus_tag="STM3305" /note="octaprenyl diphosphate synthase; Provisional; Region: PRK10888" /db_xref="CDD:182813" misc_feature order(3473579..3473581,3473588..3473596,3473600..3473608, 3473612..3473617,3473630..3473635,3473789..3473791, 3473798..3473800,3473861..3473866,3473873..3473875, 3473984..3473989,3473996..3473998,3474026..3474028, 3474041..3474043,3474056..3474058) /gene="ispB" /locus_tag="STM3305" /note="substrate binding pocket [chemical binding]; other site" /db_xref="CDD:173833" misc_feature 3473588..3473617 /gene="ispB" /locus_tag="STM3305" /note="chain length determination region [active]" /db_xref="CDD:173833" misc_feature order(3473603..3473608,3473615..3473617,3473630..3473635, 3473798..3473800,3473861..3473863,3473984..3473989, 3473996..3473998,3474026..3474028,3474041..3474043, 3474056..3474058) /gene="ispB" /locus_tag="STM3305" /note="substrate-Mg2+ binding site [active]" /db_xref="CDD:173833" misc_feature order(3473603..3473608,3473615..3473617,3473630..3473635, 3473861..3473863,3473984..3473989) /gene="ispB" /locus_tag="STM3305" /note="catalytic residues [active]" /db_xref="CDD:173833" misc_feature order(3473603..3473608,3473615..3473617,3473630..3473635, 3473798..3473800,3473861..3473863) /gene="ispB" /locus_tag="STM3305" /note="aspartate-rich region 1; other site" /db_xref="CDD:173833" misc_feature order(3473621..3473665,3474005..3474010,3474026..3474043, 3474050..3474064) /gene="ispB" /locus_tag="STM3305" /note="active site lid residues [active]" /db_xref="CDD:173833" misc_feature order(3473984..3473989,3473996..3473998,3474026..3474028, 3474041..3474043,3474056..3474058) /gene="ispB" /locus_tag="STM3305" /note="aspartate-rich region 2; other site" /db_xref="CDD:173833" gene 3474541..3474844 /gene="nlp" /locus_tag="STM3306" /db_xref="GeneID:1254829" regulatory 3474541..3474546 /regulatory_class="ribosome_binding_site" /gene="nlp" /locus_tag="STM3306" /note="putative RBS for nlp; RegulonDB:STMS1H003325" CDS 3474557..3474844 /gene="nlp" /locus_tag="STM3306" /note="similar to Ner repressor protein of phage Mu; similar to E. coli regulatory factor of maltose metabolism; similar to Ner repressor protein of phage Mu (AAC76220.1); Blastp hit to AAC76220.1 (92 aa), 86% identity in aa 1 - 92" /codon_start=1 /transl_table=11 /product="regulatory factor of maltose metabolism" /protein_id="NP_462216.1" /db_xref="GeneID:1254829" /translation="MESKLIDWHPADIIAGLRKKGTSMAAESRRNGLSSSTLANALTR PWPKGELIIAKALGTEPWVIWPSRYHDPRTHEFIDRTRLMRARNKNKQNVE" misc_feature 3474557..3474832 /gene="nlp" /locus_tag="STM3306" /note="DNA-binding transcriptional regulator SfsB; Region: PRK10344" /db_xref="CDD:182394" gene complement(3474902..3476173) /gene="murA" /locus_tag="STM3307" /db_xref="GeneID:1254830" CDS complement(3474902..3476161) /gene="murA" /locus_tag="STM3307" /EC_number="2.5.1.7" /note="similar to E. coli first step in murein biosynthesis;UDP-N-glucosamine 1-carboxyvinyltransferase (AAC76221.1); Blastp hit to AAC76221.1 (419 aa), 97% identity in aa 1 - 419" /codon_start=1 /transl_table=11 /product="UDP-N-acetylglucosamine 1-carboxyvinyltransferase" /protein_id="NP_462217.1" /db_xref="GeneID:1254830" /translation="MDKFRVQGPTTLQGEVTISGAKNAALPILFAALLAEEPVEIQNV PKLKDVDTSMKLLSQLGAKVERNGSVHIDASQVNVFCAPYDLVKTMRASIWALGPLVA RFGQGQVSLPGGCTIGARPVDLHITGLEQLGATIKLEEGYVKASVEGRLKGAHIVMDK VSVGATVTIMCAATLAEGTTIIENAAREPEIVDTANFLVTLGAKIAGQGTDRITIEGV ERLGGGVYRVLPDRIETGTFLVAAAISRGKILCRNAQPDTLDAVLAKLRDAGADIEVG EDWISLDMHGKRPKAVNVRTAPHPAFPTDMQAQFTLLNLVAEGTGFITETVFENRFMH VPELSRMGARAEIESNTVICHGVETLSGAQVMATDLRASASLVLAGCIAEGTTIVDRI YHIDRGYERIEDKLRALGANIERVKGE" misc_feature complement(3474914..3476161) /gene="murA" /locus_tag="STM3307" /note="UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated; Region: PRK09369" /db_xref="CDD:236486" misc_feature complement(order(3475469..3475480,3476099..3476110)) /gene="murA" /locus_tag="STM3307" /note="hinge; other site" /db_xref="CDD:238796" misc_feature complement(order(3475247..3475249,3475670..3475675, 3475682..3475684,3475787..3475804,3475877..3475879, 3475889..3475891,3476093..3476095)) /gene="murA" /locus_tag="STM3307" /note="active site" /db_xref="CDD:238796" regulatory complement(3476168..3476173) /regulatory_class="ribosome_binding_site" /gene="murA" /locus_tag="STM3307" /note="putative RBS for murA; RegulonDB:STMS1H003326" gene complement(3476215..3476508) /gene="yrbA" /locus_tag="STM3308" /db_xref="GeneID:1254831" CDS complement(3476215..3476508) /gene="yrbA" /locus_tag="STM3308" /note="similar to E. coli orf, hypothetical protein (AAC76222.1); Blastp hit to AAC76222.1 (89 aa), 95% identity in aa 3 - 89" /codon_start=1 /transl_table=11 /product="putative BolA family transcriptional regulator" /protein_id="NP_462218.1" /db_xref="GeneID:1254831" /translation="MLGCFHYLTNKEPMENHEIQSVLMNALSLQEVHVSGDGSHFQVI AVGEMFDGMSRVKKQQTVYGPLMEYIADNRIHAVSIKAYTPAEWARDRKLNGF" misc_feature complement(3476227..3476469) /gene="yrbA" /locus_tag="STM3308" /note="Acid stress protein IbaG/YrbA, BolA-like family [Signal transduction mechanisms]; Region: IbaG; COG5007" /db_xref="CDD:444031" gene complement(3476657..3476967) /gene="yrbB" /locus_tag="STM3309" /db_xref="GeneID:1254832" CDS complement(3476657..3476953) /gene="yrbB" /locus_tag="STM3309" /note="similar to E. coli orf, hypothetical protein (AAC76223.1); Blastp hit to AAC76223.1 (129 aa), 69% identity in aa 33 - 129" /codon_start=1 /transl_table=11 /product="putative STAS domain protein" /protein_id="NP_462219.1" /db_xref="GeneID:1254832" /translation="MTPQLTWTREADTLVLAGELDQDVLAPLWDARVEAMNGVTRIDL SQISRVDTGGLALLAHLVNQAKKQGNAVSLSGVNDKVYALAQLYNLPEDVLPRM" misc_feature complement(3476666..3476947) /gene="yrbB" /locus_tag="STM3309" /note="lipid asymmetry maintenance protein MlaB; Region: mlaB_1; NF033618" /db_xref="CDD:411237" gene complement(3476953..3477603) /gene="yrbC" /locus_tag="STM3310" /db_xref="GeneID:1254833" CDS complement(3476953..3477588) /gene="yrbC" /locus_tag="STM3310" /note="atp&memb; similar to E. coli orf, hypothetical protein (AAC76224.1); Blastp hit to AAC76224.1 (211 aa), 93% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="putative ABC superfamily transport protein" /protein_id="NP_462220.1" /db_xref="GeneID:1254833" /translation="MFKRLMMVALLVIAPLSAATAADQSNPYKLMNEAAQKTFDRLKN EQPKIRANPDYLRDVVDQELLPYVQVKYAGALVLGRYYKEATPAQREAYFAAFREYLK QAYGQALAMYHGQTYQIAPEQPLGDATIVPIRVTIIDPNGRPPVRLDFQWRKNTQTGN WQAYDMIAEGVSMITTKQNEWSDLLRTKGIDGLTAQLKSISQQKITLDEKQ" misc_feature complement(3476956..3477588) /gene="yrbC" /locus_tag="STM3310" /note="phospholipid-binding protein MlaC; Region: PRK15117" /db_xref="CDD:237912" regulatory complement(3476962..3476967) /regulatory_class="ribosome_binding_site" /gene="yrbB" /locus_tag="STM3309" /note="putative RBS for yrbB; RegulonDB:STMS1H003327" regulatory complement(3477598..3477603) /regulatory_class="ribosome_binding_site" /gene="yrbC" /locus_tag="STM3310" /note="putative RBS for yrbC; RegulonDB:STMS1H003328" gene complement(3477607..3478173) /gene="yrbD" /locus_tag="STM3311" /db_xref="GeneID:1254834" CDS complement(3477607..3478158) /gene="yrbD" /locus_tag="STM3311" /note="bind_prot; similar to E. coli orf, hypothetical protein (AAC76225.1); Blastp hit to AAC76225.1 (183 aa), 87% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="putative ABC superfamily transport protein" /protein_id="NP_462221.1" /db_xref="GeneID:1254834" /translation="MQTKKNEIWVGVFLLVALLAALFVCLKAANVTSMRTEPTYKVYA TFDNIGGLKVRSPVRIGGVVVGRVEDISLDPKTYLPRVTLDIEERYNHIPDTSSLSIR TSGLLGEQYLALNVGFEDPELGTSILKDGSTIQDTKSAMVLEDMIGQFLYNSKGDDNK NSGDAPAATEGHTEATTPAGETK" misc_feature complement(3477700..3478155) /gene="yrbD" /locus_tag="STM3311" /note="outer membrane lipid asymmetry maintenance protein MlaD; Region: OM_asym_MlaD; TIGR04430" /db_xref="CDD:275223" gene complement(3478163..3478963) /gene="yrbE" /locus_tag="STM3312" /db_xref="GeneID:1254835" CDS complement(3478163..3478945) /gene="yrbE" /locus_tag="STM3312" /note="membr; similar to E. coli orf, hypothetical protein (AAC76226.1); Blastp hit to AAC76226.1 (260 aa), 96% identity in aa 1 - 260" /codon_start=1 /transl_table=11 /product="putative ABC superfamily transport protein" /protein_id="NP_462222.1" /db_xref="GeneID:1254835" /translation="MLLNALAALGHSGIKTVRTFGRAGLMLFNAIIGKPEFRKHAPLL VRQLYNVGVLSMLIIIVSGVFIGMVLGLQGYLVLTTYSAETSLGMLVALSLLRELGPV VAALLFAGRAGSALTAEIGLMRATEQLSSMEMMAVDPLRRVISPRFWAGVISLPLLTI IFVAVGIWGGSLVGVSWKGIDAGFFWSAMQNAVDWRMDLVNCLIKSVVFAITVTWIAL FNGYDAIPTSAGISRATTRTVVHASLAVLGLDFVLTALMFGN" misc_feature complement(3478169..3478927) /gene="yrbE" /locus_tag="STM3312" /note="lipid asymmetry maintenance ABC transporter permease subunit MlaE; Region: perm_MlaE_1; NF033619" /db_xref="CDD:411238" regulatory complement(3478168..3478173) /regulatory_class="ribosome_binding_site" /gene="yrbD" /locus_tag="STM3311" /note="putative RBS for yrbD; RegulonDB:STMS1H003329" gene complement(3478953..3479777) /gene="yrbF" /locus_tag="STM3313" /db_xref="GeneID:1254836" CDS complement(3478953..3479765) /gene="yrbF" /locus_tag="STM3313" /note="atp_bind; similar to E. coli putative ATP-binding component of a transport system (AAC76227.1); Blastp hit to AAC76227.1 (269 aa), 94% identity in aa 1 - 266" /codon_start=1 /transl_table=11 /product="putative ABC superfamily transport protein" /protein_id="NP_462223.1" /db_xref="GeneID:1254836" /translation="MGQSAANLVDMRDVSFSRGERCIFDNISLTVPRGKITAIMGPSG IGKTTLLRLIGGQIPPDKGEILFDGENVPAMSRSRLYTVRKRMSMLFQSGALFTDMNV FDNVAYPLREHTNLPAPLLKSVVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIA LEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAWIM ADKKIVAHGSAQALQENTDPRVRQFLDGIADGPVPFRYPAGDYHLDLLETGS" misc_feature complement(3478956..3479762) /gene="yrbF" /locus_tag="STM3313" /note="phospholipid ABC transporter ATP-binding protein MlaF; Region: PRK11831" /db_xref="CDD:236997" regulatory complement(3478958..3478963) /regulatory_class="ribosome_binding_site" /gene="yrbE" /locus_tag="STM3312" /note="putative RBS for yrbE; RegulonDB:STMS1H003330" regulatory complement(3479772..3479777) /regulatory_class="ribosome_binding_site" /gene="yrbF" /locus_tag="STM3313" /note="putative RBS for yrbF; RegulonDB:STMS1H003331" gene 3479967..3480955 /gene="yrbG" /locus_tag="STM3314" /db_xref="GeneID:1254837" regulatory 3479967..3479972 /regulatory_class="ribosome_binding_site" /gene="yrbG" /locus_tag="STM3314" /note="putative RBS for yrbG; RegulonDB:STMS1H003332" CDS 3479978..3480955 /gene="yrbG" /locus_tag="STM3314" /note="similar to E. coli orf, hypothetical protein (AAC76228.1); Blastp hit to AAC76228.1 (325 aa), 87% identity in aa 1 - 324" /codon_start=1 /transl_table=11 /product="putative CacA family Na:Ca transport protein" /protein_id="NP_462224.1" /db_xref="GeneID:1254837" /translation="MLLAMALLIIGLLLVAYGADRLVFAASILCRTFGIPPLIIGMTV VSIGTSLPEIIVSAAASLHGQLDLAVGAALGSNITNILLILGLAALVRPFTVHSDVLR RELPLMLFVSVVAGSVLHDGQLSRSDGIFLLLLAVLWLLFIVKIARLAERQGNDSLTR EQLAELPREGGLPVAFLWLGIALVIMPMATRMVIDNATVLANYFAMSELTLGLTVIAV GTSLPELATAIAGVRKGENDIAVGNLIGANIFNLAIVLGLPALIAPGEINPLAFGRDY SVMLLVSVVFALLCWRHPRQIGRGAGILLTGGFIVWLAMLYWLSPLLVG" misc_feature 3479978..3480952 /gene="yrbG" /locus_tag="STM3314" /note="putative calcium/sodium:proton antiporter; Provisional; Region: PRK10734" /db_xref="CDD:182684" gene 3480956..3481955 /gene="yrbH" /locus_tag="STM3315" /db_xref="GeneID:1254838" regulatory 3480956..3480961 /regulatory_class="ribosome_binding_site" /gene="yrbH" /locus_tag="STM3315" /note="putative RBS for yrbH; RegulonDB:STMS1H003333" CDS 3480969..3481955 /gene="yrbH" /locus_tag="STM3315" /note="similar to E. coli putative isomerase (AAC76229.1); Blastp hit to AAC76229.1 (328 aa), 92% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="putative polysialic acid capsule expression protein" /protein_id="NP_462225.1" /db_xref="GeneID:1254838" /translation="MSHLALQPGFDFQQAGKEVLEIEREGLAELDQYINQHFTLACEK MFNCTGKVVVMGMGKSGHIGRKMAATFASTGTSSFFVHPGEAAHGDLGMVTPQDVVIA ISNSGESSEIAALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVPKEACPLGLAP TSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPH VNKHATLRDALLEITRKNLGMTVICDESMKIDGIFTDGDLRRVFDMGGDMRQLGIAEV MTPGGIRVRPGILAVDALNLMQSRHITSVLVADGDQLLGVLHMHDLLRAGVV" misc_feature 3480975..3481952 /gene="yrbH" /locus_tag="STM3315" /note="arabinose-5-phosphate isomerase KdsD; Region: PRK10892" /db_xref="CDD:182814" gene 3481962..3482542 /gene="yrbI" /locus_tag="STM3316" /db_xref="GeneID:1254839" regulatory 3481962..3481967 /regulatory_class="ribosome_binding_site" /gene="yrbI" /locus_tag="STM3316" /note="putative RBS for yrbI; RegulonDB:STMS1H003334" CDS 3481976..3482542 /gene="yrbI" /locus_tag="STM3316" /note="CMP-Neu5Ac homolog; similar to E. coli orf, hypothetical protein (AAC76230.1); Blastp hit to AAC76230.1 (188 aa), 96% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="putative protein of HAD superfamily" /protein_id="NP_462226.1" /db_xref="GeneID:1254839" /translation="MSKAGASLATCYGPVSPHVMTKAENIRLLILDVDGVLSDGLIYM GNNGEELKAFNVRDGYGIRCALTSNIEVAIITGRKAKLVEDRCATLGIVHLYQGQSNK LIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVAVADAHPLLIPRADYVTHIA GGRGAVREVCDLLLLAQGKLDEAKGQSI" misc_feature 3481991..3482539 /gene="yrbI" /locus_tag="STM3316" /note="3-deoxy-manno-octulosonate-8-phosphatase KdsC; Region: PRK09484" /db_xref="CDD:181898" misc_feature order(3482069..3482083,3482201..3482206,3482279..3482281, 3482345..3482350,3482357..3482362) /gene="yrbI" /locus_tag="STM3316" /note="active site" /db_xref="CDD:319769" misc_feature order(3482075..3482077,3482090..3482113,3482117..3482119, 3482123..3482146,3482153..3482155,3482165..3482167, 3482207..3482209,3482216..3482221,3482228..3482233, 3482240..3482242,3482273..3482275,3482348..3482359, 3482363..3482368,3482405..3482407,3482417..3482419, 3482462..3482464,3482474..3482476,3482486..3482488) /gene="yrbI" /locus_tag="STM3316" /note="tetramer interface [polypeptide binding]; other site" /db_xref="CDD:319769" gene 3482519..3483114 /gene="yrbK" /locus_tag="STM3317" /db_xref="GeneID:1254840" regulatory 3482519..3482524 /regulatory_class="ribosome_binding_site" /gene="yrbI" /locus_tag="STM3316" /note="putative RBS for yrbK; RegulonDB:STMS1H003335" CDS 3482539..3483114 /gene="yrbK" /locus_tag="STM3317" /note="similar to E. coli orf, hypothetical protein (AAC76231.1); Blastp hit to AAC76231.1 (191 aa), 91% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462227.1" /db_xref="GeneID:1254840" /translation="MSKTRRWVIILLSLAILVLIGINLADKDDPAAVMVNSNDPTYKS EHTDTVVYSPEGALSYRLIAQHVEYFSDQAVSWFTQPVLTTFDKDKVPTWSIKADKAK LTNDRMLYLYGHVEVNALVPDAQLRRITTDNAQINLVTQDVTSNDLVTLYGTTFNSSG LKMRGNLRSKNAELIEKVRTSYEIQNKQTQP" misc_feature 3482539..3483111 /gene="yrbK" /locus_tag="STM3317" /note="LPS export ABC transporter periplasmic protein LptC; Region: PRK10893" /db_xref="CDD:236788" gene 3483067..3483637 /gene="yhbN" /locus_tag="STM3318" /db_xref="GeneID:1254841" regulatory 3483067..3483072 /regulatory_class="ribosome_binding_site" /gene="yhbN" /locus_tag="STM3318" /note="putative RBS for yhbN; RegulonDB:STMS1H003336" CDS 3483083..3483637 /gene="yhbN" /locus_tag="STM3318" /note="bind_prot; similar to E. coli orf, hypothetical protein (AAC76232.1); Blastp hit to AAC76232.1 (185 aa), 91% identity in aa 1 - 185" /codon_start=1 /transl_table=11 /product="putative ABC superfamily transport protein" /protein_id="NP_462228.1" /db_xref="GeneID:1254841" /translation="MKFKTNKLSLNLMLAGSLLAASIPAFAVTGDTEQPIHIDSDQQS LDMQGNVVTFTGNVVMTQGTIKINADKVVVTRPGGEQGKEVIDGYGNPATFYQMQDNG KPVKGHASHMHYELAKDFVVLTGNAYLEQLDSNITGDKITYLVKEQKMQAFSEKGKRV TTVLVPSQLQDKNKGQTPAQKKSN" misc_feature 3483095..3483634 /gene="yhbN" /locus_tag="STM3318" /note="lipopolysaccharide ABC transporter substrate-binding protein LptA; Region: PRK10894" /db_xref="CDD:182816" gene 3483644..3484369 /gene="yhbG" /locus_tag="STM3319" /db_xref="GeneID:1254842" CDS 3483644..3484369 /gene="yhbG" /locus_tag="STM3319" /note="atp_bind; similar to E. coli putative ATP-binding component of a transport system (AAC76233.1); Blastp hit to AAC76233.1 (241 aa), 98% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="putative ABC superfamily transport protein" /protein_id="NP_462229.1" /db_xref="GeneID:1254842" /translation="MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTT TFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRRLSVFDNLMAV LQIRDDLTAEQREDRANELMEEFHIEHLRDSMGQALSGGERRRVEIARALAANPKFIL LDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAH GTPTEILQDEHVKRVYLGEDFRL" misc_feature 3483644..3484366 /gene="yhbG" /locus_tag="STM3319" /note="ABC-type lipopolysaccharide export system, ATPase component [Cell wall/membrane/envelope biogenesis]; Region: LptB; COG1137" /db_xref="CDD:440752" gene 3484314..3485850 /gene="rpoN" /locus_tag="STM3320" /db_xref="GeneID:1254843" regulatory 3484314..3484322 /regulatory_class="minus_35_signal" /gene="yhbG" /locus_tag="STM3319" /note="putative -35_signal for rpoN; RegulonDB:STMLTH004585" regulatory 3484341..3484349 /regulatory_class="minus_10_signal" /gene="yhbG" /locus_tag="STM3319" /note="putative -10_signal for rpoN; RegulonDB:STMLTH004585" regulatory 3484399..3484404 /regulatory_class="ribosome_binding_site" /gene="rpoN" /locus_tag="STM3320" /note="putative RBS for rpoN; RegulonDB:STMS1H003337" CDS 3484417..3485850 /gene="rpoN" /locus_tag="STM3320" /note="pleiotrophic functions including nitrogen metabolism, formate degradation, phage shock response; RNA polymerase SIGMA-54 factor. (SW:RP54_SALTY); sigma N factor of RNA polymerase" /codon_start=1 /transl_table=11 /product="sigma 54" /protein_id="NP_462230.1" /db_xref="GeneID:1254843" /translation="MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALENN PLLEQTDLHDEIDTQQPQDNDPLDTADALEQKEMPEELPLDASWDEIYTAGTPSGPSG DYIDDELPVYQGETTQSLQDYLMWQVELTPFSDTDRAIATSIVDAVDDTGYLTVSLDE IRESMGDVEVDLDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKSTPWLEEARL IICDHLDLLANHDFRTLMRVTRLKEEVLKEAVNLIQSLDPRPGQSIQTGEPEYVIPDV LVRKHNGRWTVELNSDSIPRLQINQHYAAMCNSARNDADSQFIRSNLQDAKWLIKSLE SRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYLHS PRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG IMVARRTVAKYRESLSIPPSNQRKQLV" misc_feature 3484417..3485844 /gene="rpoN" /locus_tag="STM3320" /note="RNA polymerase factor sigma-54; Reviewed; Region: PRK05932" /db_xref="CDD:235648" gene 3485861..3486160 /gene="yhbH" /locus_tag="STM3321" /db_xref="GeneID:1254844" regulatory 3485861..3485866 /regulatory_class="ribosome_binding_site" /gene="yhbH" /locus_tag="STM3321" /note="putative RBS for yhbH; RegulonDB:STMS1H003338" CDS 3485873..3486160 /gene="yhbH" /locus_tag="STM3321" /note="probable SIGMA(54) modulation protein (ORF95). (SW:RP5M_SALTY)" /codon_start=1 /transl_table=11 /product="putative sigma N modulation factor" /protein_id="NP_462231.1" /db_xref="GeneID:1254844" /translation="MQLNITGHNVEITEALREFVTTKFAKLEQYFERINQVYVVLKVE KVTHISDATLHVNGGEIHASAEGQDMYAAIDGLIDKLARQLTRHKDKLKQH" misc_feature 3485873..3486157 /gene="yhbH" /locus_tag="STM3321" /note="ribosome hibernation promoting factor; Region: PRK10470" /db_xref="CDD:182484" misc_feature order(3485882..3485884,3485888..3485890,3485894..3485896, 3485948..3485950,3485957..3485959,3485975..3485980, 3485990..3485992,3486002..3486004,3486029..3486031, 3486038..3486049,3486056..3486058,3486062..3486064, 3486071..3486073,3486077..3486079,3486086..3486088, 3486128..3486133,3486143..3486145) /gene="yhbH" /locus_tag="STM3321" /note="30S subunit binding site [active]" /db_xref="CDD:238308" gene 3486259..3486769 /gene="ptsN" /locus_tag="STM3322" /db_xref="GeneID:1254845" regulatory 3486259..3486264 /regulatory_class="ribosome_binding_site" /gene="ptsN" /locus_tag="STM3322" /note="putative RBS for ptsN; RegulonDB:STMS1H003339" CDS 3486278..3486769 /gene="ptsN" /locus_tag="STM3322" /note="also regulates N metabolism; similar to E. coli phosphotransferase system enzyme IIA, regulates N metabolism (AAC76236.1); Blastp hit to AAC76236.1 (163 aa), 95% identity in aa 1 - 163" /codon_start=1 /transl_table=11 /product="sugar specific PTS family enzyme IIA" /protein_id="NP_462232.1" /db_xref="GeneID:1254845" /translation="MINNDTTLQLSSVLNQECTRSGVHCQSKKRALEIISELAAKQLS LPPQVVFEAILTREKMGSTGIGNGIAIPHGKLEEDTLRAVGVFVQLETPIAFDAIDNQ PVDLLFALLVPADQTKTHLHTLSLVAKRLADKTICRRLRAALNDEELYQIITDTEGEQ NEA" misc_feature 3486281..3486742 /gene="ptsN" /locus_tag="STM3322" /note="PTS IIA-like nitrogen regulatory protein PtsN; Region: PRK10896" /db_xref="CDD:182818" misc_feature order(3486446..3486448,3486494..3486496) /gene="ptsN" /locus_tag="STM3322" /note="active site" /db_xref="CDD:238129" misc_feature 3486494..3486496 /gene="ptsN" /locus_tag="STM3322" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238129" gene 3486800..3487669 /gene="yhbJ" /locus_tag="STM3323" /db_xref="GeneID:1254846" regulatory 3486800..3486805 /regulatory_class="ribosome_binding_site" /gene="yhbJ" /locus_tag="STM3323" /note="putative RBS for yhbJ; RegulonDB:STMS1H003340" CDS 3486815..3487669 /gene="yhbJ" /locus_tag="STM3323" /note="similar to E. coli orf, hypothetical protein (AAC76237.1); Blastp hit to AAC76237.1 (284 aa), 98% identity in aa 1 - 283" /codon_start=1 /transl_table=11 /product="putative P-loop-containing kinase" /protein_id="NP_462233.1" /db_xref="GeneID:1254846" /translation="MVLMIVSGRSGSGKSVALRALEDMGFYCVDNLPVVLLPDLARTL ADRQISAAVSIDVRNMPESPEIFEQAMNNLPGAFSPQLLFLDADRNTLIRRYSDTRRL HPLSSKNLSLESAIDKESDLLEPLRSRADLIVDTSEMSVHELAEMLRTRLLGKREREL TMVFESFGFKHGIPIDADYVFDVRFLPNPHWDPKLRPMTGLDKPVAAFLDRHTEVHNF IYQTRSYLELWLPMLETNNRSYLTVAIGCTGGKHRSVYIAEQLADYFRSRGKNVQSRH RTLEKRKT" misc_feature 3486815..3487660 /gene="yhbJ" /locus_tag="STM3323" /note="P-loop ATPase protein family; Region: ATP_bind_2; pfam03668" /db_xref="CDD:397641" gene 3487649..3487938 /gene="ptsO" /locus_tag="STM3324" /db_xref="GeneID:1254847" regulatory 3487649..3487654 /regulatory_class="ribosome_binding_site" /gene="ptsO" /locus_tag="STM3324" /note="putative RBS for ptsO; RegulonDB:STMS1H003341" CDS 3487666..3487938 /gene="ptsO" /locus_tag="STM3324" /note="nitrogen related; exchanges phosphate with Enzyme I; similar to E. coli phosphocarrier protein HPr-like NPr, nitrogen related, exchanges phosphate with Enzyme I, Hpr (AAC76238.1); Blastp hit to AAC76238.1 (90 aa), 96% identity in aa 1 - 90" /codon_start=1 /transl_table=11 /product="phosphocarrier protein HPr-like NPr" /protein_id="NP_462234.1" /db_xref="GeneID:1254847" /translation="MTVKQTVEVTNKLGMHARPAMKLFELMQGFDAEVLLRNDEGTEA EANSVIALLMLDSAKGRQIEIEATGPQEVEALAAVIALFNSGFDED" misc_feature 3487666..3487935 /gene="ptsO" /locus_tag="STM3324" /note="PTS phosphocarrier protein NPr; Region: PRK10897" /db_xref="CDD:182819" misc_feature 3487681..3487692 /gene="ptsO" /locus_tag="STM3324" /note="dimerization domain swap beta strand [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature order(3487708..3487710,3487714..3487719,3487723..3487728, 3487738..3487740,3487747..3487749,3487804..3487815, 3487822..3487827) /gene="ptsO" /locus_tag="STM3324" /note="regulatory protein interface [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature 3487711..3487713 /gene="ptsO" /locus_tag="STM3324" /note="active site" /db_xref="CDD:238217" misc_feature 3487807..3487809 /gene="ptsO" /locus_tag="STM3324" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:238217" gene 3488176..3488819 /gene="yrbL" /locus_tag="STM3325" /db_xref="GeneID:1254848" regulatory 3488176..3488181 /regulatory_class="ribosome_binding_site" /gene="yrbL" /locus_tag="STM3325" /note="putative RBS for yrbL; RegulonDB:STMS1H003342" CDS 3488187..3488819 /gene="yrbL" /locus_tag="STM3325" /note="similar to E. coli orf, hypothetical protein (AAC76239.1); Blastp hit to AAC76239.1 (210 aa), 77% identity in aa 1 - 210" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462235.1" /db_xref="GeneID:1254848" /translation="MILLSKQTPLGAGRHRKCYTHPDNARRCIKVIYNRDHGGDKEIR RELSYYAHLSRYLTDWSAIPRYYGTVETDCGTGYVYDMITDFNGAPSITLTEFAAQCR YEEDVAVLRRLLKKLKRYLLDNHIVTMSLKPQNILCQRISESEVVPVVCDNLGESTFI PLATWSTWCCERKLERVWQRFIAQPALAVALERDAQPKDKKRLALTSHEA" misc_feature 3488187..3488816 /gene="yrbL" /locus_tag="STM3325" /note="PhoP regulatory network protein YrbL; Region: PRK10345" /db_xref="CDD:182395" gene complement(3488894..3489630) /gene="mtgA" /locus_tag="STM3326" /db_xref="GeneID:1254849" CDS complement(3488894..3489622) /gene="mtgA" /locus_tag="STM3326" /EC_number="2.4.2.-" /note="biosynthetic; similar to E. coli putative peptidoglycan enzyme (AAC76240.1); Blastp hit to AAC76240.1 (242 aa), 83% identity in aa 1 - 242" /codon_start=1 /transl_table=11 /product="peptidoglycan transglycosylase" /protein_id="NP_462236.1" /db_xref="GeneID:1254849" /translation="MSKRRIAPLTFLRRLLLRILAALAVFWGGGIALFSVVPVPFSAV MAERQISAWLGGEFGYVAHSDWVSMADISPWMGLAVIAAEDQKFPEHWGFDVPAIEKA LAHNERNESRIRGASTLSQQTAKNLFLWDGRSWVRKGLEAGLTLGIETVWSKKRILTV YLNIAEFGDGIFGVEAAAQRYFHKPASRLSLSEAALLAAVLPNPIRYKANAPSGYVRS RQAWIMRQMRQLGGESFMTRNQLN" misc_feature complement(3488924..3489532) /gene="mtgA" /locus_tag="STM3326" /note="glycosyltransferase; Provisional; Region: PRK13481; cl29529" /db_xref="CDD:475222" gene complement(3489619..3490288) /gene="yhbL" /locus_tag="STM3327" /db_xref="GeneID:1254850" CDS complement(3489619..3490272) /gene="yhbL" /locus_tag="STM3327" /note="similar to E. coli sigma cross-reacting protein 27A (SCRP-27A) (AAC76241.1); Blastp hit to AAC76241.1 (220 aa), 89% identity in aa 4 - 220" /codon_start=1 /transl_table=11 /product="sigma cross-reacting protein 27A (SCRP-27A)" /protein_id="NP_462237.1" /db_xref="GeneID:1254850" /translation="MKKIGVVLSGCGVYDGTEIHEAVLTLLAIARSGAQAVCFAPDKP QADVINHLTGEAMAETRNVLIEAARITRGDIRPLSQAQPEELDALIVPGGFGAAKNLS NFASQGSECRVDSDVVALAKAMHQSGKPLGFICIAPAMLPKIFDFPLRLTIGTDIDTA EVLEEMGAEHVPCPVDDIVVDEDNKVVTTPAYMLAQDIAQAASGIDKLVSRVLVLAE" misc_feature complement(3489622..3490272) /gene="yhbL" /locus_tag="STM3327" /note="isoprenoid biosynthesis glyoxalase ElbB; Region: PRK11780" /db_xref="CDD:236980" misc_feature complement(3489868..3489870) /gene="yhbL" /locus_tag="STM3327" /note="conserved cys residue [active]" /db_xref="CDD:153227" regulatory complement(3489625..3489630) /regulatory_class="ribosome_binding_site" /gene="yhbL" /locus_tag="STM3327" /note="putative RBS for mtgA; RegulonDB:STMS1H003343" regulatory complement(3490283..3490288) /regulatory_class="ribosome_binding_site" /gene="yhbL" /locus_tag="STM3327" /note="putative RBS for yhbL; RegulonDB:STMS1H003344" gene complement(3490499..3492847) /gene="arcB" /locus_tag="STM3328" /db_xref="GeneID:1254851" CDS complement(3490499..3492835) /gene="arcB" /locus_tag="STM3328" /EC_number="2.7.3.-" /note="senses redox conditions; similar to E. coli aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA (AAC76242.1); Blastp hit to AAC76242.1 (776 aa), 93% identity in aa 1 - 776" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with ArcA" /protein_id="NP_462238.1" /db_xref="GeneID:1254851" /translation="MKQIRMLAQYYVDLMMKLGLVRFSMLLALALVVLAIVVQMAVTM VLHGQVESIDVIRSIFFGLLITPWAVYFLSVVVEQLEESRQRLSRLVQKLEEMRERDL KLNVQLKDNIAQLNQEIADREKAEAELQETFEQLKVEIKEREEAQIQLEQQSSFLRSF LDASPDLVFYRNEDKEFSGCNRAMELLTGKSEKQLVHLKPEDVYSPEAAEKVIETDEK VFRHNVSLTYEQWLDYPDGRKACFEIRKVPYYDRVGKRHGLMGFGRDITERKRYQDAL ERASRDKTTFISTISHELRTPLNGIVGLSRILLDTDLTAEQEKYLKTIHVSAVTLGNI FNDIIDMDKMERRKVQLDNQPIDFTSFMADLENLSGLQAQQKGLRFVLEPTLPLPHKV ITDGTRLRQILWNLISNAVKFTQQGQVTVRARYDEGDMLHFEVEDSGIGIPQDEQDKI FAMYYQVKDSNGGKPATGTGIGLAVSRRLAKNMGGDITVSSLPGKGSTFTLTVHAPAV AEEVEDAFDEDDMPLPALHVLLVEDIELNVIVARSVLEKLGNSVDVAMTGKAALEMFV PGEYDLVLLDIQLPDMTGLDIARELTRRHTREDLPPLVALTANVLKDKKEYLDAGMDD VLSKPLSVPALTAMIKKFWDATDKEESTVTPEESDKAQALLDIPMLEQYIELVGPKLI TDGLAVFEKMMPGYLSVLESNLTARDKKGVVEEGHKIKGAAGSVGLRHLQQLGQQIQS PDLPAWEDNVVEWIEEMKQEWQHDVAVLKAWVANAEKK" misc_feature complement(3490502..3492835) /gene="arcB" /locus_tag="STM3328" /note="aerobic respiration control sensor protein ArcB; Provisional; Region: PRK11091" /db_xref="CDD:236842" regulatory complement(3492842..3492847) /regulatory_class="ribosome_binding_site" /gene="arcB" /locus_tag="STM3328" /note="putative RBS for arcB; RegulonDB:STMS1H003345" gene complement(3492929..3493876) /gene="yhcC" /locus_tag="STM3329" /db_xref="GeneID:1254852" CDS complement(3492929..3493858) /gene="yhcC" /locus_tag="STM3329" /note="similar to E. coli orf, hypothetical protein (AAC76243.1); Blastp hit to AAC76243.1 (309 aa), 94% identity in aa 1 - 307" /codon_start=1 /transl_table=11 /product="putative FeS oxidoreductase" /protein_id="NP_462239.1" /db_xref="GeneID:1254852" /translation="MQLQKLVNMFGGDLLRRYGQKVHKLTLHGGFSCPNRDGTIGRGG CTFCNVASFADEAQQHHSIAEQLAHQAHLVNRAKRYLAYFQAYTSTFAEVQVLRSMYQ QAVSQASIVGLCVGTRPDCVPQAVVDLLCEYKDQGYEVWLELGLQTAHDKTLRRINRG HDFACYQRTTRIARERGLKVCAHLIVGLPGEGQAECLQTMERVVETGVDGIKLHPLHI VKGSTMAKAWEAGRLNGIELDDYTLTAGEMIRHTPPEVIYHRISASARRPTLLAPLWC ENRWTGMVELDKYLNEHGVQGSALARPWIPPVA" misc_feature complement(3492953..3493843) /gene="yhcC" /locus_tag="STM3329" /note="radical SAM protein, TIGR01212 family; Region: TIGR01212" /db_xref="CDD:130279" regulatory complement(3493871..3493876) /regulatory_class="ribosome_binding_site" /gene="yhcC" /locus_tag="STM3329" /note="putative RBS for yhcC; RegulonDB:STMS1H003346" protein_bind 3494149..3494163 /note="putative binding site for Lrp, RegulonDB: STMS1H000259" /bound_moiety="Lrp" protein_bind 3494187..3494199 /note="putative binding site for Lrp, RegulonDB: STMS1H000261" /bound_moiety="Lrp" protein_bind 3494271..3494285 /note="putative binding site for Lrp, RegulonDB: STMS1H000258" /bound_moiety="Lrp" gene 3494517..3498990 /gene="gltB" /locus_tag="STM3330" /db_xref="GeneID:1254853" regulatory 3494517..3494522 /regulatory_class="ribosome_binding_site" /gene="gltB" /locus_tag="STM3330" /note="putative RBS for gltB; RegulonDB:STMS1H003347" CDS 3494530..3498990 /gene="gltB" /locus_tag="STM3330" /EC_number="1.4.1.13" /note="similar to E. coli glutamate synthase, large subunit (AAC76244.1); Blastp hit to AAC76244.1 (1517 aa), 95% identity in aa 32 - 1517" /codon_start=1 /transl_table=11 /product="glutamate synthase, large subunit" /protein_id="NP_462240.1" /db_xref="GeneID:1254853" /translation="MLYDKSLEKDNCGFGLIAHIEGEPSHKVVRTAIHALARMQHRGA ILADGKTGDGCGLLLQKPDRFFRIVAEERGWRLAKNYAVGMIFLNKDPELAAASRHIV EEELQQETLSIVGWRDVPTNEGVLGEIALSSLPRIEQIFVNAPAGWRPRDMERRLFIA RRRIEKRLQDDKDFYVCSLSNLVNIYKGLCMPADLPRFYLDLADLRLESAICLFHQRF STNTVPRWPLAQPFRYLAHNGEINTITGNRQWARARTYKFQTPLIPDLQSAAPFVNET GSDSSSLDNMLELLLAGGMDIIRAMRLLVPPAWQNNPDMDQDLRAFFDFNSMHMEPWD GPAGIVMSDGRFAACNLDRNGLRPARYVITKDKLITCASEVGIWDYQPDEVVEKGRVG PGELMVIDTRGGRILHSAETDDDLKSRHPYKEWMEKNVRRLVPFEELPDEEVGSRELD DDLLASYQKQFNYSAEELDSVIRVLGENGQEAVGSMGDDTPFAVLSSQPRIIYDYFRQ QFAQVTNPPIDPLREAHVMSLATSIGREMNVFCEAEGQAHRLSFKSPILLYSDFKQLT TMKEEHYRADRLDITFDVTETTLNATVKALCDKAEQMVRNGTVLLVLSDRNIGKNRLP VPAPMAVGAVQTRLVEQSLRCDANIIVETGSARDPHHFAVLLGFGATAIYPYLAYETL GRLIDTQAIAKNYRTVMQNYRNGINKGLYKIMSKMGISTIASYRCSKLFEAVGLHDDV VNLCFQGVVSRIGGASFDDFQQDLLNLSKRAWLARKPISPGGLLKYVHGGEYHAYNPD VVRTLQQAVQSGEYSDYQEYAKLVNERPASTLRDLLAIHPDGEAVTIDEVEPASELFK RFDTAAMSIGALSPEAHEALAEAMNSLGGNSNSGEGGEDPARYGTNKVSRIKQVASGR FGVTPAYLVNADVIQIKVAQGAKPGEGGQLPGDKVTPYIAKLRYSVPGVTLISPPPHH DIYSIEDLAQLIFDLKQVNPKAMISVKLVSEPGVGTIATGVAKAYADLITIAGYDGGT GASPLSSVKYAGCPWELGLVETQQALVANGLRHKIRLQVDGGLKTGVDIIKAAILGAE SFGFGTGPMVALGCKYLRICHLNNCATGVATQDDKLRKNHYHGLPFKVTNYFEFIARE VRELMASLGVTRLVDLIGRTDLLKELEGFTAKQQKLALSRLLETAEPHPGKALYCTEN NPPFDNGVLNAQLLQQAKPFVDARQSKTFWFDIRNTDRSVGASLSGYIAQTHGDQGLA SDPIKAHFSGTAGQSFGVWNAGGVELYLTGDANDYVGKGMAGGLIAIRPPVGSAFLSH KASIIGNTCLYGATGGRLYAAGRAGERFGVRNSGAITVVEGIGDNGCEYMTGGIVCVL GKTGVNFGAGMTGGFAYVLDEDGEFRKRVNPELVEVLDVDSLAIHEEHLRGLITEHVQ HTGSQRGEEILSRWSSFSTQFALVKPKSSDVKALLGHRSRSAAELRVQAQ" misc_feature 3494530..3498972 /gene="gltB" /locus_tag="STM3330" /note="glutamate synthase subunit alpha; Provisional; Region: gltB; PRK11750" /db_xref="CDD:236968" gene 3498989..3500418 /gene="gltD" /locus_tag="STM3331" /db_xref="GeneID:1254854" regulatory 3498989..3498994 /regulatory_class="ribosome_binding_site" /gene="gltD" /locus_tag="STM3331" /note="putative RBS for gltD; RegulonDB:STMS1H003348" CDS 3499000..3500418 /gene="gltD" /locus_tag="STM3331" /EC_number="1.4.1.13" /note="similar to E. coli glutamate synthase, small subunit (AAC76245.1); Blastp hit to AAC76245.1 (472 aa), 95% identity in aa 1 - 472" /codon_start=1 /transl_table=11 /product="glutamate synthase, small subunit" /protein_id="NP_462241.1" /db_xref="GeneID:1254854" /translation="MSQNVYQFIDLQRVDPPKKPLKIRKIEFVEIYEPFSEGQAKAQA DRCLSCGNPYCEWKCPVHNYIPNWLKLANEGRIFEAAELSHQTNTLPEVCGRVCPQDR LCEGSCTLHDEFGAVTIGNIERYINDKAFEMGWRPDITGVRQTDKRVAIIGAGPAGLA CADVLTRNGVKAVVFDRHPEIGGLLTFGIPAFKLEKEVMTRRREIFTGMGIEFKLNTE VGRDVQLEDLLKDYDAVFLGVGTYQSMRGGLENEDADGVFDALPFLIANTKQIMGFGE TSDEPYVSMEGKRVVVLGGGDTAMDCVRTSIRQGATHVTCAYRRDEENMPGSRREVKN AREEGVEFQFNVQPLGIEVNANGKVSGVKMVRTEMGEPDAKGRRRAEIVAGSEHVVPA DAVVMAFGFRPHSMEWLAKHSVELDSQGRIIAPERSDNAFQTSNPKIFAGGDIVRGSD LVVTAIAEGRKAADGIMNYLEV" misc_feature 3499015..3500415 /gene="gltD" /locus_tag="STM3331" /note="glutamate synthase small subunit family protein, proteobacterial; Region: gltD_gamma_fam; TIGR01318" /db_xref="CDD:273553" gene 3500615..3501728 /gene="yhcG" /locus_tag="STM3332" /db_xref="GeneID:1254855" regulatory 3500615..3500620 /regulatory_class="ribosome_binding_site" /gene="yhcG" /locus_tag="STM3332" /note="putative RBS for yhcG; RegulonDB:STMS1H003349" CDS 3500625..3501728 /gene="yhcG" /locus_tag="STM3332" /note="similar to E. coli orf, hypothetical protein (AAC76252.1); Blastp hit to AAC76252.1 (375 aa), 55% identity in aa 115 - 164" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462242.1" /db_xref="GeneID:1254855" /translation="MTNPTLAPQSDEYQQIHNGIVQLLDTARTQTVRSINTIMTATYW EMGRRIVEFEQGGEARAAYGEQLIDRLSQDLSQRYKRGFSASNLWQFKKFYLYFQKIE ILQTVSGESLHLAQLAKSFPLPWSAYVRLLSVKNPNARTFYEKETLRNGWSVRQLDRQ IATQFYERTLLSHDKSAMLQQPAPAEPNVLPEQAIRDPFILEFLNLKDEYSESDLEDA LLSHLMDFMLELGDDFAFVGRQRRLRIDDSWFRVDLLFFHRRLRCLLLVDLKVGKFGY ADAGQMNMYLNYAKEHWTMPGENPPVGLVLCAGKGAGEAHYALTGLPNTIMASEYKVQ LPDEKLLTDELIRSQTMLETQLTRGGSLTTEKN" misc_feature 3500625..3501659 /gene="yhcG" /locus_tag="STM3332" /note="Predicted nuclease of restriction endonuclease-like (RecB) superfamily, DUF1016 family [General function prediction only]; Region: YhcG; COG4804" /db_xref="CDD:443832" gene 3501797..3503098 /locus_tag="STM3333" /db_xref="GeneID:1254856" regulatory 3501797..3501805 /regulatory_class="minus_35_signal" /locus_tag="STM3333" /note="putative -35_signal for STM3333; RegulonDB:STMLTH004586" regulatory 3501824..3501832 /regulatory_class="minus_10_signal" /locus_tag="STM3333" /note="putative -10_signal for STM3333; RegulonDB:STMLTH004586" regulatory 3501837..3501842 /regulatory_class="ribosome_binding_site" /locus_tag="STM3333" /note="putative RBS for STM3333; RegulonDB:STMS1H003350" CDS 3501845..3503098 /locus_tag="STM3333" /note="similar to E. coli cytosine permease/transport (AAC73439.1); Blastp hit to AAC73439.1 (419 aa), 82% identity in aa 1 - 414" /codon_start=1 /transl_table=11 /product="putative purine-cytosine permease" /protein_id="NP_462243.1" /db_xref="GeneID:1254856" /translation="MSQDNNYSQGPVPLAARKGVIPLTFVMLGLTFFSASMWTGGTLG TGLSYNDFFLAVLFGNLLLGIYTAFLGYIGAKTGLSTHLLARYSFGVKGSWLPSLLLG GTQVGWFGVGVAMFAIPVSKATGIDANILIAVSGLLMTLTIFFGISALTILSIVAVPA IVILGSYSVWLAVSGVGGLEHLKTIVPQTPLDFSSALALVVGSFVSAGTLTADFVRFG RHAKSAVLIAMVAFFLGNSLMFIFGAAGAAAVGQADISDVMIAQGLLLPAIVVLGLNI WTTNDNALYASGLGFANITGLSSRTLSVVNGIIGTVCALWLYNNFVGWLTFLSSAIPP IGGVIIADYLLNRRRYADFNTVRFIPVNWIAILSVALGIAAGHYVPGIVPVNAVLGGV FSYILLNPLFNRSLAKSPEVSHAEQ" misc_feature 3501869..3503077 /locus_tag="STM3333" /note="cytosine permease; Provisional; Region: codB; PRK11017" /db_xref="CDD:236821" misc_feature order(3501929..3501931,3501938..3501940,3502667..3502669, 3502676..3502681) /locus_tag="STM3333" /note="Na binding site [ion binding]; other site" /db_xref="CDD:271377" misc_feature order(3501941..3501943,3502166..3502168,3502178..3502180, 3502451..3502456,3502460..3502462,3502682..3502684, 3502694..3502696) /locus_tag="STM3333" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:271377" gene 3503075..3504365 /locus_tag="STM3334" /db_xref="GeneID:1254857" regulatory 3503075..3503080 /regulatory_class="ribosome_binding_site" /locus_tag="STM3334" /note="putative RBS for STM3334; RegulonDB:STMS1H003351" CDS 3503085..3504365 /locus_tag="STM3334" /EC_number="3.5.4.1" /note="similar to E. coli cytosine deaminase (AAC73440.1); Blastp hit to AAC73440.1 (427 aa), 83% identity in aa 1 - 427" /codon_start=1 /transl_table=11 /product="putative cytosine deaminase" /protein_id="NP_462244.1" /db_xref="GeneID:1254857" /translation="MQNNNITIRQTRLQGHEGLWQITIENGRFSRIEPQEAASLPQGE VLDAEGGLAIPPFVEPHIHLDTTQTAGEPSWNQSGTLFEGIERWAERKAMLTHEDVKA RAMQTLKWQMANGIQYVRTHVDVSDPTLTALKAMLEVKQEVAPWVDLQIVAFPQEGVL SYPNGEALLEEAVRLGADVIGAIPHFEFTREYGVESLHKIFALAQKYDRLIDVHCDEI DDEQSRFVETVAALAHRDSMGARVTASHTTAMHSYNGAYASRLFRLLKMSGINFVANP LVNIHLQGRFDTYPKRRGVTRVKEMLEAGINVCFGHDDVFDPWYPLGTANMLQVLHMG LHVCQLMGYGQINDGLNLITIHSAKTLHLQDYGLSVGNAANLVILPAENGFDAVRRQT PARYSIRHGRVIAETVPSQTTLHLTQPEAVTFKR" misc_feature 3503085..3504362 /locus_tag="STM3334" /note="cytosine deaminase; Provisional; Region: PRK09230" /db_xref="CDD:181713" misc_feature order(3503265..3503267,3503271..3503273,3503724..3503726, 3503733..3503735,3503820..3503822,3504021..3504023) /locus_tag="STM3334" /note="active site" /db_xref="CDD:238618" gene complement(3504448..3504928) /gene="yhcH" /locus_tag="STM3335" /db_xref="GeneID:1254858" CDS complement(3504448..3504915) /gene="yhcH" /locus_tag="STM3335" /note="similar to E. coli orf, hypothetical protein (AAC76253.1); Blastp hit to AAC76253.1 (154 aa), 80% identity in aa 1 - 154" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462245.1" /db_xref="GeneID:1254858" /translation="MMMGEVQSLPSCGLHPRLLDALTLALAARPQEKAPGRYELQGDN VFMNVMQLTTQMPAEKKAELHEQYIDIQLLLTGVERIAFGMSGAARQCEEMHVEEDYQ LCSQIVDEQTITLQAGMFAVFMPGEPHKPGCAVGEPDDIKKVVVKVRASLLAA" misc_feature complement(3504457..3504915) /gene="yhcH" /locus_tag="STM3335" /note="N-acetylneuraminate anomerase; Region: acetylneur_anom; NF040884" /db_xref="CDD:468820" gene complement(3504912..3505798) /gene="nanK" /locus_tag="STM3336" /db_xref="GeneID:1254859" CDS complement(3504912..3505787) /gene="nanK" /locus_tag="STM3336" /note="similar to E. coli putative NAGC-like transcriptional regulator (AAC76254.1); Blastp hit to AAC76254.1 (302 aa), 75% identity in aa 12 - 302" /codon_start=1 /transl_table=11 /product="putative ManNAc kinase" /protein_id="NP_462246.1" /db_xref="GeneID:1254859" /translation="MTTLAIDIGGTKLAAALIDNNLRISQRRELPTPASKTPDALREA LKALVEPLRAEARQVAIASTGIIQEGMLLALNPHNLGGLLHFPLVQTLEAIAGLPTLA VNDAQAAAWAEYHALPDDIRDMVFITVSTGVGGGVVCDGKLLTGKGGLAGHLGHTLAD PHGPVCGCGRVGCVEAIASGRGMAAAARDDLAGCDAKTLFIRAGEGHQQARHLVSQSA QVIARMIADVKATTDCQCVVIGGSVGLAEGYLEQVRAFLMQEPAPYHVALSAARYRHD AGLLGAALLAQGDTL" misc_feature complement(3504960..3505787) /gene="nanK" /locus_tag="STM3336" /note="N-acetylmannosamine kinase; Provisional; Region: PRK05082" /db_xref="CDD:235338" regulatory complement(3504923..3504928) /regulatory_class="ribosome_binding_site" /gene="yhcH" /locus_tag="STM3335" /note="putative RBS for yhcH; RegulonDB:STMS1H003352" gene complement(3505784..3506484) /gene="nanE" /locus_tag="STM3337" /db_xref="GeneID:1254860" CDS complement(3505784..3506473) /gene="nanE" /locus_tag="STM3337" /note="similar to E. coli putative enzyme (AAC76255.1); Blastp hit to AAC76255.1 (229 aa), 80% identity in aa 1 - 227" /codon_start=1 /transl_table=11 /product="putative ManNAc-6P epimerase" /protein_id="NP_462247.1" /db_xref="GeneID:1254860" /translation="MSLLEQLDKNIAASGGLIVSCQPVPGSPLDKPEIVAAMALAAEQ AGAVAVRIEGIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGAAII AVDGTARQRPVAVEALLARIHHHHLLAMADCSSVDDGLACQRLGADIIGTTMSGYTTP DTPEEPDLPLVKALHDAGCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITRLEHICG WYNDALKKAAS" misc_feature complement(3505796..3506431) /gene="nanE" /locus_tag="STM3337" /note="putative N-acetylmannosamine-6-phosphate 2-epimerase; Region: PRK01130" /db_xref="CDD:234907" misc_feature complement(order(3505853..3505855,3505916..3505924, 3506003..3506005,3506015..3506017,3506078..3506080, 3506159..3506161,3506252..3506254,3506258..3506260, 3506321..3506323,3506408..3506410,3506414..3506416)) /gene="nanE" /locus_tag="STM3337" /note="putative active site cavity [active]" /db_xref="CDD:240080" regulatory complement(3505793..3505798) /regulatory_class="ribosome_binding_site" /gene="nanE" /locus_tag="STM3337" /note="putative RBS for nanK; RegulonDB:STMS1H003353" regulatory complement(3506479..3506484) /regulatory_class="ribosome_binding_site" /gene="nanE" /locus_tag="STM3337" /note="putative RBS for nanE; RegulonDB:STMS1H003354" gene complement(3506520..3508010) /gene="nanT" /locus_tag="STM3338" /db_xref="GeneID:1254861" CDS complement(3506520..3508010) /gene="nanT" /locus_tag="STM3338" /note="similar to E. coli sialic acid transporter (AAC76256.1); Blastp hit to AAC76256.1 (506 aa), 94% identity in aa 11 - 506" /codon_start=1 /transl_table=11 /product="MFS family sialic acid transport protein" /protein_id="NP_462248.1" /db_xref="GeneID:1254861" /translation="MSTSTQNIPWYRHLNRAQWRAFSAAWLGYLLDGFDFVLIALVLT EVQSEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVSSIILFSVGTLAC GFAPGYTTMFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSVGAVVA AQVYSLVVPVWGWRALFFIGILPIIFALWLRKNIPEAEDWKEKHAGKAPVRTMVDILY RGEHRIINILMTFAAAAALWFCFAGNLQNAAIVAGLGLLCAVIFISFMVQSSGKRWPT GVMLMLVVLFAFLYSWPIQALLPTYLKTELAYDPHTVANVLFFSGFGAAVGCCVGGFL GDWLGTRKAYVCSLLASQILIIPVFAIGGTNVWVLGLLLFFQQMLGQGIAGILPKLIG GYFDTDQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFSLTFVVILLI GLDMPSRVQRWLRPEALRTHDAIDDKPFSGAVPLGSGKGAFVKTKS" misc_feature complement(3506523..3508010) /gene="nanT" /locus_tag="STM3338" /note="putative sialic acid transporter; Provisional; Region: PRK03893" /db_xref="CDD:179668" gene complement(3508126..3509028) /gene="nanA" /locus_tag="STM3339" /db_xref="GeneID:1254862" CDS complement(3508126..3509019) /gene="nanA" /locus_tag="STM3339" /EC_number="4.1.3.3" /note="aldolase; similar to E. coli N-acetylneuraminate lyase (aldolase); catabolism of sialic acid; not K12? (AAC76257.1); Blastp hit to AAC76257.1 (297 aa), 90% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="N-acetylneuraminate lyase" /protein_id="NP_462249.1" /db_xref="GeneID:1254862" /translation="MAKALQGVMAALLTPFDHQQQLDSESLRRLVRFNIGQGIDGLYV GGSTGEAFVQSLAEREQVLEIVAEEAKGKITLIAHVGTVSTAESQQLASAAKRYGFDA VSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPALSGVKLTLDQINTLVTLPG VSALKQTSGDLFQMEQIRRAHPDLVLYNGYDEIFASGLLAGADGGIGSTYNIMGWRYQ GIVQALREGDVAKAQRLQTECNKVIDLLIKTGVFRGLKTVLHYMDVVSVPLCRKPFAP VDEKYLPALKALAQQLMEEKA" misc_feature complement(3508135..3509016) /gene="nanA" /locus_tag="STM3339" /note="N-acetylneuraminate lyase; Provisional; Region: PRK04147" /db_xref="CDD:179749" misc_feature complement(order(3508525..3508527,3508609..3508611, 3508876..3508884,3508891..3508893,3508987..3508989)) /gene="nanA" /locus_tag="STM3339" /note="inhibitor site; inhibition site" /db_xref="CDD:188641" misc_feature complement(order(3508402..3508404,3508525..3508527, 3508609..3508611,3508876..3508884,3508891..3508893)) /gene="nanA" /locus_tag="STM3339" /note="active site" /db_xref="CDD:188641" misc_feature complement(order(3508201..3508206,3508657..3508659, 3508669..3508671,3508690..3508695,3508765..3508770, 3508861..3508866,3508879..3508881)) /gene="nanA" /locus_tag="STM3339" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:188641" misc_feature complement(3508525..3508527) /gene="nanA" /locus_tag="STM3339" /note="catalytic residue [active]" /db_xref="CDD:188641" regulatory complement(3509023..3509028) /regulatory_class="ribosome_binding_site" /gene="nanA" /locus_tag="STM3339" /note="putative RBS for nanA; RegulonDB:STMS1H003355" gene complement(3509154..3509945) /gene="yhcK" /locus_tag="STM3340" /db_xref="GeneID:1254863" CDS complement(3509154..3509945) /gene="yhcK" /locus_tag="STM3340" /note="similar to E. coli putative FADA-type transcriptional regulator (AAC76258.1); Blastp hit to AAC76258.1 (263 aa), 87% identity in aa 1 - 263" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_462250.1" /db_xref="GeneID:1254863" /translation="MDVMNAFDSQAEDSPTSLGRSLRRRPLARKKLSEMVEEELEQMI RRHEFGEGEQLPSERELMAFFNVGRPSVREALAALKRKGLVQINNGERARVSRPSADT IISELSGMAKDFLTHPGGIAHFEQLRLFFESSLVRYAAEHATDEQIALLTKALEINSQ SLDDNALFIRSDVEFHRVLAEIPGNPIFMAIHVALLDWLIAARPSVPDRELHEHNNVS YQQHIVIVDAIRQRDPDKADRALQTHLNSVSATWHALGKKSQKMR" misc_feature complement(3509166..3509891) /gene="yhcK" /locus_tag="STM3340" /note="transcriptional regulator NanR; Provisional; Region: PRK03837" /db_xref="CDD:235166" gene complement(3510054..3510569) /gene="sspB" /locus_tag="STM3341" /db_xref="GeneID:1254864" CDS complement(3510054..3510554) /gene="sspB" /locus_tag="STM3341" /note="similar to E. coli stringent starvation protein B (AAC76260.1); Blastp hit to AAC76260.1 (165 aa), 89% identity in aa 1 - 165" /codon_start=1 /transl_table=11 /product="stringent starvation protein B" /protein_id="NP_462251.1" /db_xref="GeneID:1254864" /translation="MDLSQLTPRRPYLLRAFYEWLLDNQLTPHLVVDVMLPGVHVPME YARDGQIVLNIAPRAVGNLELSNDEVRFNARFGGVPRQVSVPLAAVLAIYARENGAGT MFEPEAAYDEDVVSLNDDDNTAGAESETVMSVIDGDKPDHDDDSSPDDEPPPPRGGRP ALRVVK" misc_feature complement(3510171..3510545) /gene="sspB" /locus_tag="STM3341" /note="ClpXP protease specificity-enhancing factor; Provisional; Region: PRK11798" /db_xref="CDD:236987" gene complement(3510560..3511210) /gene="sspA" /locus_tag="STM3342" /db_xref="GeneID:1254865" CDS complement(3510560..3511198) /gene="sspA" /locus_tag="STM3342" /note="regulator of transcription; similar to E. coli regulator of transcription; stringent starvation protein A (AAC76261.1); Blastp hit to AAC76261.1 (212 aa), 98% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="stringent starvation protein A" /protein_id="NP_462252.1" /db_xref="GeneID:1254865" /translation="MAVAANKRSVMTLFSGPTDIYSHQVRIVLAEKGVSFEIEHVEKD NPPQDLIDLNPNQSVPTLVDRELTLWESRIIMEYLDERFPHPPLMPVYPVARGESRLY MHRIEKDWYTLMNVIVNGSASEADSARKQLREELLAIAPVFGQKPYFLSDEFSLVDCY LAPLLWRLPQLGIEFSGAGAKELKGYMTRVFERDSFLASLTEAEREMRLGRG" misc_feature complement(3510566..3511198) /gene="sspA" /locus_tag="STM3342" /note="stringent starvation protein A; Provisional; Region: sspA; PRK09481" /db_xref="CDD:236537" regulatory complement(3510564..3510569) /regulatory_class="ribosome_binding_site" /gene="sspB" /locus_tag="STM3341" /note="putative RBS for sspB; RegulonDB:STMS1H003356" regulatory complement(3511205..3511210) /regulatory_class="ribosome_binding_site" /gene="sspA" /locus_tag="STM3342" /note="putative RBS for sspA; RegulonDB:STMS1H003357" gene complement(3511461..3512217) /locus_tag="STM3343" /db_xref="GeneID:1254866" CDS complement(3511461..3512213) /locus_tag="STM3343" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462253.1" /db_xref="GeneID:1254866" /translation="MLSNKWEFFITTVDDHVTGIRVDIGAIQDEKFDRLIHTGFLRVH YTNCYENGLPQPDETQSLNRIEDWLDEKGKTFPIWLVGVVTQQGWRDFVFMSEEDLNW EKTLDKLLAGGPEISFSYRESHNDKGNFYRQFLYPTRYDWNWIHDSRVCRGLQEQGDD LTLPRAIDYYATLPTEVAARDLAQDIAALPYGITLVSIRMNDPQQGFMASFISTDAPQ QWHMTEITCQLTDLAEKHGGSFDGWGAPVVQA" misc_feature complement(3511821..3512204) /locus_tag="STM3343" /note="Family of unknown function (DUF695); Region: DUF695; pfam05117" /db_xref="CDD:428315" misc_feature complement(3511485..3511784) /locus_tag="STM3343" /note="Regulator of ribonuclease activity B; Region: RraB; pfam06877" /db_xref="CDD:429168" regulatory complement(3512212..3512217) /regulatory_class="ribosome_binding_site" /locus_tag="STM3343" /note="putative RBS for STM3343; RegulonDB:STMS1H003358" gene complement(3512413..3512811) /gene="rpsI" /locus_tag="STM3344" /db_xref="GeneID:1254867" CDS complement(3512413..3512805) /gene="rpsI" /locus_tag="STM3344" /note="similar to E. coli 30S ribosomal subunit protein S9 (AAC76262.1); Blastp hit to AAC76262.1 (130 aa), 99% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S9" /protein_id="NP_462254.1" /db_xref="GeneID:1254867" /translation="MAENQYYGTGRRKSSAARVFIKPGNGKIVINQRSLEQYFGRETA RMVVRQPLELVDMVEKLDLYITVKGGGISGQAGAIRHGITRALMEYDESLRGELRKAG FVTRDARQVERKKVGLRKARRRPQFSKR" misc_feature complement(3512416..3512805) /gene="rpsI" /locus_tag="STM3344" /note="30S ribosomal protein S9; Reviewed; Region: rpsI; PRK00132" /db_xref="CDD:178888" regulatory complement(3512806..3512811) /regulatory_class="ribosome_binding_site" /gene="rpsI" /locus_tag="STM3344" /note="putative RBS for rpsI; RegulonDB:STMS1H003359" gene complement(3512821..3513264) /gene="rplM" /locus_tag="STM3345" /db_xref="GeneID:1254868" CDS complement(3512821..3513249) /gene="rplM" /locus_tag="STM3345" /note="similar to E. coli 50S ribosomal subunit protein L13 (AAC76263.1); Blastp hit to AAC76263.1 (142 aa), 100% identity in aa 1 - 142" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L13" /protein_id="NP_462255.1" /db_xref="GeneID:1254868" /translation="MKTFTAKPETVKRDWYVVDATGKTLGRLATELARRLRGKHKAEY TPHVDTGDYIIVLNADKVAVTGNKRTDKVYYHHTGHIGGIKQATFEEMIARRPERVIE IAVKGMLPKGPLGRAMFRKLKVYAGNEHNHAAQQPQVLDI" misc_feature complement(3512824..3513237) /gene="rplM" /locus_tag="STM3345" /note="Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]; Region: RplM; COG0102" /db_xref="CDD:439872" regulatory complement(3513259..3513264) /regulatory_class="ribosome_binding_site" /gene="rplM" /locus_tag="STM3345" /note="putative RBS for rplM; RegulonDB:STMS1H003360" gene complement(3513552..3514695) /gene="yhcM" /locus_tag="STM3346" /db_xref="GeneID:1254869" CDS complement(3513552..3514676) /gene="yhcM" /locus_tag="STM3346" /note="similar to E. coli orf, hypothetical protein (AAC76264.1); Blastp hit to AAC76264.1 (375 aa), 85% identity in aa 1 - 373" /codon_start=1 /transl_table=11 /product="putative ATPase" /protein_id="NP_462256.1" /db_xref="GeneID:1254869" /translation="MQSLSPTSRYLQALNEGTHQPDDVQKEAVDRLETLYQALTAKKS SATPPGGLIARLGKLLGKNEPDAQIPVRGLYMWGGVGRGKTWLMDLFYHSLPGERKLR LHFHRFMLRVHEELTALQGQIDPLDIIADRFKTETDVLCFDEFFVTDITDAMLLGGLM KALFARGITLVATSNIPPDELYRNGLQRARFLPAIDAIKQHCDIMNVDAGVDYRLRTL TQAHLWLTPLNDETRRQMDKLWLALAGAAREHAPTLEINHRSLSTLGVENQTLAVSFA TLCVEARSQHDYIALSRLFHTVLLFDVPVMTPLMENEARRFIALVDEFYERHVKLVVS AAAPLYEIYQGERLKFEFQRCLSRLQEMQSAEYLKREHMP" misc_feature complement(3513555..3514673) /gene="yhcM" /locus_tag="STM3346" /note="Cell division protein ZapE (Z ring-associated ATPase), AFG1 superfamily [Cell cycle control, cell division, chromosome partitioning]; Region: ZapE; COG1485" /db_xref="CDD:441094" regulatory complement(3514690..3514695) /regulatory_class="ribosome_binding_site" /gene="yhcM" /locus_tag="STM3346" /note="putative RBS for yhcM; RegulonDB:STMS1H003361" gene 3514856..3515267 /gene="yhcB" /locus_tag="STM3347" /db_xref="GeneID:1254870" regulatory 3514856..3514861 /regulatory_class="ribosome_binding_site" /gene="yhcB" /locus_tag="STM3347" /note="putative RBS for yhcB; RegulonDB:STMS1H003362" CDS 3514863..3515267 /gene="yhcB" /locus_tag="STM3347" /note="similar to E. coli orf, hypothetical protein (AAC76265.1); Blastp hit to AAC76265.1 (134 aa), 97% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462257.1" /db_xref="GeneID:1254870" /translation="MFMTWEYALIGLVVGIIIGAVAMRFGNRKLRQQQALQYELEKNK AELEEYREELVSHFARSAELLDTMAHDYRQLYQHMAKSSSSLLPEMSAESNPFRNRLA ESEASNDQAPVQMPRDYSEGASGLLRSGAKRD" misc_feature 3514869..3515264 /gene="yhcB" /locus_tag="STM3347" /note="DUF1043 family protein; Region: PRK11677" /db_xref="CDD:236953" gene 3515404..3516791 /gene="degQ" /locus_tag="STM3348" /db_xref="GeneID:1254871" regulatory 3515404..3515409 /regulatory_class="ribosome_binding_site" /gene="degQ" /locus_tag="STM3348" /note="putative RBS for degQ; RegulonDB:STMS1H003363" CDS 3515424..3516791 /gene="degQ" /locus_tag="STM3348" /EC_number="3.4.21.-" /note="similar to E. coli serine endoprotease (AAC76266.1); Blastp hit to AAC76266.1 (455 aa), 89% identity in aa 1 - 455" /codon_start=1 /transl_table=11 /product="serine endoprotease" /protein_id="NP_462258.1" /db_xref="GeneID:1254871" /translation="MKKHTQLLSALALSVGLTLSAPFPALASIPGQVPGQATLPSLAP MLEKVLPAVVSVKVEGTAAQSQKVPEEFKKFFGEDLPDQPSQPFEGLGSGVIIDAAKG YVLTNNHVINQAQKISIQLNDGREFDAKQIGGDDQSDIALLQIQNPSKLTQIAIADSD KLRVGDFAVAVGNPFGLGQTATSGIISALGRSGLNLEGLENFIQTDASINRGNSGGAL LNLNGELIGINTAILAPGGGSIGIGFAIPSNMAQTLAQQLIQFGEIKRGLLGIKGTEM TADIAKAFKLNVQRGAFVSEVLPNSGSAKAGVKSGDVIISLNGKQLNSFAELRSRIAT TEPGTKVKLGLLRDGKPLEVEVTLDSNTSSSASAEMIAPALQGATLSDGQLKDGTKGV KVDSVEKSSPAAQAGLQKDDVIIGVNRDRISSIAEMRKVMAAKPSIIALQVVRGNENI YLLLR" misc_feature 3515424..3516788 /gene="degQ" /locus_tag="STM3348" /note="serine endoprotease DegQ; Region: PRK10139" /db_xref="CDD:182262" gene 3516884..3517954 /gene="degS" /locus_tag="STM3349" /db_xref="GeneID:1254872" CDS 3516884..3517954 /gene="degS" /locus_tag="STM3349" /EC_number="3.4.21.-" /note="similar to E. coli protease (AAC76267.1); Blastp hit to AAC76267.1 (355 aa), 91% identity in aa 1 - 355" /codon_start=1 /transl_table=11 /product="periplasmic serine endoprotease" /protein_id="NP_462259.1" /db_xref="GeneID:1254872" /translation="MFVKLLRSVAIGLIVGAILLAVMPSLRKINPIAVPQFDSTDETP ASYNFAVRRAAPAVVNVYNRSMNSTAHNQLEIRTLGSGVIMDQRGYIITNKHVINDAD QIIVALQDGRVFEALLVGSDSLTDLAVLKINATGGLPTIPINTKRTPHIGDVVLAIGN PYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASINHGNSGGALVNSLGELMGINTL SFDKSNDGETPEGLGFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQQGSG MDPIQGIVVNEVTPNGPAALAGIQVNDLIISVNNKPAVSALETMDQVAEIRPGSVIPV VVMRDDKQLTFQVTVQEYPASN" misc_feature 3516884..3517948 /gene="degS" /locus_tag="STM3349" /note="serine endoprotease DegS; Region: PRK10898" /db_xref="CDD:182820" gene complement(3517988..3518719) /locus_tag="STM3350" /db_xref="GeneID:1254873" CDS complement(3517988..3518719) /locus_tag="STM3350" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462260.1" /db_xref="GeneID:1254873" /translation="MILFPQNEDTVMSEMVAFRQGTSMPSRETILHYVVETVNQITEL EPALHLLPWSGVNSAIYEQRFAQCYDEGLCAAQTSAPNVPQGILPSTDWAQGIGLLCF AAGYMSAGERPLTHNQLCDFVKQAAVGLSPIEGEAASGFSTVRSIALPVFRRLQRDGH ASRVLLLQTLLHLVAWKSASQYARQQAQRLLWMGGILGEGGEHSLLVLDKALREEAVG EKSLPALLIFTSFLAHFPAGPVFID" misc_feature complement(3518075..>3518347) /locus_tag="STM3350" /note="Triphosphoribosyl-dephospho-CoA synthetase [Coenzyme transport and metabolism]; Region: CitG; COG1767" /db_xref="CDD:441373" gene complement(3518739..3520046) /gene="oadB" /locus_tag="STM3351" /db_xref="GeneID:1254874" CDS complement(3518739..3520040) /gene="oadB" /locus_tag="STM3351" /EC_number="4.1.1.112" /note="putative sodium ion pump; oxaloacetate decarboxylase beta chain. (SW:DCOB_SALTY)" /codon_start=1 /transl_table=11 /product="oxaloacetate decarboxylase beta chain" /protein_id="NP_462261.1" /db_xref="GeneID:1254874" /translation="MESLNALLQGMGLMHLGAGQAIMLLVSLLLLWLAIAKKFEPLLL LPIGFGGLLSNIPEAGLALTALESLLAHHDAGQLAVIAAKLHCAPDVHAIKEALALAL PSVQNQMENLAVDMGYTPGVLALFYKVAIGSGVAPLVIFMGVGAMTDFGPLLANPRTL LLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLAPEL LGAIAVAAYSYMALVPLIQPPIMKALTSETERKIRMVQLRTVSKREKILFPVVLLMLV ALLLPDAAPLLGMFCFGNLMRESGVVERLSDTVQNGLINIVTIFLGLSVGAKLVADKF LQPQTLGILLLGVIAFGIGTAAGVLMAKLLNLCSKNKINPLIGSAGVSAVPMAARVSN KVGLESDAQNFLLMHAMGPNVAGVIGSAIAAGVMLKYVLAM" misc_feature complement(3518742..3520040) /gene="oadB" /locus_tag="STM3351" /note="oxaloacetate decarboxylase subunit beta; Provisional; Region: PRK15477" /db_xref="CDD:185374" regulatory complement(3520041..3520046) /regulatory_class="ribosome_binding_site" /gene="oadB" /locus_tag="STM3351" /note="putative RBS for oadB; RegulonDB:STMS1H003364" gene complement(3520053..3521835) /gene="oadA" /locus_tag="STM3352" /db_xref="GeneID:1254875" CDS complement(3520053..3521828) /gene="oadA" /locus_tag="STM3352" /EC_number="4.1.1.112" /note="putative sodium ion pump; oxaloacetate decarboxylase alpha chain. (SW:DCOA_SALTY)" /codon_start=1 /transl_table=11 /product="oxaloacetate decarboxylase alpha chain" /protein_id="NP_462262.1" /db_xref="GeneID:1254875" /translation="MTIAITDVVLRDAHQSLFATRLRLDDMLPIAAALDDVGYGSLEC WGGATFDACIRFLGEDPWLRLRELKKAMPKTPLQMLLRGQNLLGYRHYADDVVERFVE RAVKNGMDVFRVFDAMNDPRNMKAALQAVRSHGAHAQGTLSYTTSPAHTLQTWLDLTE QLLETGVDSIAIKDMSGILTPMAAYELVSEIKKRFEVRLHLHCHATTGMAEMALLKAI EAGVDGVDTAISSMSATYGHPATEALVATLAGTEHDTGLDILKLENIAAYFREVRKKY HAFEGQLKGYDSRILVAQVPGGMLTNLESQLKQQNAADKLDQVLAEIPRVREDLGFIP LVTPTSQIVGTQAVLNVLTGERYKTIAKETAGILKGEYGHTPVPVNAALQARVLEGGA PVTCRPADLLKPELAELEADVRRQAQEKGITLAGNAIDDVLTVALFPQIGLKFLENRN NPAAFEPLPQAEAAQPVAKAEKPAASGIYTVEVEGKAFVVKVSDGGDISQLTAAVPAA SSAPVQAAAPAGAGTPVTAPLAGNIWKVIATEGQTVAEGDVLLILEAMKMETEIRAAQ AGTVRGIAVKSGDAVSVGDTLMTLA" misc_feature complement(3520056..3521828) /gene="oadA" /locus_tag="STM3352" /note="oxaloacetate decarboxylase subunit alpha; Region: PRK14040" /db_xref="CDD:237592" regulatory complement(3521830..3521835) /regulatory_class="ribosome_binding_site" /gene="oadA" /locus_tag="STM3352" /note="putative RBS for oadA; RegulonDB:STMS1H003365" gene complement(3521844..3522103) /gene="oadG" /locus_tag="STM3353" /db_xref="GeneID:1254876" CDS complement(3521844..3522098) /gene="oadG" /locus_tag="STM3353" /note="putative sodium ion pump; oxaloacetate decarboxylase gamma chain. (SW:DCOG_SALTY)" /codon_start=1 /transl_table=11 /product="oxaloacetate decarboxylase gamma chain" /protein_id="NP_462263.1" /db_xref="GeneID:1254876" /translation="MTNAALLLGEGFTLMFLGMGFVLAFLFLLIFAIRGMSAAVNRFF PEPAPAPKAAPAAAAPVVDDFTRLKPVIAAAIHHHHRLNA" misc_feature complement(3521847..3522095) /gene="oadG" /locus_tag="STM3353" /note="oxaloacetate decarboxylase subunit gamma; Provisional; Region: PRK02919" /db_xref="CDD:235086" regulatory complement(3522098..3522103) /regulatory_class="ribosome_binding_site" /gene="oadG" /locus_tag="STM3353" /note="putative RBS for oadG; RegulonDB:STMS1H003366" gene complement(3522254..3522887) /locus_tag="STM3354" /db_xref="GeneID:1254877" CDS complement(3522254..3522871) /locus_tag="STM3354" /EC_number="4.2.1.32" /note="similar to E. coli L-tartrate dehydratase, subunit B (AAC76098.1); Blastp hit to AAC76098.1 (201 aa), 69% identity in aa 2 - 201" /codon_start=1 /transl_table=11 /product="putative tartrate dehydratase beta subunit" /protein_id="NP_462264.1" /db_xref="GeneID:1254877" /translation="MTKKILTTPIKDEDLADIKAGDIIYLNGHIVTCRDVAHRRLIEG GRELPVDVRGGAILHAGPIVRPIKGEDDKFEMVSVGPTTSMRMEKFEKEFIAQTGVKL IVGKGGMGKGTEEGCAEHKALHCVFPAGCAVVAAVCVEEIEDAQWRDLGMPETLWVCR VKEFGPLIVSIDTHGNNLFEQNKIIFNQRKEIVADEICQNVSFIK" misc_feature complement(3522257..3522871) /locus_tag="STM3354" /note="L(+)-tartrate dehydratase subunit beta; Validated; Region: PRK08228" /db_xref="CDD:236192" gene complement(3522871..3523781) /locus_tag="STM3355" /db_xref="GeneID:1254878" CDS complement(3522871..3523770) /locus_tag="STM3355" /EC_number="4.2.1.32" /note="similar to E. coli L-tartrate dehydratase, subunit A (AAC76097.1); Blastp hit to AAC76097.1 (303 aa), 54% identity in aa 6 - 299" /codon_start=1 /transl_table=11 /product="putative tartrate dehydratase alpha subunit" /protein_id="NP_462265.1" /db_xref="GeneID:1254878" /translation="MSKSEQISHMTDVMAKFVGYTGKVLPDDVTAKLEDLHKKETSKL ADVIFTTMIENQRLAKELDRPSCQDTGVIQFLVECGTNFPLIGELEALLREAVIKATV DSPLRHNSVETFDEYNTGKNVGKGTPTVFWEIVPNSDQCSIYTYMAGGGCSLPGKAMV LMPGAGYEGVTRFVLDVMTSYGLNACPPLLVGVGVATSVETAALLSKKALMRPIGSHN ENERAASLEKMLEDGINKIGLGPQGMSGNTSVMGVNIENTARHPSTIGVAVNVGCWSH RKGHIVFDKDLNYTITSHSGVNF" misc_feature complement(3522880..3523770) /locus_tag="STM3355" /note="tartrate dehydratase subunit alpha; Validated; Region: PRK08230" /db_xref="CDD:181309" regulatory complement(3522882..3522887) /regulatory_class="ribosome_binding_site" /locus_tag="STM3354" /note="putative RBS for STM3354; RegulonDB:STMS1H003367" regulatory complement(3523776..3523781) /regulatory_class="ribosome_binding_site" /locus_tag="STM3355" /note="putative RBS for STM3355; RegulonDB:STMS1H003368" gene complement(3523803..3525075) /locus_tag="STM3356" /db_xref="GeneID:1254879" CDS complement(3523803..3525071) /locus_tag="STM3356" /note="similar to E. coli putative transport protein (AAC75352.1); Blastp hit to AAC75352.1 (610 aa), 38% identity in aa 9 - 199, 34% identity in aa 441 - 610, 23% identity in aa 35 - 196, 22% identity in aa 425 - 594" /codon_start=1 /transl_table=11 /product="putative cation transporter" /protein_id="NP_462266.1" /db_xref="GeneID:1254879" /translation="MEPITLTLCLLVFAIVMFVWEKVPLAVTSMIVCVALVITGVLNI KQAFAGFIDTNVILFVAMFIVGGALFETGMANKVGGVITRFAKTEKQLIFTIMVVVGL MSGVLSNTGTAAVLIPVVIGVAAKSGFSRSRLLMPLVFAAALGGNLSLIGAPGNLIAQ SALQNIGGGFGFFEYAKIGLPMLICGILYFLTIGYRFLPNNATGGEVGSVGVQRDYSH VPQWKQRLSLVVLIATILGMIFEKKIGVSLAVTGCIGALVLVVSGVLTEKQAYKAIDS QTIFIFGGTLALAKALEMTGAGKLVADYVIGMLGQNSSPFMLLIAVFALSVVMTNFMS NTATTALLVPVSLSIAAGMGADPRAVLMATVIGGSCAYATPIGMPANMMVLSAGGYKF VDYAKAGIPLIIVSTIVSLILLPILFPFHP" misc_feature complement(3523818..3525050) /locus_tag="STM3356" /note="Permease SLC13 (solute carrier 13). The sodium/dicarboxylate cotransporter NaDC-1 has been shown to translocate Krebs cycle intermediates such as succinate, citrate, and alpha-ketoglutarate across plasma membranes rabbit, human, and rat kidney. It is...; Region: SLC13_permease; cd01115" /db_xref="CDD:238535" misc_feature complement(order(3523836..3523874,3523962..3524021, 3524073..3524120,3524196..3524252,3524295..3524339, 3524355..3524393,3524502..3524546,3524607..3524678, 3524688..3524741,3524745..3524795,3524862..3524915, 3524958..3524999,3525018..3525029)) /locus_tag="STM3356" /note="transmembrane helices; other site" /db_xref="CDD:238535" regulatory complement(3525070..3525075) /regulatory_class="ribosome_binding_site" /locus_tag="STM3356" /note="putative RBS for STM3356; RegulonDB:STMS1H003369" gene complement(3525282..3525953) /locus_tag="STM3357" /db_xref="GeneID:1254880" CDS complement(3525282..3525947) /locus_tag="STM3357" /note="similar to E. coli orf, hypothetical protein (AAC74613.1); Blastp hit to AAC74613.1 (228 aa), 23% identity in aa 15 - 214" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_462267.1" /db_xref="GeneID:1254880" /translation="MQKPKLGKIKLLSAKEQVAAVLRKAILSRELVEGQEITLEGIAG MVGVSSMPVREAFQILAADGLIKVRPNKGAVVLGINEQTIREHYEIRALLESEAVAKA SRPGSDISRIAQVHYAAEKALAENNSAEYSDLNQAFHMEIWNVAGNEKMKMLLCNMWN GLSMGHKVTEEEYAVISIQEHKSILQALELHDETLARQRMREHIIRSMENMLTRYVGD PSA" misc_feature complement(3525312..3525911) /locus_tag="STM3357" /note="DNA-binding transcriptional regulator, GntR family [Transcription]; Region: GntR; COG1802" /db_xref="CDD:441407" gene complement(3525934..3526567) /locus_tag="STM3358" /db_xref="GeneID:1254881" CDS complement(3525934..3526563) /locus_tag="STM3358" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_462268.1" /db_xref="GeneID:1254881" /translation="MKKIQRTQTRDHITQMLRYEILSGNIKAGEELAQESIAEQLGLS RMPVREALQSLEQEGFLIRLPNRHMQVAHLEADRVSHIFRVIAAMAAEMFSLIPSEVG DALLIRAQALAVAEDKSCELECHAMLISYVNNRYLEKVYQQFLDGYVSYVILHLKKDN QESAQLFAELADVIRQGRRDEIGQVMQRYFLSLAEIMRQHMKDWESAEA" misc_feature complement(3525946..3526563) /locus_tag="STM3358" /note="DNA-binding transcriptional regulator, GntR family [Transcription]; Region: GntR; COG1802" /db_xref="CDD:441407" regulatory complement(3525948..3525953) /regulatory_class="ribosome_binding_site" /locus_tag="STM3358" /note="putative RBS for STM3357; RegulonDB:STMS1H003370" regulatory complement(3526562..3526567) /regulatory_class="ribosome_binding_site" /locus_tag="STM3358" /note="putative RBS for STM3358; RegulonDB:STMS1H003371" gene complement(3526683..3527727) /gene="mdh" /locus_tag="STM3359" /db_xref="GeneID:1254882" CDS complement(3526683..3527621) /gene="mdh" /locus_tag="STM3359" /EC_number="1.1.1.37" /note="malate dehydrogenase. (SW:MDH_SALTY)" /codon_start=1 /transl_table=11 /product="malate dehydrogenase" /protein_id="NP_462269.1" /db_xref="GeneID:1254882" /translation="MKVAVLGAAGGIGQALALLLKNQLPSGSELSLYDIAPVTPGVAV DLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVARKPGMDRSDLFNVNAGIVKNLV QQIAKTCPKACVGIITNPVNTTVAIAAEVLKKAGVYDKNKLFGVTTLDIIRSNTFVAE LKGKLPTEVEVPVIGGHSGVTILPLLSQIPGVSFTEQEAAELTKRIQNAGTEVVEAKA GGGSATLSMGQAAARFGLSLVRALQGEKGVVECAYVEGDGQYARFFSQPLLLGKNGVE ERKSIGTLSAFEQHSLDAMLDTLKKDIQLGEDFINK" misc_feature complement(3526692..3527621) /gene="mdh" /locus_tag="STM3359" /note="Glyoxysomal and mitochondrial malate dehydrogenases; Region: MDH_glyoxysomal_mitochondrial; cd01337" /db_xref="CDD:133422" misc_feature complement(order(3526941..3526943,3526953..3526955, 3527091..3527093,3527175..3527177,3527184..3527186, 3527265..3527267,3527271..3527273,3527331..3527333, 3527340..3527342,3527352..3527354,3527385..3527390, 3527394..3527396,3527520..3527522,3527586..3527597)) /gene="mdh" /locus_tag="STM3359" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:133422" misc_feature complement(order(3526935..3526937,3526944..3526955, 3526971..3526976,3526986..3526988,3526995..3526997, 3527154..3527156,3527163..3527168,3527475..3527483, 3527487..3527492,3527580..3527582)) /gene="mdh" /locus_tag="STM3359" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:133422" misc_feature complement(order(3526992..3526994,3527091..3527093, 3527163..3527165,3527265..3527267,3527361..3527363, 3527379..3527381)) /gene="mdh" /locus_tag="STM3359" /note="Substrate binding site [chemical binding]; other site" /db_xref="CDD:133422" protein_bind complement(3527621..3527683) /gene="mdh" /locus_tag="STM3359" /note="putative binding site for ArcA, RegulonDB: STMS1H000015" /bound_moiety="ArcA" regulatory complement(3527628..3527633) /regulatory_class="ribosome_binding_site" /gene="mdh" /locus_tag="STM3359" /note="putative RBS for mdh; RegulonDB:STMS1H003372" regulatory complement(3527700..3527708) /regulatory_class="minus_10_signal" /gene="mdh" /locus_tag="STM3359" /note="putative -10_signal for mdh; RegulonDB:STMLTH004587" protein_bind complement(3527715..3527735) /note="putative binding site for CRP, RegulonDB: STMS1H000040" /bound_moiety="CRP" regulatory complement(3527719..3527727) /regulatory_class="minus_35_signal" /gene="mdh" /locus_tag="STM3359" /note="putative -35_signal for mdh; RegulonDB:STMLTH004587" gene 3527894..3528505 /gene="argR" /locus_tag="STM3360" /db_xref="GeneID:1254883" regulatory 3527894..3527902 /regulatory_class="minus_35_signal" /gene="argR" /locus_tag="STM3360" /note="putative -35_signal for argR; RegulonDB:STMLTH004588" regulatory 3527918..3527926 /regulatory_class="minus_10_signal" /gene="argR" /locus_tag="STM3360" /note="putative -10_signal for argR; RegulonDB:STMLTH004588" protein_bind 3527971..3527989 /gene="argR" /locus_tag="STM3360" /note="putative binding site for ArgR, RegulonDB: STMS1H000026" /bound_moiety="ArgR" protein_bind 3527991..3528009 /gene="argR" /locus_tag="STM3360" /note="putative binding site for ArgR, RegulonDB: STMS1H000030" /bound_moiety="ArgR" regulatory 3528024..3528029 /regulatory_class="ribosome_binding_site" /gene="argR" /locus_tag="STM3360" /note="putative RBS for argR; RegulonDB:STMS1H003373" CDS 3528035..3528505 /gene="argR" /locus_tag="STM3360" /note="ArgR family; arginine repressor. (SW:ARGR_SALTY)" /codon_start=1 /transl_table=11 /product="repressor of arg regulon" /protein_id="NP_462270.1" /db_xref="GeneID:1254883" /translation="MRSSAKQEELVRAFKALLKEEKFSSQGEIVLALQDQGFENINQS KVSRMLTKFGAVRTRNAKMEMVYCLPAELGVPTTSSPLKNLVLDIDYNDAVVVIHTSP GAAQLIARLLDSLGKAEGILGTIAGDDTIFTTPASGFSVRDLYEAILELFEQEL" misc_feature 3528035..3528502 /gene="argR" /locus_tag="STM3360" /note="transcriptional regulator ArgR; Region: PRK05066" /db_xref="CDD:179922" gene 3528858..3529133 /gene="yhcN" /locus_tag="STM3361" /db_xref="GeneID:1254884" regulatory 3528858..3528863 /regulatory_class="ribosome_binding_site" /gene="yhcN" /locus_tag="STM3361" /note="putative RBS for yhcN; RegulonDB:STMS1H003374" CDS 3528870..3529133 /gene="yhcN" /locus_tag="STM3361" /note="similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 79% identity in aa 18 - 104" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_462271.1" /db_xref="GeneID:1254884" /translation="MKIKTTVATLSILSVLSFGAFAAEPISAEQAQNREAIGSVSVSA IGSSPMDMNAMLSKKADEQGATAYHITEARSGSNWHATAELYK" misc_feature 3528870..3529130 /gene="yhcN" /locus_tag="STM3361" /note="peroxide/acid stress response protein YhcN; Region: stress_YhcN; NF033776" /db_xref="CDD:411360" gene 3529230..3529503 /locus_tag="STM3362" /db_xref="GeneID:1254885" regulatory 3529230..3529235 /regulatory_class="ribosome_binding_site" /locus_tag="STM3362" /note="putative RBS for STM3362; RegulonDB:STMS1H003375" CDS 3529237..3529503 /locus_tag="STM3362" /note="similar to E. coli orf, hypothetical protein (AAC76270.1); Blastp hit to AAC76270.1 (104 aa), 53% identity in aa 18 - 104" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462272.1" /db_xref="GeneID:1254885" /translation="MKTKYIIASLGLATLLSFGANAAVHQVNAEQAQNLQPMGTISVS QIGSTPMDMRQEIVAKAEKAGANSYRIIELKEGDNWHATAELYK" misc_feature 3529237..3529500 /locus_tag="STM3362" /note="peroxide/acid stress response protein YhcN; Region: stress_YhcN; NF033776" /db_xref="CDD:411360" gene complement(3529563..3529848) /gene="yhcO" /locus_tag="STM3363" /db_xref="GeneID:1254886" CDS complement(3529563..3529835) /gene="yhcO" /locus_tag="STM3363" /note="similar to E. coli orf, hypothetical protein (AAC76271.1); Blastp hit to AAC76271.1 (90 aa), 76% identity in aa 1 - 90" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462273.1" /db_xref="GeneID:1254886" /translation="MNVYTFDFNDIKNQSDFYREFTQTFGLASEKVSDLDTLWDAVMS DILPLPLEIEFVHLPDKLRRRYGALILLFDEAEEELEGRLRFNVRH" misc_feature complement(3529566..3529829) /gene="yhcO" /locus_tag="STM3363" /note="Barstar, RNAse (barnase) inhibitor [Transcription]; Region: BarS; COG2732" /db_xref="CDD:442038" regulatory complement(3529843..3529848) /regulatory_class="ribosome_binding_site" /gene="yhcO" /locus_tag="STM3363" /note="putative RBS for yhcO; RegulonDB:STMS1H003376" gene complement(3530007..3531974) /gene="yhcP" /locus_tag="STM3364" /db_xref="GeneID:1254887" CDS complement(3530007..3531974) /gene="yhcP" /locus_tag="STM3364" /note="similar to E. coli orf, hypothetical protein (AAC76272.1); Blastp hit to AAC76272.1 (655 aa), 92% identity in aa 1 - 655" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462274.1" /db_xref="GeneID:1254887" /translation="MGIFSIANQHIRFAVKLACAIVLALFIGFHFQLETPRWAVLTAA IVAAGPAFAAGGEPYSGAIRYRGMLRIIGTFIGCIAALIIIISMIRAPLLMILVCCVW AGFCTWISSLVRIENSYAWGLSGYTALIIVITIQTEPLLTPQFALERCSEIVIGIGCA ILADLLFSPRSIKQEVDRELDSLLVAQYQLMQLCIKHGDSEEVDNAWGDLVRRTAALE GMRSNLNMESSRWVRANRRLKALNTLSLTLITQSCETYLIQNTRPELITDTFRELFET PVETVQDVHRQLKRMRRVIVWTGERETPVTLYSWVGAATRYLLLKRGVISNTKISATE EEILQGEPVVKVESAERHHAMVNFWRTTLSCILGTLFWLWTGWTSGNGAMVMIAVVTS LAMRLPNPRMVCIDFIYGTLAALPLGLLYFLVIIPNTQQSMLLLCLSLAVLGFFIGIE VQKRRLGSMGALASTINIIVLDNPMTFHFSQFLDSALGQIVGCMLAFIVILLVRDKSK DRTGRVLLNQFVSAAVSAMTTNVVRRKENRLPALYQQLFLLMNKFPGDLPKFRLALTM IIAHQRLRDAPIPVNEDLSVFHRQLRRTADHVISAGSDDKRRRYFGQLLDELDIYQEK LRIWEAPPQVTEPVKRLTGMLHKYQNALTDS" misc_feature complement(3530013..3531968) /gene="yhcP" /locus_tag="STM3364" /note="p-hydroxybenzoic acid efflux subunit AaeB; Provisional; Region: PRK10631" /db_xref="CDD:182600" gene complement(3531980..3532921) /gene="yhcQ" /locus_tag="STM3365" /db_xref="GeneID:1254888" CDS complement(3531980..3532912) /gene="yhcQ" /locus_tag="STM3365" /note="similar to E. coli putative membrane protein (AAC76273.1); Blastp hit to AAC76273.1 (310 aa), 92% identity in aa 1 - 310" /codon_start=1 /transl_table=11 /product="putative membrane located multidrug resistance protein" /protein_id="NP_462275.1" /db_xref="GeneID:1254888" /translation="MKTLTRKLSRTAITLVLVILAFIAIFRAWVYYTESPWTRDARFS ADVVAIAPDVAGLITHVNVHDNQLVKKDQVLFTIDQPRYQKALAEAEADVAYYQVLAQ EKRQEAGRRNRLGVQAMSREEIDQANNVLQTVLHQLAKAQATRDLAKLDLERTVIRAP ADGWVTNLNVYAGEFITRGSTAVALVKKNSFYVQAYMEETKLEGVRPGYRAEITPLGS NRVLKGTVDSVAAGVTNASSTSDAKGMATIDSNLEWVRLAQRVPVRIRLDEQQGNLWP AGTTATVVITGKQDRDASQDSFFRKLAHRLREFG" misc_feature complement(3531983..3532912) /gene="yhcQ" /locus_tag="STM3365" /note="p-hydroxybenzoic acid efflux pump subunit AaeA; Region: PRK10559" /db_xref="CDD:182548" regulatory complement(3532916..3532921) /regulatory_class="ribosome_binding_site" /gene="yhcQ" /locus_tag="STM3365" /note="putative RBS for yhcQ; RegulonDB:STMS1H003377" gene complement(3532920..3533132) /gene="yhcR" /locus_tag="STM3366" /db_xref="GeneID:1254889" CDS complement(3532920..3533123) /gene="yhcR" /locus_tag="STM3366" /note="similar to E. coli orf, hypothetical protein (AAC76274.1); Blastp hit to AAC76274.1 (90 aa), 98% identity in aa 24 - 90" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462276.1" /db_xref="GeneID:1254889" /translation="MSLFPVIVVFGLSFPPIFFELLLSLAIFWLVRRMLVPTGIYDFV WHPALFNTALYCCLFYLISRLFV" misc_feature complement(3532923..3533123) /gene="yhcR" /locus_tag="STM3366" /note="efflux system membrane protein; Provisional; Region: PRK11594" /db_xref="CDD:183220" regulatory complement(3533127..3533132) /regulatory_class="ribosome_binding_site" /gene="yhcR" /locus_tag="STM3366" /note="putative RBS for yhcR; RegulonDB:STMS1H003378" gene 3533305..3534234 /gene="yhcS" /locus_tag="STM3367" /db_xref="GeneID:1254890" CDS 3533305..3534234 /gene="yhcS" /locus_tag="STM3367" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC76275.1); Blastp hit to AAC76275.1 (309 aa), 95% identity in aa 1 - 309" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462277.1" /db_xref="GeneID:1254890" /translation="MERLKRMSVFAKVVEFGSFTAAARQLQMSVSSISQTVAKLEDEL QVKLLNRSTRSIGLTEAGKIYYQGCRRMLHEVQDVHEQLYAFNNTPIGTLRIGCSSTM AQNVLAGLTAKLLKEYPGLAVNLVTGIPAPDLIADGLDVVIRVGALQDSSLFSRRLGA MPMVVCAAKPYLAQYGVPEKPADLSSHSWLEYSVRPDNEFELIAPEGISTRLIPQGRF VTNDPMTLVRWLTAGTGIAYVPLMWVIDEINRGDLEILLPRYQSDPRPVYALYTEKDK LPLKVQVVINALTDYFVDVAHLFQGMHGRGKEK" misc_feature 3533305..3534231 /gene="yhcS" /locus_tag="STM3367" /note="HTH-type transcriptional activator AaeR; Region: PRK10632" /db_xref="CDD:182601" gene complement(3534357..3535802) /gene="tldD" /locus_tag="STM3368" /db_xref="GeneID:1254891" CDS complement(3534357..3535802) /gene="tldD" /locus_tag="STM3368" /note="similar to E. coli suppresses inhibitory activity of CsrA (AAC76276.1); Blastp hit to AAC76276.1 (481 aa), 94% identity in aa 1 - 481" /codon_start=1 /transl_table=11 /product="suppresses inhibitory activity of CsrA" /protein_id="NP_462278.1" /db_xref="GeneID:1254891" /translation="MSLNLVSEQLLAANGLNHQDLFAILGQLAERRLDYGDLYFQSSY HESWVLEDRIIKDGSYNIDQGVGVRAISGEKTGFAYADQISLLALEQSAQAARTIVRE NGEGKVKTLAAVAHQPLYTTLDPLQSMSREEKLDILRRVDKAAREADKRVQEVNASLT GVYELILVAATDGTLAADVRPLVRLSVSVQVEEDGKRERGASGGGGRFGYEYFLADLD GEVRADAWAKEAVRMALVNLSAVAAPAGTLPVVLGAGWPGVLLHEAVGHGLEGDFNRR GTSVFSGQIGEQVASALCTVVDDGTMMNRRGSVAIDDEGTPGQYNVLIENGVLKGYMQ DKLNARLMGAAPTGNGRRESYAHLPMPRMTNTYMLAGQSTPQEIIESVEYGIYAPNFG GGQVDITSGKFVFSTSEAYLIENGKVTTPVKGATLIGSGIETMQQISMVGNDLKLDNG VGVCGKEGQSLPVGVGQPTLKVDNLTVGGTA" misc_feature complement(3534360..3535802) /gene="tldD" /locus_tag="STM3368" /note="protease TldD; Provisional; Region: tldD; PRK10735" /db_xref="CDD:182685" gene complement(3535947..3539759) /gene="yhdP" /locus_tag="STM3369" /db_xref="GeneID:1254892" CDS complement(3535947..3539747) /gene="yhdP" /locus_tag="STM3369" /note="similar to E. coli orf, hypothetical protein (AAC76277.1); Blastp hit to AAC76277.1 (986 aa), 80% identity in aa 1 - 986" /codon_start=1 /transl_table=11 /product="putative protease" /protein_id="NP_462279.1" /db_xref="GeneID:1254892" /translation="MRRLPGILLLTGAALIVIAALLVSGLRLALPHLDAWRPAILNKI ESVTGVPVAASQLSASWQNFGPTLEAHNIHAALKDGGELSIKRVTLALDVWQSLLHMR WQFRDLTFWQLNFRTNTPLQSSDGEGIETSRLSDLFLRQFDHFDLRDSQISFLTLSGQ RAELAIPQLTWLNGKERHRAEGEVSLSSLTGQHGVMQVRMDLRDDDGLLNNGRVWLQA DDIDVKPWLGKWMQDNVALQTARFSLEGWMTLSKGEIAGGDVWLKQGGASWLGDNTTH TLSVDNLTAQISREQPGWQFYIPDTRITLDGKPWPSGALTVAWLPQQDVGGENHTRSD ELRIRASNLELAGLEALRPLAAKLSPVLGEIWQATQPSGKIATLALDIPLQATEKTRF QASWENLAWKQWKLLPGAEHFSGTLAGSVEDGQMKVAMQQAKMPYETVFRAPLEIENG VATLSWLKNENGFQLDGRDIDVKAKAVHARGGFRYLQPTGDEPWLGILAGISTDDGSQ AWRYFPENLMGKALVDYLSGAIQGGEADNATLVYGGNPHLFPYKHNEGQFEVLVPLRN ATFAFQPDWPALKNLNIELDFLNDGLWMRSDSVDLGGVKASKLAAAIPDYSKEKLLID ADINGPGKAVGPYFDETPLKDSLGSTLAELQLDGDVNARLHLDIPLDGEQVTAEGDVS LRNNSLFIKPLNSTLKNLNGKFSFVNGALKSGPLTANWFNQPLNLDFSTTEGAKAYQV AVNLNGNWQPTRMGVLPPQLNDALSGSVTWNGKVGIDLPYHADTTYHIELNGDLRNVS SHLPSPLNKPAGEAIPVNIQADGNLKSFALTGSAGSKNHFNSRWLLNQKLTLDRAIWT TDSRTIPPLPAQQGVELNLPALDGAQWLALFQKGAADNVSSSAEFPQRVTLRTPALSL GGQQWNNLSVVSAPSLNGTKIEAQGREVNATLLMRNHAPWLANIKYLYYNPGVAKTHA SSPTPTSPLASANTISFRGWPDLQLRCEECWLWGQKYGRIDGDFAIKGNTLTLANGLI DTGFARLKANGEWVNAPGNERTSLKGSLHGSNLDTAAGFFGISTPIQNASFNVDYDLH WRNPPWQPDEATLNGILRTRLGKGEFTDLSSGHAGQLLRLLSFDALLRKLRFDFRDTF SEGFYFDSIHSTAWIKDGVLHTDDTLVDGLEADIAMKGSVDLVRRRLDMEAVVAPEIS ATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYRITGPVDAPQINEVLRQPRK ESQQ" misc_feature complement(3538482..3539747) /gene="yhdP" /locus_tag="STM3369" /note="Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis]; Region: AsmA; COG2982" /db_xref="CDD:442221" misc_feature complement(3535950..3539018) /gene="yhdP" /locus_tag="STM3369" /note="AsmA2 domain-containing protein; Region: PRK10899" /db_xref="CDD:236789" regulatory complement(3539754..3539759) /regulatory_class="ribosome_binding_site" /gene="yhdP" /locus_tag="STM3369" /note="putative RBS for yhdP; RegulonDB:STMS1H003379" gene complement(3539854..3541334) /gene="cafA" /locus_tag="STM3370" /db_xref="GeneID:1254893" CDS complement(3539854..3541323) /gene="cafA" /locus_tag="STM3370" /EC_number="3.1.4.-" /note="similar to E. coli bundles of cytoplasmic filaments (AAC76279.1); Blastp hit to AAC76279.1 (495 aa), 96% identity in aa 7 - 495" /codon_start=1 /transl_table=11 /product="RNase G" /protein_id="NP_462280.1" /db_xref="GeneID:1254893" /translation="MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKG RVSRVLPGMQAAFVDIGLDKAAFLHASDIMPHTECVAGDEQKQFTVRDISELVRQGQD LMVQVVKDPLGTKGARLTTDITLPSRYLVFMPGASHVGVSQRIESESERERLKKVVAE YCDEQGGFIIRTAAEGVCEEDLASDAAYLKRVWTKVMERKKRPQTRYQMYGELALAQR VLRDFADAQLDRIRVDSRLTYESLLEFTAEYIPEMTSKLEHYSGHQPIFDLYDVENEI QRALERKVELKSGGYLIIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQ LRLRNLGGIIIIDFIDMNNEDHRRRVLHSLEQALSKDRVKTSINGFSPLGLVEMTRKR TRESVEHVLCNECPTCHGRGTVKTVETVCYEIMREIVRVHHAYDSDRFLVYASPAVAE ALKGEESHALAEVEIFVGKQVKVQVEPLYNQEQFDVVMM" misc_feature complement(3539857..3541323) /gene="cafA" /locus_tag="STM3370" /note="ribonuclease G; Provisional; Region: PRK11712" /db_xref="CDD:183285" gene complement(3541313..3541915) /gene="yhdE" /locus_tag="STM3371" /db_xref="GeneID:1254894" CDS complement(3541313..3541906) /gene="yhdE" /locus_tag="STM3371" /note="similar to E. coli orf, hypothetical protein (AAC76280.1); Blastp hit to AAC76280.1 (197 aa), 84% identity in aa 1 - 197" /codon_start=1 /transl_table=11 /product="putative inhibitor of septum formation" /protein_id="NP_462281.1" /db_xref="GeneID:1254894" /translation="MTTLYLASGSPRRQELLTQLGFSFEQVVPGIEEQRRAQESAQQY VVRLAREKAQAGVALVPRDLPVLGADTIVVLNGEVLEKPRDAAHAAEMLRLLSGNTHQ VMTAVALADSQQTLDCLVVTEVTFRTLSAQDITGYVASGEPLDKAGAYGIQGRGGCFV RKINGSYHAVVGLPLVETYELLSHFNALRDKRDKHDG" misc_feature complement(3541352..3541903) /gene="yhdE" /locus_tag="STM3371" /note="7-methyl-GTP pyrophosphatase and related NTP pyrophosphatases, Maf/HAM1 superfamily [Secondary metabolites biosynthesis, transport and catabolism]; Region: Maf; COG0424" /db_xref="CDD:440193" regulatory complement(3541329..3541334) /regulatory_class="ribosome_binding_site" /gene="yhdE" /locus_tag="STM3371" /note="putative RBS for cafA; RegulonDB:STMS1H003380" regulatory complement(3541910..3541915) /regulatory_class="ribosome_binding_site" /gene="yhdE" /locus_tag="STM3371" /note="putative RBS for yhdE; RegulonDB:STMS1H003381" gene complement(3541915..3542413) /gene="mreD" /locus_tag="STM3372" /db_xref="GeneID:1254895" CDS complement(3541915..3542406) /gene="mreD" /locus_tag="STM3372" /note="similar to E. coli rod shape-determining protein (AAC76281.1); Blastp hit to AAC76281.1 (162 aa), 94% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="rod shape-determining protein" /protein_id="NP_462282.1" /db_xref="GeneID:1254895" /translation="MVASYRSQGRWVIWLSFLIALLLQIMPWPDDIIVFRPNWVLLIL LYWILALPHRVNVGTGFVMGAILDLISGSTLGVRALSMSIVAYLVALKFQLFRNLALW QQALVVMLLSLAVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWLFLLMRKVRQQF AVQ" misc_feature complement(3541918..3542400) /gene="mreD" /locus_tag="STM3372" /note="rod shape-determining protein MreD; Provisional; Region: PRK11060" /db_xref="CDD:182936" gene complement(3542406..3543475) /gene="mreC" /locus_tag="STM3373" /db_xref="GeneID:1254896" CDS complement(3542406..3543458) /gene="mreC" /locus_tag="STM3373" /note="similar to E. coli rod shape-determining protein (AAC76282.1); Blastp hit to AAC76282.1 (367 aa), 89% identity in aa 1 - 366" /codon_start=1 /transl_table=11 /product="rod shape-determining protein" /protein_id="NP_462283.1" /db_xref="GeneID:1254896" /translation="MKPIFSRGPSLQIRLILAVLVALGVIIADSRLGTFSQIRTYMDT AVSPFYFISNGPRELLDSVSQTLASRDQLELENRALRQELLLKNSDLLMLGQYKQENA RLRELLGSPLRQDEQKMVTQVISTVNDPYSDQVVIDKGSVNGVYEGQPVISDKGVVGQ VVAVAKLTSRVLLICDATHALPIQVLRNDIRVIAAGNGCTDDLQLEHLPANTDIRVGD VLVTSGLGGRFPEGYPVAVVSSVKLDTQRAYTVIQARPTAGLQRLRYLLLLWGADRNG ANPMTPEEVHRVANERLMQMMPQVLPSPDAMGPPAPVPDPATGITQPSAGQTAPVSTQ PSPSGATTPPARAPGG" misc_feature complement(3542607..3543446) /gene="mreC" /locus_tag="STM3373" /note="rod shape-determining protein MreC; Region: mreC; TIGR00219" /db_xref="CDD:129323" misc_feature complement(<3542424..>3542636) /gene="mreC" /locus_tag="STM3373" /note="Herpes virus major outer envelope glycoprotein (BLLF1); Region: Herpes_BLLF1; pfam05109" /db_xref="CDD:282904" regulatory complement(3542408..3542413) /regulatory_class="ribosome_binding_site" /gene="mreD" /locus_tag="STM3372" /note="putative RBS for mreD; RegulonDB:STMS1H003382" regulatory complement(3543470..3543475) /regulatory_class="ribosome_binding_site" /gene="mreC" /locus_tag="STM3373" /note="putative RBS for mreC; RegulonDB:STMS1H003383" gene complement(3543523..3544583) /gene="mreB" /locus_tag="STM3374" /db_xref="GeneID:1254897" CDS complement(3543523..3544566) /gene="mreB" /locus_tag="STM3374" /note="HSP70 class molecular chaperones involved in cell morphogenesis; similar to E. coli regulator of ftsI, penicillin binding protein 3, septation function (AAC76283.1); Blastp hit to AAC76283.1 (367 aa), 100% identity in aa 21 - 367" /codon_start=1 /transl_table=11 /product="rod shape-determining protein" /protein_id="NP_462284.1" /db_xref="GeneID:1254897" /translation="MLKKFRGMFSNDLSIDLGTANTLIYVKGQGIVLNEPSVVAIRQD RAGSPKSVAAVGHDAKQMLGRTPGNIAAIRPMKDGVIADFFVTEKMLQHFIKQVHSNS FMRPSPRVLVCVPVGATQVERRAIRESAQGAGAREVFLIEEPMAAAIGAGLPVSEATG SMVVDIGGGTTEVAVISLNGVVYSSSVRIGGDRFDEAIINYVRRNYGSLIGEATAERI KHEIGSAYPGDEVREIEVRGRNLAEGVPRGFTLNSNEILEALQEPLTGIVSAVMVALE QCPPELASDISERGMVLTGGGALLRNLDRLLMEETGIPVVVAEDPLTCVARGGGKALE MIDMHGGDLFSEE" misc_feature complement(3543532..3544551) /gene="mreB" /locus_tag="STM3374" /note="rod shape-determining protein MreB; Provisional; Region: PRK13927" /db_xref="CDD:237562" regulatory complement(3544578..3544583) /regulatory_class="ribosome_binding_site" /gene="mreB" /locus_tag="STM3374" /note="putative RBS for mreB; RegulonDB:STMS1H003384" gene complement(3544874..3546831) /gene="yhdA" /locus_tag="STM3375" /db_xref="GeneID:1254898" CDS complement(3544874..3546814) /gene="yhdA" /locus_tag="STM3375" /note="similar to E. coli orf, hypothetical protein (AAC76284.1); Blastp hit to AAC76284.1 (646 aa), 84% identity in aa 1 - 646" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase" /protein_id="NP_462285.1" /db_xref="GeneID:1254898" /translation="MRLTTKFSAFITLLTGLTIFVTLIGCSLSFYNAVQYKYVSRVQA TATAIDTHLVTHDIVSLTPQIDELMIASDIVRVDLLQGERSVYSHSRARGYRPAGTSD MYRELVVPLIKHPGMSLRLAYQDPMGNYFHSLITTAPLTLAIGFIVLILFLSVRWLQR QLSGQELLEIRSTRILNGERGANVRGSVYEWPARTSSALDVLLSEIQFAHEQRSRLDT LIRSYAAQDTKTGLGNRLFFDNQLATLLEDQEKVGVHGVVMMIRLPDFNLLRDSLGGN QAEEQMFMLINLLSTFIMRYPGSLLARYHRSDFAVLLPHRTLKEAESIAGQLLKAVDA LPANKMLDRDDMVHIGICAWRSGQSTEQVMEHAEAAARNAALQGGNSWAIYDDTLPEK GRGNVRWRTLIEQMLNRGGPRLYQKPAVTREGRVHHRELMCRIYDGKEEVSSAEYMPM VLQFGLSEEYDRLQISRLITLLGYWPDENLAMQLTVESLIRPRFQRWLRDTLMQCEKS QRNRIIIELAEADVCQHISRLQPILRLVNALGVRVAVTQAGLTLVSTSWIKALNVELL KLHPSLVRNIEKRTENQLLVQSLVEACAGTPTQVYATGVRSRGEWQTLTKRGVAGGQG DFFASSQLLDTNVKKYSQRYSV" misc_feature complement(3544913..3546814) /gene="yhdA" /locus_tag="STM3375" /note="regulatory protein CsrD; Provisional; Region: PRK11059" /db_xref="CDD:236833" regulatory complement(3546826..3546831) /regulatory_class="ribosome_binding_site" /gene="yhdA" /locus_tag="STM3375" /note="putative RBS for yhdA; RegulonDB:STMS1H003385" gene 3547007..3547992 /gene="yhdH" /locus_tag="STM3376" /db_xref="GeneID:1254899" regulatory 3547007..3547012 /regulatory_class="ribosome_binding_site" /gene="yhdH" /locus_tag="STM3376" /note="putative RBS for yhdH; RegulonDB:STMS1H003386" CDS 3547018..3547992 /gene="yhdH" /locus_tag="STM3376" /note="similar to E. coli putative dehydrogenase (AAC76285.1); Blastp hit to AAC76285.1 (324 aa), 88% identity in aa 1 - 323" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_462286.1" /db_xref="GeneID:1254899" /translation="MQALILEQQDGKTLASVQHLEESQLPAGDVTVDVHWSSLNYKDA LAITGKGKIIRHFPMIPGIDFAGTVHASEDPRFHAGQEVLLTGWGVGENHWGGLAERA RVKGDWLVALPAGLSSRNAMIIGTAGFTAMLCVMALEDAGIRPQDGEVVVTGASGGVG STAVALLHKLGYQVAAVSGRESTHGYLKSLGANRILSRDEFAESRPLEKQLWAGAIDT VGDKVLAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRA EAWARLVKDLPESFYAQAATEITLADAPKFADAIINNQVQGRTLVKIK" misc_feature 3547018..3547986 /gene="yhdH" /locus_tag="STM3376" /note="Yhdh putative quinone oxidoreductases; Region: MDR_yhdh; cd08288" /db_xref="CDD:176248" misc_feature order(3547135..3547140,3547393..3547398,3547405..3547407, 3547477..3547479,3547483..3547494,3547549..3547557, 3547609..3547611,3547669..3547674,3547735..3547749, 3547810..3547821,3547945..3547947,3547954..3547956, 3547960..3547962) /gene="yhdH" /locus_tag="STM3376" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:176248" misc_feature order(3547633..3547635,3547714..3547716,3547732..3547743, 3547759..3547761,3547765..3547776,3547780..3547788, 3547792..3547815,3547822..3547827) /gene="yhdH" /locus_tag="STM3376" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176248" gene 3548092..3549109 /locus_tag="STM3377" /db_xref="GeneID:1254900" regulatory 3548092..3548097 /regulatory_class="ribosome_binding_site" /locus_tag="STM3377" /note="putative RBS for STM3377; RegulonDB:STMS1H003387" CDS 3548105..3549109 /locus_tag="STM3377" /note="similar to E. coli putative reductase (AAC75037.1); Blastp hit to AAC75037.1 (334 aa), 88% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="putative nitrate reductase" /protein_id="NP_462287.1" /db_xref="GeneID:1254900" /translation="MKKIRPLTEADVTAESAFFMQRRQVLKALGISAAALSLPSTAQA DLFSWFKGNDRPKAPAGKPLEFSQPAAWRSDLALTPEDKVTGYNNFYEFGLDKADPAA NAGSLKTEPWTLKISGEVAKPFTLDYDDLTHRFPLEERIYRMRCVEAWSMVVPWIGFP LYKLLAQAQPTSHAKYVAFETLYAPDDMPGQKDRFIGGGLKYPYVEGLRLDEAMHPLT LMTVGVYGKALPPQNGAPIRLIVPWKYGFKGIKSIVSIKLTRERPPTTWNLSAPNEYG FYANVNPHVDHPRWSQATERFIGSGGILDVQRQPTLLFNGYANEVASLYRGLNLRENF " misc_feature 3548105..3549106 /locus_tag="STM3377" /note="protein-methionine-sulfoxide reductase catalytic subunit MsrP; Region: PRK05363" /db_xref="CDD:235431" misc_feature order(3548366..3548380,3548540..3548542,3548645..3548647, 3548714..3548716,3548801..3548803,3548816..3548818, 3548840..3548842,3548849..3548851,3548855..3548857) /locus_tag="STM3377" /note="Moco binding site [active]" /db_xref="CDD:239025" misc_feature 3548540..3548542 /locus_tag="STM3377" /note="metal coordination site [ion binding]; other site" /db_xref="CDD:239025" gene 3549094..3549709 /locus_tag="STM3378" /db_xref="GeneID:1254901" regulatory 3549094..3549099 /regulatory_class="ribosome_binding_site" /locus_tag="STM3378" /note="putative RBS for STM3378; RegulonDB:STMS1H003388" CDS 3549110..3549709 /locus_tag="STM3378" /note="similar to E. coli orf, hypothetical protein (AAC75038.1); Blastp hit to AAC75038.1 (211 aa), 85% identity in aa 1 - 195" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462288.1" /db_xref="GeneID:1254901" /translation="MRLTAKQITWLKVCLHLAGFLPLLWLFWAINHGGLSADPVKDIQ HFTGRTALKFLLATLLVSPLARYAKQPLLIRTRRLLGLWCFVWATLHLTSYALLELGI HNLALLGSELISRPYLTLGIISWLVLLALTLTSTQFAQRKLGKRWQTLHNVVYLVAIL APIHYLWSVKILSPQPVIYAALALALLALRYRKFRQWWR" misc_feature 3549110..3549706 /locus_tag="STM3378" /note="protein-methionine-sulfoxide reductase heme-binding subunit MsrQ; Region: PRK05419" /db_xref="CDD:235452" gene 3550038..3550572 /gene="accB" /locus_tag="STM3379" /db_xref="GeneID:1254902" regulatory 3550038..3550046 /regulatory_class="minus_35_signal" /gene="accB" /locus_tag="STM3379" /note="putative -35_signal for accB; RegulonDB:STMLTH004589" regulatory 3550064..3550072 /regulatory_class="minus_10_signal" /gene="accB" /locus_tag="STM3379" /note="putative -10_signal for accB; RegulonDB:STMLTH004589" regulatory 3550089..3550094 /regulatory_class="ribosome_binding_site" /gene="accB" /locus_tag="STM3379" /note="putative RBS for accB; RegulonDB:STMS1H003389" CDS 3550102..3550572 /gene="accB" /locus_tag="STM3379" /EC_number="6.4.1.2" /note="carrier of biotin; similar to E. coli acetylCoA carboxylase, BCCP subunit; carrier of biotin (AAC76287.1); Blastp hit to AAC76287.1 (156 aa), 92% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="acetylCoA carboxylase, BCCP subunit" /protein_id="NP_462289.1" /db_xref="GeneID:1254902" /translation="MDIRKIKKLIELVEESGISELEISEGEESVRISRTTANAGFPVM QQAYAAPMMQQPALSNAVAPAATPAMEAPAAAEISGHIVRSPMVGTFYRTPSPDAKAF IEVGQKVNVGDTLCIVEAMKMMNQIEADKAGTVKAILVESGQPVEFDEPLVVIE" misc_feature 3550102..3550569 /gene="accB" /locus_tag="STM3379" /note="acetyl-CoA carboxylase, biotin carboxyl carrier protein; Region: BCCP; TIGR00531" /db_xref="CDD:273123" gene 3550574..3551932 /gene="accC" /locus_tag="STM3380" /db_xref="GeneID:1254903" regulatory 3550574..3550579 /regulatory_class="ribosome_binding_site" /gene="accC" /locus_tag="STM3380" /note="putative RBS for accC; RegulonDB:STMS1H003390" CDS 3550583..3551932 /gene="accC" /locus_tag="STM3380" /EC_number="6.3.4.14" /note="similar to E. coli acetyl CoA carboxylase, biotin carboxylase subunit (AAC76288.1); Blastp hit to AAC76288.1 (449 aa), 96% identity in aa 1 - 449" /codon_start=1 /transl_table=11 /product="acetyl CoA carboxylase" /protein_id="NP_462290.1" /db_xref="GeneID:1254903" /translation="MLDKIVIANRGEIALRILRACKELGIKTVAVHSSADRDLKHVLL ADETVCIGPAPSVKSYLNIPAIISAAEITGAVAIHPGYGFLSENANFAEQVERSGFIF IGPKADTIRLMGDKVSAITAMKKAGVPTVPGSDGPLGDDMNANRAHAKRIGYPVIIKA SGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSNDMVYMEKYLENPRHIEIQVLADG QGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELRRYIGERCAKACVDIGYRGAGTFE FLFENGEFYFIEMNTRIQVEHPVTEMITGVDLIKEQLRIAAGQPLSITQDEVVVRGHA VECRINAEDPNTFLPSPGKITRFHAPGGFGVRWESHIYAGYTVPPYYDSMIGKLICYG ENRDVAIARMKNALQELIIDGIKTNIDLQTRIMNDEHFQHGGTNIHYLEKKLGLQEK" misc_feature 3550583..3551929 /gene="accC" /locus_tag="STM3380" /note="acetyl-CoA carboxylase biotin carboxylase subunit; Validated; Region: PRK08591" /db_xref="CDD:236307" gene 3552029..3552283 /gene="yhdT" /locus_tag="STM3381" /db_xref="GeneID:1254904" regulatory 3552029..3552034 /regulatory_class="ribosome_binding_site" /gene="yhdT" /locus_tag="STM3381" /note="putative RBS for yhdT; RegulonDB:STMS1H003391" CDS 3552041..3552283 /gene="yhdT" /locus_tag="STM3381" /note="similar to E. coli orf, hypothetical protein (AAC76289.1); Blastp hit to AAC76289.1 (80 aa), 82% identity in aa 1 - 80" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462291.1" /db_xref="GeneID:1254904" /translation="MDARFVQAHKEARWALWLTLCYLAAWLVAAYLPGDSPGITGLPH WFEMACLLTPLVFILLCWAMVKFIYRDISLEDDDAA" misc_feature 3552041..3552280 /gene="yhdT" /locus_tag="STM3381" /note="hypothetical protein; Provisional; Region: PRK10633" /db_xref="CDD:182602" gene 3552260..3553724 /gene="panF" /locus_tag="STM3382" /db_xref="GeneID:1254905" regulatory 3552260..3552265 /regulatory_class="ribosome_binding_site" /gene="yhdT" /locus_tag="STM3381" /note="putative RBS for panF; RegulonDB:STMS1H003392" CDS 3552273..3553724 /gene="panF" /locus_tag="STM3382" /note="similar to E. coli sodium/pantothenate symporter (AAC76290.1); Blastp hit to AAC76290.1 (485 aa), 93% identity in aa 3 - 485" /codon_start=1 /transl_table=11 /product="SSS family sodium/pantothenate symporter" /protein_id="NP_462292.1" /db_xref="GeneID:1254905" /translation="MQLEVILPLVAYLVVVFGVSIYAMRKRTAGTFLNEYFLGSRSMG GIVLAMTLTATYISASSFIGGPGAAYKYGLGWVLLAMIQLPAVWLSLGILGKKFAILA RRYNAVTLNDMLFARYQSRLLVWLASLSLLVAFIGAMTVQFIGGARLLETAAGIPYET GLLIFGVSIALYTAFGGFRASVLNDTLQGLVMLVGTIVLLVGVIHAAGGLSQAVDTLH ALDPKLVTPQGADDILSPAFMTSFWVLVCFGVIGLPHTAVRCISYKDSKAVHRGIIIG TIVVAILMFGMHLAGALGRAVLPDLTVPDLVIPTLMVKVLPPFAAGIFLAAPMAAIMS TINAQLLQSSATIIKDLYLNLRPDQMQNEIRLKRMSAAITLLLGALLLLAAWKPPEMI IWLNLLAFGGLEAVFLWPLVLGLYWERANAAGALSAMIVGGVLYALLATFNIQYLGFH PIVPALLLSLLAFLIGNRFGSSASQATVLSTDK" misc_feature 3552273..3553706 /gene="panF" /locus_tag="STM3382" /note="Na+/panthothenate symporter [Coenzyme transport and metabolism]; Region: PanF; COG4145" /db_xref="CDD:443316" gene 3553736..3554617 /gene="prmA" /locus_tag="STM3383" /db_xref="GeneID:1254906" CDS 3553736..3554617 /gene="prmA" /locus_tag="STM3383" /EC_number="2.1.1.-" /note="similar to E. coli methylase for 50S ribosomal subunit protein L11 (AAC76291.1); Blastp hit to AAC76291.1 (293 aa), 95% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="methylation of 50S ribosomal subunit protein L11" /protein_id="NP_462293.1" /db_xref="GeneID:1254906" /translation="MPWIQLKLNTTGANAEELSDALMEAGAVSITFQDTHDTPVFEPL PGETRLWGDTDVIGLFDAETDMKDVVAILEQHPLLGAGFAHKIEQLEDKDWEREWMDN FHPMRFGERLWICPSWRDIPDENAVNVMLDPGLAFGTGTHPTTSLCLQWLDGLDLNGK TVIDFGCGSGILAIAALKLGAAKAIGIDIDPQAIQASRDNAERNGVSDRLELYLPKDQ PEAMKADVVVANILAGPLRELAPLISVLPVEGGLLGLSGILASQAESVCDAYAELFTL DPVVEKEEWCRITGRKK" misc_feature 3553742..3554593 /gene="prmA" /locus_tag="STM3383" /note="S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy); Region: AdoMet_MTases; cl17173" /db_xref="CDD:473071" gene 3555169..3556243 /gene="yhdG" /locus_tag="STM3384" /db_xref="GeneID:1254907" regulatory 3555169..3555177 /regulatory_class="minus_35_signal" /gene="yhdG" /locus_tag="STM3384" /note="putative -35_signal for yhdG; RegulonDB:STMLTH004590" protein_bind 3555195..3555211 /gene="yhdG" /locus_tag="STM3384" /note="putative binding site for FIS, RegulonDB: STMS1H000148" /bound_moiety="FIS" regulatory 3555196..3555204 /regulatory_class="minus_10_signal" /gene="yhdG" /locus_tag="STM3384" /note="putative -10_signal for yhdG; RegulonDB:STMLTH004590" regulatory 3555260..3555265 /regulatory_class="ribosome_binding_site" /gene="yhdG" /locus_tag="STM3384" /note="putative RBS for yhdG; RegulonDB:STMS1H003393" CDS 3555278..3556243 /gene="yhdG" /locus_tag="STM3384" /note="hypothetical 35.9 Kda protein in pmrA-fis intergenic region (ORF1). (SW:YHDG_SALTY); putative TIM-barrel enzyme" /codon_start=1 /transl_table=11 /product="possibly dehydrogenase" /protein_id="NP_462294.1" /db_xref="GeneID:1254907" /translation="MRIGQYQLRNRLIAAPMAGITDRPFRTLCYEMGAGLTVSEMMSS NPQVWESDKSRLRMVHVDEPGIRTVQIAGSDPVEMADAARINVESGAQIIDINMGCPA KKVNRKLAGSALLQYPDLVKSILIGVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAED CGIQALTIHGRTRACLFNGEAEYDSIRAVKQKVSIPIIANGDITNPHKARAVLDYTGA DALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCTHVRELHDFYGQAKGY RIARKHVSWYLQEHAPDDQFRRTFNAIEDASEQLEALEAYFENFA" misc_feature 3555278..3556240 /gene="yhdG" /locus_tag="STM3384" /note="tRNA-dihydrouridine synthase B; Provisional; Region: PRK10415" /db_xref="CDD:182440" misc_feature order(3555320..3555328,3555398..3555400,3555485..3555487, 3555566..3555568,3555692..3555694,3555782..3555784, 3555875..3555877,3555881..3555883,3555947..3555952) /gene="yhdG" /locus_tag="STM3384" /note="FMN binding site [chemical binding]; other site" /db_xref="CDD:239200" misc_feature order(3555485..3555487,3555575..3555580,3555692..3555694, 3555698..3555700,3555779..3555784,3555788..3555793, 3555878..3555883,3555950..3555952) /gene="yhdG" /locus_tag="STM3384" /note="active site" /db_xref="CDD:239200" misc_feature order(3555575..3555577,3555698..3555700,3555782..3555784, 3555788..3555790) /gene="yhdG" /locus_tag="STM3384" /note="catalytic residues [active]" /db_xref="CDD:239200" misc_feature order(3555578..3555580,3555692..3555694,3555779..3555781, 3555791..3555793,3555878..3555883) /gene="yhdG" /locus_tag="STM3384" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:239200" gene 3556262..3556565 /gene="fis" /locus_tag="STM3385" /db_xref="GeneID:1254908" regulatory 3556262..3556267 /regulatory_class="ribosome_binding_site" /gene="fis" /locus_tag="STM3385" /note="putative RBS for fis; RegulonDB:STMS1H003394" CDS 3556269..3556565 /gene="fis" /locus_tag="STM3385" /note="DNA-binding protein FIS (factor-for-inversion stimulation protein)(HIN recombinational enhancer binding protein). (SW:FIS_ECOLI)" /codon_start=1 /transl_table=11 /product="site-specific DNA inversion stimulation factor" /protein_id="NP_462295.1" /db_xref="GeneID:1254908" /translation="MFEQRVNSDVLTVSTVNSQDQVTQKPLRDSVKQALKNYFAQLNG QDVNDLYELVLAEVEQPLLDMVMQYTRGNQTRAALMMGINRGTLRKKLKKYGMN" misc_feature 3556278..3556562 /gene="fis" /locus_tag="STM3385" /note="DNA-binding transcriptional regulator Fis; Region: fis; PRK00430" /db_xref="CDD:179020" gene 3556638..3557535 /gene="yhdJ" /locus_tag="STM3386" /db_xref="GeneID:1254909" regulatory 3556638..3556643 /regulatory_class="ribosome_binding_site" /gene="yhdJ" /locus_tag="STM3386" /note="putative RBS for yhdJ; RegulonDB:STMS1H003395" CDS 3556651..3557535 /gene="yhdJ" /locus_tag="STM3386" /EC_number="2.1.1.72" /note="similar to E. coli putative methyltransferase (AAC76294.1); Blastp hit to AAC76294.1 (296 aa), 80% identity in aa 3 - 285" /codon_start=1 /transl_table=11 /product="putative methyltransferase" /protein_id="NP_462296.1" /db_xref="GeneID:1254909" /translation="MKAECEPQYFGDESKKIIHGDALTELKKLPSESIDLIFADPPYN IGKDFDGMVESWDEASFLAWLYECIDECHRVLKKHGTMYIMNSTENMPYIDLKCRTLF TIKSRIVWSYDSSGVQAKKYFGSMYEPILMMVKNPKSYTFNRDAILVETTTGAKRALI DYRKNPPQPYNQKKVPGNVWSFPRVRYLMDEYENHPTQKPSALLKRIILASSNPSDTV LDPFAGSFTTGAVAAASGRKFIGIELNNEYVKMGLRRLSVTSHYSENELAKVKKRKTQ NLSKKQRNVGINALSSEK" misc_feature 3556669..3557517 /gene="yhdJ" /locus_tag="STM3386" /note="adenine-specific DNA-methyltransferase; Region: PRK11524" /db_xref="CDD:183177" gene 3557606..3557782 /gene="yhdU" /locus_tag="STM3387" /db_xref="GeneID:1254910" regulatory 3557606..3557611 /regulatory_class="ribosome_binding_site" /gene="yhdU" /locus_tag="STM3387" /note="putative RBS for yhdU; RegulonDB:STMS1H003396" CDS 3557618..3557782 /gene="yhdU" /locus_tag="STM3387" /note="similar to E. coli orf, hypothetical protein (AAC76295.1); Blastp hit to AAC76295.1 (59 aa), 84% identity in aa 1 - 53" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462297.1" /db_xref="GeneID:1254910" /translation="MIRKYWWLVVFAVSVFLFDALLMQWIELMATEQDKCRNMDSVNP LKLINCTDLE" misc_feature 3557618..3557776 /gene="yhdU" /locus_tag="STM3387" /note="Protein of unknown function (DUF2556); Region: DUF2556; pfam10831" /db_xref="CDD:431515" gene 3557933..3560032 /locus_tag="STM3388" /db_xref="GeneID:1254911" CDS 3557933..3560032 /locus_tag="STM3388" /note="Diguanylate cyclase/phosphodiesterase domain 1; Diguanylate cyclase/phosphodiesterase domain 2; similar to E. coli orf, hypothetical protein (AAC74367.1); Blastp hit to AAC74367.1 (661 aa), 37% identity in aa 228 - 652, 39% identity in aa 144 - 171" /codon_start=1 /transl_table=11 /product="putative membrane domain protein involved in signal transduction" /protein_id="NP_462298.1" /db_xref="GeneID:1254911" /translation="MPVSEYNHILVAVSFAVAIFASYTALNMAGRVAGSARSNARIWL MGGGFALGVGIWAMHFVGMLAMDHAMNMRFDPFLTGLSMLIAIGSSLFALWLVSAEKL RLRRLLPGALVMGLGISAMHYTGMAALQFASIIVWNSAWVALSIIIALLASCGALWLT FRLRHEGTDVALRRAGAAVLMGIAIAGMHYAGMKAAHFPQNWPMEHRGVDSNWLAVLV SVVALTILGITLLVSLFDARLQARTALLASSLAQANQELAQLALHDTLTRLPNRVLLE DRLEQAISKANRENTSFALLFMDLDGFKTVNDAYGHDIGDKLLVAVTHRLNQPLSGQF TLARIGGDEFVLLAEVSAPDEAASLASALVHSIDAPFTIDPYELVVTLSVGIALYPLD GKNERELMFNADAAMYHTKHTGRNGYHFFQPSMNMLAQTQLQLMNDLWLALERQELRL VYQPKFQAPAGPIVGFEALLRWYHPKQGVLNPDQFLPLAEKTGLIVTIGSWVIDEACR QLREWHLQGYDLWSVAVNLSALQFEQPGLVDTITRSLARHSIRPDLLILEITETTAMN KPEQSVAILTRLTEMGVKASIDDFGTGYSSLLYLKRLPACELKIDRAFVHELSEAGDG ATIVAAIVALAKALNLQIVAEGVENETQQQFLTQLGCHTLQGFLLGKPRTAEEIARDI RDPANIFTRSIYNINSK" misc_feature 3557960..3559990 /locus_tag="STM3388" /note="Cyclic di-GMP metabolism protein, combines GGDEF and EAL domains with a 6TM membrane domain [Signal transduction mechanisms]; Region: COG5001" /db_xref="CDD:444025" gene complement(3560035..3560712) /gene="envR" /locus_tag="STM3389" /db_xref="GeneID:1254912" CDS complement(3560035..3560697) /gene="envR" /locus_tag="STM3389" /note="TetR/AcrR family; similar to E. coli putative transcriptional regulator (AAC76296.1); Blastp hit to AAC76296.1 (220 aa), 68% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="transcriptional repressor for envCD (acrEF)" /protein_id="NP_462299.1" /db_xref="GeneID:1254912" /translation="MAKKTKADALKTRQHLIETAIAQFALRGVANTTLNDIADAADVT RGAIYWHFENKTQLFNEVWLQQPPLRELIQDRLTGCWNDNPLQDLREKFIAALQYIAA VPRQQALMQILYHKCEFHNGMISEQAIREKMGFHHQSLLEVLQRCMDKKLISGSLDLD VILIILHGSFSGIVKNWLMNPTSYDLYKQAPALVDNVLKMLSPDGSVRQLMPNEQQAE EA" misc_feature complement(3560059..3560697) /gene="envR" /locus_tag="STM3389" /note="DNA-binding transcriptional regulator EnvR; Provisional; Region: PRK09975" /db_xref="CDD:182177" regulatory complement(3560707..3560712) /regulatory_class="ribosome_binding_site" /gene="envR" /locus_tag="STM3389" /note="putative RBS for envR; RegulonDB:STMS1H003397" gene 3561100..3562268 /gene="acrE" /locus_tag="STM3390" /db_xref="GeneID:1254913" regulatory 3561100..3561105 /regulatory_class="ribosome_binding_site" /gene="acrE" /locus_tag="STM3390" /note="putative RBS for acrE; RegulonDB:STMS1H003398" CDS 3561111..3562268 /gene="acrE" /locus_tag="STM3390" /note="similar to E. coli transmembrane protein affects septum formation and cell membrane permeability (AAC76297.1); Blastp hit to AAC76297.1 (385 aa), 88% identity in aa 1 - 380" /codon_start=1 /transl_table=11 /product="transmembrane protein affecting septum formation and cell membrane permeability" /protein_id="NP_462300.1" /db_xref="GeneID:1254913" /translation="MTKHARFSLLPSFIIFSAALLAGCNDQGDTQAHAGEPQVTVHVV ETAPLAVTTELPGRTSAFRIAEVRPQVSGIVLKRNFTEGSDVEAGQSLYQIDPATYQA DYDSAKGELAKSEAAAAIAHLTVKRYVPLVGTKYISQQEYDQAIADARQADAAVVAAK AAVESARINLAYTKVTSPISGRIGKSNVTEGALVTNGQSTELATVQQLDPIYVDVTQS SNDFMRLKQSVEQGNLHKDSASSTVQLVMENGQVYPIKGTLQFSDVTVDESTGSITLR AVFPNPQHSLLPGMFVRARIDEGVQPNAILVPQQGVTRTPRGDAMVMVVNDKSQVEAR NVVAAQAIGDKWLISEGLKPGDKVIVSGLQKARPGVQVKATTDAPAAKTAQ" misc_feature 3561111..3562232 /gene="acrE" /locus_tag="STM3390" /note="multidrug efflux RND transporter periplasmic adaptor subunit AcrA; Region: PRK15030" /db_xref="CDD:184990" gene 3562267..3565393 /gene="acrF" /locus_tag="STM3391" /db_xref="GeneID:1254914" regulatory 3562267..3562272 /regulatory_class="ribosome_binding_site" /gene="acrF" /locus_tag="STM3391" /note="putative RBS for acrF; RegulonDB:STMS1H003399" CDS 3562280..3565393 /gene="acrF" /locus_tag="STM3391" /note="similar to E. coli integral transmembrane protein; acridine resistance (AAC76298.1); Blastp hit to AAC76298.1 (1034 aa), 22% identity in aa 1 - 506; acriflavin resistance protein F" /codon_start=1 /transl_table=11 /product="RND family multidrug transport protein" /protein_id="NP_462301.1" /db_xref="GeneID:1254914" /translation="MANFFIRRPIFAWVLAIILMMAGALAIMQLPVAQYPTIAPPAVS ISATYPGADAQTVQDTVTQVIEQNMNGIDNLMYMSSTSDSAGSVTITLTFQSGTDPDI AQVQVQNKLQLATPLLPQEVQQQGISVEKSSSSFLMVAGFVSDNPNTTQDDISDYVAS NIKDSISRLNGVGDVQLFGAQYAMRIWLDANLLNKYQLTPVDVINQLKVQNDQIAAGQ LGGTPALPGQQLNASIIAQTRLKDPEEFGKVTLRVNTDGSVVHLKDVARIELGGENYN VVARINGKPASGLGIKLATGANALDTATAIKVKLAELQPFFPQGMKVVYPYDTTPFVK ISIHEVVKTLFEAIILVFLVMYLFLQNIRATLIPTIAVPVVLLGTFAVLAAFGYSINT LTMFGMVLAIGLLVDDAIVVVENVERVMMEDNLSPREATEKSMSQIQGALVGIAMVLS AVFIPMAFFGGSTGAIYRQFSITIVSAMALSVLVALILTPALCATLLKPVSAEHHEKK SGFFGWFNTRFDHSVNHYTNSVSGIVRNTGRYLIIYLLIVVGMAVLFLRLPTSFLPEE DQGVFLTMIQLPSGATQERTQKVLDQVTHYYLNNEKANVESVFTVNGFSFSGQGQNSG MAFVSLKPWEERNGEENSVEAVIARATRAFSQIRDGLVFPFNMPAIVELGTATGFDFE LIDQGGLGHDALTKARNQLLGMVAKHPDLLVRVRPNGLEDTPQFKLDVDQEKAQALGV SLSDINETISAALGGYYVNDFIDRGRVKKVYVQADAQFRMLPGDINNLYVRSANGEMV PFSTFSSARWIYGSPRLERYNGMPSMELLGEAAPGRSTGEAMSLMENLASQLPNGIGY DWTGMSYQERLSGNQAPALYAISLIVVFLCLAALYESWSIPFSVMLVVPLGVVGALLA ASLRGLNNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMEKEGRGLIEATLEASRMRLR PILMTSLAFILGVMPLVISRGAGSGAQNAVGTGVMGGMLTATLLAIFFVPVFFVVVKR RFNRHHD" misc_feature 3562280..3565390 /gene="acrF" /locus_tag="STM3391" /note="multidrug efflux RND transporter permease subunit AcrB; Region: PRK15127" /db_xref="CDD:185081" gene 3565618..3565850 /gene="yhdV" /locus_tag="STM3392" /db_xref="GeneID:1254915" regulatory 3565618..3565623 /regulatory_class="ribosome_binding_site" /gene="yhdV" /locus_tag="STM3392" /note="putative RBS for yhdV; RegulonDB:STMS1H003400" CDS 3565629..3565850 /gene="yhdV" /locus_tag="STM3392" /note="similar to E. coli orf, hypothetical protein (AAC76299.1); Blastp hit to AAC76299.1 (73 aa), 98% identity in aa 1 - 73" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_462302.1" /db_xref="GeneID:1254915" /translation="MKRLIPVALLTTLLAGCAHDSPCVPVYDDQGRLVHTNTCMKGTT QDNWETAGAIAGGAAAVAGLTMGIIALSK" misc_feature 3565629..>3565730 /gene="yhdV" /locus_tag="STM3392" /note="Putative periplasmic lipoprotein; Region: DUF1425; cl12345" /db_xref="CDD:472303" gene complement(3566629..3566750) /gene="rrfF" /locus_tag="STM3393" /db_xref="GeneID:1254916" rRNA complement(3566629..3566750) /gene="rrfF" /locus_tag="STM3393" /product="5S ribosomal RNA" /db_xref="GeneID:1254916" gene complement(3566791..3566863) /gene="thrV" /locus_tag="STM3394" /db_xref="GeneID:1254917" tRNA complement(3566791..3566863) /gene="thrV" /locus_tag="STM3394" /product="tRNA-Thr" /db_xref="GeneID:1254917" gene complement(3566874..3566995) /gene="rrfD" /locus_tag="STM3395" /db_xref="GeneID:1254918" rRNA complement(3566874..3566995) /gene="rrfD" /locus_tag="STM3395" /product="rRNA" /db_xref="GeneID:1254918" gene complement(3567085..3570078) /gene="rrlD" /locus_tag="STM3396" /db_xref="GeneID:1254919" rRNA complement(3567085..3570078) /gene="rrlD" /locus_tag="STM3396" /product="23S ribosomal RNA" /db_xref="GeneID:1254919" gene complement(3570314..3570386) /locus_tag="STM3397" /db_xref="GeneID:1254920" tRNA complement(3570314..3570386) /locus_tag="STM3397" /product="tRNA-Gln" /db_xref="GeneID:1254920" gene complement(3570470..3572013) /gene="rrsD" /locus_tag="STM3398" /db_xref="GeneID:1254921" rRNA complement(3570470..3572013) /gene="rrsD" /locus_tag="STM3398" /product="16S ribosomal RNA" /db_xref="GeneID:1254921" gene 3572480..3573043 /gene="yrdA" /locus_tag="STM3399" /db_xref="GeneID:1254922" regulatory 3572480..3572485 /regulatory_class="ribosome_binding_site" /gene="yrdA" /locus_tag="STM3399" /note="putative RBS for yrdA; RegulonDB:STMS1H003404" CDS 3572489..3573043 /gene="yrdA" /locus_tag="STM3399" /note="similar to E. coli putative transferase (AAC76304.1); Blastp hit to AAC76304.1 (256 aa), 87% identity in aa 73 - 256" /codon_start=1 /transl_table=11 /product="putative ferripyochelin binding protein" /protein_id="NP_462303.1" /db_xref="GeneID:1254922" /translation="MSDTLRPYKNLFPGIGQRVMIDTSSVVIGDVRLADDVGIWPLVV IRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGN RVLVGMGSIVLDGAIIEDDVMIGAGSLVPQHKRLESGYLYLGSPVKQIRPLSDAERSG LQYSANNYVKWKDDYLSQDNHIQP" misc_feature 3572498..3573022 /gene="yrdA" /locus_tag="STM3399" /note="Carbonic anhydrase or acetyltransferase, isoleucine patch superfamily [General function prediction only]; Region: PaaY; COG0663" /db_xref="CDD:440427" gene complement(3573019..3573290) /gene="yrdB" /locus_tag="STM3400" /db_xref="GeneID:1254923" CDS complement(3573019..3573276) /gene="yrdB" /locus_tag="STM3400" /note="similar to E. coli orf, hypothetical protein (AAC76305.1); Blastp hit to AAC76305.1 (85 aa), 71% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462304.1" /db_xref="GeneID:1254923" /translation="MNQAIQFPDREEWDTAASAIIFPALVNGMQLTCAIKKDVLAYRF GGETAEQWLAIFREYRWDLEEEAEALILAQQEDDHGWIWLS" misc_feature complement(3573025..3573264) /gene="yrdB" /locus_tag="STM3400" /note="Protein of unknown function (DUF1488); Region: DUF1488; pfam07369" /db_xref="CDD:429431" gene complement(3573273..3574104) /gene="aroE" /locus_tag="STM3401" /db_xref="GeneID:1254924" CDS complement(3573273..3574091) /gene="aroE" /locus_tag="STM3401" /EC_number="1.1.1.25" /note="similar to E. coli dehydroshikimate reductase (AAC76306.1); Blastp hit to AAC76306.1 (272 aa), 85% identity in aa 1 - 272" /codon_start=1 /transl_table=11 /product="dehydroshikimate reductase" /protein_id="NP_462305.1" /db_xref="GeneID:1254924" /translation="METYAVFGNPIAHSKSPFIHQQFAQQLDIVHPYGRVLAPINNFI NTLDAFFAAGGKGANITVPFKEEAFARSDELTERASLAGAVNTLKRLEDGRLLGDNTD GIGLLGDLERLNFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTASRAEALAK IFAHTGSVHATDMDKLDGCEFDLIINATSSGIRGEIPAIPASLIHPSLCCYDMFYQKG NTPFLSWCVQQGAKRYADGLGMLVGQAAHAVLLWHGVLPQVEPVIEQLQQELLA" misc_feature complement(3573282..3574091) /gene="aroE" /locus_tag="STM3401" /note="shikimate 5-dehydrogenase; Reviewed; Region: aroE; PRK00258" /db_xref="CDD:234703" regulatory complement(3573285..3573290) /regulatory_class="ribosome_binding_site" /gene="yrdB" /locus_tag="STM3400" /note="putative RBS for yrdB; RegulonDB:STMS1H003405" gene complement(3574096..3574681) /gene="yrdC" /locus_tag="STM3402" /db_xref="GeneID:1254925" CDS complement(3574096..3574668) /gene="yrdC" /locus_tag="STM3402" /note="similar to E. coli orf, hypothetical protein (AAC76307.1); Blastp hit to AAC76307.1 (190 aa), 84% identity in aa 1 - 190" /codon_start=1 /transl_table=11 /product="putative translation factor" /protein_id="NP_462306.1" /db_xref="GeneID:1254925" /translation="MNNNLPIGSIAAAVDLLNKENVIAYPTEAVFGVGCDPDSETAVT RLLALKQRPVDKGLILIAASFEQLKPYIDDSILTAAQRKAVFDCWPGPVTFVFPAPAT TPRWLTGRFDSLAVRVTNHPLVVALCNAYGKPLVSTSANLSGLPPCRTVEEVRAQFGD DFPVVEGATGGRLNPSEIRDALTGELFRQG" misc_feature complement(3574099..3574668) /gene="yrdC" /locus_tag="STM3402" /note="L-threonylcarbamoyladenylate synthase type 1 TsaC; Region: PRK10634" /db_xref="CDD:182603" regulatory complement(3574099..3574104) /regulatory_class="ribosome_binding_site" /gene="yrdC" /locus_tag="STM3402" /note="putative RBS for aroE; RegulonDB:STMS1H003406" gene complement(3574673..3575215) /gene="yrdD" /locus_tag="STM3403" /db_xref="GeneID:1254926" CDS complement(3574673..3575215) /gene="yrdD" /locus_tag="STM3403" /note="similar to E. coli putative DNA topoisomerase (AAC76308.1); Blastp hit to AAC76308.1 (169 aa), 33% identity in aa 3 - 157" /codon_start=1 /transl_table=11 /product="putative DNA topoisomerase" /protein_id="NP_462307.1" /db_xref="GeneID:1254926" /translation="MAKSALFSVRKNEPCPQCGAELVIRSGKHGPFLGCSRYPECDYV RPLKSQADGHIVKILEGQLCPECGAVLVLRQGRFGMFIGCSQYPQCEHTVVIDKPDET AIACPACQQGHLVQRRSRYGKIFHSCDRYPECQFVINFTPVAGECPECHYPLLIEKKT AQGVKRFCASKQCGKPVPVE" misc_feature complement(3574955..>3575182) /gene="yrdD" /locus_tag="STM3403" /note="DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair]; Region: YrdD; COG0551" /db_xref="CDD:440317" misc_feature complement(3574691..>3575056) /gene="yrdD" /locus_tag="STM3403" /note="DNA topoisomerase I, ssDNA-binding Zn-finger and Zn-ribbon domains [Replication, recombination and repair]; Region: YrdD; COG0551" /db_xref="CDD:440317" regulatory complement(3574676..3574681) /regulatory_class="ribosome_binding_site" /gene="yrdD" /locus_tag="STM3403" /note="putative RBS for yrdC; RegulonDB:STMS1H003407" gene complement(3575242..3575729) /gene="smg" /locus_tag="STM3404" /db_xref="GeneID:1254927" CDS complement(3575242..3575715) /gene="smg" /locus_tag="STM3404" /note="similar to E. coli orf, hypothetical protein (AAC76309.1); Blastp hit to AAC76309.1 (157 aa), 94% identity in aa 1 - 157" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462308.1" /db_xref="GeneID:1254927" /translation="MFDVLMYLFETYIHNEAELRVDQDRLERDLTDAGFDREDIYNAL LWLEKLADYQDGLAEPMQLASDPLSMRIYTVEECERLDASCRGFLLFLEQIQVLNLET REMVIERVLALDTAEFDLEDLKWVILMVLFNIPGCENAYQQMEELLFEVNEGMLH" misc_feature complement(3575245..3575715) /gene="smg" /locus_tag="STM3404" /note="hypothetical protein; Validated; Region: PRK03430" /db_xref="CDD:235125" gene complement(3575687..3576826) /gene="smf" /locus_tag="STM3405" /db_xref="GeneID:1254928" CDS complement(3575687..3576811) /gene="smf" /locus_tag="STM3405" /note="similar to E. coli orf, fragment 1 (AAC76311.1); Blastp hit to AAC76311.1 (253 aa), 66% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="putative protein involved in DNA uptake" /protein_id="NP_462309.1" /db_xref="GeneID:1254928" /translation="MARTEIWLRLMYVGDLYGEAMLNMANSLIRQPQINRTHLQEAGL TARQAERFLQLPAGVLDETLRWLELPQHHFLCADSEIYPPQLRAIDDYPGAIFIDGDP ACLHTCQLAVVGSRSHSWYGERWGRLLCESLAKSGLTITSGLARGIDGVAHNAAVSMG GKSVAVLGNGLAKIYPRRHAMLAENLIATGGAVVSEFPLSTPPLPQHFPRRNRIISGL SKGVLVIEAALRSGSLVTARCALEQGRDVFALPGPIGSPGSEGTHWLIKQGATLVTTP EDILENLQYGLHWLPTTAENSLYSLNQDEAALPFPELLANVGDEVTPVDVVAERAGQP VPAVVAQLLELELAGWIAAVPGGYVRLRRASHVRRTNVFV" misc_feature complement(3575690..3576811) /gene="smf" /locus_tag="STM3405" /note="DNA-protecting protein DprA; Region: PRK10736" /db_xref="CDD:236747" regulatory complement(3575724..3575729) /regulatory_class="ribosome_binding_site" /gene="smg" /locus_tag="STM3404" /note="putative RBS for smg; RegulonDB:STMS1H003408" regulatory complement(3576821..3576826) /regulatory_class="ribosome_binding_site" /gene="smf" /locus_tag="STM3405" /note="putative RBS for smf; RegulonDB:STMS1H003409" gene 3576933..3577452 /gene="def" /locus_tag="STM3406" /db_xref="GeneID:1254929" regulatory 3576933..3576938 /regulatory_class="ribosome_binding_site" /gene="def" /locus_tag="STM3406" /note="putative RBS for def; RegulonDB:STMS1H003410" CDS 3576943..3577452 /gene="def" /locus_tag="STM3406" /EC_number="3.5.1.31" /note="similar to E. coli peptide deformylase (AAC76312.1); Blastp hit to AAC76312.1 (169 aa), 98% identity in aa 1 - 169" /codon_start=1 /transl_table=11 /product="peptide deformylase" /protein_id="NP_462310.1" /db_xref="GeneID:1254929" /translation="MSVLQVLHIPDERLRKVAKPVEEVNAEIQRIVDDMFETMYAEEG IGLAATQVDIHQRIIVIDVSENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVP RAEKVKIRALDRDGNPFELEADGLLAICIQHEMDHLVGKLFIDYLSPLKQQRIRQKVE KLDRLNARA" misc_feature 3576943..3577431 /gene="def" /locus_tag="STM3406" /note="peptide deformylase; Reviewed; Region: def; PRK00150" /db_xref="CDD:234668" misc_feature order(3577072..3577080,3577093..3577095,3577210..3577218, 3577339..3577344,3577351..3577353) /gene="def" /locus_tag="STM3406" /note="active site" /db_xref="CDD:238271" misc_feature order(3577078..3577080,3577093..3577095,3577216..3577218, 3577342..3577344) /gene="def" /locus_tag="STM3406" /note="catalytic residues [active]" /db_xref="CDD:238271" misc_feature order(3577213..3577215,3577339..3577341,3577351..3577353) /gene="def" /locus_tag="STM3406" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238271" gene 3577452..3578415 /gene="fmt" /locus_tag="STM3407" /db_xref="GeneID:1254930" regulatory 3577452..3577457 /regulatory_class="ribosome_binding_site" /gene="fmt" /locus_tag="STM3407" /note="putative RBS for fmt; RegulonDB:STMS1H003411" CDS 3577468..3578415 /gene="fmt" /locus_tag="STM3407" /EC_number="2.1.2.9" /note="similar to E. coli 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase (AAC76313.1); Blastp hit to AAC76313.1 (315 aa), 91% identity in aa 1 - 314" /codon_start=1 /transl_table=11 /product="10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase" /protein_id="NP_462311.1" /db_xref="GeneID:1254930" /translation="MSDSLRIIFAGTPDFAARHLDALLTSGHNVVGVFTQPDRPAGRG KKLMPSPVKVLAEEKGLPVFQPVSLRPQENQHLVADLHADVMVVVAYGLILPKAVLDM PRLGCINVHGSLLPRWRGAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLACPIT AEDTSGSLYNKLAELGPQGLITTLKQLADGTATPEAQNEALVTHAEKLSKEEARIDWS LSAAQLERCIRAFNPWPMSWLEIDGQPVKVWQASVIEDATQSLPGTILAATKQGIQVA TGKGILNLLSLQPAGKKAMSAQDLLNSRREWFIPGNRLA" misc_feature 3577480..3578409 /gene="fmt" /locus_tag="STM3407" /note="Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]; Region: Fmt; COG0223" /db_xref="CDD:439993" gene 3578467..3579756 /gene="sun" /locus_tag="STM3408" /db_xref="GeneID:1254931" CDS 3578467..3579756 /gene="sun" /locus_tag="STM3408" /note="similar to E. coli orf, hypothetical protein (AAC76314.1); Blastp hit to AAC76314.1 (429 aa), 88% identity in aa 1 - 429" /codon_start=1 /transl_table=11 /product="putative rRNA methylase" /protein_id="NP_462312.1" /db_xref="GeneID:1254931" /translation="MKKQNNLRSLAAQAVEQVVEQGQSLSNVLPPLQQKVADKDKALL QELCFGVLRTLSQLEWLINKLMSRPMTGKQRTVHYLIMVGFYQLLYTRVPPHAALAET VEGAVSIKRPQLKGLINGVLRQFQRQQETLLNEFATSDARFLHPGWLVKRLQNAYPTQ WQHIIEANNQRPPMWLRVNRTHHTRDGWLGLLEDAGMKGYPHPDYPDAVRLETPAPVH ALPGFAEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVAPEADVLAV DIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDAPCSATGVIRRH PDIKWLRRDRDIAELAQLQAEILDAVWPRLKPGGTLVYATCSVLPEENRDQIKTFLQR TPDAALSETGTPDQPGQQNLPGGEEGDGFFYAKLIKK" misc_feature 3578482..3579750 /gene="sun" /locus_tag="STM3408" /note="16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB; Region: PRK10901" /db_xref="CDD:236790" gene 3579758..3581154 /gene="trkA" /locus_tag="STM3409" /db_xref="GeneID:1254932" regulatory 3579758..3579763 /regulatory_class="ribosome_binding_site" /gene="trkA" /locus_tag="STM3409" /note="putative RBS for trkA; RegulonDB:STMS1H003412" CDS 3579778..3581154 /gene="trkA" /locus_tag="STM3409" /note="TRK system potassium uptake protein TRKA. (SW:TRKA_SALTY)" /codon_start=1 /transl_table=11 /product="Trk system transport of potassium protein" /protein_id="NP_462313.1" /db_xref="GeneID:1254932" /translation="MKIIILGAGQVGGTLAENLVGENNDITVVDTNGERLRSLQDKFD LRVVQGHGSHPRVLREAGADDADMLVAVTSSDETNMVACQVAYSLFNTPNRIARIRSP DYVRDADKLFHSEAVPIDHLIAPEQLVIDNIYRLIEYPGALQVVNFAEGKVSLAVVKA YYGGPLIGNALSTMREHMPHIDTRVAAIFRHDRPIRPQGSTIVEAGDEVFFIAASQHI RAVMSELQRLEKPYKRIMLVGGGNIGAGLARRLEKDYSVKLIERDQQRAAELAEKLQN TIVFFGDASDQELLAEEHIDQVDLFIAVTNDDEANIMSAMLAKRMGAKKVMVLIQRRA YVDLVQGSVIDIAISPQQATISALLSHVRKADIVGVSSLRRGVAEAIEAVAHGDESTS RVVGRVIDEIKLPPGTIIGAVVRGNDVMIANDNLRIEQGDHVIMFLTDKKFITDVERL FQPSPFFL" misc_feature 3579778..3581145 /gene="trkA" /locus_tag="STM3409" /note="Trk system potassium transporter TrkA; Region: trkA; PRK09496" /db_xref="CDD:236541" gene 3581282..3581709 /gene="mscL" /locus_tag="STM3410" /db_xref="GeneID:1254933" regulatory 3581282..3581287 /regulatory_class="ribosome_binding_site" /gene="mscL" /locus_tag="STM3410" /note="putative RBS for mscL; RegulonDB:STMS1H003413" CDS 3581296..3581709 /gene="mscL" /locus_tag="STM3410" /note="similar to E. coli mechanosensitive channel (AAC76316.1); Blastp hit to AAC76316.1 (136 aa), 92% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="mechanosensitive channel" /protein_id="NP_462314.1" /db_xref="GeneID:1254933" /translation="MSFIKEFREFAMRGNVVDLAVGVIIGAAFGKIVSSLVADIIMPP LGLLIGGIDFKQFAFTLREAQGDIPAVVMHYGVFIQNVFDFVIVAFAIFVAIKLINRL NRKKAEEPAAPPAPSKEEVLLGEIRDLLKEQNNRS" misc_feature 3581302..3581706 /gene="mscL" /locus_tag="STM3410" /note="large-conductance mechanosensitive channel protein MscL; Region: mscL; PRK00567" /db_xref="CDD:234795" gene complement(3581645..3581914) /locus_tag="STM3411" /db_xref="GeneID:1254934" CDS complement(3581645..3581914) /locus_tag="STM3411" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462315.1" /db_xref="GeneID:1254934" /translation="MSRYQHKKGQIKDNAIEALLHDPLFRQRVEKNKKGKGSYLRKGK HGNRGNWEASGKKVNHFFTTGLLLIKNGYFVLSADRGFRPITLPL" misc_feature complement(3581711..3581914) /locus_tag="STM3411" /note="Stalled ribosome alternative rescue factor ArfA [Translation, ribosomal structure and biogenesis]; Region: ArfA; COG3036" /db_xref="CDD:442270" gene complement(3581972..3582408) /gene="zntR" /locus_tag="STM3412" /db_xref="GeneID:1254935" CDS complement(3581972..3582397) /gene="zntR" /locus_tag="STM3412" /note="MerR family; similar to E. coli putative transcriptional regulator (AAC76317.1); Blastp hit to AAC76317.1 (141 aa), 92% identity in aa 1 - 141" /codon_start=1 /transl_table=11 /product="Zn(II)-responsive transcriptional regulator" /protein_id="NP_462316.1" /db_xref="GeneID:1254935" /translation="MYRIGELAKLADVTPDTIRYYEKQQMMDHEVRTEGGFRLYTEND LQRLKFIRYARQLGFTLDSIRELLSIRIDPEHHTCQESKSIVQERLQEVEARIAELQT MQRSLQRLNDACCGTAHSSVYCSILEALEQGASGAKSGC" misc_feature complement(3581978..3582397) /gene="zntR" /locus_tag="STM3412" /note="Zn(2+)-responsive transcriptional regulator; Region: zntR; PRK09514" /db_xref="CDD:181924" regulatory complement(3582403..3582408) /regulatory_class="ribosome_binding_site" /gene="zntR" /locus_tag="STM3412" /note="putative RBS for zntR; RegulonDB:STMS1H003414" gene complement(3582408..3582788) /gene="yhdN" /locus_tag="STM3413" /db_xref="GeneID:1254936" CDS complement(3582408..3582776) /gene="yhdN" /locus_tag="STM3413" /note="similar to E. coli orf, hypothetical protein (AAC76318.1); Blastp hit to AAC76318.1 (122 aa), 86% identity in aa 1 - 122" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462317.1" /db_xref="GeneID:1254936" /translation="MWLLDQWAERHIIEAQRKGEFDNLPGRGEPLILDDDSHVPAELR AGYRLLKNAGCLPPELEQRRDAIQLLDILNSIREDDPRYHQVSRQLSLLELKLRQAGL STDFLHGEYAEKLLHKINDN" misc_feature complement(3582411..3582776) /gene="yhdN" /locus_tag="STM3413" /note="hypothetical protein; Provisional; Region: PRK10203" /db_xref="CDD:182303" regulatory complement(3582783..3582788) /regulatory_class="ribosome_binding_site" /gene="yhdN" /locus_tag="STM3413" /note="putative RBS for yhdN; RegulonDB:STMS1H003415" gene complement(3582884..3583279) /gene="rplQ" /locus_tag="STM3414" /db_xref="GeneID:1254937" CDS complement(3582884..3583267) /gene="rplQ" /locus_tag="STM3414" /note="similar to E. coli 50S ribosomal subunit protein L17 (AAC76319.1); Blastp hit to AAC76319.1 (127 aa), 99% identity in aa 1 - 127" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L17" /protein_id="NP_462318.1" /db_xref="GeneID:1254937" /translation="MRHRKSGRQLNRNSSHRQAMFRNMAGSLVRHEIIKTTLPKAKEL RRVVEPLITLAKTDSVANRRLAFARTRDNEIVAKLFNELGPRFASRAGGYTRILKCGF RAGDNAPMAYIELVDRSEKTEAAAE" misc_feature complement(3582905..3583267) /gene="rplQ" /locus_tag="STM3414" /note="Ribosomal protein L17 [Translation, ribosomal structure and biogenesis]; Region: RplQ; COG0203" /db_xref="CDD:439973" regulatory complement(3583274..3583279) /regulatory_class="ribosome_binding_site" /gene="rplQ" /locus_tag="STM3414" /note="putative RBS for rplQ; RegulonDB:STMS1H003416" gene complement(3583308..3584306) /gene="rpoA" /locus_tag="STM3415" /db_xref="GeneID:1254938" CDS complement(3583308..3584297) /gene="rpoA" /locus_tag="STM3415" /EC_number="2.7.7.6" /note="DNA-directed RNA polymerase alpha chain. (SW:RPOA_ECOLI)" /codon_start=1 /transl_table=11 /product="RNA polymerase, alpha subunit" /protein_id="NP_462319.1" /db_xref="GeneID:1254938" /translation="MQGSVTEFLKPRLVDIEQVSSTHAKVTLEPLERGFGHTLGNALR RILLSSMPGCAVTEVEIDGVLHEYSTKEGVQEDILEILLNLKGLAVRVQGKDEVILTL NKSGIGPVTAADITHDGDVEIVKPQHVICHLTDENASISMRIKVQRGRGYVPASTRIH SEEDERPIGRLLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIR RAATILAEQLEAFVDLRDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIH YIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASRGLSLGMRLENWPPASIADE" misc_feature complement(3583332..3584282) /gene="rpoA" /locus_tag="STM3415" /note="DNA-directed RNA polymerase, alpha subunit/40 kD subunit [Transcription]; Region: RpoA; COG0202" /db_xref="CDD:439972" regulatory complement(3584301..3584306) /regulatory_class="ribosome_binding_site" /gene="rpoA" /locus_tag="STM3415" /note="putative RBS for rpoA; RegulonDB:STMS1H003417" gene complement(3584323..3584956) /gene="rpsD" /locus_tag="STM3416" /db_xref="GeneID:1254939" CDS complement(3584323..3584943) /gene="rpsD" /locus_tag="STM3416" /note="30S ribosomal protein S4. (SW:RS4_SALTY)" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S4" /protein_id="NP_462320.1" /db_xref="GeneID:1254939" /translation="MARYLGPKLKLSRREGTDLFLKSGVRAIDTKCKIEQAPGQHGAR KPRLSDYGVQLREKQKVRRIYGVLERQFRNYYKEAARLKGNTGENLLALLEGRLDNVV YRMGFGATRAEARQLVSHKAIMVNGRVVNIASYQVSPNDVVSIREKAKKQSRVKAALE LAEQREKPTWLEVDAGKMEGTYKRKPERSDLSADINEHLIVELYSK" misc_feature complement(3584326..3584943) /gene="rpsD" /locus_tag="STM3416" /note="Ribosomal protein S4 or related protein [Translation, ribosomal structure and biogenesis]; Region: RpsD; COG0522" /db_xref="CDD:440288" regulatory complement(3584951..3584956) /regulatory_class="ribosome_binding_site" /gene="rpsD" /locus_tag="STM3416" /note="putative RBS for rpsD; RegulonDB:STMS1H003418" gene complement(3584977..3585382) /gene="rpsK" /locus_tag="STM3417" /db_xref="GeneID:1254940" CDS complement(3584977..3585366) /gene="rpsK" /locus_tag="STM3417" /note="similar to E. coli 30S ribosomal subunit protein S11 (AAC76322.1); Blastp hit to AAC76322.1 (129 aa), 99% identity in aa 1 - 129" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S11" /protein_id="NP_462321.1" /db_xref="GeneID:1254940" /translation="MAKAPVRARKRVRKQVSDGVAHIHASFNNTIVTITDRQGNALGW ATAGGSGFRGSRKSTPFAAQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNA AGFRITNITDVTPIPHNGCRPPKKRRV" misc_feature complement(3584980..3585363) /gene="rpsK" /locus_tag="STM3417" /note="30S ribosomal protein S11; Validated; Region: PRK05309" /db_xref="CDD:180007" regulatory complement(3585377..3585382) /regulatory_class="ribosome_binding_site" /gene="rpsK" /locus_tag="STM3417" /note="putative RBS for rpsK; RegulonDB:STMS1H003419" gene complement(3585383..3585751) /gene="rpsM" /locus_tag="STM3418" /db_xref="GeneID:1254941" CDS complement(3585383..3585739) /gene="rpsM" /locus_tag="STM3418" /note="similar to E. coli 30S ribosomal subunit protein S13 (AAC76323.1); Blastp hit to AAC76323.1 (118 aa), 96% identity in aa 1 - 118" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S13" /protein_id="NP_462322.1" /db_xref="GeneID:1254941" /translation="MARIAGINIPDQKHAVIALTSIYGVGKTRSKAILAAAGIAENVK ISELSEEQIDTLRDEVAKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRT KTNARTRKGPRKPIKK" misc_feature complement(3585386..3585739) /gene="rpsM" /locus_tag="STM3418" /note="30S ribosomal protein S13; Validated; Region: rpsM; PRK05179" /db_xref="CDD:235358" regulatory complement(3585746..3585751) /regulatory_class="ribosome_binding_site" /gene="rpsM" /locus_tag="STM3418" /note="putative RBS for rpsM; RegulonDB:STMS1H003420" gene complement(3585886..3586015) /gene="rpmJ" /locus_tag="STM3419" /db_xref="GeneID:1254942" CDS complement(3585886..3586002) /gene="rpmJ" /locus_tag="STM3419" /note="similar to E. coli 50S ribosomal subunit protein L36 (AAC76324.1); Blastp hit to AAC76324.1 (38 aa), 100% identity in aa 1 - 38" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein X" /protein_id="NP_462323.1" /db_xref="GeneID:1254942" /translation="MKVRASVKKLCRNCKIVKRDGVIRVICSAEPKHKQRQG" misc_feature complement(3585889..3586002) /gene="rpmJ" /locus_tag="STM3419" /note="Ribosomal protein L36 [Translation, ribosomal structure and biogenesis]; Region: RpmJ; COG0257" /db_xref="CDD:440027" regulatory complement(3586010..3586015) /regulatory_class="ribosome_binding_site" /gene="rpmJ" /locus_tag="STM3419" /note="putative RBS for rpmJ; RegulonDB:STMS1H003421" gene complement(3586034..3587381) /gene="secY" /locus_tag="STM3420" /db_xref="GeneID:1254943" CDS complement(3586034..3587365) /gene="secY" /locus_tag="STM3420" /note="membrane subunit; putative ATPase; similar to E. coli putative ATPase subunit of translocase (AAC76325.1); Blastp hit to AAC76325.1 (443 aa), 99% identity in aa 1 - 443" /codon_start=1 /transl_table=11 /product="preprotein translocase of IISP family" /protein_id="NP_462324.1" /db_xref="GeneID:1254943" /translation="MAKQPGLDFQSAKGGLGELKRRLLFVIGALIVFRIGSFIPIPGI DAAVLAKLLEQQRGTIIEMFNMFSGGALSRASIFALGIMPYISASIIIQLLTVVHPTL AEIKKEGESGRRKISQYTRYGTLVLAIFQSIGIATGLPNMPGMQGLVMNPGFAFYFTA VVSLVTGTMFLMWLGEQITERGIGNGISIIIFAGIVAGLPPAIAHTIEQARQGDLHFL VLLLVAVLVFAVTFFVVFVERGQRRIVVNYAKRQQGRRVYAAQSTHLPLKVNMAGVIP AIFASSIILFPATIASWFGGGTGWNWLTTISLYLQPGQPLYVLLYASAIIFFCFFYTA LVFNPRETADNLKKSGAFVPGIRPGEQTAKYIDKVMTRLTLVGALYITFICLIPEFMR DAMKVPFYFGGTSLLIVVVVIMDFMAQVQTLMMSSQYESALKKANLKGYGR" misc_feature complement(3586064..3587314) /gene="secY" /locus_tag="STM3420" /note="Preprotein translocase subunit SecY [Intracellular trafficking, secretion, and vesicular transport]; Region: SecY; COG0201" /db_xref="CDD:439971" gene complement(3587373..3587819) /gene="rplO" /locus_tag="STM3421" /db_xref="GeneID:1254944" CDS complement(3587373..3587807) /gene="rplO" /locus_tag="STM3421" /note="similar to E. coli 50S ribosomal subunit protein L15 (AAC76326.1); Blastp hit to AAC76326.1 (144 aa), 99% identity in aa 1 - 144" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L15" /protein_id="NP_462325.1" /db_xref="GeneID:1254944" /translation="MRLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGG GVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEVRLSDLAKVEGGVVDLNTLKAANIIG IQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE" misc_feature complement(3587376..3587807) /gene="rplO" /locus_tag="STM3421" /note="Ribosomal protein L15 [Translation, ribosomal structure and biogenesis]; Region: RplO; COG0200" /db_xref="CDD:439970" regulatory complement(3587376..3587381) /regulatory_class="ribosome_binding_site" /gene="rplO" /locus_tag="STM3421" /note="putative RBS for secY; RegulonDB:STMS1H003422" gene complement(3587811..3588005) /gene="rpmD" /locus_tag="STM3422" /db_xref="GeneID:1254945" CDS complement(3587811..3587990) /gene="rpmD" /locus_tag="STM3422" /note="similar to E. coli 50S ribosomal subunit protein L30 (AAC76327.1); Blastp hit to AAC76327.1 (59 aa), 96% identity in aa 1 - 59" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L30" /protein_id="NP_462326.1" /db_xref="GeneID:1254945" /translation="MAKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAV RGMVNAVSFMVKVEE" misc_feature complement(3587814..3587987) /gene="rpmD" /locus_tag="STM3422" /note="50S ribosomal protein L30; Reviewed; Region: rpmD; PRK05611" /db_xref="CDD:180163" misc_feature complement(order(3587850..3587855,3587859..3587867, 3587874..3587879,3587892..3587894,3587901..3587903, 3587907..3587915,3587922..3587927,3587934..3587942, 3587946..3587951,3587955..3587960)) /gene="rpmD" /locus_tag="STM3422" /note="23S rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:100100" regulatory complement(3587814..3587819) /regulatory_class="ribosome_binding_site" /gene="rpmD" /locus_tag="STM3422" /note="putative RBS for rplO; RegulonDB:STMS1H003423" gene complement(3587994..3588507) /gene="rpsE" /locus_tag="STM3423" /db_xref="GeneID:1254946" CDS complement(3587994..3588497) /gene="rpsE" /locus_tag="STM3423" /note="30S ribosomal protein S5. (SW:RS5_SALTY)" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S5" /protein_id="NP_462327.1" /db_xref="GeneID:1254946" /translation="MAHIEKQAGELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNG RVGFGYGKAREVPAAIQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEG TGIIAGGAMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGKS VEEILGK" misc_feature complement(3588000..3588497) /gene="rpsE" /locus_tag="STM3423" /note="30S ribosomal protein S5; Validated; Region: rpsE; PRK00550" /db_xref="CDD:234790" regulatory complement(3588000..3588005) /regulatory_class="ribosome_binding_site" /gene="rpmD" /locus_tag="STM3422" /note="putative RBS for rpmD; RegulonDB:STMS1H003424" regulatory complement(3588502..3588507) /regulatory_class="ribosome_binding_site" /gene="rpsE" /locus_tag="STM3423" /note="putative RBS for rpsE; RegulonDB:STMS1H003425" gene complement(3588512..3588876) /gene="rplR" /locus_tag="STM3424" /db_xref="GeneID:1254947" CDS complement(3588512..3588865) /gene="rplR" /locus_tag="STM3424" /note="similar to E. coli 50S ribosomal subunit protein L18 (AAC76329.1); Blastp hit to AAC76329.1 (117 aa), 99% identity in aa 1 - 117" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L18" /protein_id="NP_462328.1" /db_xref="GeneID:1254947" /translation="MDKKSARIRRATRARRKLKELGATRLVVHRTPRHIYAQVIAPNG SEVLVAASTVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGR VQALADAAREAGLQF" misc_feature complement(3588515..3588811) /gene="rplR" /locus_tag="STM3424" /note="Ribosomal protein L18 [Translation, ribosomal structure and biogenesis]; Region: RplR; COG0256" /db_xref="CDD:440026" regulatory complement(3588871..3588876) /regulatory_class="ribosome_binding_site" /gene="rplR" /locus_tag="STM3424" /note="putative RBS for rplR; RegulonDB:STMS1H003426" gene complement(3588875..3589417) /gene="rplF" /locus_tag="STM3425" /db_xref="GeneID:1254948" CDS complement(3588875..3589408) /gene="rplF" /locus_tag="STM3425" /note="similar to E. coli 50S ribosomal subunit protein L6 (AAC76330.1); Blastp hit to AAC76330.1 (177 aa), 98% identity in aa 1 - 177" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L6" /protein_id="NP_462329.1" /db_xref="GeneID:1254948" /translation="MSRVAKAPVVVPAGVDVKINGQVITIKGKNGELTRTLNDAVEVK HADNALTFGPRDGYADGWAQAGTARALLNSMVIGVTEGFTKKLQLVGVGYRAAVKGNV VNLSLGFSHPVDHQLPAGITAECPTQTEIVLKGADKQVIGQVAADLRAYRRPEPYKGK GVRYADEVVRTKEAKKK" misc_feature complement(3588878..3589405) /gene="rplF" /locus_tag="STM3425" /note="Ribosomal protein L6P/L9E [Translation, ribosomal structure and biogenesis]; Region: RplF; COG0097" /db_xref="CDD:439867" regulatory complement(3589412..3589417) /regulatory_class="ribosome_binding_site" /gene="rplF" /locus_tag="STM3425" /note="putative RBS for rplF; RegulonDB:STMS1H003427" gene complement(3589421..3589829) /gene="rpsH" /locus_tag="STM3426" /db_xref="GeneID:1254949" CDS complement(3589421..3589813) /gene="rpsH" /locus_tag="STM3426" /note="similar to E. coli 30S ribosomal subunit protein S8, and regulator (AAC76331.1); Blastp hit to AAC76331.1 (130 aa), 100% identity in aa 1 - 130" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S8, and regulator" /protein_id="NP_462330.1" /db_xref="GeneID:1254949" /translation="MSMQDPIADMLTRIRNGQAANKAAVTMPSSKLKVAIANVLKEEG FIEDFKVEGDTKPELELTLKYFQGKAVVESIQRVSRPGLRIYKRKDELPKVMAGLGIA VVSTSKGVMTDRAARQAGLGGEIICYVA" misc_feature complement(3589424..3589810) /gene="rpsH" /locus_tag="STM3426" /note="30S ribosomal protein S8; Validated; Region: rpsH; PRK00136" /db_xref="CDD:234658" regulatory complement(3589824..3589829) /regulatory_class="ribosome_binding_site" /gene="rpsH" /locus_tag="STM3426" /note="putative RBS for rpsH; RegulonDB:STMS1H003428" gene complement(3589847..3590168) /gene="rpsN" /locus_tag="STM3427" /db_xref="GeneID:1254950" CDS complement(3589847..3590152) /gene="rpsN" /locus_tag="STM3427" /note="similar to E. coli 30S ribosomal subunit protein S14 (AAC76332.1); Blastp hit to AAC76332.1 (101 aa), 98% identity in aa 1 - 101" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S14" /protein_id="NP_462331.3" /db_xref="GeneID:1254950" /translation="MAKQSMKAREVKRVALADKYFAKRAELKAIISDVNATDEDRWNA VLKLQTLPRDSSPSRQRNRCRQTGRPHAFLRKFGLSRIKVREAAMRGEIPGLKKASW" misc_feature complement(3589850..3590152) /gene="rpsN" /locus_tag="STM3427" /note="30S ribosomal protein S14; Reviewed; Region: rpsN; PRK08881" /db_xref="CDD:181574" regulatory complement(3590163..3590168) /regulatory_class="ribosome_binding_site" /gene="rpsN" /locus_tag="STM3427" /note="putative RBS for rpsN; RegulonDB:STMS1H003429" gene complement(3590167..3590719) /gene="rplE" /locus_tag="STM3428" /db_xref="GeneID:1254951" CDS complement(3590167..3590706) /gene="rplE" /locus_tag="STM3428" /note="50S ribosomal protein L5. (SW:RL5_SALTY)" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L5" /protein_id="NP_462332.1" /db_xref="GeneID:1254951" /translation="MAKLHDYYKDEVVNKLMTEFNYNSVMQVPRVEKITLNMGVGEAI ADKKLLDNAAADLTAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFER LITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRGLDITITTTA KSDEEGRALLAAFDFPFRK" misc_feature complement(3590170..3590706) /gene="rplE" /locus_tag="STM3428" /note="Ribosomal protein L5 [Translation, ribosomal structure and biogenesis]; Region: RplE; COG0094" /db_xref="CDD:439864" regulatory complement(3590714..3590719) /regulatory_class="ribosome_binding_site" /gene="rplE" /locus_tag="STM3428" /note="putative RBS for rplE; RegulonDB:STMS1H003430" gene complement(3590721..3591047) /gene="rplX" /locus_tag="STM3429" /db_xref="GeneID:1254952" CDS complement(3590721..3591035) /gene="rplX" /locus_tag="STM3429" /note="50S ribosomal protein L24. (SW:RL24_SALTY)" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L24" /protein_id="NP_462333.1" /db_xref="GeneID:1254952" /translation="MAAKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKK HQKPVPALNQPGGIVEKEAAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSET IK" misc_feature complement(3590727..3591035) /gene="rplX" /locus_tag="STM3429" /note="Ribosomal protein L24 [Translation, ribosomal structure and biogenesis]; Region: RplX; COG0198" /db_xref="CDD:439968" regulatory complement(3591042..3591047) /regulatory_class="ribosome_binding_site" /gene="rplX" /locus_tag="STM3429" /note="putative RBS for rplX; RegulonDB:STMS1H003431" gene complement(3591046..3591430) /gene="rplN" /locus_tag="STM3430" /db_xref="GeneID:1254953" CDS complement(3591046..3591417) /gene="rplN" /locus_tag="STM3430" /note="similar to E. coli 50S ribosomal subunit protein L14 (AAC76335.1); Blastp hit to AAC76335.1 (123 aa), 98% identity in aa 1 - 123" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L14" /protein_id="NP_462334.1" /db_xref="GeneID:1254953" /translation="MIQEQTMLNVADNSGARRVMCIKVLGGSHRRYAGVGDIIKITIK EAIPRGKVKKGDVLKAVVVRTKKGVRRPDGSVIRFDGNACVILNNNSEQPIGTRIFGP VTRELRNEKFMKIISLAPEVL" misc_feature complement(3591049..3591417) /gene="rplN" /locus_tag="STM3430" /note="Ribosomal protein L14 [Translation, ribosomal structure and biogenesis]; Region: RplN; COG0093" /db_xref="CDD:439863" regulatory complement(3591425..3591430) /regulatory_class="ribosome_binding_site" /gene="rplN" /locus_tag="STM3430" /note="putative RBS for rplN; RegulonDB:STMS1H003432" gene complement(3591581..3591849) /gene="rpsQ" /locus_tag="STM3431" /db_xref="GeneID:1254954" CDS complement(3591581..3591835) /gene="rpsQ" /locus_tag="STM3431" /note="similar to E. coli 30S ribosomal subunit protein S17 (AAC76336.1); Blastp hit to AAC76336.1 (84 aa), 98% identity in aa 1 - 84" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S17" /protein_id="NP_462335.1" /db_xref="GeneID:1254954" /translation="MTDKIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKM HVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKAVL" misc_feature complement(3591587..3591826) /gene="rpsQ" /locus_tag="STM3431" /note="Ribosomal protein S17 [Translation, ribosomal structure and biogenesis]; Region: RpsQ; COG0186" /db_xref="CDD:439956" gene complement(3591835..3592037) /gene="rpmC" /locus_tag="STM3432" /db_xref="GeneID:1254955" CDS complement(3591835..3592026) /gene="rpmC" /locus_tag="STM3432" /note="similar to E. coli 50S ribosomal subunit protein L29 (AAC76337.1); Blastp hit to AAC76337.1 (63 aa), 98% identity in aa 1 - 63" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L29" /protein_id="NP_462336.1" /db_xref="GeneID:1254955" /translation="MKAKELREKSVEELNTELLNLLREQFNLRMQAASGQLQQSHLLK QVRRDVARVKTLLTEKAGA" misc_feature complement(3591838..3592026) /gene="rpmC" /locus_tag="STM3432" /note="Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]; Region: RpmC; COG0255" /db_xref="CDD:440025" regulatory complement(3591844..3591849) /regulatory_class="ribosome_binding_site" /gene="rpmC" /locus_tag="STM3432" /note="putative RBS for rpsQ; RegulonDB:STMS1H003433" gene complement(3592026..3592450) /gene="rplP" /locus_tag="STM3433" /db_xref="GeneID:1254956" CDS complement(3592026..3592436) /gene="rplP" /locus_tag="STM3433" /note="similar to E. coli 50S ribosomal subunit protein L16 (AAC76338.1); Blastp hit to AAC76338.1 (136 aa), 98% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L16" /protein_id="NP_462337.1" /db_xref="GeneID:1254956" /translation="MLQPKRTKFRKMHKGRNRGLAAGADVSFGSFGLKAVGRGRLTAR QIEAARRAMTRAVKRQGKIWIRVFPDKPITEKPLAVRMGKGKGNVEYWVALIQPGKVL YEMDGVPEELAREAFKLAAAKLPIKTTFVTKTVM" misc_feature complement(3592032..3592436) /gene="rplP" /locus_tag="STM3433" /note="Ribosomal protein L16/L10AE [Translation, ribosomal structure and biogenesis]; Region: RplP; COG0197" /db_xref="CDD:439967" regulatory complement(3592032..3592037) /regulatory_class="ribosome_binding_site" /gene="rpmC" /locus_tag="STM3432" /note="putative RBS for rpmC; RegulonDB:STMS1H003434" regulatory complement(3592445..3592450) /regulatory_class="ribosome_binding_site" /gene="rplP" /locus_tag="STM3433" /note="putative RBS for rplP; RegulonDB:STMS1H003435" gene complement(3592449..3593163) /gene="rpsC" /locus_tag="STM3434" /db_xref="GeneID:1254957" CDS complement(3592449..3593150) /gene="rpsC" /locus_tag="STM3434" /note="similar to E. coli 30S ribosomal subunit protein S3 (AAC76339.1); Blastp hit to AAC76339.1 (233 aa), 100% identity in aa 1 - 233" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S3" /protein_id="NP_462338.1" /db_xref="GeneID:1254957" /translation="MGQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLT KELAKASVSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQIN IAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKVEVSGRLGGA EIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVWIFKGEILGGMAAVEQPE KPAAQPKKQQRKGRK" misc_feature complement(3592473..3593150) /gene="rpsC" /locus_tag="STM3434" /note="Ribosomal protein S3 [Translation, ribosomal structure and biogenesis]; Region: RpsC; COG0092" /db_xref="CDD:439862" regulatory complement(3593158..3593163) /regulatory_class="ribosome_binding_site" /gene="rpsC" /locus_tag="STM3434" /note="putative RBS for rpsC; RegulonDB:STMS1H003436" gene complement(3593168..3593509) /gene="rplV" /locus_tag="STM3435" /db_xref="GeneID:1254958" CDS complement(3593168..3593500) /gene="rplV" /locus_tag="STM3435" /note="similar to E. coli 50S ribosomal subunit protein L22 (AAC76340.1); Blastp hit to AAC76340.1 (110 aa), 100% identity in aa 1 - 110" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L22" /protein_id="NP_462339.1" /db_xref="GeneID:1254958" /translation="METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAA VLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKRIMPRAKGRADRILKRTSH ITVVVSDR" misc_feature complement(3593171..3593500) /gene="rplV" /locus_tag="STM3435" /note="Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]; Region: RplV; COG0091" /db_xref="CDD:439861" regulatory complement(3593504..3593509) /regulatory_class="ribosome_binding_site" /gene="rplV" /locus_tag="STM3435" /note="putative RBS for rplV; RegulonDB:STMS1H003437" gene complement(3593515..3593804) /gene="rpsS" /locus_tag="STM3436" /db_xref="GeneID:1254959" CDS complement(3593515..3593793) /gene="rpsS" /locus_tag="STM3436" /note="similar to E. coli 30S ribosomal subunit protein S19 (AAC76341.1); Blastp hit to AAC76341.1 (92 aa), 98% identity in aa 1 - 92" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S19" /protein_id="NP_462340.1" /db_xref="GeneID:1254959" /translation="MPRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNM IGLTIAVHNGRQHVPVFVSDEMVGHKLGEFAPTRTYRGHAADKKAKKK" misc_feature complement(3593545..3593793) /gene="rpsS" /locus_tag="STM3436" /note="30S ribosomal protein S19; Reviewed; Region: rpsS; PRK00357" /db_xref="CDD:178985" regulatory complement(3593799..3593804) /regulatory_class="ribosome_binding_site" /gene="rpsS" /locus_tag="STM3436" /note="putative RBS for rpsS; RegulonDB:STMS1H003438" gene complement(3593810..3594644) /gene="rplB" /locus_tag="STM3437" /db_xref="GeneID:1254960" CDS complement(3593810..3594631) /gene="rplB" /locus_tag="STM3437" /note="similar to E. coli 50S ribosomal subunit protein L2 (AAC76342.1); Blastp hit to AAC76342.1 (273 aa), 99% identity in aa 1 - 273" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L2" /protein_id="NP_462341.1" /db_xref="GeneID:1254960" /translation="MAVVKCKPTSPGRRHVVKVVNPELHKGKPFAPLVEKNSKSGGRN NNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERR YILAPKGLKAGDQIQSGVDAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGT YVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRP TVRGTAMNPVDHPHGGGEGRNFGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSK" misc_feature complement(3593813..3594631) /gene="rplB" /locus_tag="STM3437" /note="Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]; Region: RplB; COG0090" /db_xref="CDD:439860" regulatory complement(3594639..3594644) /regulatory_class="ribosome_binding_site" /gene="rplB" /locus_tag="STM3437" /note="putative RBS for rplB; RegulonDB:STMS1H003439" gene complement(3594649..3594965) /gene="rplW" /locus_tag="STM3438" /db_xref="GeneID:1254961" CDS complement(3594649..3594951) /gene="rplW" /locus_tag="STM3438" /note="similar to E. coli 50S ribosomal subunit protein L23 (AAC76343.1); Blastp hit to AAC76343.1 (100 aa), 99% identity in aa 1 - 100" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L23" /protein_id="NP_462342.1" /db_xref="GeneID:1254961" /translation="MIREERLLKVLRAPHVSEKASTAMEKTNTIVLKVAKDATKAEIK AAVQKLFEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE" misc_feature complement(3594655..3594930) /gene="rplW" /locus_tag="STM3438" /note="50S ribosomal protein L23; Reviewed; Region: rplW; PRK05738" /db_xref="CDD:235586" gene complement(3594948..3595565) /gene="rplD" /locus_tag="STM3439" /db_xref="GeneID:1254962" CDS complement(3594948..3595553) /gene="rplD" /locus_tag="STM3439" /note="regulates expression of S10 operon; similar to E. coli 50S ribosomal subunit protein L4, regulates expression of S10 operon (AAC76344.1); Blastp hit to AAC76344.1 (201 aa), 100% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L4" /protein_id="NP_462343.1" /db_xref="GeneID:1254962" /translation="MELVLKDAQSALTVSETTFGRDFNEALVHQVVVAYAAGARQGTR AQKTRAEVTGSGKKPWRQKGTGRARSGSIKSPIWRSGGVTFAARPQDHSQKVNKKMYR GALKSILSELVRQDRLIVVEKFSVEAPKTKLLAQKLKDMALEDVLIITGELDENLFLA ARNLHKVDVRDATGIDPVSLIAFDKVVMTADAVKQVEEMLA" misc_feature complement(3594951..3595553) /gene="rplD" /locus_tag="STM3439" /note="Ribosomal protein L4 [Translation, ribosomal structure and biogenesis]; Region: RplD; COG0088" /db_xref="CDD:439858" regulatory complement(3594960..3594965) /regulatory_class="ribosome_binding_site" /gene="rplW" /locus_tag="STM3438" /note="putative RBS for rplW; RegulonDB:STMS1H003440" regulatory complement(3595560..3595565) /regulatory_class="ribosome_binding_site" /gene="rplD" /locus_tag="STM3439" /note="putative RBS for rplD; RegulonDB:STMS1H003441" gene complement(3595564..3596205) /gene="rplC" /locus_tag="STM3440" /db_xref="GeneID:1254963" CDS complement(3595564..3596193) /gene="rplC" /locus_tag="STM3440" /note="similar to E. coli 50S ribosomal subunit protein L3 (AAC76345.1); Blastp hit to AAC76345.1 (209 aa), 98% identity in aa 1 - 209" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L3" /protein_id="NP_462344.1" /db_xref="GeneID:1254963" /translation="MIGLVGKKVGMTRIFTEDGVSIPVTVIEVEANRVTQVKDLANDG YRAVQVTTGAKKANRVTKPEAGHFAKAGVEAGRGLWEFRLAEGEEYTVGQSISVELFA DVKKVDVTGTSKGKGFAGTVKRWNFRTQDATHGNSLSHRVPGSIGQNQTPGKVFKGKK MAGQMGNERVTVQSLDVVRVDAERNLLLVKGGVPGATGCDLIVKPAVKA" misc_feature complement(3595567..3596193) /gene="rplC" /locus_tag="STM3440" /note="Ribosomal protein L3 [Translation, ribosomal structure and biogenesis]; Region: RplC; COG0087" /db_xref="CDD:439857" regulatory complement(3596200..3596205) /regulatory_class="ribosome_binding_site" /gene="rplC" /locus_tag="STM3440" /note="putative RBS for rplC; RegulonDB:STMS1H003442" gene complement(3596226..3596553) /gene="rpsJ" /locus_tag="STM3441" /db_xref="GeneID:1254964" CDS complement(3596226..3596537) /gene="rpsJ" /locus_tag="STM3441" /note="similar to E. coli 30S ribosomal subunit protein S10 (AAC76346.1); Blastp hit to AAC76346.1 (103 aa), 98% identity in aa 1 - 103" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S10" /protein_id="NP_462345.1" /db_xref="GeneID:1254964" /translation="MQNQRIRIRLKAFDHRLIDQSTAEIVETAKRTGAQVRGPIPLPT RKERFTVLISPHVNKDARDQYEIRTHKRLVDIVEPTEKTVDALMRLDLAAGVDVQISL G" misc_feature complement(3596232..3596537) /gene="rpsJ" /locus_tag="STM3441" /note="30S ribosomal protein S10; Reviewed; Region: rpsJ; PRK00596" /db_xref="CDD:179076" regulatory complement(3596548..3596553) /regulatory_class="ribosome_binding_site" /gene="rpsJ" /locus_tag="STM3441" /note="putative RBS for rpsJ; RegulonDB:STMS1H003443" gene 3596910..3597384 /gene="hopD" /locus_tag="STM3442" /db_xref="GeneID:1254965" regulatory 3596910..3596915 /regulatory_class="ribosome_binding_site" /gene="hopD" /locus_tag="STM3442" /note="putative RBS for hopD; RegulonDB:STMS1H003444" CDS 3596917..3597384 /gene="hopD" /locus_tag="STM3442" /note="similar to E. coli leader peptidase, integral membrane protein (AAC76360.1); Blastp hit to AAC76360.1 (225 aa), 47% identity in aa 80 - 215" /codon_start=1 /transl_table=11 /product="leader peptidase HopD" /protein_id="NP_462346.1" /db_xref="GeneID:1254965" /translation="MFVALPFLIFYASFSLLLGIYDARTGLLPDRFTCPLLWGGLLYH QICLPERLPDALWGAIAGYGGFALIYWGYRLRYQKEGLGYGDVKYLAALGAWHCWETL PLLVFLAAMLACGGFGVALLVRGKSALINPLPFGPWLAVAGFITGWKVFFPDG" misc_feature <3596923..3597354 /gene="hopD" /locus_tag="STM3442" /note="Prepilin signal peptidase PulO (type II secretory pathway) or related peptidase [Cell motility, Intracellular trafficking, secretion, and vesicular transport]; Region: PulO; COG1989" /db_xref="CDD:441592" gene complement(3597381..3597873) /gene="bfr" /locus_tag="STM3443" /db_xref="GeneID:1254966" CDS complement(3597381..3597857) /gene="bfr" /locus_tag="STM3443" /note="iron storage homoprotein; bacterioferritin (BFR) (cytochrome B-1) (cytochrome B-557). (SW:BFR_SALTY)" /codon_start=1 /transl_table=11 /product="bacterioferrin" /protein_id="NP_462347.1" /db_xref="GeneID:1254966" /translation="MKGDVKIINYLNKLLGNELVAINQYFLHARMFKNWGLTRLNDVE YHESIDEMKHADKYIERILFLEGIPNLQDLGKLGIGEDVEEMLRSDLRLELEGAKDLR EAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIAKLGMQNYLQSQIKVTD" misc_feature complement(3597384..3597857) /gene="bfr" /locus_tag="STM3443" /note="bacterioferritin; Provisional; Region: PRK10635" /db_xref="CDD:182604" misc_feature complement(order(3597690..3597692,3597702..3597704, 3597723..3597725,3597768..3597770,3597789..3597791, 3597813..3597815)) /gene="bfr" /locus_tag="STM3443" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:153099" misc_feature complement(order(3597477..3597482,3597555..3597557, 3597567..3597569,3597576..3597581,3597696..3597698, 3597705..3597707,3597783..3597785,3597795..3597800, 3597804..3597809)) /gene="bfr" /locus_tag="STM3443" /note="ferroxidase pore [active]" /db_xref="CDD:153099" misc_feature complement(order(3597468..3597470,3597477..3597479, 3597555..3597557,3597576..3597578,3597696..3597698, 3597705..3597707,3597783..3597785,3597804..3597806)) /gene="bfr" /locus_tag="STM3443" /note="ferroxidase diiron center [ion binding]; other site" /db_xref="CDD:153099" regulatory complement(3597868..3597873) /regulatory_class="ribosome_binding_site" /gene="bfr" /locus_tag="STM3443" /note="putative RBS for bfr; RegulonDB:STMS1H003445" gene complement(3597930..3598136) /gene="bfd" /locus_tag="STM3444" /db_xref="GeneID:1254967" CDS complement(3597930..3598124) /gene="bfd" /locus_tag="STM3444" /note="iron storage and mobilitybacterioferritin-associated ferredoxin. (SW:BFD_SALTY)" /codon_start=1 /transl_table=11 /product="regulatory or redox component complexing with Bfr" /protein_id="NP_462348.1" /db_xref="GeneID:1254967" /translation="MYVCLCNGISDKKIRQAVRQFHPQSFQQLRKFIPVGNQCGKCIR AAREVMQDELTQMPEFKEIA" misc_feature complement(3597933..3598124) /gene="bfd" /locus_tag="STM3444" /note="bacterioferritin-associated ferredoxin; Provisional; Region: PRK10509" /db_xref="CDD:182506" regulatory complement(3598131..3598136) /regulatory_class="ribosome_binding_site" /gene="bfd" /locus_tag="STM3444" /note="putative RBS for bfd; RegulonDB:STMS1H003446" gene complement(3598309..3599500) /gene="tufA" /locus_tag="STM3445" /db_xref="GeneID:1254968" CDS complement(3598309..3599493) /gene="tufA" /locus_tag="STM3445" /EC_number="3.6.5.3" /note="elongation factor TU (EF-TU); duplicate of tufB; (SW:EFTU_SALTY)" /codon_start=1 /transl_table=11 /product="protein chain elongation factor EF-Tu" /protein_id="NP_462349.1" /db_xref="GeneID:1254968" /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ YDFPGDDTPIVRGSALKALEGDAEWEAKIIELAGFLDSYIPEPERAIDKPFLLPIEDV FSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVG VLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFR TTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKV LG" misc_feature complement(3598315..3599493) /gene="tufA" /locus_tag="STM3445" /note="elongation factor Tu; Reviewed; Region: PRK00049" /db_xref="CDD:234596" regulatory complement(3599495..3599500) /regulatory_class="ribosome_binding_site" /gene="tufA" /locus_tag="STM3445" /note="putative RBS for tufA; RegulonDB:STMS1H003447" gene complement(3599565..3601689) /gene="fusA" /locus_tag="STM3446" /db_xref="GeneID:1254969" CDS complement(3599565..3601679) /gene="fusA" /locus_tag="STM3446" /EC_number="3.6.5.3" /note="GTP-binding; elongation factor G (EF-G). (SW:EFG_SALTY)" /codon_start=1 /transl_table=11 /product="protein chain elongation factor EF-G" /protein_id="NP_462350.1" /db_xref="GeneID:1254969" /translation="MARTTPIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVH DGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERS MRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLKVVGQIKT RLGANPVPLQLAIGAEEGFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMQDLANEW HQNLIESAAEASEELMEKYLGGEELTEEEIKQALRQRVLNNEIILVTCGSAFKNKGVQ AMLDAVIDYLPSPVDVPAINGILDDGKDTPAERHASDDEPFSALAFKIATDPFVGNLT FFRVYSGVVNSGDTVLNSVKTARERFGRIVQMHANKREEIKEVRAGDIAAAIGLKDVT TGDTLCDPENPIILERMEFPEPVISIAVEPKTKADQEKMGLALGRLAKEDPSFRVWTD EESNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYREAIRAKVTDIEGKHAKQ SGGRGQYGHVVIDMYPLEPGSNPKGYEFINDIKGGVIPGEYIPAVDKGIQEQLKSGPL AGYPVVDLGVRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVLLEPIMKVEVETP EENTGDVIGDLSRRRGMLKGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTM EFLKYDDAPNNVAQAVIEARGK" misc_feature complement(3599568..3601679) /gene="fusA" /locus_tag="STM3446" /note="Translation elongation factor EF-G, a GTPase [Translation, ribosomal structure and biogenesis]; Region: FusA; COG0480" /db_xref="CDD:440248" regulatory complement(3601684..3601689) /regulatory_class="ribosome_binding_site" /gene="fusA" /locus_tag="STM3446" /note="putative RBS for fusA; RegulonDB:STMS1H003448" gene complement(3601776..3602259) /gene="rpsG" /locus_tag="STM3447" /db_xref="GeneID:1254970" CDS complement(3601776..3602246) /gene="rpsG" /locus_tag="STM3447" /note="initiates assembly; (SW:RS7_SALTY)" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S7" /protein_id="NP_462351.1" /db_xref="GeneID:1254970" /translation="MPRRRVIGQRKILPDPKFGSELLAKFVNILMVDGKKSTAESIVY SALETLAQRSGKSELEAFEVALENVRPTVEVKSRRVGGSTYQVPVEVRPVRRNALAMR WIVEAARKRGDKSMALRLANELSDAADNKGTAVKKREDVHRMAEANKAFAHYRW" misc_feature complement(3601779..3602246) /gene="rpsG" /locus_tag="STM3447" /note="30S ribosomal protein S7; Validated; Region: PRK05302" /db_xref="CDD:235398" misc_feature complement(order(3601890..3601892,3601899..3601904, 3601920..3601922,3601941..3601943,3601953..3601955, 3601962..3601967,3601992..3601994,3602004..3602006, 3602019..3602021,3602121..3602126,3602133..3602147, 3602157..3602165)) /gene="rpsG" /locus_tag="STM3447" /note="rRNA binding site [nucleotide binding]; other site" /db_xref="CDD:271248" misc_feature complement(order(3602115..3602117,3602124..3602129, 3602136..3602138)) /gene="rpsG" /locus_tag="STM3447" /note="S9 interface [polypeptide binding]; other site" /db_xref="CDD:271248" misc_feature complement(3601800..3601802) /gene="rpsG" /locus_tag="STM3447" /note="S11 interface [polypeptide binding]; other site" /db_xref="CDD:271248" regulatory complement(3602254..3602259) /regulatory_class="ribosome_binding_site" /gene="rpsG" /locus_tag="STM3447" /note="putative RBS for rpsG; RegulonDB:STMS1H003449" gene complement(3602342..3602729) /gene="rpsL" /locus_tag="STM3448" /db_xref="GeneID:1254971" CDS complement(3602342..3602716) /gene="rpsL" /locus_tag="STM3448" /note="30S ribosomal protein S12. (SW:RS12_ECOLI)" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S12" /protein_id="NP_462352.1" /db_xref="GeneID:1254971" /translation="MATVNQLVRKPRARKVAKSNVPALEACPQKRGVCTRVYTTTPKK PNSALRKVCRVRLTNGFEVTSYIGGEGHNLQEHSVILIRGGRVKDLPGVRYHTVRGAL DCSGVKDRKQARSKYGVKRPKA" misc_feature complement(3602345..3602716) /gene="rpsL" /locus_tag="STM3448" /note="Ribosomal protein S12 [Translation, ribosomal structure and biogenesis]; Region: RpsL; COG0048" /db_xref="CDD:439818" regulatory complement(3602724..3602729) /regulatory_class="ribosome_binding_site" /gene="rpsL" /locus_tag="STM3448" /note="putative RBS for rpsL; RegulonDB:STMS1H003450" gene complement(3602842..3603138) /gene="yheL" /locus_tag="STM3449" /db_xref="GeneID:1254972" CDS complement(3602842..3603129) /gene="yheL" /locus_tag="STM3449" /note="similar to E. coli orf, hypothetical protein (AAC76368.1); Blastp hit to AAC76368.1 (95 aa), 68% identity in aa 1 - 95" /codon_start=1 /transl_table=11 /product="putative oxidation of intracellular sulfur" /protein_id="NP_462353.1" /db_xref="GeneID:1254972" /translation="MLHTLPHCASSVDFPALLRLLKEGDALLLLQDGVTVAIEGNRFL ESLRDAPITVYALKEDIDARGLGGQISDSVVRVDYTEFVRLTVKYANQMAW" misc_feature complement(3602845..3603129) /gene="yheL" /locus_tag="STM3449" /note="sulfurtransferase complex subunit TusB; Region: PRK13510" /db_xref="CDD:184101" regulatory complement(3603133..3603138) /regulatory_class="ribosome_binding_site" /gene="yheL" /locus_tag="STM3449" /note="putative RBS for yheL; RegulonDB:STMS1H003451" gene complement(3603137..3603507) /gene="yheM" /locus_tag="STM3450" /db_xref="GeneID:1254973" CDS complement(3603137..3603493) /gene="yheM" /locus_tag="STM3450" /note="similar to E. coli orf, hypothetical protein (AAC76369.1); Blastp hit to AAC76369.1 (119 aa), 84% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="putative oxidation of intracellular sulfur" /protein_id="NP_462354.1" /db_xref="GeneID:1254973" /translation="MKRIAFVFSTAPHGSASGREGLDALLATSALTEALGVFFISDGV FQLLPGQKPDAVLARDYIATFKLFDLYDIDQCWICAASLRERGLENINFVVDATPLEP VALRRELGNYDVILRF" misc_feature complement(3603140..3603493) /gene="yheM" /locus_tag="STM3450" /note="sulfurtransferase complex subunit TusC; Region: PRK00211" /db_xref="CDD:178930" gene complement(3603493..3603890) /gene="yheN" /locus_tag="STM3451" /db_xref="GeneID:1254974" CDS complement(3603493..3603879) /gene="yheN" /locus_tag="STM3451" /note="similar to E. coli orf, hypothetical protein (AAC76370.1); Blastp hit to AAC76370.1 (128 aa), 85% identity in aa 1 - 128" /codon_start=1 /transl_table=11 /product="putative ACR involved in intracellular sulfur reduction" /protein_id="NP_462355.1" /db_xref="GeneID:1254974" /translation="MRYAIMVTGPAYGTQQASSALQFAHALLNEGHELASVFFYREGV YNANLLTSPASDEYDLVRAWQKLNTQHGVALNICVAAALRRGIIDETEAGRLALPSAN LQPGFTLSGLGALAEASLTCDRVVQF" misc_feature complement(3603496..3603879) /gene="yheN" /locus_tag="STM3451" /note="sulfurtransferase complex subunit TusD; Region: PRK00207" /db_xref="CDD:178928" regulatory complement(3603502..3603507) /regulatory_class="ribosome_binding_site" /gene="yheM" /locus_tag="STM3450" /note="putative RBS for yheM; RegulonDB:STMS1H003452" gene complement(3603879..3604618) /gene="yheO" /locus_tag="STM3452" /db_xref="GeneID:1254975" CDS complement(3603879..3604601) /gene="yheO" /locus_tag="STM3452" /note="similar to E. coli orf, hypothetical protein (AAC76371.1); Blastp hit to AAC76371.1 (244 aa), 97% identity in aa 5 - 244" /codon_start=1 /transl_table=11 /product="putative regulator" /protein_id="NP_462356.1" /db_xref="GeneID:1254975" /translation="MSRSLLTNETSELDLLDQRPFEQTDFDILKSYEAVVDGLAMLIG SHCEIVLHSLQDLKCSAIRIANGEHTGRKIGSPITDLALRMLHDMTGADSSVSKCYFT RAKSGVLMKSLTIAIRNREQRVIGLLCINMNLDVPFSQIMNTFIPPETPEVGSAVNFA SSVEDLVTQTLEFTIEEVNADRNVSNNAKNRQIVLNLYEKGIFDIKDAINQVADRLNI SKHTVYLYIRQFKSGDFQGQDK" misc_feature complement(3603906..3604535) /gene="yheO" /locus_tag="STM3452" /note="Predicted transcriptional regulator YheO, contains PAS and DNA-binding HTH domains [Transcription]; Region: YheO; COG2964" /db_xref="CDD:442204" regulatory complement(3603885..3603890) /regulatory_class="ribosome_binding_site" /gene="yheN" /locus_tag="STM3451" /note="putative RBS for yheN; RegulonDB:STMS1H003453" regulatory complement(3604613..3604618) /regulatory_class="ribosome_binding_site" /gene="yheO" /locus_tag="STM3452" /note="putative RBS for yheO; RegulonDB:STMS1H003454" gene complement(3604878..3605708) /gene="fkpA" /locus_tag="STM3453" /db_xref="GeneID:1254976" CDS complement(3604878..3605696) /gene="fkpA" /locus_tag="STM3453" /EC_number="5.2.1.8" /note="similar to E. coli FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (AAC76372.1); Blastp hit to AAC76372.1 (270 aa), 90% identity in aa 1 - 270" /codon_start=1 /transl_table=11 /product="FKBP-type peptidyl-prolyl cis-trans isomerase" /protein_id="NP_462357.1" /db_xref="GeneID:1254976" /translation="MKSLFKATLLATTMAVAMHAPITFAADAAKPAATADSKAAFKND DQKAAYALGASLGRYMENSLKEQEKLGIKLDKDQLIAGVQDAFADKSKLSDQEIEQTL QTFEARVKSAAQAKMEKDAADNEAKGKTFRDAFAKEKGVKTSSTGLLYKVEKEGTGEA PKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV IPPELAYGKTGVPGIPANSTLVFDVELLDIKPAPKADAKPADAADAKAADAAKK" misc_feature complement(3604953..3605696) /gene="fkpA" /locus_tag="STM3453" /note="FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK10902" /db_xref="CDD:236791" regulatory complement(3605703..3605708) /regulatory_class="ribosome_binding_site" /gene="fkpA" /locus_tag="STM3453" /note="putative RBS for fkpA; RegulonDB:STMS1H003455" gene 3605906..3606134 /gene="slyX" /locus_tag="STM3454" /db_xref="GeneID:1254977" regulatory 3605906..3605911 /regulatory_class="ribosome_binding_site" /gene="slyX" /locus_tag="STM3454" /note="putative RBS for slyX; RegulonDB:STMS1H003456" CDS 3605916..3606134 /gene="slyX" /locus_tag="STM3454" /note="similar to E. coli host factor for lysis of phiX174 infection (AAC76373.1); Blastp hit to AAC76373.1 (72 aa), 94% identity in aa 1 - 72" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462358.1" /db_xref="GeneID:1254977" /translation="MQDITMEARLAELESRLAFQEITIEELNLTVTAHEMEMAKLRDH LRLLTEKLKASQPSNIASQAEETPPPHY" misc_feature 3605916..3606131 /gene="slyX" /locus_tag="STM3454" /note="phi X174 lysis protein; Provisional; Region: PRK02793" /db_xref="CDD:179472" gene complement(3606322..3606923) /gene="slyD" /locus_tag="STM3455" /db_xref="GeneID:1254978" CDS complement(3606322..3606912) /gene="slyD" /locus_tag="STM3455" /EC_number="5.2.1.8" /note="similar to E. coli FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase) (AAC76374.1); Blastp hit to AAC76374.1 (196 aa), 97% identity in aa 1 - 196" /codon_start=1 /transl_table=11 /product="FKBP-type peptidyl prolyl cis-trans isomerase" /protein_id="NP_462359.1" /db_xref="GeneID:1254978" /translation="MKVAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISG LETALEGHEVGDKFDVAVGANDAYGQYDENLVQRVPKDVFMGVDELQVGMRFLAETDQ GPVPVEITEVEDDHVVVDGNHMLAGQNLKFNVEVVAIREATEEELAHGHVHGAHDHHH DHGEDGCCGGHGHDHGHEHGGEGCCGGGGKGGCGCH" misc_feature complement(3606403..3606912) /gene="slyD" /locus_tag="STM3455" /note="peptidylprolyl isomerase; Region: PRK10737" /db_xref="CDD:236748" regulatory complement(3606918..3606923) /regulatory_class="ribosome_binding_site" /gene="slyD" /locus_tag="STM3455" /note="putative RBS for slyD; RegulonDB:STMS1H003457" gene complement(3607007..3607212) /gene="yheV" /locus_tag="STM3456" /db_xref="GeneID:1254979" CDS complement(3607007..3607207) /gene="yheV" /locus_tag="STM3456" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462360.1" /db_xref="GeneID:1254979" /translation="MAIRKRFIAGAKCPACQAQDTMAMWRENNVDIVECVKCGHQMRE ADKDVREHVRKEEQVIGIFHPD" misc_feature complement(3607010..3607207) /gene="yheV" /locus_tag="STM3456" /note="Predicted nucleic-acid-binding protein, contains Zn-ribbon domain [General function prediction only]; Region: COG3529" /db_xref="CDD:442751" regulatory complement(3607207..3607212) /regulatory_class="ribosome_binding_site" /gene="yheV" /locus_tag="STM3456" /note="putative RBS for yheV; RegulonDB:STMS1H003458" gene complement(3607218..3609033) /gene="kefB" /locus_tag="STM3457" /db_xref="GeneID:1254980" CDS complement(3607218..3609023) /gene="kefB" /locus_tag="STM3457" /note="similar to E. coli K+ efflux; NEM-activable K+/H+ antiporter (AAC76375.1); Blastp hit to AAC76375.1 (601 aa), 93% identity in aa 1 - 601" /codon_start=1 /transl_table=11 /product="CPA2 family K+:H+ antiporter" /protein_id="NP_462361.1" /db_xref="GeneID:1254980" /translation="MEGADLLTAGVLFLFAAVAAVPLAARLGIGAVLGYLLAGIAIGP WGLGFISDVDEILHFSELGVVFLMFIIGLELNPSRLWQLRRSIFGVGAAQVLLSAAVL AGLLMLADFLWQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQDLAV IPALALVPLLAGSADEHFDWFKVAMKVLAFAVMLIGGRYLLRPVFRFIAASGVREVFT AATLLLVLSAALFMDALGLSMALGTFIAGVLLAESEYRHELENAIDPFKGLLLGLFFI SVGMSLNLGVLYTHLLWVAASVVILVVIKMLTLYLLARLYGIRSSERMQFASVLSQGG EFAFVLFSTASSQRLFQGDQMALLLVTVTLSMMTTPLLMKGIDKWLSRRLNGPEENDE KPWVEDDKPQVIVVGFGRFGQVIARLLMANKMRITVLERDIGAVNLMRKYGYKVYYGD ATQVELLRSAGAEAAESIVITCNEPEDTMKLVALCQQHFPHLHILARARGRVEAHELL QAGVTQFSRETFSSALELGRKTLVSLGMHPHQAQRAQLHFRRLDMRMLRELIPEHSDM VQISRAREARRELEEIFQREMQQERRQLDGWDEFE" misc_feature complement(3607224..3609023) /gene="kefB" /locus_tag="STM3457" /note="glutathione-regulated potassium-efflux system protein KefB; Provisional; Region: PRK03659" /db_xref="CDD:179625" gene complement(3609023..3609585) /gene="yheR" /locus_tag="STM3458" /db_xref="GeneID:1254981" CDS complement(3609023..3609574) /gene="yheR" /locus_tag="STM3458" /note="similar to E. coli putative NAD(P)H oxidoreductase (AAC76376.1); Blastp hit to AAC76376.1 (184 aa), 89% identity in aa 2 - 183" /codon_start=1 /transl_table=11 /product="putative NAD(P)H oxidoreductase" /protein_id="NP_462362.1" /db_xref="GeneID:1254981" /translation="MSQPAKVLLLYAHPESQDSVANRVLLKPAIQHNNVTVHDLYARY PDFFIDTPYEQALLREHDVIVFQHPLYTYSCPALLKEWLDRVLSRGFASGPGGNQLVG KYWRSVITTGEPESAYRYDALNRYPMSDVLRPFELTAAMCRMHWMPPIIVYWARRQSP QTLASHAKAYGEWLANPVSAGGY" misc_feature complement(3609026..3609574) /gene="yheR" /locus_tag="STM3458" /note="glutathione-regulated potassium-efflux system ancillary protein KefG; Provisional; Region: PRK04930" /db_xref="CDD:179895" regulatory complement(3609028..3609033) /regulatory_class="ribosome_binding_site" /gene="yheR" /locus_tag="STM3458" /note="putative RBS for kefB; RegulonDB:STMS1H003459" regulatory complement(3609580..3609585) /regulatory_class="ribosome_binding_site" /gene="yheR" /locus_tag="STM3458" /note="putative RBS for yheR; RegulonDB:STMS1H003460" gene 3609830..3611747 /gene="yheS" /locus_tag="STM3459" /db_xref="GeneID:1254982" regulatory 3609830..3609835 /regulatory_class="ribosome_binding_site" /gene="yheS" /locus_tag="STM3459" /note="putative RBS for yheS; RegulonDB:STMS1H003461" CDS 3609840..3611747 /gene="yheS" /locus_tag="STM3459" /note="contains duplicated ATPase domain; similar to E. coli putative ATP-binding component of a transport system (AAC76377.1); Blastp hit to AAC76377.1 (637 aa), 93% identity in aa 1 - 631" /codon_start=1 /transl_table=11 /product="putative ATPase component of ABC transporter" /protein_id="NP_462363.1" /db_xref="GeneID:1254982" /translation="MIVFSSLQIRRGVRVLLDNASATINPGQKVGLVGKNGCGKSTLL ALLKNEISADAGSFTLPGTWQLAWVNQETPALPQPAIEYVIDGDREYRQLEAQLNDAN ERNDGHAIASIHGKLDAIDAWTVRSRAASLLHGLGFSNDQLERPVSDFSGGWRMRLNL AQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYPGTLILISHDRDFLDPIVDKIIH IEQQTLFEYTGNYSAFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQA QSRIKMLERMELIAPAHVDNPFHFSFRAPESLPNPLLKMEKVSAGYGDRIILESIKLN LVPGSRIGLLGRNGAGKSTLIKLLAGELEPLHGEIGLAKGIKLGYFAQHQLEFLRADE SPLQHMARLAPQELEQKLRDYLGGFGFQGDKVTEETQRFSGGEKARLVLALIVWQRPN LLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLIRSTTDDLYLVHDKKVEPF DGDLEDYQQWLSDVQKQENQADNAPKENNANSAQSRKDQKRREAELRTLTQPLRKEIT RLEKEMEKLNAQLAQAEEKLGDSSLYDPSRKAEMTECLQLQASAKSGLEACEMAWLEA QEQLEQMMQND" misc_feature 3609840..3611744 /gene="yheS" /locus_tag="STM3459" /note="putative ABC transporter ATP-binding protein; Provisional; Region: PRK10636" /db_xref="CDD:236729" gene complement(3611815..3612050) /locus_tag="STM3460" /note="pseudogene; in-frame stop following codon 15" /pseudo /db_xref="GeneID:1254983" gene complement(3612133..3612455) /locus_tag="STM3461" /db_xref="GeneID:1254984" CDS complement(3612133..3612444) /locus_tag="STM3461" /note="similar to E. coli orf, hypothetical protein (AAC74737.1); Blastp hit to AAC74737.1 (101 aa), 65% identity in aa 3 - 100" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462364.1" /db_xref="GeneID:1254984" /translation="MSKTLLQIHFNFSGPFGEEMTQQLVGLAESINEEPGFIWKIWTE SEKNQQAGGIYLFESEETAQAYIKKHTARLKNLGVDEVTFTLFGVNDALTKINHGNLC R" misc_feature complement(3612142..3612438) /locus_tag="STM3461" /note="putative monooxygenase; Provisional; Region: PRK11118" /db_xref="CDD:182975" regulatory complement(3612450..3612455) /regulatory_class="ribosome_binding_site" /locus_tag="STM3461" /note="putative RBS for STM3461; RegulonDB:STMS1H003463" gene 3612642..3613709 /gene="yheT" /locus_tag="STM3462" /db_xref="GeneID:1254985" CDS 3612642..3613709 /gene="yheT" /locus_tag="STM3462" /note="contains alpha/beta-hydrolase fold; similar to E. coli orf, hypothetical protein (AAC76378.1); Blastp hit to AAC76378.1 (340 aa), 84% identity in aa 1 - 339" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_462365.1" /db_xref="GeneID:1254985" /translation="MRGIVLFPIINCSGAMVEITSTEMTPPVNDSHEFIPMRGIRNRH LQTMLPRLIRRKVKFNAHWQRLELPDGDFVDLAWSEDPQQAKYKPRLVVFHGLEGSLN SPYAHGLIEAAQKRGWLGVVMHFRGCSGEPNRLNRIYHSGETEDGAWFLRWLQREFGA VPTAAVGYSLGGNMLACLLAKEGRDIPIEAAVIVSAPFVLEACSYHMDKGFSRVYQRY LLNLLKANASRKLAAYPGSLPVNLAQLKSMRRIREFDDLITAKIHGFADAIDYYRQCS AMPLLNQIAKPTLIIHAKDDPFMDHHVIPKAEDLPPQVEYQLTEHGGHVGFIGGTPLR PEMWLERRIPDWLTTYLEASS" misc_feature 3612732..3613703 /gene="yheT" /locus_tag="STM3462" /note="putative hydrolase; Provisional; Region: PRK10985" /db_xref="CDD:182883" gene 3613717..3613794 /gene="yheU" /locus_tag="STM3463" /db_xref="GeneID:1254986" CDS 3613717..3613794 /gene="yheU" /locus_tag="STM3463" /note="similar to E. coli orf, hypothetical protein (AAC76379.1); Blastp hit to AAC76379.1 (72 aa), 89% identity in aa 8 - 72" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462366.4" /db_xref="GeneID:1254986" /translation="MAGARPRHAGQPDRKLCVARRHRLW" gene 3613965..3614845 /gene="prkB" /locus_tag="STM3464" /db_xref="GeneID:1254987" regulatory 3613965..3613970 /regulatory_class="ribosome_binding_site" /gene="prkB" /locus_tag="STM3464" /note="putative RBS for prkB; RegulonDB:STMS1H003464" CDS 3613976..3614845 /gene="prkB" /locus_tag="STM3464" /EC_number="2.7.1.19" /note="similar to E. coli probable phosphoribulokinase (AAC76380.1); Blastp hit to AAC76380.1 (289 aa), 97% identity in aa 1 - 289" /codon_start=1 /transl_table=11 /product="putative phosphoribulokinase" /protein_id="NP_462367.1" /db_xref="GeneID:1254987" /translation="MSAKHPVIAVTGSSGAGTTTTSLAFRKIFAQLNLHAAEVEGDSF HRYTRPEMDMAIRKARDAGRHISYFGPEANDFSLLEHTFIEYGQTGKGQSRKYLHTYD EAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHDVARHVDLLVGVVPIVNLE WIQKLIRDTSERGHSREAVMDSVVRSMDDYINYITPQFSRTHINFQRVPTVDTSNPFA AKGIPSLDESFVVIHFRNLEGIDFPWLLAMLQGSFISHINTLVVPGGKMGLAMELIML PLVQRLMEGKKIE" misc_feature 3613976..3614839 /gene="prkB" /locus_tag="STM3464" /note="phosphoribulokinase; Provisional; Region: PRK15453" /db_xref="CDD:237970" misc_feature order(3614009..3614011,3614024..3614035) /gene="prkB" /locus_tag="STM3464" /note="active site" /db_xref="CDD:238977" gene complement(3614941..3615513) /gene="yhfA" /locus_tag="STM3465" /db_xref="GeneID:1254988" CDS complement(3614941..3615345) /gene="yhfA" /locus_tag="STM3465" /note="similar to E. coli orf, hypothetical protein (AAC76381.1); Blastp hit to AAC76381.1 (134 aa), 94% identity in aa 1 - 134" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462368.1" /db_xref="GeneID:1254988" /translation="MQARVKWVEGLTFLGESSSGHQILMDGNSGDKAPSPMEMVLMAA GGCSAIDVVSILQKGRQNVTNCEVKLTSERREDAPRLFTHINLHFIVTGSDLKEAAVA RAVDLSAEKYCSVALMLEKAVNITHSYEVIAA" misc_feature complement(3614944..3615345) /gene="yhfA" /locus_tag="STM3465" /note="OsmC family protein; Region: PRK10738" /db_xref="CDD:182688" regulatory complement(3615355..3615360) /regulatory_class="ribosome_binding_site" /gene="yhfA" /locus_tag="STM3465" /note="putative RBS for yhfA; RegulonDB:STMS1H003465" protein_bind complement(3615424..3615444) /gene="yhfA" /locus_tag="STM3465" /note="putative binding site for CRP, RegulonDB: STMS1H000123" /bound_moiety="CRP" protein_bind 3615430..3615443 /note="putative binding site for CRP, RegulonDB: STMS1H000077" /bound_moiety="CRP" gene 3615460..3616285 /gene="crp" /locus_tag="STM3466" /db_xref="GeneID:1254989" regulatory 3615460..3615468 /regulatory_class="minus_35_signal" /gene="crp" /locus_tag="STM3466" /note="putative -35_signal for crp; RegulonDB:STMLTH004592" regulatory 3615484..3615492 /regulatory_class="minus_10_signal" /gene="crp" /locus_tag="STM3466" /note="putative -10_signal for crp; RegulonDB:STMLTH004592" regulatory complement(3615489..3615497) /regulatory_class="minus_10_signal" /gene="yhfA" /locus_tag="STM3465" /note="putative -10_signal for yhfA; RegulonDB:STMLTH004591" regulatory complement(3615505..3615513) /regulatory_class="minus_35_signal" /gene="yhfA" /locus_tag="STM3465" /note="putative -35_signal for yhfA; RegulonDB:STMLTH004591" protein_bind complement(3615510..3615530) /note="putative binding site for CRP, RegulonDB: STMS1H000098" /bound_moiety="CRP" protein_bind 3615514..3615534 /gene="crp" /locus_tag="STM3466" /note="putative binding site for CRP, RegulonDB: STMS1H000086" /bound_moiety="CRP" regulatory 3615639..3615644 /regulatory_class="ribosome_binding_site" /gene="crp" /locus_tag="STM3466" /note="putative RBS for crp; RegulonDB:STMS1H003466" CDS 3615653..3616285 /gene="crp" /locus_tag="STM3466" /note="catabolite gene activator (CAMP receptor protein) (CAMP-regulatoryprotein). (SW:CRP_SALTY); cyclic AMP receptor protein (CRP family)" /codon_start=1 /transl_table=11 /product="catabolite activator protein (CAP)" /protein_id="NP_462369.1" /db_xref="GeneID:1254989" /translation="MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIV KGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKK FRQLIQVNPDILMRLSSQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR" misc_feature 3615653..3616282 /gene="crp" /locus_tag="STM3466" /note="cAMP-activated global transcriptional regulator CRP; Region: PRK11753" /db_xref="CDD:236969" gene 3616334..3618421 /gene="yhfK" /locus_tag="STM3467" /db_xref="GeneID:1254990" CDS 3616334..3618421 /gene="yhfK" /locus_tag="STM3467" /note="similar to E. coli orf, hypothetical protein (AAC76383.1); Blastp hit to AAC76383.1 (696 aa), 86% identity in aa 1 - 695" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462370.1" /db_xref="GeneID:1254990" /translation="MWRRLIYHPEINYALRQTLVLCLPVAVGLLIGQLHLGLLFSLVP ACCNIAGLDTPHKRFFKRLIIGASLFAGCSLVTQLLLAESIPLPLILTGLTLVLGVTA EISPLHARLLPASLIAAIFTLSLAGYMPVWEPLLIYALGTLWYGVFNWFWFWLWREQP LRESLSLLYRELADYCEAKYSLLTQHIDPEKALPPLLIRQQKAVDLITQCYQQMHMLS AHNNNDYKRLLRAFQEAMDLQEHISVSLHQPEEVQKLVERSHAEEVIRWNAQTVAARL RVLADDILYHRLPTRFSMEKQIGALEKIANQHPENPVGQFCYWHFSRIARVLRTQRPL YARDLMADKQRRLPLLPALKNYMSLKSPALRNAGRISVMMSIASLMGSALHLPKPYWI LMTVLFVTQNGYGATRVRILHRSVGTLVGLVIAGVTLHLHIPESITLAVMLVLTLASY LIIRKNYGWATVGFTVTAVYTIQLLTLNGEQFIVPRLIDTLIGCLIAFGGMVWLWPQW QSGLLRKNAHDALEAAQEAIRLILSNDPQATPLAYQRMRVNQAHNTLFNSLNQAMQEP GFNTHYLSDMKLWVTHSQFIVEHINAMTTLAREHTMLTPDLAQRYLESCEIAIQRCQQ RLEYDRPGGSGDVNILESPDMPSHGLLSTLEQHLQRIIGHLNTMHTISSMAWRQRPHH GIWLSKRLRDTKG" misc_feature 3616367..3618358 /gene="yhfK" /locus_tag="STM3467" /note="integral membrane protein, YccS/YhfK family; Region: YCCS_YHJK; TIGR01667" /db_xref="CDD:130728" gene complement(3618464..3619751) /gene="argD" /locus_tag="STM3468" /db_xref="GeneID:1254991" CDS complement(3618464..3619681) /gene="argD" /locus_tag="STM3468" /EC_number="2.6.1.11" /note="NAcOATase and DapATase; similar to E. coli acetylornithine delta-aminotransferase (AAC76384.1); Blastp hit to AAC76384.1 (406 aa), 91% identity in aa 1 - 404" /codon_start=1 /transl_table=11 /product="acetylornithine transaminase" /protein_id="NP_462371.1" /db_xref="GeneID:1254991" /translation="MATEQTAITRATFDEVILPVYAPADFIPVKGKGSRVWDQQGKEY IDFAGGIAVTALGHCHPALVEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERV LFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDG FGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDE HQALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGFPVSAMLTTQEIASAF HVGSHGSTYGGNPLACAVAGAAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSD IRGMGLLIGAELKPKYKGRARDFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEG MQRFAQAVGKVVA" misc_feature complement(3618467..3619675) /gene="argD" /locus_tag="STM3468" /note="acetylornithine/succinyldiaminopimelate transaminase; Region: argD; PRK05093" /db_xref="CDD:179933" misc_feature complement(order(3618917..3618919,3618995..3619000, 3619004..3619006,3619103..3619105,3619250..3619252, 3619256..3619261,3619355..3619363)) /gene="argD" /locus_tag="STM3468" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99735" misc_feature complement(order(3618917..3618919,3618995..3618997, 3619004..3619006,3619103..3619105,3619256..3619261, 3619355..3619360)) /gene="argD" /locus_tag="STM3468" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99735" misc_feature complement(3618917..3618919) /gene="argD" /locus_tag="STM3468" /note="catalytic residue [active]" /db_xref="CDD:99735" regulatory complement(3619687..3619692) /regulatory_class="ribosome_binding_site" /gene="argD" /locus_tag="STM3468" /note="putative RBS for argD; RegulonDB:STMS1H003467" regulatory complement(3619725..3619733) /regulatory_class="minus_10_signal" /gene="argD" /locus_tag="STM3468" /note="putative -10_signal for argD; RegulonDB:STMLTH004593" regulatory complement(3619743..3619751) /regulatory_class="minus_35_signal" /gene="argD" /locus_tag="STM3468" /note="putative -35_signal for argD; RegulonDB:STMLTH004593" gene complement(3619767..3620341) /gene="pabA" /locus_tag="STM3469" /db_xref="GeneID:1254992" CDS complement(3619767..3620330) /gene="pabA" /locus_tag="STM3469" /EC_number="4.1.3.-" /note="para-aminobenzoate synthase glutamine amidotransferase component II. (SW:PABA_SALTY)" /codon_start=1 /transl_table=11 /product="p-aminobenzoate synthetase component II" /protein_id="NP_462372.1" /db_xref="GeneID:1254992" /translation="MILLIDNYDSFTWNLYQYFCELGAEVQVRRNDALTLAHIDALNP QKIVISPGPCTPNDAGISLAVIRHYAGRIPMLGVCLGHQAMAQAFGASVVRAAKVMHG KTSPVTHNGQGVFRGLPSPLTVTRYHSLIVDPATLPECFEITAWSETQEIMGIRHREW DLEGVQFHPESILSEQGHALLKNFLRR" misc_feature complement(3619770..3620330) /gene="pabA" /locus_tag="STM3469" /note="aminodeoxychorismate synthase component 2; Region: PRK08007" /db_xref="CDD:181194" misc_feature complement(order(3619941..3619952,3620082..3620084, 3620091..3620096,3620169..3620171,3620175..3620180)) /gene="pabA" /locus_tag="STM3469" /note="glutamine binding [chemical binding]; other site" /db_xref="CDD:153214" misc_feature complement(order(3619821..3619823,3619827..3619829, 3620094..3620096)) /gene="pabA" /locus_tag="STM3469" /note="catalytic triad [active]" /db_xref="CDD:153214" regulatory complement(3620336..3620341) /regulatory_class="ribosome_binding_site" /gene="pabA" /locus_tag="STM3469" /note="putative RBS for pabA; RegulonDB:STMS1H003468" gene complement(3620362..3620972) /gene="fic" /locus_tag="STM3470" /db_xref="GeneID:1254993" CDS complement(3620362..3620964) /gene="fic" /locus_tag="STM3470" /note="stationary phase induced gene; affects cell division; cell filamentation protein FIC. (SW:FIC_SALTY)" /codon_start=1 /transl_table=11 /product="putative cell filamentation protein" /protein_id="NP_462373.1" /db_xref="GeneID:1254993" /translation="MSDKFGEGRDPYLYPGLNVMRNRLGIHQAQRLAQAAYEMTALRA ATIELGPLVRGLPHLCAIHRQLYQDIFDWAGQLREVDIYQGDTRFCHFAYIEKEGNAL MQDLEEEGYLVGLAHEKFVERLAHYYCEINVLHPFRFGSGLAQRIFFEQLALHAGYAL SWQGIAVETWKQANQSGAMGDLSALRAIFQKAISEARETE" misc_feature complement(3620365..3620964) /gene="fic" /locus_tag="STM3470" /note="putative adenosine monophosphate-protein transferase Fic; Region: PRK10347" /db_xref="CDD:182396" gene complement(3620954..3621133) /gene="yhfG" /locus_tag="STM3471" /db_xref="GeneID:1254994" CDS complement(3620954..3621121) /gene="yhfG" /locus_tag="STM3471" /note="hypothetical 6.8 Kda protein in fic-ppiA intergenic region. (SW:YHFG_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462374.1" /db_xref="GeneID:1254994" /translation="MKKLTDKQKSRFWEQRRNVNFQQSRRLEGIEIPLVTLTADEALV RLDELRRHYER" misc_feature complement(3620957..3621121) /gene="yhfG" /locus_tag="STM3471" /note="hypothetical protein; Provisional; Region: PRK10204" /db_xref="CDD:182304" regulatory complement(3620967..3620972) /regulatory_class="ribosome_binding_site" /gene="yhfG" /locus_tag="STM3471" /note="putative RBS for fic; RegulonDB:STMS1H003469" regulatory complement(3621128..3621133) /regulatory_class="ribosome_binding_site" /gene="yhfG" /locus_tag="STM3471" /note="putative RBS for yhfG; RegulonDB:STMS1H003470" gene complement(3621230..3621875) /gene="ppiA" /locus_tag="STM3472" /db_xref="GeneID:1254995" CDS complement(3621230..3621802) /gene="ppiA" /locus_tag="STM3472" /EC_number="5.2.1.8" /note="peptidyl-prolyl cis-trans isomerase A. (SW:PPIA_SALTY); rotamase A" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase A" /protein_id="NP_462375.1" /db_xref="GeneID:1254995" /translation="MLKSTLAAVAAVFALSALSPAALAAKGDPHVLLTTSAGNIELEL NSQKAPVSVKNFVDYVNSGFYNNTTFHRVIPGFMIQGGGFNEQMQQKKPNPPIKNEAD NGLRNTRGTIAMARTADKDSATSQFFINVADNAFLDHGQRDFGYAVFGKVVKGMDVAD KISQVPTHDVGPYQNVPTKPVVILSAKVLP" misc_feature complement(3621233..3621802) /gene="ppiA" /locus_tag="STM3472" /note="peptidylprolyl isomerase A; Region: PRK10903" /db_xref="CDD:182824" misc_feature complement(order(3621365..3621367,3621392..3621397, 3621419..3621421,3621443..3621460,3621563..3621565, 3621569..3621574,3621581..3621583,3621587..3621589)) /gene="ppiA" /locus_tag="STM3472" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238901" regulatory complement(3621808..3621813) /regulatory_class="ribosome_binding_site" /gene="ppiA" /locus_tag="STM3472" /note="putative RBS for ppiA; RegulonDB:STMS1H003471" regulatory complement(3621851..3621859) /regulatory_class="minus_10_signal" /gene="ppiA" /locus_tag="STM3472" /note="putative -10_signal for ppiA; RegulonDB:STMLTH004594" regulatory complement(3621867..3621875) /regulatory_class="minus_35_signal" /gene="ppiA" /locus_tag="STM3472" /note="putative -35_signal for ppiA; RegulonDB:STMLTH004594" protein_bind complement(3621936..3621956) /note="putative binding site for CRP, RegulonDB: STMS1H000052" /bound_moiety="CRP" protein_bind complement(3621990..3622010) /note="putative binding site for CRP, RegulonDB: STMS1H000115" /bound_moiety="CRP" gene 3622069..3623260 /gene="yhfC" /locus_tag="STM3473" /db_xref="GeneID:1254996" regulatory 3622069..3622074 /regulatory_class="ribosome_binding_site" /gene="yhfC" /locus_tag="STM3473" /note="putative RBS for yhfC; RegulonDB:STMS1H003472" CDS 3622079..3623260 /gene="yhfC" /locus_tag="STM3473" /note="similar to E. coli putative transport (AAC76389.1); Blastp hit to AAC76389.1 (393 aa), 90% identity in aa 1 - 393" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_462376.1" /db_xref="GeneID:1254996" /translation="MTNSNRIKLTWISFLSYALTGALVIVTGMVMGNIADYFHLPVSS MSNTFTFLNAGILISIFLNAWLMEIIPLKTQLRFGFILMVLAVAGLMFGHSLALFSAA MFVLGLVSGITMSIGTFLITQLYEGRQRGSRLLFTDSFFSMAGMIFPMVAAFLLARSI EWYWVYACIGLVYLAIFILTFGCEFPALGKHAQHSQAPVVKEKWGIGVLFLAVAALCY ILGQLGFISWVPEYAKGLGMSLNDAGALVSDFWMSYMFGMWAFSFILRFFDLQRILTV LAGMAAVLMYLFITGTQAHMPWFILTLGFFSSAIYTSIITLGSQQTKVASPKLVNFIL TCGTIGTMLTFVVTGPIVAHSGPQAALLTANGLYAVVFVMCFALGFVSRHRQHSAPAT H" misc_feature 3622082..3623257 /gene="yhfC" /locus_tag="STM3473" /note="putative transporter; Provisional; Region: PRK03699" /db_xref="CDD:235151" gene 3623325..3626066 /gene="nirB" /locus_tag="STM3474" /db_xref="GeneID:1254997" regulatory 3623325..3623333 /regulatory_class="minus_35_signal" /gene="nirB" /locus_tag="STM3474" /note="putative -35_signal for nirB; RegulonDB:STMLTH004595" regulatory 3623349..3623357 /regulatory_class="minus_10_signal" /gene="nirB" /locus_tag="STM3474" /note="putative -10_signal for nirB; RegulonDB:STMLTH004595" protein_bind 3623398..3623420 /gene="nirB" /locus_tag="STM3474" /note="putative binding site for FNR, RegulonDB: STMS1H000151" /bound_moiety="FNR" protein_bind 3623422..3623442 /gene="nirB" /locus_tag="STM3474" /note="putative binding site for NarL, RegulonDB: STMS1H000309" /bound_moiety="NarL" protein_bind 3623450..3623472 /gene="nirB" /locus_tag="STM3474" /note="putative binding site for FNR, RegulonDB: STMS1H000165" /bound_moiety="FNR" regulatory 3623514..3623519 /regulatory_class="ribosome_binding_site" /gene="nirB" /locus_tag="STM3474" /note="putative RBS for nirB; RegulonDB:STMS1H003473" CDS 3623523..3626066 /gene="nirB" /locus_tag="STM3474" /EC_number="1.6.6.-" /note="similar to E. coli nitrite reductase (NAD(P)H) subunit (AAC76390.1); Blastp hit to AAC76390.1 (847 aa), 95% identity in aa 1 - 847" /codon_start=1 /transl_table=11 /product="nitrite reductase large subunit" /protein_id="NP_462377.1" /db_xref="GeneID:1254997" /translation="MSKVRLAIIGNGMVGHRFIEDLLDKSDASLFDITVFCEEPRKAY DRVHLSSYFSHHTAEELSLVREGFYEKHGVKVLVGERAITINRQEKVIHSSAGRTVYY DKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEACARRSKRGAVVGGGLLGLEA AGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTQEIVQQGN EARKTMRFADGSELEVDFIVFSTGIRPRDKLATQCGLAVAQRGGIVINDTCQTSDPDI YAIGECASWNNRVYGLVAPGYKMAQVAVDHILGSENAFEGADLSAKLKLLGVDVGGIG DAHGRTPGARSYVYLDESKEVYKRLIVSEDNKTLLGAVLVGDTSDYGNLLQLVLNAIE LPENPDSLILPSHAGSGKPAIGVDKLPDSAQICSCFDVTKGDLIAAINKGCHTVAALK AETKAGTGCGGCIPLVTQVLNAELAKQGIEVNNNLCEHFAYSRQELFHLIRVEGIKTF EELLAKHGKGYGCEVCKPTVGSLLASCWNEYILKPQHTPLQDTNDNFLANIQKDGTYS VIPRSAGGEITPEGLVAVGRIAREFNLYTKITGSQRIGLFGAQKDDLPEIWRQLIEAG FETGHAYAKALRMAKTCVGSTWCRYGVGDSVGFGVELENRYKGIRTPHKMKFGVSGCT RECAEAQGKDVGIIATEKGWNLYVCGNGGMKPRHADLLAADLDRDTLIKYLDRFMMFY IRTADKLTRTAPWLDNLEGGIEYLKSVIIDDKLGLNEHLEEEMARLRAAVVCEWTETV NTPSAQVRFKHFINSDKRDPNVQVVPEREQHRPATPYERIPVTLVEENA" misc_feature 3623523..3626063 /gene="nirB" /locus_tag="STM3474" /note="nitrite reductase subunit NirD; Provisional; Region: PRK14989" /db_xref="CDD:184951" gene 3626052..3626389 /gene="nirD" /locus_tag="STM3475" /db_xref="GeneID:1254998" regulatory 3626052..3626057 /regulatory_class="ribosome_binding_site" /gene="nirD" /locus_tag="STM3475" /note="putative RBS for nirD; RegulonDB:STMS1H003474" CDS 3626063..3626389 /gene="nirD" /locus_tag="STM3475" /EC_number="1.6.6.-" /note="nitrite reductase [NAD(P)H] small subunit. (SW:NIRD_SALTY)" /codon_start=1 /transl_table=11 /product="nitrite reductase small subunit" /protein_id="NP_462378.1" /db_xref="GeneID:1254998" /translation="MSQWQNICKIDDILPGTGVCALSGGEQVAIFRPYHSDQVFAISN IDPFFEASVLSRGLIAEHQGELWVASPLKKQRFRLSDGLCMEDEQFSVKHYDARVKDG VVQLRG" misc_feature 3626063..3626386 /gene="nirD" /locus_tag="STM3475" /note="nitrite reductase small subunit NirD; Region: nirD; PRK09511" /db_xref="CDD:181921" gene 3626649..3627464 /gene="nirC" /locus_tag="STM3476" /db_xref="GeneID:1254999" regulatory 3626649..3626654 /regulatory_class="ribosome_binding_site" /gene="nirC" /locus_tag="STM3476" /note="putative RBS for nirC; RegulonDB:STMS1H003475" CDS 3626655..3627464 /gene="nirC" /locus_tag="STM3476" /note="potential nitrite transporter. (SW:NIRC_SALTY)" /codon_start=1 /transl_table=11 /product="FNT family nitrite transport protein" /protein_id="NP_462379.1" /db_xref="GeneID:1254999" /translation="MFTDTINKCAANAARIARLSANNPLGFWVSSAMAGAYVGLGIIL IFTLGNLLDPSVRPLVMGATFGIALTLVIIAGSELFTGHTMFLTLGVKAGTISHGQMW AILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIVHSVALAKTTAPATVLFFKGALC NWLVCLAIWMAIRTEGTAKFLAIWWCLLAFIASGYEHSVANMTLFALSWFGHHSDAYT LAGIGHNLLWVTLGNTLSGVVFMGLGYWYATPKSERPAPAKINQPEAAANN" misc_feature 3626655..3627458 /gene="nirC" /locus_tag="STM3476" /note="nitrite transporter NirC; Provisional; Region: PRK11562" /db_xref="CDD:183200" gene 3627463..3628849 /gene="cysG" /locus_tag="STM3477" /db_xref="GeneID:1255000" regulatory 3627463..3627468 /regulatory_class="ribosome_binding_site" /gene="cysG" /locus_tag="STM3477" /note="putative RBS for cysG; RegulonDB:STMS1H003476" CDS 3627476..3628849 /gene="cysG" /locus_tag="STM3477" /EC_number="1.-.-.-" /EC_number="2.1.1.107" /EC_number="4.99.1.-" /note="catalyses four separate reactions that are required for the transformation of uroporphyrinogen III into siroheme; SIROHEME synthase [includes: uroporphyrin-III C-methyltransferase]. (SW:CYSG_SALTY)" /codon_start=1 /transl_table=11 /product="siroheme synthase" /protein_id="NP_462380.1" /db_xref="GeneID:1255000" /translation="MDHLPIFCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALT FIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV VDAPKAASFIMPSIIDRSPLMVAVSSGGTSPVLARLLREKLESLLPQHLGQVARYAGQ LRARVKKQFATMGERRRFWEKFFVNDRLAQSLANADEKAVNATTERLFSEPLDHRGEV VLVGAGPGDAGLLTLKGLQQIQQADIVVYDRLVSDDIMNLVRRDADRVFVGKRAGYHC VPQEEINQILLREAQKGKRVVRLKGGDPFIFGRGGEELETLCHAGIPFSVVPGITAAS GCSAYSGIPLTHRDYAQSVRLVTGHLKTGGELDWENLAAEKQTLVFYMGLNQAATIQE KLIAFGMQADMPVALVENGTSVKQRVVHGVLTQLGELAQQVESPALIIVGRVVALRDK LNWFSNH" misc_feature 3627476..3628846 /gene="cysG" /locus_tag="STM3477" /note="siroheme synthase CysG; Region: cysG; PRK10637" /db_xref="CDD:182606" gene 3629155..3635036 /gene="bigA" /locus_tag="STM3478" /db_xref="GeneID:1255001" regulatory 3629155..3629160 /regulatory_class="ribosome_binding_site" /gene="bigA" /locus_tag="STM3478" /note="putative RBS for bigA; RegulonDB:STMS1H003477" CDS 3629175..3635036 /gene="bigA" /locus_tag="STM3478" /note="putative surface-exposed virulence protein BigA (gi|5081595)" /codon_start=1 /transl_table=11 /product="putative surface-exposed virulence protein" /protein_id="NP_462381.1" /db_xref="GeneID:1255001" /translation="MNPMQKKKLISIAIALTLQSYYIPAIAAENNDDEKECPSNISSL PKEKRAKLSPTCLATPENDNHWGWVAGGVAALVAGVAIGVENNGGGDSNHSYTPPKPD NGGDVTPPDDGGNVTPPDDGGNVTPPDDGGDDNVTPPDDSGDDDVAPPDDSGDDDVTP PDDSGDDDVTPPDDSGDGDVTPPDDSGDDDVTPPDDSGDDDVTPPDDSGDDDVTPPDD SGDDDVTPPDDSGDDDVTPPDDSGDDDDTPPDDSVITFSNGVTIDKGKDTLTFDSFKL DNGSVLEGAVWNYSEQDNQWQLTTADGKTLNVTGWDVTDANAAVIEGTQENGLYWKYD SRGYLIIADDNTTVISGDDQAHNSDRGMDISGQDRTGVIISGDRTVNTLTGDSSVTDG ATGMVISGDGTTNTISGHSTVDNATGALISGNGTTTNFAGDIAVSGGGTAIIIDGDNA TIKNTGTSDISGAGSTGTVIDGNNARVNNDGDMTITDGGTGGHITGDNVVIDNAGSTT VSGADATALYIEGDNALVINEGNQTISGGAVGTRIDGDDAHTTNTGDIAVDGAGSAAV IINGDNGSLTQAGDLLVTDGAMGIITYGTGNEAKNTGNATVRDADSVGFVVAGEKNTF KNKGDIDVSLNGTGALVSGDMSQVTLDGDINVVSVQDSEGVFSSATGVSVSGDSNAVD ITGNVNISADYGQDDLAAGAPPLTGVVVGGNGNTVTLNGALNIDDNDLSATGGQYLDV VGLSVTGDDNDVEIDGGINITHSEDPLDGTSADITGISVSGNSTVTLNGHSTIDTNTV VGGHVVLARVNNGGSLILGDDSVVDVNVSYIPTGYYTYNALLMADGEGTSIENKGDIT SHGVYSVIRADNGSEVSNSGDILVYATSSNSSEDRAAITRASGEGSAVHNKAGGDITL ISDQTPQGSGGIEVYPLKWYTHTFYAMMASDYGDVVNDEGATIHLQGAGVYGVTASRG KALNEGNIYLDGLVPTLDDENNITSTSYWQPSSLYLTSSGMVAGSTDADGDATAINTG NITVNNAGFGMMALNGGTAINQGVITLTADDGVTGQADELVGMAALNGGVVINDTSGV INIDADYGQAFLSDSSSYIINNGSINLNGSPMDDTDSHMGGTPTDKIWIQSLPGSGDS DTRTSDTGFFTAGTLANYGTETLNGDVDVNGGWLYNEAGASLTVNGTVTINGGANALA NYGTLDADAISTWHSLFNEADGSITTDLLTLNGDVTFYNNGDFTGSIAGTSYQQEIVN TGDMTVAEDGKSLVSGSFYFYNEEDATLTNSGSAVEGGENTIINLTRANDSLTQVNSG TITATNGYSAITTVNGSNDPKWIWNTATGVINGINPDAPLINLGRGYNFGNQGTINVQ GDNAVAISGGTSSYVINLVNSGTINVGTEQGKEDGTNGTGLIGIKGNGNATTINNTAD GVINVYADDSYAFGGKTKAIINNGEINLLCDSGCDIYAPGTTGTQNDHNGTADIVIPD ATTAPTEGSIPTPPADPNAPQQLSNYIVGTNADGSSGTLKANNLVIGDNVKVDTGFTS GTADTTVVVDNAFTGSNIQGADNITSTSVVWNAQGSQDADGNVDVTMTKNAYADVATD SSVSDVAQALDAGYTNNELYTSLNVGTTAELNSALKQVSGAQATTVFREARVLSNRFT MLADAAPQIKDGLAFNVVAKGDPRAELGNDTQYDMLALRQTLDLTASQNLTLEYGIAR LDGDGSKTAGDNGLTGGYSQFFGLKHSMAFDEGLAWNNSLRYDVHNLDSSRSVAYGDV NKIADSDMRQQYLEFRSEGAKTFTMMGDALKVTPYAGVKFRHTMEDGYKERSAGDFNL SMNSGNETAVDSIVGLKLDYAGKDGWSATATLEGGPNLSYSKSQRTASLQGAAGQSFG VDDGQKGGGVNGLATIGVKYSSNDTALHLDAYQWKEDGISDKGFMLNVKKTFR" misc_feature 3629184..3635033 /gene="bigA" /locus_tag="STM3478" /note="autotransporter adhesin BigA; Region: auto_BigA; NF033178" /db_xref="CDD:467981" misc_feature <3629421..>3629837 /gene="bigA" /locus_tag="STM3478" /note="hypothetical protein; Provisional; Region: PHA03169" /db_xref="CDD:223003" mobile_element complement(3635061..3635769) /mobile_element_type="insertion sequence:IS200_5" gene complement(3635168..3635632) /gene="tnpA_5" /locus_tag="STM3479" /db_xref="GeneID:1255002" CDS complement(3635168..3635626) /gene="tnpA_5" /locus_tag="STM3479" /note="transposase for insertion sequence element IS200 (SW:T200_SALTY)" /codon_start=1 /transl_table=11 /product="transposase for IS200" /protein_id="NP_462382.1" /db_xref="GeneID:1255002" /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKL CEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRN REFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK" misc_feature complement(3635243..3635614) /gene="tnpA_5" /locus_tag="STM3479" /note="Transposase IS200 like; Region: Y1_Tnp; cl00848" /db_xref="CDD:469954" regulatory complement(3635627..3635632) /regulatory_class="ribosome_binding_site" /gene="tnpA_5" /locus_tag="STM3479" /note="putative RBS for tnpA_5; RegulonDB:STMS1H003478" gene 3635928..3636110 /gene="yhfL" /locus_tag="STM3480" /db_xref="GeneID:1255003" regulatory 3635928..3635933 /regulatory_class="ribosome_binding_site" /gene="yhfL" /locus_tag="STM3480" /note="putative RBS for yhfL; RegulonDB:STMS1H003479" CDS 3635940..3636110 /gene="yhfL" /locus_tag="STM3480" /note="similar to E. coli orf, hypothetical protein (AAC76394.1); Blastp hit to AAC76394.1 (55 aa), 81% identity in aa 1 - 54" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_462383.1" /db_xref="GeneID:1255003" /translation="MFKFVKIAVVAGVLATLTACTGHIENKKNNCSYDYLLHPAISIS KIIGGCGPAADQ" misc_feature 3635940..3636101 /gene="yhfL" /locus_tag="STM3480" /note="Protein of unknown function (DUF4223); Region: DUF4223; pfam13978" /db_xref="CDD:433620" gene complement(3636255..3637272) /gene="trpS" /locus_tag="STM3481" /db_xref="GeneID:1255004" CDS complement(3636255..3637259) /gene="trpS" /locus_tag="STM3481" /EC_number="6.1.1.2" /note="similar to E. coli tryptophan tRNA synthetase (AAC76409.1); Blastp hit to AAC76409.1 (334 aa), 96% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="tryptophan tRNA synthetase" /protein_id="NP_462384.1" /db_xref="GeneID:1255004" /translation="MTKPIVFSGAQPSGELTIGNYMGALRQWVNMQDDYHCIYCIVDQ HAITVRQDAQQLRKATLDTLALYLACGIDPEKSTIFVQSHVPEHAQLGWALNCYTYFG ELSRMTQFKDKSARYAENINAGLFDYPVLMAADILLYQTNLVPVGEDQKQHLELSRDI AQRFNGLYGDIFKVPEPFIPKSGARVMSLLEPTKKMSKSDDNRNNVIGLLEDPKSVVK KIKRAVTDSDEPPVVRYDVKEKAGVSNLLDILSAVTGQSIPELEKQFEGKMYGHLKGE VAEAVSGMLSELQERYHRFRNDEAFLQKVMKDGAEKASARAAETLKAVYEAIGFVAKP " misc_feature complement(3636261..3637253) /gene="trpS" /locus_tag="STM3481" /note="tryptophanyl-tRNA synthetase; Reviewed; Region: PRK00927" /db_xref="CDD:234866" gene complement(3637252..3638020) /gene="gph" /locus_tag="STM3482" /db_xref="GeneID:1255005" CDS complement(3637252..3638010) /gene="gph" /locus_tag="STM3482" /EC_number="3.1.3.18" /note="similar to E. coli phosphoglycolate phosphatase (AAC76410.1); Blastp hit to AAC76410.1 (252 aa), 90% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="phosphoglycolate phosphatase" /protein_id="NP_462385.1" /db_xref="GeneID:1255005" /translation="MDKLQNIRGVAFDLDGTLVDSAPGLAAAVDMALYALELPVAGEE RVITWIGNGADVLMERALTWAREERATLRKTMGKPPVDEDIPAEEQVRILRKLFDRYY GEVAEEGTVLFPHVADTLGALHASGLSLGLVTNKPTPFVAPLLESLDIAKYFSVVIGG DDVQNKKPHPEPLLLVASRLGMMPEQMLFVGDSRNDIQAAKAAGCPSVGLTYGYNYGE AIALSEPDVIYDSFNDLLPALGLPHSDNQEIKND" misc_feature complement(3637279..3638004) /gene="gph" /locus_tag="STM3482" /note="N-acetylmuramic acid 6-phosphate phosphatase MupP; Region: PRK13222" /db_xref="CDD:237310" misc_feature complement(order(3637423..3637428,3637435..3637440, 3637510..3637512,3637606..3637611,3637960..3637974)) /gene="gph" /locus_tag="STM3482" /note="active site" /db_xref="CDD:319854" regulatory complement(3637267..3637272) /regulatory_class="ribosome_binding_site" /gene="gph" /locus_tag="STM3482" /note="putative RBS for trpS; RegulonDB:STMS1H003480" gene complement(3638003..3638692) /gene="rpe" /locus_tag="STM3483" /db_xref="GeneID:1255006" CDS complement(3638003..3638680) /gene="rpe" /locus_tag="STM3483" /EC_number="5.1.3.1" /note="similar to E. coli D-ribulose-5-phosphate 3-epimerase (AAC76411.1); Blastp hit to AAC76411.1 (225 aa), 97% identity in aa 1 - 224" /codon_start=1 /transl_table=11 /product="D-ribulose-5-phosphate 3-epimerase" /protein_id="NP_462386.1" /db_xref="GeneID:1255006" /translation="MKQYLIAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVP NLTIGPMVLKSLRQYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEASEHVDRT LQLIKEHGCKAGLVFNPATPLSYLDYVMDKLDVILLMSVNPGFGGQSFIPQTLDKLRE VRRRIDASGYDIRLEVDGGVKVNNIGEIAAAGADMFVAGSAIFDKPDYKKVIDEMRSE LAKVTHG" misc_feature complement(3638015..3638671) /gene="rpe" /locus_tag="STM3483" /note="Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]; Region: Rpe; COG0036" /db_xref="CDD:439806" regulatory complement(3638015..3638020) /regulatory_class="ribosome_binding_site" /gene="rpe" /locus_tag="STM3483" /note="putative RBS for gph; RegulonDB:STMS1H003481" regulatory complement(3638687..3638692) /regulatory_class="ribosome_binding_site" /gene="rpe" /locus_tag="STM3483" /note="putative RBS for rpe; RegulonDB:STMS1H003482" gene complement(3638698..3639534) /gene="dam" /locus_tag="STM3484" /db_xref="GeneID:1255007" CDS complement(3638698..3639534) /gene="dam" /locus_tag="STM3484" /EC_number="2.1.1.72" /note="DNA adenine methylase. (SW:DMA_SALTY)" /codon_start=1 /transl_table=11 /product="DNA adenine methylase" /protein_id="NP_462387.1" /db_xref="GeneID:1255007" /translation="MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLN TDFSRYILADINSDLISLYNIVKLRTDEYVQASRELFMPETNQAEVYYQLREEFNTCQ DPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKRPYFPEAELYHFAEKAQNAFF YCESYADSMARADKSSVVYCDPPYAPLSATANFTAYHTNSFSLTQQAHLAEIAENLVS NRIPVLISNHDTALTREWYQLAKLHVVKVRRSISSNGGTRKKVDELLALYQPGVATPA RK" misc_feature complement(3638722..3639534) /gene="dam" /locus_tag="STM3484" /note="adenine-specific DNA-methyltransferase; Region: PRK10904" /db_xref="CDD:182825" gene complement(3639715..3641004) /gene="damX" /locus_tag="STM3485" /db_xref="GeneID:1255008" CDS complement(3639715..3640992) /gene="damX" /locus_tag="STM3485" /note="similar to E. coli putative membrane protein; interferes with cell division (AAC76413.1); Blastp hit to AAC76413.1 (428 aa), 78% identity in aa 1 - 428" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="NP_462388.1" /db_xref="GeneID:1255008" /translation="MDEFKPEDELKPDPSDRRTGRSRQSSERDSEPQINFDDVDLDAD DRRPTRTRKARSEEPEVEEEYESDEDDTVDEERVERRPRKRKKAAHKPASRQYMMMGV GVLVLLLLIIGIGSALKAPSTSSSEPSASGEKSIDLSGNAADQANATQPAPGATSAEQ TAGNTSQDISLPPISSTPTQGQSPVVADGQQRVEVQGDLNNALTQNPEQMNNVAVNST LPTEPATVAPVRNGSTTRQAAVSEPAERHTTRPERKQAVIEPKKPQTTAKTTTAEPKK PVAPVKRTEPAAPAATPKATTTTAAPTATASAAPVQTAKPAQASTTPVAGGGKSAGNV GALKSAPSSHYTLQLSSSSNYDNLNGWAKKENLKNYVVYETTRNGQPWYVLVTGMYAS KEDAKRAVSTLPADVQAKNPWAKPLHQVQADLK" misc_feature complement(3639718..3640647) /gene="damX" /locus_tag="STM3485" /note="cell division protein DamX; Validated; Region: PRK10905" /db_xref="CDD:236792" regulatory complement(3640999..3641004) /regulatory_class="ribosome_binding_site" /gene="damX" /locus_tag="STM3485" /note="putative RBS for damX; RegulonDB:STMS1H003483" gene complement(3641090..3642195) /gene="aroB" /locus_tag="STM3486" /db_xref="GeneID:1255009" CDS complement(3641090..3642178) /gene="aroB" /locus_tag="STM3486" /EC_number="4.2.3.4" /note="3-dehydroquinate synthase. (SW:AROB_SALTY)" /codon_start=1 /transl_table=11 /product="dehydroquinate synthase" /protein_id="NP_462389.1" /db_xref="GeneID:1255009" /translation="MERITVTLGERSYPITIAAGLFNEPASFLPLKSGDQVMLVTNET LAPLYLDKVRGVLERAGVNVDSVILPDGEQYKSLTVLDTVFTALLKKPHGRDTTLVAL GGGVIGDLTGFAAASYQRGVRFIQVPTTLLSQVDSSVGGKTAVNHPLGKNMIGAFYQP ASVVVDLDCLKTLPARELTSGLAEVIKYGIILDADFFTWLEGNLDALLRLDGPAMAYC IRRCCELKAEVVAADEREAGLRALLNLGHTFGHAIEAEMGYGNWLHGEAVAAGIVMAA RASERLGQFSSADTQRIIALLERAGLPVNGPCEMSAQDYLPHMLRDKKVLAGELRLVL PLAIGKSEVRGGVSHEVVLSAIADCQQA" misc_feature complement(3641111..3642178) /gene="aroB" /locus_tag="STM3486" /note="3-dehydroquinate synthetase [Amino acid transport and metabolism]; Region: AroB; COG0337" /db_xref="CDD:440106" regulatory complement(3642190..3642195) /regulatory_class="ribosome_binding_site" /gene="aroB" /locus_tag="STM3486" /note="putative RBS for aroB; RegulonDB:STMS1H003484" gene complement(3642235..3642756) /gene="aroK" /locus_tag="STM3487" /db_xref="GeneID:1255010" CDS complement(3642235..3642756) /gene="aroK" /locus_tag="STM3487" /EC_number="2.7.1.71" /note="similar to E. coli shikimate kinase I (AAC76415.1); Blastp hit to AAC76415.1 (240 aa), 97% identity in aa 68 - 240" /codon_start=1 /transl_table=11 /product="shikimate kinase I" /protein_id="NP_462390.1" /db_xref="GeneID:1255010" /translation="MAEKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTG ADVGWVFDVEGEDGFRNREEKVINELTEKQGIVLATGGGSVKSRETRNRLSARGVVVY LETTIEKQLARTQRDKKRPLLQVEAPPREVLEALANERNPLYEEIADVTIRTDDQSAK VVANQIIHMLESN" misc_feature complement(3642238..3642756) /gene="aroK" /locus_tag="STM3487" /note="shikimate kinase AroK; Region: aroK; PRK05057" /db_xref="CDD:235335" misc_feature complement(order(3642397..3642399,3642418..3642420, 3642700..3642717)) /gene="aroK" /locus_tag="STM3487" /note="ADP binding site [chemical binding]; other site" /db_xref="CDD:238260" misc_feature complement(order(3642649..3642651,3642655..3642657, 3642703..3642705)) /gene="aroK" /locus_tag="STM3487" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:238260" misc_feature complement(order(3642337..3642339,3642508..3642516, 3642568..3642570,3642577..3642579,3642649..3642651)) /gene="aroK" /locus_tag="STM3487" /note="putative shikimate binding site [active]" /db_xref="CDD:238260" gene complement(3643221..3644472) /gene="hofQ" /locus_tag="STM3488" /db_xref="GeneID:1255011" CDS complement(3643221..3644459) /gene="hofQ" /locus_tag="STM3488" /note="possibly in biosynthesis of type IV pilin; similar to E. coli putative transport portein (AAC76416.1); Blastp hit to AAC76416.1 (412 aa), 86% identity in aa 1 - 412" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_462391.1" /db_xref="GeneID:1255011" /translation="MKRWIAIILIALMPAAQAGKAAKVTLVVDDVPVVQVLQTLAEQE RQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVLRQEGNILHVHSQAWQKEHSA RQDAERLRFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDN RAALAELEKWVSQMDLPVAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTT LSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIK QGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQA DGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDG KEDERRELVVFITPRLVATE" misc_feature complement(3643224..3644348) /gene="hofQ" /locus_tag="STM3488" /note="outer membrane porin HofQ; Provisional; Region: hofQ; PRK10560" /db_xref="CDD:182549" gene complement(3644374..3644791) /gene="yrfA" /locus_tag="STM3489" /db_xref="GeneID:1255012" CDS complement(3644374..3644775) /gene="yrfA" /locus_tag="STM3489" /note="similar to E. coli orf, hypothetical protein (AAC76417.1); Blastp hit to AAC76417.1 (147 aa), 61% identity in aa 14 - 146" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462392.1" /db_xref="GeneID:1255012" /translation="MKASRSVLLCFCLLMLTGMRDPFRPPEDRCRIAELSQWRYQGAV RKGERWTGILKDSQQKWRRVEEGQTLENGWTIVRLTAETLTLTTGKNCAPPQWRWLRQ GADNEAMDSHNTDSLDARRAGGKSGESDAGG" misc_feature complement(3644377..3644769) /gene="yrfA" /locus_tag="STM3489" /note="DNA utilization proteins HofP; Region: HofP; pfam10748" /db_xref="CDD:402399" regulatory complement(3644467..3644472) /regulatory_class="ribosome_binding_site" /gene="yrfA" /locus_tag="STM3489" /note="putative RBS for hofQ; RegulonDB:STMS1H003485" gene complement(3644765..3645252) /gene="yrfB" /locus_tag="STM3490" /db_xref="GeneID:1255013" CDS complement(3644765..3645238) /gene="yrfB" /locus_tag="STM3490" /note="similar to E. coli orf, hypothetical protein (AAC76418.1); Blastp hit to AAC76418.1 (146 aa), 46% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462393.1" /db_xref="GeneID:1255013" /translation="MNALFDIWYGMSRRGRVFYWCAGVLCLTLTVALSVGYPGWKTLD TQQTRLSQQREAARQQWRHLRRLSVAAEPLFGRTVENPRPFSPLDFQAPPLRLLHWQP SAQGGEMALKTSWDAVPSLFVRLAESEMSVSRFSLRKEGAELLMTLQLERLANEG" regulatory complement(3644786..3644791) /regulatory_class="ribosome_binding_site" /gene="yrfA" /locus_tag="STM3489" /note="putative RBS for yrfA; RegulonDB:STMS1H003486" gene complement(3645222..3645778) /gene="yrfC" /locus_tag="STM3491" /db_xref="GeneID:1255014" CDS complement(3645222..3645761) /gene="yrfC" /locus_tag="STM3491" /note="similar to E. coli orf, hypothetical protein (AAC76419.1); Blastp hit to AAC76419.1 (179 aa), 49% identity in aa 5 - 179" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462394.1" /db_xref="GeneID:1255014" /translation="MAHSVNLLPWRRQHYVARLRLWCVVWGASLLLIASLATIARLVF WQEGRINELLLTTENGRTTALAANIPQLQQRQRQQQARLQRQAQRELTQAWQSILTDL ANLLPEQAWLTSLNYQQETLELEGLARTFDALLTLETSLRHYVSFPLNRTGATRQDAQ GRWQFHYQLTRSAARERAL" misc_feature complement(3645234..3645761) /gene="yrfC" /locus_tag="STM3491" /note="Type IV pilus assembly protein PilN [Cell motility, Extracellular structures]; Region: PilN; COG3166" /db_xref="CDD:442399" regulatory complement(3645247..3645252) /regulatory_class="ribosome_binding_site" /gene="yrfB" /locus_tag="STM3490" /note="putative RBS for yrfB; RegulonDB:STMS1H003487" gene complement(3645761..3646556) /gene="yrfD" /locus_tag="STM3492" /db_xref="GeneID:1255015" CDS complement(3645761..3646540) /gene="yrfD" /locus_tag="STM3492" /note="similar to E. coli orf, hypothetical protein (AAC76420.1); Blastp hit to AAC76420.1 (268 aa), 65% identity in aa 10 - 266" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462395.1" /db_xref="GeneID:1255015" /translation="MAFKTWQIGLHIQQHEALAIAVIHGASGWSLQRWWRLPLMNAST AEGTIPDPQSLAHVLRPWSRELPLRHRIYLSFPANRTLQRAFPHPPMRLREREQVAWL SQTMARELDMDPDLLRFDFQDDALSPAFNVTAVQSKEISELLTLAQTLNVRIAAVTPD ACALQRLLPFIPSGRQCLVWRDESQWLWATRYAWGRKSAREAMTLHDLAATLSVVPEH ISLCAEGEFDPWHAVTVRQPPVPPDGYRFAIALGLAMGEIR" misc_feature complement(<3646025..3646519) /gene="yrfD" /locus_tag="STM3492" /note="ATPase-like domain of the ASKHA (Acetate and Sugar Kinases/Hsc70/Actin) superfamily; Region: ASKHA_ATPase-like; cl49607" /db_xref="CDD:483947" regulatory complement(3645773..3645778) /regulatory_class="ribosome_binding_site" /gene="yrfC" /locus_tag="STM3491" /note="putative RBS for yrfC; RegulonDB:STMS1H003488" regulatory complement(3646551..3646556) /regulatory_class="ribosome_binding_site" /gene="yrfD" /locus_tag="STM3492" /note="putative RBS for yrfD; RegulonDB:STMS1H003489" gene 3646637..3649213 /gene="mrcA" /locus_tag="STM3493" /db_xref="GeneID:1255016" CDS 3646637..3649213 /gene="mrcA" /locus_tag="STM3493" /note="similar to E. coli peptidoglycan synthetase; penicillin-binding protein 1A (AAC76421.1); Blastp hit to AAC76421.1 (858 aa), 92% identity in aa 1 - 858; transpeptidase of penicillin-binding protein 1a" /codon_start=1 /transl_table=11 /product="peptidoglycan synthetase" /protein_id="NP_462396.3" /db_xref="GeneID:1255016" /translation="MTLNGKSPVKFVKYLLILAVCCILLGAGSIYGLYRYIEPQLPDV ATLKDVRLQIPMQVYSADGELIAQYGEKRRIPVTLDQIPPEMINAFIATEDSRFYEHH GIDPVGIFRAASVALFSGHASQGASTITQQLARNFFLSPERTLMRKIKEAFLAIRIEQ LLNKNEILELYLNKIYLGYRAYGVGAAAQVYFGKTVDQLSLSEMAVIAGLPKAPSTFN PLYSMDRAIARRNVVLSRMLSEGYITQAQYDQARSEPIDANYHAPEIAFSAPYLSEMV RQEMYNRYGESAYEDGYRIYTTITRKVQQAAQQAVRNNVLDYDMRHGYRGPANVLWKV GETAWDSKKITDTLKALPTYGPLLPAVVTSANPQEATAALADGTSVSLHMEGMRWARP YRSDTQQGPTPRKVTDVVQTGQQIWVRQVDNDWWLAQVPEVNSALVSLNPQTGAVLAL VGGFDFNQSKFNRATQALRQVGSNIKPFLYTAAMDKGLTLASMLNDVPISRWDAGAGS DWRPKNSPPQYAGPIRLRQGLGQSKNVVMVRAMRAMGVDYAAEYLQRFGFPAQNIVHT ESLALGSASFTPMQVARGYAVMANGGFLIDPYFISKIENDQGGVIFEAKPKIACPECD IPVIYGNTQKSDVLENTNVEEVAVSQEQQNSAVPMPELEQANQALVAQNGTQEYAPHV INTPLAFLIKSALNTNIFGEPGWMGTGWRAARDLKRRDIGGKTGTTNSSKDAWFSGYG PGVVTSVWIGFDDHRRDLGRTTASGAIKDQISGYEGGAKSAQPAWDAYMKAVLEGVPE QPLTPPPGIVTVNIDRSTGQLASGGNSREEYFIEGTQPTQQAVHEVGTTIIDNGETHE LF" misc_feature 3646661..3649210 /gene="mrcA" /locus_tag="STM3493" /note="penicillin-binding protein 1a; Provisional; Region: mrcA; PRK11636" /db_xref="CDD:183248" gene complement(3649309..3649920) /gene="yrfE" /locus_tag="STM3494" /db_xref="GeneID:1255017" CDS complement(3649309..3649905) /gene="yrfE" /locus_tag="STM3494" /note="similar to E. coli orf, hypothetical protein (AAC76422.1); Blastp hit to AAC76422.1 (186 aa), 92% identity in aa 1 - 186" /codon_start=1 /transl_table=11 /product="putative NTP pyrophosphohydrolase" /protein_id="NP_462397.3" /db_xref="GeneID:1255017" /translation="MTTDYTAKILTMSKSLQKPTILKVETVAQSRLFNVESVDLEFSN GVRRVYERMRPSTREAVMIVPIVDEHLILIREYAVGTESYELGFSKGLIDPGETVFEA ANRELKEEVGFGAHNLTFLKKLSMAPSYFSSKMNIVVAEDLYPESLEGDEPEPLPQVR WPLAHLMDLLEDPDFNEARNVSALFLVREWLKAQGRIA" misc_feature complement(3649321..3649872) /gene="yrfE" /locus_tag="STM3494" /note="adenosine nucleotide hydrolase NudE; Provisional; Region: nudE; PRK11762" /db_xref="CDD:183303" regulatory complement(3649915..3649920) /regulatory_class="ribosome_binding_site" /gene="yrfE" /locus_tag="STM3494" /note="putative RBS for yrfE; RegulonDB:STMS1H003490" gene 3650184..3652327 /gene="yrfF" /locus_tag="STM3495" /db_xref="GeneID:1255018" regulatory 3650184..3650189 /regulatory_class="ribosome_binding_site" /gene="yrfF" /locus_tag="STM3495" /note="putative RBS for yrfF; RegulonDB:STMS1H003491" CDS 3650195..3652327 /gene="yrfF" /locus_tag="STM3495" /note="similar to E. coli putative dehydrogenase (AAC76423.1); Blastp hit to AAC76423.1 (711 aa), 83% identity in aa 1 - 710" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462398.1" /db_xref="GeneID:1255018" /translation="MSTILIFIAALLACSLLAIWRFRVKSRRGSLPWISAFQDAQTRK LLPEERSAVENYLDNLSQIQQVPGPTGASAAPISLTLNAESNSVVILTHSITRYGITT DDPNKWRYYLDSVEVHLPPFWEQYINDENNVELILTDTLPLVISLNGHTLQEYMQESR GYALQNTASTQASIRGEESEQIELLNIRQETHEEYALSRPAGLREALLIVASFLLFFF CLITPDVFVPWMIGGAILLLAAGLWGLFAPPSKSALREIHCLRGTPRRWGLFGENNQE QINNISLGIIDLIYPAHWQPYITQDLGQQTDIDIYLDRHVARQGRFLSLHDEVKNFPL QHWLRSTVIAIGSLLVLFMLLFWIPLDMPIKFTLSWMKGAQTIEATTVKQLEKAGVRV GDTLHLSGKGMCNIHSGATWSGQSNSPFMPFDCSQIIWNDAPALPLPESDLVNKAMAL SQAVNRQLHPKPEDDSRVSASLRSAIQKSGMVLLDDFGDIVLKTADLCAAEDECVRLK NALVNLGNSKDWNALVKRANAGKLDGVNVLLRPVSAESLENLVTTSTAPFISRETARA AQSLNSPAPGGFLIASDEGSELVDQTWPSTPLYDYPAQEQWSAFQRLAQTLMQTPFSA EGIVTSVYTDANGTQHISLHRIPDKSGWWRYLGTTLLMLAMIVSAVYNGIQAFRRYQR HRTRMADIQEYYESCLNPRLTVSPENLI" misc_feature 3650249..3652309 /gene="yrfF" /locus_tag="STM3495" /note="Intracellular growth attenuator protein IgaA; Region: IgaA; pfam07095" /db_xref="CDD:429290" gene 3652380..3653060 /gene="yrfG" /locus_tag="STM3496" /db_xref="GeneID:1255019" regulatory 3652380..3652385 /regulatory_class="ribosome_binding_site" /gene="yrfG" /locus_tag="STM3496" /note="putative RBS for yrfG; RegulonDB:STMS1H003492" CDS 3652392..3653060 /gene="yrfG" /locus_tag="STM3496" /note="similar to E. coli putative phosphatase (AAC76424.1); Blastp hit to AAC76424.1 (237 aa), 85% identity in aa 16 - 237" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_462399.1" /db_xref="GeneID:1255019" /translation="MHIDIDWQNVDTVLLDMDGTLLDLAFDNYFWQKLVPETYGAQQG ISPQDAQEYIRQQYHAVQHTLNWYCLDYWSERLGLDICAMTTAQGPRAVLRDDTVPFL NALKASGKRRILLTNAHPHNLAVKLEHTGLASHLDLLLSTHTFGYPKEDQRLWRAVTE ETGISAEKTLFIDDSEPILDAAARFGIRYCLGVTNPDSGLAEKHYTRHPSLNDYRRLI PSLM" misc_feature 3652392..3653057 /gene="yrfG" /locus_tag="STM3496" /note="GMP/IMP nucleotidase; Provisional; Region: PRK14988" /db_xref="CDD:237882" misc_feature order(3652677..3652685,3652737..3652742,3652848..3652850, 3652908..3652913,3652920..3652925) /gene="yrfG" /locus_tag="STM3496" /note="active site" /db_xref="CDD:319763" gene 3653060..3653472 /gene="yrfH" /locus_tag="STM3497" /db_xref="GeneID:1255020" regulatory 3653060..3653065 /regulatory_class="ribosome_binding_site" /gene="yrfH" /locus_tag="STM3497" /note="putative RBS for yrfH; RegulonDB:STMS1H003493" CDS 3653071..3653472 /gene="yrfH" /locus_tag="STM3497" /note="predicted small RNA-binding protein; similar to E. coli orf, hypothetical protein (AAC76425.1); Blastp hit to AAC76425.1 (133 aa), 95% identity in aa 1 - 133" /codon_start=1 /transl_table=11 /product="heat shock protein" /protein_id="NP_462400.1" /db_xref="GeneID:1255020" /translation="MKEKSSVEVRLDKWLWAARFYKTRAMAREMIEGGKVHYNGQRSK PSKIVELNATLTLRQGNDERTVIVKAITEQRRPASEAVALYEETAESVEKREKMAQAR KLNALTMPHPDRRPDKKERRDLLRFKHGDSE" misc_feature 3653071..3653469 /gene="yrfH" /locus_tag="STM3497" /note="ribosome-associated heat shock protein Hsp15; Provisional; Region: PRK10348" /db_xref="CDD:182397" misc_feature order(3653098..3653100,3653134..3653139,3653143..3653148, 3653152..3653157,3653164..3653169,3653173..3653175, 3653194..3653196,3653197..3653214,3653218..3653220) /gene="yrfH" /locus_tag="STM3497" /note="RNA binding surface [nucleotide binding]; other site" /db_xref="CDD:238095" gene 3653491..3654375 /gene="yrfI" /locus_tag="STM3498" /db_xref="GeneID:1255021" CDS 3653491..3654375 /gene="yrfI" /locus_tag="STM3498" /note="redox regulated chaparone; similar to E. coli orf, hypothetical protein (AAC76426.1); Blastp hit to AAC76426.1 (294 aa), 92% identity in aa 1 - 294" /codon_start=1 /transl_table=11 /product="heat shock protein 33" /protein_id="NP_462401.3" /db_xref="GeneID:1255021" /translation="MIMPQHDQLHRYLFENFAVRGELVTVSETLQQILDNHNYPQPVK TVLAELLVATSLLTATLKFAGDITVQLQGDGPLSLAVINGNNQQQMRGVARVQGDIPD NADLKTLVGNGYLVITITPEEGERYQGVVGLEGDTLAACLEDYFLRSEQLPTRLFIRT GDVDGKPAAGGMLLQVMPAQNAQAEDFDHLAMLTETIKSEELLTLPANDVLWRLYHEE EVTLYDPQNVEFKCTCSRERCAGALKTLPDEEVDSILAEEGEIDMHCDYCGNHYLFNA MDIAEIRNNASPADPQVH" misc_feature 3653503..3654351 /gene="yrfI" /locus_tag="STM3498" /note="Hsp33 family molecular chaperone HslO; Region: hslO; PRK00114" /db_xref="CDD:234643" gene complement(3654485..3656206) /gene="yhgE" /locus_tag="STM3499" /db_xref="GeneID:1255022" CDS complement(3654485..3656194) /gene="yhgE" /locus_tag="STM3499" /note="similar to E. coli putative transport (AAC76427.1); Blastp hit to AAC76427.1 (574 aa), 56% identity in aa 1 - 574" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462402.1" /db_xref="GeneID:1255022" /translation="MESVALSHTTRWGMLLTGLLQGVLCYLLMAWLVPQNSDWLFYGM PATIALSSMLLLTVVSFKQRALWGWLGLIFVVVLAMSGWLKWQVETVEKWRLAELLWL YGLRLVLMAMLVLPWMQYQLHSQTGSARYPQFYLRLWHNVLTLFIVLVANGLFWLVLL LWSALFRLVGIRFFSTLFFETEAFIYVTIGLITALAVILARTQSRLVAAVQKLLTLIA TGLLPVVSLLALLFIVTLPFTGLEAISARVSAAGLLSTLTLMLLLLVAIVNEPQKRVL PYPRVLRGMISASLCVAPIYMLLAGWALWVRIQQYGWTPDRLYGALTVSVLLVWSFGY LIGLLRRGRDPGEWQGKVILSVSLLTLVILLLLASPVLDVWRISVNSHMARYHSGKIT ADQISLYMLDHSGKPGQEALKSLRDDEAFTQNRKRNRELMTFLQRNKVSPTADDLARV VMIAPGSQKPDAAFWAFVKEQSYSDDSCLEPDACVLVSQDLNGDGQPEQVLYNFIVAE SQVYGLKEGKWTQKAFARLPDGFSKTQLLHAIAGHRLDSAPKAWRDIIVDGQRLDVDY YNE" misc_feature complement(3655025..3656047) /gene="yhgE" /locus_tag="STM3499" /note="Domain of unknown function (DUF4153); Region: DUF4153; pfam13687" /db_xref="CDD:463956" regulatory complement(3656201..3656206) /regulatory_class="ribosome_binding_site" /gene="yhgE" /locus_tag="STM3499" /note="putative RBS for yhgE; RegulonDB:STMS1H003494" gene 3656520..3658193 /gene="pckA" /locus_tag="STM3500" /db_xref="GeneID:1255023" regulatory 3656520..3656528 /regulatory_class="minus_35_signal" /gene="pckA" /locus_tag="STM3500" /note="putative -35_signal for pckA; RegulonDB:STMLTH004596" regulatory 3656544..3656552 /regulatory_class="minus_10_signal" /gene="pckA" /locus_tag="STM3500" /note="putative -10_signal for pckA; RegulonDB:STMLTH004596" regulatory 3656561..3656566 /regulatory_class="ribosome_binding_site" /gene="pckA" /locus_tag="STM3500" /note="putative RBS for pckA; RegulonDB:STMS1H003495" CDS 3656574..3658193 /gene="pckA" /locus_tag="STM3500" /EC_number="4.1.1.49" /note="phosphoenolpyruvate carboxykinase [ATP]. (SW:PPCK_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate carboxykinase" /protein_id="NP_462403.2" /db_xref="GeneID:1255023" /translation="MRVNNLTPQDLKAYGINDVQDIVYNPSYDTLYQEELNPGLEGYE RGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTLWWSDKGKGKNDNKPLSQETWQ HLKGLVTHQLSGKRLFIVDAFCGANADTRLSVRFITEVAWQAHFVKNMFIRPTDEELV GFKPDFIVMNGAKCTNPQWKEQGLNSENFVAFNLTERIQLIGGTWYGGEMKKGMFSVM NYLLPLKGIASMHCSANVGEKGDVAVFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDDG VFNFEGGCYAKTIKLSKEAEPEIYHAIRRDALLENVTVREDGTVDFDDGSKTENTRVS YPIYHIDNIVKPVSKAGHATKVIFLTADAFGVLPPVSRLTANQTQYHFLSGFTAKLAG TERGVTEPTPTFSACFGAAFLTLHPTQYAEVLVKRMQAAGAQAYLVNTGWNGTGKRIS IKDTRAIIDAILNGSLDNAETFRLPLFDLAIPTELPGVDTHILDPRNTYASPEQWQEK ATALAKLFIENFEKYTDTPAGEALVSAGPKL" misc_feature 3656583..3658190 /gene="pckA" /locus_tag="STM3500" /note="Phosphoenolpyruvate carboxykinase, ATP-dependent [Energy production and conversion]; Region: PckA; COG1866" /db_xref="CDD:441471" gene complement(3658268..3659637) /gene="envZ" /locus_tag="STM3501" /db_xref="GeneID:1255024" CDS complement(3658268..3659620) /gene="envZ" /locus_tag="STM3501" /EC_number="2.7.3.-" /note="osmolarity sensor protein ENVZ. (SW:ENVZ_SALTY)" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory system with OmpR" /protein_id="NP_462404.1" /db_xref="GeneID:1255024" /translation="MRRMRFSPRSSFARTLLLIVTLLFVSLVTTYLVVLNFAILPSLQ QFNKVLAYEVRMLMTDKLQLEDGTQLVVPPAFRREIYRELGISLYTNEAAEEAGLRWA QHYEFLSHQMAQQLGGPTEVRVEVNKSSPVVWLKTWLSPNIWVRVPLTEIHQGDFSPL FRYTLAIMLLAIGGAWLFIRIQNRPLVDLEHAALQVGKGIIPPPLREYGASEVRSVTR AFNHMAAGVKQLADDRTLLMAGVSHDLRTPLTRIRLATEMMGEEDGYLAESINKDIEE CNAIIEQFIDYLRTGQEMPMEMADLNSVLGEVIAAESGYEREINTALQAGSIQVKMHP LSIKRAVANMVVNAARYGNGWIKVSSGTESHRAWFQVEDDGPGIKPEQRKHLFQPFVR GDSARSTSGTGLGLAIVQRIIDNHNGMLEIGTSERGGLSIRAWLPVPVARVQGTTKEA " misc_feature complement(3658304..3659611) /gene="envZ" /locus_tag="STM3501" /note="osmolarity sensor protein; Provisional; Region: envZ; PRK09467" /db_xref="CDD:236531" gene complement(3659617..3660468) /gene="ompR" /locus_tag="STM3502" /db_xref="GeneID:1255025" CDS complement(3659617..3660336) /gene="ompR" /locus_tag="STM3502" /note="affecting transcription of ompC and ompF (OmpR family); transcriptional regulatory protein OMPR. (SW:OMPR_SALTY)" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with EnvZ" /protein_id="NP_462405.1" /db_xref="GeneID:1255025" /translation="MQENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL TRESFHLMVLDLMLPGEDGLSICRRLRSQSNPMPIIMVTAKGEEVDRIVGLEIGADDY IPKPFNPRELLARIRAVLRRQANELPGAPSQEEAVIAFGKFKLNLGTREMFREDEPMP LTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVEEDPAH PRYIQTVWGLGYVFVPDGSKA" misc_feature complement(3659623..3660336) /gene="ompR" /locus_tag="STM3502" /note="osmolarity response regulator; Provisional; Region: ompR; PRK09468" /db_xref="CDD:181883" regulatory complement(3659632..3659637) /regulatory_class="ribosome_binding_site" /gene="ompR" /locus_tag="STM3502" /note="putative RBS for envZ; RegulonDB:STMS1H003496" regulatory complement(3660346..3660351) /regulatory_class="ribosome_binding_site" /gene="ompR" /locus_tag="STM3502" /note="putative RBS for ompR; RegulonDB:STMS1H003497" regulatory complement(3660441..3660449) /regulatory_class="minus_10_signal" /gene="ompR" /locus_tag="STM3502" /note="putative -10_signal for ompR; RegulonDB:STMLTH004597" regulatory complement(3660460..3660468) /regulatory_class="minus_35_signal" /gene="ompR" /locus_tag="STM3502" /note="putative -35_signal for ompR; RegulonDB:STMLTH004597" gene 3660546..3661035 /gene="greB" /locus_tag="STM3503" /db_xref="GeneID:1255026" regulatory 3660546..3660551 /regulatory_class="ribosome_binding_site" /gene="greB" /locus_tag="STM3503" /note="putative RBS for greB; RegulonDB:STMS1H003498" CDS 3660562..3661035 /gene="greB" /locus_tag="STM3503" /note="similar to E. coli transcription elongation factor and transcript cleavage (AAC76431.1); Blastp hit to AAC76431.1 (170 aa), 94% identity in aa 13 - 169" /codon_start=1 /transl_table=11 /product="transcription elongation factor and transcript cleavage" /protein_id="NP_462406.1" /db_xref="GeneID:1255026" /translation="MKTPLITREGYETLKQELNYLWREERPEVTKKVTWAASLGDRSE NADYQYNKKRLREIDRRVRYLTKCMENLKIVDYSPQQEGKVFFGAWVEIENDDGDRLK FRIVGYDEIFGRKDYISIDSPMARALLKKEVGDLAVVNTPVGEANWYVNAIEYVK" misc_feature 3660562..3661029 /gene="greB" /locus_tag="STM3503" /note="transcription elongation factor GreB; Reviewed; Region: greB; PRK01885" /db_xref="CDD:179345" gene 3661120..3663464 /gene="yhgF" /locus_tag="STM3504" /db_xref="GeneID:1255027" regulatory 3661120..3661125 /regulatory_class="ribosome_binding_site" /gene="yhgF" /locus_tag="STM3504" /note="putative RBS for yhgF; RegulonDB:STMS1H003499" CDS 3661137..3663464 /gene="yhgF" /locus_tag="STM3504" /note="similar to E. coli orf, hypothetical protein (AAC76432.1); Blastp hit to AAC76432.1 (740 aa), 94% identity in aa 1 - 740" /codon_start=1 /transl_table=11 /product="putative RNase R" /protein_id="NP_462407.3" /db_xref="GeneID:1255027" /translation="MNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEIT GGLDDTQLRNLETRLGYLRELEDRRQAILKSISEQGKLTDELAGAINATLSKTELEDL YLPYKPKRRTRGQIAIEAGLEPLADLLWNEPSHDPDVEAAKYIDGDKGVADTKAALDG ARYILMERFAEDAALLAKVRDYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVP SHRALAMFRGRNEGILQLSLNADPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKG VVSWTWRIKVLMHLETELMGTVRERAEDEAINVFARNLHDLLMAAPAGLRATMGLDPG LRTGVKVAVVDGTGKLVATDTIYPHTGQAAKAATVIAALCEKYHVELVAIGNGTASRE TERFYLDVQKQFPNVTAQKVIVSEAGASVYSASELAAQEFPDLDVSLRGAVSIARRLQ DPLAELVKIDPKSIGVGQYQHDVSQTQLARKLDAVVEDCVNAVGVDLNTASVPLLTRV AGLTRMMAQNIVAWRDENGQFQNRQQLLKVSRLGPKAFEQCAGFLRINHGDNPLDAST VHPEAYPVVERILAATQQALKDLMGNSNELRHLKAADFTDDKFGVPTVSDIIKELEKP GRDPRPEFKTAQFADGVETMNDLLPGMILEGAVTNVTNFGAFVDIGVHQDGLVHISSL STKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTMRLDEQPGETAARRGGGADRAQG NRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR" misc_feature 3661137..3663314 /gene="yhgF" /locus_tag="STM3504" /note="Transcriptional accessory protein Tex/SPT6 [Transcription]; Region: Tex; COG2183" /db_xref="CDD:441786" gene 3663893..3664128 /gene="feoA" /locus_tag="STM3505" /db_xref="GeneID:1255028" regulatory 3663893..3663898 /regulatory_class="ribosome_binding_site" /gene="feoA" /locus_tag="STM3505" /note="putative RBS for feoA; RegulonDB:STMS1H003500" CDS 3663901..3664128 /gene="feoA" /locus_tag="STM3505" /note="similar to E. coli ferrous iron transport protein A (AAC76433.1); Blastp hit to AAC76433.1 (75 aa), 96% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="ferrous iron transport protein A" /protein_id="NP_462408.1" /db_xref="GeneID:1255028" /translation="MQFTPDTAWKITGFAREISPAYRQKLLSLGMLPGSSFNVVRVAP LGDPIHIETRRVSLVLRKKDLALIEVEAVSC" misc_feature 3663901..3664122 /gene="feoA" /locus_tag="STM3505" /note="ferrous iron transporter A; Region: feoA; PRK09555" /db_xref="CDD:181949" gene 3664147..3666465 /gene="feoB" /locus_tag="STM3506" /db_xref="GeneID:1255029" CDS 3664147..3666465 /gene="feoB" /locus_tag="STM3506" /note="FeoB family; ferrous iron transport protein B. (SW:FEOB_SALTY)" /codon_start=1 /transl_table=11 /product="ferrous iron transport protein B" /protein_id="NP_462409.1" /db_xref="GeneID:1255029" /translation="MKKLTIGLIGNPNSGKTTLFNQLTGARQRVGNWAGVTVERKEGQ FATTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNL YLTLQLLELGIPCIVALNMLDIAEKQQVRIDVDALSTRLGCPVVPLVSTRGRGIEALK LAIDRHNANDNVELVHYAQPLLREADFLADAMAQEMPLQQRRWLGLQMLEGDIYSRAY AGEAAQNLDTSLARLKDEMDDPALHIADARYQCIAAICDVVSNTLTAEPSRFTRAVDK IILNRFLGLPIFLFVMYLMFLLAINIGGALQPLFDAGSVAIFIHGIQWIGYTLHFPDW LTIFLAQGLGGGINTVLPLVPQIGMMYLFLSFLEDSGYMARAAFVMDRLMQALGLPGK SFVPLIVGFGCNVPSVMGARTLDAPRERLMTIMMAPFMSCGARLAIFAVFAAAFFGQN GALAVFSLYVLGIVMAVLTGLMLKHTIMRGEASPFVMELPVYHVPHIKSLIIQTWQRL KGFVLRAGKVIIIVSIFLSAFNSFSLSGKIVDNINDSALASVSRVITPVFKPIGVHED NWQATVGLFTGAMAKEVVVGTLNTLYTAENIQDEAFNPADFHLGDELLGAVDDTWQSL KDTFSLSVLANPIEASKGDGEMATGAMGVMDQKFGSAAAAYSYLIFVLLYVPCISVMG AIARESSRGWMGFSILWGLNIAYSLATLFYQVTSFSQHPTYSLICILAVIVFNVVVLS LLRRARSRVDIELLATRKNVSSCCSGTAGNCH" misc_feature 3664147..3666462 /gene="feoB" /locus_tag="STM3506" /note="Fe(2+) transporter permease subunit FeoB; Region: feoB; PRK09554" /db_xref="CDD:236563" misc_feature 3664174..3664197 /gene="feoB" /locus_tag="STM3506" /note="G1 box; other site" /db_xref="CDD:206667" misc_feature order(3664183..3664185,3664189..3664200,3664504..3664509, 3664513..3664515,3664591..3664599) /gene="feoB" /locus_tag="STM3506" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206667" misc_feature 3664252..3664266 /gene="feoB" /locus_tag="STM3506" /note="Switch I region; other site" /db_xref="CDD:206667" misc_feature 3664255..3664257 /gene="feoB" /locus_tag="STM3506" /note="G2 box; other site" /db_xref="CDD:206667" misc_feature 3664312..3664323 /gene="feoB" /locus_tag="STM3506" /note="G3 box; other site" /db_xref="CDD:206667" misc_feature order(3664321..3664347,3664360..3664389,3664399..3664404) /gene="feoB" /locus_tag="STM3506" /note="Switch II region; other site" /db_xref="CDD:206667" misc_feature 3664504..3664515 /gene="feoB" /locus_tag="STM3506" /note="G4 box; other site" /db_xref="CDD:206667" misc_feature 3664591..3664599 /gene="feoB" /locus_tag="STM3506" /note="G5 box; other site" /db_xref="CDD:206667" gene 3666464..3666714 /gene="yhgG" /locus_tag="STM3507" /db_xref="GeneID:1255030" regulatory 3666464..3666469 /regulatory_class="ribosome_binding_site" /gene="yhgG" /locus_tag="STM3507" /note="putative RBS for yhgG; RegulonDB:STMS1H003501" CDS 3666478..3666714 /gene="yhgG" /locus_tag="STM3507" /note="similar to E. coli orf, hypothetical protein (AAC76435.1); Blastp hit to AAC76435.1 (78 aa), 89% identity in aa 1 - 78" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462410.1" /db_xref="GeneID:1255030" /translation="MASLIQVRDLLALRGRMEATQISHTLHAPQPMIDAMLNQLEIMG KAVRIPEEPDGCLSGSCKSCPEGKACLREWWALR" misc_feature 3666478..3666711 /gene="yhgG" /locus_tag="STM3507" /note="[Fe-S]-dependent transcriptional repressor FeoC; Region: PRK15431" /db_xref="CDD:185329" gene 3666939..3667863 /locus_tag="STM3508" /db_xref="GeneID:1255031" regulatory 3666939..3666944 /regulatory_class="ribosome_binding_site" /locus_tag="STM3508" /note="putative RBS for STM3508; RegulonDB:STMS1H003502" CDS 3666949..3667863 /locus_tag="STM3508" /note="similar to E. coli orf, hypothetical protein (AAC75365.1); Blastp hit to AAC75365.1 (296 aa), 67% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462411.1" /db_xref="GeneID:1255031" /translation="MATSTTSTPHDAVFKQFLCHPDTARDFLEIHLPSTLRQICNLNT LRLESGSFIEEDLRPHYSDILWSLETSEGEGYIYVVIEHQSTPDAHMAFRLMRYAMAA MQRHLEAGHKTLPLVVPMLFYHGNRSPYPFSLCWLDEFADPVMARKLYATAFPLVDIT VVPDDEIMRHRRVALLELIQKHIRQRDLMGLVEQLVALLVKGYANDTQLQSLFNYMMH TGDAARFNTFIRQVAMRIPQHKEKIMTIADRLRQEGHRNGLQQGKQEGQRLAALRIAR SMLNDGFDRDTVLRVTGLAPADLASENH" misc_feature 3666949..3667860 /locus_tag="STM3508" /note="ISNCY family transposase; Region: PRK09956" /db_xref="CDD:182167" gene complement(3667899..3668683) /gene="bioH" /locus_tag="STM3509" /db_xref="GeneID:1255032" CDS complement(3667899..3668669) /gene="bioH" /locus_tag="STM3509" /note="biotin biosynthesis; reaction prior to pimeloyl CoA; similar to E. coli biotin biosynthesis; reaction prior to pimeloyl CoA (AAC76437.1); Blastp hit to AAC76437.1 (256 aa), 81% identity in aa 1 - 253" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_462412.1" /db_xref="GeneID:1255032" /translation="MNDIWWQTYGEGNCHLVLLHGWGLNAEVWHCIREELGSHFTLHL VDLPGYGRSSGFGAMTLEEMTAQVAKNAPDQAIWLGWSLGGLVASQMALTHPERVQAL VTVASSPCFSAREGWPGIKPEILGGFQQQLSDDFQRTVERFLALQTLGTETARQDART LKSVVLAQPMPDVEVLNGGLEILKTVDLREALKNVNMPFLRLYGYLDGLVPRKIVPLL DTLWPHSTSQIMAKAAHAPFISHPAAFCQALMTLKSSL" misc_feature complement(3667902..3668669) /gene="bioH" /locus_tag="STM3509" /note="pimeloyl-ACP methyl ester esterase BioH; Region: PRK10349" /db_xref="CDD:137836" regulatory complement(3668678..3668683) /regulatory_class="ribosome_binding_site" /gene="bioH" /locus_tag="STM3509" /note="putative RBS for bioH; RegulonDB:STMS1H003503" gene 3668695..3669390 /gene="yhgH" /locus_tag="STM3510" /db_xref="GeneID:1255033" regulatory 3668695..3668700 /regulatory_class="ribosome_binding_site" /gene="yhgH" /locus_tag="STM3510" /note="putative RBS for yhgH; RegulonDB:STMS1H003504" CDS 3668707..3669390 /gene="yhgH" /locus_tag="STM3510" /note="similar to E. coli orf, hypothetical protein (AAC76438.1); Blastp hit to AAC76438.1 (243 aa), 85% identity in aa 17 - 243" /codon_start=1 /transl_table=11 /product="putative amidophosphoribosyltransferase" /protein_id="NP_462413.1" /db_xref="GeneID:1255033" /translation="MLTVPGLCWLCRMPLALSHWGICSVCARAVRQRVSLCPQCGLPA AHPSLPCGRCLQKPPPWQRLVSVSDYTPPLSLLVHQLKFTRRSEIAAALARLLLQEVL MARRSTGLQLPDRIVSVPLWSRRHWRRGFNQSDLLCQPLAHWLGCAWDSQTITRVRAT ATQHHLSARLRKRNLKNAFRLELPVQGLHMVIVDDVVTTGSTVAEIAQLLLRNGAATV QVWCLCRTL" misc_feature 3668707..3669387 /gene="yhgH" /locus_tag="STM3510" /note="DNA utilization protein GntX; Provisional; Region: PRK11595" /db_xref="CDD:183221" gene 3669437..3670024 /gene="yhgI" /locus_tag="STM3511" /db_xref="GeneID:1255034" regulatory 3669437..3669442 /regulatory_class="ribosome_binding_site" /gene="yhgI" /locus_tag="STM3511" /note="putative RBS for yhgI; RegulonDB:STMS1H003505" CDS 3669449..3670024 /gene="yhgI" /locus_tag="STM3511" /note="similar to E. coli orf, hypothetical protein (AAC76439.1); Blastp hit to AAC76439.1 (191 aa), 98% identity in aa 1 - 191" /codon_start=1 /transl_table=11 /product="putative thioredoxin-like proteins and domain protein" /protein_id="NP_462414.1" /db_xref="GeneID:1255034" /translation="MIRISDAAQAHFAKLLANQEEGTQIRVFVINPGTPNAECGVSYC PPDAVEATDTALKFDLLTAYVDELSAPYLEDAEIDFVTDQLGSQLTLKAPNAKMRKVA DDAPLMERVEYALQSQINPQLAGHGGRVSLMEITDEGYAILQFGGGCNGCSMVDVTLK EGIEKQLLNEFPELKGVRDLTEHQRGEHSYY" misc_feature 3669449..3670021 /gene="yhgI" /locus_tag="STM3511" /note="iron-sulfur cluster biogenesis protein NfuA; Region: PRK11190" /db_xref="CDD:183027" protein_bind 3670168..3670185 /note="putative binding site for CRP, RegulonDB: STMS1H000104" /bound_moiety="CRP" gene 3670225..3671717 /gene="gntT" /locus_tag="STM3512" /db_xref="GeneID:1255035" regulatory 3670225..3670233 /regulatory_class="minus_35_signal" /gene="gntT" /locus_tag="STM3512" /note="putative -35_signal for gntT; RegulonDB:STMLTH004598" regulatory 3670252..3670260 /regulatory_class="minus_10_signal" /gene="gntT" /locus_tag="STM3512" /note="putative -10_signal for gntT; RegulonDB:STMLTH004598" regulatory 3670391..3670396 /regulatory_class="ribosome_binding_site" /gene="gntT" /locus_tag="STM3512" /note="putative RBS for gntT; RegulonDB:STMS1H003506" CDS 3670401..3671717 /gene="gntT" /locus_tag="STM3512" /note="GntP family; similar to E. coli high-affinity transport of gluconate / gluconate permease (AAC76440.1); Blastp hit to AAC76440.1 (437 aa), 96% identity in aa 1 - 437" /codon_start=1 /transl_table=11 /product="high-affinity gluconate permease in GNT I system" /protein_id="NP_462415.1" /db_xref="GeneID:1255035" /translation="MPLVIVAIGVILLLLLMIRFKMNGFIALVLVALAVGLMQGMPLD KVIGSIKAGVGGTLGSLALIMGFGAMLGKMLADCGGAQRIATTLIAKFGKKHIQWAVV LTGFTVGFALFYEVGFVLMLPLVFTIAAAANIPLLYVGVPMAAALSVTHGFLPPHPGP TAIATIFHADMGKTLLFGTILAIPTVILAGPVYARFLKGIDKPIPEGLYSAKTFTEEE MPGFGVSVWTSLVPVILMAMRAIAEMILPKGHAFLPVAEFLGDPVMATLIAVLIAMFT FGLNRGRSMDQINDTLVSSIKIIAMMLLIIGGGGAFKQVLVDSGVDKYIASMMHETNV SPLLMAWSIAAVLRIALGSATVAAITAGGIAAPLIATTGVSPELMVIAVGSGSVIFSH VNDPGFWLFKEYFNLTIGETIKSWSMLETIISVCGLIGCLLLGMVV" misc_feature 3670401..3671714 /gene="gntT" /locus_tag="STM3512" /note="gluconate transporter; Region: PRK14984" /db_xref="CDD:237880" gene complement(3671836..3673925) /gene="malQ" /locus_tag="STM3513" /db_xref="GeneID:1255036" CDS complement(3671836..3673914) /gene="malQ" /locus_tag="STM3513" /EC_number="2.4.1.25" /note="similar to E. coli 4-alpha-glucanotransferase (amylomaltase) (AAC76441.1); Blastp hit to AAC76441.1 (694 aa), 85% identity in aa 1 - 694" /codon_start=1 /transl_table=11 /product="4-alpha-glucanotransferase (" /protein_id="NP_462416.1" /db_xref="GeneID:1255036" /translation="MENKRLDSAALAAGISPSYINAHGKPQSIGAETKRRLLAAMHGT TTGPQAVVPNVKVYTAGKKMALPVEGRGEFAWLLTTEEGVHYKGRVTGGKKLNLPATL PEGYHTLTLTQDEQRTHCRIIVAPPRCYEPQALLEGKKLWGACVQLYTLRSEKNWGIG DFGDLKSMLVDVATRGGAFIGLNPIHALYPANPESASPYSPSSRRWLNVIYIDVNAVE DFRLSEEAQAWWQMPATQQKLRQARDAQWVDYATVTALKITALRMAWTRFAARDDAQM AEFRHFIAREGESLYWQAAFDALHAYQVKEDEQRWGWPAWPEAYQSVEYPAVKQFCEA HREEVEFYLWLQWLAWRQFAACWDTCQSFKLPIGLYRDLAVGVAEGGAETWCDRELYC LKASVGAPPDILGPLGQNWGLPPMDPHIIVARAYEPFIDLLRANMQNCGALRIDHVMS LLRLWWIPYGETADQGAYVHYPVDDLLSILALESQRHRCMVIGEDLGTVPVEIVGKLR DSGVYSYKVLWFENDLEKNFRAPGAYPQQSMAVASTHDLPTLRGYWECGDLTLGKALG LYPDEVILRGLYEDRERAKQGLLDALHKYGCLPKRAGHKASLMSMTPTLNRGLQRYIA DSNSGLLGLQPEDWLDMADPVNVPGTSDQYKNWRRKLTATLEQMFADEGVNKLIKDLD KRRKAAAKKK" misc_feature complement(3671869..3673914) /gene="malQ" /locus_tag="STM3513" /note="4-alpha-glucanotransferase; Provisional; Region: malQ; PRK11052" /db_xref="CDD:236831" regulatory complement(3673920..3673925) /regulatory_class="ribosome_binding_site" /gene="malQ" /locus_tag="STM3513" /note="putative RBS for malQ; RegulonDB:STMS1H003507" gene complement(3673924..3676406) /gene="malP" /locus_tag="STM3514" /db_xref="GeneID:1255037" CDS complement(3673924..3676317) /gene="malP" /locus_tag="STM3514" /EC_number="2.4.1.1" /note="similar to E. coli maltodextrin phosphorylase (AAC76442.1); Blastp hit to AAC76442.1 (797 aa), 90% identity in aa 1 - 797" /codon_start=1 /transl_table=11 /product="maltodextrin phosphorylase" /protein_id="NP_462417.1" /db_xref="GeneID:1255037" /translation="MSQPTFNKDQFQAALTRQWQRFGLLSASDMTPRQWWQAVSGALA ELLSAQPVAQPTKGQRHVNYISMEFLIGRLTGNNLLNLGWYQDVSDVLKAHDINLTDL LEEEVDPALGNGGLGRLAACFLDSMATVGQSATGYGLNYQYGLFRQSFVEGKQMEAPD DWHRGSYPWFRHNEALDVQVGIGGKVTKEGRWEPGFVITGQAWDLPVLGYRNGVAQPL RLWQATHAHPFDLTKFNDGAFLRAEQQGIDAEKLTKVLYPNDNHTAGKKLRLMQQYFQ CACSVADILRRHHLAGRKLHELADYEVIQLNDTHPTIAIPELLRVLIDEHQLSWDDAW AITSKTFAYTNHTLMPEALECWDEKLVKALLPRHMQIIKQINDRFKTLVDNTWPGDKQ VWAKLAVVHDRQVRMANMCVVSGFAVNGVAALHSDLVVKDLFPEYHQLWPNKFHNVTN GITPRRWIKQCNPQLAALLDKTLKKEWANDLDQLINLEKYADDAKFRQQYRDIKRANK ERLVKFIKARTGIEISSNAIFDIQIKRLHEYKRQHLNLLHILALYKEIRENPQADRVP RVFLFGAKAAPGYYLAKNIIFAINKVAEAINNDPAVGDKLKVVFLPDYCVSAAEMLIP AADISEQISTAGKEASGTGNMKLALNGALTVGTLDGANVEIAEKVGEENIFIFGHTVE EVKALKAKGYDPVKWRKKDKVLDAVLKELESGQYSDGDKHAFDQMLHSLGKQGGDPYL VMADFAAYVEAQKQVDALYRDQEAWTRAAILNTARCGMFSSDRSIRDYQARIWQAKR" misc_feature complement(3673927..3676314) /gene="malP" /locus_tag="STM3514" /note="maltodextrin phosphorylase; Provisional; Region: PRK14985" /db_xref="CDD:237881" regulatory complement(3676327..3676332) /regulatory_class="ribosome_binding_site" /gene="malP" /locus_tag="STM3514" /note="putative RBS for malP; RegulonDB:STMS1H003508" protein_bind complement(3676367..3676391) /gene="malP" /locus_tag="STM3514" /note="putative binding site for MalT, RegulonDB: STMS1H000273" /bound_moiety="MalT" regulatory complement(3676379..3676387) /regulatory_class="minus_10_signal" /gene="malP" /locus_tag="STM3514" /note="putative -10_signal for malP; RegulonDB:STMLTH004599" regulatory complement(3676398..3676406) /regulatory_class="minus_35_signal" /gene="malP" /locus_tag="STM3514" /note="putative -35_signal for malP; RegulonDB:STMLTH004599" protein_bind complement(3676402..3676427) /note="putative binding site for MalT, RegulonDB: STMS1H000275" /bound_moiety="MalT" gene 3676747..3679616 /gene="malT" /locus_tag="STM3515" /db_xref="GeneID:1255038" regulatory 3676747..3676755 /regulatory_class="minus_35_signal" /gene="malT" /locus_tag="STM3515" /note="putative -35_signal for malT; RegulonDB:STMLTH004600" protein_bind 3676771..3676791 /gene="malT" /locus_tag="STM3515" /note="putative binding site for CRP, RegulonDB: STMS1H000096" /bound_moiety="CRP" regulatory 3676774..3676782 /regulatory_class="minus_10_signal" /gene="malT" /locus_tag="STM3515" /note="putative -10_signal for malT; RegulonDB:STMLTH004600" regulatory 3676897..3676902 /regulatory_class="ribosome_binding_site" /gene="malT" /locus_tag="STM3515" /note="putative RBS for malT; RegulonDB:STMS1H003509" CDS 3676911..3679616 /gene="malT" /locus_tag="STM3515" /note="binds inducer (maltotriose) and ATP (LysR family); similar to E. coli positive regulator of mal regulon (AAC76443.1); Blastp hit to AAC76443.1 (901 aa), 91% identity in aa 1 - 901" /codon_start=1 /transl_table=11 /product="transcriptional activator of the mal genes" /protein_id="NP_462418.1" /db_xref="GeneID:1255038" /translation="MLIPSKLSRPVRLDHTVVRERLLAKLSGANNFRLALVTSPAGYG KTTLVSQWAAGKNELGWYSLDEGDNQQERFASYLIAAIQQATGGHCSTSEAMAQKRQY ASLTSLFAQLFIELAQWHRPLYLVIDDYHLITNPVIHDAMRFFLRHQPENFTLVVLSR NLPQLGIANLRVRDQLLEIGSQQLAFNHQEAKQFFDRRLSSPIEAAESSRMCDDVAGW ATALQLIALSARQNHTSAHHSARRLAGINASHLSDYLVDEVLDNVDVSTRHFLLKSAI LRSMNDALIVRVTGEENGQMRLEEIERQGLFLQRMDDTGEWFSYHPLFGSFLRQRCQW ELAAELPEIHRAAAESWMEQGFPSEAIHHALAAGDAQMLRDILLNHAWGLFNHSELAL LEESLKALPWESLLENPRLVLLQAWLMQSQHRYSEVNTLLARAEQEIKGVMDGTLHAE FNALRAQVAINDGNPEEAERLAKLALDELPLAWFYSRIVATSVHGEVLHCKGDLSQSL SLMQQTEQMARHHDVWHYALWSLIQQSEIQFAQGFLQAAWETQERAFQLIKEQHLEQL PMHEFLVRIRAQLLWAWARLDEAEASARSGIAVLSTFQPQQQLQCLTLLVQCSLARGD LDNARSQLNRLENLLGNGRYHCDWISNADKVRVIYWQLTGDKKSAANWLRHTPKPAFA NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNCNLLLLNQLYWQ SGRKNDAQRVLLDALQLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPEMEQHRAQRI LREINQHHRHKFAHFDEGFVERLLNHPDVPELIRTSPLTQREWQVLGLIYSGYSNEQI AGELAVAATTIKTHIRNLYQKLGVAHRQDAVQHAQQLLKMMGYGV" misc_feature 3676911..3679610 /gene="malT" /locus_tag="STM3515" /note="HTH-type transcriptional regulator MalT; Region: PRK04841" /db_xref="CDD:235315" gene complement(3679704..3679992) /locus_tag="STM3516" /db_xref="GeneID:1255039" CDS complement(3679704..3679979) /locus_tag="STM3516" /note="similar to E. coli orf, hypothetical protein (AAC73329.1); Blastp hit to AAC73329.1 (92 aa), 78% identity in aa 1 - 91" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462419.1" /db_xref="GeneID:1255039" /translation="MGQREIEYSGQFQKDVKRAQKRHKDVGKLKTLMTLLIHHPFPLP AIYKDHPLQGSYSGYRDAHIEPDWILIYKITDECLRFERTGTHADLF" misc_feature complement(3679707..3679970) /locus_tag="STM3516" /note="Bacterial toxin of type II toxin-antitoxin system, YafQ; Region: YafQ_toxin; pfam15738" /db_xref="CDD:434896" gene complement(3679982..3680256) /locus_tag="STM3517" /db_xref="GeneID:1255040" CDS complement(3679982..3680242) /locus_tag="STM3517" /note="resembles dinJ; similar to E. coli damage-inducible protein J (AAC73330.1); Blastp hit to AAC73330.1 (86 aa), 83% identity in aa 1 - 86" /codon_start=1 /transl_table=11 /product="putative DNA-damage-inducibile protein" /protein_id="NP_462420.1" /db_xref="GeneID:1255040" /translation="MAANALVRARIDETLKDQAADVLAEMGLTISDLIRITLTKVARE KALPFDLRIPNELTSRTIENSEAGVDIHKAKDADDLFDQLGI" misc_feature complement(3679991..3680233) /locus_tag="STM3517" /note="RelB antitoxin; Region: RelB; cl01171" /db_xref="CDD:445300" regulatory complement(3679987..3679992) /regulatory_class="ribosome_binding_site" /locus_tag="STM3517" /note="putative RBS for STM3516; RegulonDB:STMS1H003510" regulatory complement(3680251..3680256) /regulatory_class="ribosome_binding_site" /locus_tag="STM3517" /note="putative RBS for STM3517; RegulonDB:STMS1H003511" gene complement(3680351..3681381) /gene="rtcA" /locus_tag="STM3518" /db_xref="GeneID:1255041" CDS complement(3680351..3681370) /gene="rtcA" /locus_tag="STM3518" /EC_number="6.5.1.4" /note="similar to E. coli orf, hypothetical protein (AAC76444.1); Blastp hit to AAC76444.1 (201 aa), 58% identity in aa 3 - 199" /codon_start=1 /transl_table=11 /product="RNA 3'-terminal phosphate cyclase (with b3419)" /protein_id="NP_462421.1" /db_xref="GeneID:1255041" /translation="MARIIALDGAQGEGGGQILRSALSLSMITGQPFEMSGIRAGRAK PGLLRQHLTAVRAATEICGAQVNGDELGSQQLRFTPGPIRGGEYRFAIGSAGSCMLVL QTVLPALWFADGSSRVEVHGGTHNQAAPSADFICRVWEPLLARMGISQRTTLIKHGFY PAGGGAAATVVEPAASLRGLTLISRGETLRTTAEALLAAVPYHVGEREVATLEAHFPQ AEKNVVALEGGCGPGNALSLMIQSEQLTELFAAFGVKGTSAEAVANQVAHEARRYLAS PAAVGEHLADQLILPLALAGEGAFTVARASAHLLTNIAVVERFLPVRFSCEATESGYL VRVSD" misc_feature complement(3680357..3681364) /gene="rtcA" /locus_tag="STM3518" /note="RNA 3'-terminal phosphate cyclase; Region: PRK04204" /db_xref="CDD:235255" gene complement(3681374..3682600) /gene="rtcB" /locus_tag="STM3519" /db_xref="GeneID:1255042" CDS complement(3681374..3682591) /gene="rtcB" /locus_tag="STM3519" /note="similar to E. coli orf, hypothetical protein (AAC76446.1); Blastp hit to AAC76446.1 (408 aa), 87% identity in aa 1 - 408" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462422.1" /db_xref="GeneID:1255042" /translation="MMNYELMTTQNAPVKMWTKGVPVEDDARQQLINTAKMPFIFKHI AVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCGMNALRTSLTAADLPENLADLRS AIEAAVPHGRTTGRGHRDVGAWGNPPANVNEKWAQLEAGYQWLTQKYPRFLNTNNYKH LGTLGTGNHFIEICLDETDRVWIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSR DLAYFNEGSEYFDDYLKAVHWAQQFASLNREAMMENALAALQRCVEKPSALDMDEINC HHNYVQKEQHFGEEIYVTRKGAVSARRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSH GAGRVMSRTKAKKLFSVDDQIRATAHVECRKDADVIDEIPMAYKDIDAVMAAQSDLVE IMYALRQVVCVKG" misc_feature complement(3681377..3682567) /gene="rtcB" /locus_tag="STM3519" /note="RNA-splicing ligase RtcB, repairs tRNA damage [Translation, ribosomal structure and biogenesis]; Region: RtcB; COG1690" /db_xref="CDD:441296" regulatory complement(3681376..3681381) /regulatory_class="ribosome_binding_site" /gene="rtcA" /locus_tag="STM3518" /note="putative RBS for rtcA; RegulonDB:STMS1H003512" regulatory complement(3682595..3682600) /regulatory_class="ribosome_binding_site" /gene="rtcB" /locus_tag="STM3519" /note="putative RBS for rtcB; RegulonDB:STMS1H003513" gene complement(3682667..3682780) /locus_tag="STM3520" /note="pseudogene; tRNA" /pseudo /db_xref="GeneID:1255043" gene complement(3683136..3684694) /locus_tag="STM3521" /db_xref="GeneID:1255044" CDS complement(3683136..3684689) /locus_tag="STM3521" /codon_start=1 /transl_table=11 /product="putative ribonucleoprotein related-protein" /protein_id="NP_462423.1" /db_xref="GeneID:1255044" /translation="MANPLLFRSLLRDAPLANASNQQGAAAFAFTPRHKLAQMVMTGC MNETFYASGQAQLNDVLATAKDLDDLFLAQLAIYGRERGMMKDMPALLTAILAARGSA LLPVVFTRVINNGRMLRNFVQMLRSGVTGRRSLGTRPKKLVQRWLQNASEERLLQASV GNAPSLADIVKMVHPRPQAAWQEAFFAWLIGKPCDKAQLPEKTRALLAFREGDMGAAL PDVSFLLLTNAPLSREQWAQLAQRMSWQTLRMNLNTLARHDVFENATLAASVAQRLAD RAQVRQSWVYPYQLLSAWSNLQSGVPQVIREALAQAMEYALENIPPFRGNVVVCPDVS GSMKSSITGYRKGETSKIRCVDVAGLIAAAVLRNHPQARVLPFECDVVDVRLDARQSV MHNAQKLAAVGGGGTNCSAPLRRLLNERARVDLVIMVSDNESWVDKSRHGSTATMECW IELKKRNPQARLVCIDLLPYGTTQAAERSDILNVGGFSDEVFTVIDNFVNGHYGSAHW LEEIEAVTL" misc_feature complement(3683295..3684044) /locus_tag="STM3521" /note="Uncharacterized conserved protein, contains a von Willebrand factor type A (vWA) domain [Function unknown]; Region: ViaA; COG2425" /db_xref="CDD:441973" regulatory complement(3684689..3684694) /regulatory_class="ribosome_binding_site" /locus_tag="STM3521" /note="putative RBS for STM3521; RegulonDB:STMS1H003515" gene 3684866..3686462 /gene="rtcR" /locus_tag="STM3522" /db_xref="GeneID:1255045" regulatory 3684866..3684871 /regulatory_class="ribosome_binding_site" /gene="rtcR" /locus_tag="STM3522" /note="putative RBS for rtcR; RegulonDB:STMS1H003516" CDS 3684879..3686462 /gene="rtcR" /locus_tag="STM3522" /note="EBP family; similar to E. coli putative 2-component regulator (AAC76447.1); Blastp hit to AAC76447.1 (532 aa), 84% identity in aa 1 - 527" /codon_start=1 /transl_table=11 /product="sigma N (sigma 54)-dependent regulator of rtcBA expression" /protein_id="NP_462424.1" /db_xref="GeneID:1255045" /translation="MRKTVAFGFVGTVLDYAGRGSQRWEKWRPTLCLCQQETLVVHRL ELLYDARSRSLFEGLKKDIASVSPETEVVGVEIAIRNPWDFEEVYACLHDFARSHTFH PEDEDYLIHITTGTHVAQICWFLLAEARYLPARLAQTSPPRKKDKPHSTGDVTIIDLD LSRYNDIATRFAQEREETLNFLKSGIATRNPCFNRMIEQIERVAIRSRSPILLNGPTG AGKSFLARRIYELKLARHQFSGPFVEVNCATLRGDTAMSALFGHVKGAFTGAREERAG LLRSADGGMLFLDEVGELGADEQAMLLKAIEEKRFYPFGSDQQVSSDFQLIAGTVRDL RQRVAEGTFREDLYARINLWTFELPGLRQRQEDIEPNLDYELERHAALTGDSVRFNTE ARRAWLSFATSPQAAWRGNFRELSASVTRMATLADNGRITVETVDDEIARLRYSWNDH RPSALDGLPGIDATALDLFDRMQLENVVAVCRQAKTLSDAGRQLFNVSRQGKATVNDA DRLRKYLARFGLTWDVLQN" misc_feature 3684879..3686459 /gene="rtcR" /locus_tag="STM3522" /note="Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms]; Region: RtcR; COG4650" /db_xref="CDD:443688" gene complement(3686459..3687229) /gene="glpR" /locus_tag="STM3523" /db_xref="GeneID:1255046" CDS complement(3686459..3687217) /gene="glpR" /locus_tag="STM3523" /note="DeoR family; similar to E. coli repressor of the glp operon (AAC76448.1); Blastp hit to AAC76448.1 (252 aa), 93% identity in aa 1 - 252" /codon_start=1 /transl_table=11 /product="transcriptional repressor of the glp operon" /protein_id="NP_462425.1" /db_xref="GeneID:1255046" /translation="MKQTQRHDAIIELVKKQGYVSTEELVEHFSVSPQTIRRDLNDLA EQNMILRHHGGAALPSSSVNTPWHDRKATQTEEKERIARKVAAQIPNGSTLFIDIGTT PEAVAHALLGHSNLRIVTNNLNVANTLMAKEDFRIILAGGELRSRDGGIIGEATQDFI AQFRLDFGILGISGIDSDGSLLEFDYHEVRTKRAIIENSRHVMLVVDHSKFGRNAMVN MGSISMVDAVYTDTLPPPGVMQVLTENHIQLELC" misc_feature complement(3686462..3687217) /gene="glpR" /locus_tag="STM3523" /note="DeoR/GlpR family transcriptional regulator; Region: PRK10906" /db_xref="CDD:182827" regulatory complement(3687224..3687229) /regulatory_class="ribosome_binding_site" /gene="glpR" /locus_tag="STM3523" /note="putative RBS for glpR; RegulonDB:STMS1H003517" gene complement(3687311..3688141) /gene="glpG" /locus_tag="STM3524" /db_xref="GeneID:1255047" CDS complement(3687311..3688141) /gene="glpG" /locus_tag="STM3524" /note="similar to E. coli protein of glp regulon (AAC76449.1); Blastp hit to AAC76449.1 (276 aa), 88% identity in aa 1 - 275" /codon_start=1 /transl_table=11 /product="protein of glp regulon" /protein_id="NP_462426.1" /db_xref="GeneID:1255047" /translation="MLMITSFANPRVAQAFVDYMATQGVILTIQQHNQSDIWLADESQ AERVRGELARFIENPGDPRYLAASWQSGQTNSGLRYRRFPFLATLRERAGPVTWIVML ACVLVYIAMSLIGDQTVMVWLAWPFDPVLKFEVWRYFTHIFMHFSLMHILFNLLWWWY LGGAVEKRLGSGKLIVITVISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERD PQSGIYLQRGLIIFALLWIVAGWFDWFGMSMANGAHIAGLIVGLAMAFVDTLNARKRT " misc_feature complement(3687314..3688141) /gene="glpG" /locus_tag="STM3524" /note="intramembrane serine protease GlpG; Provisional; Region: PRK10907" /db_xref="CDD:182828" gene complement(3688217..3688543) /gene="glpE" /locus_tag="STM3525" /db_xref="GeneID:1255048" CDS complement(3688217..3688543) /gene="glpE" /locus_tag="STM3525" /note="rhodanese; similar to E. coli protein of glp regulon (AAC76450.1); Blastp hit to AAC76450.1 (108 aa), 81% identity in aa 1 - 108" /codon_start=1 /transl_table=11 /product="thiosulfate/cyanide sulfurtransferase" /protein_id="NP_462427.1" /db_xref="GeneID:1255048" /translation="MEQFECITVEEAYQKLHQGAAVLVDIRDPQSYAMGHAPQAFHLT NDTLGAFMREHGFDTAVMVMCYHGNSSKGAAQYLLQQGYDAVYSIDGGFEAWHRRFPA DVANGA" misc_feature complement(3688220..3688543) /gene="glpE" /locus_tag="STM3525" /note="thiosulfate sulfurtransferase GlpE; Region: glpE; PRK00162" /db_xref="CDD:178908" misc_feature complement(3688349..3688351) /gene="glpE" /locus_tag="STM3525" /note="active site residue [active]" /db_xref="CDD:238721" protein_bind 3688627..3688647 /note="putative binding site for CRP, RegulonDB: STMS1H000119" /bound_moiety="CRP" gene 3688661..3690250 /gene="glpD" /locus_tag="STM3526" /db_xref="GeneID:1255049" regulatory 3688661..3688669 /regulatory_class="minus_35_signal" /gene="glpD" /locus_tag="STM3526" /note="putative -35_signal for glpD; RegulonDB:STMLTH004601" regulatory 3688685..3688693 /regulatory_class="minus_10_signal" /gene="glpD" /locus_tag="STM3526" /note="putative -10_signal for glpD; RegulonDB:STMLTH004601" protein_bind 3688691..3688711 /gene="glpD" /locus_tag="STM3526" /note="putative binding site for GlpR, RegulonDB: STMS1H000206" /bound_moiety="GlpR" protein_bind 3688701..3688721 /gene="glpD" /locus_tag="STM3526" /note="putative binding site for GlpR, RegulonDB: STMS1H000216" /bound_moiety="GlpR" regulatory 3688733..3688738 /regulatory_class="ribosome_binding_site" /gene="glpD" /locus_tag="STM3526" /note="putative RBS for glpD; RegulonDB:STMS1H003518" CDS 3688742..3690250 /gene="glpD" /locus_tag="STM3526" /EC_number="1.1.5.3" /note="aerobic; similar to E. coli sn-glycerol-3-phosphate dehydrogenase (aerobic) (AAC76451.1); Blastp hit to AAC76451.1 (501 aa), 90% identity in aa 1 - 501" /codon_start=1 /transl_table=11 /product="sn-glycerol-3-phosphate dehydrogenase" /protein_id="NP_462428.1" /db_xref="GeneID:1255049" /translation="METKDLIVIGGGINGAGIAADAAGRGLSVLMLEAQDLACATSSA SSKLIHGGLRYLEHYEFRLVSEALAEREVLLKMAPHIAFPMRFRLPHRPHLRPAWMIR IGLFMYDHLGKRTSLPGSTGVRFGADSVLKPEIVRGFEYSDCWVDDARLVLANAQMVV RKGGEVLTRTRATAARRENGLWIVEAEDIDTGKKYVWQARGLVNATGPWVKQFFDEGM HLPSPYGIRLIKGSHIVVPRVHNQKQAYILQNEDKRIVFVIPWMEEFSIIGTTDVEYK GDPKAVKIEESEINYLLKVYNAHFQKQLGRDDIVWTYSGVRPLCDDESDSPQAITRDY TLDIHDENGKAPLLSVFGGKLTTYRKLAEHAMEKLASYYPGIGPAWTKTCVLPGGDID GSREDYAAKLRRRYPFLTESLARHYSRTYGSNTEWILGEATSLLDLGEDFGHEFYEAE LKYLVDHEWVRRTEDAIWRRTKEGMWLTAEQQSRITQWLAAYVEKHQLSMAS" misc_feature 3688820..3690244 /gene="glpD" /locus_tag="STM3526" /note="glycerol-3-phosphate dehydrogenase; Reviewed; Region: glpD; PRK12266" /db_xref="CDD:237027" gene complement(3690297..3690852) /locus_tag="STM3527" /db_xref="GeneID:1255050" CDS complement(3690297..3690842) /locus_tag="STM3527" /note="similar to E. coli orf, hypothetical protein (AAC73602.1); Blastp hit to AAC73602.1 (86 aa), 35% identity in aa 21 - 85" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462429.1" /db_xref="GeneID:1255050" /translation="MEEVKLYVERVGIDPASGADIRIARRESTSWHKDIVAELINQVL RCGAALIIIAVLTACDDRQVSYFPDYAAIPEQSGIWTWLPVFFPSSASEIEMTFNLDS NLFYADFSVADGDKRAHFESVLGEESVVHYANFSHKSWCKTGKTLWNSEARAKPFFIT QISVDRYRITNHMPGCTKPGE" misc_feature complement(3690300..3690842) /locus_tag="STM3527" /note="hypothetical protein; Provisional; Region: PRK09781" /db_xref="CDD:170092" regulatory complement(3690847..3690852) /regulatory_class="ribosome_binding_site" /locus_tag="STM3527" /note="putative RBS for STM3527; RegulonDB:STMS1H003519" gene complement(3690852..3692416) /locus_tag="STM3528" /db_xref="GeneID:1255051" CDS complement(3690852..3692411) /locus_tag="STM3528" /codon_start=1 /transl_table=11 /product="putative periplasmic phosphate-binding protein" /protein_id="NP_462430.1" /db_xref="GeneID:1255051" /translation="MGGLRTTGFILPLSQGLADRKMKNANWLFLSIIMAFIGVPLLVN IITIIVGGMWAYISVLENSIPVARSIEEATIIPVALLGAGLIFLCGRIWGKGNASEVN PEWRDCCLLMPALVVLMGWVILMFLTDLNIRAIGCKPIAQVVQTLWLVPRVISFFNGW VWAVLLIPVGSQLCFALGYGGARWGVLRGGAGYTCRNLLVICLLFFGSCAVYQSHLYA VKYPAPESSEYLYFRDYQAHTWGNKLTGLRDEPTLLLTQNWPRLDGATAGLPLYASAF YALTRFPDDICPEDYLENQGTIEAYQNILNGNADLIFVAQPSTAQKQLAEASGVKLVY TPFAREAFVFIVNQNNPVSSLSDVQIRGIFSGRITHWNEVGGEAIDIKPWQRPENSGS QTAMLAKVMKETKLMPAQTTSVATAMGDMVDIVAEYRNTHNAIGYTFRYYATQMHSNK EIKLLAINDVAPTVENIRNGSYPYTVDVYMVTREHPTAETQKLVDWFLSPQGQQLVQD VGYVPLYPAAK" misc_feature complement(3690855..3691631) /locus_tag="STM3528" /note="ABC-type phosphate transport system, periplasmic component [Inorganic ion transport and metabolism]; Region: PstS; COG0226" /db_xref="CDD:439996" regulatory complement(3692411..3692416) /regulatory_class="ribosome_binding_site" /locus_tag="STM3528" /note="putative RBS for STM3528; RegulonDB:STMS1H003520" gene complement(3692505..3693621) /locus_tag="STM3529" /db_xref="GeneID:1255052" CDS complement(3692505..3693614) /locus_tag="STM3529" /EC_number="1.1.1.6" /EC_number="1.1.5.3" /note="similar to E. coli glycerol dehydrogenase, (NAD) (AAC76927.1); Blastp hit to AAC76927.1 (380 aa), 49% identity in aa 21 - 373" /codon_start=1 /transl_table=11 /product="putative glycerol dehydrogenase" /protein_id="NP_462431.1" /db_xref="GeneID:1255052" /translation="MVTTAIFPSRYVQGKGALTTHLPQELAALGHKALILQDPVVHNT YRDTVATALHGVIEFDIEVFSSECCDEEIARISARAQEIGADVIVGMGGGKTLDTAKA TGASLRLPIAVVPTLASTDAPCSSLVVIYTPEGKFKRYLMIPRNPTLVLVDSSIIAAA PVRFLVSGIGDALATWFEAEDCRIKGAGNMTTRPGPMTAFELARFCYTTLMRYGRLAK LACEQHQVTPALEHVIEANTLLSGLGFESGGLAAAHAIHNGLTVLPATHKYWHGEKVA FGTLAMLMLTDRAPELIEEVYQFCEDIGLPTTLADIGLAGVSDDELLAVARASCQTGE TIHNEPFTITPEAVQAALRAADAVGQARKKIDLAG" misc_feature complement(3692523..3693614) /locus_tag="STM3529" /note="glycerol dehydrogenase; Provisional; Region: gldA; PRK09423" /db_xref="CDD:181843" misc_feature complement(order(3692910..3692912,3692919..3692924, 3692991..3692993,3693000..3693002,3693573..3693578, 3693582..3693590)) /locus_tag="STM3529" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:341449" misc_feature complement(order(3692802..3692804,3692841..3692843, 3692853..3692855,3693090..3693092,3693102..3693104, 3693123..3693125,3693147..3693149,3693198..3693203, 3693258..3693260,3693264..3693269,3693312..3693314, 3693321..3693323,3693330..3693338,3693501..3693503)) /locus_tag="STM3529" /note="active site" /db_xref="CDD:341449" misc_feature complement(order(3692802..3692804,3692853..3692855, 3693102..3693104)) /locus_tag="STM3529" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:341449" regulatory complement(3693616..3693621) /regulatory_class="ribosome_binding_site" /locus_tag="STM3529" /note="putative RBS for STM3529; RegulonDB:STMS1H003521" gene 3693952..3695286 /locus_tag="STM3530" /note="pseudogene; frameshift; putative permease" /pseudo /db_xref="GeneID:1255053" gene 3695266..3696998 /locus_tag="STM3531" /db_xref="GeneID:1255054" regulatory 3695266..3695271 /regulatory_class="ribosome_binding_site" /locus_tag="STM3530" /note="putative RBS for STM3531; RegulonDB:STMS1H003523" /pseudo CDS 3695283..3696998 /locus_tag="STM3531" /EC_number="4.2.1.9" /EC_number="1.1.5.3" /note="similar to E. coli putative dehydratase (AAC73372.1); Blastp hit to AAC73372.1 (655 aa), 39% identity in aa 86 - 578" /codon_start=1 /transl_table=11 /product="putative dihydroxyacid dehydratase" /protein_id="NP_462432.1" /db_xref="GeneID:1255054" /translation="MSQKCQHARDLWSQLDALRLGMNYSKEDVNKLQVLVDDCYGESH PGSFHLNQLGDEAVLGVHESGGRAVRHHVTDICDGWGQGHDGMNYILASREAIANMVE IHASVVPYDAGILISSCDKSIPAHLIAAARLNLPLLHIPGGSMRPAPNMSTSDLGGIT AKLRKGEIGIQQVEAMQQCGCPTAGACQFMGTASTMQCMSEALGLALPGSALLPSTLA EIRRVARTAGHQALYLAEKNITTHKILTPAAFENAIKVHAAIGGSTNAMIHLPAIAHE LGWELKPELFDRINNEIPYLTNIQPSGEYVTEMMWFAGGVPMVQWYLRDYLDLDVLTV TGRTLGDNLEMLHQSGFFTRNHGYLNNYKVSPEEVIRKPENATKKGSIAVLKGNIAPE GAVIKYAACAPDMHHHTGPARVFNSEEDAQQAIIHNHIEPGDVIFIRYEGAKGSGAPE MLMTTDAIVYDKRLDGKVALITDGRFSGATSGPCVGHVSPEAADGGPIALVEDGDLIE MDVKGRKLNIVGIDGMPKTEEEIRRCLEERRASWKKPDYSNRRGVFKQFTANATSLMA GAWLK" misc_feature 3695379..3696986 /locus_tag="STM3531" /note="Dehydratase family; Region: ILVD_EDD; pfam00920" /db_xref="CDD:459998" gene 3697030..3697947 /locus_tag="STM3532" /db_xref="GeneID:1255055" regulatory 3697030..3697035 /regulatory_class="ribosome_binding_site" /locus_tag="STM3532" /note="putative RBS for STM3532; RegulonDB:STMS1H003524" CDS 3697042..3697947 /locus_tag="STM3532" /note="similar to E. coli putative lyase/synthase (AAC73371.1); Blastp hit to AAC73371.1 (309 aa), 43% identity in aa 8 - 308" /codon_start=1 /transl_table=11 /product="putative dihydrodipicolinate synthetase" /protein_id="NP_462433.1" /db_xref="GeneID:1255055" /translation="MTQITKFHGVFPPVPTIVNAQGELDKVGMATLLDHLIASKVNGV LLLGSGGEFCHMTNALRLETAEFCVRHINRRIPVLLGISSTSTQEVIEYGQHADRLEV DAVLVLNPYYARLTDEYIYHHFKTVANNIKSPVILYNFPALTGQDLSVDLITRLAQDH PNIIGIKDTVDNISHIREIINNVRPVRPDFVIFSGYDEYMMDTLILGGNGGIPATANF APQLTCGIYRAWCEKEYETMFGLQRRLSALSTIYSLDSPFFGIIKKAIQLSGVDISTH VMPPVLPANEEHISNLKQILQRAGL" misc_feature 3697057..3697944 /locus_tag="STM3532" /note="4-hydroxy-tetrahydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism, Cell wall/membrane/envelope biogenesis]; Region: DapA; COG0329" /db_xref="CDD:440098" gene complement(3697991..3698746) /locus_tag="STM3533" /db_xref="GeneID:1255056" CDS complement(3697991..3698746) /locus_tag="STM3533" /note="similar to E. coli putative regulator (AAC75308.1); Blastp hit to AAC75308.1 (260 aa), 38% identity in aa 4 - 249" /codon_start=1 /transl_table=11 /product="putative bacterial transcriptional regulator" /protein_id="NP_462434.1" /db_xref="GeneID:1255056" /translation="MKKITTSIPALDKIMRVFAYLLECDGATFTQIHQNSGIAKSSTS SLLNGMVEHGLLRQEKDKYYLGLRLYELGNKAAEQYDIKKIALPILEEIRDNTGLTCH LGVLEGDAPIYLLKVESPQAIVIRSWEGKRLSLHSSGLGKVLIAWLSGEELEELLPPD QILTRFTDTTITDVNILKQELAGIRRRGWGYDNEEDSLGVRCIAVPVFNTQGKVIAAL SVSGVTFQIPDDKRESLATLMMDASRSLTRLMC" misc_feature complement(3697997..3698734) /locus_tag="STM3533" /note="DNA-binding transcriptional regulator, IclR family [Transcription]; Region: IclR; COG1414" /db_xref="CDD:441024" gene complement(3698924..3701385) /gene="glgP" /locus_tag="STM3534" /db_xref="GeneID:1255057" CDS complement(3698924..3701371) /gene="glgP" /locus_tag="STM3534" /EC_number="2.4.1.1" /note="similar to E. coli glycogen phosphorylase (AAC76453.1); Blastp hit to AAC76453.1 (815 aa), 93% identity in aa 1 - 815" /codon_start=1 /transl_table=11 /product="glycogen phosphorylase" /protein_id="NP_462435.1" /db_xref="GeneID:1255057" /translation="MNAPFTYASPTLSVEALKHSIAYKLMFTIGKDPVIANKHEWLNA TLFAVRDRLVERWLRSNRAQLSQETRQVYYLSMEFLIGRTLSNALLSLGIYDDVKGAL EAMGLDLEELIDEENDPGLGNGGLGRLAACFLDSLATLGLPGRGYGIRYDYGMFKQNI VDGRQKESPDYWLEYGNPWEFKRHNTRYKVLFGGRIQQEGKKARWIETEEILAVAYDQ IIPGYDTDATNTLRLWNAQASSEINLGKFNQGDYFAAVEDKNHSENVSRVLYPDDSTY SGRELRLRQEYFLVSATVQDILHRHYQLHKTYENLADKIAIHLNDTHPVLSIPELMRL LIDEHKFSWDDAFEVCCQVFSYTNHTLMSEALETWPVDMLGKILPRHLQIIFEINDYF LKTVQEQYPNDTSLLGRASIIDESNGRRVRMAWLAVVVSHKVNGVSELHSNLMVQSLF ADFAKIFPTRFCNVTNGVTPRRWLALANPPLSDVLDENIGRTWRTDLSQLSELKQHCD YPLVNHAVRQAKLENKKRLAVVIAQQLNVVVNPKALFDVQIKRIHEYKRQLMNVLHVI TRYNRIKENPEADWVPRVNIFAGKAASAYYMAKHIIHLINDVAKVINNDPQIGDKLKV VFIPNYSVSLAQVIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGANVEMQ EHIGEENIFIFGNTAEEVEALRRQGYKPRDYYEKDEELHQVLTQIGSGVFNPEEPGRY RDLVDSLINFGDHYQVLADYRSYVDCQDKVDELYRRPEEWTTKAMLNIANMGYFSSDR TIKEYAENIWHIDPVRL" misc_feature complement(3698927..3701371) /gene="glgP" /locus_tag="STM3534" /note="glycogen phosphorylase; Provisional; Region: PRK14986" /db_xref="CDD:184948" regulatory complement(3701380..3701385) /regulatory_class="ribosome_binding_site" /gene="glgP" /locus_tag="STM3534" /note="putative RBS for glgP; RegulonDB:STMS1H003525" gene complement(3701391..3702835) /gene="glgA" /locus_tag="STM3535" /db_xref="GeneID:1255058" CDS complement(3701391..3702824) /gene="glgA" /locus_tag="STM3535" /EC_number="2.4.1.21" /note="glycogen synthase. (SW:GLGA_SALTY)" /codon_start=1 /transl_table=11 /product="glycogen synthase" /protein_id="NP_462436.1" /db_xref="GeneID:1255058" /translation="MQVLHVCSEMFPLLKTGGLADVIGALPAAQIADGVDVRVLLPGF PDIRRGIPDAHVVSRRDTFAGKISLLFGHYNGVGIYLIDAPHLYERPGSPYHDTNLYA YTDNVLRFALLGWVGCEMACGLDPFWRPDVVHAHDWHAGLAPAYLAARGRPAKSVFTV HNLAYQGMFYAKHMDDIELPWSFFNMHGLEFNGQLSFLKAGLYYADHITAVSPTYARE ITEPQFAYGMEGLLRQRHLEGRLSGILNGVDEKIWNPESDLLLASRYTRDTLEEKAEN KRQLQIAMGLKVNDKVPLFAVVSRLTNQKGLDLVLEALPGLLEQGGQLALLGAGDPVL QEGFLAAAAEHPGQVGVQIGYHEAFSHRIMGGADVILVPSRFEPCGLTQLYGLKYGTL PLVRRTGGLADTVSDSSLENLADGIASGFVFEDSNAWSLLRAIRRAFVLWSRPSLWRF VQRQAMAMDFSWQVAAKSYRELYYRLK" misc_feature complement(3701397..3702824) /gene="glgA" /locus_tag="STM3535" /note="glycogen synthase GlgA; Region: glgA; PRK00654" /db_xref="CDD:234809" gene complement(3702824..3704278) /gene="glgC" /locus_tag="STM3536" /db_xref="GeneID:1255059" CDS complement(3702824..3704119) /gene="glgC" /locus_tag="STM3536" /EC_number="2.7.7.27" /note="glucose-1-phosphate adenylyltransferase. (SW:GLGC_SALTY)" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate adenylyltransferase" /protein_id="NP_462437.1" /db_xref="GeneID:1255059" /translation="MVSLEKNDRVMLARQLPLKSVALILAGGRGTRLKDLTNKRAKPA VHFGGKFRIIDFALSNCLNSGIRRIGVITQYQSHTLVQHIQRGWSLFSEEMNEFVDLL PAQQRMKGENWYRGTADAVTQNLDIIRRYKAEYVVILAGDHIYKQDYSRMLIDHVEKG ARCTVACMPVPIKEATAFGVMAVDESDKIIDFVEKPANPPAMPGDASKSLASMGIYVF DADYLYELLAADDKDDASSHDFGKDIIPKITREGMAYAHPFPLSCVQSDPQAEPYWRD VGTLEAYWKANLDLASVTPELDMYDQNWPIRTHMESLPPAKFVQDRSGSHGMTLNSLV SGGCIISGSVVVQSVLFPRVRINSFCNIDSAVLLPEVWVGRSCRLRRCVIDRACIIPE GMVIGENAEEDARRFYRSEEGIVLVTREMLRKLQVKQER" misc_feature complement(3702833..3704107) /gene="glgC" /locus_tag="STM3536" /note="glucose-1-phosphate adenylyltransferase; Provisional; Region: glgC; PRK00725" /db_xref="CDD:234824" regulatory complement(3702830..3702835) /regulatory_class="ribosome_binding_site" /gene="glgA" /locus_tag="STM3535" /note="putative RBS for glgA; RegulonDB:STMS1H003526" regulatory complement(3704126..3704131) /regulatory_class="ribosome_binding_site" /gene="glgC" /locus_tag="STM3536" /note="putative RBS for glgC; RegulonDB:STMS1H003527" gene complement(3704134..3706118) /gene="glgX" /locus_tag="STM3537" /db_xref="GeneID:1255060" CDS complement(3704134..3706110) /gene="glgX" /locus_tag="STM3537" /EC_number="3.2.1.-" /note="similar to E. coli part of glycogen operon, a glycosyl hydrolase, debranching enzyme (AAC76456.1); Blastp hit to AAC76456.1 (657 aa), 85% identity in aa 1 - 657" /codon_start=1 /transl_table=11 /product="glycosyl hydrolase" /protein_id="NP_462438.1" /db_xref="GeneID:1255060" /translation="MTQLAIGEATPHGATYDGHGVNFTLFSAHAERVELCVFDSRGNE RRYDLPGRRGDVWHGYLAGARPGLRYGYRVHGPWQPAQGHRFNPAKLLLDPYARRVEG ELKDHPLLHGGHDEPDYRDNAAVAPKSVVISDHYDWEDDAAPRTPWGKTVIYEAHVKG LTYLHPELPQEIRGTYKALGHPVMVAYFKQLGITALELLPVAQFASEPRLQRMGLTNY WGYNPMAMFALHPAWASSPETALDEFRDAVKALHRAGIEVILDIVLNHSAELDLDGPT FSLRGIDNRSYYWIRDDGDYHNWTGCGNTLNLSHPGVVEYACECLRYWVETCHVDGFR FDLASVMGRTPTFRQDAPLFAAIKACPVLSTVKLIAEPWDIGEGGYQVGNFPPPFAEW NDHFRDAARRFWLPRNLTTGEFACRFAASSDVFKRNGRAPGASVNLLTAHDGFTLRDC VCFNQKHNEANGEENRDGTNSNYSDNHGKEGLGGPLDLMERRRDSIHALLATLLLSQG TPMLLAGDEHGHSQHGNNNAYCQDNALTWLDWQQANRGLTTFTAALIRLRQQIPALTG NSWWEEGDGNVRWLNKNAQPLSADEWQNGPKLMQILLSDRFLIAINATLEVTDIVLPE GEWRAVPPFAGEDNPVITAVWQGPAHGLCVFQRG" misc_feature complement(3704137..3706110) /gene="glgX" /locus_tag="STM3537" /note="glycogen debranching protein GlgX; Region: PRK03705" /db_xref="CDD:235152" regulatory complement(3704254..3704262) /regulatory_class="minus_10_signal" /gene="glgC" /locus_tag="STM3536" /note="putative -10_signal for glgC; RegulonDB:STMLTH004602" regulatory complement(3704270..3704278) /regulatory_class="minus_35_signal" /gene="glgC" /locus_tag="STM3536" /note="putative -35_signal for glgC; RegulonDB:STMLTH004602" gene complement(3706107..3708307) /gene="glgB" /locus_tag="STM3538" /db_xref="GeneID:1255061" CDS complement(3706107..3708293) /gene="glgB" /locus_tag="STM3538" /EC_number="2.4.1.18" /note="similar to E. coli 1,4-alpha-glucan branching enzyme (AAC76457.1); Blastp hit to AAC76457.1 (728 aa), 93% identity in aa 1 - 728" /codon_start=1 /transl_table=11 /product="1,4-alpha-glucan branching enzyme" /protein_id="NP_462439.1" /db_xref="GeneID:1255061" /translation="MSSRIDRDVINALIAGHFADPFSVLGMHQTQAGLEVRALLPDAT DVWVIEPKTGRKVGKLECLDARGFFCGVLPRRKNFFRYQLAVTWHGQQNLIDDPYRFG PLIQEMDAWLLSEGTHLRPYETLGAHADTMDGVTGTRFSVWAPNARRVSVVGQFNYWD GRRHPMRLRKESGIWELFIPGAHNGQLYKFELLDANGNLRIKADPYAFEAQMRPETAS MICGLPEKVTPGEERQKANQFDAPISIYEVHLGSWRRHTDNNFWLSYRELADQLVPYA KWMGFTHLELLPVNEHPFDGSWGYQPTGLYAPTRRFGTRDDFRYFINAAHAAGLNVIL DWVPGHFPSDEFSLAEFDGTHLYEHSDPREGYHQDWNTLIYNYGRREVSNYLVGNALY WMERFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRIIGEQV PGAVSMAEESTDFSGVTRPPETGGLGFWYKWNLGWMHDTLDYMKLDPVYRQYHHDKLT FGMLYNHTENFVLPLSHDEVVHGKKSILDRMPGDAWQKFANLRAYYGWMWAFPGKKLL FMGNEFAQGREWNHDASLDWHLLEGGDNWHHGVQRLVRDLNHTYRHHKALHELDFDAY GFEWLVVDDNERSVLIFVRRDKAGNEIIVASNFTPVPRHDYRFGINQPGRWREILNTD SMHYHGSNTGNGGVVHSDEIESHGRQHSLNLTLPPLATIWLMREGE" misc_feature complement(3706110..3708281) /gene="glgB" /locus_tag="STM3538" /note="1,4-alpha-glucan branching protein GlgB; Region: PRK05402" /db_xref="CDD:235445" misc_feature complement(order(3706716..3706721,3706920..3706922, 3707076..3707081,3707085..3707087)) /gene="glgB" /locus_tag="STM3538" /note="active site" /db_xref="CDD:200461" misc_feature complement(order(3706716..3706718,3706920..3706922, 3707079..3707081)) /gene="glgB" /locus_tag="STM3538" /note="catalytic site [active]" /db_xref="CDD:200461" regulatory complement(3706113..3706118) /regulatory_class="ribosome_binding_site" /gene="glgX" /locus_tag="STM3537" /note="putative RBS for glgX; RegulonDB:STMS1H003528" regulatory complement(3708302..3708307) /regulatory_class="ribosome_binding_site" /gene="glgB" /locus_tag="STM3538" /note="putative RBS for glgB; RegulonDB:STMS1H003529" gene complement(3708640..3709761) /gene="asd" /locus_tag="STM3539" /db_xref="GeneID:1255062" CDS complement(3708640..3709746) /gene="asd" /locus_tag="STM3539" /EC_number="1.2.1.11" /note="aspartate-semialdehyde dehydrogenase. (SW:DHAS_SALTY)" /codon_start=1 /transl_table=11 /product="aspartate-semialdehyde dehydrogenase" /protein_id="NP_462440.1" /db_xref="GeneID:1255062" /translation="MKNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQFGQAA PTFGDTSTGTLQDAFDLDALKALDIIVTCQGGDYTNEIYPKLRESGWQGYWIDAASTL RMKDDAIIILDPVNQDVITDGLNNGVKTFVGGNCTVSLMLMSLGGLFAHNLVDWVSVA TYQAASGGGARHMRELLTQMGQLYGHVADELATPSSAILDIERKVTALTRSGELPVDN FGVPLAGSLIPWIDKQLDNGQSREEWKGQAETNKILNTASVIPVDGLCVRVGALRCHS QAFTIKLKKEVSIPTVEELLAAHNPWAKVVPNDRDITMRELTPAAVTGTLTTPVGRLR KLNMGPEFLSAFTVGDQLLWGAAEPLRRMLRQLA" misc_feature complement(3708646..3709746) /gene="asd" /locus_tag="STM3539" /note="aspartate-semialdehyde dehydrogenase; Reviewed; Region: PRK06598" /db_xref="CDD:235839" regulatory complement(3709756..3709761) /regulatory_class="ribosome_binding_site" /gene="asd" /locus_tag="STM3539" /note="putative RBS for asd; RegulonDB:STMS1H003530" gene 3709870..3710253 /gene="yhgN" /locus_tag="STM3540" /db_xref="GeneID:2673721" regulatory 3709870..3709875 /regulatory_class="ribosome_binding_site" /gene="yhgN" /locus_tag="STM3540" /note="putative RBS for yhgN; RegulonDB:STMS1H003531" CDS 3709873..3710253 /gene="yhgN" /locus_tag="STM3540" /note="similar to E. coli orf, hypothetical protein (AAC76459.1); Blastp hit to AAC76459.1 (197 aa), 72% identity in aa 4 - 39" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_452851.1" /db_xref="GeneID:2673721" /translation="MRLILPYRASRKSSGDYQGICVRKGIISVAVLLILIMDQRRNLP AFMRVLKHGEAKCRWAIAMHTSIKKPGSDYALPGLRCRYVPVSRPGKHRATGQQDSAQ QLESNHPDNRADRTEDSFHHRPGF" misc_feature 3709948..>3710055 /gene="yhgN" /locus_tag="STM3540" /note="Cytochrome C biogenesis protein transmembrane region; Region: DsbD; cl21514" /db_xref="CDD:473893" gene complement(3710170..3711523) /gene="gntU" /locus_tag="STM3541" /db_xref="GeneID:1255064" CDS complement(3710170..3711510) /gene="gntU" /locus_tag="STM3541" /note="similar to E. coli low-affinity gluconate transport permease protein, interrupted (AAC76461.1); Blastp hit to AAC76461.1 (332 aa), 96% identity in aa 1 - 331" /codon_start=1 /transl_table=11 /product="low affinity gluconate permease" /protein_id="NP_462442.1" /db_xref="GeneID:1255064" /translation="MSTLTLVLTAVGSVLLLLFLVMKARMHAFVALMVVSMGAGLFSG MPLDKIAATMEKGMGGTLGFLAIVVALGAMFGKILHETGAVDQIAVKMLKSFGHSRAH YAIGLAGLICALPLFFEVAIVLLISVAFSMARHTGTNLVKLVIPLFAGVAAAAAFLLP GPAPMLLASQMHADFGWMILIGLCAAIPGMIIAGPLWGNFISRYVELHVPEDITEPHL GEGKMPSFGFSLSLILLPLVLVGLKTIAARFVPEGSTAYEWFEFIGHPFTAILVACLV AIYGLAMRQGMPKDKVMEICGHALQPAGIILLVIGAGGVFKQVLVDSGVGPALGEALT GMGLPIAITCFVLAAAVRIIQGSATVACLTAVGLVMPVIEQLNFSGAQMAALSICIAG GSIVVSHVNDAGFWLFGKFTGATEAQTLKTWTMMETILGTVGAIVGMIAFQLLS" misc_feature complement(3710176..3711510) /gene="gntU" /locus_tag="STM3541" /note="low affinity gluconate transporter; Provisional; Region: PRK10472" /db_xref="CDD:182485" gene complement(3711507..3712210) /gene="gntK" /locus_tag="STM3542" /db_xref="GeneID:1255065" CDS complement(3711507..3712040) /gene="gntK" /locus_tag="STM3542" /EC_number="2.7.1.12" /note="thermoresistant; similar to E. coli gluconokinase 2, thermoresistant (AAC76462.1); Blastp hit to AAC76462.1 (162 aa), 96% identity in aa 1 - 161" /codon_start=1 /transl_table=11 /product="gluconate kinase 2 in GNT I system" /protein_id="NP_462443.1" /db_xref="GeneID:1255065" /translation="MSTTNHDHHVYVLMGVSGSGKSAVASAVAHQLHAAFLDGDFLHP RCNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKISLIVCSALKKHYRDLLREGN PNLSFIYLKGDFDVIESRLKARKGHFFKTQMLVTQFETLQEPGADERDVLVVDIDQPL EGVVASTIEVINKGSTL" misc_feature complement(3711513..3712001) /gene="gntK" /locus_tag="STM3542" /note="gluconokinase; Region: gntK; PRK11545" /db_xref="CDD:236926" misc_feature complement(order(3711669..3711671,3711681..3711683, 3711921..3711923,3711927..3711929,3711975..3711998)) /gene="gntK" /locus_tag="STM3542" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:238979" misc_feature complement(order(3711669..3711671,3711987..3711992)) /gene="gntK" /locus_tag="STM3542" /note="Gluconate-6-phosphate binding site [chemical binding]; other site" /db_xref="CDD:238979" regulatory complement(3711518..3711523) /regulatory_class="ribosome_binding_site" /gene="gntK" /locus_tag="STM3542" /note="putative RBS for gntU; RegulonDB:STMS1H003532" regulatory complement(3712048..3712053) /regulatory_class="ribosome_binding_site" /gene="gntK" /locus_tag="STM3542" /note="putative RBS for gntK; RegulonDB:STMS1H003533" gene complement(3712179..3713181) /gene="gntR" /locus_tag="STM3543" /db_xref="GeneID:1255066" CDS complement(3712179..3713174) /gene="gntR" /locus_tag="STM3543" /note="gntUKR; GalR/LacI family; similar to E. coli regulator of gluconate (gnt) operon (AAC76463.1); Blastp hit to AAC76463.1 (313 aa), 97% identity in aa 1 - 304" /codon_start=1 /transl_table=11 /product="transcriptional repressor gnt-I" /protein_id="NP_462444.1" /db_xref="GeneID:1255066" /translation="MKKKRPVLQDVADRVGVTKMTVSRFLRNPEQVSVALRGKIAAAL DELGYIPNRAPDILSNATSRAIGVLLPSLTNQVFAEVLRGIEAVTDAHGYQTMLAHYG YKPEMEQERLESMLSWNIDGLILTERTHTPRTLKMIEVAGIPVVELMDSQSPCLDIAV GFDNFEAARQMTAAIIARGHRHIAYLGARLDERTIIKQKGYEQAMRDAGLVPYSVMME QSSSYSSGIELMRQARREYPQLDGIFCTNDDLAVGAAFECQRLGLKIPDDMAIAGFHG HDIGQVMEPRLASVLTPRERMGSIGAERLLARIRGETVTPKMLDLGFTLSPGGSI" misc_feature complement(3712182..3713174) /gene="gntR" /locus_tag="STM3543" /note="HTH-type transcriptional regulator GntR; Region: PRK14987" /db_xref="CDD:184949" regulatory complement(3712183..3712191) /regulatory_class="minus_10_signal" /gene="gntK" /locus_tag="STM3542" /note="putative -10_signal for gntK; RegulonDB:STMLTH004603" regulatory complement(3712202..3712210) /regulatory_class="minus_35_signal" /gene="gntK" /locus_tag="STM3542" /note="putative -35_signal for gntK; RegulonDB:STMLTH004603" regulatory complement(3713176..3713181) /regulatory_class="ribosome_binding_site" /gene="gntR" /locus_tag="STM3543" /note="putative RBS for gntR; RegulonDB:STMS1H003534" gene complement(3713304..3714014) /gene="yhhW" /locus_tag="STM3544" /db_xref="GeneID:1255067" CDS complement(3713304..3713999) /gene="yhhW" /locus_tag="STM3544" /note="similar to E. coli orf, hypothetical protein (AAC76464.1); Blastp hit to AAC76464.1 (231 aa), 93% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462445.1" /db_xref="GeneID:1255067" /translation="MIYLRKANDRGHANHGWLDSWHTFSFADYYDPNFMGFSALRVIN DDVIDAGQGFGTHPHKDMEILTYVLEGAVEHQDSMGNKEQVPAGEFQIMSAGTGVRHS EYNPSKTDRLRLYQIWIIPQETGITPRYEQRRFDAAQGKQLVLSPDARDGSLKVHQDM ELYRWALLKDEQSVHQIAAERRVWIQVVKGNVTINGTKATTSDGLAIWDEQAISIHAD SDSEVLLFDLPPV" misc_feature complement(3713310..3713972) /gene="yhhW" /locus_tag="STM3544" /note="Redox-sensitive bicupin YhaK, pirin superfamily [General function prediction only]; Region: YhaK; COG1741" /db_xref="CDD:441347" regulatory complement(3714009..3714014) /regulatory_class="ribosome_binding_site" /gene="yhhW" /locus_tag="STM3544" /note="putative RBS for yhhW; RegulonDB:STMS1H003535" gene complement(3714123..3715172) /gene="yhhX" /locus_tag="STM3545" /db_xref="GeneID:1255068" CDS complement(3714123..3715160) /gene="yhhX" /locus_tag="STM3545" /note="similar to E. coli putative regulator (AAC76465.1); Blastp hit to AAC76465.1 (345 aa), 92% identity in aa 1 - 345" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_462446.1" /db_xref="GeneID:1255068" /translation="MTLHCAFIGFGKSTTRYHLPYVLNRKDTWHVAHIFRRHAKPEEQ APQYSHIHFTSDLDEVLGDPQVKLVIVCTHADSHFEYAKRALEAGKNVLVEKPFTPTL AEAKVLFDLARSKGLTVTPYQNRRFDSCFLTAKKAIESGKLGKIVEVESHFDYYRPVA ETKPGLPQDGAFYGLGVHTMDQIISLFGRPDHVAYDIRSLRNKANPDDTFEAQLFYGD LKAIVKTSHLVKIDYPKFIVHGTKGSFVKYGIDQQETSLKANIMPGEPGFAADESVGV LEYVNDDGVTVKEEVKPETGDYGRVYDALYQTLTVGTPNYVKESEVLTNLEILERAFE QATPATITLAK" misc_feature complement(3714126..3715157) /gene="yhhX" /locus_tag="STM3545" /note="putative oxidoreductase; Provisional; Region: PRK10206" /db_xref="CDD:182305" regulatory complement(3715167..3715172) /regulatory_class="ribosome_binding_site" /gene="yhhX" /locus_tag="STM3545" /note="putative RBS for yhhX; RegulonDB:STMS1H003536" gene 3715616..3716117 /gene="yhhY" /locus_tag="STM3546" /db_xref="GeneID:1255069" regulatory 3715616..3715621 /regulatory_class="ribosome_binding_site" /gene="yhhY" /locus_tag="STM3546" /note="putative RBS for yhhY; RegulonDB:STMS1H003537" CDS 3715629..3716117 /gene="yhhY" /locus_tag="STM3546" /note="similar to E. coli orf, hypothetical protein (AAC76466.1); Blastp hit to AAC76466.1 (162 aa), 82% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="putative transferase" /protein_id="NP_462447.1" /db_xref="GeneID:1255069" /translation="MSEIVIRHAEPKDYDAIRQIHAQPEVYHNMLQVPHPSLEMWQAR LTEQAGVKQLVACIDDIVVGHLSIQVTQRPRRSHVADFGICVDARWHNRGIASALIRT MIDMCDNWLRVDRIELTVFVDNEPAVAVYKKYGFEIEGTGKKYGLRNGEYVDAYFMAR VK" misc_feature 3715629..3716114 /gene="yhhY" /locus_tag="STM3546" /note="N-acetyltransferase; Region: PRK10140" /db_xref="CDD:182263" misc_feature order(3715878..3715886,3715914..3715919) /gene="yhhY" /locus_tag="STM3546" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 3716376..3717596 /locus_tag="STM3547" /db_xref="GeneID:1255070" regulatory 3716376..3716381 /regulatory_class="ribosome_binding_site" /locus_tag="STM3547" /note="putative RBS for STM3547; RegulonDB:STMS1H003538" CDS 3716382..3717596 /locus_tag="STM3547" /note="ORF 408 (gi|4456874)" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator of sugar metabolism" /protein_id="NP_462448.3" /db_xref="GeneID:1255070" /translation="MKFERHHRILKELSISGVVKVSNLAKSLKVTKETIRSDLNELAG QGYLTRCHGGAFITLDSLDNVAKNEIAYVLEKYESAQKIKKGLSAMKNNVCVIGSFNV DIISYLPRLPSTGESLLADKFIFSPGGKGCNQALAASYADSDVHFITKVGSDHFSDYA INFINSSKIHKSVIYQTKETQTGTATIMVNGDTGDNVIAIYPGANMTISPDEITIQKE AIVHSDIVLVQLETNYEALQQTIRLAQKNDIPVIINPAPYNDMVNTIIDNIDYITPNE TEAGLLANMAVNDIESAKCAAKIIHQKGVKNTIITLGSKGSLAYDGTQFIYSPAFPAV VKNTAGAGDAFNGALASGLAKGKSLASALCYASAFASLAVETPNASDMPENDSVLHRI QGSHYKQTISTH" misc_feature 3716391..>3716546 /locus_tag="STM3547" /note="DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]; Region: GlpR; COG1349" /db_xref="CDD:440960" misc_feature 3716658..3717530 /locus_tag="STM3547" /note="Ribokinase catalyses the phosphorylation of ribose to ribose-5-phosphate using ATP. This reaction is the first step in the ribose metabolism. It traps ribose within the cell after uptake and also prepares the sugar for use in the synthesis of nucleotides...; Region: ribokinase; cd01174" /db_xref="CDD:238579" misc_feature order(3716682..3716684,3716688..3716690,3716763..3716771, 3716778..3716780,3716934..3716936,3716940..3716942, 3716973..3716975,3716979..3716981,3717072..3717074, 3717396..3717401,3717408..3717410,3717516..3717518) /locus_tag="STM3547" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238579" misc_feature order(3716691..3716693,3716697..3716699,3716712..3716732, 3716769..3716771,3716931..3716933,3716937..3716945, 3716964..3716987,3717150..3717152) /locus_tag="STM3547" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238579" misc_feature order(3717204..3717206,3717312..3717320,3717327..3717329, 3717366..3717368,3717384..3717386,3717393..3717395, 3717402..3717407,3717414..3717416,3717480..3717482, 3717489..3717494,3717501..3717503) /locus_tag="STM3547" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238579" gene 3717605..3718373 /locus_tag="STM3548" /db_xref="GeneID:1255071" regulatory 3717605..3717610 /regulatory_class="ribosome_binding_site" /locus_tag="STM3548" /note="putative RBS for STM3548; RegulonDB:STMS1H003539" CDS 3717612..3718373 /locus_tag="STM3548" /note="ORF 245 (gi|4456875)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462449.1" /db_xref="GeneID:1255071" /translation="MNNTQKKLKVLFIGESWHIHMIHSKGYDSFTSSKYEEGATWLLE CLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKP NALESIKEYVKNGGGLLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDGDDRVEKPE GICAEAVSPEHPVVNGFSDYPVFLGYNQAVARDDADVVLTINNDPLLVFGEYQQGKTA CFMSDCSPHWGTQQFMSWPFYTDLWVNTLQFIARK" misc_feature 3717636..3718361 /locus_tag="STM3548" /note="Putative glutamine amidotransferase; Region: GATase1_like; pfam07090" /db_xref="CDD:399821" gene 3718421..3719398 /locus_tag="STM3549" /db_xref="GeneID:1255072" regulatory 3718421..3718426 /regulatory_class="ribosome_binding_site" /locus_tag="STM3549" /note="putative RBS for STM3549; RegulonDB:STMS1H003540" CDS 3718427..3719398 /locus_tag="STM3549" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462450.1" /db_xref="GeneID:1255072" /translation="MNKNKYSTPLLMLATILAGMLSPMQSAVNGQLGHWLQDGNACAV ISFASGLVVMFFIIIARKETRQQFASIPTLIKKRKIPLWNWFAGLCGAMVVFSEGASA SALGVATFQTALISALLLSGLLCDRFGIGVEEKKYFTPWRITGALFAVIATIFVVSPQ WHSTSFILLAILPFLAGLLAGWQPAGNAKVAEATGSMLVSITWNFIVGFCVLGAALAI RIALGHVTIQLPDTWWMYLGGPLGLLSIGLMAILVRGLGLLMLGVASTAGQLLGSVLI DELIPSLGNTVYLVTIIGTLFALVGAIVTTIPEYRASKMAQRIEVSE" misc_feature 3718454..3718891 /locus_tag="STM3549" /note="Putative inner membrane exporter, YdcZ; Region: DMT_YdcZ; pfam04657" /db_xref="CDD:428052" misc_feature 3718925..3719350 /locus_tag="STM3549" /note="Uncharacterized membrane protein YdcZ, DUF606 family [Function unknown]; Region: ydcZ; COG3238" /db_xref="CDD:442470" gene 3719384..3720429 /locus_tag="STM3550" /db_xref="GeneID:1255073" regulatory 3719384..3719389 /regulatory_class="ribosome_binding_site" /locus_tag="STM3549" /note="putative RBS for STM3550; RegulonDB:STMS1H003541" CDS 3719395..3720429 /locus_tag="STM3550" /note="similar to E. coli putative hydrolase (AAC76404.1); Blastp hit to AAC76404.1 (292 aa), 28% identity in aa 24 - 289, 71% identity in aa 7 - 20" /codon_start=1 /transl_table=11 /product="putative phosphotriesterase" /protein_id="NP_462451.1" /db_xref="GeneID:1255073" /translation="MKGFLQTVTGPVAHTDMGLTLPHEHLFNDLSSVVDEPHYAFSQQ LVGKKVSADLQWGLKHDPYCCADNMDRKEIDDVIFEINNFMSLGGRTIVDATGSESIG RDASALREVALKTGLNIVASSGPYLEKFESTRIHKPVELLASLIDKELNQGIGETDIR AGMIGEIGVSPAFTQAERNSLRAASLAQCNNPHTAMNIHMPGWLRLGDEVLDIVLEEM NVSPAKVSLAHSDPSGKDVVYQRKMLDRGVWLEFDMIGLDITFPKEGVAPGVQETADA VANLIALGYADQIVLSHDVFLKQMWAKNGGNGWGFVPNVFLAYLAARGVDNDTLRKLC IDNPARLLTA" misc_feature 3719401..3720426 /locus_tag="STM3550" /note="Predicted metal-dependent hydrolase, phosphotriesterase family [General function prediction only]; Region: Php; COG1735" /db_xref="CDD:441341" gene complement(3720474..3722232) /gene="ggt" /locus_tag="STM3551" /db_xref="GeneID:1255074" CDS complement(3720474..3722216) /gene="ggt" /locus_tag="STM3551" /EC_number="2.3.2.2" /note="similar to E. coli gamma-glutamyltranspeptidase (AAC76472.1); Blastp hit to AAC76472.1 (580 aa), 91% identity in aa 2 - 580" /codon_start=1 /transl_table=11 /product="gamma-glutamyltranspeptidase" /protein_id="NP_462452.1" /db_xref="GeneID:1255074" /translation="MKPTFMRWVAIAALLAGGTFSAVANPPVAPPVSYGVEEDVFHPV RATQGMVASVDAMATQVGVDILKQGGNAVDAAVAVGYALAVTHPQAGNLGGGGFMLLR TKDGATTAIDFREMAPAGATRDMFLDDQGNADAKKSLTSHLASGTPGTVAGFSLALEK YGTMPLNKVVRPAMKLAEEGFVVNDALANDLKTYGSEVILNHENSKAIFWKDGEPLKK GDKLVQKNLAKSLEMIAENGPDAFYKGAIADQIAGEMQKNGGLMTKEDLANYKAVERT PISGDYRGYQVFSMPPPSSGGIHIVQILNILENFDMKKYGFGSADAMQIMAEAEKYAY ADRSEYLGDPDFVKVPWQALTHKAYAKTLADQIDINKAKPSSQIKPGKLAPYESNQTT HFSVVDKDGNAVAVTYTLNTTFGTGIVAGNTGILLNNQMDDFSAKPGVPNVYGLVGGD ANAVGPKKRPLSSMSPTIVVKEGKTWLVTGSPGGSRIITTVLQMVVNSIDFGMNVAEA TNAPRFHHQWLPDELRVEKGFSPDTLKLLEQKGQKVALKEAMGSTQSIMVGPDGELYG ASDPRSVDDLTAGY" misc_feature complement(3720477..3722216) /gene="ggt" /locus_tag="STM3551" /note="gamma-glutamyltranspeptidase; Reviewed; Region: ggt; PRK09615" /db_xref="CDD:181992" regulatory complement(3722227..3722232) /regulatory_class="ribosome_binding_site" /gene="ggt" /locus_tag="STM3551" /note="putative RBS for ggt; RegulonDB:STMS1H003542" gene 3722330..3722758 /gene="yhhA" /locus_tag="STM3552" /db_xref="GeneID:1255075" regulatory 3722330..3722335 /regulatory_class="ribosome_binding_site" /gene="yhhA" /locus_tag="STM3552" /note="putative RBS for yhhA; RegulonDB:STMS1H003543" CDS 3722342..3722758 /gene="yhhA" /locus_tag="STM3552" /note="similar to E. coli orf, hypothetical protein (AAC76473.1); Blastp hit to AAC76473.1 (146 aa), 66% identity in aa 1 - 146" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_462453.1" /db_xref="GeneID:1255075" /translation="MKRLLLITALLPFAVLAQPINTMNNPNQPGYQIPSQQRMQTQMQ TQQIQQQGMLKQQMQTQARSQQQNLQSQLNANTQRVQQGQPGNGMLGQQTLPNTQGGM LSGSGNPDRMLNHSQPMLQQDSGTPQPDIPLKTISP" misc_feature 3722342..3722755 /gene="yhhA" /locus_tag="STM3552" /note="DUF2756 family protein; Region: PRK10350" /db_xref="CDD:182398" gene complement(3722771..3723524) /gene="ugpQ" /locus_tag="STM3553" /db_xref="GeneID:1255076" CDS complement(3722771..3723511) /gene="ugpQ" /locus_tag="STM3553" /EC_number="3.1.4.46" /note="similar to E. coli glycerophosphodiester phosphodiesterase, cytosolic (AAC76474.1); Blastp hit to AAC76474.1 (247 aa), 87% identity in aa 1 - 244" /codon_start=1 /transl_table=11 /product="cytosolic glycerophosphodiester phosphodiesterase" /protein_id="NP_462454.1" /db_xref="GeneID:1255076" /translation="MSNWPYPHIVAHRGGGKLAPENTLAAIDVGARYGHTMIEFDAKL SKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDAGGWFSGEFKGEPLPLLSQVAE RCRKHGMMANIEIKPTTGSGRLTGRVVALAARELWAGMTPPLLSSFEIEALEAAQAAA PELPRGLLLDKWREDWRELTTRLGCVSLHLNHKLLDETRVQEIKAAGLRILVYTVNQP QRAAELLRWGVDCICTDRIDDIGPHFQF" misc_feature complement(3722780..3723511) /gene="ugpQ" /locus_tag="STM3553" /note="cytoplasmic glycerophosphodiester phosphodiesterase; Provisional; Region: ugpQ; PRK09454" /db_xref="CDD:236524" misc_feature complement(order(3722873..3722875,3723074..3723076, 3723170..3723172,3723350..3723352,3723389..3723391, 3723395..3723397,3723476..3723478)) /gene="ugpQ" /locus_tag="STM3553" /note="putative active site [active]" /db_xref="CDD:176505" misc_feature complement(order(3723350..3723352,3723476..3723478)) /gene="ugpQ" /locus_tag="STM3553" /note="catalytic site [active]" /db_xref="CDD:176505" misc_feature complement(order(3723170..3723172,3723389..3723391, 3723395..3723397)) /gene="ugpQ" /locus_tag="STM3553" /note="putative metal binding site [ion binding]; other site" /db_xref="CDD:176505" gene complement(3723508..3724588) /gene="ugpC" /locus_tag="STM3554" /db_xref="GeneID:1255077" CDS complement(3723508..3724578) /gene="ugpC" /locus_tag="STM3554" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of sn-glycerol 3-phosphate transport system (AAC76475.1); Blastp hit to AAC76475.1 (369 aa), 88% identity in aa 14 - 369" /codon_start=1 /transl_table=11 /product="sn-glycerol 3-phosphate transport protein" /protein_id="NP_462455.1" /db_xref="GeneID:1255077" /translation="MAGLKLQAVTKSWDGKTQVIQPLTLDVADGEFIVMVGPSGCGKS TLLRMVAGLERVTSGDIWIDRKRVTEMEPKDRGIAMVFQNYALYPHMSVEENMAWGLK IRGMSKAHIEERVREAARILELDGLLKRRPRELSGGQRQRVAMGRAIVREPAVFLFDE PLSNLDAKLRVQMRLELQHLHRRLRTTSLYVTHDQVEAMTLAQRVMVMNKGVAEQIGT PVEVYEKPASRFVASFIGSPAMNLLDGVISASGDRFELPGGLALPIGADYRGHAGRNM TLGIRPEHIALSSQAEGGVPLTVDTLEILGADNLAHGRWGDQKLVVRLAHQQRPAAGS TLWLHLPEHQRHLFDGETGQRV" misc_feature complement(3723511..3724578) /gene="ugpC" /locus_tag="STM3554" /note="sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC; Region: ugpC; PRK11650" /db_xref="CDD:236947" misc_feature complement(3724447..3724470) /gene="ugpC" /locus_tag="STM3554" /note="Walker A/P-loop; other site" /db_xref="CDD:213268" misc_feature complement(order(3724000..3724002,3724099..3724104, 3724330..3724332,3724444..3724452,3724456..3724461)) /gene="ugpC" /locus_tag="STM3554" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213268" misc_feature complement(3724330..3724341) /gene="ugpC" /locus_tag="STM3554" /note="Q-loop/lid; other site" /db_xref="CDD:213268" misc_feature complement(3724147..3724176) /gene="ugpC" /locus_tag="STM3554" /note="ABC transporter signature motif; other site" /db_xref="CDD:213268" misc_feature complement(3724099..3724116) /gene="ugpC" /locus_tag="STM3554" /note="Walker B; other site" /db_xref="CDD:213268" misc_feature complement(3724081..3724092) /gene="ugpC" /locus_tag="STM3554" /note="D-loop; other site" /db_xref="CDD:213268" misc_feature complement(3723994..3724014) /gene="ugpC" /locus_tag="STM3554" /note="H-loop/switch region; other site" /db_xref="CDD:213268" regulatory complement(3723519..3723524) /regulatory_class="ribosome_binding_site" /gene="ugpQ" /locus_tag="STM3553" /note="putative RBS for ugpQ; RegulonDB:STMS1H003544" gene complement(3724580..3725439) /gene="ugpE" /locus_tag="STM3555" /db_xref="GeneID:1255078" CDS complement(3724580..3725425) /gene="ugpE" /locus_tag="STM3555" /note="ABC superfamily (membrane); similar to E. coli sn-glycerol 3-phosphate transport system, integral membrane protein (AAC76476.1); Blastp hit to AAC76476.1 (281 aa), 91% identity in aa 1 - 281" /codon_start=1 /transl_table=11 /product="sn-glycerol 3-phosphate transport protein" /protein_id="NP_462456.1" /db_xref="GeneID:1255078" /translation="MIENRRGLTIFSHTMLILGIAVILFPLYVAFVAATLDDRAVFET PMTLLPGTQLLENIKTIWVNGVGVNSAPFWLMMLNSFIMAFSITVGKITVSMLSAFAI VWFRFPLRNLFFWMIFITLMLPVEVRIFPTVEVIANLKMLDSYAGLTLPLMASATATF LFRQFFMTLPDELVEAARIDGASPMRFFRDIVLPLSKTNLAALFVITFIYGWNQYLWP LLIITDVNLGTAVAGIKGMIATGEGTTQWNQVMAAMLLTLIPPVVIVLAMQRAFVRGL VDSEK" misc_feature complement(3724583..3725425) /gene="ugpE" /locus_tag="STM3555" /note="sn-glycerol-3-phosphate ABC transporter permease UgpE; Region: PRK10973" /db_xref="CDD:182875" misc_feature complement(order(3724772..3724789,3725027..3725071)) /gene="ugpE" /locus_tag="STM3555" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(3724841..3724843,3724853..3724858, 3724874..3724912)) /gene="ugpE" /locus_tag="STM3555" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(3724583..3724588) /regulatory_class="ribosome_binding_site" /gene="ugpE" /locus_tag="STM3555" /note="putative RBS for ugpC; RegulonDB:STMS1H003545" gene complement(3725422..3726325) /gene="ugpA" /locus_tag="STM3556" /db_xref="GeneID:1255079" CDS complement(3725422..3726309) /gene="ugpA" /locus_tag="STM3556" /note="ABC superfamily (membrane); similar to E. coli sn-glycerol 3-phosphate transport system, integral membrane protein (AAC76477.1); Blastp hit to AAC76477.1 (295 aa), 93% identity in aa 1 - 295" /codon_start=1 /transl_table=11 /product="sn-glycerol 3-phosphate transport protein" /protein_id="NP_462457.1" /db_xref="GeneID:1255079" /translation="MSSSRPVFRSRWLPYLLVAPQLVITVIFFIWPAGEALWYSLQSV DPFGFSSQFVGLENFVALFHDSYYLDAFWTTIKFSALVTFSGLLVSLFFAALVDYVVR GSRFYQTLMLLPYAVAPAVAAVLWIFLFNPGRGLITHFLGEFGYDWNHAQNSGQAMFL VVFASVWKQISYNFLFFFAALQSIPRSLVEAAAIDGAGPIRRFFRLSLPLIAPVSFFL LVVNLVYAFFDTFPVIDAATAGGPVQATTTLIYKIYREGFTGLDLSASAAQSVVLMFL VIILTVVQFRYVESKVRYQ" misc_feature complement(3725425..3726264) /gene="ugpA" /locus_tag="STM3556" /note="sn-glycerol-3-phosphate ABC transporter permease UgpA; Region: PRK10561" /db_xref="CDD:182550" misc_feature complement(order(3725476..3725481,3725488..3725493, 3725500..3725505,3725509..3725514,3725521..3725526, 3725554..3725559,3725596..3725601,3725617..3725628, 3725647..3725649,3725656..3725661,3725701..3725703, 3725752..3725754,3725761..3725766,3725776..3725778, 3725782..3725787,3725794..3725796,3725800..3725802, 3725809..3725814,3725929..3725931,3725935..3725940, 3725947..3725976,3725980..3725991,3726019..3726021, 3726031..3726036,3726043..3726048)) /gene="ugpA" /locus_tag="STM3556" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(3725611..3725628,3725929..3725973)) /gene="ugpA" /locus_tag="STM3556" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(3725524..3725526,3725554..3725556, 3725563..3725565,3725599..3725601,3725827..3725829, 3725929..3725931)) /gene="ugpA" /locus_tag="STM3556" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(3725680..3725682,3725692..3725697, 3725713..3725751)) /gene="ugpA" /locus_tag="STM3556" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(3725434..3725439) /regulatory_class="ribosome_binding_site" /gene="ugpE" /locus_tag="STM3555" /note="putative RBS for ugpE; RegulonDB:STMS1H003546" regulatory complement(3726320..3726325) /regulatory_class="ribosome_binding_site" /gene="ugpA" /locus_tag="STM3556" /note="putative RBS for ugpA; RegulonDB:STMS1H003547" gene complement(3726373..3727699) /gene="ugpB" /locus_tag="STM3557" /db_xref="GeneID:1255080" CDS complement(3726373..3727689) /gene="ugpB" /locus_tag="STM3557" /note="ABC superfamily (peri_perm); similar to E. coli sn-glycerol 3-phosphate transport system; periplasmic binding protein (AAC76478.1); Blastp hit to AAC76478.1 (438 aa), 91% identity in aa 1 - 438" /codon_start=1 /transl_table=11 /product="sn-glycerol 3-phosphate transport protein" /protein_id="NP_462458.1" /db_xref="GeneID:1255080" /translation="MISLRHTALGLALSLAFTGQALAVTTIPFWHSMEGELGKEVDSL AQRFNQANPDYKIVPVYKGNYEQNLSAGIAAFRTGNAPAILQVYEVGTATMMASKAIK PVYEVFKDAGINFDESQFVPTVAGYYTDAKSGHLLSQPFNSSTPVLYYNKDAFKKAGL DPEQPPKTWQELADYTAKLRAAGMKCGYASGWQGWIQLENFSAWNGLPFASKNNGFDG TDAVLEFNKPEQVKHIALLEEMNKKGDFSYVGRKDESTEKFYNGDCAMTTASSGSLAN IRQYAKFNYGVGMMPYDADIKGAPQNAIIGGASLWVMQGKDKETYTGVAKFLDFLAKP ENAAEWHQKTGYLPITTAAYELTREQGYYDKNPGADIATRQMLNKPPLPFTKGLRLGN MPQIRTIVDEELESVWTGKKTPQQALDTAVDRGNQLLRRFEKASKS" misc_feature complement(3726379..3727689) /gene="ugpB" /locus_tag="STM3557" /note="sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB; Region: PRK10974" /db_xref="CDD:182876" misc_feature complement(order(3726499..3726501,3726652..3726654, 3726769..3726774,3726880..3726882,3727258..3727260, 3727264..3727266,3727423..3727428,3727495..3727497)) /gene="ugpB" /locus_tag="STM3557" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270451" regulatory complement(3727694..3727699) /regulatory_class="ribosome_binding_site" /gene="ugpB" /locus_tag="STM3557" /note="putative RBS for ugpB; RegulonDB:STMS1H003548" gene complement(3727948..3728322) /locus_tag="STM3558" /db_xref="GeneID:1255081" CDS complement(3727948..3728316) /locus_tag="STM3558" /codon_start=1 /transl_table=11 /product="homology to death -on-curing protein of phage P1" /protein_id="NP_462459.1" /db_xref="GeneID:1255081" /translation="MTLQLISAEEIIQFHDRLLRVTPGVTGMPDPGRAEALMYRVLKQ IEYEGVTDVWLLAAMHLLAISRGHIFNDGNKRTALFITLLFLKRNGISLAANPDFVDM TVDAAAGRLTLEQIAVRLRA" misc_feature complement(3727951..3728316) /locus_tag="STM3558" /note="Prophage maintenance system killer protein [Mobilome: prophages, transposons]; Region: Doc; COG3654" /db_xref="CDD:442871" gene complement(3728313..3728548) /gene="yhhV" /locus_tag="STM3559" /db_xref="GeneID:1255082" CDS complement(3728313..3728540) /gene="yhhV" /locus_tag="STM3559" /note="hypothetical protein in livF 5'region. (SW:YHHV_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462460.1" /db_xref="GeneID:1255082" /translation="MFMRTVNYSEARQNLAEVLESAVTGGPVTITRRGHKSAVIISAE EFERYQTARMDDEFAAIMAVHGNELRELADK" misc_feature complement(<3728391..3728534) /gene="yhhV" /locus_tag="STM3559" /note="Antitoxin component YafN of the YafNO toxin-antitoxin module, PHD/YefM family [Defense mechanisms]; Region: StbD; COG2161" /db_xref="CDD:441764" regulatory complement(3728317..3728322) /regulatory_class="ribosome_binding_site" /gene="yhhV" /locus_tag="STM3559" /note="putative RBS for STM3558; RegulonDB:STMS1H003549" regulatory complement(3728543..3728548) /regulatory_class="ribosome_binding_site" /gene="yhhV" /locus_tag="STM3559" /note="putative RBS for yhhV; RegulonDB:STMS1H003550" gene complement(3728666..3729389) /gene="livF" /locus_tag="STM3560" /db_xref="GeneID:1255083" CDS complement(3728666..3729379) /gene="livF" /locus_tag="STM3560" /note="ABC superfamily (atp_bind); high-affinity branched-chain amino acid transport ATP-binding protein LIVF. (SW:LIVF_SALTY)" /codon_start=1 /transl_table=11 /product="high-affinity branched-chain amino acid transporter" /protein_id="NP_462461.1" /db_xref="GeneID:1255083" /translation="MEKTMLTFEKVSAHYGKIQALHDVSLHINQGEIVTLIGANGAGK TTLLGTLCGDPRASSGRVVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLA MGGFFAERDRFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLS DTGDALLANEAVRSAYLGG" misc_feature complement(3728669..3729379) /gene="livF" /locus_tag="STM3560" /note="high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF; Region: livF; PRK11614" /db_xref="CDD:183231" gene complement(3729381..3730161) /gene="livG" /locus_tag="STM3561" /db_xref="GeneID:1255084" CDS complement(3729381..3730148) /gene="livG" /locus_tag="STM3561" /note="ABC superfamily (atp_bind); high-affinity branched-chain amino acid transport ATP-binding protein LIVG. (SW:LIVG_SALTY)" /codon_start=1 /transl_table=11 /product="high-affinity branched-chain amino acid transporter" /protein_id="NP_462462.1" /db_xref="GeneID:1255084" /translation="MSQPLLAVNGLMMRFGGLLAVNNVSLELREREIVSLIGPNGAGK TTVFNCLTGFYKPTGGTITLRERHLEGLPGQQIARMGVVRTFQHVRLFREMTVIENLL VAQHQQLKTGLFSGLLKTPAFRRAQSEALDRAATWLERIGLLEHANRQASNLAYGDQR RLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNHHNTTILLIEHDMKLVM GISDRIYVVNQGTPLANGTPEEIRNNPDVIRAYLGEA" misc_feature complement(3729384..3730148) /gene="livG" /locus_tag="STM3561" /note="leucine/isoleucine/valine transporter ATP-binding subunit; Provisional; Region: livG; PRK11300" /db_xref="CDD:183080" regulatory complement(3729384..3729389) /regulatory_class="ribosome_binding_site" /gene="livF" /locus_tag="STM3560" /note="putative RBS for livF; RegulonDB:STMS1H003551" gene complement(3730145..3731439) /gene="livM" /locus_tag="STM3562" /db_xref="GeneID:1255085" CDS complement(3730145..3731422) /gene="livM" /locus_tag="STM3562" /note="ABC superfamily (membrane); high-affinity branched-chain amino acid transport system permeaseprotein LIVM. (SW:LIVM_SALTY)" /codon_start=1 /transl_table=11 /product="high-affinity branched-chain amino acid transporter" /protein_id="NP_462463.1" /db_xref="GeneID:1255085" /translation="MKPMHIAMALFSAAMFFVLAGVFMGVQLELDGTKLVVDTAADIR WQWIFIGTAVVFFFQLLRPMFQKAVKHVSGPKFILPAIDGSTVKQKLFLMALLVIAVA WPFMVSRGSVDIATMTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYY GLGFWTCLPLAGLVSAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGG PNGISQIPKPTLFGLEFSRSTREGGWDTFSNFFGVKYDPSDRVIFLYLVALLLVVLSL FVINRLLRMPLGRAWEALREDEIACRSLGLSPTRIKLTAFTISAAFAGFAGTLFAARQ GFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAVLLVVSRELMRDFNEYSMLMLGG LMVLMMIWRPQGLLPMTRPQLKLKSGQAKGEQA" misc_feature complement(3730166..3731422) /gene="livM" /locus_tag="STM3562" /note="leucine/isoleucine/valine transporter permease subunit; Provisional; Region: livM; PRK11301" /db_xref="CDD:236896" regulatory complement(3730156..3730161) /regulatory_class="ribosome_binding_site" /gene="livG" /locus_tag="STM3561" /note="putative RBS for livG; RegulonDB:STMS1H003552" gene complement(3731419..3732356) /gene="livH" /locus_tag="STM3563" /db_xref="GeneID:1255086" CDS complement(3731419..3732345) /gene="livH" /locus_tag="STM3563" /note="ABC superfamily (membrane); high-affinity branched-chain amino acid transport system permeaseprotein LIVH. (SW:LIVH_SALTY)" /codon_start=1 /transl_table=11 /product="high-affinity branched-chain amino acid transporter" /protein_id="NP_462464.1" /db_xref="GeneID:1255086" /translation="MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHG EVYMIGSYVSFMIIAALMMMGIDTSWLLVAAGFIGAIIIASAYGWSIERVAYRPVRNS KRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWIVGSSENFSASITTMQAVI WIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAV AGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGVAEALSSAYLS TEYKDVVSFALLILVLLVMPTGILGRPEVEKV" misc_feature complement(3731422..3732345) /gene="livH" /locus_tag="STM3563" /note="high-affinity branched-chain amino acid ABC transporter permease LivH; Region: PRK10740" /db_xref="CDD:182689" misc_feature complement(3731716..3731772) /gene="livH" /locus_tag="STM3563" /note="TM-ABC transporter signature motif [active]" /db_xref="CDD:119324" regulatory complement(3731434..3731439) /regulatory_class="ribosome_binding_site" /gene="livH" /locus_tag="STM3563" /note="putative RBS for livM; RegulonDB:STMS1H003553" regulatory complement(3732351..3732356) /regulatory_class="ribosome_binding_site" /gene="livH" /locus_tag="STM3563" /note="putative RBS for livH; RegulonDB:STMS1H003554" gene complement(3732405..3733570) /gene="livK" /locus_tag="STM3564" /db_xref="GeneID:1255087" CDS complement(3732405..3733514) /gene="livK" /locus_tag="STM3564" /note="ABC superfamily (bind_prot); leucine-specific binding protein precursor (LS-BP). (SW:LIVK_SALTY)" /codon_start=1 /transl_table=11 /product="high-affinity branched-chain amino acid transporter" /protein_id="NP_462465.1" /db_xref="GeneID:1255087" /translation="MKRKAKTIIAGIVALAVSQGAMADDIKVAIVGAMSGPVAQWGDM EFNGARQAIKDINAKGGIKGDKLVGVEYDDACDPKQAVAVANKIVNDGIQYVIGHLCS SSTQPASDIYEDEGILMISPGATNPELTQRGYQYIMRTAGLDSSQGPTAAKYILETVK PQRIAIIHDKQQYGEGLARSVQDGLKQGNANIVFFDGITAGEKDFSALIARLQKENID FVYYGGYYPEMGQMLRQARANGLKTQFMGPEGVGNASLSNIAGGAAEGMLVTMPKRYD QDPANKAIVEALKADKKDPSGPYVWITYAAVQSLATAMTRSASHAPLDLVKDLKANGA DTVIGPLKWDEKGDLKGFEFGVFQWHADGSSTVAK" misc_feature complement(3732408..3733514) /gene="livK" /locus_tag="STM3564" /note="high-affinity branched-chain amino acid ABC transporter substrate-binding protein; Region: PRK15404" /db_xref="CDD:237959" misc_feature complement(order(3732768..3732770,3732840..3732842, 3732996..3732998,3733143..3733148,3733209..3733217)) /gene="livK" /locus_tag="STM3564" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380565" regulatory complement(3733516..3733521) /regulatory_class="ribosome_binding_site" /gene="livK" /locus_tag="STM3564" /note="putative RBS for livK; RegulonDB:STMS1H003555" regulatory complement(3733543..3733551) /regulatory_class="minus_10_signal" /gene="livK" /locus_tag="STM3564" /note="putative -10_signal for livK; RegulonDB:STMLTH004604" regulatory complement(3733562..3733570) /regulatory_class="minus_35_signal" /gene="livK" /locus_tag="STM3564" /note="putative -35_signal for livK; RegulonDB:STMLTH004604" gene 3733936..3734319 /gene="yhhK" /locus_tag="STM3565" /db_xref="GeneID:1255088" CDS 3733936..3734319 /gene="yhhK" /locus_tag="STM3565" /note="similar to E. coli orf, hypothetical protein (AAC76484.1); Blastp hit to AAC76484.1 (127 aa), 82% identity in aa 1 - 126" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_462466.1" /db_xref="GeneID:1255088" /translation="MKLTILRLEHFSAQDQIDLGKIWPEYSASSLSVDETHRIYAARF NERLLGAVRVTLSGTQGALDSLRVREITRRRGVGQYLVEEVIRDNPNVSSWWMADVGV EDRSVMAAFMQALGFTAQHDGWEKR" misc_feature 3733936..3734313 /gene="yhhK" /locus_tag="STM3565" /note="aspartate 1-decarboxylase autocleavage activator PanM; Region: matur_PanM; NF033213" /db_xref="CDD:411104" gene 3734292..3734431 /locus_tag="STM3566" /db_xref="GeneID:1255089" regulatory 3734292..3734297 /regulatory_class="ribosome_binding_site" /locus_tag="STM3566" /note="putative RBS for STM3566; RegulonDB:STMS1H003556" CDS 3734297..3734431 /locus_tag="STM3566" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462467.1" /db_xref="GeneID:1255089" /translation="MTAGRSAKRKPDGADAYPAYMPGEKIKTTSQFSKNFALQAGGKL " gene complement(3734514..3735715) /gene="livJ" /locus_tag="STM3567" /db_xref="GeneID:1255090" CDS complement(3734514..3735611) /gene="livJ" /locus_tag="STM3567" /note="ABC superfamily (bind_prot); leu/ile/val/thr-binding protein precursor (LIVT-BP). (SW:LIVJ_SALTY)" /codon_start=1 /transl_table=11 /product="high-affinity branched-chain amino acid transporter" /protein_id="NP_462468.1" /db_xref="GeneID:1255090" /translation="MKGKTLLAGCIALSLSHMAFADDIKVAVVGAMSGPVAQYGDQEF TGAEQAIADINAKGGIKGDKLVAVKYDDACDPKQAVAVANKVVNDGIKYVIGHLCSSS TQPASDIYEDEGILMITPAATAPELTARGYKLVLRTTGLDSDQGPTAAKYILEKVKPQ RIAIIHDKQQYGEGLARAVQDGLKKGGVNVVFFDGITAGEKDFSTLVARLKKENIDFV YYGGYHPEMGQILRQSRAAGLKTQFMGPEGVANVSLSNIAGESAEGLLVTKPKNYDQV PANKPIVDAIKAKKQDPSGAFVWTTYAALQSLQAGLNHSDDPAEIAKYLKGATVDTVM GPLSWDEKGDLKGFEFGVFDWHANGTATDAK" misc_feature complement(3734517..3735611) /gene="livJ" /locus_tag="STM3567" /note="high-affinity branched-chain amino acid ABC transporter substrate-binding protein; Region: PRK15404" /db_xref="CDD:237959" misc_feature complement(order(3734871..3734873,3734943..3734945, 3735099..3735101,3735246..3735251,3735312..3735320)) /gene="livJ" /locus_tag="STM3567" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380565" regulatory complement(3735616..3735621) /regulatory_class="ribosome_binding_site" /gene="livJ" /locus_tag="STM3567" /note="putative RBS for livJ; RegulonDB:STMS1H003557" regulatory complement(3735691..3735699) /regulatory_class="minus_10_signal" /gene="livJ" /locus_tag="STM3567" /note="putative -10_signal for livJ; RegulonDB:STMLTH004605" regulatory complement(3735707..3735715) /regulatory_class="minus_35_signal" /gene="livJ" /locus_tag="STM3567" /note="putative -35_signal for livJ; RegulonDB:STMLTH004605" protein_bind complement(3735834..3735846) /note="putative binding site for Lrp, RegulonDB: STMS1H000254" /bound_moiety="Lrp" gene complement(3735939..3736803) /gene="rpoH" /locus_tag="STM3568" /db_xref="GeneID:1255091" CDS complement(3735939..3736793) /gene="rpoH" /locus_tag="STM3568" /note="transcription of heat shock proteins induced by cytoplasmic stress; similar to E. coli RNA polymerase, sigma(32) factor; regulation of proteins induced at high temperatures (AAC76486.1); Blastp hit to AAC76486.1 (284 aa), 96% identity in aa 1 - 284; sigma H factor of RNA polymerase" /codon_start=1 /transl_table=11 /product="sigma 32" /protein_id="NP_462469.1" /db_xref="GeneID:1255091" /translation="MTKEMQNLALAPVGNLESYIRAANAWPMLSADEERALAERLHYQ GDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFNPEVGVRLV SFAVHWIKAEIHEYVLRNWRIVKVATTKAQRKLFFNLRKTKQRLGWFNQDEVEMVARE LGVSSKDVREMESRMAAQDMTFDMSSDDESDSQPMAPVLYLQDKSSNFADGIEDDNWE EQAANRLTDAMQGLDERSQDIIRARWLDEDNKSTLQELADRYGVSAERVRQLEKNAMK KLRAAIEA" misc_feature complement(3735942..3736793) /gene="rpoH" /locus_tag="STM3568" /note="RNA polymerase factor sigma-32; Reviewed; Region: PRK06596" /db_xref="CDD:235838" regulatory complement(3736798..3736803) /regulatory_class="ribosome_binding_site" /gene="rpoH" /locus_tag="STM3568" /note="putative RBS for rpoH; RegulonDB:STMS1H003558" protein_bind complement(3736892..3736907) /note="putative binding site for CRP, RegulonDB: STMS1H000111" /bound_moiety="CRP" protein_bind complement(3736896..3736906) /note="putative binding site for DnaA, RegulonDB: STMS1H000138" /bound_moiety="DnaA" protein_bind complement(3736910..3736930) /note="putative binding site for CRP, RegulonDB: STMS1H000043" /bound_moiety="CRP" protein_bind complement(3736990..3737010) /note="putative binding site for CRP, RegulonDB: STMS1H000079" /bound_moiety="CRP" gene complement(3737039..3738109) /gene="ftsX" /locus_tag="STM3569" /db_xref="GeneID:1255092" CDS complement(3737039..3738094) /gene="ftsX" /locus_tag="STM3569" /note="similar to E. coli cell division membrane protein (AAC76487.1); Blastp hit to AAC76487.1 (352 aa), 92% identity in aa 1 - 352" /codon_start=1 /transl_table=11 /product="putative integral membrane cell division protein" /protein_id="NP_462470.1" /db_xref="GeneID:1255092" /translation="MNRRDAINQIRQFGGRLDRLRKSRGGTGGGRNAPGRQKPTPKPN SRKTNVFNEQVRYAWHGALQDLKSKPLATFLTVMVIAISLTLPSVCYMVYKNVNQAAT QYYPSPQITVYLQKTLDDDAAARVVGQLQAEQGVEKVNYLSREDALGEFRNWSGFGGA LDMLEENPLPAVAVVIPKLDFQSTASLNTLRDRISQINGIDEVRMDDSWFARLAALTG LVGRVSAMIGVLMVAAVFLVIGNSVRLSIFARRDTINVQKLIGATDGFILRPFLYGGA LLGFSGAFLSLILSEILVMRLSSAVTEVAQVFGTKFDLNGLSFDECLLLLLVCSMIGW IAAWLATVQHLRHFTPD" misc_feature complement(3737042..3737953) /gene="ftsX" /locus_tag="STM3569" /note="putative protein insertion permease FtsX; Region: ftsX; PRK11026" /db_xref="CDD:182910" protein_bind complement(3737056..3737066) /gene="ftsX" /locus_tag="STM3569" /note="putative binding site for DnaA, RegulonDB: STMS1H000139" /bound_moiety="DnaA" protein_bind complement(3737080..3737090) /gene="ftsX" /locus_tag="STM3569" /note="putative binding site for DnaA, RegulonDB: STMS1H000137" /bound_moiety="DnaA" gene complement(3738087..3738766) /gene="ftsE" /locus_tag="STM3570" /db_xref="GeneID:1255093" CDS complement(3738087..3738755) /gene="ftsE" /locus_tag="STM3570" /note="similar to E. coli ATP-binding component of a membrane-associated complex involved in cell division (AAC76488.1); Blastp hit to AAC76488.1 (222 aa), 95% identity in aa 1 - 222" /codon_start=1 /transl_table=11 /product="putative ATPase involved in cell division" /protein_id="NP_462471.1" /db_xref="GeneID:1255093" /translation="MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTL LKLICGIERPSAGKIFFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAI PLIIAGASGDDIRRRVSAALDKVGLLDKARNFPIQLSGGEQQRVGIARAVVNKPAVLL ADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRQLVLSDGHLHGG LANE" misc_feature complement(3738090..3738755) /gene="ftsE" /locus_tag="STM3570" /note="cell division ATP-binding protein FtsE; Region: PRK10908" /db_xref="CDD:182829" regulatory complement(3738104..3738109) /regulatory_class="ribosome_binding_site" /gene="ftsE" /locus_tag="STM3570" /note="putative RBS for ftsX; RegulonDB:STMS1H003559" gene complement(3738758..3740250) /gene="ftsY" /locus_tag="STM3571" /db_xref="GeneID:1255094" CDS complement(3738758..3740233) /gene="ftsY" /locus_tag="STM3571" /note="similar to E. coli cell division membrane protein (AAC76489.1); Blastp hit to AAC76489.1 (497 aa), 83% identity in aa 1 - 497" /codon_start=1 /transl_table=11 /product="GTPase domain of cell division membrane protein" /protein_id="NP_462472.1" /db_xref="GeneID:1255094" /translation="MAKQKKRGFFSWLGFGDKEQKQEQTEEQQIVEEQRPVEPPVETA ADVDAQTPAHSKAETEAFAEEVVDVTEKVQESEKPQPVEPEPAAAIETAAPQIAVERE ELPLPEEVKDEAISPEEWQAEAETVEVIAAVEEEGENAAKFTDEELEAQALAAQAAEE AVMVVPPAEEDAPVEAIVQEQEKPTKEGFFARLKRSLLKTKENLGSGFISLFRGKKID DDLFEELEEQLLIADVGVETTRKIIANLTEGASRKQLKDAEALYGLLKDEMGEILAKV DEPLNIEGKTPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQL QVWGQRNNIPVIAQHTGADSASVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELK KIVRVMKKLDEEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDGTAKGGV IFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFARED" misc_feature complement(3739691..>3740128) /gene="ftsY" /locus_tag="STM3571" /note="ribonuclease E; Reviewed; Region: rne; PRK10811" /db_xref="CDD:236766" misc_feature complement(3738764..3739669) /gene="ftsY" /locus_tag="STM3571" /note="Signal recognition particle GTPase FtsY [Intracellular trafficking, secretion, and vesicular transport]; Region: FtsY; COG0552" /db_xref="CDD:440318" regulatory complement(3738761..3738766) /regulatory_class="ribosome_binding_site" /gene="ftsE" /locus_tag="STM3570" /note="putative RBS for ftsE; RegulonDB:STMS1H003560" regulatory complement(3740245..3740250) /regulatory_class="ribosome_binding_site" /gene="ftsY" /locus_tag="STM3571" /note="putative RBS for ftsY; RegulonDB:STMS1H003561" gene 3740341..3740955 /gene="yhhF" /locus_tag="STM3572" /db_xref="GeneID:1255095" regulatory 3740341..3740346 /regulatory_class="ribosome_binding_site" /gene="yhhF" /locus_tag="STM3572" /note="putative RBS for yhhF; RegulonDB:STMS1H003562" CDS 3740359..3740955 /gene="yhhF" /locus_tag="STM3572" /note="similar to E. coli orf, hypothetical protein (AAC76490.1); Blastp hit to AAC76490.1 (198 aa), 86% identity in aa 1 - 198" /codon_start=1 /transl_table=11 /product="putative methyltransferase" /protein_id="NP_462473.1" /db_xref="GeneID:1255095" /translation="MKKPTHSGSGQIRIIGGQWRGRKLPVPDSPGLRPTTDRVRETLF NWLAPVMVDAHCLDCFAGSGALGLEALSRYAAQATLLEMDRAVSQQLQKNLATLKANN ARVVNTNTLTFLSQPGTPHHVVFVDPPFRKGLLEETLQLLETQGWLADDALIYVESEV ENGLPPVPANWALYREKVAGQVAYRLYQRDAQGENDVD" misc_feature 3740359..3740952 /gene="yhhF" /locus_tag="STM3572" /note="16S rRNA m(2)G966-methyltransferase; Provisional; Region: rsmD; PRK10909" /db_xref="CDD:236793" misc_feature order(3740533..3740553,3740602..3740607,3740680..3740688, 3740737..3740739) /gene="yhhF" /locus_tag="STM3572" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 3740933..3741214 /gene="yhhL" /locus_tag="STM3573" /db_xref="GeneID:1255096" regulatory 3740933..3740938 /regulatory_class="ribosome_binding_site" /gene="yhhL" /locus_tag="STM3573" /note="putative RBS for yhhL; RegulonDB:STMS1H003563" CDS 3740942..3741214 /gene="yhhL" /locus_tag="STM3573" /note="similar to E. coli orf, hypothetical protein (AAC76491.1); Blastp hit to AAC76491.1 (89 aa), 86% identity in aa 1 - 89" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462474.3" /db_xref="GeneID:1255096" /translation="MMLINLGRLLMLFVWAFLILNLVHPFPRPLNIFVNVALVFMALM HGMQLALLKSTIPKAGPQMTTGEKIRIFLFGVFELLVWQKKFKNKK" misc_feature 3740945..3741211 /gene="yhhL" /locus_tag="STM3573" /note="DUF1145 family protein; Region: PRK10910" /db_xref="CDD:182831" gene complement(3741236..3741619) /gene="yhhM" /locus_tag="STM3574" /db_xref="GeneID:1255097" CDS complement(3741236..3741607) /gene="yhhM" /locus_tag="STM3574" /note="similar to E. coli putative receptor (AAC76492.1); Blastp hit to AAC76492.1 (119 aa), 84% identity in aa 1 - 116" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462475.1" /db_xref="GeneID:1255097" /translation="MSKPPLFFIIIIALIVVAASFRFVQQRREKAANEAAPLQQKQVV VSNKREKPVNDRRSRQQEVIPAGTSMRYEVSFKPLNGGLEKTFRLQAQQYHALTVGDQ GTLSYKGTRFVGFVSRTPDNE" misc_feature complement(3741260..3741547) /gene="yhhM" /locus_tag="STM3574" /note="Protein of unknown function (DUF2500); Region: DUF2500; pfam10694" /db_xref="CDD:431441" regulatory complement(3741614..3741619) /regulatory_class="ribosome_binding_site" /gene="yhhM" /locus_tag="STM3574" /note="putative RBS for yhhM; RegulonDB:STMS1H003564" gene 3741738..3742375 /gene="yhhN" /locus_tag="STM3575" /db_xref="GeneID:1255098" regulatory 3741738..3741743 /regulatory_class="ribosome_binding_site" /gene="yhhN" /locus_tag="STM3575" /note="putative RBS for yhhN; RegulonDB:STMS1H003565" CDS 3741749..3742375 /gene="yhhN" /locus_tag="STM3575" /note="similar to E. coli putative enzyme (AAC76493.1); Blastp hit to AAC76493.1 (208 aa), 91% identity in aa 1 - 208" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462476.1" /db_xref="GeneID:1255098" /translation="MLWSFIAVCLSAWLYVDASYRGPAWQRWVFKPVTLLLLLLLAWQ APMFDAISYLVLAGLCASLVGDALTLLPRQRLLYAVGAFFLSHLLYTIYFASQMTLSF FWPLPLALLIVGALLIAVIWTRLEELRWPVCTFIAMTLVMVWLAGELWFFRPTAPALS AFTGATLLFIGNIVWLGSHYRRRFRADNAIAAACYFAGHFLIVRSLYL" misc_feature 3741755..3742366 /gene="yhhN" /locus_tag="STM3575" /note="Uncharacterized membrane protein YhhN [Function unknown]; Region: YhhN; COG3714" /db_xref="CDD:442928" gene 3742444..3744654 /gene="zntA" /locus_tag="STM3576" /db_xref="GeneID:1255099" regulatory 3742444..3742449 /regulatory_class="ribosome_binding_site" /gene="zntA" /locus_tag="STM3576" /note="putative RBS for zntA; RegulonDB:STMS1H003566" CDS 3742456..3744654 /gene="zntA" /locus_tag="STM3576" /EC_number="3.6.1.-" /note="Pb/Cd/Zn/Hg transporting ATPase; similar to E. coli zinc-transporting ATPase (AAC76494.1); Blastp hit to AAC76494.1 (732 aa), 84% identity in aa 1 - 731" /codon_start=1 /transl_table=11 /product="P-type ATPase family" /protein_id="NP_462477.1" /db_xref="GeneID:1255099" /translation="MSTPDTDGKKVPPFTSFRLAPAIQKADSCCCEEHCASSAPVSTA MAGTRYTWKISGMDCAACARKVENAVRQIRGVNQAQVLFATEKLVVDADADLRAQIEH AVQKAGYTLRSEDSRDAAPESRLKENLPLITLIIMMAISWGLEQFNHPFGQLAFIATT LVGLYPIARQALRLMKSGSWFAIETLMSVAAIGALFIGATAEAAMVLLLFLIGERLEG WAASRARKGVSALMALKPETATRLRDGVREEVAINTLRPGDIIEVAAGGRLPADGKLV SGFASFDESALTGESIPVERATGDKVPAGATSVDRLVTLEVLSEPGASAIDRILTLIE EAEERRAPIERFIDRFSRIYTPVIMVIALLVTLIPPLMFDGGWQEWIYKGLTLLLIGC PCALVISTPAAITSGLAAAARRGALIKGGAALEQLGRITQVAFDKTGTLTIGKPRVTA IHPASGISEAELLALAAAVEQGATHPLAQAIVREAQTRDLAIPTAESQRTLAGTGIEA QVNGERILICAAGKQPAAAFAGQISELENAGQTVVLVLRNETVVGVLALQDTLRDDAR DAIRDLHQLGVNGVILTGDNPRAAAAIAGELDLAFKAGLLPEDKVRAVTALNQQAPLA MVGDGINDAPAMKAASIGIAMGSGTDVALETADAALTHNRLRGLAQMITLARATHANI RQNITIALGLKAIFLVTTLLGFTGLWLAILADTGATVLVTANALRLLRKN" misc_feature 3742456..3744651 /gene="zntA" /locus_tag="STM3576" /note="Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA; Region: P_type_ZntA; NF033775" /db_xref="CDD:468183" gene 3744847..3746497 /gene="tcp" /locus_tag="STM3577" /db_xref="GeneID:1255100" regulatory 3744847..3744852 /regulatory_class="ribosome_binding_site" /gene="tcp" /locus_tag="STM3577" /note="putative RBS for tcp; RegulonDB:STMS1H003567" CDS 3744854..3746497 /gene="tcp" /locus_tag="STM3577" /note="methyl-accepting chemotaxis citrate transducer (citrate chemoreceptorprotein). (SW:MCPC_SALTY)" /codon_start=1 /transl_table=11 /product="methyl-accepting transmembrane citrate/phenol chemoreceptor" /protein_id="NP_462478.1" /db_xref="GeneID:1255100" /translation="MKNIKVITGVIATLGIFSALLLVTGILFYSAVSSDRLNFQNASA LSYQQQELGGSFQTLIETRVTINRVAIRMLKNQRDPASLDAMNTLLTNAGASLNEAEK HFNNYVNSEAIAGKDPALDAQAEASFKQMYDVLQQSIHYLKADNYAAYGNLDAQKAQD DMEQVYDQWLSQNAQLIKLASDQNQSSFTQMQWTLGIILLIVLIVLAFIWLGLQRVLL RPLQRIMAHIQTIADGDLTHEIEAEGRSEMGQLAAGLKTMQQSLIRTVSAVRDNADSI YTGAGEISAGSSDLSSRTEQQASALEETAASMEQLTATVRQNTDNARQATGLAKTASE TARKGGRVVDNVVSTMNDIAESSEKIVDITSVIDGIAFQTNILALNAAVEAARAGEQG RGFAVVAGEVRTLASRSAQAAKEIKVLIENSVSRIDTGSTQVREAGETMKEIVNAVTR VTDIMGEIASASDEQSKGIEQVAQAVSEMDSVTQQNASLVEESAAAAAALEDQANELR QAVAAFRIQKQPRREASPTTLSKGLTPQPAAEQANWESF" misc_feature 3744854..3746494 /gene="tcp" /locus_tag="STM3577" /note="Methyl-accepting chemotaxis protein (MCP), signaling domain; Region: MCP_signal; cl46910" /db_xref="CDD:481250" misc_feature order(3745760..3745765,3745772..3745777,3745784..3745786, 3745793..3745798,3745802..3745807,3745814..3745816, 3745823..3745828,3745835..3745837,3745844..3745849, 3745856..3745861,3745868..3745870,3745877..3745882, 3745886..3745891,3745901..3745903,3745907..3745912, 3745919..3745921,3745928..3745933,3745940..3745945, 3745952..3745954,3745961..3745963,3745970..3745975, 3745982..3745984,3745994..3745996,3746003..3746005, 3746024..3746026,3746036..3746038,3746045..3746047, 3746054..3746059,3746066..3746068,3746075..3746080, 3746087..3746092,3746096..3746101,3746108..3746113, 3746150..3746155,3746162..3746164,3746171..3746176, 3746183..3746185,3746192..3746197,3746201..3746206, 3746213..3746218,3746225..3746227,3746234..3746239, 3746246..3746248,3746255..3746260,3746264..3746269, 3746276..3746281,3746285..3746290,3746297..3746299, 3746306..3746311,3746318..3746320,3746327..3746332) /gene="tcp" /locus_tag="STM3577" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature 3745970..3746071 /gene="tcp" /locus_tag="STM3577" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" gene complement(3746521..3746773) /gene="yhhP" /locus_tag="STM3578" /db_xref="GeneID:1255101" CDS complement(3746521..3746766) /gene="yhhP" /locus_tag="STM3578" /note="similar to E. coli orf, hypothetical protein (AAC76495.1); Blastp hit to AAC76495.1 (81 aa), 91% identity in aa 1 - 79" /codon_start=1 /transl_table=11 /product="small ubiquitous protein required for normal growth" /protein_id="NP_462479.1" /db_xref="GeneID:1255101" /translation="MSDLFSSPDHTLDALGLRCPEPVMMVRKTVRNMQTGETLLIIAD DPATTRDIPGFCTFMEHDLLAQETEGLPYRYLLRKAH" misc_feature complement(3746524..3746766) /gene="yhhP" /locus_tag="STM3578" /note="sulfurtransferase TusA; Region: PRK00299" /db_xref="CDD:178967" misc_feature complement(order(3746695..3746697,3746701..3746712, 3746719..3746721,3746728..3746733)) /gene="yhhP" /locus_tag="STM3578" /note="CPxP motif; other site" /db_xref="CDD:239515" regulatory complement(3746768..3746773) /regulatory_class="ribosome_binding_site" /gene="yhhP" /locus_tag="STM3578" /note="putative RBS for yhhP; RegulonDB:STMS1H003568" gene 3746925..3747601 /gene="yhhQ" /locus_tag="STM3579" /db_xref="GeneID:1255102" regulatory 3746925..3746930 /regulatory_class="ribosome_binding_site" /gene="yhhQ" /locus_tag="STM3579" /note="putative RBS for yhhQ; RegulonDB:STMS1H003569" CDS 3746936..3747601 /gene="yhhQ" /locus_tag="STM3579" /note="similar to E. coli orf, hypothetical protein (AAC76496.1); Blastp hit to AAC76496.1 (221 aa), 89% identity in aa 1 - 221" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_462480.1" /db_xref="GeneID:1255102" /translation="MTPFTQSQRIKALFWLSLFHLLVIISSNYLVQLPITIFGFHTTW GAFSFPFIFLATDLTVRIFGAPLARRIIFAVMIPALLVSYVVSSLFYMGAWQGFAALA NFNLFVARIAAASFMAYALGQILDVHVFNRLRQNRRWWLAPTASTLFGNISDTLAFFF IAFWRSPDAFMAGHWMEIALVDYCFKVLISIIFFLPMYGVLLNMLLKKLADKSEISPL PAS" misc_feature 3746936..3747565 /gene="yhhQ" /locus_tag="STM3579" /note="7-cyano-7-deazaguanine/7-aminomethyl-7-deazaguanine transporter; Region: PRK11212" /db_xref="CDD:183041" gene 3747661..3748231 /locus_tag="STM3580" /db_xref="GeneID:1255103" regulatory 3747661..3747666 /regulatory_class="ribosome_binding_site" /locus_tag="STM3580" /note="putative RBS for STM3580; RegulonDB:STMS1H003570" CDS 3747674..3748231 /locus_tag="STM3580" /note="similar to E. coli orf, hypothetical protein (AAC76497.1); Blastp hit to AAC76497.1 (203 aa), 80% identity in aa 19 - 203" /codon_start=1 /transl_table=11 /product="putative inner membrane lipoprotein" /protein_id="NP_462481.1" /db_xref="GeneID:1255103" /translation="MRNLVKYAGIGLLVMGLAACDNNDTKASAESAAAESQASGQPIS LMDGKLSFSLPADMTDQSGKLGTQANNMHVYSDPTGQKAVIVIVGDNTDEALPVLANR LLEQQRSRDPQLQVVTNKSIELKGHTLQQLDSIISAKGQTAYSSIVLGKVDNQLLTIQ VTLPADNQQKAQTTAENIINTLVIK" misc_feature 3747674..3748228 /locus_tag="STM3580" /note="hypothetical protein; Provisional; Region: PRK11615" /db_xref="CDD:183232" gene complement(3748235..3749494) /gene="yhhS" /locus_tag="STM3581" /db_xref="GeneID:1255104" CDS complement(3748235..3749494) /gene="yhhS" /locus_tag="STM3581" /note="similar to E. coli putative transport (AAC76498.1); Blastp hit to AAC76498.1 (419 aa), 89% identity in aa 1 - 419" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_462482.3" /db_xref="GeneID:1255104" /translation="MIEKKTCCKNAVILMPEPVAEPALNGLRLNLRIVSIVMFNFASY LTIGLPLAVLPGYVHDAMGFSAFWAGLIISLQYFATLLSRPHAGRYADVLGPKKIVVF GLCGCFLSGLGYLLADIASAWPMISLLLLGLGRVILGIGQSFAGTGSTLWGVGVVGSL HIGRVISWNGIVTYGAMAMGAPLGVLCYAWGGLQGLALTVMGVALLAVLLALPRPSVK ANKGKPLPFRAVLGRVWLYGMALALASAGFGVIATFITLFYDAKGWDGAAFALTLFSV AFVGTRLLFPNGINRLGGLNVAMICFGVEIIGLLLVGTAAMPWMAKIGVLLTGMGFSL VFPALGVVAVKAVPPQNQGAALATYTVFMDMSLGVTGPLAGLVMTWAGVPVIYLAAAG LVAMALLLTWRLKKRPPSALPEAASSS" misc_feature complement(3748250..3749446) /gene="yhhS" /locus_tag="STM3581" /note="major facilitator superfamily transporter; Provisional; Region: PRK05122" /db_xref="CDD:235348" gene 3749572..3750633 /gene="yhhT" /locus_tag="STM3582" /db_xref="GeneID:1255105" regulatory 3749572..3749577 /regulatory_class="ribosome_binding_site" /gene="yhhT" /locus_tag="STM3582" /note="putative RBS for yhhT; RegulonDB:STMS1H003571" CDS 3749584..3750633 /gene="yhhT" /locus_tag="STM3582" /note="similar to E. coli orf, hypothetical protein (AAC76499.1); Blastp hit to AAC76499.1 (376 aa), 89% identity in aa 28 - 376" /codon_start=1 /transl_table=11 /product="putative PerM family permease" /protein_id="NP_462483.1" /db_xref="GeneID:1255105" /translation="MATAQPDKTGMHILLKLASLVIILAGIHAAADIIVQLLLALFFA IVLNPLVTWFIRRGVKRPLAITIVVVVMLIVLTALVGVLAASLNEFIAMLPKYSKELT RKVLHLQELMPFLNLHMSPERMLRGMDSDKIMLFTTTLMTGVSGAMASIVLLVMTVVF MLFEVRHVPYKLRFALNNPQIHIAGLHRALKGVSHYLALKTLLSLWTGAIIWLGLALM GIQFALMWGVLAFLLNYVPNIGSVISAVPPMIQALLFNGFYECVLVGALFLVVHMVIG NIMEPRMMGHRLGMSTLVVFLSLLVWGWLLGPVGMLLSVPLTSVCKIWMETTKGGSKL AILLGPGRPKSRLPG" misc_feature 3749584..3750615 /gene="yhhT" /locus_tag="STM3582" /note="AI-2E family transporter; Region: AI-2E_transport; cl00465" /db_xref="CDD:444921" gene 3750665..3751263 /gene="acpT" /locus_tag="STM3583" /db_xref="GeneID:1255106" regulatory 3750665..3750670 /regulatory_class="ribosome_binding_site" /gene="acpT" /locus_tag="STM3583" /note="putative RBS for acpT; RegulonDB:STMS1H003572" CDS 3750685..3751263 /gene="acpT" /locus_tag="STM3583" /note="similar to E. coli orf, hypothetical protein (AAC76500.1); Blastp hit to AAC76500.1 (195 aa), 78% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="putative phosphopantetheinyl transferase" /protein_id="NP_462484.1" /db_xref="GeneID:1255106" /translation="MYQVVLGKVSTLSAGQLPDALIAQAPQGVRRASWLAGRVLLSRA LSPLPEMVYGEQGKPAFSAGAPLWFNLSHSGDTIALLLSDEGEVGCDIEVIRPRDNWR SLANAVFSLGEHAEMEAERPEQQLAAFWRIWTRKEAIVKQRGGSAWQIVSVDSTLPSA LSVSQCQLDTLSLAVCTPTPFTLTPQTITKAL" misc_feature 3750709..3751257 /gene="acpT" /locus_tag="STM3583" /note="4'-phosphopantetheinyl transferase AcpT; Region: PRK10351" /db_xref="CDD:182399" gene 3751341..3751756 /gene="nikR" /locus_tag="STM3584" /db_xref="GeneID:1255107" regulatory 3751341..3751346 /regulatory_class="ribosome_binding_site" /gene="nikR" /locus_tag="STM3584" /note="putative RBS for nikR; RegulonDB:STMS1H003573" CDS 3751355..3751756 /gene="nikR" /locus_tag="STM3584" /note="similar to E. coli orf, hypothetical protein (AAC76506.1); Blastp hit to AAC76506.1 (133 aa), 98% identity in aa 1 - 133" /codon_start=1 /transl_table=11 /product="nickel-responsive transcriptional regulator" /protein_id="NP_462485.1" /db_xref="GeneID:1255107" /translation="MQRVTITLDDDLLETLDSLSQRRGYNNRSEAIRDILRGALAQEA TQEHGTQGFAVLSYVYEHEKRDLASRIVSTQHHHHDLSVATLHVHINHDDCLEIAVLK GDMGDVQHFADDVIAQRGVRHGHLQCLPKED" misc_feature 3751355..3751753 /gene="nikR" /locus_tag="STM3584" /note="nickel-responsive transcriptional regulator NikR; Region: PRK02967" /db_xref="CDD:235093" gene complement(3751846..3752981) /gene="yhhJ" /locus_tag="STM3585" /db_xref="GeneID:1255108" CDS complement(3751846..3752970) /gene="yhhJ" /locus_tag="STM3585" /note="atp_bind/membrane; similar to E. coli putative transporter (AAC76510.1); Blastp hit to AAC76510.1 (375 aa), 92% identity in aa 2 - 375" /codon_start=1 /transl_table=11 /product="putative ABC superfamily transport protein" /protein_id="NP_462486.1" /db_xref="GeneID:1255108" /translation="MRGLRNIYNLGVKELRSLLGDKAMLALIVFAFTISVYSSATVLP GSLHLAPIAIADMDQSQLSNRIVNSFYRPWFLPPEMITATEMDAGLDAGRYTFAVNIP PNFQRDVLAGRQPDIQVNVDATRMSQAFTGNSYIQNIISGEVNSFVARARGDNVQPVS LEIRMRFNPNLDPAWFGGVMAIINNITMLAIVLTGSALIREREHGTVEHLLVMPVTPF EIMMAKVWSMGLVVLVVSGLSLMLMVKGVLGVPIEGSIPLFMLGVALSLFATTSIGIF MGTIARSMPQLGLLMILVLLPLQMLSGGSTPRESMPQAVQDIMLTMPTTHFVSLAQAI LYRGAGLSIVWPQFLTLLAIGGVFFLIALLRFRKTIGTMA" misc_feature complement(<3752119..3752970) /gene="yhhJ" /locus_tag="STM3585" /note="ABC-type Na+ efflux pump, permease component NatB [Energy production and conversion, Inorganic ion transport and metabolism]; Region: NatB; COG1668" /db_xref="CDD:441274" misc_feature complement(3751861..3752451) /gene="yhhJ" /locus_tag="STM3585" /note="ABC-type multidrug transport system, permease component [Defense mechanisms]; Region: YadH; COG0842" /db_xref="CDD:440604" gene complement(3752970..3755666) /gene="yhiH" /locus_tag="STM3586" /db_xref="GeneID:1255109" CDS complement(3752970..3755660) /gene="yhiH" /locus_tag="STM3586" /note="ATPase component; Permease component of an ABC-transporter; similar to E. coli putative ATP-binding component of a transport system, fragment 1 (AAC76511.1); Blastp hit to AAC76511.1 (894 aa), 89% identity in aa 1 - 894" /codon_start=1 /transl_table=11 /product="putative ABC-type multidrug transport system" /protein_id="NP_462487.3" /db_xref="GeneID:1255109" /translation="MSQHYGKTVALNNITLDIPARSMVGLIGPDGVGKSSLLSLISGA RVIEQGNVIVLGGDMRDAKHRRDVCPRIAWMPQGLGKNLYHTLSVYENVDFFARLFGH DKAEREARITELLNSTGLAPFRDRPAGKLSGGMKQKLGLCCALIYDPELLILDEPTTG VDPLSRAQFWDLIDSIRQRQTNMSVLVATAYMEEAERFDWLVAMNAGEILATGSAQQL RAKTHSATLEQAFIALLPEAQRQAHKPVVIPPYHAEQEEIAIEAKDLTMRFGKFVAVD HVNFRIPRGEIFGFLGSNGCGKSTTMKMLTGLLPASEGQAWLFGQPVDPNDIDTRRRV GYMSQAFSLYNELTVRQNLELHARLFHIPPAEIPARVAQMIERFMLTEVEDTLPASLP LGIRQRLSLAVAVIHRPEMLILDEPTSGVDPVARDMFWQLMVDLSRQDKVTIFISTHF MNEAERCDRMSLMHAGKVLASGTPQELVQQRGAANLEAAFISWLQEAAGAAPETPIPP SQTPAASGKPSRQGLSFRRLFSYSRREALELRRDPVRSTLALLGTVILMLIMGYGISM DVENLRFAVLDRDQTVSSQAWSLNLAGSRYFIEQPPLASYDELDRRMRSGELAVAIEI PPNFGRDIARGTPAQIGVWVDGAMPSRAETVKGYVQAMHQSWLQEAASRQPNPVKQVG LLNIETRYRYNPDVKSLPAIVPAVIPLLLMMIPSMLSALSVVREKELGSMINLYVTPT TRSEFLLGKQLPYIALGMLNFLLLCALSVFVFGVPLKGSFLTLTLAALLYVIIATGLG LLISTFMKSQIAAIFGTSIITLIPATQFSGMIDPVASLEGPGRWIGEIYPTSHFLTIA RGTFSKALDLSDLWPLFMPLLIAVPVVMGLSILLLKKQEG" misc_feature complement(3752976..3755657) /gene="yhiH" /locus_tag="STM3586" /note="ribosome-associated ATPase/putative transporter RbbA; Region: ABC2_perm_RbbA; NF033858" /db_xref="CDD:468210" regulatory complement(3752976..3752981) /regulatory_class="ribosome_binding_site" /gene="yhhJ" /locus_tag="STM3585" /note="putative RBS for yhhJ; RegulonDB:STMS1H003574" regulatory complement(3755661..3755666) /regulatory_class="ribosome_binding_site" /gene="yhiH" /locus_tag="STM3586" /note="putative RBS for yhiH; RegulonDB:STMS1H003575" gene complement(3755708..3756786) /gene="yhiI" /locus_tag="STM3587" /db_xref="GeneID:1255110" CDS complement(3755708..3756775) /gene="yhiI" /locus_tag="STM3587" /note="similar to E. coli putative membrane protein (AAC76512.1); Blastp hit to AAC76512.1 (355 aa), 87% identity in aa 1 - 355" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462488.1" /db_xref="GeneID:1255110" /translation="MDKMKRHLVWWGAGILVAVAAIAWWMLRPAGIPEGFAASNGRIE ATEVDIATKIAGRIDTILVSEGQFVRQGEVLAKMDTRVLQEQRLEAIAQIKEAESAVA AARALLEQRQSEMRAAQSVVKQREAELDSVSKRHVRSRSLSQRGAVSVQQLDDDRAAA ESARAALETAKAQVSAAKAAIEAARTSIIQAQTRVEAAQATERRIVADIDDSELKAPR DGRVQYRVAEPGEVLSAGGRVLNMVDLSDVYMTFFLPTEQAGLLKIGGEARLVLDAAP DLRIPATISFVASVAQFTPKTVETHDERLKLMFRVKARIPPELLRQHLEYVKTGLPGM AWVRLDERVPWPDALSVRLSQ" misc_feature complement(3755756..3756775) /gene="yhiI" /locus_tag="STM3587" /note="Multidrug resistance efflux pump EmrA [Defense mechanisms]; Region: EmrA; COG1566" /db_xref="CDD:441174" regulatory complement(3756781..3756786) /regulatory_class="ribosome_binding_site" /gene="yhiI" /locus_tag="STM3587" /note="putative RBS for yhiI; RegulonDB:STMS1H003576" gene complement(3757081..3758289) /gene="yhiN" /locus_tag="STM3588" /db_xref="GeneID:1255111" CDS complement(3757081..3758277) /gene="yhiN" /locus_tag="STM3588" /note="similar to E. coli orf, hypothetical protein (AAC76517.1); Blastp hit to AAC76517.1 (400 aa), 88% identity in aa 1 - 398" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462489.1" /db_xref="GeneID:1255111" /translation="MERFDAVIIGAGAAGMFCAAQAGQAGSRVLLIDNGKKPGRKILM SGGGRCNFTNLYVEPAAYLSQNPHFCKSALARYTQWDFIDLVDRYGIAWHEKTLGQLF CDDSAQRIVDMLVAECDKGGVTMRLRSEVLSVERDESGFILALNGETVTTQKLVIASG GLSMPGLGASPFGYKIAEQFGLRVLPTRAGLVPFTLHKPLLEQLQTLSGVSVPCVITA RNGTVFRENLLFTHRGLSGPAVLQISSYWQPGELVSINLLPDLSLEDVLNEQRNAHPN QSLKNTLAMHLPKRLVECLQQLGQIPDVSLRQLNVRDQQALVDTLTAWQVQPNGTEGY RTAEVTLGGVDTNELSSRTMEARRVPGLYFIGEVMDVTGWLGGYNFQWAWSSAWACAQ DLAAKR" misc_feature complement(3757099..3758268) /gene="yhiN" /locus_tag="STM3588" /note="HI0933-like protein; Region: HI0933_like; pfam03486" /db_xref="CDD:427330" regulatory complement(3758284..3758289) /regulatory_class="ribosome_binding_site" /gene="yhiN" /locus_tag="STM3588" /note="putative RBS for yhiN; RegulonDB:STMS1H003577" gene 3758493..3760004 /gene="pitA" /locus_tag="STM3589" /db_xref="GeneID:1255112" regulatory 3758493..3758498 /regulatory_class="ribosome_binding_site" /gene="pitA" /locus_tag="STM3589" /note="putative RBS for pitA; RegulonDB:STMS1H003578" CDS 3758508..3760004 /gene="pitA" /locus_tag="STM3589" /note="PiT family; similar to E. coli low-affinity phosphate transport (AAC76518.1); Blastp hit to AAC76518.1 (499 aa), 92% identity in aa 1 - 499" /codon_start=1 /transl_table=11 /product="low-affinity phosphate transporter" /protein_id="NP_462490.1" /db_xref="GeneID:1255112" /translation="MLHLFAGLDLHTGLLLLLALAFVLFYEAINGFHDTANAVATVIY TRAMRSQLAVVMAAVFNFFGVLLGGLSVAYAIVHMLPTDLLLNMGSAHGLAMVFSMLL AAIIWNLGTWYFGLPASSSHTLIGAIIGIGLTNAMMTGTSVVDALNIPKVINIFGSLI ISPIVGLVFAGGLIFLLRRYWSGTKKRARIHLTPAEREKKDGKKKPPFWTRIALILSA IGVAFSHGANDGQKGIGLVMLVLIGVAPAGFVVNMNASSYEITRTRDAINNVETYFEQ RPDLLKAVTGVDQLIPSPEPGATEPTEFHCHPANTINALNRAKGMLANVESYDKLSVE QRSQLRRIMLCISDTTDKVVKLPGVSSDDQRLLKKLKTDMLSTIEYAPVWIIMAVALA LGIGTMIGWRRVATTIGEKIGKKGMTYAQGMSAQMTAAVSIGLASYTGMPVSTTHVLS SSVAGTMVVDGGGLQRKTVTSILMAWVFTLPAAIILSGVLYWLSLKII" misc_feature 3758508..3760001 /gene="pitA" /locus_tag="STM3589" /note="Phosphate transporter family; Region: PHO4; cl27575" /db_xref="CDD:474944" gene complement(3760144..3760487) /gene="uspB" /locus_tag="STM3590" /db_xref="GeneID:1255113" CDS complement(3760144..3760479) /gene="uspB" /locus_tag="STM3590" /note="involved in stationary-phase resistance to ethanol; similar to E. coli orf, hypothetical protein (AAC76519.1); Blastp hit to AAC76519.1 (111 aa), 95% identity in aa 1 - 111" /codon_start=1 /transl_table=11 /product="universal stress protein B" /protein_id="NP_462491.1" /db_xref="GeneID:1255113" /translation="MISTVSLFWALCVVCIVNMARYFSSLRALLVVLRGCDPLLYQYV DGGGFFTTHGQPNKQVRLVWYIYAQRYRDHHDEEFIRRCERVRRQFLLTSALCGLVVV SLIALMIWH" misc_feature complement(3760147..3760479) /gene="uspB" /locus_tag="STM3590" /note="universal stress protein UspB; Provisional; Region: PRK04960" /db_xref="CDD:235323" regulatory complement(3760482..3760487) /regulatory_class="ribosome_binding_site" /gene="uspB" /locus_tag="STM3590" /note="putative RBS for uspB; RegulonDB:STMS1H003579" protein_bind 3760615..3760623 /note="putative binding site for FadR, RegulonDB: STMS1H000178" /bound_moiety="FadR" gene 3760693..3761301 /gene="uspA" /locus_tag="STM3591" /db_xref="GeneID:1255114" regulatory 3760693..3760701 /regulatory_class="minus_35_signal" /gene="uspA" /locus_tag="STM3591" /note="putative -35_signal for uspA; RegulonDB:STMLTH004606" regulatory 3760719..3760727 /regulatory_class="minus_10_signal" /gene="uspA" /locus_tag="STM3591" /note="putative -10_signal for uspA; RegulonDB:STMLTH004606" protein_bind 3760732..3760740 /gene="uspA" /locus_tag="STM3591" /note="putative binding site for FadR, RegulonDB: STMS1H000180" /bound_moiety="FadR" regulatory 3760854..3760859 /regulatory_class="ribosome_binding_site" /gene="uspA" /locus_tag="STM3591" /note="putative RBS for uspA; RegulonDB:STMS1H003580" CDS 3760867..3761301 /gene="uspA" /locus_tag="STM3591" /note="similar to E. coli universal stress protein; broad regulatory function? (AAC76520.1); Blastp hit to AAC76520.1 (144 aa), 99% identity in aa 1 - 144" /codon_start=1 /transl_table=11 /product="universal stress protein A" /protein_id="NP_462492.1" /db_xref="GeneID:1255114" /translation="MAYKHILIAVDLSPESKVLVEKAVSMARPYNAKISLIHVDVNYS DLYTGLIDVNLGDMQKRISEETHHALTELSTNAGYPITETLSGSGDLGQVLVDAIKKY DMDLVVCGHHQDFWSKLMSSARQLINTVHVDMLIVPLRDEEE" misc_feature 3760867..3761298 /gene="uspA" /locus_tag="STM3591" /note="universal stress protein UspA; Region: PRK15118" /db_xref="CDD:185073" gene 3761619..3763095 /gene="yhiP" /locus_tag="STM3592" /db_xref="GeneID:1255115" regulatory 3761619..3761624 /regulatory_class="ribosome_binding_site" /gene="yhiP" /locus_tag="STM3592" /note="putative RBS for yhiP; RegulonDB:STMS1H003581" CDS 3761626..3763095 /gene="yhiP" /locus_tag="STM3592" /note="similar to E. coli putative transport protein (AAC76521.1); Blastp hit to AAC76521.1 (489 aa), 88% identity in aa 1 - 486" /codon_start=1 /transl_table=11 /product="putative POT family peptide transport protein" /protein_id="NP_462493.1" /db_xref="GeneID:1255115" /translation="MNTTAPTGLLQQPRPFFMIFFVELWERFGYYGVQGILAVFFVKQ LGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTLVLGAIVLAIGYFMTGMSL LNPDLIFIALGTIAVGNGLFKANPASLLSKCYQPKDPRLDGAFTLFYMSINIGSLLSL SLAPVIADKFGYAVTYNLCGAGLIVALLVYFACRGMVKNIGSEPDHKPLRFRNLLLVL LGTVVMIFLCAWLMHNVKIANLVLIVLSIVVTIFFFREAFRLDKTGRNKMFVAFILMI EAVLFYILYAQMPTSLNFFAINNVHHEILGFAINPVSFQALNPFWVVVASPVLAAIYT RLGSKGKDLTMPMKFTLGMFLCALGFLTAAAGMWFADAQGLTSPWFIVLVYLFQSLGE LLISALGLAMVAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPENITDPLQTL PIYTGVFSKIGLVTLAVTVVMAIMVPWLNRMINTPGTEQ" misc_feature 3761626..3763089 /gene="yhiP" /locus_tag="STM3592" /note="dipeptide/tripeptide permease DtpB; Region: PRK10207" /db_xref="CDD:182306" misc_feature order(3761704..3761706,3761716..3761718,3761992..3761994, 3762070..3762072,3762079..3762084,3762091..3762093, 3762478..3762480,3762577..3762582,3762589..3762591, 3762799..3762801) /gene="yhiP" /locus_tag="STM3592" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340904" gene complement(3763187..3763959) /gene="yhiQ" /locus_tag="STM3593" /db_xref="GeneID:1255116" CDS complement(3763187..3763945) /gene="yhiQ" /locus_tag="STM3593" /note="hypothetical 27.4 Kda protein in uspA-prlC intergenic region. (SW:YHIQ_SALTY)" /codon_start=1 /transl_table=11 /product="putative SAM-dependent methyltransferase" /protein_id="NP_462494.1" /db_xref="GeneID:1255116" /translation="MQICLMDETGATDGALSVLAARWGLEHDEDNPMALVMTPQHLEL RKRDEPKLGGIFVDFVGGAMAHRRKFGGGRGEAVAKAVGIKGDYLPDVVDATAGLGRD AFVLASVGCRVRMLERNPVVAALLDDGLTRGYADADIGGWLQERLQLIHASSLTALTD ITPRPQVVYLDPMFPHRQKSALVKKEMRVFQSLVGPDLDADGLLEPARQLATKRVVVK RPDYAPPLADVATPNAIVTKGHRFDIYAGTPLTE" misc_feature complement(3763199..3763945) /gene="yhiQ" /locus_tag="STM3593" /note="16S rRNA (guanine(1516)-N(2))-methyltransferase RsmJ; Region: PRK10742" /db_xref="CDD:236749" misc_feature complement(order(3763433..3763435,3763484..3763492, 3763592..3763597,3763643..3763663)) /gene="yhiQ" /locus_tag="STM3593" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene complement(3763952..3766007) /gene="prlC" /locus_tag="STM3594" /db_xref="GeneID:1255117" CDS complement(3763952..3765994) /gene="prlC" /locus_tag="STM3594" /EC_number="3.4.24.70" /note="oligopeptidase A. (SW:OPDA_SALTY)" /codon_start=1 /transl_table=11 /product="oligopeptidase A" /protein_id="NP_462495.1" /db_xref="GeneID:1255117" /translation="MTNPLLTSFSLPPFSAIKPEHVVPAVTKALADCRAAVEGVVAHG APYSWENLCQPLAEADDVLGRIFSPISHLNSVKNSPELREAYEQTLPLLSEYSTWVGQ HEGLYNAYRDLRDGDHYATLNTAQKKAVDNALRDFELSGIGLPKEKQQRYGEIATRLS ELGNQYSNNVLDATMGWTKLITDEAELAGMPESALAAAKAQAEAKEQEGYLLTLDIPS YLPVMTYCDNQALREEMYRAYSTRASDQGPNAGKWDNSPVMEEILALRHELAQLLGFE NYAHESLATKMAENPQQVLDFLTDLAKRARPQGEKELAQLRAFAKAEFGVEELQPWDI AYYSEKQKQHLYSISDEQLRPYFPENKAVNGLFEVVKRIYGITAKERTDVDVWHPEVR FFELYDENNELRGSFYLDLYAREHKRGGAWMDDCVGQMRKADGTLQKPVAYLTCNFNR PVNGKPALFTHDEVITLFHEFGHGLHHMLTRIETAGVSGISGVPWDAVELPSQFMENW CWEPEALAFISGHYETGEPLPKELLDKMLAAKNYQAALFILRQLEFGLFDFRLHAEFN PQQGAKILETLFEIKKQVAVVPSPTWGRFPHAFSHIFAGGYAAGYYSYLWADVLAADA YSRFEEEGIFNRETGQSFLDNILTRGGSEEPMELFKRFRGREPQLDAMLEHYGIKG" misc_feature complement(3763955..3765994) /gene="prlC" /locus_tag="STM3594" /note="oligopeptidase A; Provisional; Region: PRK10911" /db_xref="CDD:182832" regulatory complement(3763954..3763959) /regulatory_class="ribosome_binding_site" /gene="yhiQ" /locus_tag="STM3593" /note="putative RBS for yhiQ; RegulonDB:STMS1H003582" regulatory complement(3766002..3766007) /regulatory_class="ribosome_binding_site" /gene="prlC" /locus_tag="STM3594" /note="putative RBS for prlC; RegulonDB:STMS1H003583" gene complement(3766176..3767454) /locus_tag="STM3595" /db_xref="GeneID:1255118" CDS complement(3766176..3767447) /locus_tag="STM3595" /codon_start=1 /transl_table=11 /product="putative phosphatase" /protein_id="NP_462496.1" /db_xref="GeneID:1255118" /translation="MKLHITVLASSLALAMPALAKDIPLSQAESIAKSVTPDSASVAF NDLEAQWLTQLRKALQGDTAALTRDALAQMRQNSIQADNAWLQASGYDFHTTENQQMG ITLLSAFNTLPEAVLKDNLATVTAINHDADVNTRHQALADAESVEYLYFLSDAMGPRL GRAFLAAYDKGELGKAAALIKASEVSTGAAKKYFHYPRPYQVPGNTIHLTPDDVVVKD GHPYTAGGGAFPSGHTNTGYTDALLMAEMIPERFDALVIRGARYGYSRLVLGVHYPLD VMGARMVAQRNVAHYLNDPYYRTLFNEARAQLREALVKECGTTIVECAASTGKDDPYR DPAMHTFYRFTMTYNLPQQKGEHQPLKIPKGADVLLQTALPNLSPAQRQALMEETALP AGYPLSGETEDQQFWQRLDLSAAYEMARKTR" misc_feature complement(3766521..3767261) /locus_tag="STM3595" /note="PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains...; Region: PAP2_acid_phosphatase; cd03397" /db_xref="CDD:239491" misc_feature complement(order(3766620..3766622,3766632..3766634, 3766650..3766652,3766749..3766757,3766854..3766856, 3766875..3766877)) /locus_tag="STM3595" /note="active site" /db_xref="CDD:239491" regulatory complement(3767449..3767454) /regulatory_class="ribosome_binding_site" /locus_tag="STM3595" /note="putative RBS for STM3595; RegulonDB:STMS1H003584" gene 3767641..3768500 /gene="yhiR" /locus_tag="STM3596" /db_xref="GeneID:1255119" regulatory 3767641..3767646 /regulatory_class="ribosome_binding_site" /gene="yhiR" /locus_tag="STM3596" /note="putative RBS for yhiR; RegulonDB:STMS1H003585" CDS 3767658..3768500 /gene="yhiR" /locus_tag="STM3596" /note="similar to E. coli orf, hypothetical protein (AAC76524.1); Blastp hit to AAC76524.1 (280 aa), 92% identity in aa 1 - 280" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462497.1" /db_xref="GeneID:1255119" /translation="MLSYRHSFHAGNHADVLKHTVQSLIIESLKEKEKPFLYLDTHAG AGRYQLGSEHAERTGEYLEGIARIWQQDDLPAELEPYISVVKHFNRSGQLRYYPGSPL IARQLLREQDSLQLTELHPSDFPLLRAEFQKDNRARVERADGYQQLKAKLPPVSRRGL ILIDPPYEMKTDYQAVVSGISEGYKRFATGTYALWYPVVLRQQIKRMIHELEATGIRK ILQIELAIRPDSDQRGMTASGMIVVNPPWKLEQQMNNVLPWLHSRLAPNGHGHTSVSW IVPE" misc_feature 3767658..3768491 /gene="yhiR" /locus_tag="STM3596" /note="23S rRNA A2030 N6-methylase RlmJ [Translation, ribosomal structure and biogenesis]; Region: RlmJ; COG2961" /db_xref="CDD:442201" gene 3768594..3769957 /gene="gor" /locus_tag="STM3597" /db_xref="GeneID:1255120" regulatory 3768594..3768599 /regulatory_class="ribosome_binding_site" /gene="gor" /locus_tag="STM3597" /note="putative RBS for gor; RegulonDB:STMS1H003586" CDS 3768605..3769957 /gene="gor" /locus_tag="STM3597" /EC_number="1.8.1.7" /note="similar to E. coli glutathione oxidoreductase (AAC76525.1); Blastp hit to AAC76525.1 (450 aa), 94% identity in aa 1 - 450" /codon_start=1 /transl_table=11 /product="glutathione oxidoreductase" /protein_id="NP_462498.1" /db_xref="GeneID:1255120" /translation="MTKHYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVN VGCVPKKVMWHAAQIREAIHLYGPDYGFDTTINQFDWSKLIASRTAYIDRIHTSYDNV LGKNNVDVIKGFARFVDAKTIEVNGETITADHILIATGGRPSHPEIPGVEYGIDSDGF FALSALPERVAVVGAGYIAVELAGVINALGAKTHLFVRKHAPLRSFDPMISETLVEVM NAEGPQLHTHAVPKAVVKNADGSLTLELEDGRSETVDCLIWAIGREPSTDNINLAAAG VKTNEKGYIIVDKFQNTNVEGIYAVGDNTGAVELTPVAVAAGRRLSERLFNNKPEEHL DYSNIPTVVFSHPPIGTVGLSEPQAREQYGDEQVKVYKSSFTAMYTAVTTHRQPCRMK LVCVGPEEKIVGIHGIGFGMDEMLQGFAVALKMGATKKDFDNTVAIHPTASEEFVTMR " misc_feature 3768605..3769954 /gene="gor" /locus_tag="STM3597" /note="glutathione reductase; Validated; Region: PRK06116" /db_xref="CDD:235701" gene complement(3770004..3771054) /locus_tag="STM3598" /db_xref="GeneID:1255121" CDS complement(3770004..3771047) /locus_tag="STM3598" /EC_number="3.5.1.1" /EC_number="1.8.1.7" /note="similar to E. coli periplasmic L-asparaginase II (AAC75994.1); Blastp hit to AAC75994.1 (348 aa), 46% identity in aa 22 - 348" /codon_start=1 /transl_table=11 /product="putative L-asparaginase" /protein_id="NP_462499.1" /db_xref="GeneID:1255121" /translation="MKIRVFMATVLLLISHCVFSTTSLPHIVILATGGTIAGTAANNT QTAGYKSGELGVQTLINAVPEMNNIARVDGEQVANIGSENMTSDIILKLSQKVNALLA RDDVDGVVITHGTDTLDETAYFLNLTVKSDKPVVFTAAMRPASAISADGAMNLLEAVT VAADPNAKGRGVMVVLNDRIGSARFVTKTNATTLDTFKAPEEGYLGVIVNGQPQFETR VEKIHTLRSVFDVRNIKKLPNVVIIYGYQDDPEYMYDAAIAHHADGIIYAGTGAGSVS VRSDAGIKKAEKAGIIVVRASRTGNGVVPLDKGQPGLVSDSLNPAKARVLLMTALTQT RNPELIQSYFSTY" misc_feature complement(3770007..3771047) /locus_tag="STM3598" /note="Bacterial L-asparaginases and related enzymes; Region: L-asparaginase_like; cl00216" /db_xref="CDD:469665" misc_feature complement(order(3770226..3770228,3770484..3770486, 3770628..3770630,3770700..3770708,3770799..3770807, 3770943..3770948)) /locus_tag="STM3598" /note="active site" /db_xref="CDD:199208" misc_feature complement(order(3770130..3770135,3770154..3770159, 3770220..3770222,3770226..3770228,3770232..3770240, 3770262..3770264,3770268..3770270,3770292..3770294, 3770298..3770300,3770310..3770312,3770316..3770318, 3770322..3770324,3770385..3770390,3770394..3770402, 3770406..3770408,3770421..3770423,3770427..3770429, 3770433..3770441,3770469..3770471,3770475..3770486, 3770496..3770498,3770502..3770504,3770514..3770519, 3770589..3770594,3770601..3770609,3770622..3770624, 3770688..3770690,3770700..3770702,3770778..3770780, 3770787..3770801,3770943..3770945)) /locus_tag="STM3598" /note="homotetramer interface [polypeptide binding]; other site" /db_xref="CDD:199208" misc_feature complement(order(3770076..3770078,3770085..3770090, 3770139..3770144,3770151..3770159,3770220..3770228, 3770232..3770240,3770262..3770264,3770268..3770270, 3770277..3770282,3770289..3770294,3770298..3770300, 3770310..3770312,3770316..3770318,3770322..3770330, 3770472..3770486,3770685..3770693,3770697..3770702, 3770778..3770780,3770787..3770801)) /locus_tag="STM3598" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:199208" regulatory complement(3771049..3771054) /regulatory_class="ribosome_binding_site" /locus_tag="STM3598" /note="putative RBS for STM3598; RegulonDB:STMS1H003587" gene complement(3771106..3772433) /locus_tag="STM3599" /db_xref="GeneID:1255122" CDS complement(3771106..3772425) /locus_tag="STM3599" /note="similar to E. coli anaerobic dicarboxylate transport (AAC77098.1); Blastp hit to AAC77098.1 (433 aa), 42% identity in aa 1 - 433" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462500.1" /db_xref="GeneID:1255122" /translation="MFWTELCFILVALMIGARIGGVFLGMVGGLGVGVMVFIFGLTPS TPPIDVILIILSVVLAAASLQASGGLDLLVKLAEKILRRHPRYITLLAPFICYIFTFM SGTGHVVYSLLPVISEVARDSGIRPERPLSISVIASQQAITASPISAAMAAMIGLMAP LGVSISTIMMICVPATLIGVAMGAIATFNKGKELKDDPEYQRRLAEGLIKPAQKESKN TVVTSRAKLSVALFLTSAIVIVLLGLIPALRPMVETAKGLQPLSMSAAIQITMLSFAC LIVLLCRPQVDQIISGTVFRAGALAIVCAFGLAWMSETFVNGHIALIKAEVQTLLQQH TWLIAIMMFFVSAMVSSQAATTLILLPLGLALGLPAYALIGSWPAVNGYFFIPVAGQC LAALAFDDTGTTRIGKYVLNHSFMRPGLVNVIVSVIVGLLIGKMVLA" misc_feature complement(3771112..3772425) /locus_tag="STM3599" /note="Anaerobic C4-dicarboxylate transporter [Carbohydrate transport and metabolism]; Region: DcuA; COG2704" /db_xref="CDD:442024" regulatory complement(3772428..3772433) /regulatory_class="ribosome_binding_site" /locus_tag="STM3599" /note="putative RBS for STM3599; RegulonDB:STMS1H003588" gene complement(3772479..3773335) /locus_tag="STM3600" /db_xref="GeneID:1255123" CDS complement(3772479..3773324) /locus_tag="STM3600" /note="ribokinase family; similar to E. coli putative kinase (AAC76399.1); Blastp hit to AAC76399.1 (261 aa), 30% identity in aa 7 - 261" /codon_start=1 /transl_table=11 /product="putative sugar kinases" /protein_id="NP_462501.1" /db_xref="GeneID:1255123" /translation="MSISVLGIGDNVVDKYLHSGIMYPGGNALNFAVYAKLADIPSAF MGAFGNDDAAQHVQDVLHQLQIDISHSRHYTGENGYACIRLSHGDRQFVASNKNGVLR EHPFSLSDDDLRYISQFTLVHSSINGHLESELEKIKQQTVLLSFDFSGRGTDDYFEKV CPWVDYGFISCSGLSPDEIKVKLNKLYRYGCRHIIATCGHEKVYYFSGADYLEWQPAY IEPVDTLGAGDAFLTGFLLSILQSGMAEPDKESVLRAMRQGGKSAAQVLSHYGAFGFG KPFAQ" misc_feature complement(3772506..3773315) /locus_tag="STM3600" /note="Fructoselysine kinase-like. Fructoselysine is a fructoseamine formed by glycation, a non-enzymatic reaction of glucose with a primary amine followed by an Amadori rearrangement, resulting in a protein that is modified at the amino terminus and at the...; Region: Fructoselysine_kinase_like; cd01940" /db_xref="CDD:238915" misc_feature complement(order(3772638..3772640,3772647..3772649, 3773235..3773237)) /locus_tag="STM3600" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238915" misc_feature complement(order(3772536..3772538,3772545..3772547, 3772632..3772634,3772641..3772646,3772653..3772655, 3772734..3772736,3772815..3772817)) /locus_tag="STM3600" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238915" regulatory complement(3773330..3773335) /regulatory_class="ribosome_binding_site" /locus_tag="STM3600" /note="putative RBS for STM3600; RegulonDB:STMS1H003589" gene complement(3773388..3774372) /locus_tag="STM3601" /db_xref="GeneID:1255124" CDS complement(3773388..3774365) /locus_tag="STM3601" /note="similar to E. coli putative transport protein (AAC76396.1); Blastp hit to AAC76396.1 (347 aa), 28% identity in aa 42 - 303" /codon_start=1 /transl_table=11 /product="putative phosphosugar isomerase" /protein_id="NP_462502.1" /db_xref="GeneID:1255124" /translation="MMGMKETVSNIVTSQAEKGGVKHVYYVACGGSYAAFYPAKAFLE KEAKALTVGLYNSGEFINNPPVALGENAVVVVASHKGNTPETIKAAEIARQHGAPVIG LTWIMDSPLVAHCDYVETYTFGDGKDIAGEKTMKGLLSAVELLQQTEGYAHYDDFQDG VSKINRIVWRACEQVAERAQAFAQEYKDDKVIYTVASGAGYGAAYLQSICIFMEMQWI HSACIHSGEFFHGPFEITDANTPFFFQFSEGNTRAVDERALNFLKKYGRRIEVVDAKE LGLSTIKTTVIDYFNHSLFNNVYPVYNRALAEARQHPLTTRRYMWKVEY" misc_feature complement(3773931..3774299) /locus_tag="STM3601" /note="A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars; Region: SIS_1; cd05710" /db_xref="CDD:240214" misc_feature complement(3773397..3774296) /locus_tag="STM3601" /note="Fructoselysine-6-P-deglycase FrlB or related protein, duplicated sugar isomerase (SIS) domain [Cell wall/membrane/envelope biogenesis]; Region: AgaS; COG2222" /db_xref="CDD:441824" misc_feature complement(order(3774132..3774134,3774270..3774272)) /locus_tag="STM3601" /note="putative active site [active]" /db_xref="CDD:240214" regulatory complement(3774367..3774372) /regulatory_class="ribosome_binding_site" /locus_tag="STM3601" /note="putative RBS for STM3601; RegulonDB:STMS1H003590" gene complement(3774541..3775265) /locus_tag="STM3602" /db_xref="GeneID:1255125" CDS complement(3774541..3775260) /locus_tag="STM3602" /note="similar to E. coli putative transcriptional regulator (AAC76400.1); Blastp hit to AAC76400.1 (265 aa), 28% identity in aa 27 - 260" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_462503.1" /db_xref="GeneID:1255125" /translation="MIEQPDSKSAKPLYKQLEAALKEAIARGEYKPGQQIPTENELSV RWQVSRVTVRKALDALTRENLLTRVSGKGTFVSGEKFQRSMTGIMSFSELCQSQGRRP GSRTIKSVFESVDDETKALLNMNDGEKAVVIERIRYADDVAVSLETVHLPPRFAFLLD EDLNNHSLYECLREKYHLWFTHSRKMIELVYASFEVAHYLGVNEGYPLILIKSEMIDN KGELSCVSQQLIVGDKIRFTV" misc_feature complement(3774544..3775239) /locus_tag="STM3602" /note="DNA-binding transcriptional regulator, GntR family [Transcription]; Region: MngR; COG2188" /db_xref="CDD:441791" regulatory complement(3775260..3775265) /regulatory_class="ribosome_binding_site" /locus_tag="STM3602" /note="putative RBS for STM3602; RegulonDB:STMS1H003591" gene 3775568..3777235 /gene="treF" /locus_tag="STM3603" /db_xref="GeneID:1255126" regulatory 3775568..3775573 /regulatory_class="ribosome_binding_site" /gene="treF" /locus_tag="STM3603" /note="putative RBS for treF; RegulonDB:STMS1H003592" CDS 3775586..3777235 /gene="treF" /locus_tag="STM3603" /EC_number="3.2.1.28" /note="similar to E. coli cytoplasmic trehalase (AAC76544.1); Blastp hit to AAC76544.1 (549 aa), 92% identity in aa 1 - 549" /codon_start=1 /transl_table=11 /product="cytoplasmic trehalase" /protein_id="NP_462504.1" /db_xref="GeneID:1255126" /translation="MLNQKLNPTPSEDLTIDVDLLYETDPCELKLDEMIEAEPEPEMI EGLPASDALTPADRYLELFEHVQSTKLFPDSKTFPDCAPKMDPLDILIRYRKVRRHRD FDLRRFVENHFWLPETLSSEYVSNPENSLKEHIDQLWPILTREPQDHIPWSSLLALPQ SYIVPGGRFSETYYWDSYFTMLGLAESGREDLLKCMADNFAWMIENYGHIPNGNRTYY LSRSQPPVFALMVELFEEDGVRGARRYLDHLKMEYAFWMDGAESLALNQAYRHVVRMP DGSLLNRYWDDRDTPRDESWLEDVETAKHSGRPPNEVYRDLRAGAASGWDYSSRWLRD AGRLASIRTTQFIPIDLNAFLYKLESAIANISALKGERDTEALFRQKASDRRAAVNHY LWDDENGCYRDYDWRREEMALFSAASIVPLYVGMANHEQADRLANVVRSRLLTPGGIM ATEYETGEQWDKPNGWAPLQWMAIQGFKRYGDDMLGDEIAHNWLKTVNHFYQEHHKLI EKYHISGGTPREGGGGEYPLQDGFGWTNGVVRRLIGLYGEP" misc_feature 3775586..3777232 /gene="treF" /locus_tag="STM3603" /note="alpha,alpha-trehalase TreF; Region: treF; PRK13270" /db_xref="CDD:183934" gene complement(3777248..3778842) /locus_tag="STM3604" /db_xref="GeneID:1255127" CDS complement(3777248..3778837) /locus_tag="STM3604" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462505.1" /db_xref="GeneID:1255127" /translation="MTNSASQATRAPFEHSLGIIRQASIEILLLLGIHTTEGKEPRWF MEQLEQARLNLGGWGAVAKKLRINDAQLSQFMLQLRHLQQHVPQYDSGQEVSENQLLA ALRFVTSLEHLRQQQPLLTYQTELEEPDQEAHLEAQRQLRAIELTLKALIARAWPDRA SLNHYLKQHFGPDRLRQWLKQGEDQHALEGMLFSELALMVVDKKLFARHYVRIFNDAS ALTLFAESRTTLRMFLDDCRLARNEVIARQPLTSAQLMLLNVQYQQIVRPIQRAYAEK RTRVNPASFLLADERELRQFWETARLKDRQAGGDKHEISESIEPPRKRPPRTPEEREQ LISGALWGAVGVMTLAILAGAFWLFSSSSPGSDNGQAPAMAQDEPPREAPSARETLNH MGITWDAFTMRAAIERNDTRVTALFLQGGMNWQLAWTEQAFAAGHTEVLQLLLRYPAL MDEVKPCRRFITTLSHDMSSGAPLTAMHKTYLQTFCTVPAVVTRQQHDTEQARLRAQA RPSADNKKWLKIQSAIYDAIH" misc_feature complement(3777992..3778837) /locus_tag="STM3604" /note="STY4199-like HEPN; Region: HEPN_STY4199; pfam18729" /db_xref="CDD:436696" regulatory complement(3778837..3778842) /regulatory_class="ribosome_binding_site" /locus_tag="STM3604" /note="putative RBS for STM3604; RegulonDB:STMS1H003593" gene 3779114..3779474 /locus_tag="STM3605" /db_xref="GeneID:1255128" regulatory 3779114..3779119 /regulatory_class="ribosome_binding_site" /locus_tag="STM3605" /note="putative RBS for STM3605; RegulonDB:STMS1H003594" CDS 3779118..3779474 /locus_tag="STM3605" /codon_start=1 /transl_table=11 /product="putative phage endolysin" /protein_id="NP_462506.1" /db_xref="GeneID:1255128" /translation="MPHISSRFSSACIAFIKQWQGLSLEKYRDRQGNWVIGYGHMLTP DETLTFITPDQAEAFLLDDLNSCDILLQNCLPELNDRFQRETLIALMFSIGHQRFLSL INTGDISQPEISGLRI" misc_feature 3779151..>3779438 /locus_tag="STM3605" /note="lysozyme-like domains; Region: Lyz-like; cl00222" /db_xref="CDD:469668" gene complement(3779480..3780098) /gene="yhjB" /locus_tag="STM3606" /db_xref="GeneID:1255129" CDS complement(3779480..3780082) /gene="yhjB" /locus_tag="STM3606" /note="LuxR/UhpA family; similar to E. coli putative regulator (AAC76545.1); Blastp hit to AAC76545.1 (200 aa), 72% identity in aa 1 - 200" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_462507.1" /db_xref="GeneID:1255129" /translation="MQVIMFDRQSIFIHGMKISLQQHIPGISIQSVGQAEELWQKIES APDALVMLDSGLDAEFCREVLQRTAQQFPEVKIIITAMDGSQKWLHEVMQFNVQAVVP RDSDAETFVLALNAVARGMMFLPGDWLNSTELESRDIKALSARQREILQMLAAGESNK QIGRALNISTGTVKAHLESLYRRLDVKNRTQAAMMLNESN" misc_feature complement(3779489..>3779899) /gene="yhjB" /locus_tag="STM3606" /note="transcriptional regulator CsgD; Region: PRK10100" /db_xref="CDD:182241" misc_feature complement(3779483..>3779659) /gene="yhjB" /locus_tag="STM3606" /note="DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription]; Region: CitB; COG2197" /db_xref="CDD:441799" regulatory complement(3780093..3780098) /regulatory_class="ribosome_binding_site" /gene="yhjB" /locus_tag="STM3606" /note="putative RBS for yhjB; RegulonDB:STMS1H003595" gene 3780707..3781612 /gene="yhjC" /locus_tag="STM3607" /db_xref="GeneID:1255130" regulatory 3780707..3780712 /regulatory_class="ribosome_binding_site" /gene="yhjC" /locus_tag="STM3607" /note="putative RBS for yhjC; RegulonDB:STMS1H003596" CDS 3780713..3781612 /gene="yhjC" /locus_tag="STM3607" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC76546.1); Blastp hit to AAC76546.1 (323 aa), 66% identity in aa 25 - 320" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462508.1" /db_xref="GeneID:1255130" /translation="MDKIYAMKLFVRVAERESFSRAAEDIGLPKGSVSRQIQALEHQL GIRLLHRTTRRVQLTQDGMVYYERAKDLLSNLDELEGLFQPDPASISGKIRVDIPPCL ANSLIMPRLPTFLHQYPGIALELCSSDRQVDLLREDFDCVVRTEPLHAPGILTRPLGK LRRVNCASPQYLARFGYPENLDDLASHAMVHYSLTPGVSSPGFAFETPHGMQWVKTGG MLTVNSTETWHTACLAGLGIIQTPRIAVREALRAGTLIEILPQYRAAPLPVTLHYPHR RNLSRRVHLFMVWLTETIKEAAE" misc_feature 3780728..3780898 /gene="yhjC" /locus_tag="STM3607" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature 3780986..3781588 /gene="yhjC" /locus_tag="STM3607" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; Region: PBP2_CrgA_like_3; cd08472" /db_xref="CDD:176161" misc_feature order(3781016..3781018,3781028..3781030,3781145..3781147, 3781187..3781189,3781193..3781195,3781385..3781387, 3781436..3781438,3781517..3781519) /gene="yhjC" /locus_tag="STM3607" /note="putative effector binding pocket [active]" /db_xref="CDD:176161" misc_feature order(3781019..3781024,3781034..3781039,3781043..3781048, 3781055..3781057,3781067..3781069,3781073..3781093, 3781274..3781276,3781367..3781381,3781400..3781405, 3781412..3781414) /gene="yhjC" /locus_tag="STM3607" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176161" gene 3781669..3782713 /gene="yhjD" /locus_tag="STM3608" /db_xref="GeneID:1255131" regulatory 3781669..3781674 /regulatory_class="ribosome_binding_site" /gene="yhjD" /locus_tag="STM3608" /note="putative RBS for yhjD; RegulonDB:STMS1H003597" CDS 3781685..3782713 /gene="yhjD" /locus_tag="STM3608" /note="similar to E. coli orf, hypothetical protein (AAC76547.1); Blastp hit to AAC76547.1 (337 aa), 85% identity in aa 1 - 336" /codon_start=1 /transl_table=11 /product="putative tRNA-processing ribonuclease" /protein_id="NP_462509.1" /db_xref="GeneID:1255131" /translation="MTQENDVKRPIQELEHDPIQKIETQPHDAPEKNEKANQALHSVT TLMQKIQRQPMVAHLIRATERFNDRLGNQFGAAITYFSFLSMIPIMMVSFAAAGFILA SHPNLLEDIFSKILMNVSDPTLASTLKNTINTAVQQRTTVGLVGLGIALYSGVNWMGN LREAIRAQSRDVWERKPQDQEKIWLKYLRDFISLIGLLIALIITLSITSIAGSAQQMI ISALYLDSIEWLKPAWHLIGLAISIFANYLLFFWIFWRLPRHRPRKKALIRGTFIAAI GFEVIKIIMTYTLPSLVKSPSGAAFGSVLGLMAFFYFFARLTLFCAAWIATAEYKDDP RMPGKTQR" misc_feature 3781853..3782677 /gene="yhjD" /locus_tag="STM3608" /note="inner membrane protein YhjD; Region: TIGR00766" /db_xref="CDD:188082" gene 3783053..3784386 /gene="yhjE" /locus_tag="STM3609" /db_xref="GeneID:1255132" regulatory 3783053..3783058 /regulatory_class="ribosome_binding_site" /gene="yhjE" /locus_tag="STM3609" /note="putative RBS for yhjE; RegulonDB:STMS1H003598" CDS 3783064..3784386 /gene="yhjE" /locus_tag="STM3609" /note="similar to E. coli putative transport protein (AAC76548.1); Blastp hit to AAC76548.1 (440 aa), 94% identity in aa 1 - 440" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_462510.1" /db_xref="GeneID:1255132" /translation="MQATATTLDHEQEHVPVNSRNKVVIASLIGTAIEFFDFYIYATA AVIVFPLIFFPQGDPTAATLQSLATFAIAFVARPIGSALFGHFGDRVGRKVTLVASLL TMGISTVIIGLLPGYATIGIFAPLLLALARFGQGLGLGGEWGGAALLATENAPPRKRA LYGSFPQLGAPIGFFFANGTFLLLSWLLTDEQFMSWGWRVPFIFSAVLVIIGLYVRVS LHETPVFAKVAAAKKQVKIPLGTLLTKHVRVTVLGTFIMLATYTLFYIMTVYSMTYST AAAPVGLGLPRNEILWMLMMAVIGFGVMVPIAGLLADAFGRRKSMVIITTLIILFALF AFTPLLGSGNPALVFVFLLLGLSLMGLTFGPMGALLPELFPTEVRYTGASFSYNVSSI LGASVAPYIAAWLQSHYGLAAVGVYLASMAALTLIALLLTHETRHQAL" misc_feature 3783127..3784326 /gene="yhjE" /locus_tag="STM3609" /note="Shikimate transporter and similar proteins of the Major Facilitator Superfamily; Region: MFS_ShiA_like; cd17369" /db_xref="CDD:340927" misc_feature order(3783163..3783168,3783175..3783180,3783187..3783189, 3783304..3783306,3783478..3783483,3783487..3783495, 3783502..3783504,3783562..3783564,3783571..3783576, 3783583..3783585,3783832..3783834,3783841..3783846, 3783853..3783861,3783868..3783870,3783964..3783966, 3783976..3783978,3784135..3784140,3784150..3784152, 3784162..3784164,3784210..3784212,3784219..3784224, 3784231..3784236,3784243..3784245) /gene="yhjE" /locus_tag="STM3609" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340927" gene complement(3784426..3786499) /gene="yhjG" /locus_tag="STM3610" /db_xref="GeneID:1255133" CDS complement(3784426..3786486) /gene="yhjG" /locus_tag="STM3610" /note="similar to E. coli orf, hypothetical protein (AAC76549.1); Blastp hit to AAC76549.1 (691 aa), 93% identity in aa 6 - 691" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462511.1" /db_xref="GeneID:1255133" /translation="MTKAGKITAAITGTFLLLIAIVILLIATFDWNRLKPTINQKVST ELNRPFAIRGDLGVVWERQKQETGWRSWVPWPHVHAEDVILGNPPDIPEVTMVHLPRV EATLAPLALLTKTVWLPWIKLVKPDARLIRLSEKTNNWTFNLAQDKNTDPNAKPSAWS FRLDNILFDQGRIAIDDKVSKADITILIDPLGKPLPFSEVTGTKGKADKSTVGDYVFG LKAQGRYNGEPLTGTGKIGGMLALRSESTPFPVQADFRSGNTRVAFSGVVNEPMKMGG VDLRLKFSGDSLGDLYDLTGVLLPDTPPFETDGRLVAKIDAEKSSVFDYRGFNGRIGD SDIHGSLTYTTGKPRPKLEGDVESRQLRLADLGPLIGVDSGKDAEQSKRSEQRKGEKN VQPADKVLPYDRFETDKWDVMDADVRFKGRRIEHGGSLPISDLSTHIILKNADLRLQP LKFGLAGGSIVSNIHLEGDKKPMQGRADIQARRLKLKELMPDVELMQKTLGELNGDAD IRGTGNSVAALLGNSNGNLKLLMNDGLISRNLMEIVGLNVGNYIVGQIFGDDEVRVNC AAANLNITNGVARPQIFAFDTENALINVTGTASFASEQLDLTIDPESKGIRIITLRSP LYVRGTFKNPQAGVKPGPLIARGAVAAALATLVTPAAALLALISPSEGEANQCRTILT QMKQ" misc_feature complement(3784738..3786486) /gene="yhjG" /locus_tag="STM3610" /note="AsmA family; Region: AsmA; pfam05170" /db_xref="CDD:428346" regulatory complement(3786494..3786499) /regulatory_class="ribosome_binding_site" /gene="yhjG" /locus_tag="STM3610" /note="putative RBS for yhjG; RegulonDB:STMS1H003599" gene complement(3786596..3787376) /gene="yhjH" /locus_tag="STM3611" /db_xref="GeneID:1255134" CDS complement(3786596..3787363) /gene="yhjH" /locus_tag="STM3611" /note="similar to E. coli orf, hypothetical protein (AAC76550.1); Blastp hit to AAC76550.1 (256 aa), 79% identity in aa 2 - 256" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase domain 3 containing protein" /protein_id="NP_462512.1" /db_xref="GeneID:1255134" /translation="MIKQVIQQLRVPDAGIENLQERRYWLQCERAYTYQPIYQTDGRL MAVELLTVVTHPDNPSRRIAPDRYFAELAVRHRIDVVKEQLHQLEQKADFFTRHHLLA SVNVDGPTLIAMRRQPDILAAMERLPWLRFELVEHIRLPKDSSFASMCEFGPLWLDDF GTGMANFSALSEVRYDYIKVARELFVMLRQSPEGRNLFTLLLQLMNRYCRGVIVEGVE TLEEWRDVQRSPAFAAQGYFLSRPVPLISLEEVILTL" misc_feature complement(3786599..3787363) /gene="yhjH" /locus_tag="STM3611" /note="cyclic-di-GMP phosphodiesterase; Provisional; Region: PRK11596" /db_xref="CDD:183222" regulatory complement(3787371..3787376) /regulatory_class="ribosome_binding_site" /gene="yhjH" /locus_tag="STM3611" /note="putative RBS for yhjH; RegulonDB:STMS1H003600" gene 3787579..3788521 /gene="kdgK" /locus_tag="STM3612" /db_xref="GeneID:1255135" regulatory 3787579..3787584 /regulatory_class="ribosome_binding_site" /gene="kdgK" /locus_tag="STM3612" /note="putative RBS for kdgK; RegulonDB:STMS1H003601" CDS 3787592..3788521 /gene="kdgK" /locus_tag="STM3612" /EC_number="2.7.1.45" /note="similar to E. coli ketodeoxygluconokinase (AAC76551.1); Blastp hit to AAC76551.1 (382 aa), 92% identity in aa 74 - 381" /codon_start=1 /transl_table=11 /product="ketodeoxygluconokinase" /protein_id="NP_462513.1" /db_xref="GeneID:1255135" /translation="MSKKIAVIGECMIELSQKGADVQRGFGGDTLNTSVYIARQVDSA ALAVHYVTALGTDSFSQQMLEAWQHENVDTSLTQRMENRLPGLYYIETDDTGERTFYY WRNEAAAKFWLESEQSAAICETLATFDYLYLSGISLAILSPTSRDKLLSLLRECRANG GKVIFDNNYRPRLWTSREETQQVYQKMLECTDIAFLTLDDEDALWGQQPVEEVIARTH AAGVQEVVVKRGADSCLVSIQGEALIDVPAVKLPKEKVIDTTAAGDSFSAGYLAVRLT GGSATDAAKRGHLTASTVIQYRGAIIPHDAMPQ" misc_feature 3787601..3788494 /gene="kdgK" /locus_tag="STM3612" /note="2-keto-3-deoxygluconate kinase (KdgK) phosphorylates 2-keto-3-deoxygluconate (KDG) to form 2-keto-3-deoxy-6-phosphogluconate (KDGP). KDG is the common intermediate product, that allows organisms to channel D-glucuronate and/or D-galacturinate into the...; Region: KdgK; cd01166" /db_xref="CDD:238571" misc_feature order(3787673..3787678,3787685..3787687,3787853..3787855, 3787895..3787897,3787901..3787903,3787997..3787999, 3788099..3788101,3788372..3788374,3788381..3788383, 3788489..3788491) /gene="kdgK" /locus_tag="STM3612" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238571" misc_feature order(3788273..3788275,3788288..3788290,3788345..3788347, 3788372..3788380,3788387..3788389,3788453..3788455, 3788465..3788467) /gene="kdgK" /locus_tag="STM3612" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238571" gene complement(3788575..3790073) /gene="yhjJ" /locus_tag="STM3613" /db_xref="GeneID:1255136" CDS complement(3788575..3790062) /gene="yhjJ" /locus_tag="STM3613" /note="protein YHJJ precursor. (SW:YHJJ_SALTY)" /codon_start=1 /transl_table=11 /product="putative Zn-dependent peptidase" /protein_id="NP_462514.1" /db_xref="GeneID:1255136" /translation="MQGTKIRLLAGSLLMLASAGYVQADALQPDPAWQQGTLANGLQW QVLATPQRPSDRIEVRLQVNTGSLTESTQQSGFSHAIPRIALTQSGGLDAAQARSLWQ QGFDPKRPMPPVIVSYDSTLYNLSLPNNRNDLLKEALTYLANVSGKLTITPETVNHAL SSEDMVATWPADTKEGWWRYRLKGSALLGHDPAEPLKQPVDAAKIQAFYEKWYTPDAM TLIVVGNIDARSVAEQINKTFGTLKGKRETPAPVPTLSPLRAESVSIMTDAVRQDRLS IMWDTPWQPIRESAALLRYWQADLAREALFWHIQQELTKNNAKDIGLGFDCRVLFLRA QCAINIESPNDKLNTNLSLVANELAKVRDKGLSEEEFTALVAQKNLELQKLFATYART DTDILTGQRMRSLQNQVVDIAPEQYQKLRQNFLNSLTVDMLNQNLRQQLSQEMALILL QPQGEPEFNMKALKATWDEIMVPTTAAAVEADEAHPEVTETPAAQ" misc_feature complement(3788692..3790002) /gene="yhjJ" /locus_tag="STM3613" /note="Predicted Zn-dependent peptidase, M16 family [General function prediction only]; Region: PqqL; COG0612" /db_xref="CDD:440377" regulatory complement(3790068..3790073) /regulatory_class="ribosome_binding_site" /gene="yhjJ" /locus_tag="STM3613" /note="putative RBS for yhjJ; RegulonDB:STMS1H003602" gene complement(3790282..3791579) /gene="dctA" /locus_tag="STM3614" /db_xref="GeneID:1255137" CDS complement(3790282..3791568) /gene="dctA" /locus_tag="STM3614" /note="C4-dicarboxylate transport protein. (SW:DCTA_SALTY)" /codon_start=1 /transl_table=11 /product="DAACS family C4-dicarboxylic acids transport protein" /protein_id="NP_462515.1" /db_xref="GeneID:1255137" /translation="MKTSLFKSLYFQVLTAIAIGILLGHYYPELGAQMKPLGDAFVKL IKMIIAPVIFCTVVTGIAGMESMKAVGRTGAVALLYFEIVSTIALIIGLIIVNVVQPG AGMNVDPATLDAQAVAVYAAQAKEQGIIAFLMDVIPGSVIGAFASGNILQVLLFAVLF GFALHRLGSKGQLIFNVIESFSQVIFGIINMIMRLAPIGAFGAMAFTIGKYGVGSLVQ LGQLIICFYITCILFVVVVLGTIARVTGFSIFKFIRYIREELLIVLGTSSSESALPRM LDKMEKLGCRKSVVGLVIPTGYSFNLDGTSIYLTMAAVFIAQATNSHMDIFHQITLLV VLLLSSKGAAGVTGSGFIVLAATISAVGHLPVAGLALILGIDRFMSEARALTNLVGNG VATVVVAKWVKELDHQKLDDVLNNRAPDGKTHEISS" misc_feature complement(3790288..3791568) /gene="dctA" /locus_tag="STM3614" /note="C4-dicarboxylate transporter DctA; Reviewed; Region: PRK01663" /db_xref="CDD:234968" regulatory complement(3791574..3791579) /regulatory_class="ribosome_binding_site" /gene="dctA" /locus_tag="STM3614" /note="putative RBS for dctA; RegulonDB:STMS1H003603" gene complement(3791726..3793699) /gene="yhjK" /locus_tag="STM3615" /db_xref="GeneID:1255138" CDS complement(3791726..3793699) /gene="yhjK" /locus_tag="STM3615" /note="similar to E. coli orf, hypothetical protein (AAC76554.1); Blastp hit to AAC76554.1 (651 aa), 84% identity in aa 1 - 651" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase" /protein_id="NP_462516.3" /db_xref="GeneID:1255138" /translation="MAMVAAVVMMFVFVFCTVLLFHLVQQNRYNTATQLESIARSVRE PLSSAILKADLPGAETILESIKPAGVVSRADVVLPNQFQALRKRFIPERPVPVMVTRL FELPVQISLPVYSLERPANPQPLAYLVLQADSYRMYKFVMSALSTLVTIYLLLSLILT VAIAWCVNRLIVHPLRKIARELNDIPQQELIGHQLALPRLHQDDEIGMLVRSYNLNQQ LMQRQREEQTDNAMRFPVSELPNKAFLMALLEQVITRQQTTALIIVTCETLRDTAGVL QETQREILLLTLVEKLKSVLAPRMVLTQVSGYDFAIIAHGVKEPWHAITLGQQILTII NERLPIQGIQLRPSCSIGIAMYYGDLTAEALYGRAVSAAFTARRKGKNQIQFFDPAQM EAAQQRLTEESDILTALDNHQFAIWLQPQVEMRSGNVLSAEALLRMQQPDGSWELPEG LIERIESCGLMVTVGYWVLEESCRQLAAWQERGVTLPLSVNLSALQLMHPGMVSDLLE LLNRYRIQPGTLILEVTESRRIDDPHAAVAILRPLRNAGVRIALDDFGMGYAGLRQLQ HMKSLPVDILKIDKMFVDGLPDDHSMVTAIILMARSLNLQLIAEGVENEAQRAWLEQA GVNVAQGFLFARPVPADIFEERYLSHENPDYKS" misc_feature complement(3791747..3793654) /gene="yhjK" /locus_tag="STM3615" /note="putative diguanylate cyclase; Provisional; Region: PRK13561" /db_xref="CDD:184143" gene complement(3793906..3797460) /gene="yhjL" /locus_tag="STM3616" /db_xref="GeneID:1255139" CDS complement(3793906..3797448) /gene="yhjL" /locus_tag="STM3616" /note="similar to E. coli putative oxidoreductase subunit (AAC76555.1); Blastp hit to AAC76555.1 (1166 aa), 80% identity in aa 20 - 1166" /codon_start=1 /transl_table=11 /product="putative TPR-repeat-containing protein" /protein_id="NP_462517.1" /db_xref="GeneID:1255139" /translation="MRKFTLSLMHAFLPAGGRNALPGKRGVSRALLGLSLGMALTPLA GAATSAQQQLLEQVRLGEATHREDLVRQSLYRLELIDPNDPQVIAARFRYLLRQGDSD GAQKLLDRLAQLAPESTAYQSSRTAMLLSTPQGRQSLQEARLLATTGHTEQAIASYDK LFKGYPPEGELAVEYWTTVAKLPARRHEAINQLQKINAVSPGNNALQNALAQLLFASG RRDEGFAVLKQMAKSSTGRSAASAIWYQQIKDLPVSDASVKALQDYLTQFSEGDSVSA ARAQLSEQQKQLADPAFRARSQGIAAVNAGEGGKAIAQLQQAVSARQDDSEAVGALGQ AYSQRGDRARAVAQFEKALAMAPHSSSRDKWESLLKVNRYWLLIQQGDAALKANNLAQ AERFYQQARAVDNTDSYAVLGLGDVAMARKDNAAAERYYQQTLRMDSGNTNAVRGLAN LYRQQSPQKAAAFIASLSASQRRSIDDIERSLENDRLAQQAETLESEGKWAQAAELHR RRLALDPGSVWVTYRLSRDLWQAGQHAQADAQMRSLAQQKPNDPEQVYAYGLYLSGSD RDRAALAHLNTLPTSQWNSNIQELAGRLQSNQVLESANRLRDSGKEREAEALLRQQPP STRIALTLADWAQQRGDNAAARAAYDAVLAREPGNVDAMLGRVEIDIAQGDNAAARAQ LAALPASQITSINMQRRVALAQLQLGDITAAARTFNRITPQAKAQPPSMESAMVLRDA AAFQAQTGEPQRALETYKDAMVAAAITPVRPQDNDTFTRLTRNDEKDDWLKRGVRSDA AELYRQQDLNVTLAHDYWGSSGTGGYSDLKAHTTMLQVDAPWSDGRAFFRTDMVNMDV GRFSTDADGKYDNNWGTCTLEKCSGHRSQADTGASVAVGWQNETWRWDIGTTPMGFNV VDVVGGVSYSDDIGPLGYTLNAHRRPISSSLLAFGGQKDASSNTGTKWGGVRANGGGV SLSYDKGEANGVWASLSGDQLSGKNVEDNWRVRWMTGYYYKVINENNRRVTVGLNNMI WHYDKDLSGYSLGQGGYYSPQEYLSFAVPVMWRQRTENWSWELGGSVSWSHSRNRTMP RYPLMNLIPADYQEDARDQTNGGGSSQGFGYTARALIERRVTANWFVGTAVDIQQAKD YTPSHLLLYVRYSAAGWQGDMDLPPQPLVPYADW" misc_feature complement(3793909..3797376) /gene="yhjL" /locus_tag="STM3616" /note="cellulose synthase subunit BcsC; Provisional; Region: PRK11447" /db_xref="CDD:183140" misc_feature complement(3796693..3796839) /gene="yhjL" /locus_tag="STM3616" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276808" misc_feature complement(3796387..3796473) /gene="yhjL" /locus_tag="STM3616" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(order(3796189..3796191,3796198..3796203, 3796210..3796215,3796222..3796224,3796291..3796296, 3796300..3796305,3796312..3796317,3796324..3796326, 3796438..3796440,3796444..3796449,3796456..3796461, 3796468..3796470)) /gene="yhjL" /locus_tag="STM3616" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature complement(3796240..3796332) /gene="yhjL" /locus_tag="STM3616" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(3796141..3796227) /gene="yhjL" /locus_tag="STM3616" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(3795913..3795990) /gene="yhjL" /locus_tag="STM3616" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(order(3795757..3795759,3795766..3795771, 3795778..3795783,3795790..3795792,3795859..3795864, 3795868..3795873,3795880..3795885,3795892..3795894, 3795964..3795966,3795970..3795975,3795982..3795987)) /gene="yhjL" /locus_tag="STM3616" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature complement(3795808..3795900) /gene="yhjL" /locus_tag="STM3616" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(3795721..3795795) /gene="yhjL" /locus_tag="STM3616" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene complement(3797430..3798539) /gene="bcsC" /locus_tag="STM3617" /db_xref="GeneID:1255140" CDS complement(3797430..3798539) /gene="bcsC" /locus_tag="STM3617" /note="similar to E. coli putative endoglucanase (AAC76556.1); Blastp hit to AAC76556.1 (368 aa), 81% identity in aa 1 - 367" /codon_start=1 /transl_table=11 /product="endo-1,4-D-glucanase" /protein_id="NP_462518.1" /db_xref="GeneID:1255140" /translation="MMTMLRGWITMLVMLTAINAQAACSWPAWEQFKKDYISQQGRVI DPGDARKITTSEGQSYAMFFALAANDRPAFAQLFNWTQNNLAQGSLREYLPAWLWGQK DPDTWSVLDSNSASDGDIWMAWSLLEAGRLWKETRYTEVGTALLKRIAREEVLNVPGL GSMLLPGKIGFAEANSWRFNPSYLPPQLAQYFSRFGAPWSTLRETNLRLLLETAPKGF SPDWVRYESKQGWQLKAEKTLISSYDAIRVYLWAGMMHDGDPQKARLLARFKPMATLT MKNGVPPEKVDVVSGNAQGTGPVGFSAALLPFLQNRDAQAVQRQRVADHFPGSDAYYN YVLTLFGQGWDQHRFRFTVKGELLPDWGQECVSSR" misc_feature complement(3797433..3798536) /gene="bcsC" /locus_tag="STM3617" /note="cellulase; Region: PRK11097" /db_xref="CDD:236844" regulatory complement(3797455..3797460) /regulatory_class="ribosome_binding_site" /gene="bcsC" /locus_tag="STM3617" /note="putative RBS for yhjL; RegulonDB:STMS1H003604" gene complement(3798543..3800843) /gene="yhjN" /locus_tag="STM3618" /db_xref="GeneID:1255141" CDS complement(3798543..3800843) /gene="yhjN" /locus_tag="STM3618" /note="similar to E. coli orf, hypothetical protein (AAC76557.1); Blastp hit to AAC76557.1 (779 aa), 82% identity in aa 1 - 779" /codon_start=1 /transl_table=11 /product="putative cellulose synthase" /protein_id="NP_462519.1" /db_xref="GeneID:1255141" /translation="MKRKLSWMCAAVIGLSAFPAFMTAAAPATPPLINAEPTEPAPSP ATEAPVVAQTAPSREVKLTFAQIAPPPGSMALRGVNPNGGIEFGMRSDEVASKAVLNL EYTPSPSLLPVQSQLKVYLNDELMGVLPVTKEQLGKKTLAQVPINPLFITDFNRVRLE FVGHYRDVCENPASSTLWLDIGRNSALDLTYNMLAVNNDLSHFPVPFFDPRDNRPVTL PIVFADMPDLAQQQAASIVASWFGSRAGWRGQRFPVLYNHLPDRNAIVFATNDRRPDF LRDHPAVNAPVIEMMSHPDNPYVKLLVVFGRDDKDLLQAAKGIAQGNILFRGSSVVVN DVKPLLARKPYDAPNWVRTDRPVTFGELKTYEEQLQSSGLEPAPINVSLNLPPDLYLL RSNGIDMDLNYRYTSPPTKDSSRLDISLNNQFLQAFSLNSTQETNRLLLRLPVLQGLL DGKTDVSIPALKLGAMNQLRFDFRYMNPMPGGSVDNCITFQPVPNHVVIGDDSTIDFS KYYHFIAMPDLRAFANAGFPFSRMADLSDTLAVMPKTPTEAQMETLLNTVGAIGGQTG FPAINLTITDDSAQIADKDADLLIISAIPGKLKDDKRIDLLVQATQSWVKTPMRQTAF PSIMPDEADRAADAQSTVTASGPMAAVVGFQSPFNDQRSVIALLADSPRGYQLLNDAV NDSGKRAAMFGSVAVIRESGVHSLRVGDIYYVGHLPWFERLWYALANHPVLLAVLAAL SVVLLAWVLWRLLRILSRRRLDPDHE" misc_feature complement(3798600..3800843) /gene="yhjN" /locus_tag="STM3618" /note="cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB; Region: PRK11114" /db_xref="CDD:236851" gene complement(3800854..3803491) /gene="yhjO" /locus_tag="STM3619" /db_xref="GeneID:1255142" CDS complement(3800854..3803478) /gene="yhjO" /locus_tag="STM3619" /note="probably involved in cell wall biogenesis; similar to E. coli putative cellulose synthase (AAC76558.1); Blastp hit to AAC76558.1 (888 aa), 88% identity in aa 17 - 887" /codon_start=1 /transl_table=11 /product="glycosyltransferase" /protein_id="NP_462520.1" /db_xref="GeneID:1255142" /translation="MSALSRWLLIPPVSARLSERYQGYRRHGASPFSAALGCLWTILA WIVFPLEHPRWQRIRDGHKALYPHINAARPRPLDPARYLIQTLWLVMISSTKERHEPR WRSFARLKDVRGRYHQWMDTLPERVRQKTTHLEKEKELGHLSNGARRFILGVIVTFSL ILALICITQPFNPLSQFIFLLLLWGVALLVRRMPGRFSALMLIVLSLTVSCRYIWWRY TSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPVPLPKEMSQWPTVD IFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGRESFRHFARHVGVHYIART THEHAKAGNINNALKHAKGEFVAIFDCDHVPTRSFLQMTMGWFLKEKQLAMMQTPHHF FSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPLDEIGGIA VETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQIFRLD NPLFGKGLKLAQRLCYLNAMFHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIALFV IPHMVHASLTNSKIQGKYRHSFWSEIYETVLAWYIAPPTLVALINPHKGKFNVTAKGG LVEEKYVDWVISRPYIFLVLLNLLGVAAGVWRYYYGPENETLTVIVSLVWVFYNLVIL GGAVAVSVESKQVRRAHRVEIAMPGAIAREDGHLFSCTVHDFSDGGLGIKINGQAQVL EGQKVNLLLKRGQQEYVFPTQVVRVTGNEVGLQLMPLTTKQHIDFVQCTFARADTWAL WQDSFPEDKPLESLLDILKLGFRGYRHLAEFAPPSVKVIFRSLTALIAWIVSFIPRRP ERQAAIQPSDRVMAQAQQ" misc_feature complement(3800884..3803439) /gene="yhjO" /locus_tag="STM3619" /note="cellulose synthase catalytic subunit; Provisional; Region: bcsA; PRK11498" /db_xref="CDD:236918" misc_feature complement(3802393..3802401) /gene="yhjO" /locus_tag="STM3619" /note="DXD motif [active]" /db_xref="CDD:133043" gene complement(3803475..3804240) /gene="yhjQ" /locus_tag="STM3620" /db_xref="GeneID:1255143" CDS complement(3803475..3804227) /gene="yhjQ" /locus_tag="STM3620" /note="similar to E. coli orf, hypothetical protein (AAC76559.1); Blastp hit to AAC76559.1 (242 aa), 77% identity in aa 1 - 240" /codon_start=1 /transl_table=11 /product="putative ATPase involved in chromosome partitioning" /protein_id="NP_462521.1" /db_xref="GeneID:1255143" /translation="MAILGLQGVRGGVGTTSLTAALAWALQILGENVLVIDASPDNLL RMSFNVDFVHQGGWARSLLDGQDWRDAGLRYTSQLDLLPFGQLTAQERENPQSWQETL GEIGSAIQALKASGRYSWILLDLPYGASPLTRQLVSLCDHTLAIARVDANCHIRLHQQ ALPAGAHILINDLRIGSQLQDDLYQVWLQSQRRLLPIVIHRDEAMAECMASKQPLGEY RSDSLAAEEVLTLANWCLLHDAGDKTSAGSLR" misc_feature complement(3803478..3804227) /gene="yhjQ" /locus_tag="STM3620" /note="cellulose biosynthesis protein BcsQ; Region: PRK10037" /db_xref="CDD:182204" misc_feature complement(order(3803706..3803708,3803715..3803717, 3803856..3803858,3804177..3804194)) /gene="yhjQ" /locus_tag="STM3620" /note="active site" /db_xref="CDD:349751" regulatory complement(3803486..3803491) /regulatory_class="ribosome_binding_site" /gene="yhjQ" /locus_tag="STM3620" /note="putative RBS for yhjO; RegulonDB:STMS1H003605" gene complement(3804228..3804445) /gene="yhjR" /locus_tag="STM3621" /db_xref="GeneID:1255144" CDS complement(3804228..3804431) /gene="yhjR" /locus_tag="STM3621" /note="similar to E. coli orf, hypothetical protein (AAC76560.1); Blastp hit to AAC76560.1 (62 aa), 76% identity in aa 1 - 60" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462522.1" /db_xref="GeneID:1255144" /translation="MYNNEPGAQSDPTLGYTFQNDFLALSQAFSLPEIDYTDISQREQ LAAAIKRWPLLAEFAQPHSLRKP" misc_feature complement(3804255..3804380) /gene="yhjR" /locus_tag="STM3621" /note="Cellulose biosynthesis protein BcsR; Region: CBP_BcsR; pfam10945" /db_xref="CDD:431551" regulatory complement(3804235..3804240) /regulatory_class="ribosome_binding_site" /gene="yhjR" /locus_tag="STM3621" /note="putative RBS for yhjQ; RegulonDB:STMS1H003606" regulatory complement(3804440..3804445) /regulatory_class="ribosome_binding_site" /gene="yhjR" /locus_tag="STM3621" /note="putative RBS for yhjR; RegulonDB:STMS1H003607" gene 3804676..3806247 /gene="yhjS" /locus_tag="STM3622" /db_xref="GeneID:1255145" CDS 3804676..3806247 /gene="yhjS" /locus_tag="STM3622" /note="similar to E. coli putative protease (AAC76561.1); Blastp hit to AAC76561.1 (523 aa), 80% identity in aa 1 - 523" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462523.1" /db_xref="GeneID:1255145" /translation="MRDTVDPVFSLGISSLWDELRHMPTGGVWWVNADRQQDAISLVN QTIASQTENANVAVIGMEGDPGKVIKLDESHGPEKIRLFTMPASEKGLYSLPHDLLCS VNPTHYFFILICANNTWRNITSESLHKWLEKMNKWTRFHHCSLLVINPCNNSDKQSSL LMGEYRSLFGLASLRFQGDQHLFDIAFWCNEKGVSARQQLLLCQQDERWTLSHQEETA IQPRSDEKRILSHVAVLEGAPPLSEHWTLFDNNEALFNDARTAQAATIIFSLTQNNQI EPLARRIHTLRRQRGSALKIVVRENIASLRATDERLLLGCGANMIIPWNAPLSRCLTL IESVQGQQFSRYVPEDITTLLSMTQPLKLRGFQPWDTFCDAIHTMMSNTLLPADGKGV LVALRPVPGIRVEQALTLCRPNRTGDIMTIGGNRLVLFLSFCRVNDLDTALNHIFPLP TGDIFSNRMVWFEDKQISAELVQMRLLSPELWGTPLPLAKRADPVINAEHDGRIWRRI PEPLRLLDDTAERAS" misc_feature 3804688..3806244 /gene="yhjS" /locus_tag="STM3622" /note="cellulose biosynthesis protein BcsE; Provisional; Region: PRK15045" /db_xref="CDD:185005" gene 3806230..3806435 /gene="yhjT" /locus_tag="STM3623" /db_xref="GeneID:1255146" regulatory 3806230..3806235 /regulatory_class="ribosome_binding_site" /gene="yhjT" /locus_tag="STM3623" /note="putative RBS for yhjT; RegulonDB:STMS1H003608" CDS 3806244..3806435 /gene="yhjT" /locus_tag="STM3623" /note="similar to E. coli orf, hypothetical protein (AAC76562.1); Blastp hit to AAC76562.1 (62 aa), 80% identity in aa 1 - 62" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462524.1" /db_xref="GeneID:1255146" /translation="MMTISDIVQIILFCALIFFPLGYLARHSLRRISDTTRLLFAKPR YVKPAGTLRRATKVKADKK" misc_feature 3806247..3806432 /gene="yhjT" /locus_tag="STM3623" /note="celllulose biosynthesis operon protein BcsF/YhjT; Region: cellullose_BcsF; TIGR03493" /db_xref="CDD:274605" gene 3806418..3808111 /gene="yhjU" /locus_tag="STM3624" /db_xref="GeneID:1255147" regulatory 3806418..3806423 /regulatory_class="ribosome_binding_site" /gene="yhjT" /locus_tag="STM3623" /note="putative RBS for yhjU; RegulonDB:STMS1H003609" CDS 3806432..3808111 /gene="yhjU" /locus_tag="STM3624" /note="similar to E. coli orf, hypothetical protein (AAC76563.1); Blastp hit to AAC76563.1 (559 aa), 84% identity in aa 1 - 559" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462525.1" /db_xref="GeneID:1255147" /translation="MTQHTQTPSMPSPLWQYWRGLSGWNFYFLVKFGLLWAGYLNFHP LLNLVFMAFLLMPIPKYRLHRLRHWIAIPVGFALFWHDTWLPGPQSIMSQGTQVAEFS SGYLLDLIARFINWQMIGAIFVLLVAWLFLSQWIRVTVFVVAIMVWLNVLTLTGPVFT LWPAGQPTDTVTTTGGNAAATVATAGDKPVIGDMPAQTAPPTTANLNAWLNTFYAAEE KRKTTFPAQLPPDAQPFDLLVINICSLSWSDVEAAGLMSHPLWSHFDILFKHFNSGTS YSGPAAIRLLRASCGQPSHTRLYQPANNECYLFDNLAKLGFTQHLMMDHNGEFGGFLK EVRENGGMQSELMNQSGLPTALLSFDGSPVYDDLAVLNRWLTGEEREANSRSATFFNL LPLHDGNHFPGVSKTADYKIRAQKLFDELDAFFTELEKSGRKVMVVVVPEHGGALKGD RMQISGLRDIPSPSITNVPAGVKFFGMKAPHEGAPIDINQPSSYLAISELVVRAVDGK LFTEDSVNWNKLTSNLPQTAPVSENANAVVIQYQGKPYVRLNGGDWVPYPQ" misc_feature 3806495..3808102 /gene="yhjU" /locus_tag="STM3624" /note="cellulose synthase operon protein YhjU; Region: cellulose_yhjU; TIGR03368" /db_xref="CDD:132411" gene 3808685..3808825 /locus_tag="STM3624A" /db_xref="GeneID:1255148" CDS 3808685..3808825 /locus_tag="STM3624A" /codon_start=1 /transl_table=11 /product="cystathionine gamma-synthase" /protein_id="NP_462526.1" /db_xref="GeneID:1255148" /translation="MTYSPVAPEEWLKAGITDELIRLSAGPEDPDDIIHDLERASRKA AF" misc_feature <3808685..3808804 /locus_tag="STM3624A" /note="Cystathionine beta-lyase/cystathionine gamma-synthase [Amino acid transport and metabolism]; Region: MetC; COG0626" /db_xref="CDD:440391" gene 3808932..3810241 /gene="yhjV" /locus_tag="STM3625" /db_xref="GeneID:1255149" regulatory 3808932..3808937 /regulatory_class="ribosome_binding_site" /gene="yhjV" /locus_tag="STM3625" /note="putative RBS for yhjV; RegulonDB:STMS1H003610" CDS 3808943..3810241 /gene="yhjV" /locus_tag="STM3625" /note="similar to E. coli putative transporter protein (AAC76564.1); Blastp hit to AAC76564.1 (423 aa), 87% identity in aa 5 - 423" /codon_start=1 /transl_table=11 /product="putative HAAAP family transport protein" /protein_id="NP_462527.1" /db_xref="GeneID:1255149" /translation="MQDDTLPLNNSNATTTPLSTRLPFTKYDFGWVLLCIGMAIGAGT VLMPVQIGLKGIWVFITAFIIAYPATYIVQDIYLKTLSESETCDDYTDIISHYLGKNW GIFLGVIYFLMIIHGVFIYSLSVVFDSASYIKTFGLTEADLSQSIIYKVAIFAVLVAI ASGGEKLLFKISGPMVVVKVGIILIFGFAMIPHWNLDNISAFPAASVFFRDVLLTIPF CFFSAVFIQVLNPMNIAYRKREPDRVLATRMAIRTHRISYITLIAIILFFSFSFTFSI SHEEAVSAFEQNISALALAAQVIPGHIIHITSTILNIFAVLTAFFGIYLGFHEALKGI VLNVLSRIMDVKNVNPLLLTSGICVFIVVTLVIWVSFRVSVLVFFQLGSPLYGIVACI IPFFLIYKVAQLEKLRGLKTWLILLYGILLCLSPLLKLIE" misc_feature 3809012..3810202 /gene="yhjV" /locus_tag="STM3625" /note="Solute carrier families 5 and 6-like; solute binding domain; Region: SLC5-6-like_sbd; cl00456" /db_xref="CDD:444915" gene complement(3810342..3811367) /gene="dppF" /locus_tag="STM3626" /db_xref="GeneID:1255150" CDS complement(3810342..3811355) /gene="dppF" /locus_tag="STM3626" /note="ABC superfamily (atp_bind); similar to E. coli putative ATP-binding component of dipeptide transport system (AAC76565.1); Blastp hit to AAC76565.1 (334 aa), 95% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="dipeptide transport protein" /protein_id="NP_462528.1" /db_xref="GeneID:1255150" /translation="MSTHEATLQQPLLRAIDLKKHYPVKKGIFSPERLVKALDGVSFN LERGKTLAVVGESGCGKSTLGRLLTMIETPTGGELYYQGQDLLKHDPHAQKLRRQKIQ IVFQNPYGSLNPRKKVGQILEEPLLINTSLSKAQRREKALAMMAKVGLKTEHYDRYPH MFSGGQRQRIAIARGLMLDPDVVIADEPVSALDVSVRAQVLNLMMDLQQDMGLSYVFI SHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQALLSATPRLNPDDRRER IKLTGELPSPLNPPPGCAFNARCSRRFGPCTQLQPQLKEYDGQLVACFAVDQDENPQK PLS" misc_feature complement(3810360..3811331) /gene="dppF" /locus_tag="STM3626" /note="dipeptide transporter ATP-binding subunit; Provisional; Region: dppF; PRK11308" /db_xref="CDD:236898" misc_feature complement(3811170..3811193) /gene="dppF" /locus_tag="STM3626" /note="Walker A/P-loop; other site" /db_xref="CDD:213224" misc_feature complement(order(3810696..3810698,3810795..3810800, 3811038..3811040,3811167..3811175,3811179..3811184)) /gene="dppF" /locus_tag="STM3626" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:213224" misc_feature complement(3811038..3811049) /gene="dppF" /locus_tag="STM3626" /note="Q-loop/lid; other site" /db_xref="CDD:213224" misc_feature complement(3810843..3810872) /gene="dppF" /locus_tag="STM3626" /note="ABC transporter signature motif; other site" /db_xref="CDD:213224" misc_feature complement(3810795..3810812) /gene="dppF" /locus_tag="STM3626" /note="Walker B; other site" /db_xref="CDD:213224" misc_feature complement(3810777..3810788) /gene="dppF" /locus_tag="STM3626" /note="D-loop; other site" /db_xref="CDD:213224" misc_feature complement(3810690..3810710) /gene="dppF" /locus_tag="STM3626" /note="H-loop/switch region; other site" /db_xref="CDD:213224" gene complement(3811352..3812345) /gene="dppD" /locus_tag="STM3627" /db_xref="GeneID:1255151" CDS complement(3811352..3812335) /gene="dppD" /locus_tag="STM3627" /note="ABC superfamily (atp_bind); similar to E. coli putative ATP-binding component of dipeptide transport system (AAC76566.1); Blastp hit to AAC76566.1 (327 aa), 95% identity in aa 1 - 327" /codon_start=1 /transl_table=11 /product="dipeptide transport protein" /protein_id="NP_462529.1" /db_xref="GeneID:1255151" /translation="MALLNVDQLSVHFGDEGTPFKAVDRISYSVKQGEVVGIVGESGS GKSVSSLAIMGLIDYPGRVMAENLLFNGQDLKRISEKERRNLVGAEVAMIFQDPMTSL NPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVA EAAHKIIVMYAGQVVETGAAQDIFRAPRHPYTQALLRALPEFAQDKARLASLPGVVPG KYDRPTGCLLNPRCPYATDRCRAEEPALNQLDDGRQSKCHYPLDDAGRPTL" misc_feature complement(3811355..3812335) /gene="dppD" /locus_tag="STM3627" /note="dipeptide transporter ATP-binding subunit; Provisional; Region: dppD; PRK11022" /db_xref="CDD:182906" regulatory complement(3811362..3811367) /regulatory_class="ribosome_binding_site" /gene="dppD" /locus_tag="STM3627" /note="putative RBS for dppF; RegulonDB:STMS1H003611" regulatory complement(3812340..3812345) /regulatory_class="ribosome_binding_site" /gene="dppD" /locus_tag="STM3627" /note="putative RBS for dppD; RegulonDB:STMS1H003612" gene complement(3812346..3813259) /gene="dppC" /locus_tag="STM3628" /db_xref="GeneID:1255152" CDS complement(3812346..3813248) /gene="dppC" /locus_tag="STM3628" /note="ABC superfamily (membrane); similar to E. coli dipeptide transport system permease protein 2 (AAC76567.1); Blastp hit to AAC76567.1 (300 aa), 94% identity in aa 1 - 300" /codon_start=1 /transl_table=11 /product="dipeptide transport protein 2" /protein_id="NP_462530.1" /db_xref="GeneID:1255152" /translation="MSQVTENNVNAAPAPMTPLREFWHYFKRNKGAVVGLAYVLIVIL IAVFANFIAPYNPAEQFRDALLAPPVWQEGGSWAHILGTDDVGRDVLSRLMYGARLSL LVGCLVVVLSLVMGIILGLVAGYFGGLVDNIIMRVVDIMLALPSLLLALVLVAIFGPS IGNAALALTFVALPHYVRLTRAAVLVEVNRDYVTASRVAGAGAMRQMFVNIFPNCLAP LIVQASLGFSNAILDMAALGFLGMGAQPPTPEWGTMLSDVLQFAQSAWWVVTFPGLAI LLTVLAFNLMGDGLRDALDPKLKQ" misc_feature complement(3812349..3813248) /gene="dppC" /locus_tag="STM3628" /note="dipeptide ABC transporter permease DppC; Region: PRK10913" /db_xref="CDD:182833" regulatory complement(3813254..3813259) /regulatory_class="ribosome_binding_site" /gene="dppC" /locus_tag="STM3628" /note="putative RBS for dppC; RegulonDB:STMS1H003613" gene complement(3813258..3814290) /gene="dppB" /locus_tag="STM3629" /db_xref="GeneID:1255153" CDS complement(3813258..3814277) /gene="dppB" /locus_tag="STM3629" /note="ABC superfamily (membrane); similar to E. coli dipeptide transport system permease protein 1 (AAC76568.1); Blastp hit to AAC76568.1 (339 aa), 97% identity in aa 1 - 339" /codon_start=1 /transl_table=11 /product="dipeptide transport protein 1" /protein_id="NP_462531.1" /db_xref="GeneID:1255153" /translation="MLQFILRRLGLVIPTFIGITLLTFAFVHMIPGDPVMIMAGERGI SPERHAQLLAELGLDKPMWQQYLHYIWGVMHGDLGISLKSRIPVWDEFVPRFKATLEL GVCAMIFAVAVGIPVGVLAAVKRGSIFDHTAVGLALTGYSMPIFWWGMMLIMLVSVHW NLTPVSGRVSDMVFLDDTNPLTGFMLIDTAIWGEEGNFIDALAHMILPAMVLGTIPLA VIVRMTRSSMLEVLGEDYIRTARAKGLTRMRVIIVHALRNAMLPVVTVIGLQVGTLLA GAILTETIFSWPGLGRWLIDALQRRDYPVVQGGVLLVATMIILVNLLVDLLYGVVNPR IRHKK" misc_feature complement(3813261..3814277) /gene="dppB" /locus_tag="STM3629" /note="dipeptide ABC transporter permease DppB; Region: PRK10914" /db_xref="CDD:182834" misc_feature complement(order(3813300..3813305,3813312..3813317, 3813324..3813329,3813333..3813338,3813345..3813350, 3813399..3813404,3813429..3813434,3813441..3813452, 3813471..3813473,3813480..3813485,3813525..3813527, 3813576..3813578,3813585..3813590,3813600..3813602, 3813606..3813611,3813618..3813620,3813624..3813626, 3813630..3813635,3813819..3813821,3813825..3813830, 3813837..3813866,3813870..3813881,3813912..3813914, 3813927..3813932,3813939..3813944)) /gene="dppB" /locus_tag="STM3629" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(3813435..3813452,3813819..3813863)) /gene="dppB" /locus_tag="STM3629" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(3813348..3813350,3813399..3813401, 3813408..3813410,3813432..3813434,3813648..3813650, 3813819..3813821)) /gene="dppB" /locus_tag="STM3629" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(3813504..3813506,3813516..3813521, 3813537..3813575)) /gene="dppB" /locus_tag="STM3629" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(3814285..3814290) /regulatory_class="ribosome_binding_site" /gene="dppB" /locus_tag="STM3629" /note="putative RBS for dppB; RegulonDB:STMS1H003614" gene complement(3814434..3816223) /gene="dppA" /locus_tag="STM3630" /db_xref="GeneID:1255154" CDS complement(3814434..3816041) /gene="dppA" /locus_tag="STM3630" /note="ABC superfamily (peri_perm); similar to E. coli dipeptide transport protein (AAC76569.1); Blastp hit to AAC76569.1 (535 aa), 93% identity in aa 1 - 535" /codon_start=1 /transl_table=11 /product="dipeptide transport protein" /protein_id="NP_462532.1" /db_xref="GeneID:1255154" /translation="MSISLKKSGMLKLGLSLVAMTVAASVQAKTLVYCSEGSPEGFNP QLFTSGTTYDASSVPIYNRLVEFKTGTTEVIPGLAEKWDISEDGKTYTFHLRKGVKWQ SSKDFKPTRELNADDVVFSFDRQKNEQNPYHKVSGGSYEYFEGMGLPDLISEVKKVDD HTVQFVLTRPEAPFLADLAMDFASILSKEYADNMLKAGTPEKVDLNPVGTGPFQLVQY QKDSRILYKAFDGYWGTKPQIDRLVFSITPDASVRYAKLQKNECQVMPYPNPADIARM KEDKNINLMEQAGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKEAIIKAVYQGAGVAA KNLIPPTMWGYNDDIKDYGYDPEKAKALLKEAGLEKGFTIDLWAMPVQRPYNPNARRM AEMIQADWAKIGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSC DAAQQGSNYSKWCYKPFEDLIQPARATDDHNKRIELYKQAQVVMHDQAPALIIAHSTV YEPVRKEVKGYVVDPLGKHHFENVSVE" misc_feature complement(3814485..3815954) /gene="dppA" /locus_tag="STM3630" /note="The substrate-binding component of an ABC-type dipeptide import system contains the type 2 periplasmic binding fold; Region: PBP2_DppA_like; cd08493" /db_xref="CDD:173858" misc_feature complement(order(3814734..3814736,3814740..3814751, 3814788..3814790,3814800..3814802)) /gene="dppA" /locus_tag="STM3630" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:173858" regulatory complement(3816049..3816054) /regulatory_class="ribosome_binding_site" /gene="dppA" /locus_tag="STM3630" /note="putative RBS for dppA; RegulonDB:STMS1H003615" regulatory complement(3816198..3816206) /regulatory_class="minus_10_signal" /gene="dppA" /locus_tag="STM3630" /note="putative -10_signal for dppA; RegulonDB:STMLTH004607" regulatory complement(3816215..3816223) /regulatory_class="minus_35_signal" /gene="dppA" /locus_tag="STM3630" /note="putative -35_signal for dppA; RegulonDB:STMLTH004607" gene complement(3816597..3817926) /locus_tag="STM3631" /db_xref="GeneID:1255155" CDS complement(3816597..3817922) /locus_tag="STM3631" /note="similar to E. coli putative permease (AAC75926.1); Blastp hit to AAC75926.1 (505 aa), 27% identity in aa 54 - 466" /codon_start=1 /transl_table=11 /product="putative xanthine permease" /protein_id="NP_462533.1" /db_xref="GeneID:1255155" /translation="MPQPGLTTPDNDALPWQTTLLLALQHVLVVAATPITSVFLIAKA LHFTDTVTASVLSATFLMCGLGAILQSLGVKGVGARLPFIMVPGGAPIAIFVAIALQT NIQTAIGAVILTSLFYFIALPIFRRCLHHFPPFIIGIMLLMVSINLIRLYGGLIIGQP GSADFAHPTSIILSLGTILITLIFALAFSGILRQLAVMFGLLAGTLLGMALGSTDFSG VSHGPLFSFPQLLPFGWPIFDLSASLPLLIYAVISMAEATGQTIATAEIVNSTQNVQQ AIPRTIRGDAVMSLLGGIFGTSLIITSGENIGVVRTTNVKSRFVTAAAGGLLILIAIF APLVRLATCLPGSVVCGTAVIVFSIIGVIGIDMIAREPLHTPGKTYALAMGLAMGMLP ILVPGLYQNFPAGVQMVFGNGMAAGTLTAILVNSLFNWSEKRTQARVKS" misc_feature complement(3816603..3817919) /locus_tag="STM3631" /note="Xanthine/uracil permease [Nucleotide transport and metabolism]; Region: UraA; COG2233" /db_xref="CDD:441834" regulatory complement(3817921..3817926) /regulatory_class="ribosome_binding_site" /locus_tag="STM3631" /note="putative RBS for STM3631; RegulonDB:STMS1H003616" gene complement(3817980..3819112) /locus_tag="STM3632" /db_xref="GeneID:1255156" CDS complement(3817980..3819104) /locus_tag="STM3632" /codon_start=1 /transl_table=11 /product="putative PQQ enzyme repeat protein" /protein_id="NP_462534.1" /db_xref="GeneID:1255156" /translation="MAHLTQDSTFTLGRRLAGLIYADKAKSFGGYTLFAPQTAEGRVY LVDEQGEVAHQWQLPVRAGRDAVLLPNGNLGYNGSHRTSANLYPAWDLWHGGDFYEVT PDNEIVWHYEDIYHHHDAQWLANGNLLYTAASPLPADIAARVTGGDPRRDAPDGIIQS DVVKEVNRDGEVVWEWRAWEHLNPEDFPIHDIFDRRHWPMINGLSVTRDGLVLMSLRT TSGVIAVDKESGKVIWHAGPEVVAQQHTPVEMENGSILVFDNGNLRPGVTSPHSTVLE FDPQTKAITWQYRDIFPPAFFSPYMGSAQRLANGNTFICESAFGRLFEVTPEGETVWE YIIPFFNEYPEHLSKGIIPGKQNSAFRAHRYAADAISWLK" misc_feature complement(3818076..>3818768) /locus_tag="STM3632" /note="Arylsulfotransferase (ASST); Region: Arylsulfotrans; cl26042" /db_xref="CDD:421257" regulatory complement(3819107..3819112) /regulatory_class="ribosome_binding_site" /locus_tag="STM3632" /note="putative RBS for STM3632; RegulonDB:STMS1H003617" gene 3819246..3820261 /locus_tag="STM3633" /db_xref="GeneID:1255157" regulatory 3819246..3819251 /regulatory_class="ribosome_binding_site" /locus_tag="STM3633" /note="putative RBS for STM3633; RegulonDB:STMS1H003618" CDS 3819254..3820261 /locus_tag="STM3633" /note="lacI family; similar to E. coli regulator for rbs operon (AAC76776.1); Blastp hit to AAC76776.1 (330 aa), 27% identity in aa 2 - 304" /codon_start=1 /transl_table=11 /product="putative bacterial regulatory protein" /protein_id="NP_462535.1" /db_xref="GeneID:1255157" /translation="MAVQNKKRAKLIDVARHAGVSPGTVSNALHNTRFVEPQTRRRIE EAIAALNYTPNIRARQLRTGKTNTIALLSSVPLAIASGASRLGFMMEVALTSAMMALE KQHALILVPPGANPLDAVSFDAAILIEPAENDPQLQALAQAGIPCVTIGRTPGTDTPV PWVELHSAATAQLLLTHLETSGASKCALFVGNTRRTSVLESEAAYQRWCAGRQAPVVY SLNESEGENAGYQAAQQLLQAHPDVDGVLVLIDTFASGAVRAFQEQAVAIPERMRVVT RYDGIRARESLPPLTAVNMHLDEVARQAITLLFAVLSGEKISYSDGIMPELVVRASTC R" misc_feature 3819278..3819475 /locus_tag="STM3633" /note="helix_turn _helix lactose operon repressor; Region: HTH_LACI; smart00354" /db_xref="CDD:197675" misc_feature order(3819311..3819325,3819329..3819334,3819341..3819343, 3819356..3819361,3819368..3819370,3819407..3819409, 3819416..3819418,3819425..3819430,3819434..3819439) /locus_tag="STM3633" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature 3819407..3819436 /locus_tag="STM3633" /note="domain linker motif [active]" /db_xref="CDD:143331" misc_feature 3819455..3820249 /locus_tag="STM3633" /note="ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors; Region: PBP1_LacI-like; cd06287" /db_xref="CDD:380510" misc_feature order(3819455..3819457,3819518..3819526,3819533..3819538, 3819542..3819547,3819566..3819580,3819584..3819586, 3819590..3819592,3819599..3819601,3819608..3819616, 3819932..3819934,3820016..3820018,3820028..3820030, 3820037..3820042) /locus_tag="STM3633" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:380510" misc_feature order(3819515..3819520,3819527..3819529,3819635..3819637, 3819704..3819706,3819746..3819748,3819854..3819856, 3819917..3819919,3820085..3820087,3820136..3820138) /locus_tag="STM3633" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:380510" gene complement(3820424..3820497) /gene="proK" /locus_tag="STM3634" /db_xref="GeneID:1255158" tRNA complement(3820424..3820497) /gene="proK" /locus_tag="STM3634" /product="tRNA-Pro" /db_xref="GeneID:1255158" gene complement(3820588..3822293) /gene="yhjW" /locus_tag="STM3635" /db_xref="GeneID:1255159" CDS complement(3820588..3822279) /gene="yhjW" /locus_tag="STM3635" /note="membrane-protein YHJW. (SW:YHJW_SALTY)" /codon_start=1 /transl_table=11 /product="putative membrane-associated metal-dependent hydrolase" /protein_id="NP_462536.1" /db_xref="GeneID:1255159" /translation="MRYIKSMTQQKLSFLLALYIGLFMNCAVFYRRFGSYAQEFTIWK GLSAVVELGATVLVTFFLLRLLSLFGRRVWRVLATLVVLFSAGASYYMTFLNVVIGYG IIASVMTTDIDLSKEVVGLHFVLWLIAVSVLPLIFIWSNHCRYTLLRQLRTPGQRFRS AAVVVLAGVMVWAPIRLLDIQQKKVERATGIDLPSYGGVVANSYLPSNWLSALGLYAW AQVDESSDNNSLINPARKFTYVAPKDGDDTYVVFIIGETTRWDHMGIFGYERNTTPKL AQEKNLAAFRGYSCDTATKLSLRCMFVREGGADNNPQRTLKEQNVFAVLKQLGFSSDL YAMQSEMWFYSNTMADNISYREQIGAEPRNRGKTVDDMLLIDEMQNSLAQNPEGKHLI ILHTKGSHFNYTQRYPRSYAQWKPECIGVDSGCTKAQMINSYDNSVTYVDHFITSVFD QLRDKKAIVFYAADHGESINEREHLHGTPRNMAPPEQFRVPMLVWMSDKYLASPQHAQ MFAHLKQQAEIKVPRRHVELYDTIMGCLGYTSPNGGINQNNNWCHIPDVQKVAAK" misc_feature complement(3820606..3822279) /gene="yhjW" /locus_tag="STM3635" /note="kdo(2)-lipid A phosphoethanolamine 7''-transferase; Region: PRK11560" /db_xref="CDD:183198" regulatory complement(3822288..3822293) /regulatory_class="ribosome_binding_site" /gene="yhjW" /locus_tag="STM3635" /note="putative RBS for yhjW; RegulonDB:STMS1H003620" gene complement(3822497..3823031) /gene="lpfE" /locus_tag="STM3636" /db_xref="GeneID:1255160" CDS complement(3822497..3823024) /gene="lpfE" /locus_tag="STM3636" /note="PFE protein precursor (SW:LPFE_SALTY)" /codon_start=1 /transl_table=11 /product="long polar fimbrial minor protein" /protein_id="NP_462537.1" /db_xref="GeneID:1255160" /translation="MKNLHALMPACLLLTASAMAAPSNIGSAGDIHFTITIKAATCEL ENDSIDVNMETVVLQRPVKVGKELNQKNFSIGLKDCAYATKASVTMDGSPDPTDPSLF ALDSGGATGVALKIKTSGGEQQYPSSTDSTPVEHTVWFDGTNKLNYIASYVPVKPDAT VGTANATVNFSVTYE" misc_feature complement(3822500..3823024) /gene="lpfE" /locus_tag="STM3636" /note="long polar fimbrial protein LpfE; Provisional; Region: PRK15205" /db_xref="CDD:237923" regulatory complement(3823026..3823031) /regulatory_class="ribosome_binding_site" /gene="lpfE" /locus_tag="STM3636" /note="putative RBS for lpfE; RegulonDB:STMS1H003621" gene complement(3823030..3824116) /gene="lpfD" /locus_tag="STM3637" /db_xref="GeneID:1255161" CDS complement(3823030..3824109) /gene="lpfD" /locus_tag="STM3637" /note="LPFD protein precursor. (SW:LPFD_SALTY)" /codon_start=1 /transl_table=11 /product="long polar fimbrial operon protein" /protein_id="NP_462538.1" /db_xref="GeneID:1255161" /translation="MLKKLIMFTGLLGGSVLFSGQALAAADFGPCTPEGGTHIFSATI NKTVSDTSKNTTGATFVDFDSWNLGGTYAMSCECPDDTSLINDTLFKAVVPLAFVTNI ESRSYYQINNNIAIASDVLISGGRGEYVNTPFENVGNLTNNRSQCSQNASSKDAIWTS GGKGHLSLYILHPFVGESIIPSTKIMDLFVTKKPSVYGSIPASSVYISGSITVPQGCE LSSGSTLEIPFGEFKATDFKDRKGQVAKNATKFTKELQFKCTNISDGVKIFLRIEGMP NANDSNAIDMGNPDIGAVIEGANGKILVPNDASVNQELSVSGLVDDTHRTASTTISAY PISTTGKLPAAGDFEGIATMRIDVE" misc_feature complement(3823033..3824109) /gene="lpfD" /locus_tag="STM3637" /note="long polar fimbrial protein LpfD; Provisional; Region: PRK15206" /db_xref="CDD:237924" regulatory complement(3824111..3824116) /regulatory_class="ribosome_binding_site" /gene="lpfD" /locus_tag="STM3637" /note="putative RBS for lpfD; RegulonDB:STMS1H003622" gene complement(3824127..3826668) /gene="lpfC" /locus_tag="STM3638" /db_xref="GeneID:1255162" CDS complement(3824127..3826655) /gene="lpfC" /locus_tag="STM3638" /note="outer membrane usher protein LPFC precursor. (SW:LPFC_SALTY)" /codon_start=1 /transl_table=11 /product="long polar fimbrial outer membrane usher protein" /protein_id="NP_462539.1" /db_xref="GeneID:1255162" /translation="MTWTHLPLGNKTSRFTQSALALMIAGTLPAYAGTFNPRFLEDVP GIDQHVDLSMYESNKAEHLPGKYRVSVVVNEKKMESRTLEFKAATEAQRAKMGESLVP CLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDIIPQAASHFDFADQTLIMSFPQAAM KQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHDSETSYNSDSYYLNLRSGMNLG AWRLRNYSTWTRNDGNNTWDNIGTSLSRAIVPLKSQLTLGDTSTAGDIFDSVQMRGVQ LTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYVIYRTFVQPGAFEINDLYPTSN SGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLSAGEYRAGNYNSAEPKFGQL DAMYGLPYGFTVYGGAIFSDDYYSLAGGLGKNFGYIGAISIDVTQAKSKLANEENSEG QSYRFLYSKSFNSGTDFRLLGYKYSTSGYYTFQEATDVRSDADSSYSQYHKRSQIQGN VTQQLGAWGSVYFNVTQQDYWNDEGKQRSLNAGYNGRIGRVNYSVAYTWTKSPEWDES DRLLSFSMSIPLGRVWSNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGV GNSGSVNLDYQGGVGSASLGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAII SAPGARGAHVINNGGVEVDWMGNAVVPYLTPYRETEVSLRSDSLNNQVDLDTASVNVV PTRGAIVRARFDTRVGYRVLMNLTQANGKAVPFGATATLLDTTKESSSIVGEDGQLYI SGMPEKGALQVNWGKDQAQQCRVAFTLPEQQDNTGVVMANAVCR" misc_feature complement(3824130..3826655) /gene="lpfC" /locus_tag="STM3638" /note="outer membrane usher protein LpfC; Region: PRK15207" /db_xref="CDD:185129" regulatory complement(3826663..3826668) /regulatory_class="ribosome_binding_site" /gene="lpfC" /locus_tag="STM3638" /note="putative RBS for lpfC; RegulonDB:STMS1H003623" gene complement(3826678..3827389) /gene="lpfB" /locus_tag="STM3639" /db_xref="GeneID:1255163" CDS complement(3826678..3827376) /gene="lpfB" /locus_tag="STM3639" /note="chaperone protein LPFB precursor. (SW:LPFB_SALTY)" /codon_start=1 /transl_table=11 /product="long polar fimbrial chaperone" /protein_id="NP_462540.1" /db_xref="GeneID:1255163" /translation="MNRSRLISCTALVLALIAQNSFAGGVALSSTRVIYDGSRKEASL TVNNKSTTDEFLIQSWIDDANGNKKTPFIITPPLFKLSPTKNNVLRIVNTTNTLPQDR ESVYWINVKAIPAKSEDAEAKNVLQIAVRTRLKLFYRPAGLKGNSMDGWNKLQFTSAG ANQIKVENPSAFNLTFNKFYANGRDIEKTGMVPAKGSLNIELPAGTGKVSEVKYNIIN DFGTAGDMLTQRVN" misc_feature complement(3826681..3827358) /gene="lpfB" /locus_tag="STM3639" /note="molecular chaperone LpfB; Region: PRK15208" /db_xref="CDD:237925" regulatory complement(3827384..3827389) /regulatory_class="ribosome_binding_site" /gene="lpfB" /locus_tag="STM3639" /note="putative RBS for lpfB; RegulonDB:STMS1H003624" gene complement(3827461..3827997) /gene="lpfA" /locus_tag="STM3640" /db_xref="GeneID:1255164" CDS complement(3827461..3827997) /gene="lpfA" /locus_tag="STM3640" /note="long polar fimbria protein A precursor. (SW:LPFA_SALTY)" /codon_start=1 /transl_table=11 /product="long polar fimbria" /protein_id="NP_462541.1" /db_xref="GeneID:1255164" /translation="MEFLMKKVVFALSALAVVSTSAFAAESGDGTIKFTGEIVDAPCV VSTDSQNQEVVLGQVKKNIFKAIGDKSSSKPFQIKLEDCDITSNTKVNVSFNGVGDTD DATLVSVNTEAGAATGVGIGIYDNANKLVEMNTGKSTTTLAAGQTVLYYTANYVATKD TVTTGYGNAEVDFNLSYE" misc_feature complement(3827464..3827985) /gene="lpfA" /locus_tag="STM3640" /note="long polar fimbrial protein LpfA; Provisional; Region: PRK15209" /db_xref="CDD:185131" gene complement(3828503..3829221) /gene="yhjY" /locus_tag="STM3641" /db_xref="GeneID:1255165" CDS complement(3828503..3829207) /gene="yhjY" /locus_tag="STM3641" /note="similar to E. coli putative lipase (AAC76572.1); Blastp hit to AAC76572.1 (234 aa), 72% identity in aa 3 - 234" /codon_start=1 /transl_table=11 /product="putative lipase" /protein_id="NP_462542.1" /db_xref="GeneID:1255165" /translation="MIVRKRRGRRTLRCLAGLMACSFFINTTYAWQQEYIAEAAPGHT TERYTWDSDHQPNYNDILAERIQSTQNTVGPVLSLADETPLDATSGISMGWNFPLSRR VTTGPVAALHYDGSTSSMYNEYGDSATTLAFTDPLWHASVSTLGWRVNSQFGDVRPWA QISYNQQFGENIWKAQSGLSRMTAGNQAGNWLDVTVGADVLLNPHLAAYAAFSQAENS ATDSDYLYTLGVSARF" misc_feature complement(3828506..>3828940) /gene="yhjY" /locus_tag="STM3641" /note="Uncharacterized conserved protein YhjY, contains autotransporter beta-barrel domain [General function prediction only]; Region: YhjY; COG5571" /db_xref="CDD:444313" regulatory complement(3829216..3829221) /regulatory_class="ribosome_binding_site" /gene="yhjY" /locus_tag="STM3641" /note="putative RBS for yhjY; RegulonDB:STMS1H003625" gene 3829354..3829945 /gene="tag" /locus_tag="STM3642" /db_xref="GeneID:1255166" regulatory 3829354..3829359 /regulatory_class="ribosome_binding_site" /gene="tag" /locus_tag="STM3642" /note="putative RBS for tag; RegulonDB:STMS1H003626" CDS 3829364..3829945 /gene="tag" /locus_tag="STM3642" /EC_number="3.2.2.20" /note="similar to E. coli 3-methyl-adenine DNA glycosylase I, constitutive (AAC76573.1); Blastp hit to AAC76573.1 (187 aa), 85% identity in aa 1 - 186" /codon_start=1 /transl_table=11 /product="constitutive 3-methyl-adenine DNA glycosylase I" /protein_id="NP_462543.1" /db_xref="GeneID:1255166" /translation="MQRCDWVSQDPLYIAYHDNEWGVPETDSRKLFEMICLEGQQAGL SWITVLKKRENYRACFHQFDPVRIAAMQEEDVEHLLQNTGIIRHRGKIQAIISNARAW LAMEQNGESFADFVWSFVDGQPQITQAASLDEIPTSTPASDALAKALKKRGFKFVGTT ICYSFMQACGLVNDHITGCFCHPGEKHDSQIPE" misc_feature 3829364..3829924 /gene="tag" /locus_tag="STM3642" /note="DNA-3-methyladenine glycosylase I; Region: PRK10353" /db_xref="CDD:182401" gene 3829910..3830363 /gene="yiaC" /locus_tag="STM3643" /db_xref="GeneID:1255167" regulatory 3829910..3829915 /regulatory_class="ribosome_binding_site" /gene="yiaC" /locus_tag="STM3643" /note="putative RBS for yiaC; RegulonDB:STMS1H003627" CDS 3829923..3830363 /gene="yiaC" /locus_tag="STM3643" /note="similar to E. coli orf, hypothetical protein (AAC76574.1); Blastp hit to AAC76574.1 (146 aa), 60% identity in aa 1 - 145" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_462544.1" /db_xref="GeneID:1255167" /translation="MIRKSQSEDMASILALWMKSTIYAHPFIEERYWHESEAIVRDVY LPAAQTWVWEENGQLKGFVSVLEARFVGALFVAPDALRHGIGKALLEYVQQRFPLLSL EVYQKNQSAVNFYHALGFRIEDSAWQEDTAHPTWIMSWQADQTP" misc_feature 3829923..3830357 /gene="yiaC" /locus_tag="STM3643" /note="putative acetyltransferase; Provisional; Region: PRK10562" /db_xref="CDD:236715" misc_feature order(3830142..3830150,3830178..3830183) /gene="yiaC" /locus_tag="STM3643" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene complement(3830332..3832677) /gene="bisC" /locus_tag="STM3644" /db_xref="GeneID:1255168" CDS complement(3830332..3832665) /gene="bisC" /locus_tag="STM3644" /EC_number="1.-.-.-" /note="similar to E. coli biotin sulfoxide reductase (AAC76575.1); Blastp hit to AAC76575.1 (739 aa), 86% identity in aa 2 - 739" /codon_start=1 /transl_table=11 /product="biotin sulfoxide reductase" /protein_id="NP_462545.1" /db_xref="GeneID:1255168" /translation="MTHAPSRHSVLTAAHWGPVRVETDGERIFASYGELPTAHQNSLQ TVVHDQVHSKTRVRFPMVRKGFLASPDKPQGIRGQDEFVRVSWDDALDLIHAQHKRIR ESYGPSSIFAGSYGWRSNGVLHKAATLLQRYMALAGGYTGHLGDYSTGAAQAIMPYVV GGNEVYQQQTSWPVVLEHSEVVVLWSANPLNTLKIAWNASDEQGLDYFAALRQSGKRL ICIDPMRSESVDFFGDKMEWIAPHMGTDVALMLGIAHTLVENGWQDEAFLARCTTGYD RFADYLLGTTDGTAKTAEWAAEICGVSAVKIRELAEIFHHNTTMLMAGWGMQRQQFGE QKHWMIVTLAAMLGQIGTPGGGFGFSYHFANGGNPTRRAAVLASMQGSIPGGVDAVDK IPVARIVEALENPGGFYQHNGMDRRFPDIRFIWWAGGANFTHHQDTNRLIRAWQKPEL VVISECFWTAAAKHADIVLPATTSYERNDLTMTGDYSNQHLAPMKQVVSPRWEARNDF DVFAELSERWEAGGYARFTEGKSELAWLETFYNIAAQRGASQGVTLPPFAAFWQANRL LEMPENPANAQFVRFADFRRDPDNHPLKTASGKIEIYSARIASYGYADCPGHPMWLAP DEWHGNADAGQVQLLSAHPAHRLHSQLNYSSLRERYAVAGREPVTIHPQDATTRGIVD GDTVRVWNHRGQVLAGAVVTDGIRPGVICIHEGAWPDPEPTAGGICKNGAVNVLTKDL PSSRLGNGCAGNTALVWFEKYTGPALPLTAFDPPANS" misc_feature complement(3830341..3832629) /gene="bisC" /locus_tag="STM3644" /note="molybdopterin guanine dinucleotide-containing S/N-oxide reductases; Region: bisC_fam; TIGR00509" /db_xref="CDD:273110" regulatory complement(3832672..3832677) /regulatory_class="ribosome_binding_site" /gene="bisC" /locus_tag="STM3644" /note="putative RBS for bisC; RegulonDB:STMS1H003628" gene 3832807..3833480 /gene="yiaD" /locus_tag="STM3645" /db_xref="GeneID:1255169" regulatory 3832807..3832812 /regulatory_class="ribosome_binding_site" /gene="yiaD" /locus_tag="STM3645" /note="putative RBS for yiaD; RegulonDB:STMS1H003629" CDS 3832818..3833480 /gene="yiaD" /locus_tag="STM3645" /note="similar to E. coli putative outer membrane protein (AAC76576.1); Blastp hit to AAC76576.1 (219 aa), 94% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_462546.1" /db_xref="GeneID:1255169" /translation="MKKRVFVIAAIVSGALAVSGCTTNPYTGEREAGKSGIGAGIGSL VGAGIGALSSSKKDRGKGALIGAAAGAALGGGVGYYMDVQEAKLRDKMRGTGVSVTRS GDNIILNMPNNVTFDSSSATLKPAGANTLTGVAMVLKEYPKTAVNVVGYTDSTGSHDL NMRLSQQRADSVASSLITQGVDASRIRTSGMGPANPIASNSTAEGKAQNRRVEITLSP LQ" misc_feature 3832818..3833474 /gene="yiaD" /locus_tag="STM3645" /note="OmpA family lipoprotein; Region: PRK10510" /db_xref="CDD:182507" gene 3833687..3834673 /gene="yiaE" /locus_tag="STM3646" /db_xref="GeneID:1255170" regulatory 3833687..3833692 /regulatory_class="ribosome_binding_site" /gene="yiaE" /locus_tag="STM3646" /note="putative RBS for yiaE; RegulonDB:STMS1H003630" CDS 3833699..3834673 /gene="yiaE" /locus_tag="STM3646" /note="similar to E. coli putative dehydrogenase (AAC76577.1); Blastp hit to AAC76577.1 (328 aa), 83% identity in aa 5 - 327" /codon_start=1 /transl_table=11 /product="2-keto-D-gluconate reductase" /protein_id="NP_462547.1" /db_xref="GeneID:1255170" /translation="MKPSIILYKTLPDDLLHRLEAHFTVTQVPNLHPETVAQHAQAFA SAQGLLGASETVNRALLEKMPALRAASTISVGYDNVEVDALTARKIVLMHTPAVLTET VADTVMALMLATARRVVDVAERVKAGEWTESIGPAWFGVDVHHKTLGIVGMGRIGMAL AQRAHFGFTMPVLYHARRRHQEAEDRFNARYCDLDTLLQEADFVCVILPLTAETRHLF GATQFARMKSSAIFINAGRGPVVDENALIAALQNGEIYAAGLDVFEQEPLSVDSPLLN MSNVVAVPHIGSATHETRYNMMACAVDNLIDALQGKIEKNCVNPQAAG" misc_feature 3833699..3834667 /gene="yiaE" /locus_tag="STM3646" /note="glyoxylate/hydroxypyruvate reductase GhrB; Region: PRK15409" /db_xref="CDD:185307" misc_feature order(3833723..3833728,3833732..3833734,3833852..3833857, 3833915..3833917,3833999..3834004,3834011..3834016, 3834020..3834025,3834032..3834034,3834044..3834046, 3834050..3834052,3834074..3834076,3834080..3834082, 3834086..3834088,3834095..3834115,3834116..3834130, 3834182..3834187,3834197..3834202,3834494..3834499, 3834521..3834523,3834539..3834559,3834563..3834574, 3834578..3834580) /gene="yiaE" /locus_tag="STM3646" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:240626" misc_feature order(3833852..3833854,3833918..3833926,3833993..3833995, 3834407..3834409,3834551..3834553,3834560..3834562) /gene="yiaE" /locus_tag="STM3646" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:240626" misc_feature order(3833921..3833926,3834005..3834007,3834152..3834166, 3834221..3834229,3834236..3834238,3834317..3834325, 3834335..3834340,3834401..3834409,3834479..3834484, 3834551..3834553,3834557..3834562) /gene="yiaE" /locus_tag="STM3646" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:240626" gene complement(3834723..3835447) /gene="yiaF" /locus_tag="STM3647" /db_xref="GeneID:1255171" CDS complement(3834723..3835433) /gene="yiaF" /locus_tag="STM3647" /note="similar to E. coli orf, hypothetical protein (AAC76578.1); Blastp hit to AAC76578.1 (276 aa), 88% identity in aa 41 - 276" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_462548.1" /db_xref="GeneID:1255171" /translation="MATGKSCSRWFAPVVALLMVFSLSGCFDKEGDQRKAFVDFLQNT AMRSGERLPTLTADQKKQFGPFVSDYAILYGYSQQVNQAMDSGLRPVVDSVNAIRVPQ DYMTQREPLRQANGSLGVLAQQLQNAKLQADAAHGALKQADDLKPVFDQVYKKVVTVP ADALQPLIPAAQIFTQQLVQVGDYIAQQGEQVSFVANGIQFPTSQQASQYNALIGPLA SQHQAFNQAWTAAVNATQ" misc_feature complement(3834741..3835394) /gene="yiaF" /locus_tag="STM3647" /note="Protein of unknown function (DUF3053); Region: DUF3053; pfam11254" /db_xref="CDD:431761" regulatory complement(3835442..3835447) /regulatory_class="ribosome_binding_site" /gene="yiaF" /locus_tag="STM3647" /note="putative RBS for yiaF; RegulonDB:STMS1H003631" gene 3835860..3836162 /gene="yiaG" /locus_tag="STM3648" /db_xref="GeneID:1255172" regulatory 3835860..3835865 /regulatory_class="ribosome_binding_site" /gene="yiaG" /locus_tag="STM3648" /note="putative RBS for yiaG; RegulonDB:STMS1H003632" CDS 3835872..3836162 /gene="yiaG" /locus_tag="STM3648" /note="similar to E. coli orf, hypothetical protein (AAC76579.1); Blastp hit to AAC76579.1 (96 aa), 79% identity in aa 1 - 96" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_462549.1" /db_xref="GeneID:1255172" /translation="MEYKDPMFELLSSLEQIVFKDETRKITLTQKPNPFTEFEQLRRG TGLKTDEFARALGVTVAMVQEWESKREKPTPAELKLMRLIQANPRLSKQLME" misc_feature 3835872..3836159 /gene="yiaG" /locus_tag="STM3648" /note="HTH-type transcriptional regulator; Region: PRK10072" /db_xref="CDD:182222" misc_feature order(3835995..3835997,3836070..3836072) /gene="yiaG" /locus_tag="STM3648" /note="salt bridge [active]" /db_xref="CDD:238045" misc_feature order(3836016..3836021,3836052..3836054,3836061..3836063, 3836073..3836078) /gene="yiaG" /locus_tag="STM3648" /note="sequence-specific DNA binding site [nucleotide binding]; other site" /db_xref="CDD:238045" gene 3836438..3836663 /gene="cspA" /locus_tag="STM3649" /db_xref="GeneID:1255173" regulatory 3836438..3836443 /regulatory_class="ribosome_binding_site" /gene="cspA" /locus_tag="STM3649" /note="putative RBS for cspA; RegulonDB:STMS1H003633" CDS 3836451..3836663 /gene="cspA" /locus_tag="STM3649" /note="transcriptional activator of hns; cold shock protein CSPA. (SW:CSPA_SALTY)" /codon_start=1 /transl_table=11 /product="major cold shock protein 7.4" /protein_id="NP_462550.1" /db_xref="GeneID:1255173" /translation="MSGKMTGIVKWFNADKGFGFITPDDGSKDVFVHFSAIQNDGYKS LDEGQKVSFTIESGAKGPAAGNVTSL" misc_feature 3836451..3836660 /gene="cspA" /locus_tag="STM3649" /note="RNA chaperone/antiterminator CspA; Region: PRK10354" /db_xref="CDD:182402" misc_feature order(3836481..3836483,3836508..3836510,3836541..3836543, 3836628..3836630) /gene="cspA" /locus_tag="STM3649" /note="DNA-binding site [nucleotide binding]; DNA binding site" /db_xref="CDD:239905" misc_feature order(3836499..3836519,3836538..3836549) /gene="cspA" /locus_tag="STM3649" /note="RNA-binding motif [active]" /db_xref="CDD:239905" gene 3836830..3837376 /locus_tag="STM3650" /db_xref="GeneID:1255174" regulatory 3836830..3836835 /regulatory_class="ribosome_binding_site" /locus_tag="STM3650" /note="putative RBS for STM3650; RegulonDB:STMS1H003634" CDS 3836837..3837376 /locus_tag="STM3650" /codon_start=1 /transl_table=11 /product="putative periplasmic or exported protein" /protein_id="NP_462551.1" /db_xref="GeneID:1255174" /translation="MSKSSWLLLLGLCASGSALAASSESAFLAQHGLAGKTVEQIVDT IDQTPQSRPLPYSASITSTELKLSDGEQIYTLPLGDKFYLSFAPYEWRTHPCFNHSLS GCQGEMPNKPFTVKVTDSKGAVIVQKEMQSYRNGFIGVWLPRNMEGTLEVSYNGKTAS HAIATSDDSQTCLTELPLR" misc_feature 3836840..3837370 /locus_tag="STM3650" /note="CueP family metal-binding protein; Region: CueP_fam; cl40495" /db_xref="CDD:477368" gene complement(3837748..3838240) /locus_tag="STM3651" /db_xref="GeneID:1255175" CDS complement(3837748..3838233) /locus_tag="STM3651" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_462552.1" /db_xref="GeneID:1255175" /translation="MGRVTAPEPLSAFHQVAEFVSGEAVLDDWLKQKGLKNQALGAAR TFVVCKKDTKQVAGFYSLATGSVNHTEATGNLRRNMPDPIPVIILARLAVDLSFHGKG LGADLLHDAVLRCYRVAENIGVRAIMVHALTEEAKNFYIHHGFKSSQTQQRTLFLRLP Q" misc_feature complement(3837766..>3837981) /locus_tag="STM3651" /note="N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2) [Transcription, General function prediction only]; Region: PhnO; COG0454" /db_xref="CDD:440222" gene complement(3838221..3838508) /locus_tag="STM3652" /db_xref="GeneID:1255176" CDS complement(3838221..3838508) /locus_tag="STM3652" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462553.1" /db_xref="GeneID:1255176" /translation="MLYKGCLMKSDVQLNLRAKESQRALIDAAAEILHKSRTDFILET ACQAAEKVILDRRVFNFNDEQYEEFINLLDAPVADDPVIEKLLARKPQWDV" misc_feature complement(3838227..3838487) /locus_tag="STM3652" /note="Uncharacterized conserved protein, DUF1778 family [Function unknown]; Region: COG4453" /db_xref="CDD:443551" regulatory complement(3838235..3838240) /regulatory_class="ribosome_binding_site" /locus_tag="STM3652" /note="putative RBS for STM3651; RegulonDB:STMS1H003635" gene complement(3838686..3839161) /locus_tag="STM3653" /db_xref="GeneID:1255177" CDS complement(3838686..3839153) /locus_tag="STM3653" /note="similar to E. coli orf, hypothetical protein (AAC73338.1); Blastp hit to AAC73338.1 (150 aa), 33% identity in aa 4 - 145" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_462554.1" /db_xref="GeneID:1255177" /translation="MKIRRFSNGDEISLFRVFFSSVHTIASHYYTREQIDAWAPADID LERWANHIKELQPFVVELDGEIAGYADVQPNGYIDHFFVSGTYSRQGVGTLLMNCIHE EARQRGISELTSNVSKAAEVFFLRHGFHIVERGFPICRGVTLQNALMRKCLAK" misc_feature complement(3838701..3839153) /locus_tag="STM3653" /note="NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, from bacterial antibiotic resistance to circadian rhythms in mammals. Members...; Region: N-Acyltransferase superfamily: Various enyzmes that characteristicly catalyze the transfer of an acyl group to a substrate; cl17182" /db_xref="CDD:473072" misc_feature complement(order(3838872..3838877,3838905..3838913)) /locus_tag="STM3653" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" regulatory complement(3839156..3839161) /regulatory_class="ribosome_binding_site" /locus_tag="STM3653" /note="putative RBS for STM3653; RegulonDB:STMS1H003636" gene complement(3839295..3839630) /locus_tag="STM3654" /note="pseudogene; in-frame stop following codon 23" /pseudo /db_xref="GeneID:1255178" gene complement(3839782..3841860) /gene="glyS" /locus_tag="STM3655" /db_xref="GeneID:1255179" CDS complement(3839782..3841851) /gene="glyS" /locus_tag="STM3655" /EC_number="6.1.1.14" /note="similar to E. coli glycine tRNA synthetase, beta subunit (AAC76583.1); Blastp hit to AAC76583.1 (689 aa), 92% identity in aa 1 - 689" /codon_start=1 /transl_table=11 /product="glycine tRNA synthetase, beta subunit" /protein_id="NP_462555.1" /db_xref="GeneID:1255179" /translation="MSEKTFLVEIGTEELPPKALRSLAESFAANFTAELDNAGLAHGN VEWFAAPRRLALKVANLAESQPDREVEKRGPAIAQAFDAEGKPSKAAEGWARGCGITV DQAERLKTDKGEWLLYRAHVKGESTEALVPNMVATSLAKLPIPKLMRWGASDVHFVRP VHTVTLLLGDKVIPATILGIQSDRVIRGHRFMGEPEFTIDNADQYPQILLERGKVIAD YEARKAKIKADAEEAARKIGGNADLSESLLEEVASLVEWPVVLTAKFEEKFLAVPAEA LVYTMKGDQKYFPVYDNAGKLLPNFIFVANIESKDPTQIISGNEKVVRPRLADAEFFF NTDRKKRLEDHLPRLQTVLFQQQLGTLRDKTDRIQALAGWIAGQIGADVNHATRAGLL SKCDLMTNMVFEFTDTQGVMGMHYARHDGEAEDVAVALNEQYQPRFAGDDLPSNPVAC ALAIADKMDTLAGIFGIGQHPKGDKDPFALRRAALGVLRIIVEKNLALDLQTLTEEAV RLYGDKLTNANVVDDVIDFMLGRFRAWYQDEGYTVDTIQAVLARRPTRPADFDARMKA VSHFRTLEEASALAAANKRVSNILAKATEPLNDIVHASVLKEAAEIELARHLVVLRDK LQPYFADGRYQEALIELAALRAPVDEFFENVMVNAEEKDIRINRLTLLSKLRELFLQV ADISLLQ" misc_feature complement(3839785..3841842) /gene="glyS" /locus_tag="STM3655" /note="Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]; Region: GlyS; COG0751" /db_xref="CDD:440514" regulatory complement(3841855..3841860) /regulatory_class="ribosome_binding_site" /gene="glyS" /locus_tag="STM3655" /note="putative RBS for glyS; RegulonDB:STMS1H003637" gene complement(3841861..3842783) /gene="glyQ" /locus_tag="STM3656" /db_xref="GeneID:1255180" CDS complement(3841861..3842772) /gene="glyQ" /locus_tag="STM3656" /EC_number="6.1.1.14" /note="similar to E. coli glycine tRNA synthetase, alpha subunit (AAC76584.1); Blastp hit to AAC76584.1 (303 aa), 99% identity in aa 1 - 303" /codon_start=1 /transl_table=11 /product="glycine tRNA synthetase, alpha subunit" /protein_id="NP_462556.1" /db_xref="GeneID:1255180" /translation="MQKFDTRTFQGLILTLQDYWARQGCTIVQPLDMEVGAGTSHPMT CLRALGPEPMATAYVQPSRRPTDGRYGENPNRLQHYYQFQVVIKPSPDNIQELYLGSL KELGMDPTIHDIRFVEDNWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGLECKPVT GEITYGLERLAMYIQGVDSVYDLVWSDGPLGKTTYGDVFHQNEVEQSTYNFEYADVDF LFTCFEQYEKEAQQLLALENPLPLPAYERILKAAHSFNLLDARKAISVTERQRYILRI RTLTKAVAEAYYASREALGFPMCNKDK" misc_feature complement(3841897..3842760) /gene="glyQ" /locus_tag="STM3656" /note="glycyl-tRNA synthetase subunit alpha; Validated; Region: glyQ; PRK09348" /db_xref="CDD:236473" misc_feature complement(order(3842023..3842025,3842035..3842037, 3842044..3842055,3842065..3842067,3842077..3842079, 3842086..3842088,3842095..3842100,3842107..3842112, 3842119..3842121,3842128..3842130,3842134..3842136, 3842155..3842160,3842167..3842169,3842218..3842220, 3842536..3842538,3842584..3842586,3842596..3842598, 3842623..3842625,3842671..3842682,3842686..3842688, 3842692..3842697,3842719..3842721,3842731..3842733, 3842743..3842745)) /gene="glyQ" /locus_tag="STM3656" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238375" misc_feature complement(3842677..3842700) /gene="glyQ" /locus_tag="STM3656" /note="motif 1; other site" /db_xref="CDD:238375" misc_feature complement(order(3842266..3842271,3842275..3842280, 3842284..3842289,3842335..3842337,3842347..3842352, 3842515..3842523,3842527..3842529,3842533..3842535, 3842581..3842583,3842656..3842658,3842662..3842664)) /gene="glyQ" /locus_tag="STM3656" /note="active site" /db_xref="CDD:238375" misc_feature complement(3842575..3842586) /gene="glyQ" /locus_tag="STM3656" /note="motif 2; other site" /db_xref="CDD:238375" misc_feature complement(3842266..3842277) /gene="glyQ" /locus_tag="STM3656" /note="motif 3; other site" /db_xref="CDD:238375" regulatory complement(3842778..3842783) /regulatory_class="ribosome_binding_site" /gene="glyQ" /locus_tag="STM3656" /note="putative RBS for glyQ; RegulonDB:STMS1H003638" gene complement(3842911..3843217) /locus_tag="STM3657" /db_xref="GeneID:1255181" CDS complement(3842911..3843213) /locus_tag="STM3657" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_462557.1" /db_xref="GeneID:1255181" /translation="MIMKYFCSVMIAIALVGCTATPPPTQKAQQSKVSPTRTLDMEAL CKAQAAQRYNTGAQKIAVTGFEQFQGSYEMRGNTFRKESFVCSFDADGQFLHLSMR" misc_feature complement(3842914..3843138) /locus_tag="STM3657" /note="YsaB-like lipoprotein; Region: YsaB; pfam13983" /db_xref="CDD:404804" regulatory complement(3843212..3843217) /regulatory_class="ribosome_binding_site" /locus_tag="STM3657" /note="putative RBS for STM3657; RegulonDB:STMS1H003639" gene 3843370..3844374 /gene="yiaH" /locus_tag="STM3658" /db_xref="GeneID:1255182" regulatory 3843370..3843375 /regulatory_class="ribosome_binding_site" /gene="yiaH" /locus_tag="STM3658" /note="putative RBS for yiaH; RegulonDB:STMS1H003640" CDS 3843379..3844374 /gene="yiaH" /locus_tag="STM3658" /note="similar to E. coli orf, hypothetical protein (AAC76585.1); Blastp hit to AAC76585.1 (331 aa), 81% identity in aa 1 - 331" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462558.1" /db_xref="GeneID:1255182" /translation="MQPKINWIDNLRGIACLMVVMIHTTTWYITNAHSVSPLNWDIAN VLNSASRVSVPLFFMISGYLFFGERCAQPRHFLRIALCLIFYSVVALAYISLFTSINV ELSLKNVLQKPVFYHLWFFFAITVIYLVSPLIQVKNVSGKMLLMLMVIIGIIANPNTV PQKIGGVEWLPINLYISGDTFYYILYGILGRAIGMMETQKSSLTLICTALFIIAVFVI SRGTLHELRWRGNFADTWYLYCGPMVFICAVSLFTVVKNKLNARTLPGLGLISRHSLG IYGFHALIIHALRTNGLELKRWPPLDIVWVFAATVTGSLLLSMLLQRIDKRKWVS" misc_feature 3843382..3844368 /gene="yiaH" /locus_tag="STM3658" /note="Surface polysaccharide O-acyltransferase WecH [Cell wall/membrane/envelope biogenesis]; Region: WecH; COG3274" /db_xref="CDD:442505" gene complement(3844397..3844762) /gene="yiaB" /locus_tag="STM3659" /db_xref="GeneID:1255183" CDS complement(3844397..3844750) /gene="yiaB" /locus_tag="STM3659" /note="similar to E. coli orf, hypothetical protein (AAC76587.1); Blastp hit to AAC76587.1 (117 aa), 33% identity in aa 15 - 109" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462559.1" /db_xref="GeneID:1255183" /translation="MDDHVARRKRIFGLGMLVVGAVVYLVGLWPGCHTLSEKGYFFAA IVMCGFPVLIRQEHTGNGRLLSRCKSLLLLGIGMVAVGVFNLALAGALKILCLVALGV SIYGTDLYASYSDDE" misc_feature complement(3844433..3844726) /gene="yiaB" /locus_tag="STM3659" /note="Uncharacterized conserved protein, YiaAB domain [Function unknown]; Region: YiaAB; cl46776" /db_xref="CDD:481116" regulatory complement(3844757..3844762) /regulatory_class="ribosome_binding_site" /gene="yiaB" /locus_tag="STM3659" /note="putative RBS for yiaB; RegulonDB:STMS1H003641" gene complement(3844925..3846393) /gene="xylB" /locus_tag="STM3660" /db_xref="GeneID:1255184" CDS complement(3844925..3846379) /gene="xylB" /locus_tag="STM3660" /EC_number="2.7.1.17" /note="similar to E. coli xylulokinase (AAC76588.1); Blastp hit to AAC76588.1 (484 aa), 85% identity in aa 1 - 484" /codon_start=1 /transl_table=11 /product="xylulokinase" /protein_id="NP_462560.1" /db_xref="GeneID:1255184" /translation="MYIGIDLGTSGVKAILLNEQGDVLATHTEKLTVSRPHPLWSEQE PEQWWQATDRAVKGLGRQQSLSGVRALGIAGQMHGATLLDSRQQVLRPAILWNDGRCS EECAWLEKQVPQSRAITGNLMMPGFTAPKLVWVQRHEPDIFYQIDKVLLPKDFLRLRM TGVFASDMSDAAGTMWLDVKKRDWSDVMLNACHLTRQQMPALFEGSDITGTLLPEVAS AWGMPAVPVVAGGGDNAAGAVGVGMIDAGQAMLSLGTSGVYFAVSDGFLSKPESAVHS FCHALPERWHLMSVMLSAASCLDWAAKLTGQENVPALIAAAQQADEHADSIWFLPYLS GERTPHNNPQAKGVFFGLTHQHGPAELARAVLEGVGYALADGMDVVHACGVKPASVTL IGGGARSEYWRQMLSDISGLQLDYRTGGDVGPALGAARLAQIAVNKQTPLADVLPQLP LEQAHYPDAQRHAVYQQRRETFRRLYQQLLPLMS" misc_feature complement(3844928..3846379) /gene="xylB" /locus_tag="STM3660" /note="xylulokinase; Provisional; Region: PRK15027" /db_xref="CDD:184987" regulatory complement(3846388..3846393) /regulatory_class="ribosome_binding_site" /gene="xylB" /locus_tag="STM3660" /note="putative RBS for xylB; RegulonDB:STMS1H003642" gene complement(3846479..3847813) /gene="xylA" /locus_tag="STM3661" /db_xref="GeneID:1255185" CDS complement(3846479..3847801) /gene="xylA" /locus_tag="STM3661" /EC_number="5.3.1.5" /note="similar to E. coli D-xylose isomerase (AAC76589.1); Blastp hit to AAC76589.1 (440 aa), 92% identity in aa 1 - 440" /codon_start=1 /transl_table=11 /product="D-xylose isomerase" /protein_id="NP_462561.1" /db_xref="GeneID:1255185" /translation="MQAYFDQLDRVRYEGPQSTNPLAFRHYNPDELVLGKRMEDHLRF AACYWHTFCWNGADMFGVGAFNRPWQQPGEALELAKRKADVAFEFFHKLNVPFYCFHD VDVSPEGASLKEYKNNFAQMVDVLAAKQEQSGVKLLWGTANCFTNPRYGAGAATNPDP EVFSWAATQVVTAMNATHKLGGENYVLWGGREGYETLLNTDLRQEREQIGRFMQMVVE HKHKMGFQGTLLIEPKPQEPTKHQYDYDVATVYGFLKQFGLEKEIKVNIEANHATLAG HSFHHEIATAIALGIFGSVDANRGDAQLGWDTDQFPISVEENALVMYEILKAGGFTTG GLNFDAKVRRQSTDKYDLFYGHIGAMDTMALSLKIAARMVEDGELDKRVAKRYAGWNG ELGQQILKGQLSLGELAQYAEQHNLAPVHQSGHQELLENLVNRYLFDK" misc_feature complement(3846485..3847795) /gene="xylA" /locus_tag="STM3661" /note="xylose isomerase; Provisional; Region: PRK05474" /db_xref="CDD:235487" regulatory complement(3847808..3847813) /regulatory_class="ribosome_binding_site" /gene="xylA" /locus_tag="STM3661" /note="putative RBS for xylA; RegulonDB:STMS1H003643" protein_bind complement(3847870..3847886) /note="putative binding site for XylR, RegulonDB: STMS1H000397" /bound_moiety="XylR" protein_bind complement(3848094..3848112) /note="putative binding site for XylR, RegulonDB: STMS1H000396" /bound_moiety="XylR" gene 3848150..3849342 /gene="xylR" /locus_tag="STM3662" /db_xref="GeneID:1255186" regulatory 3848150..3848155 /regulatory_class="ribosome_binding_site" /gene="xylR" /locus_tag="STM3662" /note="putative RBS for xylR; RegulonDB:STMS1H003644" CDS 3848164..3849342 /gene="xylR" /locus_tag="STM3662" /note="AraC/XylS family; similar to E. coli putative regulator of xyl operon (AAC76593.1); Blastp hit to AAC76593.1 (392 aa), 92% identity in aa 1 - 392" /codon_start=1 /transl_table=11 /product="xylose operon regulatory protein" /protein_id="NP_462562.1" /db_xref="GeneID:1255186" /translation="MFDKRHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEED FRARIDNIKEWLGDGVIADYDDDDIAQLLADVDVPIVGVGGSYHLAENYPAVHYIATD NHALVESAFLHLKEKGVNRFAFYGLPNSSRKHWAAEREYAFRQLVAEEKYRGVVYQGL ETAPENWQHAQNRLADWLQTLPPQTGIIAVTDARARHVLQACEHLHIPVPEKLCVIGI DNEELTRYLSRVALSSVAQGARQMGYQAAKLLHRLLAREEMPLQRILVPPVRVIARRS TDYRSLTDPAVIQAMHFIRNHACKGIKVEQVLDAVGISRSNLEKRFKEEVGETIHALI HAEKLEKARSLLISTTLAINEISQMCGYPSLQYFYSVFKKEYVTTPKEYRDQHSEALL " misc_feature 3848182..3848994 /gene="xylR" /locus_tag="STM3662" /note="ligand-binding domain of DNA transcription repressor specific for xylose (XylR); Region: PBP1_XylR; cd01543" /db_xref="CDD:380485" misc_feature order(3848182..3848184,3848218..3848226,3848233..3848238, 3848242..3848247,3848272..3848286,3848290..3848292, 3848305..3848307,3848314..3848316,3848323..3848331, 3848665..3848667,3848749..3848751,3848761..3848763, 3848770..3848775) /gene="xylR" /locus_tag="STM3662" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:380485" misc_feature order(3848215..3848217,3848356..3848358,3848566..3848568, 3848578..3848580,3848818..3848820,3848872..3848874) /gene="xylR" /locus_tag="STM3662" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380485" misc_feature 3849064..3849315 /gene="xylR" /locus_tag="STM3662" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:197666" gene complement(3849403..3850238) /gene="bax" /locus_tag="STM3663" /db_xref="GeneID:1255187" CDS complement(3849403..3850227) /gene="bax" /locus_tag="STM3663" /note="similar to E. coli putative ATP-binding protein (AAC76594.1); Blastp hit to AAC76594.1 (274 aa), 89% identity in aa 1 - 274" /codon_start=1 /transl_table=11 /product="gene transcribed divergently from malS" /protein_id="NP_462563.1" /db_xref="GeneID:1255187" /translation="MILTPMRRYGAMILMLLTIAFSGEVLAKTHATQTSQKSHITETS YKQVSSKQEYSRNSAKSSSLPDLRKYPSGTPRKKAFLRTVMPYITSQNAAITADRNWL ISKQYQNRWSPSERARMKDIAKRYKVSWSGNTRRIPWNTLLERVDIIPTSMVATMAAA ESGWGTSKLARSNNNLFGMKCTKGRCTNTPGKVKGYSQFASVEESVSAYVANLNTHPA YSSFRKSRAQLRKADQEVTATAMIHKLKGYSTQGSRYNNYLFAMYQDNQRLIAAHM" misc_feature complement(3849406..3850227) /gene="bax" /locus_tag="STM3663" /note="protein bax; Region: PRK10356" /db_xref="CDD:182404" regulatory complement(3850233..3850238) /regulatory_class="ribosome_binding_site" /gene="bax" /locus_tag="STM3663" /note="putative RBS for bax; RegulonDB:STMS1H003645" protein_bind 3850260..3850280 /note="putative binding site for CRP, RegulonDB: STMS1H000046" /bound_moiety="CRP" protein_bind 3850478..3850487 /note="putative binding site for MalT, RegulonDB: STMS1H000277" /bound_moiety="MalT" gene 3850510..3852570 /gene="malS" /locus_tag="STM3664" /db_xref="GeneID:1255188" regulatory 3850510..3850518 /regulatory_class="minus_35_signal" /gene="malS" /locus_tag="STM3664" /note="putative -35_signal for malS; RegulonDB:STMLTH004608" regulatory 3850531..3850536 /regulatory_class="ribosome_binding_site" /gene="malS" /locus_tag="STM3664" /note="putative RBS for malS; RegulonDB:STMS1H003646" regulatory 3850534..3850542 /regulatory_class="minus_10_signal" /gene="malS" /locus_tag="STM3664" /note="putative -10_signal for malS; RegulonDB:STMLTH004608" CDS 3850543..3852570 /gene="malS" /locus_tag="STM3664" /EC_number="3.2.1.1" /note="similar to E. coli alpha-amylase (AAC76595.1); Blastp hit to AAC76595.1 (676 aa), 81% identity in aa 1 - 676" /codon_start=1 /transl_table=11 /product="alpha-amylase" /protein_id="NP_462564.1" /db_xref="GeneID:1255188" /translation="MKLAAFALTLIPGIAIASSWTSPGFPTFSTQETGRFTSHAALTK GTRALTLHIDQQCWQPSGAIKLNQMLSLKPCEGAPPQWRLFKDGDYTITVDTRSGTPT LLLSIKTEPERTAQLAYQCPVWDGSPLTLDVRQTFPEGTVVRDYYSGQTDTVQNGQIT LQPADSHGLLLLERAETHAPAPFNWRNATVYFVLTDRFRNGDPTNDHSYSRHKDGMQE IGTFHGGDLRGLTSQLDYLQQLGVNALWISSPFEQIHGWVGGGTKGDFPHYAYHGYYT QDWTTLDANMGSEADLRALVDGAHQRGIRILFDVVMNHAGYATLADMQEYQFGALYLS GAERQKILGDRWTNWRPAAGQSWHSFNDYINFSDSAAWEKWWGKKWIRTDIGDYDSPG FDDLTLSLAFLPDIKTESTTPSGLPAFYANKPDTKAKFIEGYTPRDYLTHWLSQWVHD YGIDGFRVDTAKNVELPAWQQLKTQASAALREWKQANPDKALDNSPFWMTGEAWGHGV MKSDYYRYGFDAMINFDYQEQAAKAVDCLAEMGPVWQQMTDKMQDFNVLSYLSSHDTR LFREGGDKAAELLLLSPGAVQIFYGDESARPFGPTGSDPLQGTRSDMNWQDVSGKSAA AVAHWQRISQFRARHPAIGAGQQTTLTLKHGYGFVRQYGDDTVMVVWAGRR" misc_feature 3850543..3852567 /gene="malS" /locus_tag="STM3664" /note="alpha-amylase; Reviewed; Region: malS; PRK09505" /db_xref="CDD:236543" gene 3852744..3853994 /gene="avtA" /locus_tag="STM3665" /db_xref="GeneID:1255189" CDS 3852744..3853994 /gene="avtA" /locus_tag="STM3665" /EC_number="2.6.1.66" /note="similar to E. coli alanine-alpha-ketoisovalerate (or valine-pyruvate) transaminase, transaminase C (AAC76596.1); Blastp hit to AAC76596.1 (417 aa), 92% identity in aa 1 - 415" /codon_start=1 /transl_table=11 /product="valine-pyruvate aminotransferase" /protein_id="NP_462565.1" /db_xref="GeneID:1255189" /translation="MTFSLFGDKFTRHSGITRLMEDLNDGLRTPGAIMLGGGNPAHIP AMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIAL TNGSQSAFFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELL PEGQFKYHVDFEHLHIGEETGMICVSRPTNPTGNVITDEELMKLDRLANQHNIPLVID NAYGVPFPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKTITAIANMNGI ISLAPGGMGPAMMCEMIKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHK PEGAIFLWLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYV PEPDKIEAGVKILAEEIERAWREG" misc_feature 3852744..3853991 /gene="avtA" /locus_tag="STM3665" /note="valine--pyruvate transaminase; Provisional; Region: avtA; PRK09440" /db_xref="CDD:236517" gene complement(3854031..3854517) /gene="ysaA" /locus_tag="STM3666" /db_xref="GeneID:1255190" CDS complement(3854031..3854504) /gene="ysaA" /locus_tag="STM3666" /note="similar to E. coli orf, hypothetical protein (AAC76597.1); Blastp hit to AAC76597.1 (157 aa), 72% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_462566.1" /db_xref="GeneID:1255190" /translation="MNRFIMADASACIGCRTCEVACVVSHQEQQNSAAVTTADFVPRI RVIKEDSFTTATVCHQCEDAPCANVCPVQAIRRDRGHIFVTSSRCIGCKSCMLACPFG AMTVVASASGAQAIKCDLCWHREAGPACVEACPTSALQCVDAAHVQRQRLYSQPF" misc_feature complement(3854076..3854504) /gene="ysaA" /locus_tag="STM3666" /note="electron transport protein HydN; Region: PRK10330" /db_xref="CDD:182382" regulatory complement(3854512..3854517) /regulatory_class="ribosome_binding_site" /gene="ysaA" /locus_tag="STM3666" /note="putative RBS for ysaA; RegulonDB:STMS1H003647" gene complement(3854621..3855438) /gene="yiaJ" /locus_tag="STM3667" /db_xref="GeneID:1255191" CDS complement(3854621..3855421) /gene="yiaJ" /locus_tag="STM3667" /note="similar to E. coli putative regulator (AAC76598.1); Blastp hit to AAC76598.1 (282 aa), 91% identity in aa 16 - 276" /codon_start=1 /transl_table=11 /product="IclR family transcriptional repressor" /protein_id="NP_462567.1" /db_xref="GeneID:1255191" /translation="MSQNNDKEKPAGSQSLFRGLMLIEILSNYPNGCPLAHLSELAGL NKSTVHRLLQGLQSCGYVTPAPAAGSYRLTTKFIAVGQKALSSLNIIHVAAPHLEALN LTTGETVNFSSREDDHAILIYKLEPTTGMLRTRAYIGQHMPLYCSAMGKIYMAFGQPD YVASYWESHKDQIQPLTRNTITDLPAMYDELAQIRETSMAMDREENELGVSCIAVPVF DIHHRVPYAISISLSTSRLKQIGEKNLLKPLRETAQAISNELGFTVRE" misc_feature complement(3854633..3855397) /gene="yiaJ" /locus_tag="STM3667" /note="DNA-binding transcriptional regulator, IclR family [Transcription]; Region: IclR; COG1414" /db_xref="CDD:441024" regulatory complement(3855433..3855438) /regulatory_class="ribosome_binding_site" /gene="yiaJ" /locus_tag="STM3667" /note="putative RBS for yiaJ; RegulonDB:STMS1H003648" gene 3855638..3856649 /gene="yiaK" /locus_tag="STM3668" /db_xref="GeneID:1255192" regulatory 3855638..3855643 /regulatory_class="ribosome_binding_site" /gene="yiaK" /locus_tag="STM3668" /note="putative RBS for yiaK; RegulonDB:STMS1H003649" CDS 3855651..3856649 /gene="yiaK" /locus_tag="STM3668" /EC_number="1.1.1.37" /note="similar to E. coli putative dehydrogenase (AAC76599.1); Blastp hit to AAC76599.1 (332 aa), 89% identity in aa 1 - 332" /codon_start=1 /transl_table=11 /product="putative malate dehydrogenase" /protein_id="NP_462568.1" /db_xref="GeneID:1255192" /translation="MKVTFEELKGAFYRVLRSRNIAEDTADECAEMFARTTESGVYSH GVNRFPRFIQQLDNGDIIPDAKPQRVTSLGAIEQWDAQRAIGNLTAKKMMDRAIELAS DHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLI VAIPSTPITMVDMSMSMFSYGMLEVNRLAGRELPVDGGFDDNGQLTKEPGVIEKNRRI LPMGYWKGSGLSIVLDMIATLLSNGSSVAEVTQENSDEYGVSQIFIAIEVDKLIDGAT RDAKLQRIMDFITTAERADDNVAIRLPGHEFTKLLDDNRRHGITIDDSVWAKIQAL" misc_feature 3855651..3856646 /gene="yiaK" /locus_tag="STM3668" /note="2,3-diketo-L-gulonate reductase; Provisional; Region: PRK13260" /db_xref="CDD:183926" gene 3856648..3857125 /gene="yiaL" /locus_tag="STM3669" /db_xref="GeneID:1255193" regulatory 3856648..3856653 /regulatory_class="ribosome_binding_site" /gene="yiaL" /locus_tag="STM3669" /note="putative RBS for yiaL; RegulonDB:STMS1H003650" CDS 3856661..3857125 /gene="yiaL" /locus_tag="STM3669" /note="similar to E. coli putative lipase (AAC76600.1); Blastp hit to AAC76600.1 (155 aa), 82% identity in aa 1 - 154" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462569.1" /db_xref="GeneID:1255193" /translation="MIFGHIAQPDPCRLPSAIEQALDFLRNTDFRTLEPGVVEIDGKN IFAQIIDMTTRDAAENRPEVHRRYLDIQFLAWGEEKIGVAIDTGNNQISESLLEQRDI IFYHDSEHESFIEMIPGSYALFFPQDVHRPGCNKSIATPIRKIVVKVAIDVL" misc_feature 3856661..3857062 /gene="yiaL" /locus_tag="STM3669" /note="beta-galactosidase subunit beta; Region: ebgC; cl01047" /db_xref="CDD:470044" gene 3857142..3858081 /locus_tag="STM3670" /db_xref="GeneID:1255194" regulatory 3857142..3857147 /regulatory_class="ribosome_binding_site" /locus_tag="STM3670" /note="putative RBS for STM3670; RegulonDB:STMS1H003651" CDS 3857149..3858081 /locus_tag="STM3670" /codon_start=1 /transl_table=11 /product="putative chemotaxis protein, resembles cheA" /protein_id="NP_462570.1" /db_xref="GeneID:1255194" /translation="MKNNTGYIIGAYPCAPSFHQKSEEEETEFWRQLSDTPDIRGLEQ PCLEHLHPLGDEWLLRHTPGNWQIVVTAIMETMRRRSENGGFGLASSDEEQRKACVEY YRHLYQKINKINGNNTGKVIALELHAAPLAGNPNVAQATDAFARSLKEIANWDWSCDL VLEHCDAMTGPAPRKGFLPLVNVLETIADYDISVCINWARSAIEGRDTSLPLIHTQQA KQAGKLGALMFSGTTLDGEYGEWQDLHAPFAPFCPQSLMTEKHVKELITAAAPELLQF TGIKLLEINASADINHRINILRDGINMMKKATRR" misc_feature 3857170..3858036 /locus_tag="STM3670" /note="Domain of unknown function (DUF4862); Region: DUF4862; pfam16154" /db_xref="CDD:435174" gene 3858209..3858693 /gene="yiaM" /locus_tag="STM3671" /db_xref="GeneID:1255195" regulatory 3858209..3858214 /regulatory_class="ribosome_binding_site" /gene="yiaM" /locus_tag="STM3671" /note="putative RBS for yiaM; RegulonDB:STMS1H003652" CDS 3858220..3858693 /gene="yiaM" /locus_tag="STM3671" /note="similar to E. coli orf, hypothetical protein (AAC76601.1); Blastp hit to AAC76601.1 (157 aa), 76% identity in aa 1 - 157" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_462571.1" /db_xref="GeneID:1255195" /translation="MKRVLEGILAVLIAVLSCIVFINVILRYGFESSILSVDELSRYL FVWLTFIGAIVAFMDNAHVQVTFVVEKLSPANQRRLSLLTHSLILLLCIALGWGSLQK ALQDWSDHSPILGLPIGLMYIACLPTSVAIALIELRRLYHLITRNDSFQQPQQGA" misc_feature 3858220..3858690 /gene="yiaM" /locus_tag="STM3671" /note="2,3-diketo-L-gulonate TRAP transporter small permease protein YiaM; Provisional; Region: PRK09877" /db_xref="CDD:182129" gene 3858683..3859973 /gene="yiaN" /locus_tag="STM3672" /db_xref="GeneID:1255196" regulatory 3858683..3858688 /regulatory_class="ribosome_binding_site" /gene="yiaM" /locus_tag="STM3671" /note="putative RBS for yiaN; RegulonDB:STMS1H003653" CDS 3858696..3859973 /gene="yiaN" /locus_tag="STM3672" /note="similar to E. coli putative membrane protein (AAC76602.1); Blastp hit to AAC76602.1 (424 aa), 90% identity in aa 1 - 398" /codon_start=1 /transl_table=11 /product="putative DedA family, membrane protein" /protein_id="NP_462572.1" /db_xref="GeneID:1255196" /translation="MAVVIFLCCLLGGIAIGLPIAWSLLLCGAALMAYLDMFDVQIMA QTLVNGADSFSLLAIPFFVLAGEIMNAGGLSKRIVDLPMKLVGHKPGGLGYVGVIAAM IMASLSGSAVADTAAVAALLVPMMRSANYPINRSVGLIASGGIIAPIIPPSIPFIIFG VSSGLSISKLFMAGIAPGIMMGAALMLTWWWQAGRLNLPSQPKATPREIWQSLVSGIW ALFLPVIIIGGFRSGLFTPTEAGAVAAFYALFVAVVIYRELTFSSLYHVLVNAAKTTS VVMFLVAAAQVSAWLITIAELPMMVSDLLQPLVDSPRLLFIVIMISIMVVGMVMDLTP TVLILTPVLLPLVKEANIDPIYFGVMFIINCSIGLITPPVGNVLNVISGVAKLKFDDA VRGVFPYVVVLMSLLVLFIFIPELIITPLKWIN" misc_feature 3858696..3859970 /gene="yiaN" /locus_tag="STM3672" /note="2,3-diketo-L-gulonate transporter large permease YiaN; Region: PRK15060" /db_xref="CDD:185020" gene 3859973..3860971 /gene="yiaO" /locus_tag="STM3673" /db_xref="GeneID:1255197" regulatory 3859973..3859978 /regulatory_class="ribosome_binding_site" /gene="yiaO" /locus_tag="STM3673" /note="putative RBS for yiaO; RegulonDB:STMS1H003654" CDS 3859985..3860971 /gene="yiaO" /locus_tag="STM3673" /note="similar to E. coli putative solute-binding transport protein (AAC76603.1); Blastp hit to AAC76603.1 (328 aa), 87% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="putative dicarboxylate-binding periplasmic protein" /protein_id="NP_462573.1" /db_xref="GeneID:1255197" /translation="MKLHVIARSLLIAGLTVFSVSSLAAQSLRFGYETPQTDSQHIAA KKFNELLKEKTNGELTLKLFPDSTLGNAQAMISGVRGGTIDMEMSGSNNFTGLAPVFN LLDVPFLFRDTAHAHKTLDGKVGDELKKSLDSKGLKVLAYWENGWRDVTNSRAPVKTP GDLKGLKIRTNNSPMNIAAFKIFGANPIPMPFSEVYTGLETRTIDAQEHPINVVWSAK FYEVQKYLSLTHHAYSPLLLVINKAKFDALSPQFQEALLSSAKEAGDYQRKLVAEDQQ KIIDGMKEAEVEVLTDIDRKAFSDALGSQVRDMFLKDNPQGADLLKAVDEVQ" misc_feature 3860063..3860956 /gene="yiaO" /locus_tag="STM3673" /note="Substrate-binding domain of 2,3-diketo-L-gulonate-binding Tripartite ATP-independent Periplasmic transport system and related proteins; the type 2 periplasmic-binding protein fold; Region: PBP2_TRAP_YiaO_like; cd13679" /db_xref="CDD:270397" misc_feature order(3860489..3860491,3860495..3860497,3860558..3860560, 3860609..3860614,3860621..3860623,3860684..3860686) /gene="yiaO" /locus_tag="STM3673" /note="putative chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270397" gene 3860960..3862471 /gene="lyxK" /locus_tag="STM3674" /db_xref="GeneID:1255198" regulatory 3860960..3860965 /regulatory_class="ribosome_binding_site" /gene="yiaO" /locus_tag="STM3673" /note="putative RBS for lyxK; RegulonDB:STMS1H003655" CDS 3860975..3862471 /gene="lyxK" /locus_tag="STM3674" /EC_number="2.7.1.53" /note="similar to E. coli L-xylulose kinase, cryptic (AAC76604.1); Blastp hit to AAC76604.1 (498 aa), 85% identity in aa 1 - 498" /codon_start=1 /transl_table=11 /product="cryptic L-xylulose kinase" /protein_id="NP_462574.1" /db_xref="GeneID:1255198" /translation="MSNYWLGLDCGGSWLKAGLYDGAGREVAVQRLPLHALSPQPGWV ERDMTELWQQCASVISKLLAHTGVSGSQIRGLGISAQGKGLFLLDKSDRPLGKAILSS DRRAMEIVQRWQKEAVPQKLYPLTRQTLWTGHPVSLLRWVKENEPQRYAQIGCVMMTH DYLRWCLTGVKGCEESNISESNLYNMATGQYDPRLTEWLGISEIDSALSPVVGSAEIC GEITAQAAAITGLAAGTPVVGGLFDVVSTALCAGIEDESTLNAVMGTWAVTSGIAHGL RDHEAHPYVYGRYVNDGQYIVHEASPTSSGNLEWFTAQWGDLSFDEINQAVASLPKAG SDLFFLPFLYGSNAGLEMTCGFYGMQALHNRAHLLQALYEGVVFSHMTHLNRMRERFT EVCALRVTGGPAHSDVWMQMLADVSGLRIELPQVEETGCFGAALAARVGTGVYRDFRE AQRDLQHPVRTLLPDMTAHALYQRKYRQYQDLIEALQGYHARIKEHAL" misc_feature 3860984..3862303 /gene="lyxK" /locus_tag="STM3674" /note="nucleotide-binding domain (NBD) of Escherichia coli L-xylulose/3-keto-L-gulonate kinase (EcLyxK) and similar proteins; Region: ASKHA_NBD_FGGY_EcLyxK-like; cd07802" /db_xref="CDD:466805" gene 3862454..3863130 /gene="sgbH" /locus_tag="STM3675" /db_xref="GeneID:1255199" regulatory 3862454..3862459 /regulatory_class="ribosome_binding_site" /gene="sgbH" /locus_tag="STM3675" /note="putative RBS for sgbH; RegulonDB:STMS1H003656" CDS 3862468..3863130 /gene="sgbH" /locus_tag="STM3675" /EC_number="4.1.2.-" /note="similar to E. coli probable 3-hexulose 6-phosphate synthase (AAC76605.1); Blastp hit to AAC76605.1 (220 aa), 90% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="putative 3-hexulose-6-phosphate isomerase" /protein_id="NP_462575.1" /db_xref="GeneID:1255199" /translation="MSRPLLQLALDHTSLEAAQRDVALLQDHVDIVEAGTILCLTEGL SAVKALRAQCPEKIIVADWKVADAGETLAQQAFGAGANWMTIICAAPLATVEKGHAVA QSCGGEIQMELFGNWTLDDARDWYRTGVRQAIYHRGRDAQASGQQWGEADLARMKALS DIGLELSITGGITPADLPLFRDINVKAFIAGRALAGAAHPAQVAAEFHAQIDAIWGEK HA" misc_feature 3862468..3863121 /gene="sgbH" /locus_tag="STM3675" /note="3-keto-L-gulonate-6-phosphate decarboxylase UlaD; Region: sgbH; PRK13305" /db_xref="CDD:183962" misc_feature order(3862492..3862494,3862498..3862500,3862564..3862566, 3862651..3862653,3862657..3862659,3862873..3862875, 3862972..3862974,3862978..3862980,3863038..3863043) /gene="sgbH" /locus_tag="STM3675" /note="active site" /db_xref="CDD:240077" misc_feature order(3862504..3862506,3862585..3862587,3862594..3862599, 3862666..3862674,3862690..3862692,3862732..3862734, 3862747..3862749,3862810..3862812,3862828..3862830, 3862873..3862875,3862879..3862887) /gene="sgbH" /locus_tag="STM3675" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:240077" misc_feature order(3862564..3862566,3862651..3862653) /gene="sgbH" /locus_tag="STM3675" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:240077" gene 3863114..3863983 /gene="sgbU" /locus_tag="STM3676" /db_xref="GeneID:1255200" regulatory 3863114..3863119 /regulatory_class="ribosome_binding_site" /gene="sgbH" /locus_tag="STM3675" /note="putative RBS for sgbU; RegulonDB:STMS1H003657" CDS 3863123..3863983 /gene="sgbU" /locus_tag="STM3676" /EC_number="5.-.-.-" /note="similar to E. coli probable 3-hexulose-6-phosphate isomerase (AAC76606.1); Blastp hit to AAC76606.1 (297 aa), 91% identity in aa 12 - 297" /codon_start=1 /transl_table=11 /product="putative 3-hexulose-6-phosphate isomerase" /protein_id="NP_462576.1" /db_xref="GeneID:1255200" /translation="MRNHPLGIYEKALAKDLSWPERLVLAKSCGFDFVEMSVDETDER LSRLEWTPAQRASLVNAMLESGVAIPSMCLSAHRRFPFGSRDEAVRQRAREIMTKAIR LARDLGIRTIQLAGYDVYYEEHDEGTQQRFAEGLAWAVEQAAAAQVMLAVEIMDTAFM NSISKWKKWDEMLSSPWFTVYPDVGNLSAWGNDVTAELKLGIDRIAAIHLKDTLPVTG DSPGQFRDVPFGEGCVDFVGIFKTLHELNYRGSFLIEMWTEKASEPVLEIIQARRWIE SRMQEGGFTC" misc_feature 3863126..3863977 /gene="sgbU" /locus_tag="STM3676" /note="L-ribulose-5-phosphate 3-epimerase; Region: PRK13210" /db_xref="CDD:237308" gene 3863960..3864672 /gene="sgbE" /locus_tag="STM3677" /db_xref="GeneID:1255201" regulatory 3863960..3863965 /regulatory_class="ribosome_binding_site" /gene="sgbE" /locus_tag="STM3677" /note="putative RBS for sgbE; RegulonDB:STMS1H003658" CDS 3863977..3864672 /gene="sgbE" /locus_tag="STM3677" /EC_number="5.1.3.4" /note="similar to E. coli putative epimerase/aldolase (AAC76607.1); Blastp hit to AAC76607.1 (231 aa), 93% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="L-ribulose-5-phosphate 4-epimerase" /protein_id="NP_462577.1" /db_xref="GeneID:1255201" /translation="MLEQLKAEVLAANLALPAHGLVTFTWGNVSAVDETRKLMVIKPS GVEYEVMTADDMVVVEIASGKVVEGHKKPSSDTATHLALYRRYPQIGGIVHTHSRHAT IWSQAGLDLPAWGTTHADYFYGAIPCTRLMTVEEINGEYEYQTGEVIIKTFEERGLDP AQIPAVLVHSHGPFAWGKNAADAVHNAVVLEECAYMGLFSRQLAPQLPDMQPELLDKH YLRKHGANAYYGQ" misc_feature 3863977..3864669 /gene="sgbE" /locus_tag="STM3677" /note="L-ribulose-5-phosphate 4-epimerase; Reviewed; Region: sgbE; PRK12347" /db_xref="CDD:183459" misc_feature order(3864007..3864009,3864019..3864021,3864043..3864045, 3864115..3864117,3864121..3864126,3864265..3864267, 3864271..3864276,3864289..3864297,3864316..3864318, 3864322..3864327,3864367..3864369,3864484..3864486, 3864517..3864519,3864538..3864540,3864550..3864552, 3864571..3864573,3864631..3864633) /gene="sgbE" /locus_tag="STM3677" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238232" misc_feature order(3864058..3864060,3864106..3864111,3864196..3864204, 3864259..3864261,3864265..3864267,3864487..3864489) /gene="sgbE" /locus_tag="STM3677" /note="active site" /db_xref="CDD:238232" misc_feature order(3864259..3864261,3864265..3864267,3864487..3864489) /gene="sgbE" /locus_tag="STM3677" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238232" gene complement(3864833..3865652) /locus_tag="STM3678" /db_xref="GeneID:1255202" CDS complement(3864833..3865648) /locus_tag="STM3678" /note="araC family; similar to E. coli putative ARAC-type regulatory protein (AAC76936.1); Blastp hit to AAC76936.1 (283 aa), 25% identity in aa 112 - 274" /codon_start=1 /transl_table=11 /product="putative bacterial regulatory helix-turn-helix protein" /protein_id="NP_462578.1" /db_xref="GeneID:1255202" /translation="MLELSITLPIKVQNGGLFISRGIGRHPARRLQSWEIIFVEKGCL KIQEEECVFCVEAGESLLLWPHRRHIGVEEFPADLKFYWLHFEVKAPDSDPRWLTHLS VPQHTQVADPQALIALFRQFMNEQEKHQRSPALEFIVLLILQQLTVDARQNENAEAAG VSLAWKAQQLIRTHYHLPLSSAVLAKELHCNVDYLGRVYRRVFHLTLTEAIHRQRVRE AEKLLISDARSLKEVAERCGFNDVGYFRQIFRKHTGLTPTAWKRRYSKEHVNS" misc_feature complement(3864848..3865582) /locus_tag="STM3678" /note="AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:441809" misc_feature complement(3864845..>3865153) /locus_tag="STM3678" /note="Transcriptional regulator GlxA, contains an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]; Region: GlxA; COG4977" /db_xref="CDD:444002" regulatory complement(3865647..3865652) /regulatory_class="ribosome_binding_site" /locus_tag="STM3678" /note="putative RBS for STM3678; RegulonDB:STMS1H003659" gene 3865905..3867867 /locus_tag="STM3679" /db_xref="GeneID:1255203" regulatory 3865905..3865910 /regulatory_class="ribosome_binding_site" /locus_tag="STM3679" /note="putative RBS for STM3679; RegulonDB:STMS1H003660" CDS 3865912..3867867 /locus_tag="STM3679" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462579.1" /db_xref="GeneID:1255203" /translation="MNVLEVDLHKLTVSDPFLGQYQQLVRDVVIPYQWDALNDRIPEA EPSHAIENFRIAAGQQTGDFYGMVFQDSDVAKWLEAVAWSLCQKPDPALEKTADEVIE LVAAAQCDDGYLNTYFTAKAPQERWSNLAECHELYCAGHLIEAGVAFFQATGKRRLLD VVCRLADHIDSTFGPGENQLHGYPGHPEIELALMRLYEVTEQPRYMTLASYFIGQRGA QPHFYDEEYEKRGQTSYWHTYGPAWMVKDKAYSQAHLPISQQQTAIGHAVRFVYLMTG VAHLARLSNDEGKRQDCLRLWKNMAQRQLYITGGIGSQSSGEAFSSDYDLPNDSVYAE SCASIGLMMFARRMLEMEADSQYADVMERALYNTVLGGMALDGKHFFYVNPLEVHPKS LKFNHIYDHVKPIRRRWFGCACCPPNIARVLTSLGHYIYTPRADALYINMYVGNSMEI PVENGALKLRISGNYPWHEQVKIAIDSVQPVRHTLALRLPDWCPEAKVTLNGLDVEQD IRKGYLHIRRTWQEGDTITLTLPMPVRRVYGNPLARHVAGKVAIQRGPLVYCLEQADN GEELHNLWLPKESEFRVFEGKGLFAHKMLIQAEGEKQSAPDAQHQALWHYDNAPSSRQ PQTLTFIPWFSWANRGEGEMRIWVNER" misc_feature 3865927..3867858 /locus_tag="STM3679" /note="Beta-L-arabinofuranosidase, GH127 family [Carbohydrate transport and metabolism]; Region: HybA1; COG3533" /db_xref="CDD:442754" gene complement(3867985..3869535) /gene="aldB" /locus_tag="STM3680" /db_xref="GeneID:1255204" CDS complement(3867985..3869523) /gene="aldB" /locus_tag="STM3680" /EC_number="1.2.1.22" /note="lactaldehyde dehydrogenase; similar to E. coli aldehyde dehydrogenase B (lactaldehyde dehydrogenase) (AAC76612.1); Blastp hit to AAC76612.1 (542 aa), 96% identity in aa 31 - 542" /codon_start=1 /transl_table=11 /product="aldehyde dehydrogenase B" /protein_id="NP_462580.1" /db_xref="GeneID:1255204" /translation="MTNNPPSTRIQPGEYGYPLKLKARYDNFIGGDWVAPADGEYYQN LTPVTGQPLCEVASSGKKDIDLALDAAHKAKDKWAHTSVQDRAAILFKIADRMEQNLE LLATAETWDNGKPIRETSAADVPLAIDHFRYFASCIRAQEGGISEVDSETVAYHFHEP LGVVGQIIPWNFPLLMASWKMAPALAAGNCVVLKPARLTPLSVLLLMEIIGDLLPPGV VNVVNGAGGEIGEYLATSKRIAKVAFTGSTEVGQQIMQYATQNIIPVTLELGGKSPNI FFADVMDEEDAFFDKALEGFALFAFNQGEVCTCPSRALVQESIYERFMERAIRRVESI RSGNPLDSGTQMGAQVSHGQLETILNYIDIGKKEGADILTGGRRKELDGELKEGYYLE PTILFGKNNMRVFQEEIFGPVLAVTTFKTMEEALEIANDTQYGLGAGVWSRNGNLAYK MGRGIQAGRVWTNCYHAYPAHAAFGGYKQSGIGRETHKMMLEHYQQTKCLLVSYSDKP LGLF" misc_feature complement(3868012..3869451) /gene="aldB" /locus_tag="STM3680" /note="Ralstonia eutrophus NAD+-dependent acetaldehyde dehydrogenase II and Staphylococcus aureus AldA1 (SACOL0154)-like; Region: ALDH_ACDHII_AcoD-like; cd07559" /db_xref="CDD:143471" misc_feature complement(order(3868102..3868104,3868216..3868218, 3868294..3868296,3868300..3868302,3868603..3868605, 3868714..3868722,3868762..3868767,3868774..3868776, 3868783..3868794,3868933..3868938,3868942..3868944, 3868987..3868989,3869011..3869025)) /gene="aldB" /locus_tag="STM3680" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143471" misc_feature complement(order(3868603..3868605,3868612..3868614, 3868720..3868722,3869011..3869013)) /gene="aldB" /locus_tag="STM3680" /note="catalytic residues [active]" /db_xref="CDD:143471" regulatory complement(3869530..3869535) /regulatory_class="ribosome_binding_site" /gene="aldB" /locus_tag="STM3680" /note="putative RBS for aldB; RegulonDB:STMS1H003661" protein_bind complement(3869564..3869582) /note="putative binding site for FIS, RegulonDB: STMS1H000146" /bound_moiety="FIS" protein_bind complement(3869568..3869584) /note="putative binding site for FIS, RegulonDB: STMS1H000142" /bound_moiety="FIS" protein_bind complement(3869596..3869616) /note="putative binding site for CRP, RegulonDB: STMS1H000054" /bound_moiety="CRP" protein_bind complement(3869664..3869682) /note="putative binding site for FIS, RegulonDB: STMS1H000147" /bound_moiety="FIS" gene 3869686..3870573 /locus_tag="STM3681" /db_xref="GeneID:1255205" regulatory 3869686..3869691 /regulatory_class="ribosome_binding_site" /locus_tag="STM3681" /note="putative RBS for STM3681; RegulonDB:STMS1H003662" CDS 3869692..3870573 /locus_tag="STM3681" /note="similar to E. coli possible NAGC-like transcriptional regulator (AAC73497.1); Blastp hit to AAC73497.1 (348 aa), 24% identity in aa 49 - 348" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_462581.1" /db_xref="GeneID:1255205" /translation="MQQYIGIDVGGTHVKYGVINSDGEELTHHQFDTPEDASTFTRKW QDVVARCQQDYDIAAIGVSFPGHINPHNGHAAKAGALAYLDDVNLMELFSGLTDLPLV VENDANCAALGEMWRGAGQHYENMVCITIGTGIGGGIIVGRELYRGAHFHAGEFGVMP VGNNGESMHKIASTSGLMASCRQALALPAEEMPPADVIFERMATDVHLREAVNDWARY LSRGVYSVISMFDPGVVLIGGGISEQEKLYPLLTRHLETFEMWEALQVPIQPCQLGNQ AGRLGAVWLAQQKLDRG" misc_feature 3869692..3870555 /locus_tag="STM3681" /note="Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain [Carbohydrate transport and metabolism, Transcription]; Region: NagC; COG1940" /db_xref="CDD:441543" protein_bind complement(3869756..3869772) /note="putative binding site for FIS, RegulonDB: STMS1H000140" /bound_moiety="FIS" protein_bind complement(3869762..3869780) /note="putative binding site for FIS, RegulonDB: STMS1H000145" /bound_moiety="FIS" gene complement(3870858..3872725) /gene="selB" /locus_tag="STM3682" /db_xref="GeneID:1255206" CDS complement(3870858..3872708) /gene="selB" /locus_tag="STM3682" /note="similar to E. coli selenocysteinyl-tRNA-specific translation factor (AAC76614.1); Blastp hit to AAC76614.1 (614 aa), 85% identity in aa 1 - 614" /codon_start=1 /transl_table=11 /product="selenocysteinyl-tRNA-specific translation factor" /protein_id="NP_462582.1" /db_xref="GeneID:1255206" /translation="MIIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAY WPQPDGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLQILQLT GNLQLTVALTKADRVDEARIGEVREEVLAALDNYGFADTVLFVTAANEGRGIAELRAH LQQLPARSHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVNVGDTLWLTGVNTPMRV RSLHAQNQPTDHAYAGQRIALNIAGDAEKEQLNRGDWLLSDAPVGEAFSRVIVSLALH APLSQWQPLHIHHAASHVTGRVSLLEGGLAELIFDTPLWLADNDRLVLRDISARATLA GARVVTLKAPRRGKRKPDYLHWLSTLAAAQDDSAALAIHLERGAVNLPDFGWARQLNP LGMRQLIEQHGFIQAGDNLLSAPVAARWQRKILDTLATYHEQHRDEPGPGRERLRRMA LPMEDEALVLMLIERMRDDGLIHSHHGWLHLPDHKAGFSDEQQAVWQKVEPLFGDEPW WVRDLAKETGTEEQLMRLVLRQAAQQGIITAIVKDRYYRNDRIVAFANMIRELDQERG STCAADFRDRLNVGRKLAIQILEYFDRIGFTRRRGNDHLLRDALLFPQKE" misc_feature complement(3870864..3872708) /gene="selB" /locus_tag="STM3682" /note="selenocysteinyl-tRNA-specific translation factor; Provisional; Region: PRK10512" /db_xref="CDD:182508" gene complement(3872705..3874107) /gene="selA" /locus_tag="STM3683" /db_xref="GeneID:1255207" CDS complement(3872705..3874096) /gene="selA" /locus_tag="STM3683" /EC_number="2.9.1.1" /note="combine with SelD; similar to E. coli selenocysteine synthase: L-seryl-tRNA (Ser) selenium transferase (AAC76615.1); Blastp hit to AAC76615.1 (463 aa), 86% identity in aa 1 - 463" /codon_start=1 /transl_table=11 /product="selenocysteine synthase" /protein_id="NP_462583.1" /db_xref="GeneID:1255207" /translation="MTSETRTLYSQLPAIDRLLHDSAFLSLRDRYGHTQVVDLLRRML DDARDVIRNTQTLPDWYADWAQEAKLRLENAAQSALRPVINLTGTVLHTNLGRALQAQ EAIEAVTQAMRAPVTLEYDLDGAGRGHRDRALATLLCRITGAEDACIVNNNAAAVLLM LAATASGKEVVVSRGELVEIGGAFRIPDVMRQAGCTLHEVGTTNRTHAKDYRQAVNEN TGLLMKVHTSNYSIEGFTKTVEEAELAEIGRELDIPVVADLGSGSLVDLSQYGLPKEP MPQQLIAAGVSLVSFSGDKLLGGPQAGIIVGKKAMIAQLQSHPLKRALRADKMTLAAL EATLRLYLHPEALAEKLPTLRLLTRSEASIREQAQRLQARLAARYGDEFALEVKPCLS QIGSGSLPVDRLPSAAMTFTPHDGRGSRLEALAARWRMLPVPVIGRIYDGRLWLDMRC LEDESRFMEMMLK" misc_feature complement(3872714..3874072) /gene="selA" /locus_tag="STM3683" /note="L-seryl-tRNA(Sec) selenium transferase; Region: selA; TIGR00474" /db_xref="CDD:273099" regulatory complement(3872720..3872725) /regulatory_class="ribosome_binding_site" /gene="selA" /locus_tag="STM3683" /note="putative RBS for selB; RegulonDB:STMS1H003663" regulatory complement(3874102..3874107) /regulatory_class="ribosome_binding_site" /gene="selA" /locus_tag="STM3683" /note="putative RBS for selA; RegulonDB:STMS1H003664" gene complement(3874195..3874814) /gene="yibF" /locus_tag="STM3684" /db_xref="GeneID:1255208" CDS complement(3874195..3874803) /gene="yibF" /locus_tag="STM3684" /note="similar to E. coli putative S-transferase (AAC76616.1); Blastp hit to AAC76616.1 (202 aa), 86% identity in aa 1 - 202" /codon_start=1 /transl_table=11 /product="putative glutathione S-transferase" /protein_id="NP_462584.1" /db_xref="GeneID:1255208" /translation="MKLIGSYTSPFVRKISVLLLEKGITFEFINELPYEADNGVAQYN PLGKVPALVTEKGEYWFDSPIIAEYIELLDIAPAMLPRDPMAALKVRQLEALADGIMD AALVSVREQARPTAQQSETELLRQREKINRSLDMLESYLSDGTLKTDTVNLATIAIAC AVGYLNFRRVAPGWCVSRPHLVKLVETLFQRESFARTEAPKA" misc_feature complement(3874198..3874803) /gene="yibF" /locus_tag="STM3684" /note="putative glutathione S-transferase; Provisional; Region: PRK10357" /db_xref="CDD:182405" regulatory complement(3874809..3874814) /regulatory_class="ribosome_binding_site" /gene="yibF" /locus_tag="STM3684" /note="putative RBS for yibF; RegulonDB:STMS1H003665" protein_bind 3874892..3874912 /note="putative binding site for CRP, RegulonDB: STMS1H000121" /bound_moiety="CRP" protein_bind 3874898..3874918 /note="putative binding site for CRP, RegulonDB: STMS1H000055" /bound_moiety="CRP" protein_bind 3875001..3875019 /note="putative binding site for CRP, RegulonDB: STMS1H000122" /bound_moiety="CRP" protein_bind 3875075..3875104 /note="putative binding site for CRP, RegulonDB: STMS1H000062" /bound_moiety="CRP" protein_bind 3875118..3875138 /note="putative binding site for CRP, RegulonDB: STMS1H000114" /bound_moiety="CRP" gene 3875190..3877195 /gene="mtlA" /locus_tag="STM3685" /db_xref="GeneID:1255209" regulatory 3875190..3875198 /regulatory_class="minus_35_signal" /gene="mtlA" /locus_tag="STM3685" /note="putative -35_signal for mtlA; RegulonDB:STMLTH004609" regulatory 3875217..3875225 /regulatory_class="minus_10_signal" /gene="mtlA" /locus_tag="STM3685" /note="putative -10_signal for mtlA; RegulonDB:STMLTH004609" regulatory 3875266..3875271 /regulatory_class="ribosome_binding_site" /gene="mtlA" /locus_tag="STM3685" /note="putative RBS for mtlA; RegulonDB:STMS1H003666" CDS 3875279..3877195 /gene="mtlA" /locus_tag="STM3685" /note="similar to E. coli PTS system, mannitol-specific enzyme IIABC components (AAC76623.1); Blastp hit to AAC76623.1 (637 aa), 95% identity in aa 1 - 637" /codon_start=1 /transl_table=11 /product="PTS family, mannitol-specific enzyme IIABC components" /protein_id="NP_462585.1" /db_xref="GeneID:1255209" /translation="MSSDIKIKVQSFGRFLSNMVMPNIGAFIAWGIITALFIPTGWLP NETLAKLVGPMITYLLPLLIGYTGGRLVGGERGGVVGAITTMGVIVGADMPMFLGSMI AGPLGGYCIKKFDSWVDGKIKSGFEMLVNNFSAGIIGMILAILAFLGIGPAVEVLSKI LAAGVNFMVAHDMLPLASIFVEPAKILFLNNAINHGIFSPLGIQQSHEMGKSIFFLIE ANPGPGMGVLLAYMFFGRGSAKQSAGGAAIIHFLGGIHEIYFPYVLMNPRLILAVILG GMTGVFTLTILNGGLVSPASPGSILAVLAMTPKGAYFANIAAIVAAMAVSFVVSAILL KTSKVKEEDDIEAATRRMHDMKAESKGASPLAAGDVTNDLSHVRKIIVACDAGMGSSA MGAGVLRKKVQDAGLSQISVTNSAINNLPPDVDLVITHRDLTERAMRQVPQAQHISLT NFLDSGLYTSLTERLVAAQRHNTNEEKVRDHLKDSFEEGDNNLFKLGAENIFLGRKAA NKEEAIRFAGEQLVKGGYVEPEYVEAMLDREKLTPTYLGESIAVPHGTVEAKDRVLKT GVVFCQYPEGVRFGEEEDDIARLVIGIAARNNEHIQVITSLTNALDDESVIERLAHTT SVDEVLELLAGKKA" misc_feature 3875279..3877192 /gene="mtlA" /locus_tag="STM3685" /note="PTS system mannitol-specific transporter subunit IICBA; Provisional; Region: PRK15083" /db_xref="CDD:237905" gene 3877404..3878564 /gene="mtlD" /locus_tag="STM3686" /db_xref="GeneID:1255210" regulatory 3877404..3877409 /regulatory_class="ribosome_binding_site" /gene="mtlD" /locus_tag="STM3686" /note="putative RBS for mtlD; RegulonDB:STMS1H003667" CDS 3877416..3878564 /gene="mtlD" /locus_tag="STM3686" /EC_number="1.1.1.17" /note="similar to E. coli mannitol-1-phosphate dehydrogenase (AAC76624.1); Blastp hit to AAC76624.1 (382 aa), 93% identity in aa 1 - 380" /codon_start=1 /transl_table=11 /product="mannitol-1-phosphate dehydrogenase" /protein_id="NP_462586.1" /db_xref="GeneID:1255210" /translation="MKALHFGAGNIGRGFIGKLLADAGIQLTFADVNQVVLDALNARH SYQVHVVGENEQVDTVSGVNAVSSIGDDVVDLIAHVDLITTAVGPVVLERIAPAIAKG LVKRKAQGVDAPLNIIACENMVRGTTQLKGHVMNALADGDKAWVEQHVGFVDSAVDRI VPPSASATNDPLEVTVETFSEWIVDKTQFKGALPNIPGMELTDNLMAFVERKLFTLNT GHAITAYLGKLAGHQTIRDAILDESIRAVVKGAMEESGAVLIKRYGFDADKHAAYIQK ILGRFENPYLKDDVERVGRQPLRKLSAGDRLIKPLLGTLEYGLPHVNLVKGIAAAMHF RSDEDPQAQELAALITEKGPQAALAQISGLDANSDVVAEAVNAYNATK" misc_feature 3877416..3878561 /gene="mtlD" /locus_tag="STM3686" /note="mannitol-1-phosphate 5-dehydrogenase; Provisional; Region: PRK02318" /db_xref="CDD:235031" gene 3878561..3879151 /gene="mtlR" /locus_tag="STM3687" /db_xref="GeneID:1255211" CDS 3878561..3879151 /gene="mtlR" /locus_tag="STM3687" /note="similar to E. coli repressor for mtl (AAC76625.1); Blastp hit to AAC76625.1 (195 aa), 92% identity in aa 5 - 195" /codon_start=1 /transl_table=11 /product="repressor for mtl" /protein_id="NP_462587.1" /db_xref="GeneID:1255211" /translation="MTQNPAQVSLRPNNRLSDMQAIMEQTQAFENRVLERLNAGKTVR SFLITAVELLTEAVNILVLQVFRKDDYAVKYAVEPLLDGDGPLGDLSVRLKLIYGLGV LSRTEYEDAELLMALREELNHDGNEYAFTDDEILGPFGELHCVMALPPPPHFDTSDAA LYAMQIQRYQQAVRSTMVLSLTELISKISLKKAFQK" misc_feature 3878639..3879142 /gene="mtlR" /locus_tag="STM3687" /note="MltR family transcriptional regulator; Region: mtlR; PRK11001" /db_xref="CDD:236817" gene complement(3879161..3879377) /locus_tag="STM3688" /db_xref="GeneID:1255212" CDS complement(3879161..3879370) /locus_tag="STM3688" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462588.1" /db_xref="GeneID:1255212" /translation="MAKIGENVPLLIDKAVDFMASSQAFREYLNKTPPRDYVPSEVPS ESAPIYLQRLEYYRRLYRPKEEERG" regulatory complement(3879372..3879377) /regulatory_class="ribosome_binding_site" /locus_tag="STM3688" /note="putative RBS for STM3688; RegulonDB:STMS1H003668" gene 3879648..3880023 /gene="yibL" /locus_tag="STM3689" /db_xref="GeneID:1255213" regulatory 3879648..3879653 /regulatory_class="ribosome_binding_site" /gene="yibL" /locus_tag="STM3689" /note="putative RBS for yibL; RegulonDB:STMS1H003669" CDS 3879661..3880023 /gene="yibL" /locus_tag="STM3689" /note="similar to E. coli orf, hypothetical protein (AAC76626.1); Blastp hit to AAC76626.1 (120 aa), 90% identity in aa 1 - 120" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462589.1" /db_xref="GeneID:1255213" /translation="MKEVEKNEIKRLSDRLDAIRHQQAGLSLVESADKYAELEKEKET LEAEIIRLREVHSQKLSKEAQKLMNLPFRRAITKKEQADMGKLKKSVRGLIVVHPMTA LGREMGLKEMTGFAKSEF" misc_feature 3879667..3880020 /gene="yibL" /locus_tag="STM3689" /note="YibL family ribosome-associated protein; Region: PRK11020" /db_xref="CDD:182904" gene 3880507..3881196 /locus_tag="STM3690" /db_xref="GeneID:1255214" regulatory 3880507..3880512 /regulatory_class="ribosome_binding_site" /locus_tag="STM3690" /note="putative RBS for STM3690; RegulonDB:STMS1H003670" CDS 3880513..3881196 /locus_tag="STM3690" /codon_start=1 /transl_table=11 /product="putative inner membrane lipoprotein" /protein_id="NP_462590.1" /db_xref="GeneID:1255214" /translation="MHKNGKFIPLLALGFTFFLSGCDYFADKHLVEEMKEQQKEQETK INLLEKQQKEQEAKINLLEKQQATIINTTKKVTEVVGRVERKQRLFDYTELDPSQTHY FIINNGNIGLAGRILSIEPIDNGSVIHLDLVNLLSIPVSNLAFNMTWGTKKPSEAKDL PRWKQLLLNTKMDSTIELLPGAWTNVTLTLKGVSPNNLKYLKIGIDMENVIFDSIQPI NDTKKKPKK" misc_feature 3880612..3881121 /locus_tag="STM3690" /note="Protein of unknown function (DUF3251); Region: DUF3251; cl08186" /db_xref="CDD:415473" gene 3881233..3885625 /locus_tag="STM3691" /db_xref="GeneID:1255215" regulatory 3881233..3881238 /regulatory_class="ribosome_binding_site" /locus_tag="STM3691" /note="putative RBS for STM3691; RegulonDB:STMS1H003671" CDS 3881240..3885625 /locus_tag="STM3691" /note="similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 21% identity in aa 33 - 530, 22% identity in aa 123 - 528, 20% identity in aa 113 - 565, 24% identity in aa 164 - 579, 23-1073758628dentity in aa 75 - 485, 28% identity in aa 217 - 484, 25-1073758654dentity in aa 113 - 459, 21% identity in aa 174 - 486, 20% identity in aa 58 - 497, 19% identity in aa 2 - 486, 19% identity in aa 88 - 534, 20% identity in aa 125 - 463, 18% identity in aa 98 - 482, 22% identity in aa 645 - 1110, 19-1073758588dentity in aa 780 - 1104, 24% identity in aa 968 - 1113, 26-1073758532dentity in aa 961 - 1047, 22% identity in aa 967 - 1089, 22% identity in aa 962 - 1116, 29% identity in aa 965 - 1093, 23% identity in aa 1006 - 1114, 20-1073758588dentity in aa 765 - 859, 29% identity in aa 1011 - 1083, 23% identity in aa 982 - 1117, 24-1073758532dentity in aa 807 - 859, 25% identity in aa 965 - 1114, 25% identity in aa 787 - 873, 19% identity in aa 829 - 859" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462591.1" /db_xref="GeneID:1255215" /translation="MNRIFKVLWNAATGTFVVTSETAKSRGKKNGRRKLAVSALIGLS SIMVSADALANAGNDTGDGVTPTGTQTGGKGWIAIGTDATANTYTNVDGASAAMGYKA SAMGKWSTAIGSYSQSTGDSSLALGVKSVSAGDRAIAMGASSSASGSYSMAMGVYANS SGAKSVALGYKSVASGATSSALGYQATASGDDSAAFGNGAKAIGTNSVALGSGSVAQE DNSVAVGNSTTQRQITYVAKGDINSTSTDAVTGAQIYSLSQSVADRLGGGASVNSDGT VNAPLYEVGTGIYNNVGSALSALNTSITNTEASVAGLAEDALLWDESISAFSASHTGN ASKITNLAAGTLAADSTDAVNGSQLFDTNEKVDKNTADIATNTGSINQNTADITANTD SINQNTTDIAANTTSINQNTTDIATNTTNINSLSDSVTTLTDDALLWDAASGAFSAKH NGSDSKITNLAAGTLAADSTDAVNGSQLFDTNEKVDQNTADITTNTNSINQNTTDIAT NTTNINNLSDSITTLTDDALLWDAASGAFSANHNGSASKITNLAAGTLAADSTDAVNG SQLFATNENVSQNTADITTNTNSINQNTTDIATNTTSINNLSDSITTLTDDALLWDAA SGTFSASRSGSASKITNLAAGTLAADSTDAVNGSQLYETNQKVDQNTSAIADINTSIT NLSSDNLSWNETTSSFSASHGSSTTNKITNVAAGELSEESTDAVNGSQLFETNEKVDQ NTTDIAANTTNITQNSTAIENLNTSVSDINTSITGLTDNALLWDEDTGAFSANHGGST SKITNVAAGALSEDSTDAVNGSQLYETNQKVDQNTSAIADINTSITNLGTDALSWDDE EGAFSASHGTSGTNKITNVAAGEIASDSTDAVNGSQLYETNMLISQYNESISQLAGDT SETYITENGTGVKYIRTNDNGLEGQDAYATGNGATAVGYDAVASGAGSLALGQNSSSS IEGSIALGSGSTSNRAITTGIRETSATSDGVVIGYNTTDRELLGALSLGTDGESYRQI TNVADGSEAQDAVTVRQLQNAIGAVTTTPTKYYHANSTEEDSLAVGTDSLAMGAKTIV NADAGIGIGLNTLVMADAINGIAIGSNARANHANSIAMGNGSQTTRGAQTDYTAYNMD TPQNSVGEFSVGSEDGQRQITNVAAGSADTDAVNVGQLKVTDAQVSRNTQSITNLNTQ VSNLDTRVTNIENGIGDIVTTGSTKYFKTNTDGADANAQGADSVAIGSGSIAAAENSV ALGTNSVADEANTVSVGSSTQQRRITNVAAGVNNTDAVNVAQLKASEAGSVRYETNAD GSVNYSVLNLGDGSGGTTRIGNVSAAVNDTDAVNYAQLKRSVEEANTYTDQKMGEMNS KIKGVENKMSGGIASAMAMAGLPQAYAPGANMTSIAGGTFNGESAVAIGVSMVSESGG WVYKLQGTSNSQGDYSAAIGAGFQW" misc_feature 3881240..3881389 /locus_tag="STM3691" /note="Extended Signal Peptide of Type V secretion system; Region: ESPR; pfam13018" /db_xref="CDD:463773" misc_feature 3881522..3881926 /locus_tag="STM3691" /note="YadA-like, left-handed beta-roll; Region: LbR_YadA-like; cd12820" /db_xref="CDD:240612" misc_feature order(3881525..3881527,3881534..3881539,3881561..3881563, 3881576..3881581,3881603..3881605,3881609..3881611, 3881615..3881623,3881645..3881647,3881651..3881653, 3881699..3881707,3881729..3881731,3881735..3881737, 3881741..3881749,3881771..3881773,3881777..3881779, 3881783..3881791,3881813..3881815,3881819..3881821, 3881825..3881833,3881855..3881857,3881861..3881863, 3881867..3881872,3881882..3881884,3881888..3881893, 3881900..3881917) /locus_tag="STM3691" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:240612" misc_feature 3881969..>3882697 /locus_tag="STM3691" /note="Vomp family autotransporter C-terminal domain; Region: VOMP_auto_Cterm; NF033870" /db_xref="CDD:411434" misc_feature 3882644..>3883243 /locus_tag="STM3691" /note="Vomp family autotransporter C-terminal domain; Region: VOMP_auto_Cterm; NF033870" /db_xref="CDD:411434" misc_feature 3883103..3885619 /locus_tag="STM3691" /note="Autotransporter adhesin [Intracellular trafficking, secretion, and vesicular transport, Extracellular structures]; Region: Hia; COG5295" /db_xref="CDD:444098" gene 3885911..3887579 /gene="lldP" /locus_tag="STM3692" /db_xref="GeneID:1255216" regulatory 3885911..3885916 /regulatory_class="ribosome_binding_site" /gene="lldP" /locus_tag="STM3692" /note="putative RBS for lldP; RegulonDB:STMS1H003672" CDS 3885924..3887579 /gene="lldP" /locus_tag="STM3692" /note="similar to E. coli L-lactate permease (AAC76627.1); Blastp hit to AAC76627.1 (551 aa), 94% identity in aa 1 - 551; LctP transporter" /codon_start=1 /transl_table=11 /product="L-lactate permease" /protein_id="NP_462592.1" /db_xref="GeneID:1255216" /translation="MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAAS WTVVIALAVALLFYKMPVDHALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDI IRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFNPLYAAGLC LIVNTAPVAFGAMGIPILVAGQVTGLDSFEIGQMVGRQLPFLTIIVLFWIMAIMDGWR GVKETWPAVMVAGGSFAIAQYLSSNFIGPELPDIISSLVSLVCLTLFLKRWQPVRIFR FGDMGASQVDQTLARTRYTTGQIVRAWSPFLFLTATVTLWSVPPFKALFAPGGALYDW VINVPVPYLDKLVARMPPVVHEATAYAAVYKFDWFSATGTAILFAALLSIVWLKMKPS AAIQTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGSAFTFFSPFLG WLGVFLTGSDTSSNALFASLQATAAQQIGVSDVLMVAANTTGGVTGKMISPQSIAIAC AAVGLVGKESDLFRFTVKHSLIFTCMVGVITTLQAYVLTWMIP" misc_feature 3885924..3887576 /gene="lldP" /locus_tag="STM3692" /note="L-lactate permease; Provisional; Region: PRK10420" /db_xref="CDD:182445" gene 3887564..3888352 /gene="lldR" /locus_tag="STM3693" /db_xref="GeneID:1255217" regulatory 3887564..3887569 /regulatory_class="ribosome_binding_site" /gene="lldR" /locus_tag="STM3693" /note="putative RBS for lldR; RegulonDB:STMS1H003673" CDS 3887576..3888352 /gene="lldR" /locus_tag="STM3693" /note="similar to E. coli transcriptional regulator (AAC76628.1); Blastp hit to AAC76628.1 (258 aa), 86% identity in aa 1 - 258" /codon_start=1 /transl_table=11 /product="putative transcriptional GntR family regulator for lct operon" /protein_id="NP_462593.1" /db_xref="GeneID:1255217" /translation="MIVMPKRLSDEIASRVRALIEEQNLEAGMKLPAERQLALQLGVS RNSLREALAKLVSEGVLVSRRGGGTFVRWQHETWSEQNIVQPLKMLMANDPDYSFDIL EARHAIEASTAWHAAMRATAADKEKIRLCFDATLSEDPDLASQADVRFHLAIAEASHN VVLLQTMRGFFDVLQSSVKQSRQRMYLVPPVFSKLTEQHQAVMDAILDGNAEGARKAM MAHLSFVHTTIKRFDEDQARQARITRLPGDHNEMTRENKS" misc_feature 3887591..3888349 /gene="lldR" /locus_tag="STM3693" /note="DNA-binding transcriptional repressor LldR; Provisional; Region: PRK10421" /db_xref="CDD:236690" gene 3888334..3889539 /gene="lldD" /locus_tag="STM3694" /db_xref="GeneID:1255218" regulatory 3888334..3888339 /regulatory_class="ribosome_binding_site" /gene="lldR" /locus_tag="STM3693" /note="putative RBS for lldD; RegulonDB:STMS1H003674" CDS 3888349..3889539 /gene="lldD" /locus_tag="STM3694" /EC_number="1.1.2.3" /note="similar to E. coli L-lactate dehydrogenase (AAC76629.1); Blastp hit to AAC76629.1 (396 aa), 94% identity in aa 1 - 396" /codon_start=1 /transl_table=11 /product="L-lactate dehydrogenase" /protein_id="NP_462594.1" /db_xref="GeneID:1255218" /translation="MIISAASDYRAAAQRTLPPFLFHYIDGGAYAEYTLRRNVEDLSQ VALRQRVLKNMSDLSLETTLFNETLSMPVALAPVGLCGMYARRGEVQAAAAADAKGIP FTLSTVSVCPIEEVAPTIKRPMWFQLYVLRDRGFMRNALERAKAAGCSTLVFTVDMPT PGARYRDAHSGMSGPNAAMRRYWQAVMHPKWAWDVGLNGRPHDLGNISAYLGKPTGLE DYIGWLANNFDPSISWKDLEWIREFWDGPMVIKGILDPEDARDAVRFGADGIVVSNHG GRQLDGVLSSARALPAIADAVKGDIAILADSGIRNGLDVVRMIALGADTVLLGRAYLY ALATAGKAGVANLLDLIEKEMKVAMTLTGAKSISEISGDSLVQELGKSLPAALAPMSK GDAA" misc_feature 3888349..3889488 /gene="lldD" /locus_tag="STM3694" /note="L-lactate dehydrogenase; Provisional; Region: lldD; PRK11197" /db_xref="CDD:183033" gene 3889592..3890076 /gene="yibK" /locus_tag="STM3695" /db_xref="GeneID:1255219" regulatory 3889592..3889597 /regulatory_class="ribosome_binding_site" /gene="yibK" /locus_tag="STM3695" /note="putative RBS for yibK; RegulonDB:STMS1H003675" CDS 3889603..3890076 /gene="yibK" /locus_tag="STM3695" /EC_number="2.1.1.-" /note="similar to E. coli orf, hypothetical protein (AAC76630.1); Blastp hit to AAC76630.1 (157 aa), 94% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="putative tRNA/rRNA methyltransferase" /protein_id="NP_462595.1" /db_xref="GeneID:1255219" /translation="MLNIVLFEPEIPPNTGNIIRLCANTGFRLHIIEPMGFTWDDKRL RRAGLDYHEFAAVQRHHDYAAFVAAENPQRLFALTTKGTPAHSAVSYQDGDYLMFGPE TRGLPASILDALPKEQKIRIPMMPDSRSMNLSNAVSVVVYEAWRQLGYPGAVLRS" misc_feature 3889603..3890073 /gene="yibK" /locus_tag="STM3695" /note="tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL; Region: PRK10358" /db_xref="CDD:182406" misc_feature order(3889651..3889653,3889660..3889665,3889669..3889674, 3889678..3889680,3889750..3889752,3889759..3889761, 3889858..3889863,3889963..3889977,3889987..3889998, 3890002..3890007,3890014..3890019,3890026..3890031, 3890035..3890040) /gene="yibK" /locus_tag="STM3695" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349967" misc_feature order(3889834..3889842,3889897..3889908,3889912..3889920, 3889960..3889968,3889972..3889974,3889987..3889995, 3889999..3890001,3890008..3890010) /gene="yibK" /locus_tag="STM3695" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:349967" gene complement(3890144..3891155) /locus_tag="STM3696" /db_xref="GeneID:1255220" CDS complement(3890144..3891148) /locus_tag="STM3696" /note="similar to E. coli L-idonate transcriptional regulator (AAC77221.1); Blastp hit to AAC77221.1 (332 aa), 30% identity in aa 7 - 326" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_462596.1" /db_xref="GeneID:1255220" /translation="MKRTKSPRAPTLEDVARSAGLSPMTVSRALNSPQLVRPKTVEKV MQAVRVTGYIPNALAGGLASRRSKLIAVVVPQINNNMFVDTIQSLSDELARRGYHILL CVAGYTEQTEAELVATLLSRRPDGVVLTGIHHTIELKKVILNAAIPVVEIWDLTPTPL DMLVGFSHEKVGQATGEYLLSKGYRRPGLLWTADRRAAQRKQGLCSVLQRHAIHAVPQ VDVPLPASLSLGRSGLSQLFDEGTFDVIVCSSDTLAQGAMMEAESRGLRIPHDLAVIG FGDLDFAASNRPSITTVSVDRRAIGQRAATLLADRIEQKPCAEAIVDIGFHLIGRESA " misc_feature complement(3890912..3891121) /locus_tag="STM3696" /note="helix_turn _helix lactose operon repressor; Region: HTH_LACI; smart00354" /db_xref="CDD:197675" misc_feature complement(order(3890960..3890965,3890969..3890974, 3890981..3890983,3890990..3890992,3891029..3891031, 3891038..3891043,3891056..3891058,3891065..3891070, 3891074..3891088)) /locus_tag="STM3696" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature complement(3890963..3890992) /locus_tag="STM3696" /note="domain linker motif [active]" /db_xref="CDD:143331" misc_feature complement(3890150..3890944) /locus_tag="STM3696" /note="ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_GntR; cd01575" /db_xref="CDD:380489" misc_feature complement(order(3890372..3890374,3890456..3890458, 3890465..3890467,3890471..3890473,3890783..3890788, 3890792..3890797,3890804..3890806,3890843..3890854, 3890879..3890881,3890891..3890893,3890900..3890902, 3890918..3890920)) /locus_tag="STM3696" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:380489" misc_feature complement(order(3890264..3890266,3890315..3890317, 3890474..3890476,3890549..3890551,3890651..3890653, 3890690..3890692,3890759..3890761,3890894..3890896, 3890903..3890908)) /locus_tag="STM3696" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:380489" regulatory complement(3891150..3891155) /regulatory_class="ribosome_binding_site" /locus_tag="STM3696" /note="putative RBS for STM3696; RegulonDB:STMS1H003676" gene 3891459..3892663 /locus_tag="STM3697" /db_xref="GeneID:1255221" regulatory 3891459..3891464 /regulatory_class="ribosome_binding_site" /locus_tag="STM3697" /note="putative RBS for STM3697; RegulonDB:STMS1H003677" CDS 3891467..3892663 /locus_tag="STM3697" /note="muconate lactonizing enzyme family; similar to E. coli starvation sensing protein (AAC74653.1); Blastp hit to AAC74653.1 (404 aa), 32% identity in aa 18 - 153, 26% identity in aa 198 - 379, 42% identity in aa 370 - 388" /codon_start=1 /transl_table=11 /product="putative mandelate racemase" /protein_id="NP_462597.1" /db_xref="GeneID:1255221" /translation="MALSANSDAVTYAKAANTRTAAETGDRIEWVKLSLAFLPLATPV SDAKVLTGRQKPLTEVAIIIAEIRSRDGFEGVGFSYSKRAGGQGIYAHAKEIADNLLG EDPNDIDKIYTKLLWAGASVGRSGMAVQAISPIDIALWDMKAKRAGLPLAKLLGAHRD SVQCYNTSGGFLHTPLDQVLKNVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALG DEFPLMVDANQQWDRETAIRMGRKMEQFNLIWIEEPLDAYDIEGHAQLAAALDTPIAT GEMLTSFREHEQLILGNASDFVQPDAPRVGGISPFLKIMDLAAKHGRKLAPHFAMEVH LHLSAAYPLEPWLEHFEWLNPLFNEQLELRDGRMWISDRHGLGFTLSEQARRWTQLTC EFGKRP" misc_feature 3891545..3892603 /locus_tag="STM3697" /note="Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues; Region: MR_like; cd03316" /db_xref="CDD:239432" misc_feature order(3892049..3892051,3892055..3892057,3892142..3892144, 3892220..3892222,3892298..3892300,3892367..3892369, 3892448..3892450,3892508..3892510) /locus_tag="STM3697" /note="active site pocket [active]" /db_xref="CDD:239432" gene 3892729..3894047 /locus_tag="STM3698" /db_xref="GeneID:1255222" regulatory 3892729..3892734 /regulatory_class="ribosome_binding_site" /locus_tag="STM3698" /note="putative RBS for STM3698; RegulonDB:STMS1H003678" CDS 3892737..3894047 /locus_tag="STM3698" /note="similar to E. coli putative transport protein (AAC75831.1); Blastp hit to AAC75831.1 (450 aa), 49% identity in aa 9 - 444" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_462598.1" /db_xref="GeneID:1255222" /translation="MNTIIKRTKVRHTILIFLFLATVFNYADRATLSVVAPIMSKELG FDPEAMGLAFSSFGIAYVIMQLPGGWLLDRYGSRLVYGCALIGWSLVTMFQGTIYLYG SPLIVLVILRLLMGAIEAPAFPANSRLSVQWFPNNERGFVTSVYQAAQYISLGIITPL MTIILHNLSWHFVFYYIGAIGVMLGIFWLMKVKDPMHHPKVNQAEIDYIRSGGGEPSL GCKKEPQKITFAQIKTVCVNRMMIGVYIGQFCVTSITWFFLTWFPTYLYQAKGMSILK VGFVASIPAIAGFIGGLLGGVFSDWLLKRGYSLTVARKLPVICGMLLSCVIVIANYTS SEFVVIAAMSLAFFAKGFGNLGWCVLSDTSPKEVLGIAGGVFNMCGNMASIVTPLVIG VILANTQSFDFAILYVGSMGLIGLISYLFIVGPLDRITLTSSAA" misc_feature 3892794..3894005 /locus_tag="STM3698" /note="D-galactonate transporter; Region: 2A0114; TIGR00893" /db_xref="CDD:273326" gene complement(3894130..3894963) /gene="cysE" /locus_tag="STM3699" /db_xref="GeneID:1255223" CDS complement(3894130..3894951) /gene="cysE" /locus_tag="STM3699" /EC_number="2.3.1.30" /note="serine acetyltransferase. (SW:CYSE_SALTY)" /codon_start=1 /transl_table=11 /product="serine acetyltransferase" /protein_id="NP_462599.1" /db_xref="GeneID:1255223" /translation="MPCEELEIVWKNIKAEARALADCEPMLASFYHATLLKHENLGSA LSYMLANKLASPIMPAIAIREVVEEAYAADPEMIASAACDIQAVRTRDPAVDKYSTPL LYLKGFHALQAYRIGHWLWNKGRRALAIFLQNQVSVSFQVDIHPAAKIGRGIMLDHAT GIVVGETAVIEDDVSILQSVTLGGTGKTSGDRHPKIREGVMIGAGAKILGNIEVGRGA KIGAGSVVLQPVPPHTTAAGVPARIVGKPGSDKPSMDMDQHFNGIHHTFEYGDGI" misc_feature complement(3894133..3894951) /gene="cysE" /locus_tag="STM3699" /note="serine acetyltransferase; Provisional; Region: cysE; PRK11132" /db_xref="CDD:182987" misc_feature complement(order(3894271..3894273,3894277..3894279, 3894286..3894288,3894376..3894378,3894478..3894480, 3894523..3894525,3894529..3894531)) /gene="cysE" /locus_tag="STM3699" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:100045" misc_feature complement(order(3894232..3894234,3894247..3894249, 3894271..3894273,3894277..3894279,3894286..3894291, 3894295..3894297,3894340..3894342,3894373..3894378, 3894397..3894402,3894418..3894423,3894478..3894483)) /gene="cysE" /locus_tag="STM3699" /note="active site" /db_xref="CDD:100045" misc_feature complement(order(3894373..3894378,3894400..3894402, 3894478..3894483)) /gene="cysE" /locus_tag="STM3699" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:100045" misc_feature complement(order(3894232..3894234,3894247..3894249, 3894271..3894273,3894277..3894279,3894286..3894291, 3894295..3894297,3894340..3894342,3894397..3894402, 3894418..3894423)) /gene="cysE" /locus_tag="STM3699" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:100045" regulatory complement(3894958..3894963) /regulatory_class="ribosome_binding_site" /gene="cysE" /locus_tag="STM3699" /note="putative RBS for cysE; RegulonDB:STMS1H003679" gene complement(3895029..3896059) /gene="gpsA" /locus_tag="STM3700" /db_xref="GeneID:1255224" CDS complement(3895029..3896048) /gene="gpsA" /locus_tag="STM3700" /EC_number="1.1.1.8" /EC_number="1.1.1.94" /note="glycerol-3-phosphate dehydrogenase [NAD+]. (SW:GPDA_SALTY)" /codon_start=1 /transl_table=11 /product="glycerol-3-phosphate dehydrogenase (NAD+)" /protein_id="NP_462600.1" /db_xref="GeneID:1255224" /translation="MNQSNASMTVIGAGSYGTALAITLARNGHQVVLWGHDPKHIATL EHDRCNVAFLPDVPFPDTLHLESDLATALAASRNILVVVPSHVFSDVLRQIKPLMRPD ARLVWATKGLEAETGRLLQDVAREALGDQIPLAVISGPTFAKELAAGLPTAISLASTD ETFADDLQQLLHCGKSFRVYINADFIGVQLGGAVKNVIAIGAGMSDGIGFGANARTAL ITRGLTEMSRLGAALGADPATFMGMAGLGDLVLTCTDNQSRNRRFGMMLGQGMDVKGA QDKIGQVVEGYRNTKEVRELAHRFGVEMPITEEIYQVLYCGKNAREAALTLLGRARKE ELSRH" misc_feature complement(3895059..3896033) /gene="gpsA" /locus_tag="STM3700" /note="NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Region: gpsA; PRK00094" /db_xref="CDD:234629" gene complement(3896048..3896528) /gene="secB" /locus_tag="STM3701" /db_xref="GeneID:1255225" CDS complement(3896048..3896515) /gene="secB" /locus_tag="STM3701" /note="similar to E. coli protein export; molecular chaperone; may bind to signel sequence (AAC76633.1); Blastp hit to AAC76633.1 (155 aa), 96% identity in aa 1 - 155" /codon_start=1 /transl_table=11 /product="molecular chaperone in protein export" /protein_id="NP_462601.1" /db_xref="GeneID:1255225" /translation="MSEQNNTEMAFQIQRIYTKDVSFEAPNAPHVFQKDWQPEVKLDL DTASSQLADDVYEVVLRVTVTASLGEETAFLCEVQQAGIFSISGIEGTQMAHCLGAYC PNILFPYARECITSLVSRGTFPQLNLAPVNFDALFMNYLQQQAGEGTEEHQDA" misc_feature complement(3896063..3896515) /gene="secB" /locus_tag="STM3701" /note="preprotein translocase subunit SecB; Validated; Region: PRK05751" /db_xref="CDD:180234" misc_feature complement(order(3896285..3896287,3896291..3896293, 3896444..3896446,3896456..3896458)) /gene="secB" /locus_tag="STM3701" /note="SecA binding site [active]" /db_xref="CDD:238312" misc_feature complement(order(3896276..3896278,3896282..3896284, 3896288..3896290,3896294..3896296)) /gene="secB" /locus_tag="STM3701" /note="Preprotein binding site [active]" /db_xref="CDD:238312" regulatory complement(3896054..3896059) /regulatory_class="ribosome_binding_site" /gene="secB" /locus_tag="STM3701" /note="putative RBS for gpsA; RegulonDB:STMS1H003680" regulatory complement(3896523..3896528) /regulatory_class="ribosome_binding_site" /gene="secB" /locus_tag="STM3701" /note="putative RBS for secB; RegulonDB:STMS1H003681" gene complement(3896559..3896823) /gene="grxC" /locus_tag="STM3702" /db_xref="GeneID:1255226" CDS complement(3896559..3896810) /gene="grxC" /locus_tag="STM3702" /note="similar to E. coli glutaredoxin 3 (AAC76634.1); Blastp hit to AAC76634.1 (83 aa), 89% identity in aa 1 - 83" /codon_start=1 /transl_table=11 /product="glutaredoxin 3" /protein_id="NP_462602.1" /db_xref="GeneID:1255226" /translation="MANIEIYTKATCPFCHRAKALLNSKGVSFQEIAIDGDAVKREEM IKRSGRTTVPQIFIDAQHIGGCDDLYALDARGGLDPLLR" misc_feature complement(3896562..3896810) /gene="grxC" /locus_tag="STM3702" /note="glutaredoxin 3; Provisional; Region: PRK10638" /db_xref="CDD:182607" misc_feature complement(order(3896652..3896657,3896769..3896777, 3896784..3896786)) /gene="grxC" /locus_tag="STM3702" /note="GSH binding site [chemical binding]; other site" /db_xref="CDD:239510" misc_feature complement(order(3896766..3896768,3896775..3896777)) /gene="grxC" /locus_tag="STM3702" /note="catalytic residues [active]" /db_xref="CDD:239510" regulatory complement(3896818..3896823) /regulatory_class="ribosome_binding_site" /gene="grxC" /locus_tag="STM3702" /note="putative RBS for grxC; RegulonDB:STMS1H003682" gene complement(3896897..3897328) /gene="yibN" /locus_tag="STM3703" /db_xref="GeneID:1255227" CDS complement(3896897..3897328) /gene="yibN" /locus_tag="STM3703" /note="similar to E. coli orf, hypothetical protein (AAC76635.1); Blastp hit to AAC76635.1 (143 aa), 93% identity in aa 1 - 143" /codon_start=1 /transl_table=11 /product="putative rhodanese-related sulfurtransferases" /protein_id="NP_462603.1" /db_xref="GeneID:1255227" /translation="MQEIMQFVGRHPILSIAWIALLVAVLFTTFKGLTSKVKVITRGE ATRLINKEDAVVVDLRQRDDFRKGHIAGATNLLPSEIKANNVGELEKHKDKPIIVVDG SGMQCQESANALTKAGFEKVFVLKEGVAGWSGENLPLVRGK" misc_feature complement(3896900..3897226) /gene="yibN" /locus_tag="STM3703" /note="Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]; Region: PspE; COG0607" /db_xref="CDD:440372" gene 3897564..3899120 /gene="pmgI" /locus_tag="STM3704" /db_xref="GeneID:1255228" regulatory 3897564..3897569 /regulatory_class="ribosome_binding_site" /gene="pmgI" /locus_tag="STM3704" /note="putative RBS for pmgI; RegulonDB:STMS1H003683" CDS 3897576..3899120 /gene="pmgI" /locus_tag="STM3704" /note="similar to E. coli putative 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (AAC76636.1); Blastp hit to AAC76636.1 (514 aa), 94% identity in aa 1 - 514" /codon_start=1 /transl_table=11 /product="phosphoglyceromutase" /protein_id="NP_462604.1" /db_xref="GeneID:1255228" /translation="MSVSKKPMVLVILDGYGYREEQQDNAILNAKTPVMDALWAKRPH TLIDASGLEVGLPDRQMGNSEVGHVNLGAGRIVYQDLTRLDVEIKERTFFANPVLTNA VDQAKNAGKAVHIMGLLSAGGVHSHEDHIMAMVELAAERGAEKIYLHAFLDGRDTPPR SAEASLKKFEDKFAALGKGRVASIVGRYYAMDRDNRWDRVEKAYDLMTLAQGEFQADT AVAGLQAAYARDENDEFVKATVIRAEGQADAAMEDGDTLIFMNFRADRAREITRAFVN ADFDGFARKKVVNLNFVMLTEYAADIKTAVAYPPASLANTFGEWMAKNDKTQLRISET EKYAHVTFFFNGGVEEPFAGEERILINSPKVATYDLQPEMSSAELTEKLVAAIESGKY DTIICNYPNGDMVGHTGVMEAAIKAVEALDNCIEQVTKAVESVGGQLLITADHGNAEQ MRDPATGQAHTAHTNLPVPLIYVGEKNVKAVEGGKLSDIAPTMLSLMGMEIPQEMTGK PLFIVE" misc_feature 3897579..3899111 /gene="pmgI" /locus_tag="STM3704" /note="2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Region: PRK05434" /db_xref="CDD:235463" gene 3899112..3900413 /gene="yibP" /locus_tag="STM3705" /db_xref="GeneID:1255229" regulatory 3899112..3899117 /regulatory_class="ribosome_binding_site" /gene="yibP" /locus_tag="STM3705" /note="putative RBS for yibP; RegulonDB:STMS1H003684" CDS 3899130..3900413 /gene="yibP" /locus_tag="STM3705" /note="similar to E. coli putative membrane protein (AAC76637.1); Blastp hit to AAC76637.1 (427 aa), 91% identity in aa 1 - 427" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462605.1" /db_xref="GeneID:1255229" /translation="MRGKAINTIQQAVKPRTFSVRPLFYASVLSAGVLLCAFSAHADD RDQLKSIQADIAAKERDVRQQQQQRASLLAQLKAQEEAISAAARKLRETQSTLDQLNA QIDEMNASIAKLEQQKASQERNLAAQLDAAFRQGEHTGIQLILSGEESQRGQRLQAYF GYLNQARQETIAELKQTREQVATQKAELEEKQSQQQTLLYEQRAQQAKLEQARNERKK TLAGLESSIQQGQQQLSELRANESRLRNSIARAEAAAKARAEREAREAQAVRDKQQEA SRKGSTYKPTESERSLMSRTGGLGAPRGQAYWPVRGPILHRYGERLQGELRWKGMVIG ASEGTEVKAIADGRVILADWLQGYGLVVVVEHGKGDMSLYGYNQSALVSVGAQVRAGQ PIALVGSSGGQGRPSLYFEIRRQGQAVNPQPWLGR" misc_feature 3899130..3900410 /gene="yibP" /locus_tag="STM3705" /note="AmiB activator; Provisional; Region: PRK11637" /db_xref="CDD:236942" gene 3900398..3901379 /gene="yigQ" /locus_tag="STM3706" /db_xref="GeneID:1255230" regulatory 3900398..3900403 /regulatory_class="ribosome_binding_site" /gene="yigQ" /locus_tag="STM3706" /note="putative RBS for yigQ; RegulonDB:STMS1H003685" CDS 3900417..3901379 /gene="yigQ" /locus_tag="STM3706" /note="similar to E. coli orf, hypothetical protein (AAC76638.1); Blastp hit to AAC76638.1 (277 aa), 81% identity in aa 1 - 276" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462606.1" /db_xref="GeneID:1255230" /translation="MPQFRRSILTLATLLAFAHPVFAGKLAIVIDDFGYRPHTENQVL ALPPNISVAVLPNAPHAREMATKAHNSGHEVLIHLPMAPLSKQPLEKDTLRPDMSSDE IERIIREAVNNVPYAVGLNNHMGSAMTSSLFGMQKVMQALEHYNLYFLDSMTIGNSQA MRAASGTGVKVIKRKVFLDDTQNEADIRRQFNRAIELARRNGSAIAIGHPHPATVRVL QQMVYRLPADITLVRPGSLLNEPQVDTSRPGVTPQKIDAPRNPFRGVKMCKPKKPLQP VYATRFFSVIGESITQSSVVTWFQHQWQGWGKIAAPKNVSAKTD" misc_feature <3900462..3901133 /gene="yigQ" /locus_tag="STM3706" /note="Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family [Carbohydrate transport and metabolism]; Region: YibQ; COG2861" /db_xref="CDD:442108" gene complement(3901366..3902412) /gene="yibD" /locus_tag="STM3707" /db_xref="GeneID:1255231" CDS complement(3901366..3902400) /gene="yibD" /locus_tag="STM3707" /note="similar to E. coli putative regulator (AAC76639.1); Blastp hit to AAC76639.1 (344 aa), 80% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="putative glycosyltransferase" /protein_id="NP_462607.1" /db_xref="GeneID:1255231" /translation="MKNSKTKVSIIVPLYNAGADFNACMASLIAQTWSALEIIIVNDG STDHSVEIAKHYAEHYPHVRLLHQANAGASVARNLGLQAATGDYVAFVDADDQVYPKM YETLMTMALNDDLDVAQCNADWCVRKTGHAWQSIPTDRLRSTGVLSGPDWLRMALASR RWTHVVWMGVYRRALITDNNITFVPGLHHQDILWSTEVMFNATRVRYTEQSLYKYFLH DNSVSRLQRQGNKNLNYQRHYIKITRLLEKLNRDYARRIPIYPEFRQQITWEALRVCH AVRKEPDILTRQRMIAEIFTSGMYRRMMANVRSAKAAYQTLLWSFRLWQWRDKTLSHR RMARKALNLS" misc_feature complement(3901417..3902400) /gene="yibD" /locus_tag="STM3707" /note="putative glycosyl transferase; Provisional; Region: PRK10073" /db_xref="CDD:182223" regulatory complement(3902407..3902412) /regulatory_class="ribosome_binding_site" /gene="yibD" /locus_tag="STM3707" /note="putative RBS for yibD; RegulonDB:STMS1H003686" gene complement(3902894..3903930) /gene="tdh" /locus_tag="STM3708" /db_xref="GeneID:1255232" CDS complement(3902894..3903919) /gene="tdh" /locus_tag="STM3708" /EC_number="1.1.1.103" /note="similar to E. coli threonine dehydrogenase (AAC76640.1); Blastp hit to AAC76640.1 (341 aa), 97% identity in aa 1 - 341" /codon_start=1 /transl_table=11 /product="threonine 3-dehydrogenase" /protein_id="NP_462608.1" /db_xref="GeneID:1255232" /translation="MKALSKLKAEEGIWMTDVPEPEVGHNDLLIKIRKTAICGTDVHI YNWDDWSQKTIPVPMVVGHEYVGEVVGIGQEVKGFKIGDRVSGEGHITCGHCRNCRGG RTHLCRNTTGVGVNRPGCFAEYLVIPAFNAFKIPDNISDDLASIFDPFGNAVHTALSF DLVGEDVLVSGAGPIGVMAAAVAKHVGARHVVITDVNEYRLELARKMGVTRAVNVAKE SLNDVMAELGMTEGFDVGLEMSGAPPAFRTMLDTMNHGGRIAMLGIPPSDMSIDWTKV IFKGLFIKGIYGREMFETWYKMAALIQSGLDLSPIITHRFSIDDFQKGFDAMRSGQSG KVILSWD" misc_feature complement(3902897..3903919) /gene="tdh" /locus_tag="STM3708" /note="L-threonine 3-dehydrogenase; Validated; Region: tdh; PRK05396" /db_xref="CDD:180054" misc_feature complement(order(3903056..3903064,3903131..3903136, 3903200..3903205,3903275..3903277,3903320..3903322, 3903332..3903337,3903392..3903409,3903464..3903466, 3903476..3903478,3903791..3903793,3903800..3903808)) /gene="tdh" /locus_tag="STM3708" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176184" regulatory complement(3903925..3903930) /regulatory_class="ribosome_binding_site" /gene="tdh" /locus_tag="STM3708" /note="putative RBS for tdh; RegulonDB:STMS1H003687" gene complement(3903929..3905189) /gene="kbl" /locus_tag="STM3709" /db_xref="GeneID:1255233" CDS complement(3903929..3905125) /gene="kbl" /locus_tag="STM3709" /EC_number="2.3.1.29" /note="glycine acetyltransferase; 2-amino-3-ketobutyrate coenzyme A ligase. (SW:KBL_SALTY)" /codon_start=1 /transl_table=11 /product="2-amino-3-ketobutyrate CoA ligase" /protein_id="NP_462609.1" /db_xref="GeneID:1255233" /translation="MRGDFYKQLTNDLETARAEGLFKEERIITSAQQADITVADGSHV INFCANNYLGLANHPELINAAKAGMDSHGFGMASVRFICGTQDSHKALEQKLASFLGM EDAILYSSCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKRYRYANNDMAE LEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFV GENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNS LAPAIVAASIKVLEMVEAGAELRDRLWANARQFREQMSAAGFTLAGADHAIIPVMLGD AVVAQKFARELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVDAFTRIGK QLGVIA" misc_feature complement(3903935..3905125) /gene="kbl" /locus_tag="STM3709" /note="2-amino-3-ketobutyrate coenzyme A ligase; Provisional; Region: PRK06939" /db_xref="CDD:235893" misc_feature complement(order(3904022..3904024,3904394..3904396, 3904403..3904405,3904487..3904492,3904496..3904498, 3904568..3904573,3904583..3904585,3904718..3904720, 3904790..3904798,3904976..3904978)) /gene="kbl" /locus_tag="STM3709" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:99747" misc_feature complement(order(3904394..3904396,3904403..3904405, 3904487..3904492,3904496..3904498,3904571..3904573, 3904583..3904585,3904718..3904720,3904790..3904798)) /gene="kbl" /locus_tag="STM3709" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99747" misc_feature complement(3904394..3904396) /gene="kbl" /locus_tag="STM3709" /note="catalytic residue [active]" /db_xref="CDD:99747" regulatory complement(3905133..3905138) /regulatory_class="ribosome_binding_site" /gene="kbl" /locus_tag="STM3709" /note="putative RBS for kbl; RegulonDB:STMS1H003688" regulatory complement(3905165..3905173) /regulatory_class="minus_10_signal" /gene="kbl" /locus_tag="STM3709" /note="putative -10_signal for kbl; RegulonDB:STMLTH004610" regulatory complement(3905181..3905189) /regulatory_class="minus_35_signal" /gene="kbl" /locus_tag="STM3709" /note="putative -35_signal for kbl; RegulonDB:STMLTH004610" protein_bind complement(3905204..3905218) /note="putative binding site for Lrp, RegulonDB: STMS1H000267" /bound_moiety="Lrp" protein_bind complement(3905214..3905226) /note="putative binding site for Lrp, RegulonDB: STMS1H000250" /bound_moiety="Lrp" gene 3905316..3906260 /gene="rfaD" /locus_tag="STM3710" /db_xref="GeneID:1255234" regulatory 3905316..3905321 /regulatory_class="ribosome_binding_site" /gene="rfaD" /locus_tag="STM3710" /note="putative RBS for rfaD; RegulonDB:STMS1H003689" CDS 3905328..3906260 /gene="rfaD" /locus_tag="STM3710" /EC_number="5.1.3.20" /note="ADP-L-glycero-D-manno-heptose-6-epimerase. (SW:RFAD_SALTY)" /codon_start=1 /transl_table=11 /product="ADP-L-glycero-D-mannoheptose-6-epimerase" /protein_id="NP_462610.1" /db_xref="GeneID:1255234" /translation="MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFVNLVD LNIADYMDKEDFLIQIMSGEELGDIEAIFHEGACSSTTEWDGKYMMDNNYQYSKELLH YCLEREIPFLYASSAATYGGRTSDFIESREYEKPLNVYGYSKFLFDEYVRQILPEANS QIVGFRYFNVYGPREGHKGSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVA AVNLWFLESGKSGIFNLGTGRAESFQAVADATLAYHKKGSIEYIPFPDKLKGRYQAFT QADLTNLRNAGYDKPFKTVAEGVTEYMAWLNRDA" misc_feature 3905328..3906251 /gene="rfaD" /locus_tag="STM3710" /note="ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional; Region: rfaD; PRK11150" /db_xref="CDD:182998" misc_feature order(3905340..3905345,3905352..3905360,3905415..3905423, 3905439..3905441,3905484..3905486,3905550..3905558, 3905562..3905564,3905589..3905591,3905601..3905603, 3905613..3905615,3905667..3905675,3905745..3905747, 3905757..3905759,3905826..3905831,3905835..3905837, 3905856..3905861) /gene="rfaD" /locus_tag="STM3710" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187559" misc_feature order(3905424..3905429,3905433..3905438,3905442..3905444, 3905451..3905456,3905460..3905477,3905481..3905483, 3905577..3905588,3905595..3905597,3905607..3905609, 3905619..3905621,3905718..3905720,3905730..3905744, 3905751..3905753,3905763..3905765,3905772..3905777, 3905784..3905786) /gene="rfaD" /locus_tag="STM3710" /note="homopentamer interface [polypeptide binding]; other site" /db_xref="CDD:187559" misc_feature order(3905568..3905570,3905832..3905834,3905865..3905873, 3905877..3905879,3905886..3905888,3905952..3905954, 3906054..3906056) /gene="rfaD" /locus_tag="STM3710" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:187559" misc_feature order(3905604..3905606,3905673..3905675,3905745..3905747, 3905757..3905759) /gene="rfaD" /locus_tag="STM3710" /note="active site" /db_xref="CDD:187559" gene 3906263..3907309 /gene="rfaF" /locus_tag="STM3711" /db_xref="GeneID:1255235" CDS 3906263..3907309 /gene="rfaF" /locus_tag="STM3711" /note="AFP-heptose--lps heptosyltransferase II. (SW:RFAF_SALTY)" /codon_start=1 /transl_table=11 /product="ADP-heptose; LPS heptosyltransferase 1" /protein_id="NP_462611.1" /db_xref="GeneID:1255235" /translation="MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAWCRPL LSRMPEVNEAIPMPLGHGALEIGERRRLGHSLREKRYDRAWVLPNSFKSALIPFFANI PHRTGWRGEMRYGLLNDARVLDKDAWPLMVERYVALAYDKGVMRAAKDLPQPLLWPQL QVSEGEKSLMCSDFSLSSERPLIGFCPGAEFGPAKRWPHYHYAELAKQLINEGYQVVL FGSAKDHEAGNEILAALNSEQQAWCRNLAGETQLEQAVILIAACKAIVTNDSGLMHVA AALDRPLVALYGPSSPDFTPPLSHKARVIRLITGYHKVRKGDTAQGYHQSLIDITPQR VLEELHSLLSEEGV" misc_feature 3906263..3907306 /gene="rfaF" /locus_tag="STM3711" /note="ADP-heptose--LPS heptosyltransferase RfaF; Region: PRK10916" /db_xref="CDD:182835" misc_feature order(3906815..3906820,3906917..3906919,3907025..3907030, 3907064..3907066,3907073..3907078,3907085..3907087) /gene="rfaF" /locus_tag="STM3711" /note="putative active site [active]" /db_xref="CDD:340821" gene 3907298..3908262 /gene="rfaC" /locus_tag="STM3712" /db_xref="GeneID:1255236" regulatory 3907298..3907303 /regulatory_class="ribosome_binding_site" /gene="rfaC" /locus_tag="STM3712" /note="putative RBS for rfaC; RegulonDB:STMS1H003690" CDS 3907309..3908262 /gene="rfaC" /locus_tag="STM3712" /note="lipopolysaccharide heptosyltransferase-1. (SW:RFAC_SALTY)" /codon_start=1 /transl_table=11 /product="heptosyl transferase I" /protein_id="NP_462612.1" /db_xref="GeneID:1255236" /translation="MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWAVEEGFAQI PSWHSAVDRVIPVAIRRWRKAWFSAPIKAERTAFRRAVCANQYDAVIDAQGLVKSAAL VTRLAHGIKHGMDWSTAREPLASLFYNRKHHIAKQQHAVERTRELFAKSLGYDKPQSQ GDYAIAKHFLHCQQAVSDPYAVFLHATTRDDKHWPEANWRELIGLVGNTGLRIKLPWG APHEEARAKRLAEGFDYVDVLPRMSLEEVARVLAGAKFVVSVDTGLSHLTAALDRPNI TLYGPTDPGLIGGYGKNQMACCSPEQNLANLDATSVFGKIH" misc_feature 3907309..3908259 /gene="rfaC" /locus_tag="STM3712" /note="lipopolysaccharide heptosyltransferase RfaC; Region: PRK10964" /db_xref="CDD:236809" misc_feature order(3907855..3907860,3907954..3907956,3908047..3908052, 3908086..3908088,3908095..3908100,3908107..3908109) /gene="rfaC" /locus_tag="STM3712" /note="putative active site [active]" /db_xref="CDD:340821" gene 3908295..3909516 /gene="rfaL" /locus_tag="STM3713" /db_xref="GeneID:1255237" regulatory 3908295..3908300 /regulatory_class="ribosome_binding_site" /gene="rfaL" /locus_tag="STM3713" /note="putative RBS for rfaL; RegulonDB:STMS1H003691" CDS 3908302..3909516 /gene="rfaL" /locus_tag="STM3713" /note="O-antigen ligase. (SW:RFAL_SALTY)" /codon_start=1 /transl_table=11 /product="O-antigen ligase" /protein_id="NP_462613.1" /db_xref="GeneID:1255237" /translation="MLTTSLTLNKEKWKPIWNKALVFLFVATYFLDGITRYKHLIIIL MVITAIYQVSRSPKSFPPLFKNSVFYSVAVLSLILVYSILISPDMKESFKEFENTVLE GFLLYTLLIPVLLKDETKETVAKIVLFSFLTSLGLRCLAESILYIEDYNKGIMPFISY AHRHMSDSMVFLFPALLNIWLFRKNAIKLVFLVLSAIYLFFILGTLSRGAWLAVLIVG VLWAILNRQWKLIGVGAILLAIIGALVITQHNNKPDPEHLLYKLQQTDSSYRYTNGTQ GTAWILIQENPIKGYGYGNDVYDGVYNKRVVDYPTWTFKESIGPHNTILYIWFSAGIL GLASLVYLYGAIIRETASSTLRKVEISPYNAHLLLFLSFVGFYIVRGNFEQVDIAQIG IITGFLLALRNR" misc_feature 3908314..3909513 /gene="rfaL" /locus_tag="STM3713" /note="O-antigen ligase RfaL; Provisional; Region: PRK15487" /db_xref="CDD:185384" gene complement(3909573..3910724) /gene="rfaK" /locus_tag="STM3714" /db_xref="GeneID:1255238" CDS complement(3909573..3910718) /gene="rfaK" /locus_tag="STM3714" /EC_number="2.4.1.56" /note="lipopolysaccharide core biosynthesis; lipopolysaccharide 1,2-N-acetylglucosaminetransferase. (SW:RFAK_SALTY)" /codon_start=1 /transl_table=11 /product="putative hexose transferase" /protein_id="NP_462614.1" /db_xref="GeneID:1255238" /translation="MIKKIIFTVTPIFSIPPRGAAAVETWIYQVAKRLSIPNAIACIK NAGYPEYNKINDNCDIHYIGFSKVYKRLFQKWTRLDPLPYSQRILNIRDKVTTQEDSV IVIHNSMKLYRQIRERNPNAKLVMHMHNAFEPELPDNDAKIIVPSQFLKAFYEERLPA AAVSIVPNGFCAETYKRNPQDNLRQQLNIAEDATVLLYAGRISPDKGILLLLQAFKQL RTLRSNIKLVVVGDPYASRKGEKAEYQKKVLDAAKEIGTDCIMAGGQSPDQMHNFYHI ADLVIVPSQVEEAFCMVAVEAMAAGKAVLASKKGGISEFVLDGITGYHLAEPMSSDSI INDINRALADKERHQIAEKAKSLVFSKYSWENVAQRFEEQMKNWFDK" misc_feature complement(3909579..3910718) /gene="rfaK" /locus_tag="STM3714" /note="lipopolysaccharide N-acetylglucosaminyltransferase; Region: PRK15484" /db_xref="CDD:185381" regulatory complement(3910719..3910724) /regulatory_class="ribosome_binding_site" /gene="rfaK" /locus_tag="STM3714" /note="putative RBS for rfaK; RegulonDB:STMS1H003692" gene complement(3910819..3911628) /gene="rfaZ" /locus_tag="STM3715" /db_xref="GeneID:1255239" CDS complement(3910819..3911628) /gene="rfaZ" /locus_tag="STM3715" /note="lipopolysaccharide core biosynthesis protein RFAZ. (SW:RFAZ_SALTY)" /codon_start=1 /transl_table=11 /product="lipopolysaccharide core biosynthesis protein" /protein_id="NP_462615.1" /db_xref="GeneID:1255239" /translation="MGSVNFITHADVLQLIAKRTAEDCIIFLSGPTSRKTPLSLLRMK DVIAVNGSVQYLLNNNVKPFLYLLTDIRFLHRRREDFYNFSRNSQFTIVNLDVYEQAS VDDQKYIEENCLIIRSFYRREKGGFLKKIKFNILKRVHKALLISVPLSKRGRLAGFCK DISIGYCSCHTIAYTAIQVAYSLKYGRIICSGLDLTGSCPRFYDESTSPMPSELSKDL FKILPFFTFMRKNVSDLNIFNLSDDTAIHYDIIPYITASELEDEIYYDKIV" misc_feature complement(3910822..3911628) /gene="rfaZ" /locus_tag="STM3715" /note="lipopolysaccharide core biosynthesis protein; Provisional; Region: PRK09822" /db_xref="CDD:182095" gene complement(3911778..3912476) /gene="rfaY" /locus_tag="STM3716" /db_xref="GeneID:1255240" CDS complement(3911778..3912476) /gene="rfaY" /locus_tag="STM3716" /note="modification of heptose region of the core; lipopolysaccharide core biosynthesis protein RFAY. (SW:RFAY_SALTY)" /codon_start=1 /transl_table=11 /product="lipopolysaccharide core biosynthesis protein" /protein_id="NP_462616.1" /db_xref="GeneID:1255240" /translation="MIIEKKIKNYTVFVKKDGEKYIEIFKDFLSYNHQVIKVFRNIED TKVVLINTDYGKYILKVFSPKVKNTERFFKSLVKGDYYEKLFHQTDRVRREGFAALND FYLLAEIKTLRYVKTYVMIIEYIEGIELVDMPEISDEVRGKIKQSIYSLHQHGMVSGD PHKGNFILQGNEIRIIDLSGKRPSRQRKAKDRIDLERHYGIKNNVRDIGFYLLIYKKK LRNFLRRIKGKEKR" misc_feature complement(3911790..3912476) /gene="rfaY" /locus_tag="STM3716" /note="The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases; Region: Protein Kinases, catalytic domain; cl21453" /db_xref="CDD:473864" gene complement(3912499..3913520) /gene="rfaJ" /locus_tag="STM3717" /db_xref="GeneID:1255241" CDS complement(3912499..3913509) /gene="rfaJ" /locus_tag="STM3717" /EC_number="2.4.1.58" /note="lipopolysaccharide 1,2-glucosyltransferase. (SW:RFAJ_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase" /protein_id="NP_462617.1" /db_xref="GeneID:1255241" /translation="MDSFPEIEIAEYKVFDESNNNDDNVLNISYGVDENYLDGVGVSI ASVVLNNNIPLAFHIICDSYSPCFVKYIERLAVQHHIKISLYLIKVESLEVLPQTKVW SRAMYFRLFAFDYLSKKVNTLLYLDADVVCKGSLQDLLQLDLTEKIAAVVKDVDSIQN KVNERLSAFNLQGGYFNSGVVFVNLKLWKENALTKKAFLLLAGKEADSFKYPDQDVLN ILLQDKVIFLPRPYNTIYTIKSELKDKSHKKYSNIINDNTILIHYTGATKPWHAWANY PSVIYYKNARLNSPWKDFPAKDARTIVEFKKRYKHLLVQGHYFKGLLAGSAYLYRKLF HK" misc_feature complement(3912541..3913446) /gene="rfaJ" /locus_tag="STM3717" /note="Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]; Region: RfaJ; COG1442" /db_xref="CDD:441051" regulatory complement(3913515..3913520) /regulatory_class="ribosome_binding_site" /gene="rfaJ" /locus_tag="STM3717" /note="putative RBS for rfaJ; RegulonDB:STMS1H003693" gene complement(3913527..3914540) /gene="rfaI" /locus_tag="STM3718" /db_xref="GeneID:1255242" CDS complement(3913527..3914540) /gene="rfaI" /locus_tag="STM3718" /EC_number="2.4.1.44" /note="lipopolysaccharide 1,3-galactosyltransferase. (SW:RFAI_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase" /protein_id="NP_462618.1" /db_xref="GeneID:1255242" /translation="MSRKYFEEEVIQQTLDYNYAQHSDADKFNIAYGIDKNFLFGCGV SIASVLLANPEKALAFHVFTDFFDSEDQQRFEALAKQYATQIVVYLIDCERLKSLPST KNWTYATYFRFIIADYFSDKTDRVLYLDADIACKGSIQELIDLNFAENEIAAVVAEGE LEWWTKRSVSLATPGLVSGYFNAGFILINIPLWTAENISKKAIEMLKDPEVVQRITHL DQDVLNIFLVNKARFVDKKFNTQFSLNYELKDSVINPVDAETVFVHYIGPTKPWHSWG AYPVSQYFLQAKSNSPWSHCALLNPVTSHQLRYAAKHMFNQKHYTSGINYYIAYFKRK LLE" misc_feature complement(3913533..3914534) /gene="rfaI" /locus_tag="STM3718" /note="lipopolysaccharide 3-alpha-galactosyltransferase; Region: PRK15171" /db_xref="CDD:185093" gene complement(3914546..3915636) /gene="rfaB" /locus_tag="STM3719" /db_xref="GeneID:1255243" CDS complement(3914546..3915625) /gene="rfaB" /locus_tag="STM3719" /EC_number="2.4.1.-" /note="lipopolysaccharide 1,6-galactosyltransferase. (SW:RFAB_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase" /protein_id="NP_462619.1" /db_xref="GeneID:1255243" /translation="MKIAFIGEAVSGFGGMETVISNVIHTFENSSPKINCEMFFFCRN DKMDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSQWLKETSPDIVICIDVISCLYAN KARKKSGKHFTIFSWPHFSLDHKKHAECITYADYHLAISSGIKEQIMARGISAQDISV VYNPVSIKTVIVPPPERDKPAVFLYVGRLKFEGQKRVKDLFDGLARTTGEWQLHIIGD GSDFEKCQAYSRELGIEQRVIWYGWQSAPWQVVQQKIKNVTALLLTSAFEGFPMTLLE AMSYGIPCISSDCMSGPRDMIKPGLNGELYTPGAIDDFVGHLNRVISGEVKYQHDIIP GTIERFYDVLYFKNFNNAIFSKLQK" misc_feature complement(3914549..3915625) /gene="rfaB" /locus_tag="STM3719" /note="lipopolysaccharide 1,6-galactosyltransferase; Region: PRK09922" /db_xref="CDD:182148" regulatory complement(3915631..3915636) /regulatory_class="ribosome_binding_site" /gene="rfaB" /locus_tag="STM3719" /note="putative RBS for rfaB; RegulonDB:STMS1H003694" gene complement(3915695..3915928) /gene="yibR" /locus_tag="STM3720" /db_xref="GeneID:1255244" CDS complement(3915695..3915928) /gene="yibR" /locus_tag="STM3720" /note="hypothetical 9.0 Kda protein in rfaB-rfaP intergenic region. (SW:YIBR_SALTY)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462620.1" /db_xref="GeneID:1255244" /translation="MSETRIDRMSNIKSYISNQKNIIQHDDFFGRRLDIALCFDHGFI MPAGVAIYSIIENNKDIDYALKQKERCQVKITL" misc_feature complement(<3915740..3915838) /gene="yibR" /locus_tag="STM3720" /note="Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase [Cell wall/membrane/envelope biogenesis]; Region: RfaJ; COG1442" /db_xref="CDD:441051" gene complement(3915960..3916769) /gene="rfaP" /locus_tag="STM3721" /db_xref="GeneID:1255245" CDS complement(3915960..3916757) /gene="rfaP" /locus_tag="STM3721" /note="phosphorylation of core heptose; lipopolysaccharide core biosynthesis protein RFAP. (SW:RFAP_SALTY)" /codon_start=1 /transl_table=11 /product="lipopolysaccharide core biosynthesis protein" /protein_id="NP_462621.1" /db_xref="GeneID:1255245" /translation="MVELKAPLTTLWRGKDAFEEVKTLQGEVFRELETRRTLRFELDG KSYFLKWHKGTSLKEIVKNLISLRMPVLGADREWHAIHRLHELGVDTMHGVGFGEKGV NPLTRTSFIITEDLTPTISLEDYCADWAVNPPDAQVKWMIIKRVATMVRKMHAGGINH RDCYICHFLLHLPFTGREEDLKISVIDLHRAQIRQHVPLRWRDKDLIGLYFSSMNIGL TQRDIFRFMREYFSLPLREILQKESGLIHQADVKAARIKERTIRKNL" misc_feature complement(3915963..3916757) /gene="rfaP" /locus_tag="STM3721" /note="lipopolysaccharide core heptose(I) kinase RfaP; Provisional; Region: PRK15123" /db_xref="CDD:237915" gene complement(3916750..3917888) /gene="rfaG" /locus_tag="STM3722" /db_xref="GeneID:1255246" CDS complement(3916750..3917874) /gene="rfaG" /locus_tag="STM3722" /note="similar to E. coli glucosyltransferase I; lipopolysaccharide core biosynthesis (AAC76655.1); Blastp hit to AAC76655.1 (374 aa), 86% identity in aa 1 - 374" /codon_start=1 /transl_table=11 /product="glucosyltransferase I" /protein_id="NP_462622.1" /db_xref="GeneID:1255246" /translation="MRVAFCLYKYFPFGGLQRDFMRIAQTVAARGHQVRVYTQSWEGE CPDNFELIRVPVKSRTNHGRNAEYYAWVQHHLRDHPVDRVVGFNKMPGLDVYYAADVC YAEKVAQEKGFFYRLTSRYRHYAAFERATFEHGKPTQLLMLTNKQIADFQKHYQTEAE RFHILPPGIYPDRKYSQQIPNSRQIYRQKNGISEQQKLLLQVGSDFTRKGVDRSIEAL ASLPESLRQNTVLYVVGQDKPKKFAALAERSGVGTNVHFFSGRNDIAELMAAADLLLH PAYQEAAGIVLLEAITAGLPVLTTAVCGYAHYIVDANCGEAMTEPFRQDALNEVLLKA LTQPSLRNAWAENARYYADTQDLYSLPEKAADIITGDLDG" misc_feature complement(3916771..3917871) /gene="rfaG" /locus_tag="STM3722" /note="phosphatidyl-myo-inositol mannosyltransferase; Region: GT4_PimA-like; cd03801" /db_xref="CDD:340831" regulatory complement(3916764..3916769) /regulatory_class="ribosome_binding_site" /gene="rfaP" /locus_tag="STM3721" /note="putative RBS for rfaP; RegulonDB:STMS1H003695" gene complement(3917871..3918924) /gene="rfaQ" /locus_tag="STM3723" /db_xref="GeneID:1255247" CDS complement(3917871..3918905) /gene="rfaQ" /locus_tag="STM3723" /note="modification of heptose region of core; similar to E. coli lipopolysaccharide core biosynthesis (AAC76656.1); Blastp hit to AAC76656.1 (344 aa), 78% identity in aa 1 - 344" /codon_start=1 /transl_table=11 /product="lipopolysaccharide core biosynthesis protein" /protein_id="NP_462623.1" /db_xref="GeneID:1255247" /translation="MRFHGDMLLTTPVISTLKQNYPDAKIDVLLYQNTIPILSENPEI NALYGISNKGAGTKEKIKNALSLIKKLRANSYDLVVNLTDQWSVALIVRFLNAKIKIS QDFGNRQSALWKKSFTHLVPYAGEHAVERTLSALKPLALKQYVTETTMSYRPEHWENM RQQLKQLGVTRQYVVIQPTARQLFKCWDNDKFSQVIDAVQRRGYQVVLTSGPAADEMA CVDAIARGCETKPVTGLAGKTRFPELGALIDHADLFIGVDSAPGHIAAAVKTPVICLF GATDHVFWRPWTDDIIQFWAGNYQPMPERHELDRNKKYLSVIPAEDVIAATEKMLPHE ARTIDLDSLL" misc_feature complement(3917886..3918905) /gene="rfaQ" /locus_tag="STM3723" /note="lipopolysaccharide core biosynthesis protein; Provisional; Region: PRK10422" /db_xref="CDD:182447" misc_feature complement(order(3918114..3918116,3918123..3918128, 3918135..3918137,3918171..3918176,3918279..3918281, 3918375..3918380)) /gene="rfaQ" /locus_tag="STM3723" /note="putative active site [active]" /db_xref="CDD:340821" regulatory complement(3917883..3917888) /regulatory_class="ribosome_binding_site" /gene="rfaQ" /locus_tag="STM3723" /note="putative RBS for rfaG; RegulonDB:STMS1H003696" regulatory complement(3918919..3918924) /regulatory_class="ribosome_binding_site" /gene="rfaQ" /locus_tag="STM3723" /note="putative RBS for rfaQ; RegulonDB:STMS1H003697" gene 3919350..3920627 /gene="kdtA" /locus_tag="STM3724" /db_xref="GeneID:1255248" CDS 3919350..3920627 /gene="kdtA" /locus_tag="STM3724" /EC_number="2.-.-.-" /note="KDO transferase; similar to E. coli 3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase) (AAC76657.1); Blastp hit to AAC76657.1 (425 aa), 96% identity in aa 1 - 425" /codon_start=1 /transl_table=11 /product="3-deoxy-D-manno-octulosonic-acid transferase" /protein_id="NP_462624.1" /db_xref="GeneID:1255248" /translation="MLELLYTALLYLIQPLIWIRLWVRGRKAPAYRKRWGERYGFYRR PLKPGGIMLHSVSVGETLAAIPLVRALRHRYPDLPITVTTMTPTGSERVQSAFGNDVQ HVYLPYDLPDALNRFLNKIDPKLVLIMETELWPNLIAALHKRHIPLVIANARLSARSA AGYAKLGKFVRTLLRRITLIAAQNEEDGERFVALGAKNNQVTVTGSLKFDISVTPQLA AKAVTLRRQWAPHRPVWIATSTHDGEESIVIAAHQALLHQFPNLLLILVPRHPERFPD AINLVRQAGLSYITRSSGEVPSASTQVVVGDTMGELMLLYGIADLAFVGGSLVERGGH NPLEAAAHAIPVLMGPHTFNFKDICARLDQASGLITITDAATLAKEVSSLLTDADYRN FYGRHAVEVLYQNQGALQRLLQLLEPYLPPKTH" misc_feature 3919350..3920621 /gene="kdtA" /locus_tag="STM3724" /note="3-deoxy-D-manno-octulosonic-acid transferase; Reviewed; Region: PRK05749" /db_xref="CDD:235589" gene 3920626..3921115 /gene="kdtB" /locus_tag="STM3725" /db_xref="GeneID:1255249" regulatory 3920626..3920631 /regulatory_class="ribosome_binding_site" /gene="kdtB" /locus_tag="STM3725" /note="putative RBS for kdtB; RegulonDB:STMS1H003698" CDS 3920636..3921115 /gene="kdtB" /locus_tag="STM3725" /EC_number="2.7.7.3" /note="similar to E. coli putative enzyme of lipopolysaccharide synthesis (AAC76658.1); Blastp hit to AAC76658.1 (159 aa), 93% identity in aa 1 - 158" /codon_start=1 /transl_table=11 /product="phosphopantetheine adenylyltransferase" /protein_id="NP_462625.1" /db_xref="GeneID:1255249" /translation="MQKRAIYPGTFDPITNGHLDIVTRATQMFDHVILAIAASPSKKP MFTLDERVALAQKATAHLGNVEVVGFSDLMANFARDRQANILIRGLRAVADFEYEMQL AHMNRHLMPQLESVFLMPSKEWSFISSSLVKEVARHQGDVTHFLPDNVHQALMDKLK" misc_feature 3920642..3921112 /gene="kdtB" /locus_tag="STM3725" /note="Phosphopantetheine adenylyltransferase [Coenzyme transport and metabolism]; Region: CoaD; COG0669" /db_xref="CDD:440433" gene complement(3921143..3921963) /gene="mutM" /locus_tag="STM3726" /db_xref="GeneID:1255250" CDS complement(3921143..3921952) /gene="mutM" /locus_tag="STM3726" /EC_number="3.2.2.23" /note="formamidopyrimidine-DNA glycosylase. (SW:FPG_SALTY)" /codon_start=1 /transl_table=11 /product="formamidopyrimidine DNA glycosylase" /protein_id="NP_462626.1" /db_xref="GeneID:1255250" /translation="MPELPEVETSRRGIEPHLVGATILHAHIRNGRLRWPVSDEIYRL SDTPVLSVQRRAKYLLLELPDGWIIIHLGMSGSLRILPEALPAEKHDHVDLVMSNGKI LRYTDPRRFGAWLWTKELEGHNVLAHLGPEPLSDEFNGEYLQQKCAKKKTAIKPWLMD NKLVVGVGNIYASESLFAAGIHPDRLASSLSTEECDLLARVIKAVLLRSIEQGGTTLK DFLQSDGKPGYFAQELQVYGRKGEPCRVCGTPIVATKHAQRATFYCRHCQK" misc_feature complement(3921146..3921952) /gene="mutM" /locus_tag="STM3726" /note="bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase; Region: PRK01103" /db_xref="CDD:234899" regulatory complement(3921958..3921963) /regulatory_class="ribosome_binding_site" /gene="mutM" /locus_tag="STM3726" /note="putative RBS for mutM; RegulonDB:STMS1H003699" gene complement(3922050..3922230) /gene="rpmG" /locus_tag="STM3727" /db_xref="GeneID:1255251" CDS complement(3922050..3922217) /gene="rpmG" /locus_tag="STM3727" /note="50S ribosomal protein L33. (SW:RL33_ECOLI)" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L33" /protein_id="NP_462627.1" /db_xref="GeneID:1255251" /translation="MAKGIREKIKLVSSAGTGHFYTTTKNKRTKPEKLELKKFDPVVR QHVIYKEAKIK" misc_feature complement(3922059..3922217) /gene="rpmG" /locus_tag="STM3727" /note="50S ribosomal protein L33; Validated; Region: rpmG; PRK00595" /db_xref="CDD:179075" regulatory complement(3922225..3922230) /regulatory_class="ribosome_binding_site" /gene="rpmG" /locus_tag="STM3727" /note="putative RBS for rpmG; RegulonDB:STMS1H003700" gene complement(3922238..3922487) /gene="rpmB" /locus_tag="STM3728" /db_xref="GeneID:1255252" CDS complement(3922238..3922474) /gene="rpmB" /locus_tag="STM3728" /note="50S ribosomal protein L28. (SW:RL28_SALTY)" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L28" /protein_id="NP_462628.1" /db_xref="GeneID:1255252" /translation="MSRVCQVTGKRPVTGNNRSHALNATKRRFLPNLHSHRFWVESEK RFVTLRVSAKGMRIIDKKGIETVLSELRARGEKY" misc_feature complement(3922286..3922474) /gene="rpmB" /locus_tag="STM3728" /note="Ribosomal protein L28 [Translation, ribosomal structure and biogenesis]; Region: RpmB; COG0227" /db_xref="CDD:439997" regulatory complement(3922482..3922487) /regulatory_class="ribosome_binding_site" /gene="rpmB" /locus_tag="STM3728" /note="putative RBS for rpmB; RegulonDB:STMS1H003701" gene complement(3922692..3923371) /gene="radC" /locus_tag="STM3729" /db_xref="GeneID:1255253" CDS complement(3922692..3923357) /gene="radC" /locus_tag="STM3729" /note="associated with replication forks; similar to E. coli DNA repair protein (AAC76662.1); Blastp hit to AAC76662.1 (224 aa), 83% identity in aa 10 - 224" /codon_start=1 /transl_table=11 /product="putative DNA repair protein" /protein_id="NP_462629.1" /db_xref="GeneID:1255253" /translation="MDTLDELLPREKMLRSGIASLSDVELLALFLRTGTPGKDVMTLA KEILQHFGSLYGLLSADFAQFRGVNGIGLAKFAQLKGIAELARRYYSVRMNEESALLS PEMTREFLQSQLTGEEREIFLVIFLDAQHRVLQHSRLFSGTLNHVEVHPREIVREAIK LNASAVILAHNHPSGCAEPSKADKLITERVIKCCQFMDIRVLDHLIIGRGEYVSFAER GWI" misc_feature complement(3922695..3923357) /gene="radC" /locus_tag="STM3729" /note="DNA repair protein RadC; Region: PRK00024" /db_xref="CDD:178801" regulatory complement(3923366..3923371) /regulatory_class="ribosome_binding_site" /gene="radC" /locus_tag="STM3729" /note="putative RBS for radC; RegulonDB:STMS1H003702" gene 3923520..3924753 /gene="dfp" /locus_tag="STM3730" /db_xref="GeneID:1255254" regulatory 3923520..3923525 /regulatory_class="ribosome_binding_site" /gene="dfp" /locus_tag="STM3730" /note="putative RBS for dfp; RegulonDB:STMS1H003703" CDS 3923530..3924753 /gene="dfp" /locus_tag="STM3730" /note="affecting synthesis of DNA and pantothenate metabolism; similar to E. coli flavoprotein affecting synthesis of DNA and pantothenate metabolism (AAC76663.1); Blastp hit to AAC76663.1 (430 aa), 92% identity in aa 24 - 430" /codon_start=1 /transl_table=11 /product="flavoprotein" /protein_id="NP_462630.3" /db_xref="GeneID:1255254" /translation="MMSLAGKKIVLGVSGGIAAYKTPELVRRLREHGADVRVAMTEAA KAFITPLSLQAVSGYPVSDSLLDPAAEAAMGHIELGKWADLVILAPATADLIARVASG MANDLVSTICLATPAPVAVLPAMNQQMYRAAATQHNLEVLASRGLFIWGPDSGSQACG DVGPGRMLDPLVIVDKAAAHFAAVNDLRHLNIMITAGPTREPLDPVRYISNHSSGKMG FAIAAAAARRGANVTLVSGPVSLPTPPFVKRVDVITALDMEAAVQAAVQQQHIFISCA AVADYRAETIASEKIKKQAAQGDELLIKMVKNPDIVAGVAALSDNRPYVVGFAAETNN VEEYARQKRIRKNLDLICANDVSLSNQGFNSDKNALHLFWQDGDKVLPLERKELLGQL LLDEIVTRYDEKNRR" misc_feature 3923530..3924738 /gene="dfp" /locus_tag="STM3730" /note="bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated; Region: PRK05579" /db_xref="CDD:235513" gene 3924734..3925189 /gene="dut" /locus_tag="STM3731" /db_xref="GeneID:1255255" CDS 3924734..3925189 /gene="dut" /locus_tag="STM3731" /EC_number="3.6.1.23" /note="similar to E. coli deoxyuridinetriphosphatase (AAC76664.1); Blastp hit to AAC76664.1 (151 aa), 92% identity in aa 1 - 151" /codon_start=1 /transl_table=11 /product="deoxyuridinetriphosphatase" /protein_id="NP_462631.1" /db_xref="GeneID:1255255" /translation="MKKIDVKILDPRVGQQFPLPTYATSGSAGLDLRACLDDAVELAP GATTLVPTGLAIHIADPSLAAVMLPRSGLGHKHGIVLGNLVGLIDSDYQGQLMVSIWN RGQDSFTIEPGERIAQMVFVPVVQAEFNLVEAFDATERGEGGFGHSGRK" misc_feature 3924734..3925186 /gene="dut" /locus_tag="STM3731" /note="dUTP diphosphatase; Region: dut; PRK00601" /db_xref="CDD:234802" misc_feature order(3924815..3924820,3924854..3924856,3924869..3924874, 3924878..3924880,3924929..3924931,3924935..3924952, 3924968..3924976,3924992..3924994,3925001..3925003, 3925022..3925024,3925028..3925030,3925034..3925036, 3925040..3925042,3925052..3925066,3925073..3925075, 3925085..3925087) /gene="dut" /locus_tag="STM3731" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:143638" misc_feature order(3924941..3924949,3924992..3925000,3925007..3925009, 3925019..3925024) /gene="dut" /locus_tag="STM3731" /note="active site" /db_xref="CDD:143638" gene 3925280..3925893 /gene="ttk" /locus_tag="STM3732" /db_xref="GeneID:1255256" regulatory 3925280..3925285 /regulatory_class="ribosome_binding_site" /gene="ttk" /locus_tag="STM3732" /note="putative RBS for ttk; RegulonDB:STMS1H003704" CDS 3925297..3925893 /gene="ttk" /locus_tag="STM3732" /note="similar to E. coli putative transcriptional regulator (AAC76665.1); Blastp hit to AAC76665.1 (212 aa), 96% identity in aa 15 - 212" /codon_start=1 /transl_table=11 /product="putative TetR/ArcR family transcriptional regulator" /protein_id="NP_462632.1" /db_xref="GeneID:1255256" /translation="MAEKQTAKRNRREEILQSLALMLESSDGSQRITTAKLAASVGVS EAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKNTSTRLRLIVLLILGFGERN PGLTRILTGHALMFEQDRLQGRINQLFERIEAQLRQVLREKRMREGEGYTTDENLLAS QLLAFCEGMLSRFVRSEFKYRPTDDFDARWPLIAAQLQ" misc_feature 3925297..3925881 /gene="ttk" /locus_tag="STM3732" /note="division inhibitor protein; Provisional; Region: slmA; PRK09480" /db_xref="CDD:181894" gene complement(3925971..3926625) /gene="pyrE" /locus_tag="STM3733" /db_xref="GeneID:1255257" CDS complement(3925971..3926612) /gene="pyrE" /locus_tag="STM3733" /EC_number="2.4.2.10" /note="orotate phosphoribosyltransferase. (SW:PYRE_SALTY)" /codon_start=1 /transl_table=11 /product="orotate phosphoribosyltransferase" /protein_id="NP_462633.1" /db_xref="GeneID:1255257" /translation="MKPYQRQFIEFALNKQVLKFGEFTLKSGRKSPYFFNAGLFNTGR DLALLGRFYAEALVDSGIEFDLLFGPAYKGIPIATTTAVALAEHHDKDLPYCFNRKEA KDHGEGGSLVGSALQGRVMLVDDVITAGTAIRESMEIIQAHGATLAGVLISLDRQERG RGEISAIQEVERDYGCKVISIITLKDLIAYLEEKPDMAEHLAAVRAYREEFGV" misc_feature complement(3925974..3926612) /gene="pyrE" /locus_tag="STM3733" /note="orotate phosphoribosyltransferase; Validated; Region: pyrE; PRK00455" /db_xref="CDD:234771" misc_feature complement(order(3926145..3926147,3926217..3926231, 3926235..3926243,3926394..3926396,3926400..3926402)) /gene="pyrE" /locus_tag="STM3733" /note="active site" /db_xref="CDD:206754" regulatory complement(3926620..3926625) /regulatory_class="ribosome_binding_site" /gene="pyrE" /locus_tag="STM3733" /note="putative RBS for pyrE; RegulonDB:STMS1H003705" gene complement(3926691..3927421) /gene="rph" /locus_tag="STM3734" /db_xref="GeneID:1255258" CDS complement(3926691..3927407) /gene="rph" /locus_tag="STM3734" /EC_number="2.7.7.56" /note="ribonuclease PH. (SW:RNPH_SALTY)" /codon_start=1 /transl_table=11 /product="RNase PH" /protein_id="NP_462634.1" /db_xref="GeneID:1255258" /translation="MRPAGRSANQVRPVTLTRNYTKHAEGSVLVEFGDTKVLCTASIE EGVPRFLKGQGQGWITAEYGMLPRATHTRNAREAAKGKQGGRTMEIQRLIARALRAAV DLKTLGEFTITLDCDVIQADGGTRTASITGACVALADALNKLVANGKLKTNPMKGMVA AVSVGIVNGEAICDLEYVEDSAAETDMNVVMTEDGRIIEVQGTAEGEPFSHEELLTLL ALARGGIESIVATQKAALEN" misc_feature complement(3926697..3927407) /gene="rph" /locus_tag="STM3734" /note="Ribonuclease PH [Translation, ribosomal structure and biogenesis]; Region: Rph; COG0689" /db_xref="CDD:440453" regulatory complement(3927416..3927421) /regulatory_class="ribosome_binding_site" /gene="rph" /locus_tag="STM3734" /note="putative RBS for rph; RegulonDB:STMS1H003706" gene 3927521..3928396 /gene="yicC" /locus_tag="STM3735" /db_xref="GeneID:1255259" regulatory 3927521..3927526 /regulatory_class="ribosome_binding_site" /gene="yicC" /locus_tag="STM3735" /note="putative RBS for yicC; RegulonDB:STMS1H003707" CDS 3927533..3928396 /gene="yicC" /locus_tag="STM3735" /note="similar to E. coli putative alpha helix protein (AAC76668.1); Blastp hit to AAC76668.1 (287 aa), 96% identity in aa 1 - 287" /codon_start=1 /transl_table=11 /product="putative stress-induced protein" /protein_id="NP_462635.1" /db_xref="GeneID:1255259" /translation="MIRSMTAYARREIKGEWGSATWEMRSVNQRYLETYFRLPEQFRS LEPVVRERIRTRLTRGKVECMLRFEPDASAQGELILNEKLAKQLVSAANWVKMQSDEG EINPVDILRWPGVMAAQEQDLDAIAAEILAALDGTLDDFIVARETEGQALKALIEQRL EGVSAEVAKVRAHMPEILQWQRERLVAKLEDAQVQLENNRLEQELVMMAQRIDVAEEL DRLEAHVKETYNILKKKEAVGRRLDFMMQEFNRESNTLASKSINADVTNSAIELKVLI EQMREQIQNIE" misc_feature 3927533..3928393 /gene="yicC" /locus_tag="STM3735" /note="TIGR00255 family protein; Region: TIGR00255" /db_xref="CDD:129357" gene complement(3928446..3929351) /locus_tag="STM3736" /db_xref="GeneID:1255260" CDS complement(3928446..3929348) /locus_tag="STM3736" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73730.1); Blastp hit to AAC73730.1 (266 aa), 25% identity in aa 2 - 219" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462636.1" /db_xref="GeneID:1255260" /translation="MNLLQMDMNLLKVLYVLLETSSTGKTAQKLALSPSAVSHALMRL RDALNDPLFRREGNRQIPTPYAQALRDKLAPVFVSLNEELFGDKENGSRCFRVVLPPA LNALLTPVLAEKGHLHQAVIECLPFARRPWRDELLDSSVDLVLAIGDHQKQVSALHYE RVGTTRLIAVYGAPLRSRLENATALNFADLQHYQHIYCLPWTKENNELDRQQARAGFE RPLAFVCHDYSQLAPAVQSAPLMAIVPRPWYENLSDKRGLFVLPLAGEQAEGAIFMQY RASTVEWKRRLIDAIRRKLKTYYR" misc_feature complement(<3928839..3929333) /locus_tag="STM3736" /note="DNA-binding transcriptional regulator, LysR family [Transcription]; Region: LysR; COG0583" /db_xref="CDD:440348" misc_feature complement(3928485..3929069) /locus_tag="STM3736" /note="Type 2 periplasmic binding fold superfamily; Region: Periplasmic_Binding_Protein_Type_2; cl21456" /db_xref="CDD:473866" misc_feature complement(order(3928638..3928643,3928647..3928652, 3928668..3928685,3928971..3928991,3928995..3928997, 3929010..3929015,3929019..3929024)) /locus_tag="STM3736" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176109" regulatory complement(3929346..3929351) /regulatory_class="ribosome_binding_site" /locus_tag="STM3736" /note="putative RBS for STM3736; RegulonDB:STMS1H003708" gene 3929414..3930303 /locus_tag="STM3737" /db_xref="GeneID:1255261" regulatory 3929414..3929419 /regulatory_class="ribosome_binding_site" /locus_tag="STM3737" /note="putative RBS for STM3737; RegulonDB:STMS1H003709" CDS 3929422..3930303 /locus_tag="STM3737" /note="including glyoxylases; similar to E. coli orf, hypothetical protein (AAC74013.1); Blastp hit to AAC74013.1 (215 aa), 28% identity in aa 28 - 135" /codon_start=1 /transl_table=11 /product="putative Zn-dependent hydrolase" /protein_id="NP_462637.1" /db_xref="GeneID:1255261" /translation="MNRYALFLVCIFSTSALPAMAALDPSQPLSPAPPLSLFKAWAKP IKPFQITEGVWYVGTKNLSSILLTTPAGHILIDAGLDESAPQIKANIEAAGFRLTDVR YLLNSHARLDQAGGMARLKAWSGAQLVASQPNADQMARGGRQDFALGDALPFPPVTTD KIIHHQESIILGGITVTALFTPGHLPGSTSWRVTLRNGKTLIYADSLATPDYLLINNK NYPDLVTDIQSSFKTLAAQHVDIFIANKGDRFGLLEKRQQLRNGDTQAFFDSNGLQQY VERSRQRFITQLTAQQP" misc_feature 3929542..3930285 /locus_tag="STM3737" /note="mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain; Region: metallo-hydrolase-like_MBL-fold; cl23716" /db_xref="CDD:451500" misc_feature order(3929743..3929745,3929749..3929751,3929755..3929760, 3929971..3929976,3930037..3930039,3930157..3930159) /locus_tag="STM3737" /note="active site" /db_xref="CDD:293846" gene 3930542..3931171 /gene="yigC" /locus_tag="STM3738" /db_xref="GeneID:1255262" regulatory 3930542..3930547 /regulatory_class="ribosome_binding_site" /gene="yigC" /locus_tag="STM3738" /note="putative RBS for yigC; RegulonDB:STMS1H003710" CDS 3930554..3931171 /gene="yigC" /locus_tag="STM3738" /note="similar to E. coli orf, hypothetical protein (AAC76670.1); Blastp hit to AAC76670.1 (223 aa), 94% identity in aa 19 - 223" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462638.1" /db_xref="GeneID:1255262" /translation="MLLHVLYLIGITAEAMTGALAAGRRRMDTFGVIIIATATAIGGG SVRDILLGHYPLGWVKHPEYVIIVATAAVLTTIVAPVMPYLRKLFLVLDALGLVVFSI IGAQIALDMGEGPIIAVVAAVTTGVFGGVLRDMFCKRIPLVFQKELYAGISFASAVLY IALQHYVMNPDVVVISTLLFGFTARLLALRLKLGLPVFYYRHEGH" misc_feature 3930554..3931102 /gene="yigC" /locus_tag="STM3738" /note="Uncharacterized membrane protein YeiH [Function unknown]; Region: YadS; COG2860" /db_xref="CDD:442107" gene complement(3931168..3932865) /gene="yicF" /locus_tag="STM3739" /db_xref="GeneID:1255263" CDS complement(3931168..3932853) /gene="yicF" /locus_tag="STM3739" /note="similar to E. coli putative enzyme (AAC76671.1); Blastp hit to AAC76671.1 (562 aa), 69% identity in aa 3 - 560" /codon_start=1 /transl_table=11 /product="putative DNA ligase" /protein_id="NP_462639.1" /db_xref="GeneID:1255263" /translation="MRLWKSMAWGILLWHSQSGALCPAWPPARAAEEIARLQQQLADW NDIYWKQGVSAVDDSVYDQLSARLVQWQRCVGQDVSSTPVSPPLNGTTMHPVAHTGVR KLVDRQAVEQWMRGRSELWVQPKVDGVAVTLVYQNGKLTRAISRGNGLQGEDWTPKIR LIPSIPQTTQGALANAVLQGEIFLQREGHIQQRMGGMNARSKVAGMLMRQDNASALNS LGIFIWAWPDGPANMPERLSQLAKAGFSLTNKYTLAVKDASEVERARQSWLTSALPFV TDGVVIRMAKEPASQHWRPGQGDWLAAWKYPPVAQVAQVSAIQFSVGKSGKITVVASL VPVILDDKRVQRVNIGSVKRWEAWDIAPGDQILVSLAGQGIPRLDEVVWRSRERSKPV PPDSHFNSLTCFYASATCQEQFISRLIWLGSRSALGLDGMGEASWRALHQTHRFEHIF SWLTLTSAQIANTPGFAKGKSEQIWRQFNLARRQPFTRWIMAMDIPLTQAALQASGDR SWEQLLMRTEQHWRQLPATGERRAGRVIDWRNNLQIKALSRWLAAQHIPGFGS" misc_feature complement(3931171..3932853) /gene="yicF" /locus_tag="STM3739" /note="NAD-dependent DNA ligase LigB; Region: ligB; PRK08097" /db_xref="CDD:236150" regulatory complement(3932860..3932865) /regulatory_class="ribosome_binding_site" /gene="yicF" /locus_tag="STM3739" /note="putative RBS for yicF; RegulonDB:STMS1H003711" gene 3933094..3933733 /gene="gmk" /locus_tag="STM3740" /db_xref="GeneID:1255264" regulatory 3933094..3933099 /regulatory_class="ribosome_binding_site" /gene="gmk" /locus_tag="STM3740" /note="putative RBS for gmk; RegulonDB:STMS1H003712" CDS 3933110..3933733 /gene="gmk" /locus_tag="STM3740" /EC_number="2.7.4.8" /note="similar to E. coli guanylate kinase (AAC76672.1); Blastp hit to AAC76672.1 (207 aa), 95% identity in aa 1 - 207" /codon_start=1 /transl_table=11 /product="guanylate kinase" /protein_id="NP_462640.1" /db_xref="GeneID:1255264" /translation="MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRAP RPGEVHGEHYFFVNHDEFKTMIGREAFLEHAEVFGNYYGTSRETIEQVLATGVDVFLD IDWQGAQQIREKMPQARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY AEYDYLIVNDDFDTALSDLKTIIRAERLRMSRQKQRHNALISKLLAD" misc_feature 3933110..3933727 /gene="gmk" /locus_tag="STM3740" /note="guanylate kinase; Provisional; Region: gmk; PRK00300" /db_xref="CDD:234719" misc_feature order(3933140..3933142,3933158..3933160,3933212..3933214, 3933233..3933235,3933242..3933244,3933269..3933271, 3933338..3933340,3933353..3933355) /gene="gmk" /locus_tag="STM3740" /note="catalytic site [active]" /db_xref="CDD:238026" misc_feature order(3933140..3933142,3933158..3933160) /gene="gmk" /locus_tag="STM3740" /note="G-X2-G-X-G-K; other site" /db_xref="CDD:238026" gene 3933772..3934063 /gene="rpoZ" /locus_tag="STM3741" /db_xref="GeneID:1255265" regulatory 3933772..3933777 /regulatory_class="ribosome_binding_site" /gene="rpoZ" /locus_tag="STM3741" /note="putative RBS for rpoZ; RegulonDB:STMS1H003713" CDS 3933788..3934063 /gene="rpoZ" /locus_tag="STM3741" /EC_number="2.7.7.6" /note="similar to E. coli RNA polymerase, omega subunit (AAC76673.1); Blastp hit to AAC76673.1 (91 aa), 100% identity in aa 1 - 91" /codon_start=1 /transl_table=11 /product="RNA polymerase, omega subunit" /protein_id="NP_462641.1" /db_xref="GeneID:1255265" /translation="MARVTVQDAVEKIGNRFDLVLVAARRARQMQVGGKDPLVPEEND KTTVIALREIEEGLINNQILDVRERQEQQEQEAAELQAVTAIAEGRR" misc_feature 3933788..3933967 /gene="rpoZ" /locus_tag="STM3741" /note="DNA-directed RNA polymerase, omega subunit; Region: rpoZ; TIGR00690" /db_xref="CDD:188073" gene 3934071..3936193 /gene="spoT" /locus_tag="STM3742" /db_xref="GeneID:1255266" regulatory 3934071..3934076 /regulatory_class="ribosome_binding_site" /gene="spoT" /locus_tag="STM3742" /note="putative RBS for spoT; RegulonDB:STMS1H003714" CDS 3934082..3936193 /gene="spoT" /locus_tag="STM3742" /EC_number="3.1.7.2" /note="bifunctional; similar to E. coli (p)ppGpp synthetase II; also guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase (AAC76674.1); Blastp hit to AAC76674.1 (702 aa), 98% identity in aa 1 - 702" /codon_start=1 /transl_table=11 /product="(p)ppGpp synthetase II" /protein_id="NP_462642.1" /db_xref="GeneID:1255266" /translation="MYLFESLNQLIQTYLPEDQIKRLRQAYLVARDAHEGQTRSSGEP YITHPVAVACILAEMKLDYETLMAALLHDVIEDTPATYQDMEQLFGKSVAELVEGVSK LDKLKFRDKKEAQAENFRKMIMAMVQDIRVILIKLADRTHNMRTLGSLRPDKRRRIAR ETLEIYSPLAHRLGIHHIKTELEELGFEALYPNRYRVIKEVVKAARGNRKEMIQKILS EIEGRLQEAGIPCRVSGREKHLYSIYCKMVLKEQRFHSIMDIYAFRVIVHDSDTCYRV LGQMHSLYKPRPGRVKDYIAIPKANGYQSLHTSMIGPHGVPVEVQIRTEDMDQMAEMG VAAHWAYKEHGETSTTAQIRAQRWMQSLLELQQSAGSSFEFIESVKSDLFPDEIYVFT PEGRIVELPAGATPVDFAYAVHTDIGHACVGARVDRQPYPLSQPLSSGQTVEIITAPG ARPNAAWLNFVVSSKARAKIRQLLKNLKRDDSVSLGRRLLNHALGGSRKLAEIPQENI QRELDRMKLATLDDLLAEIGLGNAMSVVVAKNLQQGEAVVPTVAQSNHGHLPIKGADG VLITFAKCCRPIPGDPIIAHVSPGKGLVIHHESCRNIRGYQKEPEKFMAVEWDKETEQ EFITEIKVEMFNHQGALANLTAAINTTTSNIQSLNTEEKDGRVYSTFIRLTARDRVHL ANIMRKIRVMPDVIKVTRNRN" misc_feature 3934082..3936190 /gene="spoT" /locus_tag="STM3742" /note="bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Region: PRK11092" /db_xref="CDD:236843" gene 3936198..3936887 /gene="spoU" /locus_tag="STM3743" /db_xref="GeneID:1255267" CDS 3936198..3936887 /gene="spoU" /locus_tag="STM3743" /EC_number="2.1.1.34" /note="similar to E. coli putative RNA methylase (AAC76675.1); Blastp hit to AAC76675.1 (229 aa), 96% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="putative tRNA/rRNA methyltransferase" /protein_id="NP_462643.1" /db_xref="GeneID:1255267" /translation="MNPKRYARICEMLARRQPDLTVCMEQVHKPHNVSAIIRTADAVG VHEVHAIWPGSRMRTMASAAAGSNSWVQVKTHRTIGDAVAHLKSRGMQILATHLSDKA VDFREIDYTRPTCILMGQEKTGITQEALALADRDIIIPMIGMVQSLNVSVASALILYE AQRQRQNAGMYLRENSMLPEDEQQRLLFEGGYPVLAKVAKRKGLPYPRVNQQGEIDAD ADWWATMQAAG" misc_feature 3936198..3936881 /gene="spoU" /locus_tag="STM3743" /note="tRNA guanosine-2'-O-methyltransferase; Provisional; Region: PRK11081" /db_xref="CDD:236837" misc_feature order(3936483..3936485,3936489..3936491,3936549..3936560, 3936567..3936569,3936609..3936614,3936618..3936620, 3936636..3936641,3936645..3936647,3936654..3936656) /gene="spoU" /locus_tag="STM3743" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:349965" gene 3936873..3938974 /gene="recG" /locus_tag="STM3744" /db_xref="GeneID:1255268" regulatory 3936873..3936878 /regulatory_class="ribosome_binding_site" /gene="spoU" /locus_tag="STM3743" /note="putative RBS for recG; RegulonDB:STMS1H003715" CDS 3936893..3938974 /gene="recG" /locus_tag="STM3744" /EC_number="3.6.1.-" /note="resolution of Holliday junctions; branch migration; similar to E. coli DNA helicase, resolution of Holliday junctions, branch migration (AAC76676.1); Blastp hit to AAC76676.1 (693 aa), 94% identity in aa 1 - 693" /codon_start=1 /transl_table=11 /product="DNA helicase" /protein_id="NP_462644.1" /db_xref="GeneID:1255268" /translation="MSGRLLDAVPLNSLTGVGAAQSSKLAKIGLHTVQDLLLHLPLRY EDRTHLYPIGELLPGIYATVEGEVLNCNITFGGRRMMTCQISDGSGILTMRFFNFNAA MKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRLQGDLSTPELQETLTPVYPTTEGVKQ ATLRKLTDQALELLDTCAIAELLPPELAQGMMSLPEALRTLHRPPPTLQLADLETGKH PAQRRLILEELLAHNLSMLALRAGAQRYHAQPLSTNNILKDKLLASLPFKPTSAQARV VAEIERDMALDVPMMRLVQGDVGSGKTLVAALAALRAIAHGKQVALMAPTELLAEQHA NNFRNWFEPLGVEVGWLAGKQKGKARQAQQEAIASGQVQMIVGTHAIFQEQVQFNGLA LVIIDEQHRFGVHQRLALWEKGQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDE LPPGRTPVTTVAIPDTRRHEIIDRVRNACTTEGRQAYWVCTLIEESDLLEAQAAEATW EELKLALPELNIGLVHGRMKPAEKQAVMQAFKQGELHLLVATTVIEVGVDVPNASLMI IENPERLGLAQLHQLRGRVGRGAVASHCVLLYKSPLSKTAQKRLQVLRDSNDGFVIAQ KDLEIRGPGELLGTRQTGNAEFKVADLLRDQAMIPEVQRIARHIHERYPQQAQALIER WMPETERYSNA" misc_feature 3936893..3938971 /gene="recG" /locus_tag="STM3744" /note="ATP-dependent DNA helicase RecG; Provisional; Region: PRK10917" /db_xref="CDD:236794" gene complement(3938977..3939834) /locus_tag="STM3745" /db_xref="GeneID:1255269" CDS complement(3938977..3939828) /locus_tag="STM3745" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462645.1" /db_xref="GeneID:1255269" /translation="MKKRCRQPETLRERCRHIFGDEPPVLNVWEAEFDYADAELQALA ATDWRQITDWHLSVYYVLNLVYHEPMQPELFRYLFPLCLACWRETLLTHGYGDHFEES FLRALRRPYLWREMMDAAQRQQVRHFLLETMLARINHERGFNSPLTWLDTFNVLGGIA PFIRSLWNQWWLLDTPGKAVCALQYAAHLIYPVEVNPLWPEGSWQWQPPLGATEEPWL ENNLAFLTRQLTSEMILDGVQKAAEMLRDEPESAMATRISRDALAAQDVIAIQIEDLL LALSRGE" regulatory complement(3939829..3939834) /regulatory_class="ribosome_binding_site" /locus_tag="STM3745" /note="putative RBS for STM3745; RegulonDB:STMS1H003716" gene complement(3939831..3941048) /gene="gltS" /locus_tag="STM3746" /db_xref="GeneID:1255270" CDS complement(3939831..3941036) /gene="gltS" /locus_tag="STM3746" /note="similar to E. coli glutamate transport (AAC76677.1); Blastp hit to AAC76677.1 (401 aa), 92% identity in aa 1 - 401" /codon_start=1 /transl_table=11 /product="GltS family glutamate transport protein" /protein_id="NP_462646.1" /db_xref="GeneID:1255270" /translation="MFELDTLSTLVAATLVLLLGRKLVQSVSLLKKYTIPEPVAGGLL VAVALLVLKKSVGWEVNFDMTLRDPLMLAFFATIGLNANLASLRKGGRVVGVFLVVVV GLLLMQNAIGIGMASLLGLDPLMGLIAGSITLSGGHGTGAAWSKLFVERYGFASATEV AMACATFGLVLGGLIGGPVARYLVKHSTTPDGMPDDQAVPTAFEKPDVGRMITSLVLI ETIALIAICLTVGKIVAQLLAGTVLELPVFVCVLFVGVILSNGLALVGFYRVFERAVS VLGNVSLSLFLAMALMSLKLWELASLALPMLAILVVQTIFMALYAIFVTWRMMGKNYD AAVLAAGHCGFGLGATPTAIANMQAITDRFGPSHMAFLVVPMVGAFFIDIVNALVIKL YLMLPMFAG" misc_feature complement(3939846..3941033) /gene="gltS" /locus_tag="STM3746" /note="Sodium/glutamate symporter; Region: Glt_symporter; cl19414" /db_xref="CDD:473169" regulatory complement(3941043..3941048) /regulatory_class="ribosome_binding_site" /gene="gltS" /locus_tag="STM3746" /note="putative RBS for gltS; RegulonDB:STMS1H003717" gene 3941248..3942655 /gene="yicE" /locus_tag="STM3747" /db_xref="GeneID:1255271" regulatory 3941248..3941253 /regulatory_class="ribosome_binding_site" /gene="yicE" /locus_tag="STM3747" /note="putative RBS for yicE; RegulonDB:STMS1H003718" CDS 3941264..3942655 /gene="yicE" /locus_tag="STM3747" /note="similar to E. coli putative transport protein (AAC76678.1); Blastp hit to AAC76678.1 (463 aa), 95% identity in aa 1 - 462" /codon_start=1 /transl_table=11 /product="putative NCS2 family purine/xanthine transport protein" /protein_id="NP_462647.1" /db_xref="GeneID:1255271" /translation="MSVNAIEPADAQPVAQTQNSELIYRLEDRPPLPQTLFAACQHLL AMFVAVITPALLICQALGLPAQDTQHIISMSLFASGVASIIQIKAWGPVGSGLLSIQG TSFNFVAPLIMGGTALKTGGADVPTMMAALFGTLMLASCTEMVLSRILHLARRIITPL VSGVVVMIIGLSLIQVGLTSIGGGYAAMSDNTFGAPKNLLLAGVVLAIIILLNRQRNP YLRVASLVIAMAAGYLLAWFMGMLPENNAPVSQDILMVPTPLYYGLGIDWNLLLPLML VFMITSLETIGDITATSDVSEQPVSGPLYMKRLKGGVLANGLNSFVSAVFNTFPNSCF GQNNGVIQLTGVASRYVGFVVALMLIVLGLFPAVSGFVQHIPEPVLGGATLVMFGTIA ASGVRIVSREPLNRRAILIIALSLAVGLGVSQQPQILQFAPEWVKNLLSSGIAAGGIT AIVLNLILPPEKP" misc_feature 3941348..3942634 /gene="yicE" /locus_tag="STM3747" /note="uracil-xanthine permease; Region: ncs2; TIGR00801" /db_xref="CDD:273276" gene 3942766..3944485 /gene="yicH" /locus_tag="STM3748" /db_xref="GeneID:1255272" regulatory 3942766..3942771 /regulatory_class="ribosome_binding_site" /gene="yicH" /locus_tag="STM3748" /note="putative RBS for yicH; RegulonDB:STMS1H003719" CDS 3942776..3944485 /gene="yicH" /locus_tag="STM3748" /note="similar to E. coli orf, hypothetical protein (AAC76679.1); Blastp hit to AAC76679.1 (569 aa), 80% identity in aa 1 - 567" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462648.1" /db_xref="GeneID:1255272" /translation="MKLIGRLLLYVLIACLVVIFGFYFLLQTRWGADHVSNWVSENSG YHLTFDVMDHRFSAPSHLLLENVTFGRDGQPATLVAKTVDIGLSIRQLTAPLHVDTIL LQDGTLNISVQTAPFPFEADRLQLRNMALNSPGSEWRLSAQRVNGGVMPWRPEAGRVL GNKAQIQLSAGSLTLNDVPATNVLIEGSIDHNQVMLNTVGADMARGALTGVARRNADG SWVVENLRLNDIRLQSDKSLSEFFAPLTTVPSLQISRLEVTDSSLQGPDWAVTDLDLS LRNLTLRKEDWQSQEGKLSMNASEFIYGSLHLLDPILNAEFSPQGVALRQFTTRWEGG MVRTSGAWLREGKALILDDTAIAGLEYTLPENWKQLWMKPLPDWLNSLTLKKFSASRN LVIDIDPAFPWQITALDGYGANLELVQHHQWGVWSGNATLNAAAATFNRVDVRRPSLS LTANASTVNISDLSAFTGKGILEATASVSQLPQRQTQISLNGRGVPMDVLQQWGWPAL PIAGDGNIQLTASGNIQADAPLKPTVNGQLHAVNAQKQQITQTMQAGVVSGGEVTSTE PTL" misc_feature 3942776..3944344 /gene="yicH" /locus_tag="STM3748" /note="AsmA family; Region: AsmA; pfam05170" /db_xref="CDD:428346" gene complement(3944588..3946918) /gene="yicI" /locus_tag="STM3749" /db_xref="GeneID:1255273" CDS complement(3944588..3946906) /gene="yicI" /locus_tag="STM3749" /note="similar to E. coli orf, hypothetical protein (AAC76680.1); Blastp hit to AAC76680.1 (772 aa), 88% identity in aa 1 - 772" /codon_start=1 /transl_table=11 /product="putative alpha-xylosidase" /protein_id="NP_462649.1" /db_xref="GeneID:1255273" /translation="MKISDGNWLIQPGLNLIHPVQVFDVEQHGNEMVIYAAPRDVRER TWQLDTPLFTLRFFSPQEGVIGVRMEHFQGALDNGPHYPLNVLQDINVEMQNNAEFAE LKSGSLSVRVTKGEIWSLDFLRNGVRITGSQLKNNGYVQDTNSGRNYMFERLDLGVGD TVYGLGERFTALVRNGQTVETWNRDGGTSTEQSYKNIPFYITNRGYGVLVNHPQCVSF EIGSEKVSKVQFSVESEYLEYFVIDGPTPKDVLNRYTQFTGRPALPPAWSFGLWLTTS FTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPVTFPDPKGMIRR LKAKGLKVCVWINPYIGQKSPVFQELKEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNP QACEWYADKLKGLVEMGVDCFKTDFGERIPTDVQWFDGSDPQKMHNHYAYIYNELVWN VLKETVGVEEAVLFARSASVGAQQFPVHWGGDCYANYESMAESLRGGLSIGLSGFGFW SHDIGGFENTAPAHVYKRWCAFGLLSSHSRLHGSKSYRVPWAYDDESCDVVRFFTEQK CRMMPYLYREAARANEAGTPMMRAMMLEFPDDPACDYLDRQYMLGDAVMVAPVFSEAG DVEFYLPEGRWTHLWRNDEVQGSRWHKQQHDFLSLPVYVRDNTLLALGNNSQKPDYAW HEGTAFQLFHLDDGCEAVCEVPATDGSTIFTLQAKRTGNTITVSGEGKARNWTLCLRN ITQISGTKCGSYAGSELGVVVTPQGNEVVITL" misc_feature complement(3944909..3946906) /gene="yicI" /locus_tag="STM3749" /note="putative alpha-glucosidase; Provisional; Region: PRK10658" /db_xref="CDD:236731" regulatory complement(3946913..3946918) /regulatory_class="ribosome_binding_site" /gene="yicI" /locus_tag="STM3749" /note="putative RBS for yicI; RegulonDB:STMS1H003720" gene complement(3946918..3948311) /gene="yicJ" /locus_tag="STM3750" /db_xref="GeneID:1255274" CDS complement(3946918..3948300) /gene="yicJ" /locus_tag="STM3750" /note="similar to E. coli putative permease (AAC76681.1); Blastp hit to AAC76681.1 (479 aa), 91% identity in aa 20 - 479" /codon_start=1 /transl_table=11 /product="putative GPH family transport protein" /protein_id="NP_462650.1" /db_xref="GeneID:1255274" /translation="MKSEILSVKEKIGYGMGDAASHIIFDNVMLYMMFFYTDIFGIPA GFVGTMFLLARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYSTPD LSLNGKMIYAAITYTLLTLLYTVVNIPYCALGGVITNDPTQRISLQSWRFVLATAGGM LSTVLMMPLVKLIGGENKALGFQGGIAALSVVAFLMLAFCFFTTKERVEAPATHTSMR EDLRDIWHNDQWRIVGLLTILNILAVCVRGGAMMYYVTWILGKPGVFVAFLTTYCVGN LIGSALAKPLTDWKCKVSVFWWTNALLAVISVAMFFVPMHATIAMFVFIFVIGVLHQL VTPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLALGGALIGWMLAGGGYDA AAKTQNSATISIIIALFTIVPAICYLLSAAIAKRYYTLKSPFLKTILEQLAQGAHRNE QEFTHKELQN" misc_feature complement(3946921..3948300) /gene="yicJ" /locus_tag="STM3750" /note="putative transporter; Provisional; Region: PRK11462" /db_xref="CDD:183145" misc_feature complement(order(3947179..3947181,3947188..3947193, 3947200..3947205,3947212..3947214,3947281..3947283, 3947293..3947295,3947305..3947310,3947458..3947460, 3947470..3947472,3947554..3947556,3947563..3947571, 3947578..3947583,3947590..3947592,3947824..3947826, 3947833..3947838,3947845..3947847,3947908..3947910, 3947917..3947925,3947929..3947934,3948115..3948117, 3948214..3948216,3948223..3948228,3948235..3948240)) /gene="yicJ" /locus_tag="STM3750" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340890" regulatory complement(3948306..3948311) /regulatory_class="ribosome_binding_site" /gene="yicJ" /locus_tag="STM3750" /note="putative RBS for yicJ; RegulonDB:STMS1H003721" gene 3948588..3948678 /gene="selC" /locus_tag="STM3751" /db_xref="GeneID:1255275" tRNA 3948588..3948678 /gene="selC" /locus_tag="STM3751" /product="tRNA-OTHER" /db_xref="GeneID:1255275" gene complement(3948999..3949347) /locus_tag="STM3752" /db_xref="GeneID:1255276" CDS complement(3948999..3949343) /locus_tag="STM3752" /note="Pathogenicity island encoded protein: SPI3" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462651.1" /db_xref="GeneID:1255276" /translation="MSYKYVGKHGCDVALRMGYKECPDENAYGDAYYIKDGLKWIFNI TGLKKRLGVYSDDDLRKQNYDVDTYYRVENQPEESADDEMQSLYHNLAVEEGEPVYLE GGMYLYPDGSIR" regulatory complement(3949342..3949347) /regulatory_class="ribosome_binding_site" /locus_tag="STM3752" /note="putative RBS for STM3752; RegulonDB:STMS1H003723" gene 3950014..3951211 /gene="sugR" /locus_tag="STM3753" /db_xref="GeneID:1255277" regulatory 3950014..3950019 /regulatory_class="ribosome_binding_site" /gene="sugR" /locus_tag="STM3753" /note="putative RBS for sugR; RegulonDB:STMS1H003724" CDS 3950021..3951211 /gene="sugR" /locus_tag="STM3753" /note="putative cytoplasmic protein; Pathogenicity island encoded protein: SPI3; putative ATP binding protein SugR (gi|4324607)" /codon_start=1 /transl_table=11 /product="ATP binding protein" /protein_id="NP_462652.1" /db_xref="GeneID:1255277" /translation="MRIDKLSLLNFRCFRQLDITFDEHITILVAPNGAGKTTVLDAIR LALFPFIRGFDASLYVKDKSLAIRTEDVRLVFRPEALNMEMSSPAMITATGEWESGKT ATWMLDKRGEQPPHEDKTAAQLTRWGEQLQTLVREEHNLQQVELPLMLYLGTARLWYQ ERYEAQPTEQRLDNSAFSRLSGYDDCLSATSNYKQFEQWYSWLWLSYREHQITQLESP SAKLKEGVRVQRMKEAIQAIQQAINCLTQEVTGWHDLEYSSSHNQQLVMNHPQHGKIP LSQLSDGLRNAVAMVADIAFRCVKLNPHLRDEAALKTQGIVLIDEVDMFLHPAWQQQI IQSLRSAFPLIQFIVTTHSPQVISTVKRESVRLLEQDEKGNGLASIPAGRPTASQVMM YCTA" misc_feature 3950021..3951136 /gene="sugR" /locus_tag="STM3753" /note="Predicted ATP-binding protein involved in virulence [General function prediction only]; Region: COG3950" /db_xref="CDD:443150" gene 3951208..3951558 /locus_tag="STM3754" /db_xref="GeneID:1255278" CDS 3951208..3951558 /locus_tag="STM3754" /note="Pathogenicity island encoded protein: SPI3; putative ATP binding protein SugR (gi|4324607)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462653.1" /db_xref="GeneID:1255278" /translation="MMGVDPQPPVKEQDVFERGIINVFKGLSQEYKTNNPCYFGKKII VNNLVKHDRWGYSLNWGWRRDQLADLERILYLLDSKTIPDNRHDVSIRFMDFVRDNPR EQVFEDDMFTIRYF" misc_feature <3951244..3951555 /locus_tag="STM3754" /note="Domain of unknown function (DUF4942); Region: DUF4942; pfam13708" /db_xref="CDD:433419" gene 3951739..3952782 /gene="rhuM" /locus_tag="STM3755" /db_xref="GeneID:1255279" regulatory 3951739..3951744 /regulatory_class="ribosome_binding_site" /gene="rhuM" /locus_tag="STM3755" /note="putative RBS for rhuM; RegulonDB:STMS1H003725" CDS 3951745..3952782 /gene="rhuM" /locus_tag="STM3755" /note="Pathogenicity island encoded protein: SPI3; RhuM (gi|4324608)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462654.1" /db_xref="GeneID:1255279" /translation="MADKYLTQSPAGEFVMFASDDGEVRVECRFEQETLWLPQATIAN LYQITPQAVTQHIKAIYEEGELEQNATCKSYLQVQQEGSRQVSRNRLHYSLPVILAVG YRVRSPRGTQFRQWATQTLQKYLIKGFVMDDERLKNPPVGSSAVPDYFDEMLERIRDI RASERRVYLRVREIFALAADYQPSLKETTQFFQTIQNKLHFACTGHTAAELIHQRADA SQPHMGLTSYKGEEVRKDDVTVAKNYLTQDEVSELNRVVNMWLDFAEDQARRRQQIFL RDWQDKLDQFLQFNDREVLQGAGKVTKKMADEKAQAEYSQFAEQQRRLKEAEGEKDIA GLLQWETEPKK" misc_feature 3951952..3952719 /gene="rhuM" /locus_tag="STM3755" /note="Virulence protein RhuM family; Region: Virulence_RhuM; pfam13310" /db_xref="CDD:463842" gene 3954066..3954698 /gene="rmbA" /locus_tag="STM3756" /db_xref="GeneID:1255280" regulatory 3954066..3954071 /regulatory_class="ribosome_binding_site" /gene="rmbA" /locus_tag="STM3756" /note="putative RBS for rmbA; RegulonDB:STMS1H003726" CDS 3954081..3954698 /gene="rmbA" /locus_tag="STM3756" /note="Pathogenicity island encoded protein: SPI3; RmbA (gi|4324609)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462655.1" /db_xref="GeneID:1255280" /translation="MMRKPSQIVHCISCDLSCQLFPDSAVRVQYCHNAAFSIWPDGNA FLKKGFIEKLLLDRHNHLSSGFIFVDFSFPNLRRFTDLQWADSLADSGMHIVLISDRS LTPLANYWILKSNKIQGIIYSDDDDIVQQQKMHRLFTGRLANSKRGRTLNYTEFILLK RFVSGISIQQIVNIDNIDIKKLYVHKLRLENKLGHSIHKIISNIL" gene 3954765..3957640 /gene="misL" /locus_tag="STM3757" /db_xref="GeneID:1255281" regulatory 3954765..3954770 /regulatory_class="ribosome_binding_site" /gene="misL" /locus_tag="STM3757" /note="putative RBS for misL; RegulonDB:STMS1H003727" CDS 3954773..3957640 /gene="misL" /locus_tag="STM3757" /note="Pathogenicity island encoded protein: SPI3; MisL (gi|4324610)" /codon_start=1 /transl_table=11 /product="putative autotransported protein" /protein_id="NP_462656.1" /db_xref="GeneID:1255281" /translation="MPTPQNYSFIAIAVSAALASMVFPSQAAWVDVDSLPSSGLVSQL PPELQAIIPAQASTGFTKVGTMPNYVYQWNTGTIPVYGNGLTLNGPGAEAFEHTVTVI QNSGTGSPGVIFGNDLTIRTQSANAANNGRDVDGIRTHGANTPDNPVFIITGDRTRIY VDGQDGDGINAGYNSLGQGWTGSANIYVGDDLYIKTTGSQGRGITANAMRDASRAKNT IVVGNRAHIVTTGDSSEGLRTGQSGSLIRLGDDATIETSGASSTGIYAASSSRTELGN NATITVNGASAHAVYATNATVNLGENATISVNSASKAASYSKAPAGLYALSRGAINLA GGAAITMAGDNSSESYAISTETGGIVDGSSGGRFVIDGDIRAAGATAASGTLPQQNST IKLNMTDNSRWDGASYITSATAGTGVISVQMSDATWNMTSSSTLTDLTLNSGATINFS HEDGEPWQTLTINEDYVGNGGKLVFNTVLNDDDSETDRLQVLGNTSGNTFVAVNNIGG AGAQTIEGIEIVNVAGNSNGTFEKASRIVAGAYDYNVVQKGKNWYLTSYIEPDEPIIP DPVDPVIPDPVVPDPVDPDPVDPVIPDPVIPDPVDPDPVDPEPVDPVIPDPTIPDIGQ SDTPPITEHQFRPEVGSYLANNYAANTLFMTRLHDRLGETQYTDMLTGEKKVTSLWMR NVGAHTRFNDGSGQLKTRINSYVLQLGGDLAQWSTDGLDRWHIGAMAGYANSQNRTLS SVSDYHSRGQVTGYSVGLYGTWYANNIDRSGAYVDTWMLYNWFDNKVMGQDQAAEKYK SKGITASVEAGYSFRLGESAHQSYWLQPKAQVVWMGVQADDNREANGTLVKDDTAGNL LTRMGVKAYINGHNAIDNDKSREFQPFVEANWIHNTQPASVKMDDVSSDMRGTKNIGE LKVGIEGQVTPRLNVWGNVAQQVGDTGYSDTQGMLGMKYSF" misc_feature 3954773..3957637 /gene="misL" /locus_tag="STM3757" /note="intestinal colonization autotransporter adhesin MisL; Region: PRK15313" /db_xref="CDD:237940" gene complement(3957735..3958208) /gene="fidL" /locus_tag="STM3758" /db_xref="GeneID:1255282" CDS complement(3957735..3958199) /gene="fidL" /locus_tag="STM3758" /note="Pathogenicity island encoded protein: SPI3; FidL (gi|4324611)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462657.1" /db_xref="GeneID:1255282" /translation="MLACLTLLCLGVGLGHLFHLYTEKNRDPEKCTAPVIVFYNNTQA NLTLDFMYSLKKRTGVVSISGTYYVDNKMSGVIRRDVSYVWSENKDSTHFISTDINKV TRDETLSDAVIETVLPDFYVYPGKSISYTILTQGHRGFMFTIGKRPIFFCTH" regulatory complement(3958203..3958208) /regulatory_class="ribosome_binding_site" /gene="fidL" /locus_tag="STM3758" /note="putative RBS for fidL; RegulonDB:STMS1H003728" gene complement(3958210..3959080) /gene="marT" /locus_tag="STM3759" /db_xref="GeneID:1255283" CDS complement(3958210..3959067) /gene="marT" /locus_tag="STM3759" /note="Pathogenicity island encoded protein: SPI3; putative transcriptional regulator MarT (gi|4324612)" /codon_start=1 /transl_table=11 /product="putative transcriptional regulatory protein" /protein_id="NP_462658.4" /db_xref="GeneID:1255283" /translation="MSCYAATASDYTQWCLLTLSNYVMFWHGNNAMLWIINDNIEFNP EMNRLASLSRPDLNIILTTPASRCLRLLLENAPSVVSQQTFFQKVWEEDGMVVSANTL YQNISIIRRGLRTVGENEDTLIITVPRRGFQIEPGVSLMTIRKDFAQAIEKKGETPPR MSGRWFKHYVPVLWMTGTFAVGILLGTISWQTVPDKDFYDRYTLVETTQGCHFFSRNE DIESGSRFASYKSMILKTGMDCQKYPWVYFPSSSRTPAVTALICQQPYKTRGDTGCVT LFFRGVTHG" misc_feature complement(3958651..3958974) /gene="marT" /locus_tag="STM3759" /note="DNA-binding winged helix-turn-helix (wHTH) domain [Transcription]; Region: CadC1; COG3710" /db_xref="CDD:442924" regulatory complement(3959075..3959080) /regulatory_class="ribosome_binding_site" /gene="marT" /locus_tag="STM3759" /note="putative RBS for marT; RegulonDB:STMS1H003729" gene complement(3959120..3959233) /locus_tag="STM3760" /db_xref="GeneID:1255284" CDS complement(3959120..3959233) /locus_tag="STM3760" /note="Pathogenicity island encoded protein: SPI3" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_453069.1" /db_xref="GeneID:1255284" /translation="MIFSPQYKTGDLTNKKTKRTFTPESAIMRKAVSTLTC" gene 3959839..3960531 /gene="slsA" /locus_tag="STM3761" /db_xref="GeneID:1255285" regulatory 3959839..3959844 /regulatory_class="ribosome_binding_site" /gene="slsA" /locus_tag="STM3761" /note="putative RBS for slsA; RegulonDB:STMS1H003730" CDS 3959851..3960531 /gene="slsA" /locus_tag="STM3761" /note="Pathogenicity island encoded protein: SPI3; SlsA (gi|4324613)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462660.1" /db_xref="GeneID:1255285" /translation="MSTPANFNGQRPAIDANDAVMLLIDHQSGLFQTVGDMPMPELRA RAAALAKIATLCNMPVITTASVPQGPNGPLIPEIHANAPHAQYVARKGEINAWDNADF VQAVKATGRKTLIIAGTITSVCMAFPAISAVAEGYKVFAVIDASGTYSKMAQEITMAR VVQAGVVPMDTAAVASELQRTWNREDAAEWADVYTKIFPAYQLLIESYTKAQEVVKNN ELLDSQRA" misc_feature 3959908..3960390 /gene="slsA" /locus_tag="STM3761" /note="Cysteine hydrolases; This family contains amidohydrolases, like CSHase (N-carbamoylsarcosine amidohydrolase), involved in creatine metabolism and nicotinamidase, converting nicotinamide to nicotinic acid and ammonia in the pyridine nucleotide cycle. It...; Region: cysteine_hydrolases; cl00220" /db_xref="CDD:444760" misc_feature order(3959923..3959925,3960118..3960120,3960220..3960222) /gene="slsA" /locus_tag="STM3761" /note="catalytic triad [active]" /db_xref="CDD:238245" misc_feature 3960205..3960210 /gene="slsA" /locus_tag="STM3761" /note="conserved cis-peptide bond [active]" /db_xref="CDD:238245" gene complement(3960760..3961244) /gene="cigR" /locus_tag="STM3762" /db_xref="GeneID:1255286" CDS complement(3960760..3961239) /gene="cigR" /locus_tag="STM3762" /note="Pathogenicity island encoded protein: SPI3; CigR (gi|4324614)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462661.1" /db_xref="GeneID:1255286" /translation="MNNRRGLTAVLATLITFSLSATPVLANPGNGNGGGHGNNAANQG NNGNGHKGNAGQKTEHRKNGGKPDHVESDISYAVARQLAVNLGLTGYQSLPPGIAKNL ARGKPLPPGIAKKTVPASMLGQLPYYPGYEWKIVGDNLVLIALSTAVVTAIINGVFD" misc_feature complement(3960763..>3961074) /gene="cigR" /locus_tag="STM3762" /note="anti-virulence regulator CigR family protein; Region: T3SS_CigR_fam; NF040487" /db_xref="CDD:468512" regulatory complement(3961239..3961244) /regulatory_class="ribosome_binding_site" /gene="cigR" /locus_tag="STM3762" /note="putative RBS for cigR; RegulonDB:STMS1H003731" gene complement(3961554..3964284) /gene="mgtB" /locus_tag="STM3763" /db_xref="GeneID:1255287" CDS complement(3961554..3964280) /gene="mgtB" /locus_tag="STM3763" /EC_number="3.6.1.-" /note="Pathogenicity island encoded protein: SPI3; Mg(2+) transport ATPase, P-type 2. (SW:ATMB_SALTY)" /codon_start=1 /transl_table=11 /product="Mg2+ transport protein" /protein_id="NP_462662.1" /db_xref="GeneID:1255287" /translation="MTDMNIENRKLNRPASENDKQHKKVFPIEAEAFHSPEETLARLN SHRQGLTIEEASERLKVYGRNEVAHEQVPPALIQLLQAFNNPFIYVLMALAGVSFITD YWLPLRRGEETDLTGVLIILTMVSLSGLLRFWQEFRTNRAAQALKKMVRTTATVLRRG PGNIGAVQEEIPIEELVPGDVVFLAAGDLVPADVRLLASRDLFISQSILSGESLPVEK YDVMADVAGKDSEQLPDKDKSLLDLGNICLMGTNVTSGRAQAVVVATGSRTWFGSLAK SIVGTRTQTAFDRGVNSVSWLLIRFMLIMVPVVLLINGFSKGDWVEASLFALAVAVGL TPEMLPMIVSSNLAKGAIAMSRRKVIVKRLNAIQNFGAMDVLCTDKTGTLTQDNIFLE HHLDVSGVKSSRVLMLAWLNSSSQSGARNVMDRAILRFGEGRIAPSTKARFIKRDELP FDFVRRRVSVLVEDAQHGDRCLICKGAVEEMMMVATHLREGDRVVALTETRRELLLAK TEDYNAQGFRVLLIATRKLDGSGNNPTLSVEDETELTIEGMLTFLDPPKESAGKAIAA LRDNGVAVKVLTGDNPVVTARICLEVGIDTHDILTGTQVEAMSDAELASEVEKRAVFA RLTPLQKTRILQALQKNGHTVGFLGDGINDAPALRDADVGISVDSAADIAKESSDIIL LEKDLMVLEEGVIKGRETFGNIIKYLNMTASSNFGNVFSVLVASAFIPFLPMLAIHLL IQNLMYDISQLSLPWDKMDKEFLRKPRKWDAKNIGRFMLWIGPTSSIFDITTFALMWY VFAANNVEAQALFQSGWFIEGLLSQTLVVHMLRTQKIPFIQSRATLPVLLTTGLIMAI GIYIPFSPLGAMVGLEPLPLSYFPWLVATLLSYCLVAQGMKRFYIKRFGQWF" misc_feature complement(3961557..3964268) /gene="mgtB" /locus_tag="STM3763" /note="magnesium-transporting ATPase; Provisional; Region: PRK15122" /db_xref="CDD:237914" regulatory complement(3964279..3964284) /regulatory_class="ribosome_binding_site" /gene="mgtB" /locus_tag="STM3763" /note="putative RBS for mgtB; RegulonDB:STMS1H003732" gene complement(3964500..3965203) /gene="mgtC" /locus_tag="STM3764" /db_xref="GeneID:1255288" CDS complement(3964500..3965195) /gene="mgtC" /locus_tag="STM3764" /note="Pathogenicity island encoded protein: SPI3; Mg(2+) transport ATPase protein C. (SW:ATMC_SALTY)" /codon_start=1 /transl_table=11 /product="Mg2+ transport protein" /protein_id="NP_462663.1" /db_xref="GeneID:1255288" /translation="MEERMLMFPYILNLLAAMLLGALIGAERQWRQRMAGLRTNALVA TGAAVFILSSMTTSPDSPGRIAAQIVSGIGFLGAGVIMREGMNVRGLNTAATLWCSAG IGVLCGLGQFKNALAATIIILCANILLREAAQRINQLPISAEGEKRYILKVTCNKEDE SAVRQWLLNIVKEAAICLQGLGSVPAQEQGYKEIRAELVGHADYRKTRELIISRIGDN DNITAIHWSIDSQ" misc_feature complement(3964503..3965177) /gene="mgtC" /locus_tag="STM3764" /note="MgtC family protein; Region: PRK15385" /db_xref="CDD:185283" regulatory complement(3965198..3965203) /regulatory_class="ribosome_binding_site" /gene="mgtC" /locus_tag="STM3764" /note="putative RBS for mgtC; RegulonDB:STMS1H003733" gene 3965695..3966606 /gene="yicL" /locus_tag="STM3765" /db_xref="GeneID:1255289" regulatory 3965695..3965700 /regulatory_class="ribosome_binding_site" /gene="yicL" /locus_tag="STM3765" /note="putative RBS for yicL; RegulonDB:STMS1H003734" CDS 3965704..3966606 /gene="yicL" /locus_tag="STM3765" /note="integral membrane protein; hypothetical protein in selC 3'region. (SW:YICL_SALTY)" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_462664.1" /db_xref="GeneID:1255289" /translation="MGSTRKGMLNVLIAAVLWGSSGVCAQYIMEQSRMSSQFLTMIRL LFAGLILVTFSFMHGDKIFSILKNRKDALSLLIFSVVGALTVQLTFLLTIEKSNAATA TVLQFLSPTIIVAWFALARRTRPGILVLTAILTSLIGTFLLVTHGNPTSLSISSAALF WGIASAFAAAFYTTWPSRLIAQYGTLPVVGWSMSFGGLILLPFYAKEGTHFAVSGSLI LAFFYLVVIGTSLTFSLYLKGAQLIGGPKASILSCAEPLSSALLSLLLLGISFTLPDW LGTLLILSSVILISLDSRRRARAA" misc_feature 3965755..3966564 /gene="yicL" /locus_tag="STM3765" /note="Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950" /db_xref="CDD:273359" gene complement(3966649..3967597) /locus_tag="STM3766" /db_xref="GeneID:1255290" CDS complement(3966649..3967590) /locus_tag="STM3766" /note="similar to E. coli orf, hypothetical protein (AAC75365.1); Blastp hit to AAC75365.1 (296 aa), 67% identity in aa 1 - 278, 45% identity in aa 216 - 296" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462665.1" /db_xref="GeneID:1255290" /translation="MKKSPTSTPHDAVFKTFLRHPDTARDFLNIHLPHSLRIRCDLTT LKLAPDSFIEKNLRAFYSDVLWSLKTCEGDGYIYVVIEHQSTPDAHMAFRLMRYATAA MQRHLDAGHKTLPLVIPMLFYHGAKSPYPFSLCWLDEFDDPALARQLYATAFPLVDIT VVPDNEIMQHRRIAMLELVQKHIRQRDLMGLVERLAVLLITGNANDSQLKALFNYLLI QHGSTPRFGKFIREVARRVPQHKERLMTIVDRIRESGRRKGKREGVQQGIQQGIHQGK QEEALRIAHTMLEQGIEREMVLMITGLSDEEIKAKRH" misc_feature complement(3966652..3967590) /locus_tag="STM3766" /note="ISNCY family transposase; Region: PRK09956" /db_xref="CDD:182167" regulatory complement(3967592..3967597) /regulatory_class="ribosome_binding_site" /locus_tag="STM3766" /note="putative RBS for STM3766; RegulonDB:STMS1H003735" gene complement(3967826..3968575) /locus_tag="STM3767" /db_xref="GeneID:1255291" CDS complement(3967826..3968569) /locus_tag="STM3767" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462666.1" /db_xref="GeneID:1255291" /translation="MQQINFYRQRVAINVLAKDIANAKAIYEAAEGHAVIGVLSAQFA TVEEGVPEVKRWMAEVPSISVGLGAGDPAQYYKAAMIAAHTHPAHVNQTFTGSGFAAG ALAATGGEQTHINALVSPTGTPGEVVISTGVSSSQGTPARVSCEAAVRMMQDMGAHAA KFFPMGGEKSLPELYALATTAARHGMTLIEPTGGISLDNFGIILQTCLEAGVPRVMPH VYSSIIDPQTGNTRPEDIIRLMEIVKALV" misc_feature complement(3967862..3968551) /locus_tag="STM3767" /note="conserved hypothetical protein EF_0839/AHA_3917; Region: EF_0839; TIGR03581" /db_xref="CDD:188342" gene complement(3968556..3969668) /locus_tag="STM3768" /db_xref="GeneID:1255292" CDS complement(3968556..3969665) /locus_tag="STM3768" /codon_start=1 /transl_table=11 /product="putative selenocysteine synthase (L-seryl-tRNA(Ser) selenium transferase)" /protein_id="NP_462667.1" /db_xref="GeneID:1255292" /translation="MTPNIYQQLGLKKVINACGKMTILGVSSVAPEVMQATARAASAF VEIDALVEKTGELVSRYTGAEDSYITSCASAGIAIAVAAAITHGDRARVALMPDSSGM ANEVVMLRGHNVDYGAPVTSAIRLGGGRIVEVGSSNLATRWQLESAINEKTAALLYVK SHHCVQKGMLSIDDFVQVAQANHLPLIVDAAAEEDLRGWVASGADMVIYSGAKAFNAP TSGFITGRKTWIAACKAQHQGIARAMKIGKENMVGLVYALENYHQGQTTVTAAQLQPV AEAISAIHGLYADIEQDEAGRAIWRIRVRVNASELGLNAQDVEAQLRGGEIAIYARKY QLHQGVFSLDPRTVAEGEMALIVARLREIAEHAAD" misc_feature complement(3968574..3969653) /locus_tag="STM3768" /note="Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the...; Region: AAT_I; cl18945" /db_xref="CDD:450240" regulatory complement(3968570..3968575) /regulatory_class="ribosome_binding_site" /locus_tag="STM3767" /note="putative RBS for STM3767; RegulonDB:STMS1H003736" regulatory complement(3969663..3969668) /regulatory_class="ribosome_binding_site" /locus_tag="STM3768" /note="putative RBS for STM3768; RegulonDB:STMS1H003737" gene complement(3969669..3970536) /locus_tag="STM3769" /db_xref="GeneID:1255293" CDS complement(3969669..3970529) /locus_tag="STM3769" /note="similar to E. coli PTS enzyme IID, mannose-specific (AAC74889.1); Blastp hit to AAC74889.1 (286 aa), 39% identity in aa 16 - 286" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system enzyme II" /protein_id="NP_462668.3" /db_xref="GeneID:1255293" /translation="MMSSDVMQHELVERARESGALTKADITKAWFIYWLGAEVSSSYE RLQSLIFCASMTPIIKKLYPQKEEQVEALKRHLNFFNSEQTFGAVIQGISIAMEEQKT RGEPINDSSITGIKTGLMGPLAGMGDSIIWAAVMPLLIAIFIPFAANGSAMGGIIPLI LYPAITLAISYGMVHKGYTLGRDSIIGLLQGGRIKELIYGANVLGLIMMGALSASYVK ITTPLKISALKGSEVVVQQILDSIAPGLLPLAAVFAIYFYLVKKGPRYTTILLSIVAL SIVCSLLGVL" misc_feature complement(3969672..3970469) /locus_tag="STM3769" /note="Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IID component [Carbohydrate transport and metabolism]; Region: ManZ; COG3716" /db_xref="CDD:442930" gene complement(3970526..3971281) /locus_tag="STM3770" /db_xref="GeneID:1255294" CDS complement(3970526..3971275) /locus_tag="STM3770" /note="similar to E. coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1); Blastp hit to AAC76173.1 (267 aa), 31% identity in aa 19 - 232" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system enzyme IIC" /protein_id="NP_462669.1" /db_xref="GeneID:1255294" /translation="MDTLLFASLMGLYYWFARLRLGYTFSAMLLQPVVIAVFVGLLLG NMQTAMIIGAGMQLVYLGVTSTPGGNVPSDPALAACISIPIAVKAGMDPNLAIALAIP FGVIGVFLDQLRRTLNAAWVHMADKHAETANMAGIMRCAFLYPALLGLVLRFPVVFAA NYFGQDVVESFLKLMPHWLTHSFEIMGGILPALGFAITIMVIGKKSLLPWFIGGFFAV LYLKVDIMAMAIFGTCVAFLIKGLAKNEGAA" misc_feature complement(3970529..3971269) /locus_tag="STM3770" /note="Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IIC component [Carbohydrate transport and metabolism]; Region: ManY; COG3715" /db_xref="CDD:442929" regulatory complement(3970531..3970536) /regulatory_class="ribosome_binding_site" /locus_tag="STM3770" /note="putative RBS for STM3769; RegulonDB:STMS1H003738" regulatory complement(3971276..3971281) /regulatory_class="ribosome_binding_site" /locus_tag="STM3770" /note="putative RBS for STM3770; RegulonDB:STMS1H003739" gene complement(3971421..3971913) /locus_tag="STM3771" /db_xref="GeneID:1255295" CDS complement(3971421..3971906) /locus_tag="STM3771" /note="similar to E. coli PTS enzyme IIAB, mannose-specific (AAC74887.1); Blastp hit to AAC74887.1 (323 aa), 29% identity in aa 164 - 320" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system enzyme IIB" /protein_id="NP_462670.1" /db_xref="GeneID:1255295" /translation="MANIVLCRIDSRLIHGQVVTKWVGQSQANRIAVVSDELDADPFM KNIYLMAAPPNIKVDCFGNQSFAAAWKENQLGDGNVLVLFPSLAAVQDAIQLGFDVTR IQVGGLGGGPNRKAVFQNITLDEKDVGILNDLKNRGVQVFFQTIPEDKPQPLDDILKK F" misc_feature complement(3971433..3971900) /locus_tag="STM3771" /note="Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIB [Carbohydrate transport and metabolism]; Region: AgaB; COG3444" /db_xref="CDD:442668" regulatory complement(3971908..3971913) /regulatory_class="ribosome_binding_site" /locus_tag="STM3771" /note="putative RBS for STM3771; RegulonDB:STMS1H003740" gene complement(3971917..3972350) /locus_tag="STM3772" /db_xref="GeneID:1255296" CDS complement(3971917..3972342) /locus_tag="STM3772" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system enzyme IIA" /protein_id="NP_462671.1" /db_xref="GeneID:1255296" /translation="MTTTQPLPHILLLTHGGWGQPLCNSLRMVTGEIKGVTEIALMPV DTLGEFYQRVEAVVKTLPEGSLILTDFVGGTTSNVAARLSADYPVAVIAGLNASLLLE ALDRREQGMLTACVDELVEAGRSSCLDVVAHVRQLQQSL" misc_feature complement(3971968..3972318) /locus_tag="STM3772" /note="PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_man; cd00006" /db_xref="CDD:237978" misc_feature complement(order(3972028..3972030,3972118..3972120, 3972220..3972222,3972253..3972258,3972298..3972300)) /locus_tag="STM3772" /note="active pocket/dimerization site [active]" /db_xref="CDD:237978" misc_feature complement(order(3972118..3972120,3972133..3972135, 3972298..3972300)) /locus_tag="STM3772" /note="active site" /db_xref="CDD:237978" misc_feature complement(3972298..3972300) /locus_tag="STM3772" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:237978" regulatory complement(3972345..3972350) /regulatory_class="ribosome_binding_site" /locus_tag="STM3772" /note="putative RBS for STM3772; RegulonDB:STMS1H003741" gene complement(3972561..3975364) /locus_tag="STM3773" /db_xref="GeneID:1255297" CDS complement(3972561..3975359) /locus_tag="STM3773" /note="ATPase domain; similar to E. coli psp operon transcriptional activator (AAC74385.1); Blastp hit to AAC74385.1 (330 aa), 33% identity in aa 12 - 239" /codon_start=1 /transl_table=11 /product="putative NtrC family transcriptional regulator" /protein_id="NP_462672.1" /db_xref="GeneID:1255297" /translation="MRRIEIVLGELERLTRGLCLADLAQETAFTAEAIGFNLGLARNS VSKDLNQLWNDGLAIKSRGRPVYFLHRQALETLLGRQLEESEREVRSVADVLPHEEHY APDDPFTSLIGYDRSLRDAVEKGRAAVLYPHGLHVLLTGPSGVGKTFFAELMHRFACE QASGAIPPLVYFNCAEYAHNPELLSSHLFGHRQGAFTGANEHKTGLVEQADGGYLLLD EVHRLSYEGQEKLFSILDKGEYRPLGVSSQPRSISVRLICATTEPVGSALLRTFQRRI QVCIDLPGIRQRSVEEQIELIVGFLQRESRKIERTVSIDKPLLLWLLNKPLEGNIGQL KSDIQFLCAQAWASGMTEHNDTLQLDKRLAEMSVNPTPEQRLLVDTLFEGKARLNIDA RTLPALKTSLATGAEIEESDLFYSFLTREYVNLRNSNVPPAETLAILKNKLSSIFEYG LYSRDSVAHPPRYGDQIEERVTLLIGCVEQVLGFSLPENLVNPLRKHFLALIGYVQRG LIPQLYSSSLILDRCKDEYDNATLLCRKINELLHIQCPATEVVWLCLFLKECRHYRQR IDASPDCGVILIAHGATTATSQAQYVNRVLERELFSAIDMPFEQSVHDTLETLTQMIQ TRQYRRLILLVDIGSLIHFGSTISKLFQIDVLLMPNITLTSLLEVGLDLSYETSDLPQ LTALLQSKNIPCQLCTPQQENGGKVLVISCITGMGTAEKIKKVLEESFGELMSQDTRM VILDYNEVRSLERVQQALNASERLAGIVGTFQPGLPDIPFISLEELFSEQGPELVLSL LTPDLSNAERRLEMERSAMRFISALTMESIINHISVLNPQRILKEMEGVFNHLTSSLS LKPSRQVTLRFLIHCCCMVERIVINRKPLQMALESQPNLDARAFSVIKSAFLPIEDAY AIRLSDAEYFYIYELLYS" misc_feature complement(3972864..3975359) /locus_tag="STM3773" /note="Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms]; Region: PspF; COG1221" /db_xref="CDD:440834" misc_feature complement(3972564..3972848) /locus_tag="STM3773" /note="PRD domain; Region: PRD; pfam00874" /db_xref="CDD:459973" regulatory complement(3975359..3975364) /regulatory_class="ribosome_binding_site" /locus_tag="STM3773" /note="putative RBS for STM3773; RegulonDB:STMS1H003742" gene 3975550..3975849 /locus_tag="STM3774" /db_xref="GeneID:1255298" regulatory 3975550..3975555 /regulatory_class="ribosome_binding_site" /locus_tag="STM3774" /note="putative RBS for STM3774; RegulonDB:STMS1H003743" CDS 3975556..3975849 /locus_tag="STM3774" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462673.1" /db_xref="GeneID:1255298" /translation="MKRKTLLLIATLVALPGVTYADSPFSSLQSAHEKNTILKDLRKM CTPKGALTDEAWEKKIMASEGNQQHIREAMIAIERNNQHNYWQALGKVECPEM" misc_feature 3975559..3975846 /locus_tag="STM3774" /note="YicS family protein; Region: YicS_fam; NF041639" /db_xref="CDD:469522" gene 3975948..3977337 /locus_tag="STM3775" /db_xref="GeneID:1255299" regulatory 3975948..3975953 /regulatory_class="ribosome_binding_site" /locus_tag="STM3775" /note="putative RBS for STM3775; RegulonDB:STMS1H003744" CDS 3975955..3977337 /locus_tag="STM3775" /note="similar to E. coli 6-phospho-beta-glucosidase; cryptic (AAC75758.1); Blastp hit to AAC75758.1 (474 aa), 34% identity in aa 4 - 472" /codon_start=1 /transl_table=11 /product="putative glycosyl hydrolase family" /protein_id="NP_462674.1" /db_xref="GeneID:1255299" /translation="MRYRFPDNFWWGSACSALQTEGDSLNGGKSQTTWDVWFERQPGR FHQGVGPAETSTFYRHWKQDIALLKQLKHNSFRTSLSWARLIPDGVGEVNPQAVSFYN HVIDELLAQGITPFITLFHFDMPMVMQEKGGWENRDVVEAFGRYAQTCFTLFGDRVKH WFTFNEPIVPVEGGYLYDFHYPNVVDFKRAATVAYHTVLAHSTAVRAWRAGRYDGEIG IVLNLTPSYPRSQHPADVQAAHHADLLFNRSFLDPVLKGEYPADLVALLKTYDQLPAC QPGDRQLIADGKIDLLGINYYQPRRVKCRDTAVNPQAPFMPEWLFDYYDMPGRKMNPY RGWEIYAPGIYDIITNLRDNYGNPRCFISENGMGVENEQRFVQAGQIHDDYRIDFISE HLKWLHKGISEGCHCLGYHMWTFIDNWSWLNGYKNRYGFVQLDLATQTRTVKKSGEWF AATAEHNGFD" misc_feature 3975955..3977319 /locus_tag="STM3775" /note="Beta-glucosidase/6-phospho-beta-glucosidase/beta- galactosidase [Carbohydrate transport and metabolism]; Region: BglB; COG2723" /db_xref="CDD:442035" gene complement(3977397..3978602) /gene="yicM" /locus_tag="STM3776" /db_xref="GeneID:1255300" CDS complement(3977397..3978590) /gene="yicM" /locus_tag="STM3776" /note="1st mdule; similar to E. coli putative transport protein (AAC76685.1); Blastp hit to AAC76685.1 (451 aa), 87% identity in aa 56 - 448" /codon_start=1 /transl_table=11 /product="putative MFS family tranport protein" /protein_id="NP_462675.1" /db_xref="GeneID:1255300" /translation="MNENIAEKFRADGVARPNWSAVFAVAFCVACLITVEFLPVSLLT PMAQDLGISEGVAGQSVTVTAFVAMFSSLFITQIIQATDRRYIVILFAVLLTASCLMV SFANSFTLLLLGRACLGLALGGFWAMSASLTMRLVPARTVPKALSVIFGAVSIALVIA APLGSFLGGIIGWRNVFNAAAVMGVLCVIWVVKSLPSLPGEPSHQKQNMFSLLQRPGV MAGMIAIFMSFAGQFAFFTYIRPVYMNLAGFDVDGLTLVLLSFGIASFVGTSFSSYVL KRSVKLALAGAPLLLALSALTLIVWGSDKTVAAAIAIIWGLAFALVPVGWSTWITRSL ADQAEKAGSIQVAVIQLANTCGAAVGGYALDNFGLLSPLALSGGLMLLTALVVAAKVR ITPMS" misc_feature complement(3977409..3978590) /gene="yicM" /locus_tag="STM3776" /note="purine ribonucleoside efflux pump NepI; Region: nepI; PRK10213" /db_xref="CDD:182309" regulatory complement(3978597..3978602) /regulatory_class="ribosome_binding_site" /gene="yicM" /locus_tag="STM3776" /note="putative RBS for yicM; RegulonDB:STMS1H003745" gene 3978799..3979165 /locus_tag="STM3777" /db_xref="GeneID:1255301" regulatory 3978799..3978804 /regulatory_class="ribosome_binding_site" /locus_tag="STM3777" /note="putative RBS for STM3777; RegulonDB:STMS1H003746" CDS 3978806..3979165 /locus_tag="STM3777" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462676.1" /db_xref="GeneID:1255301" /translation="MRTFKTRWFNREAKPHTIKDDELSEAINAVLQGKADNLGGGVYK KRLNQNRDRAIVLAKGGEHWFYTFLYAKQDMANISYRELAGFRELAKHYACLTEDQIT ALINNKELVEVRHVSKN" misc_feature 3978806..3979144 /locus_tag="STM3777" /note="RelE toxin of RelE / RelB toxin-antitoxin system; Region: RelE; pfam06296" /db_xref="CDD:399359" gene 3979142..3979472 /locus_tag="STM3778" /db_xref="GeneID:1255302" regulatory 3979142..3979147 /regulatory_class="ribosome_binding_site" /locus_tag="STM3778" /note="putative RBS for STM3778; RegulonDB:STMS1H003747" CDS 3979149..3979472 /locus_tag="STM3778" /codon_start=1 /transl_table=11 /product="putative helix-turn-helix protein" /protein_id="NP_462677.1" /db_xref="GeneID:1255302" /translation="MSAKTKFKSPAFEPIHSAASGLFSVDAIPQETMRSFDTACLSSI KDLQPLEIKALREKLNVSQPVFARYLNTSVSTVQKWESGAKRPSGMSLKLLNVVQKHG LKVLV" misc_feature 3979275..3979454 /locus_tag="STM3778" /note="DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription]; Region: YiaG; COG2944" /db_xref="CDD:442187" gene complement(3979563..3979839) /locus_tag="STM3779" /db_xref="GeneID:1255303" CDS complement(3979563..3979832) /locus_tag="STM3779" /note="HPr-related protein; similar to E. coli PTS system protein HPr (AAC75468.1); Blastp hit to AAC75468.1 (85 aa), 28% identity in aa 1 - 83" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system" /protein_id="NP_462678.1" /db_xref="GeneID:1255303" /translation="MIRQKVRVMNSTGLHARPAATLAKIVKKYQSSLTLVNNDKEIPI KGMMSILGAGVKGNTMIDLICDGQDELAFMDELKSAFADGFGESV" misc_feature complement(3979572..3979832) /locus_tag="STM3779" /note="HPr or related phosphotransfer protein [Signal transduction mechanisms, Carbohydrate transport and metabolism]; Region: PtsH; COG1925" /db_xref="CDD:441528" regulatory complement(3979834..3979839) /regulatory_class="ribosome_binding_site" /locus_tag="STM3779" /note="putative RBS for STM3779; RegulonDB:STMS1H003748" gene complement(3979842..3980709) /locus_tag="STM3780" /db_xref="GeneID:1255304" CDS complement(3979842..3980702) /locus_tag="STM3780" /note="similar to E. coli tagatose-bisphosphate aldolase 2 (AAC76171.1); Blastp hit to AAC76171.1 (286 aa), 36% identity in aa 1 - 277" /codon_start=1 /transl_table=11 /product="putative fructose-bisphosphate aldolase class-II" /protein_id="NP_462679.1" /db_xref="GeneID:1255304" /translation="MPLVNGRILLNCIQEKHVLAGAFNTTNLETTISILNAIERSGLP NFIQIAPTNAQLSGYDYIYEIVKRHADKMDIPVSLHLDHGKTLEDVKQAVRAGFTSVM IDGAALPLEENIAFTREAVDFCKSFGVPVEAELGAILGKEDDHVSEADCKTEPEKVQR FVEETGCDMLAVSIGNVHGLEDIPRIDIPLLQRIASVSPVPLVIHGGSGIDADILRSF VNYKVAKVNIASDLRKAFITTVGKAWVNNNNEANLARVMANAKQAVEDDVYSKIKMMN KNHSAFRKVS" misc_feature complement(3979854..3980702) /locus_tag="STM3780" /note="class II aldolase; Region: gatY; PRK07998" /db_xref="CDD:181192" misc_feature complement(order(3979971..3979973,3979980..3979982, 3979992..3979994,3980001..3980006,3980010..3980015, 3980277..3980279,3980496..3980501,3980508..3980510, 3980520..3980522,3980532..3980540,3980547..3980549, 3980607..3980609,3980616..3980624)) /locus_tag="STM3780" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238477" misc_feature complement(order(3980013..3980018,3980022..3980024, 3980079..3980081,3980085..3980090,3980166..3980174, 3980454..3980459)) /locus_tag="STM3780" /note="active site" /db_xref="CDD:238477" misc_feature complement(order(3980088..3980090,3980169..3980171, 3980454..3980456)) /locus_tag="STM3780" /note="zinc binding site [ion binding]; other site" /db_xref="CDD:238477" misc_feature complement(order(3980079..3980081,3980085..3980087, 3980166..3980168,3980172..3980174)) /locus_tag="STM3780" /note="Na+ binding site [ion binding]; other site" /db_xref="CDD:238477" regulatory complement(3980704..3980709) /regulatory_class="ribosome_binding_site" /locus_tag="STM3780" /note="putative RBS for STM3780; RegulonDB:STMS1H003749" gene complement(3980765..3982256) /locus_tag="STM3781" /db_xref="GeneID:1255305" CDS complement(3980765..3982249) /locus_tag="STM3781" /note="similar to E. coli L-fuculokinase (AAC75845.1); Blastp hit to AAC75845.1 (482 aa), 24% identity in aa 17 - 444" /codon_start=1 /transl_table=11 /product="putative sugar (pentulose and hexulose) kinase" /protein_id="NP_462680.1" /db_xref="GeneID:1255305" /translation="MPDYHAALVIDIGTTNCKVSCYSCHDVSVLEVRKFPTPTISSDK GEVDFDIEALWQALRLVMAELVASVPFPVKNISIASFGESGVFVDKEGVILTPMLAWY DRRGESYLSSLSKAEAEELYSITGLPPHSNYSAFKMRWLLDNYSLHERKDICWLHAPE VLLWRMTGAKKTEISLASRTLCLDIARRTWSRNAAGILGIPFGVLAPLIKPGEVAGWM TATLREELGFSHEVKVTLAGHDHMVGARALQMQPGDVLNSTGTTEGILLLNTQPTLDV QARRNKLANGCYSDGEFFTLFASLPVGGYALEWVKKTFRLTDKEISTGLEKVMEQYLK PSWSVEHVPVFIPHLRGSGSPNKNRHTRGLLFGLTDSLPPESLLESVFIGLAMEFAHC HGCFNIPAGRTVKVIGPAVKNPYWLQLKADILQCPIEAIAFDETVSLGALLIACPNVV PPTVPVAERYFPDAVRSAKLKIYQQQWLSFYQFKLRQEGALIGE" misc_feature complement(3980915..3982228) /locus_tag="STM3781" /note="nucleotide-binding domain (NBD) of L-fuculokinase (FK) and similar proteins; Region: ASKHA_NBD_FGGY_FK; cd07773" /db_xref="CDD:466793" gene complement(3982242..3983606) /locus_tag="STM3782" /db_xref="GeneID:1255306" CDS complement(3982242..3983600) /locus_tag="STM3782" /note="similar to E. coli PTS system galactitol-specific enzyme IIC (AAC75153.1); Blastp hit to AAC75153.1 (451 aa), 40% identity in aa 5 - 432" /codon_start=1 /transl_table=11 /product="putative PTS system galactitol-specific enzyme IIC component" /protein_id="NP_462681.1" /db_xref="GeneID:1255306" /translation="MNDIAHTLYTVVQYVLGFGPTVLLPLVLFFLALFFKVKPAKALR SSLIVGIGFVGIYAIFDILTSNVGPAAQAMVERTGISLPVVDLGWPPLAAITWGSPIA PFVIPLTMLINVAMLALNKTRTVDVDMWNYWHFALAGTLVYYSTGSFVLGLSAAAIAA IVVLKLADWSAPLVAKYFGLEGISLPTLSSVVFFPIGLLFDKIIDKIPGVNRIHIDPE NVQKKMGIFGEPMMVGTILGVLLGIIAGYDFKHILLLGISIGGVMFILPRMVRILMEG LLPLSEAIKKYLNAKYPGRDDLFIGLDIAVAVGNPAIISTALILTPISVFIAFLLPGN KVLPLGDLANLAVMASMIVLACRGNIFRAVITAIPVIVADLWIATKIAPFITGMAKDV NFKMAEGSSGQVSSFLDGGNPFRFWLLEIFNGNIIAIGLIPVLALIIYGVFRLTKGTV YA" misc_feature complement(3982245..3983582) /locus_tag="STM3782" /note="Phosphotransferase system, galactitol-specific IIC component [Carbohydrate transport and metabolism]; Region: SgcC; COG3775" /db_xref="CDD:442989" regulatory complement(3982251..3982256) /regulatory_class="ribosome_binding_site" /locus_tag="STM3782" /note="putative RBS for STM3781; RegulonDB:STMS1H003750" regulatory complement(3983601..3983606) /regulatory_class="ribosome_binding_site" /locus_tag="STM3782" /note="putative RBS for STM3782; RegulonDB:STMS1H003751" gene complement(3983676..3983970) /locus_tag="STM3783" /db_xref="GeneID:1255307" CDS complement(3983676..3983963) /locus_tag="STM3783" /note="similar to E. coli galactitol-specific enzyme IIB of phosphotransferase system (AAC75154.1); Blastp hit to AAC75154.1 (94 aa), 37% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462682.1" /db_xref="GeneID:1255307" /translation="MSKMILFVCATGVATSTAVAEKVMEYCKDNGLDVNYSQTNVASL PNNTDGAALVVSTTKVPYELDIPVVSGLPIITGVGEDKVLEKIVSILKGQA" misc_feature complement(3983691..3983957) /locus_tag="STM3783" /note="subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC...; Region: PTS_IIB_galactitol; cd05566" /db_xref="CDD:99908" misc_feature complement(order(3983916..3983924,3983928..3983939)) /locus_tag="STM3783" /note="P-loop; other site" /db_xref="CDD:99908" misc_feature complement(order(3983916..3983921,3983928..3983933, 3983937..3983939)) /locus_tag="STM3783" /note="active site" /db_xref="CDD:99908" misc_feature complement(3983937..3983939) /locus_tag="STM3783" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99908" gene complement(3983960..3984440) /locus_tag="STM3784" /db_xref="GeneID:1255308" CDS complement(3983960..3984433) /locus_tag="STM3784" /note="similar to E. coli galactitol-specific enzyme IIA of phosphotransferase system (AAC75155.1); Blastp hit to AAC75155.1 (150 aa), 23% identity in aa 5 - 143" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system mannitol/fructose-specific IIA domain containing protein" /protein_id="NP_462683.1" /db_xref="GeneID:1255308" /translation="MQDIHFRRHYVRHLPKEVSQNDIIKALASPLINDGMVVSDFADH VITREQNFPTGLPVEPVGVAIPHTDHKYVRQNAISVGILAEPVNFEDMGGEPDPVPVR VVFMLALGESNKQLNVLGWIMDVIQDEDFMQQLLVMNDDEIYQSIYTRISERGEV" misc_feature complement(3983993..3984418) /locus_tag="STM3784" /note="PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This...; Region: PTS_IIA_fru; cd00211" /db_xref="CDD:238129" misc_feature complement(order(3984233..3984235,3984290..3984292)) /locus_tag="STM3784" /note="active site" /db_xref="CDD:238129" misc_feature complement(3984233..3984235) /locus_tag="STM3784" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238129" regulatory complement(3983965..3983970) /regulatory_class="ribosome_binding_site" /locus_tag="STM3783" /note="putative RBS for STM3783; RegulonDB:STMS1H003752" regulatory complement(3984435..3984440) /regulatory_class="ribosome_binding_site" /locus_tag="STM3784" /note="putative RBS for STM3784; RegulonDB:STMS1H003753" gene complement(3984451..3985278) /locus_tag="STM3785" /db_xref="GeneID:1255309" CDS complement(3984451..3985194) /locus_tag="STM3785" /note="similar to E. coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); Blastp hit to AAC73824.1 (240 aa), 31% identity in aa 3 - 216" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_462684.1" /db_xref="GeneID:1255309" /translation="MKTLSKSSHIPLYQQVVEWIRESIYSGELVEDDRIPSEFQIMDM LEVSRGTVKKAVDQLVREGVLVQVQGKGTFVKKENVAYPLGEGLLSFAEALASQKINF TTSVITSRLEPANRFVAEKLSIKPGQDVLFLKRLRCIGDEKVMLIENRINIDLCPGII DVDFTRENLFSAIERLSDKKISFSESRYAAKLIGNERGHYLDIGEDAPVLHLEQLVFF SRGLAIDFGNVWLKGNKYYLGTILQRLDA" misc_feature complement(3984463..3985176) /locus_tag="STM3785" /note="DNA-binding transcriptional regulator, GntR family [Transcription]; Region: MngR; COG2188" /db_xref="CDD:441791" regulatory complement(3985201..3985206) /regulatory_class="ribosome_binding_site" /locus_tag="STM3785" /note="putative RBS for STM3785; RegulonDB:STMS1H003754" regulatory complement(3985254..3985262) /regulatory_class="minus_10_signal" /locus_tag="STM3785" /note="putative -10_signal for STM3785; RegulonDB:STMLTH004611" regulatory complement(3985270..3985278) /regulatory_class="minus_35_signal" /locus_tag="STM3785" /note="putative -35_signal for STM3785; RegulonDB:STMLTH004611" gene complement(3985547..3986011) /gene="yicN" /locus_tag="STM3786" /db_xref="GeneID:1255310" CDS complement(3985547..3985999) /gene="yicN" /locus_tag="STM3786" /note="similar to E. coli orf, hypothetical protein (AAC76686.1); Blastp hit to AAC76686.1 (159 aa), 82% identity in aa 10 - 159" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462685.1" /db_xref="GeneID:1255310" /translation="MIWLILATFVVVFIVGFRVLTSDTRRAIRRLSERLNIDVVPIES MIDQMGKTAGGEFLQYLHRPDESHLQNAAQVLLIWQMVIVDGGDQNLQRWHRLLQKAR LAAPITDTQVRLALGFLREMEPDMQEINAFQLRYNAFFQPEEGVHWLH" misc_feature complement(3985571..3985999) /gene="yicN" /locus_tag="STM3786" /note="Protein of unknown function (DUF1198); Region: DUF1198; pfam06711" /db_xref="CDD:429081" regulatory complement(3986006..3986011) /regulatory_class="ribosome_binding_site" /gene="yicN" /locus_tag="STM3786" /note="putative RBS for yicN; RegulonDB:STMS1H003755" gene complement(3986192..3987660) /gene="uhpT" /locus_tag="STM3787" /db_xref="GeneID:1255311" CDS complement(3986192..3987583) /gene="uhpT" /locus_tag="STM3787" /note="hexose phosphate transport protein. (SW:UHPT_SALTY)" /codon_start=1 /transl_table=11 /product="MFS family hexose phosphate transport protein" /protein_id="NP_462686.1" /db_xref="GeneID:1255311" /translation="MLAFLNQVRKPTLDLPLDVRRKMWFKPFMQSYLVVFIGYLTMYL IRKNFNIAQNDMISTYGLSMTELGMIGLGFSITYGVGKTLVSYYADGKNTKQFLPFML ILSAICMLGFSASMGAGSTSLFLMIAFYALSGFFQSTGGSCSYSTITKWTPRRKRGTF LGFWNISHNLGGAGAAGVALFGANYLFDGHVIGMFIFPSIIALIVGFIGLRFGSDSPE SYGLGKAEELFGEEISEEDKETEENEMTKWQIFVEYVLKNKVIWLLCFSNIFLYVVRI GIDQWSTVYAFQELKLSKEVAIQGFTLFEVGALVGTLLWGWLSDLANGRRALVACVAL ALIIATLGVYQHASNQYVYLASLFALGFLVFGPQLLIGVAAVGFVPKKAIGAADGIKG TFAYLIGDSFAKLGLGMIADGTPVFGLTGWAGTFAALDAAAIGCICLMAMVAVMEERK IRREKKIQQVNIA" misc_feature complement(3986201..3987580) /gene="uhpT" /locus_tag="STM3787" /note="hexose-6-phosphate:phosphate antiporter; Region: uhpT; PRK09556" /db_xref="CDD:236564" regulatory complement(3987590..3987595) /regulatory_class="ribosome_binding_site" /gene="uhpT" /locus_tag="STM3787" /note="putative RBS for uhpT; RegulonDB:STMS1H003756" regulatory complement(3987633..3987641) /regulatory_class="minus_10_signal" /gene="uhpT" /locus_tag="STM3787" /note="putative -10_signal for uhpT; RegulonDB:STMLTH004612" protein_bind complement(3987650..3987670) /note="putative binding site for UhpA, RegulonDB: STMS1H000395" /bound_moiety="UhpA" regulatory complement(3987652..3987660) /regulatory_class="minus_35_signal" /gene="uhpT" /locus_tag="STM3787" /note="putative -35_signal for uhpT; RegulonDB:STMLTH004612" protein_bind complement(3987710..3987730) /note="putative binding site for CRP, RegulonDB: STMS1H000107" /bound_moiety="CRP" gene complement(3987726..3989065) /gene="uhpC" /locus_tag="STM3788" /db_xref="GeneID:1255312" CDS complement(3987726..3989054) /gene="uhpC" /locus_tag="STM3788" /note="membrane protein; regulatory protein UHPC. (SW:UHPC_SALTY)" /codon_start=1 /transl_table=11 /product="regulator of uhpT expression" /protein_id="NP_462687.1" /db_xref="GeneID:1255312" /translation="MLSFLKAPANAPLITDKHEVDARYRYWRRHILITIWLGYALFYF TRKSFNAAAPEILASGILTRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGL IATGVVNILFGFSTSLWAFALLWALNAFFQGFGSPVCARLLTAWYSRTERGGWWALWN TAHNVGGALIPLVMAAVALHYGWRVGMMVAGLLAIGVGMVLCWRLRDRPQAIGLPPVG DWRHDALEVAQQQEGAGLSRKEILAKYVLLNPYIWLLSLCYVLVYVVRAAINDWGNLY MSETLGVDLVTANTAVSMFELGGFIGALVAGWGSDKLFNGNRGPMNLIFAAGILLSVG SLWLMPFASYVMQAACFFTTGFFVFGPQMLIGMAAAECSHKEAAGAATGFVGLFAYLG ASLSGWPLAKVLEIWHWTGFFAVIAIAAGISALLLLPFLNAQAPRETHEA" misc_feature complement(3987732..3989033) /gene="uhpC" /locus_tag="STM3788" /note="glucose-6-phosphate receptor/MFS transporter UhpC; Region: PRK11663" /db_xref="CDD:183266" regulatory complement(3989060..3989065) /regulatory_class="ribosome_binding_site" /gene="uhpC" /locus_tag="STM3788" /note="putative RBS for uhpC; RegulonDB:STMS1H003757" gene complement(3989064..3990576) /gene="uhpB" /locus_tag="STM3789" /db_xref="GeneID:1255313" CDS complement(3989064..3990566) /gene="uhpB" /locus_tag="STM3789" /EC_number="2.7.3.-" /note="sensor protein UHPB. (SW:UHPB_SALTY)" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component regulatory sytem with UhpA" /protein_id="NP_462688.1" /db_xref="GeneID:1255313" /translation="MNTFFSRLITVVACFFIFSAAWFCLWSISLHLVERPELAALLFP FGLRLGLMLQCPRGYWPVLLGAEWLLVYWLAQEVALAHLPLLMIGSVLTLLPVALTSR YRHQRDWRTLLLQGAALTAAALLQSLPWLGQGEEAWNALLLTLTGGLTLAPICLVFWH YLTSTTWLPLGPSLVSQPVNWRGRHLIWYLLLFIVSLWLQLGLPAELSRFTPFCLALP IIALAWHYGWQGALIATLMNAIALIASQTWHDHPVDLLLSLLAQSLTGLLLGAGIQRL RELNQSLQKELARNHRLAERLLETEESVRRDVARELHDDIGQTITAIRTQAGIVQRLA ADNGGVKQSGQLIEQLSLGVYDAVRRLLGRLRPRQLDDLTLAQAIRSLLREMELESRG IVSHLDWRIDETALSESQRVTLFRVCQEGLNNIVKHANASAVTLQGWQQDERLMLVIE DDGSGLPPGSHQQGFGLTGMRERVSALGGTLTISCTHGTRVSVSLPQRYV" misc_feature complement(3989073..3990557) /gene="uhpB" /locus_tag="STM3789" /note="signal transduction histidine-protein kinase/phosphatase UhpB; Region: PRK11644" /db_xref="CDD:236945" gene complement(3990566..3991169) /gene="uhpA" /locus_tag="STM3790" /db_xref="GeneID:1255314" CDS complement(3990566..3991156) /gene="uhpA" /locus_tag="STM3790" /note="regulates uhpT operon; LuxR/UhpA family; transcriptional regulatory protein UHPA. (SW:UHPA_SALTY)" /codon_start=1 /transl_table=11 /product="response regulator (repressor) in two-component regulatory system wtih UhpB" /protein_id="NP_462689.1" /db_xref="GeneID:1255314" /translation="MITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLP GRGVQVCICDISMPDISGLELLSQLPKGMATIVLSVHDSPALVEQALNAGARGFLSKR CSPDELIAAVHTVATGGCYLTPDIAVKLAAGRQDPLTKRERQVAEKLAQGMAVKEIAA ELGLSPKTVHVHRANLLEKLGVSNDVELAHRMFDGW" misc_feature complement(3990569..3991156) /gene="uhpA" /locus_tag="STM3790" /note="transcriptional regulator UhpA; Region: PRK10360" /db_xref="CDD:182408" regulatory complement(3990571..3990576) /regulatory_class="ribosome_binding_site" /gene="uhpA" /locus_tag="STM3790" /note="putative RBS for uhpB; RegulonDB:STMS1H003758" regulatory complement(3991164..3991169) /regulatory_class="ribosome_binding_site" /gene="uhpA" /locus_tag="STM3790" /note="putative RBS for uhpA; RegulonDB:STMS1H003759" gene complement(3991231..3992252) /locus_tag="STM3791" /db_xref="GeneID:1255315" CDS complement(3991231..3992244) /locus_tag="STM3791" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462690.1" /db_xref="GeneID:1255315" /translation="MTTRITLWRELFSEQPRILLENDDFTVTAFRYASGVEGLKIQNS RGHLVILPWMGQMIWDAQFDGHDLTMRNMFRQPKPAAEVVATYGCFAFHSGLLANGCP SPEDTHPLHGEMPCAAMDDAWLELEGDSLRVTGRYEYVMGFGHHYQAQPAVVMRKTSA LFDIQMTVTNLASVAMPLQYMCHMNYAYVPNATFRQNIPDTALKLRESVPAHVKPTAQ WLAFNQRLLQGEASLATLNEPDFYDPEIVFFADELDKYTDTPEFSMIAPDGTTFVTRF ASAELNYMTRWILYNGDQQVAAFALPATCRPEGFLAAQRNGTLLQLEPQQTRTFTVTT GIV" misc_feature complement(3991240..3992106) /locus_tag="STM3791" /note="deoxyribose mutarotase_like; Region: deoxyribose_mutarotase; cd09269" /db_xref="CDD:185703" misc_feature complement(order(3991342..3991344,3991375..3991377, 3991516..3991518,3991690..3991692,3991696..3991698, 3991912..3991914)) /locus_tag="STM3791" /note="active site" /db_xref="CDD:185703" misc_feature complement(order(3991321..3991323,3991696..3991698)) /locus_tag="STM3791" /note="catalytic residues [active]" /db_xref="CDD:185703" regulatory complement(3992247..3992252) /regulatory_class="ribosome_binding_site" /locus_tag="STM3791" /note="putative RBS for STM3791; RegulonDB:STMS1H003760" gene complement(3992256..3993583) /locus_tag="STM3792" /db_xref="GeneID:1255316" CDS complement(3992256..3993572) /locus_tag="STM3792" /note="similar to E. coli fucose permease (AAC75843.1); Blastp hit to AAC75843.1 (438 aa), 34% identity in aa 17 - 428" /codon_start=1 /transl_table=11 /product="putative L-fucose permease" /protein_id="NP_462691.1" /db_xref="GeneID:1255316" /translation="MNDKNIVQMPDGYLNKTPLFQFILLSCLFPLWGCAAALNDILIT QFKSVFSLSNFASALVQSAFYGGYFLIAIPASLVIKKTSYKVAILIGLTLYIVGCTLF FPASHMATYTMFLAAIFAIAIGLSFLETAANTYSSMIGPKAYATLRLNISQTFYPIGA AAGILLGKYLVFSEGESLEKQMAGMNAEQVHNFKVLMLENTLEPYKYMIMVLVVVMVL FLLTRFPTCKVAQTASHKRPSALDTLRYLASNARFRRGIVAQFLYVGMQVAVWSFTIR LALELGDINERDASTFMVYSFACFFIGKFIANILMTRFNPEKVLILYSVIGALFLAYV ALAPSFSAVYVAVLVSVLFGPCWATIYAGTLDTVDNEHTEMAGAVIVMAIVGAAVVPA IQGYVADMFHSLQLSFLVSMLCFVYVGVYFWRESKVRGNLAEVAAS" misc_feature complement(3992301..3993509) /locus_tag="STM3792" /note="Fucose permease and similar proteins of the Major Facilitator Superfamily of transporters; Region: MFS_FucP_like; cd17394" /db_xref="CDD:340952" misc_feature complement(order(3992916..3992918,3992928..3992930, 3993105..3993107,3993114..3993116,3993174..3993179, 3993186..3993191,3993297..3993299,3993309..3993311, 3993465..3993467,3993477..3993479,3993486..3993491, 3993498..3993500)) /locus_tag="STM3792" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340952" regulatory complement(3993578..3993583) /regulatory_class="ribosome_binding_site" /locus_tag="STM3792" /note="putative RBS for STM3792; RegulonDB:STMS1H003761" gene complement(3993603..3994529) /locus_tag="STM3793" /db_xref="GeneID:1255317" CDS complement(3993603..3994523) /locus_tag="STM3793" /EC_number="2.7.1.15" /note="ribokinase family; similar to E. coli ribokinase (AAC76775.1); Blastp hit to AAC76775.1 (309 aa), 36% identity in aa 7 - 305" /codon_start=1 /transl_table=11 /product="putative sugar kinase" /protein_id="NP_462692.1" /db_xref="GeneID:1255317" /translation="MDIAVIGSNMVDLITYTNQMPKEGETLEAPAFKIGCGGKGANQA VAAAKLNSKVLMLTKVGDDIFADNTIRNLESWGINTTYVEKVPCTSSGVAPIFVNANS SNSILIIKGANKFLSPEDIDRAAEDLKKCQLIVLQLEVQLETVYHAIEFGKKHGIEVL LNPAPALRELDMSYACKCDFFVPNETELEILTGMPVDTYDHIRAAARSLVDKGLNNII VTMGEKGALWMTRDQEVHVPAFRVNAVDTSGAGDAFIGCFAHYYVQSGDVEAAMKKAV LFAAFSVTGKGTQSSYPSIEQFNEYLSLNE" misc_feature complement(3993627..3994505) /locus_tag="STM3793" /note="ribokinase; Region: D_ribokin_bact; TIGR02152" /db_xref="CDD:274000" misc_feature complement(order(3993660..3993662,3993768..3993770, 3993777..3993782,3994107..3994109,3994200..3994202, 3994206..3994208,3994236..3994238,3994242..3994244, 3994398..3994400,3994407..3994415,3994488..3994490, 3994494..3994496)) /locus_tag="STM3793" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238579" misc_feature complement(order(3994029..3994031,3994194..3994217, 3994233..3994241,3994245..3994247,3994407..3994409, 3994446..3994466,3994479..3994481,3994485..3994487)) /locus_tag="STM3793" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238579" misc_feature complement(order(3993675..3993677,3993684..3993689, 3993696..3993698,3993762..3993764,3993771..3993776, 3993783..3993785,3993792..3993794,3993810..3993812, 3993849..3993851,3993858..3993866,3993972..3993974)) /locus_tag="STM3793" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238579" regulatory complement(3994524..3994529) /regulatory_class="ribosome_binding_site" /locus_tag="STM3793" /note="putative RBS for STM3793; RegulonDB:STMS1H003762" gene 3994842..3995633 /locus_tag="STM3794" /db_xref="GeneID:1255318" regulatory 3994842..3994847 /regulatory_class="ribosome_binding_site" /locus_tag="STM3794" /note="putative RBS for STM3794; RegulonDB:STMS1H003763" CDS 3994848..3995633 /locus_tag="STM3794" /note="similar to E. coli transcriptional repressor for deo operon, tsx, nupG (AAC73927.1); Blastp hit to AAC73927.1 (252 aa), 38% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="putative deoR family regulatory protein" /protein_id="NP_462693.1" /db_xref="GeneID:1255318" /translation="METKQKERIRRLMELLKKTDRIHLKDAARMLEVSVMTIRRDLSQ DDDPLPLTLLGGYIVMVNKPASSTNMPLPAKKTHHRDDLPVAILAAGLVRENDLVFFD NGPEMPLVISMIPDDITFTGICYSHRVFIALNEKPNATAILCGGTYRAKSDAFYDANN PSALDSLNPRKVFISASGVHEHFGVSWFNPDDLAAKRKAMERGLRKILLARHALFDEV APASIGPLSAFDVLISDRPLPTDYAVHCRNGSVKVITPDSESE" misc_feature 3994848..3995612 /locus_tag="STM3794" /note="DNA-binding transcriptional repressor DeoR; Provisional; Region: PRK10681" /db_xref="CDD:182644" gene complement(3995635..3995940) /gene="ilvN" /locus_tag="STM3795" /db_xref="GeneID:1255319" CDS complement(3995635..3995925) /gene="ilvN" /locus_tag="STM3795" /EC_number="4.1.3.-" /note="similar to E. coli acetolactate synthase I, valine sensitive, small subunit (AAC76693.1); Blastp hit to AAC76693.1 (96 aa), 90% identity in aa 1 - 96" /codon_start=1 /transl_table=11 /product="acetolactate synthase I, small subunit" /protein_id="NP_462694.1" /db_xref="GeneID:1255319" /translation="MQKQSHDNVILELTVRNHPGVMTHVCGLFARRAFNVEGILCLPI QGSDQSRIWLLVNDDQRLEQMISQIDKLEDVAKVVRNQSDPTMFNKIAVFFE" misc_feature complement(3995638..3995925) /gene="ilvN" /locus_tag="STM3795" /note="acetolactate synthase 1 small subunit; Region: PRK08178" /db_xref="CDD:236174" misc_feature complement(order(3995776..3995778,3995803..3995805, 3995818..3995823,3995860..3995862,3995875..3995877, 3995881..3995883)) /gene="ilvN" /locus_tag="STM3795" /note="putative valine binding site [chemical binding]; other site" /db_xref="CDD:153150" misc_feature complement(order(3995773..3995775,3995803..3995817, 3995827..3995829,3995836..3995838,3995857..3995859, 3995866..3995871)) /gene="ilvN" /locus_tag="STM3795" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:153150" gene complement(3995929..3997629) /gene="ilvB" /locus_tag="STM3796" /db_xref="GeneID:1255320" CDS complement(3995929..3997617) /gene="ilvB" /locus_tag="STM3796" /EC_number="4.1.3.-" /note="valine sensitive; similar to E. coli acetolactate synthase I,valine-sensitive, large subunit (AAC76694.1); Blastp hit to AAC76694.1 (562 aa), 91% identity in aa 1 - 562" /codon_start=1 /transl_table=11 /product="acetolactate synthase I, large subunit" /protein_id="NP_462695.1" /db_xref="GeneID:1255320" /translation="MASSGTTSTPQRFTGAEFIVHFLERQGIRIVTGIPGGSILPVYD ALSQSTQIRHILARHEQGAGFIAQGMARTEGKPAVCMACSGPGATNLVTAIADARLDS IPLICITGQVPASMIGTDAFQEVDTYGISIPITKHNYLVRNINELPQVMSDAFRLAQS GRPGPVWIDVPKDVQTATIELDALPSPAEKSPPPEFSAESIREAAAMINAAKRPVLYL GGGVINAPTRVRELAEKAQLPTTMTLMALGMLPKAHPLSLGMLGMHGARSTNFILQEA DLLIVLGARFDDRAIGKTEQFCPNAKIIHVDIDRAELGKIKQPHVAIQADVDDVLAQL IPHIEAQPREAWHQLVADLQQEFPCSIPQENNPLSHYGLINAVAACVDDNAIITTDVG QHQMWTAQAYPLNRPRQWLTSGGLGTMGFGLPAAIGAALANPGNKVLCFSGDGSLMMN IQEMATASENQLDVKIILMNNDALGLVHQQQSLFYKQGVFAATYPGSINFMQIAAGFG LDTCDLNNEADPQAALQAIIRRPGPALIHVRIDAEEKVYPMVPPGAANTEMVGE" misc_feature complement(3995932..3997617) /gene="ilvB" /locus_tag="STM3796" /note="acetolactate synthase large subunit; Region: PRK08155" /db_xref="CDD:181257" regulatory complement(3995935..3995940) /regulatory_class="ribosome_binding_site" /gene="ilvN" /locus_tag="STM3795" /note="putative RBS for ilvN; RegulonDB:STMS1H003764" regulatory complement(3997624..3997629) /regulatory_class="ribosome_binding_site" /gene="ilvB" /locus_tag="STM3796" /note="putative RBS for ilvB; RegulonDB:STMS1H003765" gene complement(3997724..3997924) /gene="ivbL" /locus_tag="STM3797" /db_xref="GeneID:1255321" CDS complement(3997724..3997822) /gene="ivbL" /locus_tag="STM3797" /note="similar to E. coli ilvB operon leader peptide (AAC76695.1); Blastp hit to AAC76695.1 (32 aa), 84% identity in aa 1 - 32" /codon_start=1 /transl_table=11 /product="ilvB operon leader peptide" /protein_id="NP_462696.1" /db_xref="GeneID:1255321" /translation="MNPSMLNATLLTTAPSRAVVVVRVVVVVGNAP" misc_feature complement(3997727..3997822) /gene="ivbL" /locus_tag="STM3797" /note="ilvB operon leader peptide IvbL; Region: PRK10214" /db_xref="CDD:182310" regulatory complement(3997827..3997832) /regulatory_class="ribosome_binding_site" /gene="ivbL" /locus_tag="STM3797" /note="putative RBS for ivbL; RegulonDB:STMS1H003766" regulatory complement(3997900..3997908) /regulatory_class="minus_10_signal" /gene="ivbL" /locus_tag="STM3797" /note="putative -10_signal for ivbL; RegulonDB:STMLTH004613" protein_bind complement(3997910..3997938) /note="putative binding site for CRP, RegulonDB: STMS1H000038" /bound_moiety="CRP" regulatory complement(3997916..3997924) /regulatory_class="minus_35_signal" /gene="ivbL" /locus_tag="STM3797" /note="putative -35_signal for ivbL; RegulonDB:STMLTH004613" gene 3998345..3998459 /gene="ysdA" /locus_tag="STM3797A" /db_xref="GeneID:1255322" CDS join(3998345..3998436,3998435..3998459) /gene="ysdA" /locus_tag="STM3797A" /ribosomal_slippage /codon_start=1 /transl_table=11 /product="YsdA" /protein_id="YP_009325922.1" /db_xref="GeneID:1255322" /translation="MSTRTLFLAKGIACATAGNRQRKGTSAGSAPLNHRRRV" gene 3998456..3998545 /gene="ysdB" /locus_tag="STM3796B" /db_xref="GeneID:1255323" CDS 3998456..3998545 /gene="ysdB" /locus_tag="STM3796B" /codon_start=1 /transl_table=11 /product="conserved protein in the LexA regulon" /protein_id="NP_453107.1" /db_xref="GeneID:1255323" /translation="MSVVDITILILKLIVAALQLLDAVLKYLK" misc_feature 3998456..3998542 /gene="ysdB" /locus_tag="STM3796B" /note="type I toxin-antitoxin system toxin TisB; Region: TisB_tox; TIGR04459" /db_xref="CDD:275252" gene 3998638..3999498 /locus_tag="STM3796A" /db_xref="GeneID:1255324" CDS 3998638..3999498 /locus_tag="STM3796A" /codon_start=1 /transl_table=11 /product="integral membrane protein" /protein_id="NP_462698.3" /db_xref="GeneID:1255324" /translation="MTPSTTPDAMTLSVFCILLFAALLHASWNAIVKAGNDKLYAAIG VSGSAAVMALILLPFSPQPAHASIPFLAASTALQVVYTVLVAKTYQVSDMSQTYPLMR GTAPLLVALISVLFLGDSLSSLAWVGIAVICMAILGMACNGRASSQRGVVLALTNACF IAGYTLVDGTGVRLSETALGYTLWSFFLNGACLLTWAMIARRREASRYLAQQWKKGIF GGIGTMGSYGLALWAMTQAPLAVVAALRETSILFGALIAWLLLKEKVAGLRLVAAGGI ALGAILLRLS" misc_feature 3998686..3999495 /locus_tag="STM3796A" /note="Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]; Region: RhaT; COG0697" /db_xref="CDD:440461" gene 3999701..4000885 /gene="emrD" /locus_tag="STM3798" /db_xref="GeneID:1255325" CDS 3999701..4000885 /gene="emrD" /locus_tag="STM3798" /note="similar to E. coli 2-module integral membrane pump; multidrug resistance (AAC76696.1); Blastp hit to AAC76696.1 (396 aa), 92% identity in aa 3 - 396" /codon_start=1 /transl_table=11 /product="MFS family multidrug tranport protein" /protein_id="NP_462699.1" /db_xref="GeneID:1255325" /translation="MKRQRNVNLLLMLVLLVAVGQMAQTIYIPAIADMAQALNVREGA VQSVMAAYLLTYGVSQLFYGPLSDRVGRRPVILVGMSIFMVATLFAMTTHSLTVLIAA SAMQGMGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGSLLDTLWN WRACYAFLLVLCAGVTFSMARWMPETRPAGAPRTRLIASYKTLFGNGAFNCYLLMLIG GLAGIAVFEACSGVLMGAVLGLSSMVVSILFILPIPAAFFGAWFAGRPNKRFSTLMWQ SVICCLLAGLMMWIPGWFGVMNVWTLLIPAALFFFGAGMLFPLATSGAMEPFPFLAGT AGALVGGLQNIGSGVLAWLSAMLPQTGQGSLGLLMTLMGLLILACWLPLASRISHQGQ TV" misc_feature 3999701..4000882 /gene="emrD" /locus_tag="STM3798" /note="multidrug transporter EmrD; Region: emrD; PRK11652" /db_xref="CDD:183259" misc_feature order(3999758..3999763,3999770..3999775,3999845..3999847, 3999854..3999859,4000028..4000030,4000121..4000123, 4000130..4000135,4000370..4000372,4000379..4000381, 4000730..4000732) /gene="emrD" /locus_tag="STM3798" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340878" gene complement(4000812..4001897) /locus_tag="STM3799" /db_xref="GeneID:1255326" CDS complement(4000812..4001897) /locus_tag="STM3799" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462700.1" /db_xref="GeneID:1255326" /translation="MVKILGGVVFKPLIASLMLTSAVVYAKPMPLTAARYAQQLGVGM DVDWARTERGIREFDPLVVRDFKAKGLTHVRIRVAGAPTEARLIHLRKLVEACEYYGV IPIIAYQADAYKTDPSASHEKELINWWSVVARYFGQTSPLLGFDLIYEPADKLNHNMA SLNRVYDKTIRLIHAIDPQRMIFVAPRMRAAPEDLSALKLPAQSQNYVLAEWHIFPWG PLKSGGKYPWTSGTAAEKAAIRARINAAVRWQHKTGHASWVGGWAPGESIKMTPVASQ FAFARFMACELKKAHIPYAINADTQFYDGEEGAWRPAQESLLNAMIAPECETPGKTPG EGNVKPSAPDAISVTPAAASTPGSAIP" gene complement(4001961..4002893) /gene="dsdC" /locus_tag="STM3800" /db_xref="GeneID:1255327" CDS complement(4001961..4002884) /gene="dsdC" /locus_tag="STM3800" /note="similar to E. coli D-serine dehydratase (deaminase) transcriptional activator (AAC75423.1); Blastp hit to AAC75423.1 (311 aa), 90% identity in aa 1 - 307" /codon_start=1 /transl_table=11 /product="LysR family transcriptional activator" /protein_id="NP_462701.1" /db_xref="GeneID:1255327" /translation="MEPLRDTRNRLLNGWQLSKLYTFEVAARHQSFALAADELSLSPS AVSHRINQLEAELGIQLFVRSHRKVELTHEGKRVFWALKSSLDTLNQEILDIKNQELS GTLTVYSRPSIAQCWLVPALGDFTRRYPSISLTMLTGNDNVNLQRAGIDLAIYFDDAP SAQLTHHFLMDEAILPVCSPDYARRFALQDNLNNLRHCTLLHDRQAWSNDSGTDEWHS WAQHFAVNLPDSSGIGFDRSDLAVIAAMNHIGVAMGRKRLVQKRLDSGELIAPFGDMR LKCHQHYYVTTLPGRQWPKIEAFIRWLQEQV" misc_feature complement(4001964..4002881) /gene="dsdC" /locus_tag="STM3800" /note="DNA-binding transcriptional regulator DsdC; Region: PRK10086" /db_xref="CDD:182231" regulatory complement(4002888..4002893) /regulatory_class="ribosome_binding_site" /gene="dsdC" /locus_tag="STM3800" /note="putative RBS for dsdC; RegulonDB:STMS1H003767" protein_bind 4002962..4002973 /note="putative binding site for CRP, RegulonDB: STMS1H000044" /bound_moiety="CRP" protein_bind 4002988..4003008 /note="putative binding site for CRP, RegulonDB: STMS1H000090" /bound_moiety="CRP" gene 4003007..4004447 /gene="dsdX" /locus_tag="STM3801" /db_xref="GeneID:1255328" regulatory 4003007..4003015 /regulatory_class="minus_35_signal" /gene="dsdX" /locus_tag="STM3801" /note="putative -35_signal for dsdX; RegulonDB:STMLTH004614" regulatory 4003034..4003042 /regulatory_class="minus_10_signal" /gene="dsdX" /locus_tag="STM3801" /note="putative -10_signal for dsdX; RegulonDB:STMLTH004614" regulatory 4003095..4003100 /regulatory_class="ribosome_binding_site" /gene="dsdX" /locus_tag="STM3801" /note="putative RBS for dsdX; RegulonDB:STMS1H003768" CDS 4003110..4004447 /gene="dsdX" /locus_tag="STM3801" /note="similar to E. coli transport system permease (serine?) (AAC75424.1); Blastp hit to AAC75424.1 (445 aa), 93% identity in aa 1 - 445" /codon_start=1 /transl_table=11 /product="putative Gnt family transport protein" /protein_id="NP_462702.1" /db_xref="GeneID:1255328" /translation="MHAQIWVVSTLLISIVLIVLTIVKFKFHPFLALLLASFFVGAMM GMGPLEMVTAIENGIGGTLGFLAAVIGLGTILGKMMEVSGAAERIGLTLQRCRWLSAD VIMVLVGLICGITLFVEVGVVLLIPLAFSIAKKTHTSLLKLAIPLCTALMAVHCVVPP HPAALFVANKLGADIGSVIVYGLLVGLMASLVGGPLFLKFLGNRLPFKPVPTEFADLE VRAENTLPSLGATLFTVLLPIGLMLVKTVAELNMAKDGTLYTLLEFIGNPITAMFIAV FVAYYILGLRQHMGMGTLLTHTENGFGAIANILLIIGAGGAFNAILKSSGLADTLAVI LSNMHMHPILLAWLVALILHAAVGSATVAMMGATAIVAPMLPLYPDVSPEIIAIAIGS GAIGCTIVTDSLFWLVKQYCGATLNETFKYYTTATFIASVVALAGTFLLSFII" misc_feature 4003110..4004444 /gene="dsdX" /locus_tag="STM3801" /note="permease DsdX; Provisional; Region: PRK09921" /db_xref="CDD:182147" gene 4004322..4005787 /gene="dsdA" /locus_tag="STM3802" /db_xref="GeneID:1255329" regulatory 4004322..4004330 /regulatory_class="minus_35_signal" /gene="dsdX" /locus_tag="STM3801" /note="putative -35_signal for dsdA; RegulonDB:STMLTH004615" regulatory 4004349..4004357 /regulatory_class="minus_10_signal" /gene="dsdX" /locus_tag="STM3801" /note="putative -10_signal for dsdA; RegulonDB:STMLTH004615" regulatory 4004455..4004460 /regulatory_class="ribosome_binding_site" /gene="dsdA" /locus_tag="STM3802" /note="putative RBS for dsdA; RegulonDB:STMS1H003769" CDS 4004465..4005787 /gene="dsdA" /locus_tag="STM3802" /EC_number="4.3.1.18" /note="similar to E. coli D-serine dehydratase (deaminase) (AAC75425.1); Blastp hit to AAC75425.1 (442 aa), 89% identity in aa 1 - 442" /codon_start=1 /transl_table=11 /product="D-serine deaminase" /protein_id="NP_462703.1" /db_xref="GeneID:1255329" /translation="MENIQKLIARYPLVEDLVALKETTWFNPGATSLAQGLPYVGLTE QDVNAAHDRLARFAPYLAKAFPQTAAAGGMIESDVVAIPAMQKRLEKEYGQTINGEML LKKDSHLAISGSIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYS IAVGSTGNLGLSIGIMSACIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEDDYGVAV EQGRKAAQSDPNCFFIDDENSRTLFLGYAVAGQRLKAQFAQQGRVVDASHPLFVYLPC GVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHDAISVQDIGIDNLTA ADGLAVGRASGFVGRAMERLLDGLYTLDDQTMYDMLGWLAQEEGIRLEPSALAGMAGP QRICASVAYQQRHGFSQTQLGNATHLVWATGGGMVPEDEMEQYLAKGR" misc_feature 4004465..4005784 /gene="dsdA" /locus_tag="STM3802" /note="D-serine dehydratase [Amino acid transport and metabolism]; Region: DsdA; COG3048" /db_xref="CDD:442282" gene complement(4005869..4006399) /gene="yidF" /locus_tag="STM3803" /db_xref="GeneID:1255330" CDS complement(4005869..4006399) /gene="yidF" /locus_tag="STM3803" /note="similar to E. coli putative transcriptional regulator (AAC76697.1); Blastp hit to AAC76697.1 (165 aa), 48% identity in aa 1 - 165" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462704.1" /db_xref="GeneID:1255330" /translation="MTGRQDIVVSDDQIQVVVNRQNSQRPQQLYRNLQRLGIRNVHFI PLLEHDRNGMLTEDSLCSADWGRFLNSVFDIWVREDIQRISVRLFDETLQQWCGGRNG AEAPDKVPLSAECQKCSLLRFCGGGCPEHRDSQGKNQLCEGYQTFFNYSSPHMRVMRD LLKQHRSPEELMAMLR" misc_feature complement(4005950..>4006360) /gene="yidF" /locus_tag="STM3803" /note="Sulfatase maturation enzyme AslB, radical SAM superfamily [Posttranslational modification, protein turnover, chaperones]; Region: AslB; COG0641" /db_xref="CDD:440406" gene complement(4006396..4006768) /gene="yidG" /locus_tag="STM3804" /db_xref="GeneID:1255331" CDS complement(4006396..4006758) /gene="yidG" /locus_tag="STM3804" /note="similar to E. coli orf, hypothetical protein (AAC76698.1); Blastp hit to AAC76698.1 (120 aa), 82% identity in aa 1 - 116" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462705.1" /db_xref="GeneID:1255331" /translation="MPDSRKARRQNDPGLQPERTSLAWFRTLLGYGALMALAVRHHWH QAGFLFWVSISVLAIVAVILWRYTLSRNLMDVAHSDFSETHVVRDKFLISLAVLSLAI LFAVTHIRQLIAFIGNFI" misc_feature complement(<4006567..4006725) /gene="yidG" /locus_tag="STM3804" /note="Domain of unknown function (DUF202); Region: DUF202; pfam02656" /db_xref="CDD:396980" gene complement(4006748..4007106) /gene="yidH" /locus_tag="STM3805" /db_xref="GeneID:1255332" CDS complement(4006748..4007095) /gene="yidH" /locus_tag="STM3805" /note="similar to E. coli orf, hypothetical protein (AAC76699.1); Blastp hit to AAC76699.1 (115 aa), 94% identity in aa 1 - 115" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462706.1" /db_xref="GeneID:1255332" /translation="MKISRLGEAPDYRFSLANERTFLAWIRTSLGFLAAGVGLDQLAP DFATPVIRELLALLLCLFAGGLAIYGYLRWLRNEKAMRLKEDLPYTHSLLIISVILMI VAVIVMGLVLYAG" misc_feature complement(4006760..4007077) /gene="yidH" /locus_tag="STM3805" /note="Uncharacterized membrane protein YidH, DUF202 family [Function unknown]; Region: YidH; COG2149" /db_xref="CDD:441752" regulatory complement(4006763..4006768) /regulatory_class="ribosome_binding_site" /gene="yidH" /locus_tag="STM3805" /note="putative RBS for yidG; RegulonDB:STMS1H003770" regulatory complement(4007101..4007106) /regulatory_class="ribosome_binding_site" /gene="yidH" /locus_tag="STM3805" /note="putative RBS for yidH; RegulonDB:STMS1H003771" gene 4007188..4007475 /locus_tag="STM3806" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1255333" gene complement(4007539..4009213) /gene="yidE" /locus_tag="STM3807" /db_xref="GeneID:1255334" CDS complement(4007539..4009200) /gene="yidE" /locus_tag="STM3807" /note="similar to E. coli putative transport protein (AAC76708.1); Blastp hit to AAC76708.1 (561 aa), 88% identity in aa 9 - 561" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_462707.1" /db_xref="GeneID:1255334" /translation="MSDIALTVSVLALVAVVGLWIGNIKVRGVGFGIGGVLFGGIIVG HFVDQAGVTLSGDMLHFIQEFGLILFVYTIGIQVGPGFFASLRVSGLRLNLFAVLIVI MGGLVTAILHKIFAIPLPVVLGIFSGAVTNTPALGAGQQILRDLGTPVDLVDQMGMSY AMAYPFGICGILLTMWLMRLIFRVNVEAEAQKHESSLANGHSLIQTMNIRVENPNLNN MAIQDVPILNSDKIICSRLKRDDTLMVPSPGTIIQAGDLLHLVGQSTDLHNAQLVIGK EVDTSLSTRGTDLRVERVVVTNEKVLGKRIRDLHFKERYDVVISRLNRAGVELVASSD ASLQFGDILNLVGRPASIDAVANVVGNAQQKLQQVQMLPVFIGIGLGVLLGSIPLFVP GFPVALKLGLAGGPLIMALILGRIGSIGKLYWFMPPSANLALRELGIVLFLAVVGLKS GGDFVDTLTQGEGLSWIGYGIFITAIPLITVGLLARIFAKMNYLTLCGMLAGSMTDPP ALAFANNLHATSGAAALSYATVYPLVMFLRIITPQLLAVIFWGMG" misc_feature complement(4007545..4009200) /gene="yidE" /locus_tag="STM3807" /note="putative transporter; Validated; Region: PRK03818" /db_xref="CDD:179654" regulatory complement(4009208..4009213) /regulatory_class="ribosome_binding_site" /gene="yidE" /locus_tag="STM3807" /note="putative RBS for yidE; RegulonDB:STMS1H003772" gene complement(4009390..4009832) /gene="ibpB" /locus_tag="STM3808" /db_xref="GeneID:1255335" CDS complement(4009390..4009818) /gene="ibpB" /locus_tag="STM3808" /note="similar to E. coli heat shock protein (AAC76709.1); Blastp hit to AAC76709.1 (144 aa), 88% identity in aa 3 - 144" /codon_start=1 /transl_table=11 /product="small heat shock protein" /protein_id="NP_462708.3" /db_xref="GeneID:1255335" /translation="MRNYDLSPLLRQWIGFDKLANALQNSGESQSFPPYNIEKSDDNH YRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPENEPKWLHQGLVMQPFSLSFTLAEN MEVSGATFTNGLLHIDLTRNEPETIAPQRIAINERSALNS" misc_feature complement(4009393..4009818) /gene="ibpB" /locus_tag="STM3808" /note="heat shock chaperone IbpB; Provisional; Region: PRK11597" /db_xref="CDD:183223" misc_feature complement(order(4009477..4009482,4009534..4009536, 4009660..4009665,4009669..4009671,4009675..4009677, 4009702..4009716)) /gene="ibpB" /locus_tag="STM3808" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:107227" regulatory complement(4009827..4009832) /regulatory_class="ribosome_binding_site" /gene="ibpB" /locus_tag="STM3808" /note="putative RBS for ibpB; RegulonDB:STMS1H003773" gene complement(4009928..4010356) /gene="ibpA" /locus_tag="STM3809" /db_xref="GeneID:1255336" CDS complement(4009928..4010341) /gene="ibpA" /locus_tag="STM3809" /note="similar to E. coli heat shock protein (AAC76710.1); Blastp hit to AAC76710.1 (137 aa), 97% identity in aa 1 - 137" /codon_start=1 /transl_table=11 /product="small heat shock protein" /protein_id="NP_462709.3" /db_xref="GeneID:1255336" /translation="MRNFDLSPLYRSAIGFDRLFNLLENNQSQSNGGYPPYNVELVDE NHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLA ENIHVRGANLVNGLLYIELERVIPEANKPRRIEIN" misc_feature complement(4009931..4010341) /gene="ibpA" /locus_tag="STM3809" /note="heat shock chaperone IbpA; Region: PRK10743" /db_xref="CDD:182691" misc_feature complement(order(4009994..4009999,4010051..4010053, 4010177..4010182,4010186..4010188,4010192..4010194, 4010219..4010233)) /gene="ibpA" /locus_tag="STM3809" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:107227" regulatory complement(4010351..4010356) /regulatory_class="ribosome_binding_site" /gene="ibpA" /locus_tag="STM3809" /note="putative RBS for ibpA; RegulonDB:STMS1H003774" gene 4010637..4010983 /gene="yidQ" /locus_tag="STM3810" /db_xref="GeneID:1255337" regulatory 4010637..4010642 /regulatory_class="ribosome_binding_site" /gene="yidQ" /locus_tag="STM3810" /note="putative RBS for yidQ; RegulonDB:STMS1H003775" CDS 4010648..4010983 /gene="yidQ" /locus_tag="STM3810" /note="similar to E. coli orf, hypothetical protein (AAC76711.1); Blastp hit to AAC76711.1 (135 aa), 82% identity in aa 25 - 133" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_462710.1" /db_xref="GeneID:1255337" /translation="MMIKNVWLTLIIWNGMLLLSGCSSVMSHTGGKEGTYPGTRASAT MIGNDETNWGTKSLAILDMPFTAVMDTILLPWDIFRKDSSVRSRVEKSEEETKMTNAV IPPAKMPPP" misc_feature 4010654..4010980 /gene="yidQ" /locus_tag="STM3810" /note="hypothetical protein; Provisional; Region: PRK11616" /db_xref="CDD:183233" gene complement(4010985..4012222) /gene="yidR" /locus_tag="STM3811" /db_xref="GeneID:1255338" CDS complement(4010985..4012211) /gene="yidR" /locus_tag="STM3811" /note="similar to E. coli orf, hypothetical protein (AAC76712.1); Blastp hit to AAC76712.1 (416 aa), 79% identity in aa 13 - 416" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462711.1" /db_xref="GeneID:1255338" /translation="MKQITFTPRHHQLTNTNTWTPDSQWLVFDVRPSGASFTGKTIER VNVHTGDVEVIYRAVQGAHVGVVTVHPADNHYVFIHGPENPDETWHYDFHHRRGVIAT PGGVTNLDAMDITAPYTPGALRGGSHVHVFSPNGELVSFTYNDHVLHERDPALDLRNV GVAVPYGPVTVPVQHPREYSGSYWCVLVSRTTPAPRPGSDDINRAYEEGWVGNRQIAF IGDTLSLTGKKVPELFIVDLPCHENGWKQAGDTPLTGTESTMPSPPLGVVQRRLTFTH QRVYPGLTNEPRHWVRSNPQATAIAFLMRDDNGVAQLWLISPQGGEPRQLTHHATGVQ SAFNWHPSGKWLGLVLENRIACCDAQSGRIDFLTARHDNPPSADAVVFSPDGRHVAWM EEVKGFRQLWVTETGR" misc_feature complement(4011678..4012025) /gene="yidR" /locus_tag="STM3811" /note="Protein of unknown function (DUF3748); Region: DUF3748; pfam12566" /db_xref="CDD:432640" misc_feature complement(4011003..>4011314) /gene="yidR" /locus_tag="STM3811" /note="Periplasmic component TolB of the Tol biopolymer transport system [Intracellular trafficking, secretion, and vesicular transport]; Region: TolB; COG0823" /db_xref="CDD:440585" regulatory complement(4012217..4012222) /regulatory_class="ribosome_binding_site" /gene="yidR" /locus_tag="STM3811" /note="putative RBS for yidR; RegulonDB:STMS1H003776" gene complement(4012333..4013387) /gene="ccmH" /locus_tag="STM3812" /db_xref="GeneID:1255339" CDS complement(4012333..4013376) /gene="ccmH" /locus_tag="STM3812" /note="cytochrome c-type biogenesis; similar to E. coli possible subunit of heme lyase (AAC75254.1); Blastp hit to AAC75254.1 (350 aa), 73% identity in aa 1 - 342" /codon_start=1 /transl_table=11 /product="putative heme lyase subunit" /protein_id="NP_462712.1" /db_xref="GeneID:1255339" /translation="MRLLPGMVMLMLALVISGSARATTDVMPFKDEAQEQQFRQLTEQ LRCPKCQNNSIADSNAMIATDMRRRVYDLMQEGKSRQEIIDYMVARYGNFVTYDPPLT PLTVLLWVLPLAAIVAGGWIIVARTRRRVRLRREPLPADTPVCGARAGWGVYVPGAVI ALAVGAGSYALTGSYPQVRAWQQATAQTPGLLARALDPQAQPLNEEEMARLALGLRTR LQNDAGNVEGWLMLGRTGMVLGNAGTATGAYANAYRLDPKNRDAALGYAEALTRSSDP EDNRRGGELLRRLVSRDHTDIRVLSLYAFNAFEQQRFGEAVAAWEMMLKLLPAGDARR AVIERSIRLAQEK" misc_feature complement(4013002..4013376) /gene="ccmH" /locus_tag="STM3812" /note="Cytochrome c-type biogenesis protein CcmH/NrfF [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Region: NrfF; COG3088" /db_xref="CDD:442322" misc_feature complement(order(4013227..4013229,4013236..4013238)) /gene="ccmH" /locus_tag="STM3812" /note="putative catalytic site [active]" /db_xref="CDD:319866" misc_feature complement(4012345..4012749) /gene="ccmH" /locus_tag="STM3812" /note="Cytochrome c-type biogenesis protein CcmH/NrfG [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Region: NrfG; COG4235" /db_xref="CDD:443378" misc_feature complement(4012615..4012701) /gene="ccmH" /locus_tag="STM3812" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(order(4012450..4012452,4012459..4012464, 4012471..4012476,4012483..4012485,4012561..4012566, 4012570..4012575,4012582..4012587,4012594..4012596, 4012666..4012668,4012672..4012677,4012684..4012689, 4012696..4012698)) /gene="ccmH" /locus_tag="STM3812" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature complement(4012501..4012602) /gene="ccmH" /locus_tag="STM3812" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(4012402..4012488) /gene="ccmH" /locus_tag="STM3812" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene complement(4013373..4013941) /gene="ccmG" /locus_tag="STM3813" /db_xref="GeneID:1255340" CDS complement(4013373..4013930) /gene="ccmG" /locus_tag="STM3813" /note="cytochrome c-type biogenesis; similar to E. coli disulfide oxidoreductase (in biogenesis of cytochrome c? (AAC75255.1); Blastp hit to AAC75255.1 (185 aa), 87% identity in aa 1 - 185" /codon_start=1 /transl_table=11 /product="heme lyase disulfide oxidoreductase" /protein_id="NP_462713.1" /db_xref="GeneID:1255340" /translation="MKRNVLLLPLLIFLLIAAALLWQLARNAQGDDPTNLESALTGKP VPAFRLESLETPGQYYQAEVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSAQGIRVVG LNYKDDRAKAVAWLKELGNPYALSLSDSDGMLGLDLGVYGAPETFLIDGRGIIRYRHA GDLNARVWESELKPLWDRYSREAAQ" misc_feature complement(4013376..4013930) /gene="ccmG" /locus_tag="STM3813" /note="thiol:disulfide interchange protein DsbE; Provisional; Region: PRK15412" /db_xref="CDD:185310" misc_feature complement(order(4013682..4013684,4013691..4013693)) /gene="ccmG" /locus_tag="STM3813" /note="catalytic residues [active]" /db_xref="CDD:239308" misc_feature complement(4013544..4013612) /gene="ccmG" /locus_tag="STM3813" /note="central insert [active]" /db_xref="CDD:239308" regulatory complement(4013382..4013387) /regulatory_class="ribosome_binding_site" /gene="ccmG" /locus_tag="STM3813" /note="putative RBS for ccmH; RegulonDB:STMS1H003777" gene complement(4013927..4015872) /gene="ccmF" /locus_tag="STM3814" /db_xref="GeneID:1255341" CDS complement(4013927..4015858) /gene="ccmF" /locus_tag="STM3814" /note="similar to E. coli cytochrome c-type biogenesis protein (AAC75256.1); Blastp hit to AAC75256.1 (647 aa), 85% identity in aa 1 - 646" /codon_start=1 /transl_table=11 /product="cytochrome c-type biogenesis protein" /protein_id="NP_462714.1" /db_xref="GeneID:1255341" /translation="MMPEYGHALLCLALGVALLLSVYPLWGVARGDARMMASAGVFAW LLFICVAGAFFVLVHAFVVNDFTVAYVAGNSNTQLPVWYRVAATWGAHEGSLLLWVLL MSGWTLAVAVFSRQVPADIVARVLAVMGMVCAGFLAFILFTSGPFARTLPAFPVEGRD LNPLLQDPGLIFHPPLLYMGYVGFSVAFAFAIAALLSGRLDSAFTRFARPWTLAAWVF LTLGIVLGSAWAYYELGWGGWWFWDPVENASFMPWLAGTALLHSLAVTEQRAGFKAWT LLLSICAFSLCLLGTFLVRSGVLVSVHAFASDPARGMFILAFMVLVTGGSLLLFAVRG HRVRSRVNNALWSRESLLLGNNVLLMAAMLVVLLGTLLPLVHKQLGLGSISVGEPFFN TMFTWLMVPFALLLGVGPLVRWGRDRPRNIRTLLLTALVSTLVLSVLLPWLLEDKIIA MTAVGMAMACWIAVLAVAEAVQRVSRGTKTSLSYWGMVAAHLGLAVTITGIAFSQNYS VERDVRMRAGDSVTIHDYRFTFREVRDITGPNYRGGVALIGVTRHGEPEAVLHAEKRL YNTSRMVMTEAAIDGGLTRDLYAALGEELDNGAWAVRLYYKPFVRWIWAGGLLMALGG LLCLADPRYRRRKPLPEAG" misc_feature complement(4013933..4015855) /gene="ccmF" /locus_tag="STM3814" /note="Cytochrome c biogenesis protein CcmF [Energy production and conversion, Posttranslational modification, protein turnover, chaperones]; Region: CcmF; COG1138" /db_xref="CDD:440753" regulatory complement(4013936..4013941) /regulatory_class="ribosome_binding_site" /gene="ccmG" /locus_tag="STM3813" /note="putative RBS for ccmG; RegulonDB:STMS1H003778" gene complement(4015855..4016345) /gene="ccmE" /locus_tag="STM3815" /db_xref="GeneID:1255342" CDS complement(4015855..4016334) /gene="ccmE" /locus_tag="STM3815" /note="cytochrome c-type biogenesis protein; similar to E. coli cytochrome c biogenesis, possible subunit of a heme lyase (AAC75257.1); Blastp hit to AAC75257.1 (159 aa), 82% identity in aa 1 - 159" /codon_start=1 /transl_table=11 /product="periplasmic heme-dependent peroxidase" /protein_id="NP_462715.1" /db_xref="GeneID:1255342" /translation="MNLRRKNRLWVVCAVLAGLGLTTALVLYALRANIDLFYTPGEIL YGKRETQQLPAAGQRLRVGGMVMPGSVRRDPDSLKVNFSLYDAEGSVTVSYEGILPDL FREGQGVVVQGTLEKGNHVLAHEVLAKHDENYTPPEVEKAMQENHRRPQRADKDTSS" misc_feature complement(4015858..4016334) /gene="ccmE" /locus_tag="STM3815" /note="cytochrome c maturation protein CcmE; Region: PRK13150" /db_xref="CDD:139376" regulatory complement(4015867..4015872) /regulatory_class="ribosome_binding_site" /gene="ccmE" /locus_tag="STM3815" /note="putative RBS for ccmF; RegulonDB:STMS1H003779" gene complement(4016331..4016555) /gene="ccmD" /locus_tag="STM3816" /db_xref="GeneID:1255343" CDS complement(4016331..4016543) /gene="ccmD" /locus_tag="STM3816" /note="cytochrome c-type biogenesis protein; similar to E. coli heme exporter protein C (AAC75258.1); Blastp hit to AAC75258.1 (69 aa), 77% identity in aa 1 - 69" /codon_start=1 /transl_table=11 /product="heme exporter protein C" /protein_id="NP_462716.1" /db_xref="GeneID:1255343" /translation="MSPAFSSWSDFFAMGGYAFFVWLAVAMTVAPLALLALHTVLQRR AILRGVAQQRAREARMRAAQAQQEAA" misc_feature complement(<4016388..4016537) /gene="ccmD" /locus_tag="STM3816" /note="Heme exporter protein D [Intracellular trafficking, secretion, and vesicular transport]; Region: CcmD; COG3114" /db_xref="CDD:442348" regulatory complement(4016340..4016345) /regulatory_class="ribosome_binding_site" /gene="ccmD" /locus_tag="STM3816" /note="putative RBS for ccmE; RegulonDB:STMS1H003780" gene complement(4016540..4017297) /gene="ccmC" /locus_tag="STM3817" /db_xref="GeneID:1255344" CDS complement(4016540..4017277) /gene="ccmC" /locus_tag="STM3817" /note="cytochrome c-type biogenesis protein; similar to E. coli heme exporter protein C (AAC75259.1); Blastp hit to AAC75259.1 (245 aa), 86% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="ABC superfamily (membrane) heme exporter protein" /protein_id="NP_462717.1" /db_xref="GeneID:1255344" /translation="MWKTLHQLAAPPRLYQICGRLVPWLAAAGIIVLATGWVRGFGFA PADYQQGEGYRIMYLHVPAAIWSMGIYAAMAVAAFTGLVWQMKMASLAVAAMAPVGAV YTFIALVTGAAWGKPMWGTWWVWDARLTSELVLLFLYAGVIALWHAFDDRKMAGRAAG ILVLVGVVNLPVIHYSVEWWNTLHQGSTRMQQSIDPAMRSPLRWAIAGYLLLFMTLSL MRMRNLILLMEKRRPWVSELILKRGHR" misc_feature complement(4016603..4017145) /gene="ccmC" /locus_tag="STM3817" /note="heme exporter protein CcmC; Region: ccmC; TIGR01191" /db_xref="CDD:273492" regulatory complement(4016550..4016555) /regulatory_class="ribosome_binding_site" /gene="ccmD" /locus_tag="STM3816" /note="putative RBS for ccmD; RegulonDB:STMS1H003781" regulatory complement(4017292..4017297) /regulatory_class="ribosome_binding_site" /gene="ccmC" /locus_tag="STM3817" /note="putative RBS for ccmC; RegulonDB:STMS1H003782" gene complement(4017329..4018004) /gene="ccmB" /locus_tag="STM3818" /db_xref="GeneID:1255345" CDS complement(4017329..4017988) /gene="ccmB" /locus_tag="STM3818" /note="ABC superfamily (membrane); cytochrome c-type biogenesis protein; similar to E. coli heme exporter protein B, cytochrome c-type biogenesis protein (AAC75260.1); Blastp hit to AAC75260.1 (220 aa), 84% identity in aa 2 - 220" /codon_start=1 /transl_table=11 /product="heme exporter protein" /protein_id="NP_462718.1" /db_xref="GeneID:1255345" /translation="MMWRVFCLELRVAFRHGADIAGPLWFFLMVITLFPLSVGPQPQL LARIAPGIIQVAALLASLLALERLFRDDLQDGSLEQLMLLPVPLPAVVLAKVLAHWAV TGLPLIMLSPLVALLLGMDVYGWKIMALTLLLGTPALGFLAAPGVALTAGLRRGGVLL GILVLPLSVPVLIFAAAAMDAASMHLPADGYLAVLGALLAGSATLSPFATAAALRLSV Q" misc_feature complement(4017344..4017976) /gene="ccmB" /locus_tag="STM3818" /note="heme exporter protein CcmB; Region: ccmB; TIGR01190" /db_xref="CDD:200083" gene complement(4017985..4018602) /gene="ccmA" /locus_tag="STM3819" /db_xref="GeneID:1255346" CDS complement(4017985..4018602) /gene="ccmA" /locus_tag="STM3819" /note="ABC superfamily (atp_bind); cytochrome c-type biogenesis protein; similar to E. coli ATP binding protein of heme exporter A (AAC75261.1); Blastp hit to AAC75261.1 (205 aa), 79% identity in aa 1 - 200" /codon_start=1 /transl_table=11 /product="heme exporter protein" /protein_id="NP_462719.1" /db_xref="GeneID:1255346" /translation="MLEARDLYCERDERTLFRGLSFTVDAGEWVQVTGGNGAGKTTLL RLLTGLARPDGGEVYWQGEPLRRVRDSFHRSLLWIGHQPGIKTRLTARENLHFFHPGD GARLPEALAQAGLAGFEDVPVAQLSAGQQRRVALARLWLTRAALWVLDEPFTAIDVNG VARLTRRMAAHTAQGGMVILTTHQPLPGAADTVRRLALTGGGAGL" misc_feature complement(4018003..4018602) /gene="ccmA" /locus_tag="STM3819" /note="cytochrome c biogenesis heme-transporting ATPase CcmA; Region: PRK13538" /db_xref="CDD:184125" regulatory complement(4017999..4018004) /regulatory_class="ribosome_binding_site" /gene="ccmA" /locus_tag="STM3819" /note="putative RBS for ccmB; RegulonDB:STMS1H003783" gene complement(4018608..4020020) /locus_tag="STM3820" /db_xref="GeneID:1255347" CDS complement(4018608..4020008) /locus_tag="STM3820" /EC_number="1.11.1.5" /note="similar to E. coli putative cytochrome C peroxidase (AAC76543.1); Blastp hit to AAC76543.1 (465 aa), 82% identity in aa 2 - 463" /codon_start=1 /transl_table=11 /product="putative cytochrome c peroxidase" /protein_id="NP_462720.1" /db_xref="GeneID:1255347" /translation="MKKITLYATTVITVGLLCYLGLSGYVWYYDKQRSKKSDVQASVV GENNKILGYFREKGCDYCHTPSAELPFYSSFPVAKQLMDYDIQLGYKSFNLEAVRAAL IADTPVPQSELNKIEWVMQHQTMPPTRYVALHWAGGVSDKERTDILNWIADQRERNYA SADTDPAHRNEPVQPIPRNIPVDAKKVDLGFRLYHDERLSGDSTISCAHCHALNAGGV DGRKTSIGVGGAVGPINAPTVFNSVFNIEQFWDGRAATLQEQAGGPPLNPIEMASKSW DEIISKLDKDPVLKKDFQAVYPQGFTGENITDAIAEFEKTLITPDSAFDKWLRGDENA LTAQQKHGYQLFKENKCATCHGGIILGGRSFEPLGLKRDFNFGEITAADIGRMNVTKE VRDKLRQKVPGLRNVALTAPYFHRGDVPTLDGAVKLMLRYQVGTDLPQNDIDDIVAFL ESLTGVYTPYQPEYAQ" misc_feature complement(4019550..4019954) /locus_tag="STM3820" /note="Haem-binding domain; Region: Haem_bd; pfam14376" /db_xref="CDD:464158" misc_feature complement(4018644..4019459) /locus_tag="STM3820" /note="Cytochrome c peroxidase [Posttranslational modification, protein turnover, chaperones]; Region: MauG; COG1858" /db_xref="CDD:441463" regulatory complement(4020015..4020020) /regulatory_class="ribosome_binding_site" /locus_tag="STM3820" /note="putative RBS for STM3820; RegulonDB:STMS1H003784" gene complement(4020198..4020843) /gene="torD" /locus_tag="STM3821" /db_xref="GeneID:1255348" CDS complement(4020198..4020830) /gene="torD" /locus_tag="STM3821" /note="similar to E. coli part of trimethylamine-N-oxide oxidoreductase (AAC74083.1); Blastp hit to AAC74083.1 (199 aa), 63% identity in aa 4 - 195" /codon_start=1 /transl_table=11 /product="cytoplasmic chaperone which interacts with TorA" /protein_id="NP_462721.1" /db_xref="GeneID:1255348" /translation="MIKQPALAQEQYACVYAWLALLFFREVDDEGLIQLQSAEIADWL ALLKRQPALAASVALLEQKIAALSLRQDAQLELAADFCGLFLMTDKKSALPYASQYPQ QEPGMIKHLLLEAGMEVNDDFKEPTDHLAIYLELLSHLHFSLGESFQQRRMNKLRQKT LSSLLEWLPEFTNNCLKHDPYGFYAALSQLLLAIVRFDDGKEDLSIVAAE" misc_feature complement(4020222..4020827) /gene="torD" /locus_tag="STM3821" /note="chaperone protein TorD; Validated; Region: torD; PRK04976" /db_xref="CDD:235326" gene complement(4020823..4023388) /gene="torA" /locus_tag="STM3822" /db_xref="GeneID:1255349" CDS complement(4020823..4023375) /gene="torA" /locus_tag="STM3822" /EC_number="1.6.6.9" /note="similar to E. coli trimethylamine N-oxide reductase subunit (AAC74082.1); Blastp hit to AAC74082.1 (848 aa), 90% identity in aa 1 - 845" /codon_start=1 /transl_table=11 /product="trimethylamine N-oxide reductase subunit" /protein_id="NP_462722.1" /db_xref="GeneID:1255349" /translation="MKNKDSLHVSRRRFLAQLGGLTVAGMLGPSLLTPRSARAADAVA PGAATKEGILTGSHWGAIRATVVDGRFVAAKPFEQDKYPSKMIAGLPDHVHNAARIRY PMVRVDWMRKGHQSDTSQRGDNRFVRVSWDEALDLFYQELERVQKTYGPSALLTASGW QSTGMFHNASGMLARAIALHGNSVSTGGDYSTGAAQVILPRVVGSMEVYEQQTSWPLV LQNSKTIVLWGSDMVKNQQANWWCPDHDVYQYYEQLKEKVASGAISVISIDPVVTSTH DYLGRDKVKHIAINPQTDVPLQLALAHTLYSEKLYDKNFLDNYCVGFDQFLPYLLGEK DGQPKDAAWAEKLCGIDADTIRALARQMAGDRTQIIAGWCVQRMQHGEQWSWMVVVLA AMLGQIGLPGGGFGFGWHYNGAGTPGRKGIILSGFSGSTTVPPVHDSTDYKGYSSTIP IARFMDAILEPGKIINWNGKSVKLPPLKMCVFAGTNPFHRHQQINRIIEGWRKLETVI AIDNQWTSTCRFADIVLPATTQFERNDLDQFGNHSNRGIIAMKQVVSPQFEARNDFDI FRDLCRRFNREAAFTEGLDEMGWLKRIWQEGSQQGKGRGIHLPIFEVFWNQQEYIEFD HPQMFVRHQAFREDPDLEPLGTPSGLIEIYSKTIADMQYDDCQGHPMWFEKIERSHGG PGSQRWPLHLQSVHPDFRLHSQLCESETLRQQYAVGGKEPVFINPQDASARGIRNGDI VRVFNARGQVLAGAVVSDRYAPGVARIHEGAWYDPDKGGDLNALCKYGNPNVLTLDIG TSQLAQATSAHTTLVEIEKYTGPMDNVTAFNGPVEMVAQCEYVPASQGNPHD" misc_feature complement(4020868..4023351) /gene="torA" /locus_tag="STM3822" /note="trimethylamine-N-oxide reductase TorA; Region: PRK15102" /db_xref="CDD:237909" regulatory complement(4020838..4020843) /regulatory_class="ribosome_binding_site" /gene="torD" /locus_tag="STM3821" /note="putative RBS for torD; RegulonDB:STMS1H003785" gene complement(4023365..4024615) /gene="torC" /locus_tag="STM3823" /db_xref="GeneID:1255350" CDS complement(4023365..4024549) /gene="torC" /locus_tag="STM3823" /note="cytochrome c-type subunit; also has activity as negativer regulator of tor operon; similar to E. coli trimethylamine N-oxide reductase, cytochrome c-type subunit (AAC74081.1); Blastp hit to AAC74081.1 (390 aa), 90% identity in aa 1 - 388" /codon_start=1 /transl_table=11 /product="trimethylamine N-oxide reductase" /protein_id="NP_462723.1" /db_xref="GeneID:1255350" /translation="MRKLWRALLRPSARWSILALVIVGIVIGVALIVLPHVGIKLTST TEFCVSCHSMQPVYQEYKQSVHFQNASGVRAECHDCHIPPDIPGMVKRKLEASNDLYQ TFIAHSIDTPEKFEAKRAELAEREWARMKENNSATCRSCHNYDAMDHAKQNPEAARQM KIAAKENQSCIDCHKGIAHQLPDMSSGFRKQFDELRASASTHNDGDTLYSLDIKPIYA AKGDKEPAGSLLPASEVKVLKRDGDWLQVQIEGWTETDGRQRVLTQLPGKRIFVASIR GDVQQHVKTLEETTVAATNTQWSKLQATAWMQKGDMVNDIKPIWAYADSLYNGTCNQC HGAPDKAHFDANGWIGTLNGMIGFTSLDKREERTLLKYLQMNASDTTNTPHSDKGEHN EK" misc_feature complement(4023374..4024549) /gene="torC" /locus_tag="STM3823" /note="pentaheme c-type cytochrome TorC; Region: PRK15032" /db_xref="CDD:184992" regulatory complement(4023383..4023388) /regulatory_class="ribosome_binding_site" /gene="torC" /locus_tag="STM3823" /note="putative RBS for torA; RegulonDB:STMS1H003786" regulatory complement(4024555..4024560) /regulatory_class="ribosome_binding_site" /gene="torC" /locus_tag="STM3823" /note="putative RBS for torC; RegulonDB:STMS1H003787" regulatory complement(4024591..4024599) /regulatory_class="minus_10_signal" /gene="torC" /locus_tag="STM3823" /note="putative -10_signal for torC; RegulonDB:STMLTH004616" protein_bind complement(4024599..4024607) /gene="torC" /locus_tag="STM3823" /note="putative binding site for TorR, RegulonDB: STMS1H000373" /bound_moiety="TorR" regulatory complement(4024607..4024615) /regulatory_class="minus_35_signal" /gene="torC" /locus_tag="STM3823" /note="putative -35_signal for torC; RegulonDB:STMLTH004616" protein_bind complement(4024618..4024628) /note="putative binding site for TorR, RegulonDB: STMS1H000372" /bound_moiety="TorR" protein_bind complement(4024638..4024650) /note="putative binding site for TorR, RegulonDB: STMS1H000371" /bound_moiety="TorR" gene 4024679..4025371 /gene="torR" /locus_tag="STM3824" /db_xref="GeneID:1255351" CDS 4024679..4025371 /gene="torR" /locus_tag="STM3824" /note="regulates tor operon (TorR family); similar to E. coli response transcriptional regulator for torA (sensor TorS) (AAC74080.1); Blastp hit to AAC74080.1 (230 aa), 81% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="response regulator in multi-component regualtory system wtih TorS (sensory kinase) and TorT (periplasmic sensor)" /protein_id="NP_462724.1" /db_xref="GeneID:1255351" /translation="MSHHIVIVEDEPVTQARLQAYFEQEGYRVSVTDSGAGLRDIMEH EHVSLILLDINLPDENGLMLTRALRERSTVGIILVTGRCDQIDRIVGLEMGADDYVTK PLELRELVVRVKNLLWRIDLARPTPQNASENCYMFSGYCLNVMNHTLEHNGEAIKLTR AEYELLLAFVTNPGKVLHRERLLRMLSARRVETPDLRTIDVLVRRLRHKITPELLVTQ HGEGYFLASEVY" misc_feature 4024679..4025338 /gene="torR" /locus_tag="STM3824" /note="two-component system response regulator TorR; Region: PRK10766" /db_xref="CDD:182711" protein_bind complement(4024706..4024712) /note="putative binding site for TorR, RegulonDB: STMS1H000374" /bound_moiety="TorR" gene complement(4025344..4026398) /gene="torT" /locus_tag="STM3825" /db_xref="GeneID:1255352" CDS complement(4025344..4026384) /gene="torT" /locus_tag="STM3825" /note="regulates tor operon; similar to E. coli part of regulation of tor operon, periplasmic (AAC74079.1); Blastp hit to AAC74079.1 (342 aa), 65% identity in aa 1 - 342" /codon_start=1 /transl_table=11 /product="periplasmic sensor in multi-comopnent regulatory system with TorS (sensory kinase) and TorR (regulator)" /protein_id="NP_462725.1" /db_xref="GeneID:1255352" /translation="MRALISFFFLIIIVSNIETASAETGLLHWTRADRAIPWRQTSVN ASKPWKLCALYPSLKDSYWLSVNYGMQKAAKLYGVDLKVLEANGYRQLATQQQQMMQC REWGADAILLGSSTIRFPELERYAGNVPVIEVANVIRDASVATHVGLPWFQMGYLPGR FLVQWSKGKALNVLLFPGPEEAGGSQEMVAGFRQAIKGSAINIVDIAWGDNDIEVQRN LLQEMLERHPDANVVAGSAIAAEAAMGEGRNLTTPLTIVSFYLTHQVYRGLKRGHILM ALSDQMAWQGELAITQSIKVLQGQPVPENISPPVLILTHNNADSARVRRSLSPPGFRP VYLYQYTSEAKK" misc_feature complement(4025368..4026384) /gene="torT" /locus_tag="STM3825" /note="TMAO reductase system periplasmic protein TorT; Provisional; Region: PRK10936" /db_xref="CDD:236801" regulatory complement(4026393..4026398) /regulatory_class="ribosome_binding_site" /gene="torT" /locus_tag="STM3825" /note="putative RBS for torT; RegulonDB:STMS1H003788" gene 4026453..4029199 /gene="torS" /locus_tag="STM3826" /db_xref="GeneID:1255353" regulatory 4026453..4026458 /regulatory_class="ribosome_binding_site" /gene="torS" /locus_tag="STM3826" /note="putative RBS for torS; RegulonDB:STMS1H003789" CDS 4026464..4029199 /gene="torS" /locus_tag="STM3826" /EC_number="2.7.3.-" /note="regulates tor operon; similar to E. coli sensor protein torS (regulator TorR) (AAC74078.1); Blastp hit to AAC74078.1 (904 aa), 62% identity in aa 1 - 896" /codon_start=1 /transl_table=11 /product="sensory kinase in multi-component regulatory system with TorR (regulator) and TorT (periplasmic sensor)" /protein_id="NP_462726.1" /db_xref="GeneID:1255353" /translation="MSTPSLTRRLWLAFALMAALTLLSTVIGWISLRVISQVEQTNTQ ALLPTMNMARQLSEASAYELFSAQNLTNADSEGVWLAQGKMLKAQSLKINHLLQALSE QGFNTSAIARQEKEIAQTLGQQGTLVGEILTLRAQQQQLSRQIAEAAESIAAQAHGQA NNAATSAGATQAGIYDLIESGKGDQAERALDRLIDIDLEYVNQMNELRVNALRFKQLI VTLKDAQGLSDAEDTDEKLNQLVKILSRRQQRIEDPTVRAQIADALETINQYTTLVTL FRKENAIRDQLQTLMANNLFQFTRFSTEVSQLVNAIEKRNEAGLARLTHASQRGQIGL VILGILALCSLSFILWRVVYRSVSRPLAQQTQALQRLLEGDIDSPFPEAAGVSELDTI SRLMEAFRANVRKLNRHREDLAEQVRSQTAELHALVLEHRQARAEAEKANEAKSTFLA AMSHEIRTPLYGILGTVQLLADKPLMTNYRDDLQAINDSGESLLAILNDILDYSAIEV GGTNVSISEEPFEPRQLLNSALHLMHSRVQVALITDFSEQLPSTLQGDPRRIRQIVIN LLSNAAKFTDRGSIVLRTFCDDQSWFIEVEDTGCGIPEAKLTAIFKPFVQATGRRGGT GLGLAISASLAEAMGGTLTVTSTLHVGSCFRLQLPVCHSKPASKSAFREPINLNGLRL LLIEDNMLTQRITAEMLTGKGVKVSLAESANDALRCLAEGESFDVALVDFDLPDYDGL TLAQQLMSLYPAMKRIGFSAHVIDDNLRQRTAGLFCGIIQKPVPREELYRMIAHYLQG KSHNARAMLNEHQLAGDMASVGPEKLRQWVALFKDSALPLVEEIEAARAMNDDVNIKR LAHKLKSGCASLGMTQATEACRELELQPLSDIDIKTIVTQGVTALDAWIAGHPSP" misc_feature 4026470..4029196 /gene="torS" /locus_tag="STM3826" /note="hybrid sensory histidine kinase TorS; Provisional; Region: PRK11466" /db_xref="CDD:236914" gene complement(4029225..4030568) /gene="dgoT" /locus_tag="STM3827" /db_xref="GeneID:1255354" CDS complement(4029225..4030562) /gene="dgoT" /locus_tag="STM3827" /note="similar to E. coli D-galactonate transport (AAC76714.1); Blastp hit to AAC76714.1 (445 aa), 90% identity in aa 1 - 445" /codon_start=1 /transl_table=11 /product="MFS family D-galactonate transport protein" /protein_id="NP_462727.1" /db_xref="GeneID:1255354" /translation="MVSGLAMPRIWRQMTMDISVTAAQPGRRRYLTLVMIFITVVICY VDRANLAVASMHIQKEFGITKAEMGYVFSAFAWLYTLCQIPGGWFLDRIGSRLTYFIA IFGWSVATLLQGFATGLLSLIGLRAITGIFEAPAFPANNRMVTSWFPEHERASAVGFY TSGQFVGLAFLTPLLIWIQEMLSWHWVFIVTGGIGIIWSLVWFKVYQPPRLTKSLSQA ELEYIRDGGGLVDGDAPAKKEARQPLTKADWKLVFHRKLVGVYLGQFAVNSTLWFFLT WFPNYLTQEKGITALKAGFMTTVPFLAAFFGVLLSGWLADKLVKKGFSLGVARKTPII CGLLISTCIMGANYTNDPLWIMALMAIAFFGNGFASITWSLISSLAPMRLIGLTGGMF NFIGGLGGISVPLVIGYLAQSYGFAPALVYISVVALLGALSYILLVGDVKRVG" misc_feature complement(4029249..4030451) /gene="dgoT" /locus_tag="STM3827" /note="D-galactonate transporter; Region: 2A0114; TIGR00893" /db_xref="CDD:273326" regulatory complement(4030563..4030568) /regulatory_class="ribosome_binding_site" /gene="dgoT" /locus_tag="STM3827" /note="putative RBS for dgoT; RegulonDB:STMS1H003790" gene complement(4030647..4031806) /gene="dgoA" /locus_tag="STM3828" /db_xref="GeneID:1255355" CDS complement(4030647..4031795) /gene="dgoA" /locus_tag="STM3828" /EC_number="4.1.2.21" /EC_number="4.2.1.6" /note="bifunctional; similar to E. coli 2-oxo-3-deoxygalactonate 6-phosphate aldolase and galactonate dehydratase (AAC76715.1); Blastp hit to AAC76715.1 (587 aa), 92% identity in aa 206 - 587" /codon_start=1 /transl_table=11 /product="2-oxo-3-deoxygalactonate 6-phosphate aldolase" /protein_id="NP_462728.1" /db_xref="GeneID:1255355" /translation="MKITHITTYRLPPRWMFLKIETDEGVVGWGEPVIEGRARTVEAA VHEFADYLIGKDPARINDLWQVMYRAGFYRGGPIMMSAIAGIDQALWDIKGKVLNAPV WQLMGGLVRDKIKAYSWVGGDRPADVIDGIEKLRGIGFDTFKLNGCEEMGVIDNSRAV DAAVNTVAQIREAFGSEIEFGLDFHGRVSAPMAKVLIKELEPYRPLFIEEPVLAEQAE YYPRLAAQTHIPIAAGERMFSRFEFKRVLDAGGLAILQPDLSHAGGITECYKIAGMAE AYDVALAPHCPLGPIALAACLHIDFVSRNAVFQEQSMGIHYNKGAELLDFVKNKEDFS MDGGFFKPLTKPGLGVDIDEARVIELSKSAPDWRNPLWRHADGSVAEW" misc_feature complement(4030650..4031795) /gene="dgoA" /locus_tag="STM3828" /note="galactonate dehydratase; Provisional; Region: PRK14017" /db_xref="CDD:184455" regulatory complement(4031801..4031806) /regulatory_class="ribosome_binding_site" /gene="dgoA" /locus_tag="STM3828" /note="putative RBS for dgoA; RegulonDB:STMS1H003791" gene complement(4032393..4033282) /gene="dgoK" /locus_tag="STM3829" /db_xref="GeneID:1255356" CDS complement(4032393..4033271) /gene="dgoK" /locus_tag="STM3829" /EC_number="2.7.1.58" /note="similar to E. coli 2-oxo-3-deoxygalactonate kinase (AAC76716.1); Blastp hit to AAC76716.1 (292 aa), 81% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="2-oxo-3-deoxygalactonate kinase" /protein_id="NP_462729.1" /db_xref="GeneID:1255356" /translation="MTARYIAIDWGSTNLRAWLYQGDKCLESRQSEAGVTRLNGKSPD AVLAEVTTHWRDSATPVVMAGMIGSNVGWQNAPYLPVPALFSAIGEQLTAVGDNIWII PGLCVSREDNHNVMRGEETQLLGACELSPSSVYVMPGTHCKWVQTDTQQIHDFRTVMT GELHHLLLRHSLVGAGLPEQEVSGDAYAAGLERGLNSPAVLPSLFEVRASHVLGHLAR EQVSDFLSGLLIGAEVASMSESFAAQQAITLVAGPALISRYQQAFSAIGRDVSTVDGD MAFQAGIRSIAHAVAN" misc_feature complement(4032396..4033271) /gene="dgoK" /locus_tag="STM3829" /note="2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]; Region: DgoK; COG3734" /db_xref="CDD:442948" gene complement(4033268..4033968) /gene="dgoR" /locus_tag="STM3830" /db_xref="GeneID:1255357" CDS complement(4033268..4033957) /gene="dgoR" /locus_tag="STM3830" /note="GntR family; similar to E. coli regulator protein for dgo operon (AAC76718.1); Blastp hit to AAC76718.1 (128 aa), 94% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="galactonate operon transcriptional repressor" /protein_id="NP_462730.1" /db_xref="GeneID:1255357" /translation="MTLNKTDRIVITLGKQIVSGKYVPGSALPAEADLCEEFETSRNI IREVFRSLMAKRLIEMKRYRGAFIAPRNQWNYLDTDVLQWVLENDYDPRLISAMSEIR NLVEPAIARWAAERATSSDLAEIESALNDMIANNQDREAFNEADIRYHEAVLQSVHNP VLQQLNVAISSLQRAVFERTWMGDAANMPKTLQEHKALFDAIRHQDGDAAEQAALTMI ASSTRRLKEIT" misc_feature complement(4033277..4033942) /gene="dgoR" /locus_tag="STM3830" /note="DNA-binding transcriptional regulator, FadR family [Transcription]; Region: FadR; COG2186" /db_xref="CDD:441789" regulatory complement(4033277..4033282) /regulatory_class="ribosome_binding_site" /gene="dgoR" /locus_tag="STM3830" /note="putative RBS for dgoK; RegulonDB:STMS1H003792" regulatory complement(4033963..4033968) /regulatory_class="ribosome_binding_site" /gene="dgoR" /locus_tag="STM3830" /note="putative RBS for dgoR; RegulonDB:STMS1H003793" gene complement(4034218..4035074) /gene="yidA" /locus_tag="STM3831" /db_xref="GeneID:1255358" CDS complement(4034218..4035063) /gene="yidA" /locus_tag="STM3831" /note="similar to E. coli orf, hypothetical protein (AAC76720.1); Blastp hit to AAC76720.1 (270 aa), 93% identity in aa 1 - 270" /codon_start=1 /transl_table=11 /product="putative hydrolase of the HAD superfamily" /protein_id="NP_462731.1" /db_xref="GeneID:1255358" /translation="MAIKLIAIDMDGTLLLPDHTISPAVKNAIAAAREKGVNVVLTTG RPYAGVHSYLKELHMEQPGDYCITYNGALVQKAGDGSTVAQTALSYDDYRYLEKLSRE VGSHFHALDRNTLYTANRDISYYTVHESYVATIPLVFCEAEKMDPNTQFLKVMMIDEP AVLDRAIARIPAEVKEKYTVLKSAPYFLEILDKRVNKGTGVKSLVEALGIKPEEVMAI GDQENDIAMIEYAGMGVAMDNAIPSVKEVANFVTKSNLEDGVAWAIEKFVLNPDHSSG HFPAR" misc_feature complement(4034254..4035063) /gene="yidA" /locus_tag="STM3831" /note="sugar phosphate phosphatase; Provisional; Region: PRK10513" /db_xref="CDD:182509" regulatory complement(4035069..4035074) /regulatory_class="ribosome_binding_site" /gene="yidA" /locus_tag="STM3831" /note="putative RBS for yidA; RegulonDB:STMS1H003794" gene 4035362..4036631 /locus_tag="STM3832" /db_xref="GeneID:1255359" regulatory 4035362..4035367 /regulatory_class="ribosome_binding_site" /locus_tag="STM3832" /note="putative RBS for STM3832; RegulonDB:STMS1H003795" CDS 4035369..4036631 /locus_tag="STM3832" /note="similar to E. coli putative transport protein (AAC75831.1); Blastp hit to AAC75831.1 (450 aa), 27% identity in aa 15 - 435" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_462732.1" /db_xref="GeneID:1255359" /translation="MSMALTAPPTRKRFLIVACLFIGIFIAYLDRVNVSVLAANEPFL AYMGIEGMPLQIGMMMTVFLAAYGIANVVLSPLGDYLGPRKAMMLCILIWTIALMIGG VATSFALIIICRILLGIGEGFYYPLQSVFIKNWFPKQERGRANAAWIVGQSVAPAIAM PFFTWWIGTHGWRSNFFLCAALGLIPLWLLWRYVADKPEQHKSISEQELAYIKAGQET ESAGSSESFMLRVKPVITNYSYWLLVLWYLCLQCLYWGMITWLPTYLKSARGFSWAEM GWLASLPFVLSIFAKAAAGVFVDKIGRSAPILMVLMFFAGVSIYFGTITEHKYMSAVL LSFAVAFCTMGTPVAWTLLQGMIPGKSISAASGVMNGVANGLSSLSPVFIGLFISITG TYTGGLLCLVFISAIAVVSALILTIKKY" misc_feature 4035405..4036613 /locus_tag="STM3832" /note="Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily; Region: MFS_ExuT_GudP_like; cd17319" /db_xref="CDD:340877" misc_feature order(4035447..4035452,4035459..4035464,4035471..4035473, 4035579..4035581,4035729..4035734,4035738..4035746, 4035753..4035755,4035813..4035815,4035822..4035827, 4035834..4035836,4036107..4036109,4036116..4036121, 4036128..4036136,4036143..4036145,4036227..4036229, 4036239..4036241,4036389..4036394,4036404..4036406, 4036416..4036418,4036464..4036466,4036473..4036478, 4036485..4036490,4036497..4036499) /locus_tag="STM3832" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340877" gene 4036637..4037838 /locus_tag="STM3833" /db_xref="GeneID:1255360" regulatory 4036637..4036642 /regulatory_class="ribosome_binding_site" /locus_tag="STM3833" /note="putative RBS for STM3833; RegulonDB:STMS1H003796" CDS 4036645..4037838 /locus_tag="STM3833" /note="muconate lactonizing enzyme family; similar to E. coli starvation sensing protein (AAC74653.1); Blastp hit to AAC74653.1 (404 aa), 28% identity in aa 18 - 385" /codon_start=1 /transl_table=11 /product="putative mandelate racemase" /protein_id="NP_462733.1" /db_xref="GeneID:1255360" /translation="MMKITSVDIIDVANDFASATSKWRPVVVKINTDEGISGFGEVGL AYGVGASAGIGMAKDLSAIIIGMDPMNNEAIWEKMLKKTFWGQGGGGIFSAAMSGIDI ALWDIKGKAWGVPLYKMLGGKSREKIRTYASQLQFGWGDGSDKDMLTEPEQYAQAALT AVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIA EMHAFTDTTSAIQFGRMIEELGIFYYEEPVMPLNPAQMKQVADKVNIPLAAGERIYWR WGYRPFLENGSLSVIQPDICTCGGITEVKKICDMAHVYDKTVQIHVCGGPISTAVALH METAIPNFVIHELHRYALLEPNTQTCKYNYLPKNGMYEVPELPGIGQELTEETMKKSP TITVK" misc_feature 4036651..4037790 /locus_tag="STM3833" /note="Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues; Region: MR_like; cd03316" /db_xref="CDD:239432" misc_feature order(4037152..4037154,4037158..4037160,4037299..4037301, 4037377..4037379,4037455..4037457,4037524..4037526, 4037605..4037607,4037680..4037682) /locus_tag="STM3833" /note="active site pocket [active]" /db_xref="CDD:239432" gene 4037946..4038849 /locus_tag="STM3834" /db_xref="GeneID:1255361" regulatory 4037946..4037951 /regulatory_class="ribosome_binding_site" /locus_tag="STM3834" /note="putative RBS for STM3834; RegulonDB:STMS1H003797" CDS 4037953..4038849 /locus_tag="STM3834" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC73855.1); Blastp hit to AAC73855.1 (338 aa), 27% identity in aa 22 - 318" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462734.1" /db_xref="GeneID:1255361" /translation="MNLTIRQFRAFLAVADLRSFTAASKYLCITQGAVSGLINEMESQ MEVSLFDRTSRVVKLSPDGEKFLPAAMRVVEEFQRAENYARDLKEIKKSLVRVVGAPL IACAFLPQIIHAFKRQHPHTHVQLIDKPMSQLQKSIMLGEADFGIGPERPLEPEIDKQ TLFTTEIALYCHPDYRLHKKTVRWEEIQSEELIAVGNESIPMISATAGVRIKPKMTVE HMATAMSLAAQCEGVVIAGTFSRHYAKSYQLATCSLTPPLRRNMNLYFHAWRAQTPAT QRFRDFLFSYVDEHHDAPANQR" misc_feature 4037965..4038144 /locus_tag="STM3834" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature 4038232..4038801 /locus_tag="STM3834" /note="TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold; Region: PBP2_LTTR_like_4; cd08440" /db_xref="CDD:176131" misc_feature order(4038277..4038282,4038286..4038291,4038298..4038300, 4038310..4038312,4038316..4038336,4038592..4038609, 4038625..4038630,4038634..4038639) /locus_tag="STM3834" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176131" gene complement(4038868..4041293) /gene="gyrB" /locus_tag="STM3835" /db_xref="GeneID:1255362" CDS complement(4038868..4041282) /gene="gyrB" /locus_tag="STM3835" /EC_number="5.6.2.2" /note="type II topoisomerase; DNA gyrase subunit B. (SW:GYRB_SALTY)" /codon_start=1 /transl_table=11 /product="DNA gyrase, subunit B" /protein_id="NP_462735.1" /db_xref="GeneID:1255362" /translation="MSNSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVV DNAIDEALAGHCKDIVVTIHADNSVSVTDDGRGIPTGIHPEEGVSAAEVIMTVLHAGG KFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQRDGKIHRQIYEHGVPQAPLAVTGDT DKTGTMVRFWPSHETFTNVTEFEYEILAKRLRELSFLNSGVSIRLRDKRDGKEDHFHY EGGIKAFVEYLNKNKTPIHPNIFYFSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQR DGGTHLAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSS QTKDKLVSSEVKSAVEQQMNELLSEYLLENPSDAKIVVGKIIDAARAREAARRAREMT RRKGALDLAGLPGKLADCQERDPALSELYLVEGDSAGGSAKQGRNRKNQAILPLKGKI LNVEKARFDKMLSSQEVATLITALGCGIGRDEYNPDKLRYHSIIIMTDADVDGSHIRT LLLTFFYRQMPEIVERGHVYIAQPPLYKVKKGKQEQYIKDDEAMDQYQISIALDGATL HANAHAPALSGEALEKLVSEYNATQKMIGRMERRFPKALLKELVYQPTLTEADLSDEQ TVTRWVNALITELNEKEQHGSQWKFDVHTNTEQNLFEPIVRVRTHGVDTDYPLDHEFV TGAEYRRICTLGEKLRGLIEEDAFIERGERRQPVTSFEQALEWLVKESRRGLAIQRYK GLGEMNPDQLWETTMDPESRRMLRVTVKDAIAADQLFTTLMGDAVEPRRAFIEENALK AANIDI" misc_feature complement(4038871..4041282) /gene="gyrB" /locus_tag="STM3835" /note="DNA gyrase subunit B; Provisional; Region: gyrB; PRK14939" /db_xref="CDD:237860" regulatory complement(4041288..4041293) /regulatory_class="ribosome_binding_site" /gene="gyrB" /locus_tag="STM3835" /note="putative RBS for gyrB; RegulonDB:STMS1H003798" gene complement(4041311..4042404) /gene="recF" /locus_tag="STM3836" /db_xref="GeneID:1255363" CDS complement(4041311..4042384) /gene="recF" /locus_tag="STM3836" /note="RECF protein. (SW:RECF_SALTY)" /codon_start=1 /transl_table=11 /product="gap repair protein" /protein_id="NP_462736.1" /db_xref="GeneID:1255363" /translation="MSLTRLLIKDFRNIENADLALSPGFNFLVGANGSGKTSVLEAIY TLGHGRAFRSLQPGRVIRHEQEAFVLHGRLQSEERETSIGLTKDKQGDSKVRIDGTDG HKIAELAHLMPMQLITPEGFTLLNGGPKYRRAFLDWGCFHNEAGFFTAWSNLKRLLKQ RNAALRQVSRYEQLRPWDKELIPLAEQISTWRAEYSSAIAQDMADTCQQFLPEFSLTF SFQRGWEKETDYADVLERSFERDRMLTYTAHGPHKADFRIRADGAPVEDTLSRGQLKL LMCALRLAQGEFLTRESGRRCLYLIDDFASELDDARRGLLASRLKATQSQVFVSAISA EHVIDMSDENSKMFTVEKGKITD" misc_feature complement(4041320..4042384) /gene="recF" /locus_tag="STM3836" /note="recF protein; Region: recf; TIGR00611" /db_xref="CDD:273173" regulatory complement(4042399..4042404) /regulatory_class="ribosome_binding_site" /gene="recF" /locus_tag="STM3836" /note="putative RBS for recF; RegulonDB:STMS1H003799" gene complement(4042532..4043632) /gene="dnaN" /locus_tag="STM3837" /db_xref="GeneID:1255364" CDS complement(4042532..4043632) /gene="dnaN" /locus_tag="STM3837" /EC_number="2.7.7.7" /note="DNA polymerase iii, beta chain. (SW:DP3B_SALTY)" /codon_start=1 /transl_table=11 /product="DNA polymerase III, beta-subunit" /protein_id="NP_462737.1" /db_xref="GeneID:1255364" /translation="MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSL TGTDLEMEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGDRMLVRSG RSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLF ETEGSELRTVATDGHRLAVCSMPLEASLPSHSVIVPRKGVIELMRMLDGGENPLRVQI GSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNE KFRGVRLYVSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCE TVRIMLTDSVSSVQIEDAASQSAAYVVMPMRL" misc_feature complement(4042535..4043632) /gene="dnaN" /locus_tag="STM3837" /note="DNA polymerase III subunit beta; Validated; Region: PRK05643" /db_xref="CDD:235541" misc_feature complement(order(4043039..4043041,4043393..4043395, 4043414..4043416,4043561..4043563)) /gene="dnaN" /locus_tag="STM3837" /note="putative DNA binding surface [nucleotide binding]; other site" /db_xref="CDD:238082" misc_feature complement(order(4042721..4042726,4042817..4042819, 4043318..4043320,4043324..4043326,4043402..4043404, 4043411..4043413)) /gene="dnaN" /locus_tag="STM3837" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238082" misc_feature complement(order(4042538..4042549,4042673..4042675, 4043102..4043113,4043117..4043119)) /gene="dnaN" /locus_tag="STM3837" /note="beta-clamp/clamp loader binding surface [active]" /db_xref="CDD:238082" misc_feature complement(order(4042538..4042549,4042664..4042666, 4042745..4042750,4042787..4042789,4042892..4042894, 4043108..4043113,4043117..4043119)) /gene="dnaN" /locus_tag="STM3837" /note="beta-clamp/translesion DNA polymerase binding surface [active]" /db_xref="CDD:238082" gene complement(4043637..4045114) /gene="dnaA" /locus_tag="STM3838" /db_xref="GeneID:1255365" CDS complement(4043637..4045037) /gene="dnaA" /locus_tag="STM3838" /note="chromosomal replication initiator protein DNAA. (SW:DNAA_SALTY)" /codon_start=1 /transl_table=11 /product="DNA replication initiator protein" /protein_id="NP_462738.1" /db_xref="GeneID:1255365" /translation="MSLSLWQQCLARLQDELPATEFSMWIRPLQAELSDNTLALYAPN RFVLDWVRDKYLNNINGLLNTFCGADAPQLRFEVGTKPVTQTLKTPVHNVVAPAQTTT AQPQRVAPAARSGWDNVPAPAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQVADNP GGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKPNAKVVYMHSERFVQDMVKALQNNAI EEFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEGNQQIILTSDRYPKEING VEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRSNVRE LEGALNRVIANANFTGRAITIDFVREALRDLLALQEKLVTIDNIQKTVAEYYKIKIAD LLSKRRSRSVARPRQMAMALAKELTNHSLPEIGDAFGGRDHTTVLHACRKIEQLREES HDIKEDFSNLIRTLSS" misc_feature complement(4043646..4045022) /gene="dnaA" /locus_tag="STM3838" /note="chromosomal replication initiator protein DnaA; Region: DnaA; TIGR00362" /db_xref="CDD:273037" regulatory complement(4045044..4045049) /regulatory_class="ribosome_binding_site" /gene="dnaA" /locus_tag="STM3838" /note="putative RBS for dnaA; RegulonDB:STMS1H003800" regulatory complement(4045090..4045098) /regulatory_class="minus_10_signal" /gene="dnaA" /locus_tag="STM3838" /note="putative -10_signal for dnaA; RegulonDB:STMLTH004617" regulatory complement(4045106..4045114) /regulatory_class="minus_35_signal" /gene="dnaA" /locus_tag="STM3838" /note="putative -35_signal for dnaA; RegulonDB:STMLTH004617" gene 4045639..4045838 /gene="rpmH" /locus_tag="STM3839" /db_xref="GeneID:1255366" regulatory 4045639..4045647 /regulatory_class="minus_35_signal" /gene="rpmH" /locus_tag="STM3839" /note="putative -35_signal for rpmH; RegulonDB:STMLTH004618" regulatory 4045666..4045674 /regulatory_class="minus_10_signal" /gene="rpmH" /locus_tag="STM3839" /note="putative -10_signal for rpmH; RegulonDB:STMLTH004618" regulatory 4045683..4045688 /regulatory_class="ribosome_binding_site" /gene="rpmH" /locus_tag="STM3839" /note="putative RBS for rpmH; RegulonDB:STMS1H003801" CDS 4045698..4045838 /gene="rpmH" /locus_tag="STM3839" /note="similar to E. coli 50S ribosomal subunit protein L34 (AAC76726.1); Blastp hit to AAC76726.1 (46 aa), 100% identity in aa 1 - 46" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L34" /protein_id="NP_462739.1" /db_xref="GeneID:1255366" /translation="MKRTFQPSVLKRNRSHGFRARMATKNGRQVLARRRAKGRARLTV SK" misc_feature 4045698..4045829 /gene="rpmH" /locus_tag="STM3839" /note="Ribosomal protein L34 [Translation, ribosomal structure and biogenesis]; Region: RpmH; COG0230" /db_xref="CDD:440000" gene 4045855..4046214 /gene="rnpA" /locus_tag="STM3840" /db_xref="GeneID:1255367" CDS 4045855..4046214 /gene="rnpA" /locus_tag="STM3840" /EC_number="3.1.26.5" /note="protein component (protein C5); processes tRNA and 4.5S RNA; similar to E. coli RNase P, protein component; protein C5; processes tRNA, 4.5S RNA (AAC76727.1); Blastp hit to AAC76727.1 (119 aa), 97% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="RNase P" /protein_id="NP_462740.1" /db_xref="GeneID:1255367" /translation="MVKLAFPRELRLLTPAHFTFVFQQPQRAGTPQITILGRLNSLGH PRIGLTVAKKNVRRAHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALS EALEKLWRRHCRLARGS" misc_feature 4045864..4046202 /gene="rnpA" /locus_tag="STM3840" /note="ribonuclease P protein component, eubacterial; Region: rnpA; TIGR00188" /db_xref="CDD:211560" gene 4046173..4046435 /locus_tag="STM3841" /db_xref="GeneID:1255368" regulatory 4046173..4046178 /regulatory_class="ribosome_binding_site" /locus_tag="STM3841" /note="putative RBS for STM3841; RegulonDB:STMS1H003802" CDS 4046178..4046435 /locus_tag="STM3841" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462741.1" /db_xref="GeneID:1255368" /translation="MAPPLSPGSRVLIALIRVYQRLISPLLGPHCRFTPTCSSYGIEA LRRFGVIKGSWLTVKRVLKCHPLHPGGDDPVPPGPFDTREH" misc_feature 4046193..4046402 /locus_tag="STM3841" /note="Membrane-anchored protein YidD, putatitve component of membrane protein insertase Oxa1/YidC/SpoIIIJ [Cell wall/membrane/envelope biogenesis]; Region: YidD; COG0759" /db_xref="CDD:440522" gene 4046425..4048084 /gene="yidC" /locus_tag="STM3842" /db_xref="GeneID:1255369" regulatory 4046425..4046430 /regulatory_class="ribosome_binding_site" /locus_tag="STM3841" /note="putative RBS for yidC; RegulonDB:STMS1H003803" CDS 4046438..4048084 /gene="yidC" /locus_tag="STM3842" /note="similar to E. coli 60 KD inner-membrane protein (AAC76728.1); Blastp hit to AAC76728.1 (548 aa), 95% identity in aa 1 - 548" /codon_start=1 /transl_table=11 /product="putative preprotein translocase subunit YidC" /protein_id="NP_462742.1" /db_xref="GeneID:1255369" /translation="MDSQRNLLVIALLFVSFMIWQAWEQDKNPQPQTQQTTQTTTTAA GSAADQGVPASGQGKMITVKTDVLDLTINTRGGDVEQALLPAYPKELGSNEPFQLLET TPQFIYQAQSGLTGRDGPDNPANGPRPLYNVEKEAFVLADGQNELQVPMTYTDAAGNT FTKTFVFKRGDYAVNVNYSVQNAGEKPLEVSTFGQLKQSVNLPPHRDTGSSNFALHTF RGAAYSTPDEKYEKYKFDTIADNENLNVSSKGGWVAMLQQYFATAWIPRNDGTNNFYT ANLGNGIVAIGYKAQPVLVQPGQTGAMTSTLWVGPEIQDKMAAVAPHLDLTVDYGWLW FISQPLFKLLKWIHSFVGNWGFSIIIITFIVRGIMYPLTKAQYTSMAKMRMLQPKIQA MRERLGDDKQRQSQEMMALYKAEKVNPLGGCFPLIIQMPIFLALYYMLMGSIELRHAP FALWIHDLSAQDPYYILPILMGVTMFFIQKMSPTTVTDPMQQKIMTFMPVIFTVFFLW FPSGLVLYYIVSNLVTIIQQQLIYRGLEKRGLHSREKKKS" misc_feature 4046438..4048081 /gene="yidC" /locus_tag="STM3842" /note="membrane protein insertase; Provisional; Region: PRK01318" /db_xref="CDD:234942" gene 4048226..4049590 /gene="trmE" /locus_tag="STM3843" /db_xref="GeneID:1255370" CDS 4048226..4049590 /gene="trmE" /locus_tag="STM3843" /note="similar to E. coli GTP-binding protein in thiophene and furan oxidation (AAC76729.1); Blastp hit to AAC76729.1 (454 aa), 94% identity in aa 1 - 454" /codon_start=1 /transl_table=11 /product="GTPase for tRNA modification and thiophene and furan oxidation" /protein_id="NP_462743.1" /db_xref="GeneID:1255370" /translation="MSHNDTIVAQATPPGRGGVGILRISGLKARDVAQEVLGKLPKPR YADYLPFKDVDGSALDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTLPG VRIARPGEFSERAFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLV EALTHLRIYVEAAIDFPDEEIDFLSDGKIEAQLNGVIADLDAVRTEARQGSLLREGMK VVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLRD ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPADIWPDFIARLPKNLPITVVR NKADITGETLGISEVNGHSLVRLSARTGEGIDVLRNHLKQSMGFDTNMEGGFLARRRH LQALAEAAEHLEQGKAQLLGAWAGELLAEELRLAQQSLSEITGEFTSDDLLGRIFSSF CIGK" misc_feature 4048226..4049587 /gene="trmE" /locus_tag="STM3843" /note="tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE; Region: trmE; PRK05291" /db_xref="CDD:235392" misc_feature 4048892..4048915 /gene="trmE" /locus_tag="STM3843" /note="G1 box; other site" /db_xref="CDD:206727" misc_feature order(4048901..4048903,4048907..4048918,4049228..4049233, 4049237..4049239,4049297..4049305) /gene="trmE" /locus_tag="STM3843" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:206727" misc_feature 4048937..4048987 /gene="trmE" /locus_tag="STM3843" /note="Switch I region; other site" /db_xref="CDD:206727" misc_feature 4048976..4048978 /gene="trmE" /locus_tag="STM3843" /note="G2 box; other site" /db_xref="CDD:206727" misc_feature order(4049030..4049062,4049066..4049110) /gene="trmE" /locus_tag="STM3843" /note="Switch II region; other site" /db_xref="CDD:206727" misc_feature 4049033..4049044 /gene="trmE" /locus_tag="STM3843" /note="G3 box; other site" /db_xref="CDD:206727" misc_feature 4049228..4049239 /gene="trmE" /locus_tag="STM3843" /note="G4 box; other site" /db_xref="CDD:206727" misc_feature 4049297..4049305 /gene="trmE" /locus_tag="STM3843" /note="G5 box; other site" /db_xref="CDD:206727" gene 4049846..4051066 /locus_tag="STM3844" /note="pseudogene; in-frame stop; putative integrase" /pseudo /db_xref="GeneID:1255371" gene 4051391..4052353 /locus_tag="STM3845" /db_xref="GeneID:1255372" CDS 4051391..4052353 /locus_tag="STM3845" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462744.1" /db_xref="GeneID:1255372" /translation="MFEETIKKQFELLDISNFNVDISHRLLFVCGGKVDVRAPIPPSF RDRLLTYTAKNASELHEHFILAETFKDYFKENAYPDLLVFEDDIASISSLIIIFLESP GSLVELGIFCNKSELFKKILIVASAEEVYGEDSFIYLGPLEYIKKKVSSSVVIYPWPD PEVLKYDNDFLDDLCVNIKEKLSSIPKTEQFSKDNSGHIALLITEIISLCAPIQLSEI ESALNSLGINISTKIINRSIYLLQKVGFIDVLSYSSNKYYFPLKERKWVKFGKTKDNK LIDNQQLKMKVRQSFVTLTDPLSKRRITALRQIIAKKEMAEEIN" misc_feature 4051436..4052260 /locus_tag="STM3845" /note="retron St85 family effector protein; Region: STM3845_fam; NF038232" /db_xref="CDD:468420" gene 4052416..4053288 /locus_tag="STM3846" /db_xref="GeneID:1255373" regulatory 4052416..4052421 /regulatory_class="ribosome_binding_site" /locus_tag="STM3846" /note="putative RBS for STM3846; RegulonDB:STMS1H003805" CDS 4052419..4053288 /locus_tag="STM3846" /note="RNA-dependent DNA polymerase" /codon_start=1 /transl_table=11 /product="putative reverse transcriptase" /protein_id="NP_462745.3" /db_xref="GeneID:1255373" /translation="MTAPYRYKIYKIAKRNSDKKRTIAHPSKELKFIQREITEYLTDK LPVHECAFAYKKGSSIKTNAQVHLHTKYLLKMDFENFFPSITPRLFFSKLRLANIDLT ADDKVLLENILFFKSKRNSNLRLSIGAPSSPLISNFVMYFWDIEVQEICSKIGVNYTR YADDLTFSTNNKDVLFDIPDMLENVLPKYSLGRIRINHEKTVFSSKGHNRHVTGITLT NDNKLSIGRERKRKISAMIHHFINGKLSTDECNKLVGLLAFAKNIEPSFYKSMVIKYG SDNIYKLQKQKDK" misc_feature 4052422..4053246 /locus_tag="STM3846" /note="retron St85 family RNA-directed DNA polymerase; Region: retron_St85_RT; NF038233" /db_xref="CDD:468421" gene 4054081..4055277 /gene="yidY" /locus_tag="STM3847" /db_xref="GeneID:1255374" regulatory 4054081..4054086 /regulatory_class="ribosome_binding_site" /gene="yidY" /locus_tag="STM3847" /note="putative RBS for yidY; RegulonDB:STMS1H003806" CDS 4054090..4055277 /gene="yidY" /locus_tag="STM3847" /note="1st mdule; similar to E. coli putative transport protein (AAC76733.1); Blastp hit to AAC76733.1 (391 aa), 77% identity in aa 1 - 391" /codon_start=1 /transl_table=11 /product="putative MFS family tranport protein" /protein_id="NP_462746.1" /db_xref="GeneID:1255374" /translation="MKRFLLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAF SVYLAGMATAMLFAGKIADQSGRKPVAIVGALVFMMASLLCSRASEGSLFLSGRFLQG VGAGGCYVVAFAILRDTLDEHRRAKVLSLLNGITCIVPVLAPVVGHLIMLRFPWQSLF YTMSAMGIIVGLLSLFILRETRPVRLAPRDLSRSSPAAESLINRFFVSRLAITTLSVS VILTFVNASPVLLMEVMGFSRGDYAITMALTAGVSMVVSFSTPFALGLFKPRTLMLVS QGLFLTAGVTLSLAHTNTVTLFGLTLICAGFSVGFGVAMSQALGPFSLRAGVASSTLG IAQVCGSSLWIWLAAILGISAMNMLIGILIGCSIVSILLIFSVTPNRSVAEHEEIPYQ SRP" misc_feature 4054090..4055268 /gene="yidY" /locus_tag="STM3847" /note="MdtL family multidrug efflux MFS transporter; Region: PRK10473" /db_xref="CDD:182486" gene 4055229..4056205 /gene="yidZ" /locus_tag="STM3848" /db_xref="GeneID:1255375" regulatory 4055229..4055234 /regulatory_class="ribosome_binding_site" /gene="yidZ" /locus_tag="STM3848" /note="putative RBS for yidZ; RegulonDB:STMS1H003807" CDS 4055246..4056205 /gene="yidZ" /locus_tag="STM3848" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC76734.1); Blastp hit to AAC76734.1 (319 aa), 85% identity in aa 1 - 314" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462747.1" /db_xref="GeneID:1255375" /translation="MKKSLTNLDLNLLLCLQLLMQERSVTKAAKRMNVTPSAVSKSLA KLRAWFDDPLFVNTPLGLAPTPLMVSMEQSLADWMQMGNQLLDKPHHQTPRGLKFELA AESPLMMIMFNSLSQQIYQRYPQATIKVRNWDYDSLEAITRGEVDIGFTGRESHPRSR ELLSLLPLAIDFEVLFSDLPWVWLREDHPALREAWDLDTFLRYPHISICWEQSDTWAL DDVLQEMGRKRHIALSLPGFEQSLFMAAQPGHTLIATAPRYCQHYNQLHQLPLVARPL PFDAQQREKLMVPFTLLWHKRNSHNPKIVWLRQAINTLCRRLI" misc_feature 4055246..4056202 /gene="yidZ" /locus_tag="STM3848" /note="HTH-type transcriptional regulator YidZ; Region: PRK10216" /db_xref="CDD:182312" gene 4056351..4057118 /gene="yieE" /locus_tag="STM3849" /db_xref="GeneID:1255376" regulatory 4056351..4056356 /regulatory_class="ribosome_binding_site" /gene="yieE" /locus_tag="STM3849" /note="putative RBS for yieE; RegulonDB:STMS1H003808" CDS 4056363..4057118 /gene="yieE" /locus_tag="STM3849" /note="similar to E. coli orf, hypothetical protein (AAC76735.1); Blastp hit to AAC76735.1 (253 aa), 77% identity in aa 5 - 253" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462748.1" /db_xref="GeneID:1255376" /translation="MATHFARGILTEGQLVSIRLSSSCHIEARNLPAHRRTRFLASRG LLAELMFMLYGISELPEIIIQAKGKPAFRDKNLPGFSISYAGNMVGVALTTEGECGLD MELQRTSRGFHHPHSLERHPFSRNENLWVANQNDPNEARAQLITLRQSVLKLTGDVMN DDPRELQLLPVAGRLKCAHVTQLEAVCDAEDVLVWSVTVTPAIEKLKVWEFDGKLGWK SLPDIQTRANEPTGRLMRFAQLPAAKSYTLNRS" misc_feature 4056363..4056854 /gene="yieE" /locus_tag="STM3849" /note="Phosphopantetheinyl transferase [Coenzyme transport and metabolism]; Region: Sfp; COG2091" /db_xref="CDD:441694" gene 4057118..4057702 /gene="yieF" /locus_tag="STM3850" /db_xref="GeneID:1255377" CDS 4057118..4057702 /gene="yieF" /locus_tag="STM3850" /note="similar to E. coli orf, hypothetical protein (AAC76736.1); Blastp hit to AAC76736.1 (188 aa), 92% identity in aa 1 - 187" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_462749.3" /db_xref="GeneID:1255377" /translation="MKKGARMSETLNVVTLLGSLRKGSFNGMVARTLPKVAPAGMTVS PLPSIGDIPLYDADIQQEEGFPASVEALAEQIRNADGVVIVTPEYNYSVPGGLKNAID WLSRLPEQPLAGKPVLIQTSSMGAIGGARCQYHLRQILVFLDAMVMNKPEFMGGVIQN KVDPQTGEVVDQGTLDHLTGQLTAFGEFIQRVKA" misc_feature 4057148..4057645 /gene="yieF" /locus_tag="STM3850" /note="NAD(P)H-dependent FMN reductase [Energy production and conversion]; Region: SsuE; COG0431" /db_xref="CDD:440200" gene complement(4057747..4059210) /gene="yieG" /locus_tag="STM3851" /db_xref="GeneID:1255378" CDS complement(4057747..4059210) /gene="yieG" /locus_tag="STM3851" /note="similar to E. coli putative membrane / transport protein (AAC76737.1); Blastp hit to AAC76737.1 (445 aa), 96% identity in aa 1 - 445" /codon_start=1 /transl_table=11 /product="putative xanthine/uracil permeases family" /protein_id="NP_462750.3" /db_xref="GeneID:1255378" /translation="MRGRNRCRTNKLSEKNYHTTAPGVAFWYRITANFPSFLRKLIMS QQHTTQASGQGMLERVFKLREHGTTARTEVIAGFTTFLTMVYIVFVNPQILGVAGMDT SAVFVTTCLIAAFGSILMGLFANLPVALAPAMGLNAFFAFVVVQAMGLPWQVGMGAIF WGAVGLLLLTIFRVRYWMIANIPVSLRVGITSGIGLFIGMMGLKNAGVIVANPETLVS IGNLTSHSVLLGVLGFFIIAILASRNIHAAVLVSIIVTTLLGWMMGDVHYNGIVSAPP SVTSVVGHVDLAGSFNLGLAGVIFSFMLVNLFDSSGTLIGVTDKAGLADEKGKFPRMK QALFVDSISSVTGAFVGTSSVTAYIESSSGVSVGGRTGLTAVVVGILFLLVIFLSPLA GMVPPYAAAGALIYVGVLMTSSLARVNWQDLTESVPAFITAVMMPFSFSITEGIALGF ISYCVMKIGTGRLRDLSPCVVIVALLFVLKIVFIDAH" misc_feature complement(4057759..4059051) /gene="yieG" /locus_tag="STM3851" /note="Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 (NCS2) family [Nucleotide transport and metabolism]; Region: NCS2; COG2252" /db_xref="CDD:441853" gene 4059242..4059918 /gene="yieH" /locus_tag="STM3852" /db_xref="GeneID:1255379" regulatory 4059242..4059247 /regulatory_class="ribosome_binding_site" /gene="yieH" /locus_tag="STM3852" /note="putative RBS for yieH; RegulonDB:STMS1H003809" CDS 4059253..4059918 /gene="yieH" /locus_tag="STM3852" /note="similar to E. coli putative phosphatase (AAC76738.1); Blastp hit to AAC76738.1 (221 aa), 81% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="putative phosphatase/phosphohexomutase" /protein_id="NP_462751.1" /db_xref="GeneID:1255379" /translation="MSQIEAVFFDCDGTLVDSEVICSRAYVTMFRQFGITLELTEVFR RFKGVKLYEIIDTISKEHGVALAKAELEPVYRAEVARLFDTELEAIAGANTLLESIKT PMCVVSNGPVSKMQHSLGKLGMLHHFPDLLFSGYDIQRWKPDPALMLHAANAMKVNVE KCILVDDSSAGAQSGIAAGMEVFYFCADPHNKPIDHPNVTTFTDLAQLPGLWKARGWE ITR" misc_feature 4059253..4059915 /gene="yieH" /locus_tag="STM3852" /note="6-phosphogluconate phosphatase; Provisional; Region: PRK10563" /db_xref="CDD:182552" misc_feature order(4059280..4059294,4059574..4059579,4059676..4059678, 4059748..4059753,4059760..4059765) /gene="yieH" /locus_tag="STM3852" /note="active site" /db_xref="CDD:319828" gene complement(4060013..4060750) /gene="phoU" /locus_tag="STM3853" /db_xref="GeneID:1255380" CDS complement(4060013..4060738) /gene="phoU" /locus_tag="STM3853" /note="similar to E. coli negative regulator for pho regulon and putative enzyme in phosphate metabolism (AAC76747.1); Blastp hit to AAC76747.1 (241 aa), 95% identity in aa 1 - 238" /codon_start=1 /transl_table=11 /product="regulatory gene for high affinity phosphate uptake" /protein_id="NP_462752.1" /db_xref="GeneID:1255380" /translation="MDSLNLNKHISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMH NQDSELAKRVVEGDHQVNMMEVAIDEACVRIIAKRQPTASDLRLVMAIIKTIAELERI GDVADKICRTALEKFSQQHQPLLVSLESLGRHTVQMLHDVLDAFARMDLDEAVRIYRE DKKVDQEYEGIVRQLMTYMMEDSRTIPSVLTALFCARSIERIGDRCQNICEYIFYFVK GQDFRHVGGDELDKLLAGKDPKE" misc_feature complement(4060031..4060738) /gene="phoU" /locus_tag="STM3853" /note="phosphate signaling complex protein PhoU; Region: PRK11115" /db_xref="CDD:182974" regulatory complement(4060745..4060750) /regulatory_class="ribosome_binding_site" /gene="phoU" /locus_tag="STM3853" /note="putative RBS for phoU; RegulonDB:STMS1H003810" gene complement(4060753..4061541) /gene="pstB" /locus_tag="STM3854" /db_xref="GeneID:1255381" CDS complement(4060753..4061526) /gene="pstB" /locus_tag="STM3854" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of high-affinity phosphate-specific transport system (AAC76748.1); Blastp hit to AAC76748.1 (257 aa), 98% identity in aa 1 - 257" /codon_start=1 /transl_table=11 /product="high-affinity phosphate transporter" /protein_id="NP_462753.1" /db_xref="GeneID:1255381" /translation="MSMVETAPSKIQVRDLNFYYGKFHALKNINLDIAKNQVTAFIGP SGCGKSTLLRTFNKMYSLYPEQRAEGEILLDGDNILTNTQDIALLRAKVGMVFQKPTP FPMSIYDNIAFGVRLFEKLSRADMDERVQWALTKAALWNETKDKLHQSGYSLSGGQQQ RLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARC SDHTAFMYLGELIEFSNTDDLFTKPAKKQTEDYITGRYG" misc_feature complement(4060756..4061526) /gene="pstB" /locus_tag="STM3854" /note="ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]; Region: PstB; COG1117" /db_xref="CDD:440734" regulatory complement(4061536..4061541) /regulatory_class="ribosome_binding_site" /gene="pstB" /locus_tag="STM3854" /note="putative RBS for pstB; RegulonDB:STMS1H003811" gene complement(4061613..4062517) /gene="pstA" /locus_tag="STM3855" /db_xref="GeneID:1255382" CDS complement(4061613..4062503) /gene="pstA" /locus_tag="STM3855" /note="ABC superfamily (membrane); similar to E. coli high-affinity phosphate-specific transport system (AAC76749.1); Blastp hit to AAC76749.1 (296 aa), 95% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="high-affinity phosphate transporter" /protein_id="NP_462754.1" /db_xref="GeneID:1255382" /translation="MATLDMQNTAQLAESRRKMQARRRMKNRIALTLSMATMAFGLFW LIWILMSTITRGIDGMSLALFTEMTPPPNTAGGGLANALAGSGLLILWATVLGTPLGI MAGIYLAEYGRKSWLAEIIRFINDILLSAPSIVVGLFVYTIVVAQMQHFSGWAGVIAL ALLQVPIVIRTTENMLKLVPDSLREAAYALGTPKWKMISAITLKASISGIMTGILLAI ARIAGETAPLLFTALSNQFWSTDMMQPIANLPVTIFKFAMSPFAEWQQLAWAGVLIIT LCVLLLNILARVVFAKKKHG" misc_feature complement(4061619..4062503) /gene="pstA" /locus_tag="STM3855" /note="phosphate ABC transporter permease PstA; Region: pstA; PRK11268" /db_xref="CDD:183065" gene complement(4062503..4063478) /gene="pstC" /locus_tag="STM3856" /db_xref="GeneID:1255383" CDS complement(4062503..4063462) /gene="pstC" /locus_tag="STM3856" /note="ABC superfamily (membrane); similar to E. coli high-affinity phosphate-specific transport system, cytoplasmic membrane component (AAC76750.1); Blastp hit to AAC76750.1 (319 aa), 97% identity in aa 1 - 319" /codon_start=1 /transl_table=11 /product="high-affinity phosphate transporter" /protein_id="NP_462755.1" /db_xref="GeneID:1255383" /translation="MAATKPAFNPPGKKGDMIFSALVKLAALIVLLMLGGIIVSLIIS SWPSIQKFGFSFLWTKEWDAPNDIYGALVPIYGTLVTSFIALLIAVPVSFGIALFLTE LAPGWLKRPLGIAIELLAAIPSIVYGMWGLFIFAPLFATYFQEPVGNILSNIPFVGAL FSGPAFGIGILAAGVILAIMIIPYIAAVMRDVFEQTPVMMKESAYGIGCTTWEVIWRI VLPFTKNGVIGGIMLGLGRALGETMAVTFIIGNTYQLDSASLYMPGNSITSALANEFA EAESGLHVAALMELGLILFVITFIVLAASKFMIMRLAKNEGAR" misc_feature complement(4062506..4063462) /gene="pstC" /locus_tag="STM3856" /note="phosphate ABC transporter permease PstC; Region: pstC; PRK11275" /db_xref="CDD:183070" misc_feature complement(order(4062647..4062652,4062680..4062685, 4062722..4062727,4062734..4062745,4062764..4062766, 4062773..4062778,4062818..4062820,4062869..4062871, 4062878..4062883,4062893..4062895,4062899..4062904, 4062911..4062913,4062917..4062919,4062923..4062928, 4063067..4063069,4063073..4063078,4063085..4063114, 4063118..4063129,4063160..4063162,4063175..4063180, 4063187..4063192)) /gene="pstC" /locus_tag="STM3856" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(4062728..4062745,4063067..4063111)) /gene="pstC" /locus_tag="STM3856" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(4062650..4062652,4062680..4062682, 4062689..4062691,4062725..4062727,4062941..4062943, 4063067..4063069)) /gene="pstC" /locus_tag="STM3856" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(4062797..4062799,4062809..4062814, 4062830..4062868)) /gene="pstC" /locus_tag="STM3856" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(4062512..4062517) /regulatory_class="ribosome_binding_site" /gene="pstA" /locus_tag="STM3855" /note="putative RBS for pstA; RegulonDB:STMS1H003812" regulatory complement(4063473..4063478) /regulatory_class="ribosome_binding_site" /gene="pstC" /locus_tag="STM3856" /note="putative RBS for pstC; RegulonDB:STMS1H003813" gene complement(4063598..4064760) /gene="pstS" /locus_tag="STM3857" /db_xref="GeneID:1255384" CDS complement(4063598..4064638) /gene="pstS" /locus_tag="STM3857" /note="ABC superfamily (bind_prot); similar to E. coli high-affinity phosphate-specific transport system; periplasmic phosphate-binding protein (AAC76751.1); Blastp hit to AAC76751.1 (346 aa), 92% identity in aa 1 - 346" /codon_start=1 /transl_table=11 /product="high-affinity phosphate transporter" /protein_id="NP_462756.1" /db_xref="GeneID:1255384" /translation="MKVMRTTVATVVAATLSMSAFSAFAAASLTGAGATFPAPVYAKW ADTYQKETGNKVNYQGIGSSGGVKQITANTVDFGASDAPLSDEKLNQEGLFQFPTVIG GVVLAVNIPGLKSGELVLDGKTLGDIYLGKIKKWDDEAITKLNPGVKLPSQNIAVVRR ADGSGTSFVFTSYLAKVNDEWKSKVGAGSTVNWPTGLGGKGNDGIAAFVQRLPGAIGY VEYAYAKQNNLAYTKLVSADGKPVSPTEESFSNAAKGADWSKTFAQDLTNQKGDDVWP ITSTTFILVHKAQKKPEQGAEVLKFFDWAYKNGAKQANDLDYASLPDNVVEQVRAAWK TSIKDSNGKALY" misc_feature complement(4063601..4064638) /gene="pstS" /locus_tag="STM3857" /note="phosphate ABC transporter substrate-binding protein PstS; Region: PRK10918" /db_xref="CDD:182837" misc_feature complement(order(4064141..4064149,4064159..4064161, 4064396..4064398,4064450..4064455,4064531..4064539)) /gene="pstS" /locus_tag="STM3857" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270283" regulatory complement(4064644..4064649) /regulatory_class="ribosome_binding_site" /gene="pstS" /locus_tag="STM3857" /note="putative RBS for pstS; RegulonDB:STMS1H003814" protein_bind complement(4064695..4064713) /gene="pstS" /locus_tag="STM3857" /note="putative binding site for PhoB, RegulonDB: STMS1H000338" /bound_moiety="PhoB" protein_bind complement(4064727..4064745) /gene="pstS" /locus_tag="STM3857" /note="putative binding site for PhoB, RegulonDB: STMS1H000343" /bound_moiety="PhoB" regulatory complement(4064733..4064741) /regulatory_class="minus_10_signal" /gene="pstS" /locus_tag="STM3857" /note="putative -10_signal for pstS; RegulonDB:STMLTH004619" regulatory complement(4064752..4064760) /regulatory_class="minus_35_signal" /gene="pstS" /locus_tag="STM3857" /note="putative -35_signal for pstS; RegulonDB:STMLTH004619" gene complement(4064805..4066184) /locus_tag="STM3858" /db_xref="GeneID:1255385" CDS complement(4064805..4066178) /locus_tag="STM3858" /note="similar to E. coli PTS system, fructose-specific transport protein (AAC75228.1); Blastp hit to AAC75228.1 (563 aa), 66% identity in aa 104 - 552" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system fructose-specific component IIB" /protein_id="NP_462757.1" /db_xref="GeneID:1255385" /translation="MTKKIVAVTACPTGVAHTFMAAEALEIEARKRGDWIKVETRGSV GAKNTLTAEEIAQADVVIIAADIELDLSGFVGKRLYRTSTGAALKKSAQEMDNAFNSA EVYQGSAGRSSSAGKTELPGVYKHLMTGVSHMLPLVVAGGLCIALSFVFGIQAFNEPG TLAAALFQIGGKAAFALMVPVLAGFIAFSIADRPGLAPGLIGGMLASLCGAGFLGGIV AGFLAGYSVRFLAQNIKLPASMEALKPVLVLPLLSTLITGLIMIYVVGGPVSAVMEGL TTFLGNMTSTNAILLGMLLGAMQGFDLGGPVNKAAYTFGVGLLASHSYMPMAAIMAAG MVPALGMGVATWAARAKFNAAEHEAGNASFILGLCFISEGAIPFAARDPMRVIPSTMV GGAIAGGLSMYFGCTLMAPHGGLFVLAIPHAVEHVMQYLLSIALGTIVCGLMYALLKP SAVAQTV" misc_feature complement(4064832..4066175) /locus_tag="STM3858" /note="PTS system fructose-specific transporter subunits IIBC; Provisional; Region: PRK10712" /db_xref="CDD:236740" regulatory complement(4066179..4066184) /regulatory_class="ribosome_binding_site" /locus_tag="STM3858" /note="putative RBS for STM3858; RegulonDB:STMS1H003815" gene complement(4066227..4067052) /locus_tag="STM3859" /db_xref="GeneID:1255386" CDS complement(4066227..4067045) /locus_tag="STM3859" /EC_number="1.1.1.25" /note="similar to E. coli dehydroshikimate reductase (AAC76306.1); Blastp hit to AAC76306.1 (272 aa), 26% identity in aa 20 - 258; quinate 5-dehydrogenase" /codon_start=1 /transl_table=11 /product="putative shikimate" /protein_id="NP_462758.1" /db_xref="GeneID:1255386" /translation="MTKRINKDTQVCMSLAARPSNFGTRFHNYLYEALDLNYLYKAFS PTDLTQAISGVRGLGIRGCAISMPFKEACIPLVDELDASAQAIHSVNTIVNTNGHLKA YNTDYIAIARLLANYKVSPDLVFALRGSGGMAKAVACALKDAGFTRGYIVAIDEASGK QLAELYGYEWRPDTDGIEADLLINATPIGMAGGNDADKLSYSEQEVDKASVIFDVVAL PPVTPLIRYARERGKTVITGSEVFAIQAVEQFVLYTGIRPDDALFQKAAAWSRL" misc_feature complement(4066233..4067045) /locus_tag="STM3859" /note="shikimate 5-dehydrogenase; Reviewed; Region: PRK12550" /db_xref="CDD:183587" regulatory complement(4067047..4067052) /regulatory_class="ribosome_binding_site" /locus_tag="STM3859" /note="putative RBS for STM3859; RegulonDB:STMS1H003816" gene 4067140..4068897 /locus_tag="STM3860" /db_xref="GeneID:1255387" CDS 4067140..4068897 /locus_tag="STM3860" /note="periplasmic component; similar to E. coli putative transport protein (AAC73180.1); Blastp hit to AAC73180.1 (551 aa), 49% identity in aa 1 - 309, 29% identity in aa 297 - 548" /codon_start=1 /transl_table=11 /product="putative dipeptide/oligopeptide/nickel ABC-type transport systems" /protein_id="NP_462759.1" /db_xref="GeneID:1255387" /translation="MTTRHTEQKYLKLLQHYGDKPVSVTLQELADVLFCTRRHMRNLL LQMQEAKWLIWQSQAGRGHRARLHLRYKPEQLLSEKAEQLLESGHIDQAIQLLGKNKH QVAQLLRSKLGYSVRADYQRLCIPYYRTMPSLCPGIPLRRSEQHLVRQIFSGLTRINE EKGEVEADLAHHWRQIDPLRWRFYLRPAVLWHDGQELTIDAVIASLTRSAKLPLFSHL QTIQATGPLSLEITLAHPDNRLPLLLSHIDAMILPPDHTQRADFPAHPVGTGPYEVVE NNGFHLQMKAFDHYFGLRGLLDEVEVFIWPNLTETDNLAESLSDNDTAAWLSSSLSDE DYVSGRLSQVSGKPSDNLREMFLERGGYFLLCDSRSPHWHTAEHRRWLRETLSPYAIL QHLSEAIRPFWVPGGSLLSSWFHTIEAGPACSPFISSSPYAKLRLAYHDQHPEFPMLL DIMQEIMRQQGILLEGVELNYDDWANGKANVDLWLGTVNFPIPEEWNVGTWLLGSPLL RHAISGGDDALLAQWETQWHAETISAEQLVRETTRSGWLQPLFHHWMRLKSPDRARGI HLNNLGWFDFRSTWIEPGP" misc_feature 4067140..4068888 /locus_tag="STM3860" /note="DNA-binding transcriptional regulator SgrR of sgrS sRNA, contains a MarR-type HTH domain and a periplasmic-type solute-binding domain [Transcription]; Region: SgrR; COG4533" /db_xref="CDD:443600" gene complement(4069048..4070891) /gene="glmS" /locus_tag="STM3861" /db_xref="GeneID:1255388" CDS complement(4069048..4070877) /gene="glmS" /locus_tag="STM3861" /EC_number="2.6.1.16" /note="similar to E. coli L-glutamine:D-fructose-6-phosphate aminotransferase (AAC76752.1); Blastp hit to AAC76752.1 (609 aa), 99% identity in aa 1 - 609" /codon_start=1 /transl_table=11 /product="L-glutamine:D-fructose-6-phosphate aminotransferase" /protein_id="NP_462760.1" /db_xref="GeneID:1255388" /translation="MCGIVGAIAQRDVAEILLEGLRRLEYRGYDSAGLAVVDAEGHMT RLRRLGKVQMLAQAAEEHPLHGGTGIAHTRWATHGEPSEANAHPHVSEHIVVVHNGII ENHEPLREALKARGYTFVSETDTEVIAHLVNWELKQGGTLREAVLRAIPQLRGAYGTV IMDTRHPDTLLAARSGSPLVIGLGMGENFIASDQLALLPVTRRFIFLEEGDIAEITRR SVNIFDNTGAEVKRQDIESNLQYDAGDKGIYRHYMQKEIYEQPNAIKNTLTGRISHGQ VDLSELGPNADELLSKVEHIQILACGTSYNSGMVSRYWFESLAGIPCDVEIASEFRYR KSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSSLVRESDLALMT NAGTEIGVASTKAFTTQLTVLLMLVAKLSRLKGLDASIEHDIVHGLQALPSRIEQMLS QDKRIELLAEDFSDKHHALFLGRGDQYPIALEGALKLKEISYIHAEAYAAGELKHGPL ALIDADMPVIVVAPNNELLEKLKSNIEEVRARGGQLYVFADQDAGFVSNDNMHIIEMP HVEEVIAPIFYTVPLQLLAYHVALIKGTDVDQPRNLAKSVTVE" misc_feature complement(4069051..4070877) /gene="glmS" /locus_tag="STM3861" /note="Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis]; Region: GlmS; COG0449" /db_xref="CDD:440218" regulatory complement(4070886..4070891) /regulatory_class="ribosome_binding_site" /gene="glmS" /locus_tag="STM3861" /note="putative RBS for glmS; RegulonDB:STMS1H003817" gene complement(4071066..4072513) /gene="glmU" /locus_tag="STM3862" /db_xref="GeneID:1255389" CDS complement(4071066..4072436) /gene="glmU" /locus_tag="STM3862" /EC_number="2.7.7.23" /note="similar to E. coli N-acetyl glucosamine-1-phosphate uridyltransferase (AAC76753.1); Blastp hit to AAC76753.1 (456 aa), 91% identity in aa 1 - 456; glucosamine-1-phosphate acetyl transferase" /codon_start=1 /transl_table=11 /product="N-acetyl glucosamine-1-phosphate uridyltransferase" /protein_id="NP_462761.1" /db_xref="GeneID:1255389" /translation="MLNSAMSVVILAAGKGTRMYSDIPKVLHTLAGKPMVQHVIDAAT KLGAAQVHLVYGHGGELLKQTLKDDKLNWVLQAEQLGTGHAMQQAAPFFSDDEDILML YGDVPLISVETLQRLRDAKPQGGIGLLTVKLDDPSGYGRITRENGKVTGIVEHKDATD EQRQIQEINTGILIANGADMKRWLSKLTNNNAQGEYYITDIIALAYQEGREIAAVHPA RISETDGVNNRLQLSRLERIYQAEQAEKLLLSGVMLRDPARFDLRGTLHCGMDVEIDA NVIIEGYVTLGHRVKIGAGCIIKNSVIGDDCEISPYSVVEDAHLEAACTIGPFARLRP GAELLAGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANK FKTVIGDDVFVGSDTQLVAPVTVGKGATIAAGTTVTRNVADNELVLSRVPQVHKQGWQ RPVKKK" misc_feature complement(4071069..4072436) /gene="glmU" /locus_tag="STM3862" /note="bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU; Region: glmU; PRK09451" /db_xref="CDD:181867" regulatory complement(4072441..4072446) /regulatory_class="ribosome_binding_site" /gene="glmU" /locus_tag="STM3862" /note="putative RBS for glmU; RegulonDB:STMS1H003818" regulatory complement(4072486..4072494) /regulatory_class="minus_10_signal" /gene="glmU" /locus_tag="STM3862" /note="putative -10_signal for glmU; RegulonDB:STMLTH004620" protein_bind complement(4072495..4072523) /note="putative binding site for NagC, RegulonDB: STMS1H000305" /bound_moiety="NagC" regulatory complement(4072505..4072513) /regulatory_class="minus_35_signal" /gene="glmU" /locus_tag="STM3862" /note="putative -35_signal for glmU; RegulonDB:STMLTH004620" protein_bind complement(4072609..4072635) /note="putative binding site for NagC, RegulonDB: STMS1H000302" /bound_moiety="NagC" gene complement(4072756..4073460) /locus_tag="STM3863" /db_xref="GeneID:1255390" CDS complement(4072756..4073454) /locus_tag="STM3863" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_462762.1" /db_xref="GeneID:1255390" /translation="MSFQPSFAGPQPDSRIDRTTFIRRAYLHLAVAIVGFIVLSAAWS FIGVGEYALDVLLAGGRYSWLVVLGAFMLVGMLATRLADNAGNNQTQLIGLGIYVLAE SLIFAPLLTVAAYINPSSIGAAAITTLLLVGGLTFTAFSIKKDFSFLRSFLTMAGFIA FGAIIASVICGFSLGVWFSALMVLLCAGFILYDTSNIIHHYPTDRPAGAALHLFASIA TMFWYILRIFMSRN" misc_feature complement(4072759..4073415) /locus_tag="STM3863" /note="Integral membrane protein YbhL, putative Ca2+ regulator, Bax inhibitor (BI-1)/TMBIM family [Inorganic ion transport and metabolism]; Region: YbhL; COG0670" /db_xref="CDD:440434" regulatory complement(4073455..4073460) /regulatory_class="ribosome_binding_site" /locus_tag="STM3863" /note="putative RBS for STM3863; RegulonDB:STMS1H003819" gene complement(4073684..4074112) /gene="atpC" /locus_tag="STM3864" /db_xref="GeneID:1255391" CDS complement(4073684..4074103) /gene="atpC" /locus_tag="STM3864" /note="similar to E. coli membrane-bound ATP synthase, F1 sector, epsilon-subunit (AAC76754.1); Blastp hit to AAC76754.1 (139 aa), 97% identity in aa 1 - 139" /codon_start=1 /transl_table=11 /product="membrane-bound ATP synthase, F1 sector, epsilon-subunit" /protein_id="NP_462763.1" /db_xref="GeneID:1255391" /translation="MAMTYHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLT AIKPGMIRIVKQHGHEEFIYLSGGILEVQPGSVTVLADTAIRGQDLDEARALEAKRKA EEHIKSSHGDVDYAQASAELAKAIAKLRVIELTKKAM" misc_feature complement(4073696..4074100) /gene="atpC" /locus_tag="STM3864" /note="F0F1 ATP synthase subunit epsilon; Validated; Region: atpC; PRK00571" /db_xref="CDD:234796" regulatory complement(4074107..4074112) /regulatory_class="ribosome_binding_site" /gene="atpC" /locus_tag="STM3864" /note="putative RBS for atpC; RegulonDB:STMS1H003820" gene complement(4074124..4075517) /gene="atpD" /locus_tag="STM3865" /db_xref="GeneID:1255392" CDS complement(4074124..4075506) /gene="atpD" /locus_tag="STM3865" /note="similar to E. coli membrane-bound ATP synthase, F1 sector, beta-subunit (AAC76755.1); Blastp hit to AAC76755.1 (460 aa), 99% identity in aa 1 - 460" /codon_start=1 /transl_table=11 /product="membrane-bound ATP synthase, F1 sector, beta-subunit" /protein_id="NP_462764.1" /db_xref="GeneID:1255392" /translation="MATGKIVQVIGAVVDVEFPQDAVPRVYDALEVQNGNEKLVLEVQ QQLGGGIVRTIAMGSSDGLRRGLDVKDLEHPIEVPVGKATLGRIMNVLGEPVDMKGEI GEEERWAIHRAAPSYEELSNSQELLETGIKVIDLMCPFAKGGKVGLFGGAGVGKTVNM MELIRNIAIEHSGYSVFAGVGERTREGNDFYHEMTDSNVIDKVSLVYGQMNEPPGNRL RVALTGLTMAEKFRDEGRDVLLFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEM GVLQERITSTKTGSITSVQAVYVPADDLTDPSPATTFAHLDATVVLSRQIASLGIYPA VDPLDSTSRQLDPLVVGQEHYDTARGVQSILQRYQELKDIIAILGMDELSEEDKLVVA RARKIQRFLSQPFFVAEVFTGSPGKYVSLKDTIRGFKGIMEGEYDHLPEQAFYMVGSI DEAVEKAKKL" misc_feature complement(4074127..4075506) /gene="atpD" /locus_tag="STM3865" /note="FoF1-type ATP synthase, beta subunit [Energy production and conversion]; Region: AtpD; COG0055" /db_xref="CDD:439825" regulatory complement(4075512..4075517) /regulatory_class="ribosome_binding_site" /gene="atpD" /locus_tag="STM3865" /note="putative RBS for atpD; RegulonDB:STMS1H003821" gene complement(4075533..4076408) /gene="atpG" /locus_tag="STM3866" /db_xref="GeneID:1255393" CDS complement(4075533..4076396) /gene="atpG" /locus_tag="STM3866" /note="similar to E. coli membrane-bound ATP synthase, F1 sector, gamma-subunit (AAC76756.1); Blastp hit to AAC76756.1 (287 aa), 96% identity in aa 1 - 287" /codon_start=1 /transl_table=11 /product="membrane-bound ATP synthase, F1 sector, gamma-subunit" /protein_id="NP_462765.1" /db_xref="GeneID:1255393" /translation="MAGAKEIRSKIASVQNTQKITKAMEMVAASKMRKSQDRMAASRP YAETMRKVIGHLANGNLEYKHPYLEERDVKRVGYLVVSTDRGLCGGLNINLFKKLLAD MKAWSDKGVQCELAMIGSKGVSFFNSVGGNVVAQVTGMGDNPSLSELIGPVKVMLQAY DEGRLDKLYIVSNKFINTMSQVPTITQLLPLPASEDDDLKRKAWDYLYEPDPKALLDT LLRRYVESQVYQGVVENLASEQAARMVAMKAATDNGGSLIKELQLVYNKARQASITQE LTEIVSGAAAV" misc_feature complement(4075536..4076396) /gene="atpG" /locus_tag="STM3866" /note="F0F1 ATP synthase subunit gamma; Validated; Region: PRK05621" /db_xref="CDD:235535" misc_feature complement(order(4075545..4075562,4075566..4075568, 4075575..4075580,4075587..4075592,4075596..4075601, 4075608..4075610,4075626..4075628,4075635..4075640, 4075647..4075649,4076013..4076015,4076022..4076027, 4076034..4076039,4076127..4076138,4076142..4076144, 4076304..4076309,4076316..4076321,4076325..4076330, 4076337..4076339,4076349..4076351,4076367..4076369, 4076382..4076384)) /gene="atpG" /locus_tag="STM3866" /note="core domain interface [polypeptide binding]; other site" /db_xref="CDD:213394" misc_feature complement(order(4075731..4075733,4075740..4075745, 4075752..4075754,4076241..4076246,4076253..4076255, 4076262..4076267,4076271..4076276)) /gene="atpG" /locus_tag="STM3866" /note="delta subunit interface [polypeptide binding]; other site" /db_xref="CDD:213394" misc_feature complement(order(4075731..4075736,4075743..4075745, 4075980..4075997,4076028..4076030)) /gene="atpG" /locus_tag="STM3866" /note="epsilon subunit interface [polypeptide binding]; other site" /db_xref="CDD:213394" regulatory complement(4076403..4076408) /regulatory_class="ribosome_binding_site" /gene="atpG" /locus_tag="STM3866" /note="putative RBS for atpG; RegulonDB:STMS1H003822" gene complement(4076447..4077995) /gene="atpA" /locus_tag="STM3867" /db_xref="GeneID:1255394" CDS complement(4076447..4077988) /gene="atpA" /locus_tag="STM3867" /note="similar to E. coli membrane-bound ATP synthase, F1 sector, alpha-subunit (AAC76757.1); Blastp hit to AAC76757.1 (513 aa), 98% identity in aa 1 - 513" /codon_start=1 /transl_table=11 /product="membrane-bound ATP synthase, F1 sector, alpha-subunit" /protein_id="NP_462766.1" /db_xref="GeneID:1255394" /translation="MQLNSTEISELIKQRIAQFNVVSEAHNEGTIVSVSDGVIRIHGL ADCMQGEMISLPGNRYAIALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRG LLGRVVNTLGAPIDGKGPVDNDGFSAVEAIAPGVIDRQSVDQPVQTGYKAVDSMIPIG RGQRELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIGQKASTISNVVRKLEEHGAL ANTIVVVATASESAALQYLAPYAGCAMGEYFRDRGEDALIIYDDLSKQAVAYRQISLL LRRPPGREAFPGDVFYLHSRLLERAARVNADYVEAFTKGEVKGKTGSLTALPIIETQA GDVSAFVPTNVISITDGQIFLESNLFNAGIRPAVNPGISVSRVGGAAQTKIMKKLSGG IRTALAQYRELAAFSQFASDLDDATRKQLDHGQKVTELLKQKQYAPMSVAQQSLVLFA AERGYLADVELAKIGSFEAALLAYVDRDHAPLMQEINQSGGYNDEIEGKLKGILDSFK ATQSW" misc_feature complement(4076459..4077988) /gene="atpA" /locus_tag="STM3867" /note="F0F1 ATP synthase subunit alpha; Validated; Region: PRK09281" /db_xref="CDD:236448" regulatory complement(4077990..4077995) /regulatory_class="ribosome_binding_site" /gene="atpA" /locus_tag="STM3867" /note="putative RBS for atpA; RegulonDB:STMS1H003823" gene complement(4078001..4078550) /gene="atpH" /locus_tag="STM3868" /db_xref="GeneID:1255395" CDS complement(4078001..4078534) /gene="atpH" /locus_tag="STM3868" /note="similar to E. coli membrane-bound ATP synthase, F1 sector, delta-subunit (AAC76758.1); Blastp hit to AAC76758.1 (177 aa), 94% identity in aa 1 - 177" /codon_start=1 /transl_table=11 /product="membrane-bound ATP synthase, F1 sector, delta-subunit" /protein_id="NP_462767.1" /db_xref="GeneID:1255395" /translation="MSEFVTVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQM AELLSGALAPETLAESFIAVCGEQLDENGQNLIRVMAENNRLNALPDVLEQFIHLRAA SEATSEVEVTSATALSEEQLSKISAAMEKRLSRKVKLNCKIDKSVMAGVIIRAGDMVI DGSVRGRLERLADVLQS" misc_feature complement(4078004..4078534) /gene="atpH" /locus_tag="STM3868" /note="F0F1 ATP synthase subunit delta; Validated; Region: PRK05758" /db_xref="CDD:235593" regulatory complement(4078545..4078550) /regulatory_class="ribosome_binding_site" /gene="atpH" /locus_tag="STM3868" /note="putative RBS for atpH; RegulonDB:STMS1H003824" gene complement(4078549..4079032) /gene="atpF" /locus_tag="STM3869" /db_xref="GeneID:1255396" CDS complement(4078549..4079019) /gene="atpF" /locus_tag="STM3869" /note="similar to E. coli membrane-bound ATP synthase, F0 sector, subunit b (AAC76759.1); Blastp hit to AAC76759.1 (156 aa), 96% identity in aa 1 - 156" /codon_start=1 /transl_table=11 /product="membrane-bound ATP synthase, F0 sector, subunit b" /protein_id="NP_462768.1" /db_xref="GeneID:1255396" /translation="MNLNATILGQAIAFILFVWFCMKYVWPPLMAAIEKRQKEIADGL ASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQANKRRAQILDEAKTEAEQERTKIV AQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERSVDEAANSDIVDKLVAEL" misc_feature complement(4078552..4079019) /gene="atpF" /locus_tag="STM3869" /note="F0F1 ATP synthase subunit B; Validated; Region: PRK05759" /db_xref="CDD:180240" regulatory complement(4079027..4079032) /regulatory_class="ribosome_binding_site" /gene="atpF" /locus_tag="STM3869" /note="putative RBS for atpF; RegulonDB:STMS1H003825" gene complement(4079079..4079330) /gene="atpE" /locus_tag="STM3870" /db_xref="GeneID:1255397" CDS complement(4079079..4079318) /gene="atpE" /locus_tag="STM3870" /note="ATP synthase C chain. (SW:ATPL_ECOLI)" /codon_start=1 /transl_table=11 /product="membrane-bound ATP synthase, F0 sector, subunit c" /protein_id="NP_462769.1" /db_xref="GeneID:1255397" /translation="MENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPD LIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAVA" misc_feature complement(4079082..4079315) /gene="atpE" /locus_tag="STM3870" /note="F0F1 ATP synthase subunit C; Validated; Region: PRK06876" /db_xref="CDD:180739" regulatory complement(4079325..4079330) /regulatory_class="ribosome_binding_site" /gene="atpE" /locus_tag="STM3870" /note="putative RBS for atpE; RegulonDB:STMS1H003826" gene complement(4079365..4080196) /gene="atpB" /locus_tag="STM3871" /db_xref="GeneID:1255398" CDS complement(4079365..4080180) /gene="atpB" /locus_tag="STM3871" /note="important for FO assembly; similar to E. coli membrane-bound ATP synthase, F0 sector, subunit a (AAC76761.1); Blastp hit to AAC76761.1 (271 aa), 96% identity in aa 1 - 271" /codon_start=1 /transl_table=11 /product="membrane-bound ATP synthase, F0 sector, subunit a" /protein_id="NP_462770.1" /db_xref="GeneID:1255398" /translation="MASENMTPQEYIGHHLNNLQLDLRTFSLVDPQNPPATFWTLNID SMFFSVVLGLLFLVMFRSVAKKATSGVPGKFQTAIELIVGFVHGSVKDMYHGKSKLIA PLALTIFVWVFLMNLMDLLPIDLLPYIAEHWLGLPATRVVPSADVNITLSMALGVFIL ILFYSIKMKGIGGFAKELTLQPFNHWAFIPVNLILEGVSLLSKPVSLGLRLFGNMYAG ELIFILIAGLLPWWSQWILNVPWAIFHILIITLQAFIFMVLTIVYLSMASEEH" misc_feature complement(4079368..4080069) /gene="atpB" /locus_tag="STM3871" /note="F0F1 ATP synthase subunit A; Validated; Region: PRK05815" /db_xref="CDD:235617" gene complement(4080189..4080689) /gene="atpI" /locus_tag="STM3872" /db_xref="GeneID:1255399" CDS complement(4080189..4080569) /gene="atpI" /locus_tag="STM3872" /note="similar to E. coli membrane-bound ATP synthase, dispensable protein, affects expression of atpB (AAC76762.1); Blastp hit to AAC76762.1 (130 aa), 91% identity in aa 5 - 130" /codon_start=1 /transl_table=11 /product="membrane-bound ATP synthase subunit, F1-F0-type proton-ATPase" /protein_id="NP_462771.1" /db_xref="GeneID:1255399" /translation="MSVSLVSRNVARKLLFIQFLAVIASGLLFCLKDPFWGISAVCGG LAVALPNMLFMIFAWRHQAHTPAKGRVSWTFAFGEAFKVLAMLVLLVVALAVLKAVFL PLIVTWVLVLVVQILAPAVINNKG" misc_feature complement(4080198..4080569) /gene="atpI" /locus_tag="STM3872" /note="F0F1 ATP synthase subunit I; Validated; Region: PRK08049" /db_xref="CDD:181208" regulatory complement(4080191..4080196) /regulatory_class="ribosome_binding_site" /gene="atpI" /locus_tag="STM3872" /note="putative RBS for atpB; RegulonDB:STMS1H003827" regulatory complement(4080580..4080585) /regulatory_class="ribosome_binding_site" /gene="atpI" /locus_tag="STM3872" /note="putative RBS for atpI; RegulonDB:STMS1H003828" regulatory complement(4080665..4080673) /regulatory_class="minus_10_signal" /gene="atpI" /locus_tag="STM3872" /note="putative -10_signal for atpI; RegulonDB:STMLTH004621" regulatory complement(4080681..4080689) /regulatory_class="minus_35_signal" /gene="atpI" /locus_tag="STM3872" /note="putative -35_signal for atpI; RegulonDB:STMLTH004621" gene complement(4081185..4081820) /gene="gidB" /locus_tag="STM3873" /db_xref="GeneID:1255400" CDS complement(4081185..4081808) /gene="gidB" /locus_tag="STM3873" /note="similar to E. coli glucose-inhibited division; chromosome replication? (AAC76763.1); Blastp hit to AAC76763.1 (207 aa), 85% identity in aa 1 - 207" /codon_start=1 /transl_table=11 /product="associated with glucose-inhibited division" /protein_id="NP_462772.3" /db_xref="GeneID:1255400" /translation="MLNKLSRLLADAGISLTDHQKTLLVAYVDMLHKWNKAYNLTSVR DPNEMLVRHILDSIVVAPYLQGQRFIDVGTGPGLPGIPLAIVLPDAHFTLLDSLGKRV RFLRQVQHELKLENITPVQSRVEAYPSEPPFDGVISRAFASLNDMVSWCHHLPGEKGR FYALKGQLPGDEIASLPDNFSVESVEKLRVPQLEGERHLVIIKSNKV" misc_feature complement(4081191..4081808) /gene="gidB" /locus_tag="STM3873" /note="16S rRNA G527 N7-methylase RsmG (former glucose-inhibited division protein B) [Translation, ribosomal structure and biogenesis]; Region: RsmG; COG0357" /db_xref="CDD:440126" regulatory complement(4081815..4081820) /regulatory_class="ribosome_binding_site" /gene="gidB" /locus_tag="STM3873" /note="putative RBS for gidB; RegulonDB:STMS1H003829" gene complement(4081911..4083812) /gene="gidA" /locus_tag="STM3874" /db_xref="GeneID:1255401" CDS complement(4081911..4083800) /gene="gidA" /locus_tag="STM3874" /note="similar to E. coli glucose-inhibited division; chromosome replication? (AAC76764.1); Blastp hit to AAC76764.1 (629 aa), 97% identity in aa 1 - 629" /codon_start=1 /transl_table=11 /product="associated with glucose-inhibited division" /protein_id="NP_462773.1" /db_xref="GeneID:1255401" /translation="MFYQDPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQ MSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRV LYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLD GKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVSRLKTGTPPRIDARTIDFSVLAQQ HGDNPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRNNLDRSPMYAGVIEGIGPRY CPSIEDKVMRFADRNQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENA KIVRPGYAIEYDFFDPRDLKPTLESKFIHGLFFAGQINGTTGYEEAAAQGLLAGLNAA RLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTE MGRELGLVDDERWARFNEKLENIERERQRLKSTWVTPSAESADEVNAHLTTPLSREAS GEDLLRRPEMTYAQLTSLAAFAPALEDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNE NTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGM LRRSA" misc_feature complement(4081917..4083800) /gene="gidA" /locus_tag="STM3874" /note="tRNA U34 5-carboxymethylaminomethyl modifying enzyme MnmG/GidA [Translation, ribosomal structure and biogenesis]; Region: MnmG; COG0445" /db_xref="CDD:440214" regulatory complement(4083807..4083812) /regulatory_class="ribosome_binding_site" /gene="gidA" /locus_tag="STM3874" /note="putative RBS for gidA; RegulonDB:STMS1H003830" gene complement(4084179..4084622) /gene="mioC" /locus_tag="STM3875" /db_xref="GeneID:1255402" CDS complement(4084179..4084622) /gene="mioC" /locus_tag="STM3875" /note="similar to E. coli initiation of chromosome replication (AAC76765.1); Blastp hit to AAC76765.1 (147 aa), 87% identity in aa 1 - 147" /codon_start=1 /transl_table=11 /product="initiation of chromosome replication" /protein_id="NP_462774.1" /db_xref="GeneID:1255402" /translation="MADITLISGSTLGGAEYVAEHLAEKLEAAGFSTETVHGPLLEDL STSGIWLIISSTHGAGDIPDNLTPFYEDLQTQKPDLSAVRFGAIGIGSREYDTFCGAI EKIEAELKGAGAKQVGETLKINILEHEIPEDPAEIWLGSWINLLK" misc_feature complement(4084185..4084622) /gene="mioC" /locus_tag="STM3875" /note="FMN-binding protein MioC; Provisional; Region: PRK09004" /db_xref="CDD:181608" gene complement(4084712..4085268) /gene="asnC" /locus_tag="STM3876" /db_xref="GeneID:1255403" CDS complement(4084712..4085170) /gene="asnC" /locus_tag="STM3876" /note="AsnC family; similar to E. coli regulator for asnA, asnC and gidA (AAC76766.1); Blastp hit to AAC76766.1 (152 aa), 97% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="transcriptional regulator for asnA, gidA" /protein_id="NP_462775.1" /db_xref="GeneID:1255403" /translation="MENYQIDNLDRGILDALMGNARTAYAELAKQFGVSPGTIHVRVE KMKQAGIITGARIDVSPKQLGYDVGCFIGIILKSAKDYPSALARLESLDEVTEAYYTT GHYSIFIKVMCKSIDALQHVLINKIQTIDEIQSTETLIVLQNPIMRTIKP" misc_feature complement(4084715..4085170) /gene="asnC" /locus_tag="STM3876" /note="DNA-binding transcriptional regulator AsnC; Provisional; Region: PRK11179" /db_xref="CDD:183019" regulatory complement(4085176..4085181) /regulatory_class="ribosome_binding_site" /gene="asnC" /locus_tag="STM3876" /note="putative RBS for asnC; RegulonDB:STMS1H003831" gene 4085215..4086313 /gene="asnA" /locus_tag="STM3877" /db_xref="GeneID:1255404" regulatory 4085215..4085223 /regulatory_class="minus_35_signal" /gene="asnA" /locus_tag="STM3877" /note="putative -35_signal for asnA; RegulonDB:STMLTH004623" regulatory 4085239..4085247 /regulatory_class="minus_10_signal" /gene="asnA" /locus_tag="STM3877" /note="putative -10_signal for asnA; RegulonDB:STMLTH004623" regulatory complement(4085244..4085252) /regulatory_class="minus_10_signal" /gene="asnC" /locus_tag="STM3876" /note="putative -10_signal for asnC; RegulonDB:STMLTH004622" regulatory complement(4085260..4085268) /regulatory_class="minus_35_signal" /gene="asnC" /locus_tag="STM3876" /note="putative -35_signal for asnC; RegulonDB:STMLTH004622" regulatory 4085308..4085313 /regulatory_class="ribosome_binding_site" /gene="asnA" /locus_tag="STM3877" /note="putative RBS for asnA; RegulonDB:STMS1H003832" CDS 4085321..4086313 /gene="asnA" /locus_tag="STM3877" /EC_number="6.3.1.1" /note="similar to E. coli asparagine synthetase A (AAC76767.1); Blastp hit to AAC76767.1 (330 aa), 94% identity in aa 1 - 330" /codon_start=1 /transl_table=11 /product="asparagine synthetase A" /protein_id="NP_462776.1" /db_xref="GeneID:1255404" /translation="MKTAYIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGT QDNLSGCEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGEGLYTHMKALRPD EDRLSPLHSVYVDQWDWERVMGDGERQFSTLKSTVEAIWAGIKATEAEVHKQFGLAPF LPEQIQFVHSQELLARFPDLDAKGRERAIAKELGAVFLVGIGGKLSDGHRHDVRAPDY DDWSSASELGYAGLNGDILVWNPVLEDAFELSSMGIRVDADTLMRQLALTGDEDRLQL EWHQALLRGEMPQTIGGGIGQSRLTMLLLQLPHIGQVQCGVWPAQVRESIPAIL" misc_feature 4085321..4086310 /gene="asnA" /locus_tag="STM3877" /note="Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches...; Region: class_II_aaRS-like_core; cl00268" /db_xref="CDD:444800" misc_feature order(4085345..4085350,4085357..4085359,4085414..4085419, 4085486..4085488,4085492..4085494,4085498..4085500, 4085519..4085521,4085558..4085560,4085570..4085572, 4085609..4085611,4085621..4085626,4085630..4085632, 4086257..4086259,4086269..4086271,4086287..4086289) /gene="asnA" /locus_tag="STM3877" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238350" misc_feature order(4085540..4085542,4085549..4085551,4085618..4085620, 4085666..4085668,4085672..4085674,4085678..4085680, 4086023..4086025,4086062..4086064,4086071..4086073, 4086083..4086085,4086215..4086217) /gene="asnA" /locus_tag="STM3877" /note="active site" /db_xref="CDD:238350" gene complement(4086318..4087760) /gene="yieM" /locus_tag="STM3878" /db_xref="GeneID:1255405" CDS complement(4086318..4087742) /gene="yieM" /locus_tag="STM3878" /note="similar to E. coli orf, hypothetical protein (AAC76768.1); Blastp hit to AAC76768.1 (427 aa), 89% identity in aa 1 - 427" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462777.3" /db_xref="GeneID:1255405" /translation="MLAVSEEGMVEEMILALLASPQLVIFFEKFPRLKNAVTADLPRW REALRSRLKDARVPPELTEEVMCYQQSQLLSTPQFIVQLPQILALLHRLHSPYAAQAK QLTESNSTFTPALHTLFLQRWRLSLVVQATTLNQQLLEEEREQLLSDVQERMTLSGQL EPTLAENDNAAGRLWDMSAGQLKRGDYQLIVKYGEFLAAQPELMQLAEQLGRSREAKS VPKKDAPMETFRTLVREPATVPEQVDGIQQGDDILRLLPPELATLGITELEYEFYRRL VEKQLLTYRLHGEAWREKVTERPVVHQDVDEQPRGPFIVCVDTSGSMGGFNEQCAKAF CLALMRVALADNRRCFIMLFSTDVVRYELSGPEGIEQAIRFLSQRFRGGTDIASCFRA IIERMQGREWFDADAVVISDFIAQRLPDDVVSKVGELQRLHQHRFHAVAMSAHGKPGI MRIFDHIWRFDTGMRSRLLRRWRR" misc_feature complement(4086351..4087742) /gene="yieM" /locus_tag="STM3878" /note="ATPase RavA stimulator ViaA; Region: yieM; PRK10997" /db_xref="CDD:236815" misc_feature complement(order(4086507..4086509,4086591..4086593, 4086777..4086779,4086783..4086785,4086789..4086791)) /gene="yieM" /locus_tag="STM3878" /note="metal ion-dependent adhesion site (MIDAS); other site" /db_xref="CDD:238739" regulatory complement(4087755..4087760) /regulatory_class="ribosome_binding_site" /gene="yieM" /locus_tag="STM3878" /note="putative RBS for yieM; RegulonDB:STMS1H003833" gene complement(4087763..4089276) /gene="yieN" /locus_tag="STM3879" /db_xref="GeneID:1255406" CDS complement(4087763..4089259) /gene="yieN" /locus_tag="STM3879" /note="similar to E. coli putative 2-component regulator (AAC76769.1); Blastp hit to AAC76769.1 (506 aa), 86% identity in aa 9 - 506" /codon_start=1 /transl_table=11 /product="putative regulator protein" /protein_id="NP_462778.1" /db_xref="GeneID:1255406" /translation="MAHPHLLAERISRLSSALEKGLYERSHAIRLCLLAALSGESVFL LGPPGIAKSLIARRLKFAFQRARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYERLTT GYLPEAEIVFLDEIWKAGPAILNTLLTAINERHFRNGAFEEKIPMRLLVAASNELPEA DSSLEALYDRMLIRLWLDKVQDKANFRSMLVSQQDESDNPVPASLQVSDEEYQQWQKD IGAISLPDPVFELIFTLRQQLDNLPNAPYVSDRRWKKAIRLLQASAFFSGRDAVAPID LILLKDCLWYDAQSLNLMQQQLEILMTGHAWQQQAMLTRLGGIVQRRLQLQQQQSDKT AFTVIKEGGMFSRRPHYTLPPEASASTLTLLLQKPLKLHDMEVIHITFDRSALELWLT KGGEIRGKLNGIGFAQTLNMEVDNAQHLVVRDISLQGTRLALPGTAEDSMPAEIKQQL ETLENDWRQQHTRFSEQQHCLFIHSDWLGRIEASLQDVGEQIRQAKQC" misc_feature complement(4087766..4089259) /gene="yieN" /locus_tag="STM3879" /note="regulatory ATPase RavA; Provisional; Region: PRK13531" /db_xref="CDD:184118" regulatory complement(4089271..4089276) /regulatory_class="ribosome_binding_site" /gene="yieN" /locus_tag="STM3879" /note="putative RBS for yieN; RegulonDB:STMS1H003834" gene 4089596..4091475 /gene="kup" /locus_tag="STM3880" /db_xref="GeneID:1255407" regulatory 4089596..4089601 /regulatory_class="ribosome_binding_site" /gene="kup" /locus_tag="STM3880" /note="putative RBS for kup; RegulonDB:STMS1H003835" CDS 4089607..4091475 /gene="kup" /locus_tag="STM3880" /note="similar to E. coli low affinity potassium transport system (AAC76770.1); Blastp hit to AAC76770.1 (519 aa), 96% identity in aa 1 - 505" /codon_start=1 /transl_table=11 /product="KUP family low affinity potassium transport system" /protein_id="NP_462779.1" /db_xref="GeneID:1255407" /translation="MSTDNKQSLPAITLAAIGVVYGDIGTSPLYTLRECLSGQFGFGV ERDAVFGFLSLIFWLLIFVVSIKYLTFVMRADNAGEGGILTLMSLAGRNTSARTTSML VIMGLIGGSFFYGEVVITPAISVMSAIEGLEIVAPQLDTWIVPLSIIVLTLLFMIQKH GTGMVGKLFAPIMLTWFLILAVLGLRSIIANPEVLHALNPVWAVRFFLEYKTVSFIAL GAVVLSITGVEALYADMGHFGKFPIRLAWFTVVLPSLVLNYFGQGALLLKHPEAIKNP FFLLAPDWALIPLLILAALATVIASQAVISGVFSLTRQAVRLGYLSPMRIIHTSEMES GQIYIPFVNWLLYFAVVVVIVSFEHSSNLAAAYGIAVTGTMVLTSILSTTVARKNWHW NKYFVALILIAFLCVDIPLFSANLDKLLSGGWLPLSLGLIMFTIMTTWKSERFRLLRR MHEHGNSLEAMIASLEKSPPVRVPGTAVYMSRALSVIPFALLHNLKHNKVLHERVILL TLRTEDAPYVHNVRRVQIEQLSPTFWRVVASYGWRETPNVEEVFHRCGLEGLSCRMME TSFFMSHESLIVGKRPWYLRLRGKLYLLLQRNALRAPDQFEIPPNRVIELGTQVEI" misc_feature 4089607..4091472 /gene="kup" /locus_tag="STM3880" /note="low affinity potassium transporter Kup; Region: trkD; PRK10745" /db_xref="CDD:182693" gene 4091572..4092091 /gene="rbsD" /locus_tag="STM3881" /db_xref="GeneID:1255408" regulatory 4091572..4091580 /regulatory_class="minus_35_signal" /gene="rbsD" /locus_tag="STM3881" /note="putative -35_signal for rbsD; RegulonDB:STMLTH004625" regulatory 4091599..4091607 /regulatory_class="minus_10_signal" /gene="rbsD" /locus_tag="STM3881" /note="putative -10_signal for rbsD; RegulonDB:STMLTH004625" protein_bind 4091603..4091623 /gene="rbsD" /locus_tag="STM3881" /note="putative binding site for CRP, RegulonDB: STMS1H000093" /bound_moiety="CRP" regulatory 4091659..4091664 /regulatory_class="ribosome_binding_site" /gene="rbsD" /locus_tag="STM3881" /note="putative RBS for rbsD; RegulonDB:STMS1H003836" CDS 4091672..4092091 /gene="rbsD" /locus_tag="STM3881" /note="membrane-associated protein; similar to E. coli D-ribose high-affinity transport system; membrane-associated protein (AAC76771.1); Blastp hit to AAC76771.1 (151 aa), 87% identity in aa 13 - 151" /codon_start=1 /transl_table=11 /product="D-ribose high-affinity transport system" /protein_id="NP_462780.1" /db_xref="GeneID:1255408" /translation="MKKGTVLNSEISSVISRLGHTDTLVVCDAGLPIPNSTARIDMAL TQGVPSFMQVVDVVTREMQVEAAILATEIKQQNPQLHETLLTHLEQLQQHQGNTIKIS YTTHEQFKKLTADSQAVIRSGECSPYANVILCAGVTF" misc_feature 4091672..4092088 /gene="rbsD" /locus_tag="STM3881" /note="D-ribose pyranase; Provisional; Region: PRK11797" /db_xref="CDD:183318" gene 4092090..4093604 /gene="rbsA" /locus_tag="STM3882" /db_xref="GeneID:1255409" regulatory 4092090..4092095 /regulatory_class="ribosome_binding_site" /gene="rbsA" /locus_tag="STM3882" /note="putative RBS for rbsA; RegulonDB:STMS1H003837" CDS 4092099..4093604 /gene="rbsA" /locus_tag="STM3882" /note="ABC superfamily (atp_bind); similar to E. coli ATP-binding component of D-ribose high-affinity transport system (AAC76772.1); Blastp hit to AAC76772.1 (501 aa), 96% identity in aa 1 - 501" /codon_start=1 /transl_table=11 /product="D-ribose high-affinity transport protein" /protein_id="NP_462781.1" /db_xref="GeneID:1255409" /translation="MDALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKS TMMKVLTGIYTRDAGSLLWLGKETTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFL GREFVNRFGKIDWKKMYAEADHLLAKLNLRFKSDKLVGELSIGDQQMVEIAKVLSFES KVIIMDEPTDALTDTETDSLFRVIRELKSQGRGIVYISHRMKEIFEICDDVTVFRDGQ FIAEREVATLTEDSLIEMMVGRKLEDQYPHLDNAPGEIRLKVDNLCGPGVNDVSFVLR KGEILGISGLMGAGRTELMKVLYGAMPRTSGYVTLDGHEVVTRSPQDGLANGIVYISE DRKRDGLVLGMSVKENMSLTALDYFSRAGGSLKHKDEQQAVGDFIRLFNVKTPSMEQA IGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKADGLSIIL VSSEMPEVLGMSDRIIVMHEGHLSGEFTREQATQEVLMAAAVGKLNRVNQE" misc_feature 4092099..4093601 /gene="rbsA" /locus_tag="STM3882" /note="D-ribose transporter ATP binding protein; Provisional; Region: PRK10762" /db_xref="CDD:236755" gene 4093596..4094575 /gene="rbsC" /locus_tag="STM3883" /db_xref="GeneID:1255410" regulatory 4093596..4093601 /regulatory_class="ribosome_binding_site" /gene="rbsC" /locus_tag="STM3883" /note="putative RBS for rbsC; RegulonDB:STMS1H003838" CDS 4093610..4094575 /gene="rbsC" /locus_tag="STM3883" /note="ABC superfamily (membrane); similar to E. coli D-ribose high-affinity transport system (AAC76773.1); Blastp hit to AAC76773.1 (321 aa), 96% identity in aa 1 - 321" /codon_start=1 /transl_table=11 /product="D-ribose high-affinity transport protein (1st module, ATP-binding subunit)" /protein_id="NP_462782.1" /db_xref="GeneID:1255410" /translation="MTTQAVSGRRYFTKAWLLEQKSLIALLVLIAIVSTLSPNFFTVN NLFNILQQTSVNAIMAVGMTLVILTSGIDLSVGSLLALTGAVAASIVGVEVNALVAVA AALALGAAIGAVTGVIVAKGRVQAFIATLVMMLLLRGVTMVYTDGSPVNTGFTDNADL FGWFGIGRPLGVPTPVWIMAIVFIAAWYMLHHTRLGRYIYALGGNEAATRLSGISVSK VKIIVYSLCGLTASLAGIIEVARLSSAQPTAGTGYELDAIAAVVLGGTSLAGGKGRIV GTLIGALILGFLNNGLNLLGVSSYYQMIVKAVVILLAVLVDNKKQ" misc_feature 4093613..4094572 /gene="rbsC" /locus_tag="STM3883" /note="ribose ABC transporter permease protein; Reviewed; Region: rbsC; PRK09512" /db_xref="CDD:181922" misc_feature 4094228..4094284 /gene="rbsC" /locus_tag="STM3883" /note="TM-ABC transporter signature motif [active]" /db_xref="CDD:119321" gene 4094585..4095490 /gene="rbsB" /locus_tag="STM3884" /db_xref="GeneID:1255411" regulatory 4094585..4094590 /regulatory_class="ribosome_binding_site" /gene="rbsB" /locus_tag="STM3884" /note="putative RBS for rbsB; RegulonDB:STMS1H003839" CDS 4094600..4095490 /gene="rbsB" /locus_tag="STM3884" /note="ABC superfamily (peri_perm); D-ribose-binding periplasmic protein precursor. (SW:RBSB_SALTY)" /codon_start=1 /transl_table=11 /product="D-ribose transport protein" /protein_id="NP_462783.1" /db_xref="GeneID:1255411" /translation="MNMKKLATLVSAVALSATVSANAMAKDTIALVISTLNNPFFVSL KDGAQKEADKLGYNLVVLDSQNNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKM ANQAKIPVITLDRQATKGDVVSHIASDNVLGGKIAGDYIAKKAGEGAKVIELQGIAGT SAARERGEGFQQAVAAHKFNVLASQPADFDRTKGLNVMQNLLTAHPDVQAVFAQNDEM ALGALRALQTAGKADVMVVGFDGTPDGEKAVKDGKLAATIAQLPDQIGAKGVEVADKV LKGEKVQAKYPVDLKLVIKQ" misc_feature 4094600..4095484 /gene="rbsB" /locus_tag="STM3884" /note="ribose ABC transporter substrate-binding protein RbsB; Region: PRK10653" /db_xref="CDD:182620" misc_feature order(4094711..4094713,4094717..4094722,4094864..4094866, 4094939..4094944,4095083..4095085,4095095..4095097, 4095164..4095166,4095242..4095244,4095317..4095319, 4095377..4095379) /gene="rbsB" /locus_tag="STM3884" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:380546" gene 4095610..4096553 /gene="rbsK" /locus_tag="STM3885" /db_xref="GeneID:1255412" regulatory 4095610..4095615 /regulatory_class="ribosome_binding_site" /gene="rbsK" /locus_tag="STM3885" /note="putative RBS for rbsK; RegulonDB:STMS1H003840" CDS 4095624..4096553 /gene="rbsK" /locus_tag="STM3885" /EC_number="2.7.1.15" /note="similar to E. coli ribokinase (AAC76775.1); Blastp hit to AAC76775.1 (309 aa), 88% identity in aa 1 - 308" /codon_start=1 /transl_table=11 /product="ribokinase" /protein_id="NP_462784.1" /db_xref="GeneID:1255412" /translation="MKTAGNLIVLGSINADHILNLESFPTPGETVTGSHYQVAFGGKG ANQAVAAGRSGANIAFIACTGDDDIGDSIRKQLVSDRIDIAPVSVIKGESTGVALIFV NGEGENVIGIHAGANAALSPALVDAQRERIAQADALLMQLESPLESVLAAAKIAHQHH TTVALNPAPARELPDELLALVDIITPNETEAEKLTGVRVENDDDAAKAAQVLHDKGIR TVLITLGSRGVWASVDGEGRRVPGFSVEAVDTIAAGDTFNGAFITAILEETPLPEAIR FAHAAAAIAVTRKGAQPSVPWREEIEAFLHQQG" misc_feature 4095630..4096547 /gene="rbsK" /locus_tag="STM3885" /note="ribokinase; Provisional; Region: PRK11142" /db_xref="CDD:236858" misc_feature order(4095663..4095665,4095669..4095671,4095744..4095752, 4095759..4095761,4095915..4095917,4095921..4095923, 4095951..4095953,4095957..4095959,4096050..4096052, 4096374..4096379,4096386..4096388,4096494..4096496) /gene="rbsK" /locus_tag="STM3885" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238579" misc_feature order(4095672..4095674,4095678..4095680,4095693..4095713, 4095750..4095752,4095912..4095914,4095918..4095926, 4095942..4095965,4096128..4096130) /gene="rbsK" /locus_tag="STM3885" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238579" misc_feature order(4096182..4096184,4096290..4096298,4096305..4096307, 4096344..4096346,4096362..4096364,4096371..4096373, 4096380..4096385,4096392..4096394,4096458..4096460, 4096467..4096472,4096479..4096481) /gene="rbsK" /locus_tag="STM3885" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238579" gene 4096545..4097555 /gene="rbsR" /locus_tag="STM3886" /db_xref="GeneID:1255413" regulatory 4096545..4096550 /regulatory_class="ribosome_binding_site" /gene="rbsK" /locus_tag="STM3885" /note="putative RBS for rbsR; RegulonDB:STMS1H003841" CDS 4096557..4097555 /gene="rbsR" /locus_tag="STM3886" /note="similar to E. coli regulator for rbs operon (AAC76776.1); Blastp hit to AAC76776.1 (330 aa), 89% identity in aa 1 - 329" /codon_start=1 /transl_table=11 /product="transcriptional repressor for rbs operon (GalR/LacI family)" /protein_id="NP_462785.1" /db_xref="GeneID:1255413" /translation="MATMKDVARLAGVSTSTVSHVINKDRFVSETITEKVEAAIKSLN YAPSALARSLKLNQTRTIGMLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQ RMNRNLETLMQKRVDGLLLLCTETHQPSREIMERYPSIPTVMMDWSPFDGEGDSDLIQ DNSLLGGDLATQYLIDKGFTRIACITGPLDKTPARLRLEGYRAAMKRAGLAIPQGYEI TGDFEFGGGFDAMQALLAHQQRPQAVFTGNDAMAVGAYQALYQAGLRIPQDMAVIGYD DIELARYMTPPLTTIHQPKDELGELAIDVLIHRMAQPALQQQRLQLTPVLTVRGSV" misc_feature 4096566..4097552 /gene="rbsR" /locus_tag="STM3886" /note="transcriptional repressor RbsR; Provisional; Region: PRK10423" /db_xref="CDD:182448" gene complement(4097521..4098959) /gene="yieO" /locus_tag="STM3887" /db_xref="GeneID:1255414" CDS complement(4097521..4098948) /gene="yieO" /locus_tag="STM3887" /note="1st mdule; similar to E. coli putative transport protein (AAC76777.1); Blastp hit to AAC76777.1 (475 aa), 86% identity in aa 1 - 475" /codon_start=1 /transl_table=11 /product="putative MFS family tranport protein" /protein_id="NP_462786.1" /db_xref="GeneID:1255414" /translation="MTSKKARSMAGLPWIAAMAFFMQALDATILNTALPAIAHSLNRS PLAMQSAIISYTLTVAMLIPVSGWLADRFGTRRVFMVAVSLFTLGSLACALSSSLSEL VIFRVVQGVGGAMMMPVARLALLRAYPRSELLPVLNFVTMPGLVGPILGPVLGGVLVT WASWHWIFLINIPIGVAGILYARKYMPNFTTPRRKFDMTGFFLFGLSLVLFSSGMELF GEKIVATWIASAIIFCSIVLLLAYIRHARRHPTPLISLSLFKTRTFSVGIAGNLATRL GTGCVPFLMPLMLQVGFGYPALIAGCMMAPTALGSIIAKSTVTQVLRRLGYRKTLVGI TVFIGLMIAQFSFQSPAMPIWMLVLPLFILGMAMSTQFTAMNTITLADLTDDNASSGN SVLAVTQQLSISLGVAISAAVLRIYEGFAGTSTVEQFHYTFITMGAITIVSALMFMLL RAKDGNNLIKERHKSKPTHAPSKPE" misc_feature complement(4097551..4098909) /gene="yieO" /locus_tag="STM3887" /note="putative transporter; Provisional; Region: PRK10504" /db_xref="CDD:182502" regulatory complement(4098954..4098959) /regulatory_class="ribosome_binding_site" /gene="yieO" /locus_tag="STM3887" /note="putative RBS for yieO; RegulonDB:STMS1H003842" gene complement(4098960..4099678) /gene="yieP" /locus_tag="STM3888" /db_xref="GeneID:1255415" CDS complement(4098960..4099664) /gene="yieP" /locus_tag="STM3888" /note="similar to E. coli orf, hypothetical protein (AAC76778.1); Blastp hit to AAC76778.1 (181 aa), 82% identity in aa 1 - 181" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_462787.1" /db_xref="GeneID:1255415" /translation="MPLSAQQLAAQKNLSYVLAEKLAQRILKGDYAPGTILPGEIELG EQYGVSRTAVREAVKTLTAKGMVLPRPRIGTRVMPQGNWNFLDQELLTWWMTEENFHQ VVEHFLVMRISLEPQACLLAATLGTPEQKARLNALMEEMVALKKHFKRERWIEVDMAW HEHIYEMSANPFLISFATLFHSVYHTYFTSITYNEVVKLDLHQAIVDAIADGDGERAF QACQALLIAPNERPDN" misc_feature complement(4098990..4099640) /gene="yieP" /locus_tag="STM3888" /note="DNA-binding transcriptional regulator, FadR family [Transcription]; Region: FadR; COG2186" /db_xref="CDD:441789" regulatory complement(4099673..4099678) /regulatory_class="ribosome_binding_site" /gene="yieP" /locus_tag="STM3888" /note="putative RBS for yieP; RegulonDB:STMS1H003843" gene 4100145..4101688 /gene="rrsC" /locus_tag="STM3889" /db_xref="GeneID:1255416" rRNA 4100145..4101688 /gene="rrsC" /locus_tag="STM3889" /product="16S ribosomal RNA" /db_xref="GeneID:1255416" gene 4101772..4101844 /gene="gltU" /locus_tag="STM3890" /db_xref="GeneID:1255417" tRNA 4101772..4101844 /gene="gltU" /locus_tag="STM3890" /product="tRNA-Trp" /db_xref="GeneID:1255417" gene 4102041..4105034 /gene="rrlC" /locus_tag="STM3891" /db_xref="GeneID:1255418" rRNA 4102041..4105034 /gene="rrlC" /locus_tag="STM3891" /product="23S ribosomal RNA" /db_xref="GeneID:1255418" gene 4105041..4105139 /gene="9S" /locus_tag="STM3893" /db_xref="GeneID:1255419" ncRNA 4105041..4105139 /ncRNA_class="other" /gene="9S" /locus_tag="STM3893" /product="regulatory RNA" /db_xref="GeneID:1255419" gene 4105124..4105243 /gene="rrfC" /locus_tag="STM3894" /db_xref="GeneID:1255420" rRNA 4105124..4105243 /gene="rrfC" /locus_tag="STM3894" /product="5S ribosomal RNA" /db_xref="GeneID:1255420" gene 4105296..4105375 /gene="aspT" /locus_tag="STM3895" /db_xref="GeneID:1255421" tRNA 4105296..4105375 /gene="aspT" /locus_tag="STM3895" /product="tRNA-Sec" /db_xref="GeneID:1255421" gene 4105381..4105453 /gene="trpT" /locus_tag="STM3896" /db_xref="GeneID:1255422" tRNA 4105381..4105453 /gene="trpT" /locus_tag="STM3896" /product="tRNA-OTHER" /db_xref="GeneID:1255422" gene complement(4105558..4106406) /gene="yifA" /locus_tag="STM3897" /db_xref="GeneID:1255423" CDS complement(4105558..4106406) /gene="yifA" /locus_tag="STM3897" /note="similar to E. coli orf, hypothetical protein (AAC77483.1); Blastp hit to AAC77483.1 (198 aa), 83% identity in aa 1 - 196" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_462788.3" /db_xref="GeneID:1255423" /translation="MESTVDTELLKTFLEVSRTRHFGRAAEALYLTQSAVSFRIRQLE NQLGVNLFTRHRNNIRLTTAGEKLLPYAETLMNTWQAARKEVAHTSRHNEFSIGASAS LWECMLNAWLGRLYQLQEPQSGLQFEARIAQRQSLVKQLHERQLDLLITTEAPKMDEF SSQLLGHFTLALYCSSPARKKSELNYLRLEWGPDFQQHETGLIAADEVPVLTTSSAEL ARQQLSALNGCSWLPVNWANEKGGLHTVADSATLSRPLYAIWLQNSDKYSLICDLLKT DVLDEQ" misc_feature complement(4105561..4106394) /gene="yifA" /locus_tag="STM3897" /note="HTH-type transcriptional regulator HdfR; Region: PRK03601" /db_xref="CDD:235137" gene 4106499..4106851 /gene="yifE" /locus_tag="STM3898" /db_xref="GeneID:1255424" regulatory 4106499..4106504 /regulatory_class="ribosome_binding_site" /gene="yifE" /locus_tag="STM3898" /note="putative RBS for yifE; RegulonDB:STMS1H003848" CDS 4106513..4106851 /gene="yifE" /locus_tag="STM3898" /note="similar to E. coli orf, hypothetical protein (AAC77485.1); Blastp hit to AAC77485.1 (112 aa), 95% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="putative LysR type transcriptional regulator with pssR" /protein_id="NP_462789.1" /db_xref="GeneID:1255424" /translation="MAESFTTTNRYFDNKHYPRGFSRHGDFTIKEAQLLERHGHAFND LDLGKREPVTEEEKLFVAVCRGEREPVTDAERVWSKYMTRIKRPKRFHTLSGGKPQVE GAEDYTEADD" misc_feature 4106513..4106848 /gene="yifE" /locus_tag="STM3898" /note="hypothetical protein; Provisional; Region: PRK11027" /db_xref="CDD:236825" gene complement(4106876..4108407) /gene="yifB" /locus_tag="STM3899" /db_xref="GeneID:1255425" CDS complement(4106876..4108396) /gene="yifB" /locus_tag="STM3899" /note="hypothetical 55.0 Kda protein in pssR-ilLl intergenic region. (SW:YIFB_SALTY)" /codon_start=1 /transl_table=11 /product="putative magnesium chelatase, subunit ChlI" /protein_id="NP_462790.1" /db_xref="GeneID:1255425" /translation="MSLAIVHTRAALGVNAPPITIEVHISNGLPGLTMVGLPETTVKE ARDRVRSAIINSGYEFPAKKITINLAPADLPKEGGRYDLPIAVALLAASEQLTASNLE AYELVGELALTGALRGVPGAISSATEAIRAGRNIIVATENAAEVGLISKEGCFIADHL QTVCAFLEGKHALERPLAQDMASPTATADLRDVIGQEQGKRGLEITAAGGHNLLLIGP PGTGKTMLASRLSGILPPLSNEEALESAAILSLVNADTVQKRWQQRPFRSPHHSASLT AMVGGGAIPAPGEISLAHNGILFLDELPEFERRTLDALREPIESGQIHLSRTRAKITY PARFQLIAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGI LSQHASKGESSATVKKRVIAAHERQYRRQKKLNARLEGREIQKYCVLHHDDARWLEDT LVHLGLSIRAWQRLLKVARTIADIELADQISRQHLQEAVSYRAIDRLLIHLQKLLA" misc_feature complement(4106879..4108396) /gene="yifB" /locus_tag="STM3899" /note="ATP-dependent protease; Region: PRK09862" /db_xref="CDD:182120" regulatory complement(4108402..4108407) /regulatory_class="ribosome_binding_site" /gene="yifB" /locus_tag="STM3899" /note="putative RBS for yifB; RegulonDB:STMS1H003849" gene 4108561..4108846 /gene="ilvL" /locus_tag="STM3900" /db_xref="GeneID:1255426" regulatory 4108561..4108569 /regulatory_class="minus_35_signal" /gene="ilvL" /locus_tag="STM3900" /note="putative -35_signal for ilvL; RegulonDB:STMLTH004627" regulatory 4108585..4108593 /regulatory_class="minus_10_signal" /gene="ilvL" /locus_tag="STM3900" /note="putative -10_signal for ilvL; RegulonDB:STMLTH004627" regulatory 4108734..4108739 /regulatory_class="ribosome_binding_site" /gene="ilvL" /locus_tag="STM3900" /note="putative RBS for ilvL; RegulonDB:STMS1H003850" CDS 4108748..4108846 /gene="ilvL" /locus_tag="STM3900" /note="ilvGmedA operon leader peptide (attenuator peptide). (SW:LPID_ECOLI)" /codon_start=1 /transl_table=11 /product="ilvGEDA operon leader peptide" /protein_id="NP_462791.1" /db_xref="GeneID:1255426" /translation="MTALLRVISLVVISVVVIIIPPCGAALGRGKA" misc_feature 4108748..4108843 /gene="ilvL" /locus_tag="STM3900" /note="ilv operon leader peptide; Region: PRK10424" /db_xref="CDD:170429" gene 4108972..4110632 /gene="ilvG" /locus_tag="STM3901" /db_xref="GeneID:1255427" regulatory 4108972..4108977 /regulatory_class="ribosome_binding_site" /gene="ilvG" /locus_tag="STM3901" /note="putative RBS for ilvG; RegulonDB:STMS1H003851" CDS 4108986..4110632 /gene="ilvG" /locus_tag="STM3901" /EC_number="2.2.1.6" /note="fragment 1; cryptic; similar to E. coli acetolactate synthase II, large subunit, cryptic, interrupted (AAC77488.1); Blastp hit to AAC77488.1 (327 aa), 93% identity in aa 1 - 325" /codon_start=1 /transl_table=11 /product="acetolactate synthase II, large subunit" /protein_id="NP_462792.1" /db_xref="GeneID:1255427" /translation="MNGAQWVVHALRAQGVKTVFGYPGGAIMPVYDALYDGGVEHLLC RHEQGAAMAAIGYARSTGKTGVCIATSGPGATNLITGLADALLDSVPVVAITGQVSAP FIGTDAFQEVDVLGLSLACTKHSFLVQSLEELPRIMAEAFEVANAGRPGPVLVDIPKD IQLASGELEPWFTTVANEATFPQADVEQARQMLEQAKKPMLYVGGGVGMAQAVPALRK FIAVTQMPVTCTLKGLGAVEADYPYYLGMLGMHGTKAANFAVQECDLLIAVGARFDDR VTGKLNTFAPNASVIHMDIDPAEMNKLRQAHVALQGDLNSLLPALQQPLKIDAWRQSC AELRAEHAWRYDHPGETIYAPLLLKQLSERKPADSVVTTDVGQHQMWSAQHMTYTRPE NFITSSGLGTMGFGLPAAVGAQVARPNDTVICISGDGSFMMNVQELGTVKRKQLPLKI VLLDNQRLGMVRQWQQLFFQERYSETTLTDNPDFLMLASAFGIPGQHITRKDQVEAAL DTMLASEGPYLLHVSIDELENVWPLVPPGASNSEMLEKLS" misc_feature 4108986..4110629 /gene="ilvG" /locus_tag="STM3901" /note="acetolactate synthase 2 catalytic subunit; Reviewed; Region: PRK08978" /db_xref="CDD:181601" gene 4110615..4110892 /gene="ilvM" /locus_tag="STM3902" /db_xref="GeneID:1255428" regulatory 4110615..4110620 /regulatory_class="ribosome_binding_site" /gene="ilvM" /locus_tag="STM3902" /note="putative RBS for ilvM; RegulonDB:STMS1H003852" CDS 4110632..4110892 /gene="ilvM" /locus_tag="STM3902" /EC_number="2.2.1.6" /EC_number="4.1.3.-" /note="similar to E. coli acetolactate synthase II, valine insensitive, small subunit (AAC77489.1); Blastp hit to AAC77489.1 (87 aa), 93% identity in aa 2 - 87" /codon_start=1 /transl_table=11 /product="acetolactate synthase II, small subunit" /protein_id="NP_462793.3" /db_xref="GeneID:1255428" /translation="MQHQVNVSARFNPETLERVLRVVRHRGFQVCSMNMEAATDAQNI NIELTVASPRSVDLLFSQLSKLVDVAHVAICQSAATSQQIRA" misc_feature 4110632..4110856 /gene="ilvM" /locus_tag="STM3902" /note="acetolactate synthase 2 small subunit; Region: ilvM; PRK11152" /db_xref="CDD:236862" gene 4110778..4111839 /gene="ilvE" /locus_tag="STM3903" /db_xref="GeneID:1255429" regulatory 4110778..4110786 /regulatory_class="minus_35_signal" /gene="ilvM" /locus_tag="STM3902" /note="putative -35_signal for ilvE; RegulonDB:STMLTH004628" regulatory 4110802..4110810 /regulatory_class="minus_10_signal" /gene="ilvM" /locus_tag="STM3902" /note="putative -10_signal for ilvE; RegulonDB:STMLTH004628" regulatory 4110899..4110904 /regulatory_class="ribosome_binding_site" /gene="ilvE" /locus_tag="STM3903" /note="putative RBS for ilvE; RegulonDB:STMS1H003853" CDS 4110910..4111839 /gene="ilvE" /locus_tag="STM3903" /EC_number="2.6.1.42" /note="branched-chain amino acid aminotransferase. (SW:ILVE_SALTY)" /codon_start=1 /transl_table=11 /product="branched-chain amino-acid aminotransferase" /protein_id="NP_462794.1" /db_xref="GeneID:1255429" /translation="MTTKKADYIWFNGEMVRWEDAKVHVMSHALHYGTSVFEGIRCYD SHKGPVVFRHREHMQRLRDSAKIYRFPVSQSIDELMEACRDVIRKNNLTSAYIRPLVF VGDVGMGVNPPPGYTTDVIIAAFPWGAYLGAEALDQGIDAMVSSWNRAAPNTIPTAAK AGGNYLSSLLVGSEARRHGYQEGIALDVNGYISEGAGENLFEVKDGVLFTPPFTSSAL PGITRDAIIKLAKELGIEVREQVLSRESLYLADEVFMSGTAAEITPVRSVDGIQVGEG RCGPVTKRIQQAFFGLFTGETEDKWGWLDPVNS" misc_feature 4110910..4111830 /gene="ilvE" /locus_tag="STM3903" /note="branched-chain amino acid transaminase; Region: PRK06606" /db_xref="CDD:235841" misc_feature order(4110973..4110987,4110994..4111008,4111012..4111014, 4111018..4111020,4111108..4111110,4111201..4111203, 4111207..4111209,4111225..4111233,4111243..4111245, 4111270..4111272,4111393..4111395,4111408..4111410, 4111414..4111416,4111426..4111428,4111468..4111470) /gene="ilvE" /locus_tag="STM3903" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:238798" misc_feature order(4111003..4111005,4111018..4111020,4111087..4111089, 4111237..4111239,4111387..4111389,4111402..4111404, 4111489..4111491,4111570..4111575,4111681..4111683) /gene="ilvE" /locus_tag="STM3903" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:238798" misc_feature 4111387..4111389 /gene="ilvE" /locus_tag="STM3903" /note="catalytic residue [active]" /db_xref="CDD:238798" gene 4111982..4113850 /gene="ilvD" /locus_tag="STM3904" /db_xref="GeneID:1255430" regulatory 4111982..4111987 /regulatory_class="ribosome_binding_site" /gene="ilvD" /locus_tag="STM3904" /note="putative RBS for ilvD; RegulonDB:STMS1H003854" CDS 4112000..4113850 /gene="ilvD" /locus_tag="STM3904" /EC_number="4.2.1.9" /note="dihydroxy-acid dehydratase. (SW:ILVD_SALTY)" /codon_start=1 /transl_table=11 /product="dihydroxyacid dehydratase" /protein_id="NP_462795.1" /db_xref="GeneID:1255430" /translation="MPKYRSATTTHGRNMAGARALWRATGMTDSDFGKPIIAVVNSFT QFVPGHVHLRDLGKLVAEQIEASGGVAKEFNTIAVDDGIAMGHGGMLYSLPSRELIAD SVEYMVNAHCADAMVCISNCDKITPGMLMASLRLNIPVIFVSGGPMEAGKTKLSDKII KLDLVDAMIQGADPKVSDDQSNQVERSACPTCGSCSGMFTANSMNCLTEALGLSQPGN GSLLATHADRKQLFLNAGKRIVELTKRYYEQNDESALPRNIASKAAFENAMTLDIAMG GSTNTVLHLLAAAQEAEIDFTMSDIDKLSRKVPQLCKVAPSTQKYHMEDVHRAGGVLG ILGELDRAGLLNRNVKNVLGLTLPQTLEQYDITVTQDEAVKKMFRAGPAGIRTTQAFS QDCRWDSLDDDRAAGCIRSLEYAYSKDGGLAVLYGNFAENGCIVKTAGVDDSILKFTG PAKVYESQDDAVEAILGGKVVEGDVVVIRYEGPKGGPGMQEMLYPTSFLKSMGLGKAC ALITDGRFSGGTSGLSIGHVSPEAASGGTIALIEDGDTIAIDIPNRSIQLQLSEAEIA ARREAQEARGDKAWTPKNRQRQVSFALRAYASLATSADKGAVRDKSKLGG" misc_feature 4112003..4113847 /gene="ilvD" /locus_tag="STM3904" /note="dihydroxy-acid dehydratase; Provisional; Region: PRK12448" /db_xref="CDD:237104" gene 4113843..4115397 /gene="ilvA" /locus_tag="STM3905" /db_xref="GeneID:1255431" regulatory 4113843..4113848 /regulatory_class="ribosome_binding_site" /gene="ilvA" /locus_tag="STM3905" /note="putative RBS for ilvA; RegulonDB:STMS1H003855" CDS 4113853..4115397 /gene="ilvA" /locus_tag="STM3905" /EC_number="4.3.1.19" /note="threonine dehydratase biosynthetic. (SW:THD1_SALTY)" /codon_start=1 /transl_table=11 /product="threonine deaminase" /protein_id="NP_462796.1" /db_xref="GeneID:1255431" /translation="MAESQPLSVAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRL DNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSARLG VKSLIVMPKATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELAQQQGFTWVPPFDHP MVIAGQGTLALELLQQDSHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSA CLKAALEAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSDAICAAMKD LFEDVRAVAEPSGALALAGMKKYIAQHNIRGERLAHVLSGANVNFHGLRYVSERCELG EQREALLAVTIPEEKGSFLKFCQLLGGRMVTEFNYRFADAKNACIFVGVRVSQGLEER KEIITQLCDGGYSVVDLSDDEMAKLHVRYMVGGRPSKPLQERLYSFEFPESPGALLKF LHTLGTHWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLHELGYECHDESNNPAF RFFLAG" misc_feature 4113889..4115391 /gene="ilvA" /locus_tag="STM3905" /note="threonine ammonia-lyase IlvA; Region: PRK09224" /db_xref="CDD:236417" gene 4115677..4115998 /locus_tag="STM3906" /db_xref="GeneID:1255432" regulatory 4115677..4115682 /regulatory_class="ribosome_binding_site" /locus_tag="STM3906" /note="putative RBS for STM3906; RegulonDB:STMS1H003856" CDS 4115681..4115998 /locus_tag="STM3906" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462797.1" /db_xref="GeneID:1255432" /translation="MGSSLEDLLAFPITVRKAVGYQLHKIQYGIEPDDWKPFSEIGAG VNEIRIRDNNGIYRVMYVAKFEEALYVLHSFQKQTQQTSQHDKNIARTRYNRVVQQRR NSL" misc_feature 4115687..4115989 /locus_tag="STM3906" /note="Phage-related protein [Mobilome: prophages, transposons]; Region: COG4679" /db_xref="CDD:443715" gene 4115989..4116336 /locus_tag="STM3907" /db_xref="GeneID:1255433" regulatory 4115989..4115994 /regulatory_class="ribosome_binding_site" /locus_tag="STM3906" /note="putative RBS for STM3907; RegulonDB:STMS1H003857" CDS 4115995..4116336 /locus_tag="STM3907" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462798.1" /db_xref="GeneID:1255433" /translation="MIAKTDSDIRHVTPSGGNVFADLGFHKQDAEKFYADSLNEIENT LAIKQQLMEEITLWITQNQMKQAEVATVLHISRPRVSDVVNKKCSKFTIDALVNMLSR IGKPVRVMVGP" misc_feature 4116013..4116333 /locus_tag="STM3907" /note="Predicted DNA-binding protein, XRE-type HTH domain [General function prediction only]; Region: COG5606" /db_xref="CDD:444337" gene complement(4116339..4117418) /gene="ilvY" /locus_tag="STM3908" /db_xref="GeneID:1255434" CDS complement(4116339..4117226) /gene="ilvY" /locus_tag="STM3908" /note="similar to E. coli positive regulator for ilvC (AAC77493.1); Blastp hit to AAC77493.1 (297 aa), 97% identity in aa 1 - 295" /codon_start=1 /transl_table=11 /product="positive LysR family regulator for ilvC" /protein_id="NP_462799.1" /db_xref="GeneID:1255434" /translation="MDLRDLKTFLHLAESRHFGRSARAMHVSPSTLSRQIQRLEEDLG QPLFVRDNRTVTLTEAGEELRVFAQQTLLQYQQLRHTLDQQGPSLSGELHIFCSVTAA YSHLPPILDRFRAEHPSVEIKLTTGDAADAMEKVVTGEADLAIAGKPETLPGAVAFSM LENLAVVLIAPALPCPVRNQVSVDKPDWSTVPFIMADQGPVRRRIELWFRRHKISNPQ IYATVGGHEAMVSMVALGCGVALLPEVVLENSPEPVRNRVMILERSDEKTPFELGVCA QKKRLHEPLIDAFWKILPN" misc_feature complement(4116342..4117154) /gene="ilvY" /locus_tag="STM3908" /note="HTH-type transcriptional activator IlvY; Region: PRK11716" /db_xref="CDD:236961" regulatory complement(4117235..4117240) /regulatory_class="ribosome_binding_site" /gene="ilvY" /locus_tag="STM3908" /note="putative RBS for ilvY; RegulonDB:STMS1H003858" protein_bind complement(4117236..4117271) /gene="ilvY" /locus_tag="STM3908" /note="putative binding site for IlvY, RegulonDB: STMS1H000236" /bound_moiety="IlvY" gene 4117247..4118865 /gene="ilvC" /locus_tag="STM3909" /db_xref="GeneID:1255435" protein_bind 4117247..4117275 /gene="ilvC" /locus_tag="STM3909" /note="putative binding site for IlvY, RegulonDB: STMS1H000237" /bound_moiety="IlvY" regulatory 4117247..4117255 /regulatory_class="minus_35_signal" /gene="ilvC" /locus_tag="STM3909" /note="putative -35_signal for ilvC; RegulonDB:STMLTH004630" regulatory 4117274..4117282 /regulatory_class="minus_10_signal" /gene="ilvC" /locus_tag="STM3909" /note="putative -10_signal for ilvC; RegulonDB:STMLTH004630" protein_bind complement(4117286..4117293) /gene="ilvY" /locus_tag="STM3908" /note="putative binding site for IlvY, RegulonDB: STMS1H000238" /bound_moiety="IlvY" protein_bind 4117287..4117294 /gene="ilvC" /locus_tag="STM3909" /note="putative binding site for IlvY, RegulonDB: STMS1H000239" /bound_moiety="IlvY" regulatory 4117375..4117380 /regulatory_class="ribosome_binding_site" /gene="ilvC" /locus_tag="STM3909" /note="putative RBS for ilvC; RegulonDB:STMS1H003859" CDS 4117390..4118865 /gene="ilvC" /locus_tag="STM3909" /EC_number="1.1.1.86" /note="ketol-acid reductoisomerase. (SW:ILVC_SALTY)" /codon_start=1 /transl_table=11 /product="ketol-acid reductoisomerase" /protein_id="NP_462800.1" /db_xref="GeneID:1255435" /translation="MANYFNTLNLRQQLAQLGKCRFMGRDEFADGASYLQGKKVVIVG CGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLV VNLTPDKQHSDVVRSVQPLMKDGAALGYSHGFNIVEVGEQIRKDITVVMVAPKCPGTE VREEYKRGFGVPTLIAVHPENDPQGEGMAIAKAWAAATGGHRAGVLESSFVAEVKSDL MGEQTILCGMLQAGSLLCFDKLVAEGTDPAYAEKLIQFGWETITEALKQGGITLMMDR LSNPAKLRAYALSEQLKEIMAPLFQKHMDDIISGEFSSGMMADWANDDKKLLTWREET GKTAFETAPQYEGKIGEQEYFDKGVLMIAMVKAGVELAFETMVDSGIIEESAYYESLH ELPLIANTIARKRLYEMNVVISDTAEYGNYLFSYACVPLLKPFMAELQPGDLGSAIPE GAVDNAQLRDVNDAIRSHAIEQVGKKLRGYMTDMKRIAVAG" misc_feature 4117393..4118853 /gene="ilvC" /locus_tag="STM3909" /note="ketol-acid reductoisomerase; Validated; Region: PRK05225" /db_xref="CDD:235368" regulatory complement(4117394..4117402) /regulatory_class="minus_10_signal" /gene="ilvY" /locus_tag="STM3908" /note="putative -10_signal for ilvY; RegulonDB:STMLTH004629" regulatory complement(4117410..4117418) /regulatory_class="minus_35_signal" /gene="ilvY" /locus_tag="STM3908" /note="putative -35_signal for ilvY; RegulonDB:STMLTH004629" gene complement(4118957..4119250) /gene="ppiC" /locus_tag="STM3910" /db_xref="GeneID:1255436" CDS complement(4118957..4119238) /gene="ppiC" /locus_tag="STM3910" /EC_number="5.2.1.8" /note="similar to E. coli peptidyl-prolyl cis-trans isomerase C (rotamase C) (AAC76780.1); Blastp hit to AAC76780.1 (93 aa), 94% identity in aa 1 - 92" /codon_start=1 /transl_table=11 /product="peptidyl-prolyl cis-trans isomerase C" /protein_id="NP_462801.1" /db_xref="GeneID:1255436" /translation="MAKMAAALHILVKEEKLALDLLEQIKNGGDFEKLAKKHSICPSG KKGGHLGEFRQGQMVPAFDKVVFSCPVLEPTGPLHTQFGYHIIKVLYRK" misc_feature complement(4118960..4119238) /gene="ppiC" /locus_tag="STM3910" /note="peptidyl-prolyl cis-trans isomerase C; Provisional; Region: PRK15441" /db_xref="CDD:185338" regulatory complement(4119245..4119250) /regulatory_class="ribosome_binding_site" /gene="ppiC" /locus_tag="STM3910" /note="putative RBS for ppiC; RegulonDB:STMS1H003860" gene 4119527..4119676 /locus_tag="STM3911" /db_xref="GeneID:1255437" CDS 4119527..4119676 /locus_tag="STM3911" /note="similar to E. coli required for NMN transport (AAC73838.1); Blastp hit to AAC73838.1 (239 aa), 61% identity in aa 200 - 238" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462802.1" /db_xref="GeneID:1255437" /translation="MPVGNHAVQGVYAMSLEYVLLTAIALMGSFSWIKSAQRNGYMPL AARAC" misc_feature <4119533..4119664 /locus_tag="STM3911" /note="Nicotinamide mononucleotide transporter; Region: NMN_transporter; cl01256" /db_xref="CDD:470137" gene 4119776..4121800 /gene="rep" /locus_tag="STM3912" /db_xref="GeneID:1255438" CDS 4119776..4121800 /gene="rep" /locus_tag="STM3912" /EC_number="3.6.1.-" /note="single-stranded DNA dependent ATPase; similar to E. coli rep helicase, a single-stranded DNA dependent ATPase (AAC76783.1); Blastp hit to AAC76783.1 (673 aa), 96% identity in aa 1 - 673" /codon_start=1 /transl_table=11 /product="rep helicase" /protein_id="NP_462803.1" /db_xref="GeneID:1255438" /translation="MRLNPGQQHAVEFVTGPCLVLAGAGSGKTRVITNKIAHLIRGCG YQARHIAAVTFTNKAAREMKERVGQTLGRKEARGLMISTFHTLGLDIIKREYAALGMK SNFSLFDDTDQVALLKELTEGLIEDDKVLLQQLISTISNWKNDLKTPAQAAAGAKGER DRIFAHCYGLYDAHMKACNVLDFDDLILLPTLLLQRNDEVRERWQNKIRYLLVDEYQD TNTSQYELVKLLVGQRARFTVVGDDDQSIYSWRGARPQNLVLLSQDFPALQVIKLEQN YRSSGRILKAANILIANNPHVFEKRLFSELGYGAELKVLSANNEEHEAERVTGELIAH HFVNKTQYKDYAILYRGNHQSRVFEKFLMQNRIPYKISGGTSFFSRPEIKDLLAYLRV LTNPDDDSAFLRIVNTPKREIGPATLQKLGEWAMTRNKSLFTASFDMGLSQKLTGRGY DSLTRFTHWLGEIQRLAEREPVAAVRDLIHGIDYESWLYETSPSPKAAEMRMKNVNQL FSWMTEMLEGNELDEPMTLTQVVTRFTLRDMMERGESEEELDQVQLMTLHASKGLEFP YVYMVGMEEGFLPHQSSIDEDNIEEERRLAYVGITRAQKELTFTLCKERRQYGELVRP EPSRFLLELPQDDLIWEQERKVVSAEERMQKGQSHLANLKAMMAAKRAKS" misc_feature 4119776..4121791 /gene="rep" /locus_tag="STM3912" /note="ATP-dependent DNA helicase Rep; Provisional; Region: PRK10919" /db_xref="CDD:182838" gene complement(4121840..4123334) /gene="gppA" /locus_tag="STM3913" /db_xref="GeneID:1255439" CDS complement(4121840..4123321) /gene="gppA" /locus_tag="STM3913" /EC_number="3.6.1.40" /note="similar to E. coli guanosine pentaphosphatase; exopolyphosphatase (AAC76784.1); Blastp hit to AAC76784.1 (494 aa), 89% identity in aa 1 - 493" /codon_start=1 /transl_table=11 /product="exopolyphosphatase" /protein_id="NP_462804.1" /db_xref="GeneID:1255439" /translation="MNSTSLYAAIDLGSNSFHMLVVREAAGSIQTLTRIKRKVRLAAG LNNDNHLSAEAMERGWQCLRLFAERLQDIPQPQIRVVATATLRLAVNAGEFIAKAQTI LGCPVQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQTTSLFSLS MGCVTWLERYFSDRNLAQENFDDAEKAARDVLRPVADELRFHGWKVCVGASGTVQALQ EIMMAQGMDERITLAKLQQLKQRAIQCGRLEELEIEGLTLERALVFPSGLAILIAIFT ELNIQSMTLAGGALREGLVYGMLHLAVDQDIRSRTLRNIQRRFIVDTDQANRVAKLAD NFLKQVENAWHIEPISRELLLSACQLHEIGLSVDFKQAPYHAAYLVRHLDLPGYTPAQ KKLLATLLLNQTNPVDLSSLHQQNAVPPRVAEQLCRLLRLAILFAGRRRDDLVPEITL QALNENLTLTLPGDWLAHHPLGKELIDQESQWQSYVHWPLDVR" misc_feature complement(4121846..4123321) /gene="gppA" /locus_tag="STM3913" /note="guanosine-5'-triphosphate,3'-diphosphate diphosphatase; Region: PRK11031" /db_xref="CDD:236826" regulatory complement(4123329..4123334) /regulatory_class="ribosome_binding_site" /gene="gppA" /locus_tag="STM3913" /note="putative RBS for gppA; RegulonDB:STMS1H003861" gene complement(4123440..4124705) /gene="rhlB" /locus_tag="STM3914" /db_xref="GeneID:1255440" CDS complement(4123440..4124705) /gene="rhlB" /locus_tag="STM3914" /note="putative ATP-dependent RNA helicase RHLB. (SW:RHLB_SALTY)" /codon_start=1 /transl_table=11 /product="putative helicase" /protein_id="NP_462805.1" /db_xref="GeneID:1255440" /translation="MSKTHLTEQKFSDFALHPQVVEALEKKGFYNCTPIQALALPLTL AGRDVAGQAQTGTGKTMAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHA DAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQ VVVLDEADRMYDLGFIKDIRWLFRRMPPAAQRLNMLFSATLSYRVRELAFEQMNNAEY VEVEPEQKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHL AADGHRVGLLTGDVAQKKRLRILDEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLP DDCEDYVHRIGRTGRAGASGHSISLACEEYALNLPAIESYIGHSIPVSKYNPEALMND LPKPLRLTRSRPGNGPRRAGAPRNRRRSG" misc_feature complement(4123446..4124702) /gene="rhlB" /locus_tag="STM3914" /note="ATP-dependent RNA helicase RhlB; Provisional; Region: PRK04837" /db_xref="CDD:235314" misc_feature complement(order(4124523..4124546,4124598..4124600, 4124607..4124615,4124619..4124624)) /gene="rhlB" /locus_tag="STM3914" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350669" gene 4124837..4125178 /gene="trxA" /locus_tag="STM3915" /db_xref="GeneID:1255441" regulatory 4124837..4124842 /regulatory_class="ribosome_binding_site" /gene="trxA" /locus_tag="STM3915" /note="putative RBS for trxA; RegulonDB:STMS1H003862" CDS 4124849..4125178 /gene="trxA" /locus_tag="STM3915" /note="redox factor; thioredoxin 1 (TRX1) (TRX). (SW:THIO_ECOLI)" /codon_start=1 /transl_table=11 /product="thioredoxin 1" /protein_id="NP_462806.1" /db_xref="GeneID:1255441" /translation="MSDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILD EIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLFKNGEVAATKVGALSKGQLKE FLDANLA" misc_feature 4124849..4125175 /gene="trxA" /locus_tag="STM3915" /note="thioredoxin TrxA; Region: trxA; PRK09381" /db_xref="CDD:181812" misc_feature order(4124945..4124947,4124954..4124956) /gene="trxA" /locus_tag="STM3915" /note="catalytic residues [active]" /db_xref="CDD:239245" gene 4125414..4125509 /gene="rhoL" /locus_tag="STM3916" /note="pseudogene; no in-frame start" /pseudo /db_xref="GeneID:1255442" gene 4125597..4126856 /gene="rho" /locus_tag="STM3917" /db_xref="GeneID:1255443" CDS 4125597..4126856 /gene="rho" /locus_tag="STM3917" /note="polarity suppressor; transcription termination factor Rho. (SW:RHO_SALTY)" /codon_start=1 /transl_table=11 /product="transcription termination factor Rho" /protein_id="NP_462807.1" /db_xref="GeneID:1255443" /translation="MNLTELKNTPVSELITLGESMGLENLARMRKQDIIFAILKQHAK SGEDIFGDGVLEILQDGFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIR PPKEGERYFALLKVNEVNYDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTAR VLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTE MQRLVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNT VVPASGKVLTGGVDANALHRPKRFFGAARNVEEGGSLTIIATALIDTGSKMDEVIYEE FKGTGNMELHLSRKIAEKRVFPAIDYNRSGTRKEELLTTQEELQKMWILRKIIHPMGE IDAMEFLINKLAMTKTNDDFFEMMKRS" misc_feature 4125597..4126850 /gene="rho" /locus_tag="STM3917" /note="transcription termination factor Rho; Provisional; Region: rho; PRK09376" /db_xref="CDD:236490" gene 4127086..4128189 /gene="rfe" /locus_tag="STM3918" /db_xref="GeneID:1255444" CDS 4127086..4128189 /gene="rfe" /locus_tag="STM3918" /EC_number="2.4.1.-" /note="similar to E. coli UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase; synthesis of enterobacterial common antigen (ECA) (AAC76789.1); Blastp hit to AAC76789.1 (367 aa), 87% identity in aa 1 - 367" /codon_start=1 /transl_table=11 /product="undecaprenyl-phosphate N-acetylglucosaminyltransferase" /protein_id="NP_462808.1" /db_xref="GeneID:1255444" /translation="MKLLTALSELISIFLFTTIFIFLARKVAIKIGLVDKPNFRKRHQ GVIPLVGGISVFAGICFMFGLSDYYIPHLSLYLICAGVLVFVGAMDDRFDISVKIRAV VQAVIAVVMMVIAKLHLGSLGYIFGPWELVLGPFGYFLTLFAVWAAINAFNMVDGIDG LLGGLSSVSFAAMGLILWFDGQTSLAMWCFAMIAAILPYIMLNLGILGRRYKVFMGDA GSTLIGFTVIWLLLETTQGKTHSISPVTALWIIAIPLMDMVAIMYRRLRKGMSPFSPD RQHIHHLVMRAGFTSRQAFVLITLAAAILAGVGVTAEYSHFVPEWVMLVLFLLAFFLY GYCIKRAWKVARFIKRVKRRLRRQRENRPNLTK" misc_feature 4127110..4128132 /gene="rfe" /locus_tag="STM3918" /note="undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase; Region: ECA_wecA; TIGR02380" /db_xref="CDD:131433" gene 4128192..4129247 /gene="wzzE" /locus_tag="STM3919" /db_xref="GeneID:1255445" regulatory 4128192..4128197 /regulatory_class="ribosome_binding_site" /gene="wzzE" /locus_tag="STM3919" /note="putative RBS for wzzE; RegulonDB:STMS1H003863" CDS 4128201..4129247 /gene="wzzE" /locus_tag="STM3919" /note="similar to E. coli putative transport protein (AAC76790.1); Blastp hit to AAC76790.1 (349 aa), 91% identity in aa 2 - 346" /codon_start=1 /transl_table=11 /product="modulator of enterobacterial common antigen (ECA) polysaccharide chain length" /protein_id="NP_462809.1" /db_xref="GeneID:1255445" /translation="MTQPLPGARAVSAENELDIRGLFRTLWAGKFWIIGIGLLFALIA LAYTFFARQEWSATAITDRPTVNMLGGYYSQQQFLRNLDIKTDPASSDKPSVMDEAYK EFIMQLASWDTRRDFWLQTDYYKQRMVGNSKADAAMLDELINNIQFTPGDFTRAINDN VKLIAETAPDANNLLRQYVAFASQRAASHLNDELKGAWAARTVQMKAQVKRQEEVAKA IYSRRVNSIEQALKIAEQHNISRSATDVPADELPDSELFLLGRPMLQARLENLQAVGP AFDLDYFQNRAMLNTLNVGPTLDPRFQTYRYLRTPEEPVKRDSPRRAFLMIMWGIVGA LIGAGVALTRRRTI" misc_feature 4128222..4129244 /gene="wzzE" /locus_tag="STM3919" /note="ECA polysaccharide chain length modulation protein; Region: PRK11638" /db_xref="CDD:236943" gene 4129293..4130433 /gene="wecB" /locus_tag="STM3920" /db_xref="GeneID:1255446" regulatory 4129293..4129298 /regulatory_class="ribosome_binding_site" /gene="wecB" /locus_tag="STM3920" /note="putative RBS for wecB; RegulonDB:STMS1H003864" CDS 4129303..4130433 /gene="wecB" /locus_tag="STM3920" /EC_number="5.1.3.14" /note="similar to E. coli UDP-N-acetyl glucosamine -2-epimerase; synthesis of enterobacterial common antigen (ECA) (AAC76791.1); Blastp hit to AAC76791.1 (389 aa), 85% identity in aa 15 - 389" /codon_start=1 /transl_table=11 /product="UDP-N-acetyl glucosamine-2-epimerase" /protein_id="NP_462810.1" /db_xref="GeneID:1255446" /translation="MKVLTVFGTRPEAIKMAPLVHALEKDPHFEAKVCVTAQHREMLD QVLTLFSIVPDYDLNIMQPGQGLTEITCRILEGLKPILADFKPDVVLVHGDTTTTIAT SLAAFYQRIPVGHVEAGLRTGDLYSPWPEEANRTLTGHLAMYHFAPTENSRQNLLREN IPDERIFVTGNTVIDALIWVRDRVLTSDTLQAELAEQYPFLNANKKMILVTGHRRESF GQGFEHICQALAEIAAANQNVQIVYPVHLNPNVSEPVNRILGHVENVVLIEPQDYLPF VWLMNHAWLILTDSGGIQEEAPSLGKPVLVMRETTERPEAITAGTVRLIGTDSRRIVA EVMRLLHDENEYQTMSRAHNPYGDGQSCARILQALKSYRVSL" misc_feature 4129303..4130421 /gene="wecB" /locus_tag="STM3920" /note="UDP-N-acetylglucosamine 2-epimerase; Region: wecB; TIGR00236" /db_xref="CDD:272978" gene 4130430..4131692 /gene="wecC" /locus_tag="STM3921" /db_xref="GeneID:1255447" CDS 4130430..4131692 /gene="wecC" /locus_tag="STM3921" /EC_number="1.1.1.-" /note="similar to E. coli UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase; synthesis of enterobacterial common antigen (ECA) (AAC76792.1); Blastp hit to AAC76792.1 (420 aa), 90% identity in aa 1 - 420" /codon_start=1 /transl_table=11 /product="UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase" /protein_id="NP_462811.1" /db_xref="GeneID:1255447" /translation="MSFTTISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDIINR GEIHIVEPALGNVVKMAVEGGFLRATTTPVEADAYLIAVPTPFKGDHDPDMAYVEAAA KSIAPVLKKGALVILESTSPVGATEQMAGWLAGMRTDLTFPQQAGEQADVNIAYCPER VLPGQVMVELIKNDRVIGGMTPVCSARASALYKIFLEGECVVTNSRTAEMCKLTENSF RDVNIAFANELSLICAEQGINVWELIRLANRHPRVNILQPGPGVGGHCIAVDPWFIVA QNPQQARLIRTAREVNDGKPHWVVDQVKAAVTDCLAATDKRASEVKIACFGLAFKPNI DDLRESPAMGIAQSIARWHSGETLVVEPNIRQLPKKLDGLCTLAKLDAALAAADVLVM LVDHDEFKAIPGDAVHQRYVVDTKGVWR" misc_feature 4130430..4131674 /gene="wecC" /locus_tag="STM3921" /note="UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional; Region: wecC; PRK11064" /db_xref="CDD:182940" gene 4131676..4132759 /gene="rffG" /locus_tag="STM3922" /db_xref="GeneID:1255448" regulatory 4131676..4131681 /regulatory_class="ribosome_binding_site" /gene="rffG" /locus_tag="STM3922" /note="putative RBS for rffG; RegulonDB:STMS1H003865" CDS 4131692..4132759 /gene="rffG" /locus_tag="STM3922" /EC_number="4.2.1.46" /note="similar to E. coli dTDP-glucose 4,6-dehydratase (AAC76793.1); Blastp hit to AAC76793.1 (355 aa), 88% identity in aa 1 - 354" /codon_start=1 /transl_table=11 /product="dTDP-glucose 4,6-dehydratase" /protein_id="NP_462812.1" /db_xref="GeneID:1255448" /translation="MKRILVTGGAGFIGSAVVRHIIHETADAVVVVDKLTYAGNLMSL ASVAQSDRFAFEKVDICDRASLERVFQQYQPDSVMHLAAESHVDRSIDGPAAFIETNI VGTYTLLEAARAYWSALDADAKAAFRFHHISTDEVYGDLHTADDFFTETTPYAPSSPY SASKASSDHLVRAWLRTYGLPTLVTNCSNNYGPYHFPEKLIPLMILNALAGKPLPVYG NGQQIRDWLYVEDHARALYHVVTNGAVGETYNIGGHNERKNLDVVRTICALLEELAPQ KPQGVVNYHDLITFVDDRPGHDLRYAIDASKIARELGWTPQETFESGMRKTVQWYLAN EAWWKPVQDGSYQGERLGLKR" misc_feature 4131692..4132756 /gene="rffG" /locus_tag="STM3922" /note="dTDP-glucose 4,6-dehydratase; Provisional; Region: PRK10217" /db_xref="CDD:182313" gene 4132780..4133016 /gene="rffH" /locus_tag="STM3923" /db_xref="GeneID:1255449" regulatory 4132780..4132785 /regulatory_class="ribosome_binding_site" /gene="rffH" /locus_tag="STM3923" /note="putative RBS for rffH; RegulonDB:STMS1H003866" CDS 4132792..4133016 /gene="rffH" /locus_tag="STM3923" /note="similar to E. coli glucose-1-phosphate thymidylyltransferase (AAC76794.1); Blastp hit to AAC76794.1 (293 aa), 95% identity in aa 240 - 24" /codon_start=1 /transl_table=11 /product="glucose-1-phosphate thymidyl transferase" /protein_id="NP_462813.1" /db_xref="GeneID:1255449" /translation="MKGIILAGGSGTRLHPITRGVSKRQGFKIACLEEIAWRNGWLDD DGLKRAASQLEKTGYGQYLLELLRARPRQY" misc_feature 4132792..>4132860 /gene="rffH" /locus_tag="STM3923" /note="dTDP-glucose pyrophosphorylase [Cell wall/membrane/envelope biogenesis]; Region: RmlA1; COG1209" /db_xref="CDD:440822" misc_feature <4132852..4132995 /gene="rffH" /locus_tag="STM3923" /note="Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold; Region: Glyco_tranf_GTA_type; cl11394" /db_xref="CDD:472172" gene 4133108..4133671 /gene="wecD" /locus_tag="STM3924" /db_xref="GeneID:1255450" regulatory 4133108..4133113 /regulatory_class="ribosome_binding_site" /gene="wecD" /locus_tag="STM3924" /note="putative RBS for wecD; RegulonDB:STMS1H003867" CDS 4133123..4133671 /gene="wecD" /locus_tag="STM3924" /note="similar to E. coli orf, hypothetical protein (AAC76795.1); Blastp hit to AAC76795.1 (181 aa), 78% identity in aa 1 - 181" /codon_start=1 /transl_table=11 /product="lipopolysaccharide biosynthesis protein" /protein_id="NP_462814.3" /db_xref="GeneID:1255450" /translation="MQVKVPAENIAWLSALQSLGFSLVEGEVDFALPVKGHRDQHGAE IAHLTDIPALRQLAGEAFTQSRFRAPWYAPDASARFYAQWIENAVRGTFDHQCLVLRT ETGAIRGYVSLRELNDTDARIGLLAGRGAGAELMQAAICWAQSRGKATLRVATQLGNT AALKRYIQSGANIESTAYWLYR" misc_feature 4133123..4133668 /gene="wecD" /locus_tag="STM3924" /note="dTDP-4-amino-4,6-dideoxy-D-galactose acyltransferase; Region: PRK10975" /db_xref="CDD:182877" gene 4133665..4134806 /gene="wecE" /locus_tag="STM3925" /db_xref="GeneID:1255451" regulatory 4133665..4133670 /regulatory_class="ribosome_binding_site" /gene="wecD" /locus_tag="STM3924" /note="putative RBS for wecE; RegulonDB:STMS1H003868" CDS 4133676..4134806 /gene="wecE" /locus_tag="STM3925" /note="similar to E. coli putative regulator (AAC76796.1); Blastp hit to AAC76796.1 (376 aa), 92% identity in aa 1 - 376" /codon_start=1 /transl_table=11 /product="TDP-4-oxo-6-deoxy-D-glucose transaminase" /protein_id="NP_462815.1" /db_xref="GeneID:1255451" /translation="MIPFNAPPVVGTELEYMQSAMSSGKLCGDGGFTRRCQQWLEQHF GSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSFTFVSTANAFVLRGAKIVFVDIRP DTMNIDETLIEAAITDKTRAIVPVHYAGVACEMDVIMALADKYNLFVVEDAAQGVMST YKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDRTLIERAEIIREKGTNRSQFFR GQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLSLWQTYYDALTPLARAGR FELPSIPENCGHNAHMFYIKLRDIADRSALINFLKEAEIMAVFHYIPLHDCPAGDKFG EFIGDDVYTTKESERLLRLPLFYNLAPVDQRTVITTLLNYFS" misc_feature 4133676..4134803 /gene="wecE" /locus_tag="STM3925" /note="TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional; Region: PRK11706" /db_xref="CDD:183283" misc_feature order(4133838..4133843,4134129..4134131,4134138..4134140, 4134201..4134203,4134213..4134218,4134633..4134635) /gene="wecE" /locus_tag="STM3925" /note="inhibitor-cofactor binding pocket [active]" /db_xref="CDD:99740" misc_feature order(4133838..4133843,4133913..4133915,4134129..4134131, 4134138..4134140,4134201..4134203,4134216..4134218) /gene="wecE" /locus_tag="STM3925" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99740" misc_feature 4134216..4134218 /gene="wecE" /locus_tag="STM3925" /note="catalytic residue [active]" /db_xref="CDD:99740" gene 4134808..4136058 /gene="wzxE" /locus_tag="STM3926" /db_xref="GeneID:1255452" CDS 4134808..4136058 /gene="wzxE" /locus_tag="STM3926" /note="similar to E. coli putative cytochrome (AAC76797.1); Blastp hit to AAC76797.1 (416 aa), 89% identity in aa 1 - 416" /codon_start=1 /transl_table=11 /product="O-antigen translocase in LPS biosynthesis" /protein_id="NP_462816.1" /db_xref="GeneID:1255452" /translation="MSLAKASLWTAVSTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFR QMITVLGVLAGAGIFNGVTKLVAQHHDNPAQLRTVVGTSSAMVLGFSTLLALVFLLAA APISQGLFGHTDYQGLVRLVALVQMGIAWANLLLALMKGFRDASGNALSLIVGSFLGV AAWYLCYRVGGYEGALLGLALVPALVVVPAGIILIKRGTVPLRYLKPSWDNGLAGQLS KFTLMALITSVTMPVAYVMMRNQLAAHYSWSDVGIWQGVSSISDAYLQFITASFSVYL LPTLSRLTEKQDITREVVKALKFVLPAVAAASFTVWLLRDFAIWLLFSAKFTAMRDLF AWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEISQFILLTAFAHWLIPAHGALGAAQ AYMATYIVYFSLCCGVFLLWRRRA" misc_feature 4134808..4136055 /gene="wzxE" /locus_tag="STM3926" /note="lipid III flippase WzxE; Region: PRK15099" /db_xref="CDD:185054" gene 4136040..4137134 /locus_tag="STM3927" /db_xref="GeneID:1255453" regulatory 4136040..4136045 /regulatory_class="ribosome_binding_site" /locus_tag="STM3927" /note="putative RBS for STM3927; RegulonDB:STMS1H003869" CDS 4136055..4137134 /locus_tag="STM3927" /note="similar to E. coli orf, conceptual translation in SwissProt is fused with b4404 (AAC76799.1); Blastp hit to AAC76799.1 (204 aa), 85% identity in aa 1 - 202" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462817.1" /db_xref="GeneID:1255453" /translation="MTVLIHVLGSDIPHHNHTVLRFFNDTLAATSEHAREFMVAGEDN GFTESCPALSLRFYGSKKALAQAVIAKAKANRRQRFFFHGQFNTSLWLALLSGGIKPA QFYWHIWGADLYEVSHGLKFRLFYPLRRIAQGRVGGVFATRGDLSYFARQHPDVRGEL LYFPTRMDPSLNAMAKERQRAGKLTILVGNSGDRSNQHIAALRAVYQQFGDTVNVVVP MGYPANNQDYIDEVRQAGLALFSAENLQILSEKMEFDAYLALLRQCDLGYFIFARQQG IGTLCLLIQADIPCVLNRDNPFWQDMAEQHLPVLFTTDDLNEQVVREAQRQLASVDKS GITFFSPNYLQPWHNALRIAAGEAE" misc_feature 4136055..4137122 /locus_tag="STM3927" /note="4-alpha-L-fucosyltransferase glycosyl transferase group 56; Region: Glyco_transf_56; pfam07429" /db_xref="CDD:429459" gene 4137118..4138489 /gene="wecF" /locus_tag="STM3928" /db_xref="GeneID:1255454" regulatory 4137118..4137123 /regulatory_class="ribosome_binding_site" /locus_tag="STM3927" /note="putative RBS for wecF; RegulonDB:STMS1H003870" CDS 4137131..4138489 /gene="wecF" /locus_tag="STM3928" /EC_number="2.4.1.-" /note="probable 4-alpha-L-fucosyltransferase. (SW:WECF_SALTY)" /codon_start=1 /transl_table=11 /product="TDP-Fuc4NAc:lipidII transferase" /protein_id="NP_462818.1" /db_xref="GeneID:1255454" /translation="MSLMQFSGLLVVWLLSTLFIATLTWFEFRRVRFNFNVFFSLLFL LTFFFGFPLTSVLVFRFDVGVAPPEILLQALLSAACFYGVYYVTYKTRLRKRVVDVPR KPLFTMNRVETHLTWVILMGIALVSVAIFFMHNGFLLFRLHSYSQIFSSEVSGVALKR FFYFFIPAMLVVYFLRQDSKAWLFFLVSTVAFGLLTYMIVGGTRANIIIAFAIFLFIG IIRGWISLWMLAAAGVLGIVGMFWLALKRYGLNVSGDEAFYTFLYLTRDTFSPWENLA LLLQNYHNIEFQGLAPIVRDFYVFIPTWLWPGRPSIVLNSANYFTWEVLNNHSGLAIS PTLIGSLVVMGGALFIPLGAIVVGLIIKWFDWLYELGNREPNRYKAAILHSFCFGAIF NMIVLAREGLDSFVSRVVFFLVVFGASLLVAKLLFWLFDSAGLIHKRTTSLPQAQVEG KL" misc_feature 4137131..4138480 /gene="wecF" /locus_tag="STM3928" /note="O-antigen assembly polymerase; Region: PRK02975" /db_xref="CDD:179518" gene 4138469..4139226 /gene="wecG" /locus_tag="STM3929" /db_xref="GeneID:1255455" regulatory 4138469..4138474 /regulatory_class="ribosome_binding_site" /gene="wecG" /locus_tag="STM3929" /note="putative RBS for wecG; RegulonDB:STMS1H003871" CDS 4138486..4139226 /gene="wecG" /locus_tag="STM3929" /EC_number="2.4.1.-" /note="probable UDP-N-acetyl-D-mannosaminuronic acid transferase. (SW:WECG_SALTY)" /codon_start=1 /transl_table=11 /product="putative UDP-N-acetyl-D-mannosaminuronic acid transferase" /protein_id="NP_462819.1" /db_xref="GeneID:1255455" /translation="MTNNAAAPLYSLRGLPLIGWRDMSHALNYLFADGQLKQGTLVAI NAEKLLTAEDNPEVRALIAAAEFKYADGISVVRSIRKKFPQAQVSRVAGADLWEALMA RAGKEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFARIHASG AKIVTVAMGSPKQELLMRDCREVHPHALYMGVGGTYDVFTGHVKRAPKIWQNLGLEWL YRLLSQPRRITRQMRLLRYLRWHYTGDL" misc_feature 4138495..4139223 /gene="wecG" /locus_tag="STM3929" /note="putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional; Region: PRK03692" /db_xref="CDD:179631" gene 4139425..4140818 /gene="yifK" /locus_tag="STM3930" /db_xref="GeneID:1255456" regulatory 4139425..4139430 /regulatory_class="ribosome_binding_site" /gene="yifK" /locus_tag="STM3930" /note="putative RBS for yifK; RegulonDB:STMS1H003872" CDS 4139433..4140818 /gene="yifK" /locus_tag="STM3930" /note="permease protein; probable transport protein YIFK. (SW:YIFK_SALTY)" /codon_start=1 /transl_table=11 /product="putative APC family amino-acid transport protein" /protein_id="NP_462820.1" /db_xref="GeneID:1255456" /translation="MAEKKPELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS VLLAYIIAGLFVFFIMRSMGEMLFLEPVTGSFAVYAHRYMSPFFGYLTAWSYWFMWMA VGISEITAIGVYVQFWFPEMAQWIPALIAVGLVALANLAAVRLYGEIEFWFAMIKVTT IIVMIIIGLGVIFFGFGNGGQAIGFGNLTEHGGFFAGGWKGFLTALCIVVASYQGVEL IGITAGEAKNPQVTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFA KIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYALAKNRQLPAAVAKVSRHGVPVA GVALSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRAHKEA IADHPFRSIMFPWANYLTMAFLVCVLIGMYFNEDTRMSLFVGVIFLLAVTLVYKVFGL NRHGTAHKVGE" misc_feature 4139433..4140815 /gene="yifK" /locus_tag="STM3930" /note="putative transport protein YifK; Provisional; Region: PRK10746" /db_xref="CDD:182694" protein_bind 4140829..4140845 /note="putative binding site for FIS, RegulonDB: STMS1H000141" /bound_moiety="FIS" gene 4140921..4140994 /gene="argX" /locus_tag="STM3931" /db_xref="GeneID:1255457" tRNA 4140921..4140994 /gene="argX" /locus_tag="STM3931" /product="tRNA-Arg" /db_xref="GeneID:1255457" gene 4141052..4141124 /gene="hisR" /locus_tag="STM3932" /db_xref="GeneID:1255458" tRNA 4141052..4141124 /gene="hisR" /locus_tag="STM3932" /product="tRNA-His" /db_xref="GeneID:1255458" gene 4141148..4141231 /gene="leuT" /locus_tag="STM3933" /db_xref="GeneID:1255459" tRNA 4141148..4141231 /gene="leuT" /locus_tag="STM3933" /product="tRNA-Leu" /db_xref="GeneID:1255459" gene 4141277..4141350 /gene="proM" /locus_tag="STM3934" /db_xref="GeneID:1255460" tRNA 4141277..4141350 /gene="proM" /locus_tag="STM3934" /product="tRNA-Pro" /db_xref="GeneID:1255460" gene complement(4141935..4143144) /gene="hemY" /locus_tag="STM3935" /db_xref="GeneID:1255461" CDS complement(4141935..4143134) /gene="hemY" /locus_tag="STM3935" /note="similar to E. coli a late step of protoheme IX synthesis (AAC76805.1); Blastp hit to AAC76805.1 (398 aa), 95% identity in aa 1 - 398" /codon_start=1 /transl_table=11 /product="protein for a late step of protoheme IX synthesis" /protein_id="NP_462821.1" /db_xref="GeneID:1255461" /translation="MMLKVLLLFVLLLAGIVVGPMIAGHQGYVLIQTDNYNIETSVTG LAIILIVAMVVLFAIEWLLRRLFRTGAHTRGWFAGRKRRRARKQTEQALLKLAEGDYQ QVEKLMSKNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELAGNDTIPVEITR VRLQLARNENHAARHGVDKLLEVTPRHPEVLRLAEQAYIRTSAWSSLLDIIPSMAKAH VGDEAHRAMLEQQAWIGLMDQARAEQGSEGLRTWWKNQSRKTRHQVALQVAMAEHLIE CDDHDMAQQIIIDGLKRQYDDRLVLPIPRLRTNNPEQLEKVLRQQIKTVGDRPLLWST LGQSLMKHGEWQEATLAFRAALKQRPDAYDYAWLADALDRLHQPEEAAAMRRDGLMLT LQNNPPQ" misc_feature complement(4141938..4143095) /gene="hemY" /locus_tag="STM3935" /note="putative protoheme IX biogenesis protein; Provisional; Region: PRK10747" /db_xref="CDD:182695" misc_feature complement(4142061..4142153) /gene="hemY" /locus_tag="STM3935" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature complement(4141968..4142051) /gene="hemY" /locus_tag="STM3935" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene complement(4143134..4144316) /gene="hemX" /locus_tag="STM3936" /db_xref="GeneID:1255462" CDS complement(4143134..4144303) /gene="hemX" /locus_tag="STM3936" /EC_number="2.1.1.107" /note="similar to E. coli uroporphyrinogen III methylase (AAC76806.1); Blastp hit to AAC76806.1 (393 aa), 87% identity in aa 1 - 393" /codon_start=1 /transl_table=11 /product="uroporphyrinogen III methylase" /protein_id="NP_462822.1" /db_xref="GeneID:1255462" /translation="MTEQEKSSAVVDETRESVETTPQPVNTEKKSKNGAALVLSAVAI AIALAAGIGLYGWGKQQATAQTETSDALATQLTALQKAQESQKAELEGIIKKQAAQLD DANRQQAALAKQLDEVQQKVATISGSDAKTWLLAQADFLVKLAGRKLWSDQDVTTAAA LLKSADASLADMNDPSLITARRAITDDIASLSSVAQIDYDGIILKLNQLSNQIDNLRL ADNDTDGSPMDSDSSELSSSLSEWRVNLQKSWQNFMDSFITIRRRDDTAVPLLAPNQD VYLRENIRSRLLVAAQAVPRHQEETYRQALDNVSTWVRAYYDTDDAATKAFLEEVDKL SQQNITMDLPETLGSQAILEKLMQTRVRNLLAQPTVSTAAPATQTDAPAAAPQGE" misc_feature complement(4143137..4144303) /gene="hemX" /locus_tag="STM3936" /note="putative uroporphyrinogen III C-methyltransferase; Provisional; Region: PRK10920" /db_xref="CDD:236795" regulatory complement(4143139..4143144) /regulatory_class="ribosome_binding_site" /gene="hemX" /locus_tag="STM3936" /note="putative RBS for hemY; RegulonDB:STMS1H003875" regulatory complement(4144311..4144316) /regulatory_class="ribosome_binding_site" /gene="hemX" /locus_tag="STM3936" /note="putative RBS for hemX; RegulonDB:STMS1H003876" gene complement(4144325..4145081) /gene="hemD" /locus_tag="STM3937" /db_xref="GeneID:1255463" CDS complement(4144325..4145065) /gene="hemD" /locus_tag="STM3937" /EC_number="4.2.1.75" /note="similar to E. coli uroporphyrinogen III synthase (AAC76807.1); Blastp hit to AAC76807.1 (246 aa), 82% identity in aa 1 - 246" /codon_start=1 /transl_table=11 /product="uroporphyrinogen III synthase" /protein_id="NP_462823.1" /db_xref="GeneID:1255463" /translation="MSILITRPSPAGEALVSRLRALGQVAWSFPLIEFVAGRELPTLA DRLATLTENDLVFALSQHAVAFAHAQLQRDGRNWPVAPRYFAIGRTTALALHTVSGFD IRYPLDREISEALLQLPELQNIAGKRALILRGNGGRELLGETLTARGAEVSFCECYQR CAKHYDGAEEAMRWHTRGVTTLVVTSGEMLQRLWSLTPQWYREHWLLRCRLLVVSERL AHLARELGWQDIKVADNADNDALLRALQ" misc_feature complement(4144328..4145065) /gene="hemD" /locus_tag="STM3937" /note="uroporphyrinogen-III synthase; Reviewed; Region: hemD; PRK05928" /db_xref="CDD:235647" misc_feature complement(order(4144499..4144513,4144586..4144588, 4144592..4144594,4144664..4144666,4144796..4144798, 4144880..4144888,4145045..4145047)) /gene="hemD" /locus_tag="STM3937" /note="active site" /db_xref="CDD:119440" gene complement(4145062..4146035) /gene="hemC" /locus_tag="STM3938" /db_xref="GeneID:1255464" CDS complement(4145062..4146018) /gene="hemC" /locus_tag="STM3938" /EC_number="2.5.1.61" /note="hydroxymethylbilane synthase; porphobilinogen deaminase. (SW:HEM3_SALTY)" /codon_start=1 /transl_table=11 /product="porphobilinogen deaminase" /protein_id="NP_462824.1" /db_xref="GeneID:1255464" /translation="MTVTSMLDNVLRIATRQSPLALWQAHYVKDALMATHPGLTVELV PMVTRGDVILDTPLAKVGGKGLFVKELEIALLEKRADIAVHSMKDVPVAFPDGLGLVT ICEREDPRDAFVSNKYHSLDDLPAGSIVGTSSLRRQCQLAERRPDLIIRSLRGNVGTR LGKLDNGDYDAIILAVAGLKRLGLESRIRTALPPDVSLPAVGQGAVGIECRLDDARTQ ALLAPLNHSQTALRVTAERAMNTRLEGGCQVPIGSYAEIINGEIWLRALVGAPDGSVM VRGERRGSPEQAEQMGISLAEELLENGARAILTEVYNGETPA" misc_feature complement(4145083..4145994) /gene="hemC" /locus_tag="STM3938" /note="Porphobilinogen deaminase [Coenzyme transport and metabolism]; Region: HemC; COG0181" /db_xref="CDD:439951" regulatory complement(4145076..4145081) /regulatory_class="ribosome_binding_site" /gene="hemD" /locus_tag="STM3937" /note="putative RBS for hemD; RegulonDB:STMS1H003877" regulatory complement(4146030..4146035) /regulatory_class="ribosome_binding_site" /gene="hemC" /locus_tag="STM3938" /note="putative RBS for hemC; RegulonDB:STMS1H003878" gene 4146193..4148926 /gene="cyaA" /locus_tag="STM3939" /db_xref="GeneID:1255465" regulatory 4146193..4146201 /regulatory_class="minus_35_signal" /gene="cyaA" /locus_tag="STM3939" /note="putative -35_signal for cyaA; RegulonDB:STMLTH004631" protein_bind 4146219..4146234 /gene="cyaA" /locus_tag="STM3939" /note="putative binding site for CRP, RegulonDB: STMS1H000108" /bound_moiety="CRP" regulatory 4146220..4146228 /regulatory_class="minus_10_signal" /gene="cyaA" /locus_tag="STM3939" /note="putative -10_signal for cyaA; RegulonDB:STMLTH004631" regulatory 4146367..4146372 /regulatory_class="ribosome_binding_site" /gene="cyaA" /locus_tag="STM3939" /note="putative RBS for cyaA; RegulonDB:STMS1H003879" CDS 4146380..4148926 /gene="cyaA" /locus_tag="STM3939" /EC_number="4.6.1.1" /note="adenylate cyclase. (SW:CYAA_SALTY)" /codon_start=1 /transl_table=11 /product="adenylate cyclase" /protein_id="NP_462825.1" /db_xref="GeneID:1255465" /translation="MYLYIETLKQRLDAINQLRVDRALAAMGPAFQQVYSLLPTLLHY HHPLMPGYLDGNVPSGICFYTPDETQRHYLNELELYRGMTPQDPPKGELPITGVYTMG STSSVGQSCSSDLDIWVCHQSWLDGEERQLLQRKCSLLESWAASLGVEVSFFLIDENR FRHNESGSLGGEDCGSTQHILLLDEFYRTAVRLAGKRILWSMVPCDEEEHYDDYVMTL YAQGVLTPNEWLDLGGLSSLSAEEYFGASLWQLYKSIDSPYKAVLKTLLLEAYSWEYP NPRLLAKDIKQRLHDGEIVSFGLDPYCMMLERVTEYLTAIEDPTRLDLVRRCFYLKVC EKLSRERACVGWRREVLSQLVSEWGWDDARLTMLDNRANWKIDQVREAHNELLDAMMQ SYRNLIRFARRNNLSVSASPQDIGVLTRKLYAAFEALPGKVTLVNPQISPDLSEPNLT FIHVPPGRANRSGWYLYNRAPNMDSIISHQPLEYNRYLNKLVAWAWFNGLLTSRTHLF IKGNGIVDLPKLQEMVADVSHHFPLRLPAPTPKALYSPCEIRHLAIIVNLEYDPTAAF RNKVVHFDFRKLDVFSFGEEQNCLIGSIDLLYRNSWNEVRTLHFNGEQAMIEALKTIL GKMHQDAAPPDSVEVFCYSQHLRGLIRTRVQQLVSECIELRLSSTRQETGRFKALRVS GQTWGLFFERLNVSVQKLENAIEFYGAISHNKLHGLSVQVETNQVKLPSVVDGFASEG IIQFFFEETGDEKGFNIYILDESNRAEVYHHCEGSKEELVRDVSRFYSSSHDRFTYGS SFINFNLPQFYQIVKTDGRAQVIPFRTQPINTVPPANQDHDAPLLQQYFS" misc_feature 4146380..4148878 /gene="cyaA" /locus_tag="STM3939" /note="Adenylate cyclase, class I [Signal transduction mechanisms]; Region: CyaA; COG3072" /db_xref="CDD:442306" gene 4149026..4149387 /locus_tag="STM3940" /db_xref="GeneID:1255466" regulatory 4149026..4149031 /regulatory_class="ribosome_binding_site" /locus_tag="STM3940" /note="putative RBS for STM3940; RegulonDB:STMS1H003880" CDS 4149034..4149387 /locus_tag="STM3940" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462826.1" /db_xref="GeneID:1255466" /translation="MADAFILLGIVMAMVSLGFILINKLFCFISAGCLLSLCASMASF QLWDASYWGRWGKVCPGLDVIISCDNYHFLYDLGWELYGIAFLFFTALMLTCAAIILI NMIMALERYCAGWRR" gene 4149569..4150115 /locus_tag="STM3941" /db_xref="GeneID:1255467" regulatory 4149569..4149574 /regulatory_class="ribosome_binding_site" /locus_tag="STM3941" /note="putative RBS for STM3941; RegulonDB:STMS1H003881" CDS 4149573..4150115 /locus_tag="STM3941" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462827.1" /db_xref="GeneID:1255467" /translation="MDVFIKGYYMSINNPILICVNKKRQIKLALFYSVVAIALMMSLF LNYSIMLKMVCVFLILLMIAGASAYWYSAFSGKPQLTLNQEGVTLHTTRLPIVYWHEI DYVGERVSDNTPVLAIFVKDVELYCQRITNEKMRNNFLSLLNKHESNRVMNISLNDLD YDSDELQDIFKMAVARNLEQ" misc_feature 4149633..4150088 /locus_tag="STM3941" /note="STM3941 family protein; Region: STM3941_fam; NF041635" /db_xref="CDD:469518" gene 4150123..4150489 /locus_tag="STM3942" /db_xref="GeneID:1255468" regulatory 4150123..4150128 /regulatory_class="ribosome_binding_site" /locus_tag="STM3942" /note="putative RBS for STM3942; RegulonDB:STMS1H003882" CDS 4150127..4150489 /locus_tag="STM3942" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462828.1" /db_xref="GeneID:1255468" /translation="MFFVITHHIDVLPLATLPTHETCPYCNNQDVWLIIRQKRTRTCG LSQARKRDKFGLAICNHCSNEIKEKRWSPALRQLFTEQKPLFNLTFWQRYGFWVGWLS VWPALFLATWLYFTFRGW" gene complement(4150560..4150893) /gene="cyaY" /locus_tag="STM3943" /db_xref="GeneID:1255469" CDS complement(4150560..4150880) /gene="cyaY" /locus_tag="STM3943" /note="CYAY protein. (SW:CYAY_SALTY)" /codon_start=1 /transl_table=11 /product="putative frataxin family transport protein" /protein_id="NP_462829.1" /db_xref="GeneID:1255469" /translation="MNDSEFHRLADALWLTIEERLDSWDGDSDIDCEINGGVLTLSFE NGSKIIINRQEPLHQVWLATKQGGYHFDLKGDEWVCDRSGETFWDLLEQAATQQAGEK VSFR" misc_feature complement(4150563..4150880) /gene="cyaY" /locus_tag="STM3943" /note="frataxin-like protein; Provisional; Region: cyaY; PRK00446" /db_xref="CDD:234765" misc_feature complement(order(4150788..4150790,4150794..4150796, 4150812..4150817,4150824..4150826,4150836..4150838, 4150845..4150850,4150872..4150874)) /gene="cyaY" /locus_tag="STM3943" /note="putative iron binding site [ion binding]; other site" /db_xref="CDD:238280" regulatory complement(4150888..4150893) /regulatory_class="ribosome_binding_site" /gene="cyaY" /locus_tag="STM3943" /note="putative RBS for cyaY; RegulonDB:STMS1H003883" gene complement(4150950..4151345) /locus_tag="STM3944" /db_xref="GeneID:1255470" CDS complement(4150950..4151339) /locus_tag="STM3944" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462830.1" /db_xref="GeneID:1255470" /translation="MPKMTPLNRFAHLIKHLKNALRGVGIGSCIYVIIESIMHGTING VEAAGVLTISAVLGLLSALLDIKAKPRAPLILLHFLLCGGCVALMVAMLSALNHFPVN ASVILITGALFIVIYLPLSFILYRSQR" gene complement(4151327..4151849) /locus_tag="STM3945" /note="pseudogene; 2 frameshifts" /pseudo /db_xref="GeneID:1255471" regulatory complement(4151340..4151345) /regulatory_class="ribosome_binding_site" /locus_tag="STM3944" /note="putative RBS for STM3944; RegulonDB:STMS1H003884" gene 4152029..4152238 /gene="yifL" /locus_tag="STM3946" /db_xref="GeneID:1255472" regulatory 4152029..4152034 /regulatory_class="ribosome_binding_site" /gene="yifL" /locus_tag="STM3946" /note="putative RBS for yifL; RegulonDB:STMS1H003886" CDS 4152035..4152238 /gene="yifL" /locus_tag="STM3946" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_462831.1" /db_xref="GeneID:1255472" /translation="MKNVFKTLAVLLTLFSLTGCGLKGPLYFPPADKNAPPPTKKVDS QTQSTMPDKNDRATGDGPSQVNY" misc_feature 4152035..4152160 /gene="yifL" /locus_tag="STM3946" /note="Small periplasmic lipoprotein YifL (function unknown) [Function unknown]; Region: YifL; COG5567" /db_xref="CDD:444309" gene 4152263..4153099 /gene="dapF" /locus_tag="STM3947" /db_xref="GeneID:1255473" regulatory 4152263..4152268 /regulatory_class="ribosome_binding_site" /gene="dapF" /locus_tag="STM3947" /note="putative RBS for dapF; RegulonDB:STMS1H003887" CDS 4152272..4153099 /gene="dapF" /locus_tag="STM3947" /EC_number="5.1.1.7" /note="similar to E. coli diaminopimelate epimerase (AAC76812.1); Blastp hit to AAC76812.1 (275 aa), 95% identity in aa 1 - 275" /codon_start=1 /transl_table=11 /product="diaminopimelate epimerase" /protein_id="NP_462832.3" /db_xref="GeneID:1255473" /translation="MMQFSKMHGLGNDFMVVDAVTQNVFFSPELIRRLSDRHLGVGFD QLLVVEPPYDPELDFHYRIFNADGSEVSQCGNGARCFARFVRLKGLTNKRDIRVSTAN GRMVLSVTEDELVRVNMGEPNFEPAQVPFRANKAEKTYIMRAAEQTILCGVVSMGNPH CVIQVDNVDTAAVETLGPVLESHERFPERANIGFMQVVRREHIRLRVYERGAGETRAC GSGACAAVAVGIQQGLLAEEVRVELPGGRLDIAWKGPGHPLYMTGPAAHIYDGFIHL" misc_feature 4152272..4153096 /gene="dapF" /locus_tag="STM3947" /note="Diaminopimelate epimerase [Amino acid transport and metabolism]; Region: DapF; COG0253" /db_xref="CDD:440023" gene 4153080..4153803 /gene="yigA" /locus_tag="STM3948" /db_xref="GeneID:1255474" regulatory 4153080..4153085 /regulatory_class="ribosome_binding_site" /gene="yigA" /locus_tag="STM3948" /note="putative RBS for yigA; RegulonDB:STMS1H003888" CDS 4153096..4153803 /gene="yigA" /locus_tag="STM3948" /note="hypothetical protein in dapF-xerC intergenic region. (SW:YIGA_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462833.1" /db_xref="GeneID:1255474" /translation="MKQPEEELQETLTELDDRAVVDYLRHHPEFFIRNAHAVEAMRVP HPVRGTVSLVEWHMARARNHINVLEENMTLLMEQAHANESLFYRLLHLQSRLVAADSL DEMLVRFHRWARDLGLAGATLRLFPDRWRLGAPSRYTHLALNRQAFEPLRIQRLGQSQ HYLGPLNGPELLVVLPEAKAVGSVAMSMMGSDGGLGVILFSSRDPHHYQPGQGTQLLQ EIALMLPELLERWIKRV" misc_feature 4153141..4153800 /gene="yigA" /locus_tag="STM3948" /note="hypothetical protein; Provisional; Region: PRK10963" /db_xref="CDD:236808" gene 4153785..4154702 /gene="xerC" /locus_tag="STM3949" /db_xref="GeneID:1255475" regulatory 4153785..4153790 /regulatory_class="ribosome_binding_site" /gene="yigA" /locus_tag="STM3948" /note="putative RBS for xerC; RegulonDB:STMS1H003889" CDS 4153800..4154702 /gene="xerC" /locus_tag="STM3949" /note="integrase/recombinase XERC. (SW:XERC_SALTY)" /codon_start=1 /transl_table=11 /product="putative site-specific integrase/recombinase" /protein_id="NP_462834.1" /db_xref="GeneID:1255475" /translation="MTDVALSQDVSRFLRYLGVERQLSPITLLNYQRQLDAIIALAGE TGLKSWQQCDAAIVRSFAVRSRRKGLGPASLALRLSALRSFFDWLVSQGELKANPAKG VSAPKAPRHLPKNIDVDDVNRLLDIDLNDPLAVRDRAMLEVMYGAGLRLSELVGLDIK HLDLDTGEVWVMGKGSKERRLPIGRNAVTWIEHWLDLRGLFASDEEALFLSKLGKRIS ARNVQKRFAEWGIKQGLNSHVHPHKLRHSFATHMLESSGDLRGVQELLGHANLSTTQI YTHLDFQHLASVYDAAHPRAKRGK" misc_feature 4153800..4154687 /gene="xerC" /locus_tag="STM3949" /note="site-specific tyrosine recombinase XerC; Reviewed; Region: xerC; PRK00236" /db_xref="CDD:234698" misc_feature order(4154247..4154249,4154523..4154525,4154532..4154537, 4154628..4154630) /gene="xerC" /locus_tag="STM3949" /note="active site" /db_xref="CDD:271179" gene 4154690..4155418 /gene="yigB" /locus_tag="STM3950" /db_xref="GeneID:1255476" regulatory 4154690..4154695 /regulatory_class="ribosome_binding_site" /gene="yigB" /locus_tag="STM3950" /note="putative RBS for yigB; RegulonDB:STMS1H003890" CDS 4154702..4155418 /gene="yigB" /locus_tag="STM3950" /note="similar to E. coli putative phosphatase (AAC76815.1); Blastp hit to AAC76815.1 (238 aa), 87% identity in aa 1 - 238" /codon_start=1 /transl_table=11 /product="putative hydrolase of the HAD superfamily" /protein_id="NP_462835.1" /db_xref="GeneID:1255476" /translation="MRFYRPLGRIAALTFDLDDTLYDNRPVILRTEQEALAFMQNYHP SLRSFQNVDLQRIRQAVREAEPEIYHDVTRWRHRAIEQAMRDAGLSAQEAIAGANAAM MHFAKWRSQIEVPQATHETLQQLAKKWPLVAITNGNAQPELFGLGDYFKFVLRAGPDG RSKPFSDMYFLAAEKLHVPIGEILHVGDDLTTDVAGAIRCGMQACWIKPENADLMRTQ DSRLLPHIEISRLASLTSLI" misc_feature 4154702..4155415 /gene="yigB" /locus_tag="STM3950" /note="5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB; Region: PRK10748" /db_xref="CDD:182696" protein_bind 4155429..4155451 /note="putative binding site for LexA, RegulonDB: STMS1H000247" /bound_moiety="LexA" gene 4155438..4157716 /gene="uvrD" /locus_tag="STM3951" /db_xref="GeneID:1255477" regulatory 4155438..4155446 /regulatory_class="minus_35_signal" /gene="uvrD" /locus_tag="STM3951" /note="putative -35_signal for uvrD; RegulonDB:STMLTH004633" regulatory 4155464..4155472 /regulatory_class="minus_10_signal" /gene="uvrD" /locus_tag="STM3951" /note="putative -10_signal for uvrD; RegulonDB:STMLTH004633" regulatory 4155545..4155550 /regulatory_class="ribosome_binding_site" /gene="uvrD" /locus_tag="STM3951" /note="putative RBS for uvrD; RegulonDB:STMS1H003891" CDS 4155554..4157716 /gene="uvrD" /locus_tag="STM3951" /EC_number="3.6.1.-" /note="DNA helicase II. (SW:UVRD_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-dependent ATPase I and helicase II" /protein_id="NP_462836.1" /db_xref="GeneID:1255477" /translation="MDVSYLLDSLNDKQREAVAAPRSNMLVLAGAGSGKTRVLVHRIA WLLSVENNSPYSIMAVTFTNKAAAEMRHRIGQLMGTSQGGMWVGTFHGLAHRLLRAHH MDANLPQDFQILDSEDQMRLLKRLIKAMNLDEKQWPPRQAMWYINSQKDEGLRPHHIQ SYGNPVEQTWQKVYQAYQEACDRAGLVDFAELLLRAHELWLNKPHILQHYRERFTNIL VDEFQDTNNIQYAWVRLLAGDTGKVMIVGDDDQSIYGWRGAQVENIQRFLNDFPGAQT IRLEQNYRSTSNILSAANALIENNNGRLGKKLWTDGVDGEPISLYCAFNELDEARFVV NRIKTWQDNGGALAQCAILYRSNAQSRVLEEALLQASMPYRIYGGMRFFERQEIKDAL SYLRLIANRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLWQVCRELLQEKAL AGRAASALQRFMELIDALAQETADMPLHVQTDRVIKDSGLRTMYEQEKGEKGQTRIEN LEELVTATRQFSYNDEDEDLMPLQAFLSHAALEAGEGQADTWQDAVQLMTLHSAKGLE FPQVFIVGMEEGMFPSQMSLDEGGRLEEERRLAYVGVTRAMQKLTLTYAETRRLYGKE VYHRPSRFIGELPEECVEEVRLRATVSRPVSHQRMGTPLAENDTGYKLGQRVRHAKFG EGTIVNLEGSGEHSRLQVAFQGQGIKWLVAAYAKLETV" misc_feature 4155554..4157713 /gene="uvrD" /locus_tag="STM3951" /note="DNA-dependent helicase II; Provisional; Region: uvrD; PRK11773" /db_xref="CDD:236976" gene 4158073..4159138 /gene="corA" /locus_tag="STM3952" /db_xref="GeneID:1255478" regulatory 4158073..4158081 /regulatory_class="minus_35_signal" /gene="corA" /locus_tag="STM3952" /note="putative -35_signal for corA; RegulonDB:STMLTH004634" regulatory 4158100..4158108 /regulatory_class="minus_10_signal" /gene="corA" /locus_tag="STM3952" /note="putative -10_signal for corA; RegulonDB:STMLTH004634" regulatory 4158182..4158187 /regulatory_class="ribosome_binding_site" /gene="corA" /locus_tag="STM3952" /note="putative RBS for corA; RegulonDB:STMS1H003892" CDS 4158188..4159138 /gene="corA" /locus_tag="STM3952" /note="Mg transport system I; magnesium and cobalt transport protein CORA. (SW:CORA_SALTY)" /codon_start=1 /transl_table=11 /product="MIT family Mg2+/Ni2+/Co2+ transport protein" /protein_id="NP_462837.1" /db_xref="GeneID:1255478" /translation="MLSAFQLEKNRLTRLEVEESQSLIDAVWVDLVEPDDDERLRVQS ELGQSLATRPELEDIEASARFFEDEDGLHIHSFFFFEDAEDHAGNSTVAFTIRDGRLF TLRERELPAFRLYRMRARSQAMVDGNAYELLLDLFETKIEQLADEIENIYSDLEKLSR VIMEGHQGDEYDEALSTLAELEDIGWKVRLCLMDTQRALNFLVRKARLPGGQLEQARE ILRDIESLLPHNESLFQKVNFLMQAAMGFINIEQNRIIKIFSVVSVVFLPPTLVASSY GMNFEFMPELKWSFGYPGAIIFMILAGLAPYLYFKRKNWL" misc_feature 4158188..4159135 /gene="corA" /locus_tag="STM3952" /note="magnesium/cobalt transporter CorA; Region: PRK11085" /db_xref="CDD:182951" misc_feature order(4158275..4158277,4158374..4158376,4158410..4158412, 4158416..4158418,4158458..4158460,4158500..4158511, 4158515..4158520,4158605..4158607,4158614..4158616, 4158773..4158778,4158785..4158787,4158845..4158847) /gene="corA" /locus_tag="STM3952" /note="Cl binding site [ion binding]; other site" /db_xref="CDD:213369" misc_feature order(4158347..4158349,4158356..4158361,4158377..4158379, 4158383..4158385,4158527..4158529,4158539..4158541, 4158578..4158580,4158587..4158589,4158599..4158601, 4158611..4158613,4158620..4158625,4158632..4158634, 4158641..4158646,4158650..4158655,4158662..4158664, 4158710..4158715,4158719..4158724,4158731..4158736, 4158743..4158748,4158752..4158757,4158767..4158769, 4158773..4158778,4158785..4158790,4158797..4158802, 4158827..4158832,4158836..4158841,4158848..4158853, 4158857..4158862,4158869..4158874,4158878..4158883, 4158887..4158895,4158902..4158925,4158929..4158967, 4158971..4158979,4158983..4159000,4159004..4159027, 4159061..4159066,4159073..4159078,4159112..4159114, 4159121..4159123) /gene="corA" /locus_tag="STM3952" /note="oligomer interface [polypeptide binding]; other site" /db_xref="CDD:213369" gene complement(4159187..4159578) /gene="yigF" /locus_tag="STM3953" /db_xref="GeneID:1255479" CDS complement(4159187..4159567) /gene="yigF" /locus_tag="STM3953" /note="hypothetical 14.6 Kda protein in corA-rarD intergenic region. (SW:YIGF_SALTY)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462838.1" /db_xref="GeneID:1255479" /translation="MDKDYINDGSLSEKWKYRFSFYDQHGFPGFWKVSPEYKQAFKAL KPRQRLTIQINFIAFFFSWIYLFVLGLWKKAIIVILLGIVAIFIGALIGVNILGLVVA AYVGVNTNKWFYEKEVKGINTWSL" misc_feature complement(4159217..4159405) /gene="yigF" /locus_tag="STM3953" /note="Protein of unknown function (DUF2628); Region: DUF2628; pfam10947" /db_xref="CDD:431552" regulatory complement(4159573..4159578) /regulatory_class="ribosome_binding_site" /gene="yigF" /locus_tag="STM3953" /note="putative RBS for yigF; RegulonDB:STMS1H003893" gene complement(4159583..4160051) /gene="yigG" /locus_tag="STM3954" /db_xref="GeneID:1255480" CDS complement(4159583..4160041) /gene="yigG" /locus_tag="STM3954" /note="similar to E. coli orf, hypothetical protein (AAC76821.1); Blastp hit to AAC76821.1 (138 aa), 57% identity in aa 7 - 136" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462839.1" /db_xref="GeneID:1255480" /translation="MPPLVRGVAYCHANDVTQHMDVKLMLSVFIPSSERCVSRCRYLL SFALINIIFSILVGVLLYLSFVILAILFTILLHYLVINLNCQRFRDSGFEYIKFYVWG TLVIYIASFVIMVAEDFACDGFGMPLFLIWYFATFSLLLLAPPDSNSLNK" misc_feature complement(4159592..4159969) /gene="yigG" /locus_tag="STM3954" /note="hypothetical protein; Provisional; Region: PRK11371" /db_xref="CDD:183104" regulatory complement(4160046..4160051) /regulatory_class="ribosome_binding_site" /gene="yigG" /locus_tag="STM3954" /note="putative RBS for yigG; RegulonDB:STMS1H003894" gene complement(4160076..4160978) /gene="rarD" /locus_tag="STM3955" /db_xref="GeneID:1255481" CDS complement(4160076..4160960) /gene="rarD" /locus_tag="STM3955" /note="similar to E. coli orf, hypothetical protein (AAC76822.1); Blastp hit to AAC76822.1 (300 aa), 83% identity in aa 8 - 297" /codon_start=1 /transl_table=11 /product="chloramphenicol resistance" /protein_id="NP_462840.1" /db_xref="GeneID:1255481" /translation="MDAKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVI WSFFFMVALLSVSRQWRQVKRLLKTPKKIFLLALSAVLVGGNWLLFIWAVNNHHMLEA SLGYFINPLVNILLGMIFLGERFRRMQWLAVILAVCGVLVQLWTFGSLPIIALGLAFS FAFYGLVRKKIAVEAQTGMLVETLWLLPVAAIYLFGIADSPTSHMGQNALSLNLLLMA AGVVTTIPLLCFTGAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEVPGADKMVTFAFI WVALAIFVMDAIYTQRKK" misc_feature complement(4160079..4160960) /gene="rarD" /locus_tag="STM3955" /note="EamA family transporter RarD; Region: PRK15430" /db_xref="CDD:185328" regulatory complement(4160973..4160978) /regulatory_class="ribosome_binding_site" /gene="rarD" /locus_tag="STM3955" /note="putative RBS for rarD; RegulonDB:STMS1H003895" gene complement(4161004..4161489) /gene="yigI" /locus_tag="STM3956" /db_xref="GeneID:1255482" CDS complement(4161004..4161489) /gene="yigI" /locus_tag="STM3956" /note="possibly involved in aromatic compounds catabolism; hypothetical protein in rarD-pldA intergenic region. (SW:YIGI_SALTY)" /codon_start=1 /transl_table=11 /product="putative PaaI protein" /protein_id="NP_462841.3" /db_xref="GeneID:1255482" /translation="MRCQESMSAVLTAEQALKLVGEMFVYHMPFNRALGLELERYEKA FAQLAFNNQPMMVGNWAQSILHGGVIASALDVAAGLVCVGSTLTRHETISEDELRQRL SRMGTIDLRVDYLRPGRGNRFTATSSLLRAGNKVAVARVELHNEDQLYIASATATYMV G" misc_feature complement(4161007..4161462) /gene="yigI" /locus_tag="STM3956" /note="thioesterase family protein; Region: PRK11688" /db_xref="CDD:183276" misc_feature complement(order(4161139..4161150,4161169..4161171, 4161295..4161297)) /gene="yigI" /locus_tag="STM3956" /note="CoenzymeA binding site [chemical binding]; other site" /db_xref="CDD:239527" misc_feature complement(order(4161148..4161150,4161154..4161168, 4161277..4161279,4161286..4161288,4161292..4161294)) /gene="yigI" /locus_tag="STM3956" /note="subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:239527" misc_feature complement(order(4161169..4161171,4161250..4161255, 4161262..4161267,4161289..4161291)) /gene="yigI" /locus_tag="STM3956" /note="PHB binding site [active]" /db_xref="CDD:239527" gene 4161620..4162505 /gene="pldA" /locus_tag="STM3957" /db_xref="GeneID:1255483" regulatory 4161620..4161625 /regulatory_class="ribosome_binding_site" /gene="pldA" /locus_tag="STM3957" /note="putative RBS for pldA; RegulonDB:STMS1H003896" CDS 4161636..4162505 /gene="pldA" /locus_tag="STM3957" /EC_number="3.1.1.32" /note="phospholipase A1 precursor. (SW:PA1_SALTY)" /codon_start=1 /transl_table=11 /product="outer membrane phospholipase A" /protein_id="NP_462842.1" /db_xref="GeneID:1255483" /translation="MRAILRGLLPATLLPLAAYAQEATIKEVHDAPAVRGSIIANMLQ EHDNPFTLYPYDTNYLIYTNTSDLNKEAISTYNWSENARKDEVKFQLSLAFPLWRGIL GPNSVLGASYTQKSWWQLSNSKESSPFRETNYEPQLFLGFATDYRFAGWTLRDVEMGY NHDSNGRSDPTSRSWNRLYTRLMAENGNWLVEVKPWYVIGSTDDNPDITKYMGYYQLK IGYHLGEAVLSAKGQYNWNTGYGGAEVGLSYPVTKHVRLYTQVYSGYGESLIDYNFNQ TRVGVGVMLNDIF" misc_feature 4161636..4162502 /gene="pldA" /locus_tag="STM3957" /note="phospholipase A; Provisional; Region: PRK10763" /db_xref="CDD:182708" misc_feature order(4161789..4161791,4161906..4161908,4161912..4161914, 4161975..4161977,4162020..4162022) /gene="pldA" /locus_tag="STM3957" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238302" misc_feature order(4161813..4161815,4161906..4161908,4161912..4161914, 4161918..4161920,4161924..4161926,4161969..4161971, 4161987..4161989,4162011..4162013,4162020..4162022, 4162119..4162121,4162125..4162127,4162131..4162133, 4162398..4162400) /gene="pldA" /locus_tag="STM3957" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238302" misc_feature order(4162119..4162121,4162125..4162127,4162161..4162163) /gene="pldA" /locus_tag="STM3957" /note="active site" /db_xref="CDD:238302" misc_feature order(4162140..4162142,4162149..4162151,4162245..4162247) /gene="pldA" /locus_tag="STM3957" /note="calcium binding site [ion binding]; other site" /db_xref="CDD:238302" gene 4162571..4164418 /gene="recQ" /locus_tag="STM3958" /db_xref="GeneID:1255484" CDS 4162571..4164418 /gene="recQ" /locus_tag="STM3958" /EC_number="3.6.1.-" /note="ATP-dependent DNA helicase RECQ. (SW:RECQ_SALTY)" /codon_start=1 /transl_table=11 /product="ATP-dependent DNA helicase" /protein_id="NP_462843.1" /db_xref="GeneID:1255484" /translation="MVNGVNVAQAEVLNLESGAKQVLQETFGYQQFRPGQEAIIDTAL SGRDCLVVMPTGGGKSLCYQIPALLLDGLTVVVSPLISLMKDQVDQLLANGVAAACLN STQSREQQLEVMAGCRTGQIRLLYIAPERLMLDNFLDHLAHWNPVLLAVDEAHCISQW GHDFRPEYAALGQLRQRFPALPFMALTATADDTTRQDIIRLLGLNDPLIQISSFDRPN IRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGL ENAIRVDVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAG RDGLPAEAMLFYDPADMAWLRRCLEEKPAGQLQDIERHKLNAMGAFAEAQTCRRLVLL NYFGEGRQEPCGNCDICLDPPKQYDGLNDAQIALSTIGRVNQRFGMGYVVEVIRGANN QRIRDFGHDKLKVYGMGREKSHEHWVSVIRQLIHLGLVMQNIAQHSALQLTDAARPVL RGDVPLKLAVPRIVALKPRVMQKSFGGNYDRKLFAKLRKLRKAIADEENIPPYVVFND ATLIEMAEQMPVSASEMLSVNGVGMRKLERFGKEFMALIRAHVDGDDEE" misc_feature 4162589..4164409 /gene="recQ" /locus_tag="STM3958" /note="ATP-dependent DNA helicase RecQ; Provisional; Region: PRK11057" /db_xref="CDD:182933" gene 4164482..4165102 /gene="rhtC" /locus_tag="STM3959" /db_xref="GeneID:1255485" CDS 4164482..4165102 /gene="rhtC" /locus_tag="STM3959" /note="similar to E. coli orf, hypothetical protein (AAC76826.1); Blastp hit to AAC76826.1 (122 aa), 87% identity in aa 1 - 122" /codon_start=1 /transl_table=11 /product="RhtB family threonine efflux protein" /protein_id="NP_462844.1" /db_xref="GeneID:1255485" /translation="MMMLFFTVAMVHIVALMSPGPDFFFVSQTAVSRSRKEAMMGVLG ITCGVMVWAGVALLGLHLIIEKMAWLHTIIMVGGGLYLCWMGYQMLRGALKKQDAAAS SPHIELAQSGRSFLKGLLTNLSNPKAIIYFGSVFSLFVGDNVGAAARWGIFALITLET LAWFTVVASLFALPKMRRGYQRLAKWIDGFAGALFAGFGIHLIISR" misc_feature 4164482..4165099 /gene="rhtC" /locus_tag="STM3959" /note="threonine efflux system; Provisional; Region: PRK10229" /db_xref="CDD:236665" gene complement(4165142..4165775) /gene="rthB" /locus_tag="STM3960" /db_xref="GeneID:1255486" CDS complement(4165142..4165762) /gene="rthB" /locus_tag="STM3960" /note="similar to E. coli orf, hypothetical protein (AAC76827.1); Blastp hit to AAC76827.1 (138 aa), 86% identity in aa 1 - 138" /codon_start=1 /transl_table=11 /product="homoserine/homoserine lactone efflux protein" /protein_id="NP_462845.1" /db_xref="GeneID:1255486" /translation="MTFEWWFAYLLTSTLLSLSPGSGAINTMTTSINHGYRGAVASIA GLQTGLGIHIVLVGVGLGTLFSRSLLAFEILKWAGAAYLIWLGIQQWRAAGAIDLHTL AQTQSRGRLFKRAIFVNLTNPKSIVFLAALFPQFIMPQQPQLAQYLILGVTTIVVDMV VMTGYATLAQRIAAWIKGPKQMKALNKAFGSLFMLVGALLASARHA" misc_feature complement(4165148..4165762) /gene="rthB" /locus_tag="STM3960" /note="homoserine/homoserine lactone efflux protein; Provisional; Region: rhtB; PRK10520" /db_xref="CDD:182514" regulatory complement(4165770..4165775) /regulatory_class="ribosome_binding_site" /gene="rthB" /locus_tag="STM3960" /note="putative RBS for rthB; RegulonDB:STMS1H003897" gene 4165858..4166889 /gene="pldB" /locus_tag="STM3961" /db_xref="GeneID:1255487" regulatory 4165858..4165863 /regulatory_class="ribosome_binding_site" /gene="pldB" /locus_tag="STM3961" /note="putative RBS for pldB; RegulonDB:STMS1H003898" CDS 4165873..4166889 /gene="pldB" /locus_tag="STM3961" /EC_number="3.1.1.5" /note="similar to E. coli lysophospholipase L(2) (AAC76828.1); Blastp hit to AAC76828.1 (340 aa), 81% identity in aa 1 - 336" /codon_start=1 /transl_table=11 /product="lysophospholipase L(2)" /protein_id="NP_462846.1" /db_xref="GeneID:1255487" /translation="MFQQQNDWETRENAFAAFAMGPLTDFWRQREEAEFIGVGNIPVR FVRFRNDSNDRTIVICPGRIESYVKYAELAYDLFHLGFDIFIIDHRGQGRSGRMLSDP HRGHVDHFNDYVEDLAAFWQQEIEPGPWRKRYILAHSMGGAIATLFLQRHRVRCDAIA LTAPMFGIVIRLPSFMVRHILDWAEGHQRIREDYAIGTGQWRALPFGMNALTHSRQRY QRNLRFYADEPQLRVGGPTWHWVREGILAGEQVLAGASDDTTPTLLIQAEEERVVDNR THDRFCEIRAAAGYPCEGGKPLVIKGAYHEILFEKDAMRSVALNAIVEFFNKPNLSSG NRFA" misc_feature 4165873..4166862 /gene="pldB" /locus_tag="STM3961" /note="lysophospholipase L2; Provisional; Region: PRK10749" /db_xref="CDD:182697" gene 4166889..4167705 /gene="yigL" /locus_tag="STM3962" /db_xref="GeneID:1255488" regulatory 4166889..4166894 /regulatory_class="ribosome_binding_site" /gene="yigL" /locus_tag="STM3962" /note="putative RBS for yigL; RegulonDB:STMS1H003899" CDS 4166905..4167705 /gene="yigL" /locus_tag="STM3962" /note="similar to E. coli orf, hypothetical protein (AAC76829.1); Blastp hit to AAC76829.1 (171 aa), 85% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="putative hydrolase of the HAD superfamily" /protein_id="NP_462847.1" /db_xref="GeneID:1255488" /translation="MYQVVASDLDGTLLSPDHTLSPYAKETLKLLTARGIHFVFATGR HHVDVGQIRDNLEIKSYMITSNGARVHDTDGNLVFTHNLDSDIASDLFGVVNANPDIV TNVYRDDEWFMNRHRPDEMRFFKEAVFNYSLFEPALLEPEGVSKVFFTSDTHEKLLPL EQAINARWGDRVNVSFSTLTCLEVMAGGVSKGHALEAVAQAMGYSLKECIAFGDGMND AEMLTMAGKGCIMGNAHQRLKDLYPELEVIGINADNAVPHYLRDLFLR" misc_feature 4166905..4167702 /gene="yigL" /locus_tag="STM3962" /note="putative hydrolase; Provisional; Region: PRK10976" /db_xref="CDD:182878" gene 4167786..4168685 /gene="yigM" /locus_tag="STM3963" /db_xref="GeneID:1255489" CDS 4167786..4168685 /gene="yigM" /locus_tag="STM3963" /note="similar to E. coli orf, hypothetical protein (AAC76830.1); Blastp hit to AAC76830.1 (299 aa), 91% identity in aa 1 - 299" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_462848.1" /db_xref="GeneID:1255489" /translation="MALLIITTILWAFSFSLFGEYLAGHVDSYFAVLIRVGLAALVFL PFLRTRGHNLKTISLYMLVGAMQLGIMYMLSFHAYLYLTVSELLLFTVLTPLYITLIY DVMSQRRLRWGYAFSALLAVIGAGIIRYDRVTDHFWVGLLLVQLSNISFAIGMVGYKR LMETRPMPQHNAFAWFYLGAFLVAAVAWSLLGNAQKLPETTLQWSILVFLGVVASGIG YFMWNYGATQVDAGTLGIMNNMHVPAGLLVNLAIWHQQPHWPSFITGAAVILASLWVH RKWVAPRSAQTADDRRRDPASSE" misc_feature 4167816..4168604 /gene="yigM" /locus_tag="STM3963" /note="Carboxylate/Amino Acid/Amine Transporter; Region: 2A78; TIGR00950" /db_xref="CDD:273359" gene complement(4168573..4169536) /gene="metR" /locus_tag="STM3964" /db_xref="GeneID:1255490" CDS complement(4168573..4169526) /gene="metR" /locus_tag="STM3964" /note="LysR family; transcriptional activator protein metR. (SW:METR_SALTY)" /codon_start=1 /transl_table=11 /product="regulator for metE and metH" /protein_id="NP_462849.1" /db_xref="GeneID:1255490" /translation="MIEIKHLKTLQALRNSGSLAAAAAVLHQTQSALSHQFSDLEQRL GFRLFVRKSQPLRFTPQGEVLLQLANQVLPQISRALQACNEPQQTRLRIAIECHSCIQ WLTPALENFRASWPQVEMDFTSGVTFDPQPALQQGELDLVMTSDILPRSGLHYSPMFD FEVRLVLAPDHPLASKTQITPEDLASETLLIYPVQRSRLDVWRHFLQPAGISPLLKSV DNTLLLIQMVAARMGIAALPHWVVESVERQGLVVTKTLGDGLWSRLYAAVRDGDQRQA VTEAFIRSTRDHACDHLPFVRSAERPIFDAPTAKPGSQPRL" misc_feature complement(4168576..4169526) /gene="metR" /locus_tag="STM3964" /note="HTH-type transcriptional regulator MetR; Region: PRK15421" /db_xref="CDD:185319" regulatory complement(4169531..4169536) /regulatory_class="ribosome_binding_site" /gene="metR" /locus_tag="STM3964" /note="putative RBS for metR; RegulonDB:STMS1H003900" gene 4169764..4172039 /gene="metE" /locus_tag="STM3965" /db_xref="GeneID:1255491" regulatory 4169764..4169769 /regulatory_class="ribosome_binding_site" /gene="metE" /locus_tag="STM3965" /note="putative RBS for metE; RegulonDB:STMS1H003901" CDS 4169775..4172039 /gene="metE" /locus_tag="STM3965" /EC_number="2.1.1.14" /note="5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase. (SW:METE_SALTY)" /codon_start=1 /transl_table=11 /product="5-methyltetrahydropteroyltriglutamate- homocysteine S-methyltransferase" /protein_id="NP_462850.1" /db_xref="GeneID:1255491" /translation="MTILTHTLGFPRVGLRRELKKAQESYWAGNTTREALLAVGRELR ARHWEQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNNDGSVDIDTLFRIGRG RAPTGEPAAAAEMTKWFNTNYHYIVPEFSKGQQFRLTWTQLLEEVDEALALGHKIKPV LLGPVTYLWLGKVKGEPFDRLTLLKDILPVYQHVLAELAKRGIEWVQIDEPALVLELP QAWLDAFKPAYDALAGQVKLLLTTYFEGVTPNLDTIIALPVQGLHVDLIHGKDDVAEL HQRLPVDWLLSAGLINGRNVWRADLTEKYAQINAIVGKRALWVASSCSLLHSPIDLSV ETRLDTEVKSWFAFALQKCGELALLRDALNSGETAALEEWSAPIQARRHSRRVHNAAV EKRLAAITAQDSQRENPYEVRAEAQRARFKLPAWPTTTIGSFPQTTEIRGLRLDFKKG NLDANHYRTGIAEHIKQAIIEQERLGLDVLVHGEAERNDMVEYFGEHLDGFVFTQNGW VQSYGSRCVKPPVVIGDISRPAPITVEWAKYAQSLTDKPVKGMLTGPVTILCWSFPRE DVTRETIAKQIALALRDEVADLEAAGIGIIQIDEPALREGLPLRRSDWDAYLEWGVEA FRINAAVAKDETQIHTHMCYCEFNDIMDSIAALDADVITIETSRSDMELLESFEAFDY PNEIGPGVYDIHSPNVPSVEWIEALLKKAAQRIPAQRLWVNPDCGLKTRGWPETRAAL ANMVKAAHNLRQAK" misc_feature 4169778..4172030 /gene="metE" /locus_tag="STM3965" /note="5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional; Region: PRK05222" /db_xref="CDD:235367" gene 4172367..4173726 /locus_tag="STM3966" /db_xref="GeneID:1255492" regulatory 4172367..4172372 /regulatory_class="ribosome_binding_site" /locus_tag="STM3966" /note="putative RBS for STM3966; RegulonDB:STMS1H003902" CDS 4172383..4173726 /locus_tag="STM3966" /note="similar to E. coli putative arylsulfatase regulator (AAC76803.1); Blastp hit to AAC76803.1 (411 aa), 47% identity in aa 11 - 402" /codon_start=1 /transl_table=11 /product="putative arylsulfatase regulator" /protein_id="NP_462851.1" /db_xref="GeneID:1255492" /translation="MSHGAGEPYFLTEMSDMAVAGCHVMAKPGGAICNIDCTYCFYLE KEALYPERNKNWRMSDETLEQFIRQHIAAQSGDRIDFAWQGGEPTMMGLPFFRRVVAL CEKYGDGRKITHALQTNGILVNDEWARFFAEQHFLIGLSIDGPASLHNHYRFNRAGKG THEQVVAAMARLKAHHVDFNTLTVVGKHNVGHAADVYEFLLAAGSRFIQFIPLVERMS TDNSSVLNLVMPGESAATLAPWTVPSWQYGEFLNQIFDIWVRRDVDRVYVQMFDVALA AWTAQQPVLCVHSETCGHAFALESNGDLYNCDHFVYPEHLLGNIHQHSIKALNNSERA IAFGEAKRETLTADCRRCDYRFVCHGGCPKHRFAVSPSGHPAHNYLCAGYKHFFQHVT PYMNVWRELLAQGYPMASIMRWLAQDARKDTGAVSRNHPCPCGSGKKYKKCCGKA" misc_feature 4172449..4173585 /locus_tag="STM3966" /note="anaerobic sulfatase-maturating enzyme; Region: sulfatase_rSAM; TIGR03942" /db_xref="CDD:188457" misc_feature <4173622..>4173690 /locus_tag="STM3966" /note="Uncharacterized conserved protein YecA, UPF0149 family, contains C-terminal Zn-binding SEC-C motif [Function unknown]; Region: YecA; COG3318" /db_xref="CDD:442547" gene complement(4173806..4174630) /gene="dlhH" /locus_tag="STM3967" /db_xref="GeneID:1255493" CDS complement(4173806..4174618) /gene="dlhH" /locus_tag="STM3967" /note="similar to E. coli putative enzyme (AAC76833.1); Blastp hit to AAC76833.1 (332 aa), 91% identity in aa 2 - 181" /codon_start=1 /transl_table=11 /product="putative dienelactone hydrolase family" /protein_id="NP_462852.1" /db_xref="GeneID:1255493" /translation="MTTTHPSGFAPAASPLAPTMIHTPDGAISAGITSIPSQGDDMPA YYARPKASDGALPVVIVVQEIFGVHEHIRDICRRLALEGYLAIAPELYFREGDPNDFA DIPTLLSGLVAKVPDSQVLADLDHVASWASRNGGDAHRLMITGFCWGGRITWLYAAHN PQLKAAVAWYGKLVGDTSLNSPKHPVDIATDLNAPVLGLYGGQDTSIPQESVETMRQA LRAANAKAEIVVYPDAGHAFNADYRPGYHEASAKDGWQRMLEWFAQYGGKKG" misc_feature complement(4173827..4174492) /gene="dlhH" /locus_tag="STM3967" /note="Dienelactone hydrolase family; Region: DLH; pfam01738" /db_xref="CDD:396343" regulatory complement(4174625..4174630) /regulatory_class="ribosome_binding_site" /gene="dlhH" /locus_tag="STM3967" /note="putative RBS for dlhH; RegulonDB:STMS1H003903" protein_bind 4174736..4174751 /note="putative binding site for CRP, RegulonDB: STMS1H000081" /bound_moiety="CRP" protein_bind 4174789..4174803 /note="putative binding site for CRP, RegulonDB: STMS1H000056" /bound_moiety="CRP" gene 4174799..4175638 /gene="udp" /locus_tag="STM3968" /db_xref="GeneID:1255494" regulatory 4174799..4174807 /regulatory_class="minus_35_signal" /gene="udp" /locus_tag="STM3968" /note="putative -35_signal for udp; RegulonDB:STMLTH004635" regulatory 4174823..4174831 /regulatory_class="minus_10_signal" /gene="udp" /locus_tag="STM3968" /note="putative -10_signal for udp; RegulonDB:STMLTH004635" regulatory 4174865..4174870 /regulatory_class="ribosome_binding_site" /gene="udp" /locus_tag="STM3968" /note="putative RBS for udp; RegulonDB:STMS1H003904" CDS 4174877..4175638 /gene="udp" /locus_tag="STM3968" /EC_number="2.4.2.3" /note="uridine phosphorylase. (SW:UDP_SALTY)" /codon_start=1 /transl_table=11 /product="uridine phosphorylase" /protein_id="NP_462853.1" /db_xref="GeneID:1255494" /translation="MSKSDVFHLGLTKNDLQGAQLAIVPGDPERVEKIAALMDKPVKL ASHREFTSWRAELDGKAVIVCSTGIGGPSTSIAVEELAQLGIRTFLRIGTTGAIQPHI NVGDVLVTTASVRLDGASLHFAPMEFPAVADFACTTALVEAAKSIGATTHVGVTASSD TFYPGQERYDTYSGRVVRRFKGSMEEWQAMGVMNYEMESATLLTMCASQGLRAGMVAG VIVNRTQQEIPNAETMKQTESHAVKIVVEAARRLL" misc_feature 4174886..4175635 /gene="udp" /locus_tag="STM3968" /note="uridine phosphorylase; Provisional; Region: PRK11178" /db_xref="CDD:183018" misc_feature order(4174895..4174900,4174952..4174960,4174964..4174966, 4175018..4175026,4175078..4175086,4175090..4175095, 4175099..4175104,4175111..4175116,4175120..4175125, 4175207..4175224,4175228..4175233,4175237..4175245, 4175258..4175269,4175276..4175278,4175285..4175290, 4175339..4175341,4175351..4175365,4175432..4175437, 4175441..4175446,4175465..4175467,4175495..4175503) /gene="udp" /locus_tag="STM3968" /note="homohexamer interface [polypeptide binding]; other site" /db_xref="CDD:350167" misc_feature order(4174949..4174957,4174964..4174966,4175147..4175158, 4175468..4175470) /gene="udp" /locus_tag="STM3968" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:350167" misc_feature order(4174952..4174957,4174964..4174966,4175081..4175083, 4175147..4175164,4175360..4175362,4175459..4175470, 4175534..4175539) /gene="udp" /locus_tag="STM3968" /note="active site" /db_xref="CDD:350167" misc_feature order(4175081..4175083,4175147..4175149,4175156..4175164, 4175360..4175362,4175459..4175470,4175534..4175539) /gene="udp" /locus_tag="STM3968" /note="pyrimidine nucleoside binding site [chemical binding]; other site" /db_xref="CDD:350167" gene 4175765..4177208 /gene="yigN" /locus_tag="STM3969" /db_xref="GeneID:1255495" regulatory 4175765..4175770 /regulatory_class="ribosome_binding_site" /gene="yigN" /locus_tag="STM3969" /note="putative RBS for yigN; RegulonDB:STMS1H003905" CDS 4175778..4177208 /gene="yigN" /locus_tag="STM3969" /note="similar to E. coli putative alpha helix chain (AAC76835.1); Blastp hit to AAC76835.1 (475 aa), 87% identity in aa 1 - 473" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462854.1" /db_xref="GeneID:1255495" /translation="MDITLMISAVVALAAGAVIGWLATKAHADQIRADLIEERRELDI ELSAARQQLAQEAHWRSECELLNNELRSLHSINTSLEADLREVTTRLEATQQHAEDKI RQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLTPLREQLDGFRRQVQES FGKEAQERHTLAHEIRNLQQLNAQMAQEAINLTRALKGDNKAQGNWGEVVLARVLEAS GLREGYEYETQVSIENDARSRMQPDVIVRLPQGKDVVIDAKMTLVAYERYFNAEDDYT REAALQEHIASVRNHIRLLGRKDYQQLPGLRSLDYVLMFIPVEPAFLLALDKQPELIT EALKNNIMLVSPTTLLVALRTIANLWRYEHQSRNAQHIADRASKLYDKMRLFVDDMSA IGQSLDKAQDNYRQAMKKLASGRGNVLAQAEAFRGLGVEIKREINPDLAEQAVTQDEE YRLRSIPEGRQDEHYPNDERVKQQLS" misc_feature 4175778..4177205 /gene="yigN" /locus_tag="STM3969" /note="DNA recombination protein RmuC; Provisional; Region: PRK10361" /db_xref="CDD:182409" gene 4177293..4178059 /gene="ubiE" /locus_tag="STM3970" /db_xref="GeneID:1255496" regulatory 4177293..4177298 /regulatory_class="ribosome_binding_site" /gene="ubiE" /locus_tag="STM3970" /note="putative RBS for ubiE; RegulonDB:STMS1H003906" CDS 4177304..4178059 /gene="ubiE" /locus_tag="STM3970" /EC_number="2.1.1.-" /note="similar to E. coli 2-octaprenyl-6-methoxy-1,4-benzoquinone --> 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinone (AAC76836.1); Blastp hit to AAC76836.1 (251 aa), 95% identity in aa 1 - 251; 2-octaprenyl-6-methoxy-1,4-benzoquinone methylase; S-adenosylmethionine" /codon_start=1 /transl_table=11 /product="2-DMK methyltransferase" /protein_id="NP_462855.1" /db_xref="GeneID:1255496" /translation="MVEDSQETTHFGFQTVAKEQKADMVAHVFHSVASKYDVMNDLMS FGIHRLWKRFTIDCSGVRRGQTVLDLAGGTGDLTAKFSRMVGETGKVILADINDSMLK MGREKLRNIGVIGNVEYVQANAEALPFPDNTFDCITISFGLRNVTEKEKALRSMFRVL KPGGRLLVLEFSKPIIEPLSKAYDAYSFHILPRIGSMVANDADSYRYLAESIRMHPDQ DTLKAMMQDAGFESVDYYNLTAGVVALHRGYKF" misc_feature 4177340..4178056 /gene="ubiE" /locus_tag="STM3970" /note="bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE; Region: ubiE; PRK00216" /db_xref="CDD:234689" misc_feature order(4177511..4177531,4177586..4177591,4177667..4177675, 4177718..4177720) /gene="ubiE" /locus_tag="STM3970" /note="S-adenosylmethionine binding site [chemical binding]; other site" /db_xref="CDD:100107" gene 4178057..4178674 /gene="yigP" /locus_tag="STM3971" /db_xref="GeneID:1255497" regulatory 4178057..4178062 /regulatory_class="ribosome_binding_site" /gene="yigP" /locus_tag="STM3971" /note="putative RBS for yigP; RegulonDB:STMS1H003907" CDS 4178069..4178674 /gene="yigP" /locus_tag="STM3971" /note="similar to E. coli orf, hypothetical protein (AAC76837.1); Blastp hit to AAC76837.1 (201 aa), 86% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462856.1" /db_xref="GeneID:1255497" /translation="MPFKPLVTAGIEGLLNTFLYRSPALKSARTRLQGKVLCVKLKGF SMPLVLVFSERQVDVLGAWEGEADCTVITQASVLPKLRDRQQLATLIRSGELEVQGDI QVVQNFVALADLAEFDPAELLAPYTGDIAAESIGKVVRGGAKFLRHGFQRQQRYAAEA ITEEWRMAPGPLEVAWFAEETAAVERAVDSLTTRLEKLEAK" misc_feature 4178072..4178671 /gene="yigP" /locus_tag="STM3971" /note="Ubiquinone biosynthesis protein UbiJ, contains SCP2 domain [Coenzyme transport and metabolism]; Region: UbiJ; COG3165" /db_xref="CDD:442398" gene 4178660..4180311 /gene="aarF" /locus_tag="STM3972" /db_xref="GeneID:1255498" regulatory 4178660..4178665 /regulatory_class="ribosome_binding_site" /gene="yigP" /locus_tag="STM3971" /note="putative RBS for aarF; RegulonDB:STMS1H003908" CDS 4178671..4180311 /gene="aarF" /locus_tag="STM3972" /note="similar to E. coli orf, hypothetical protein (AAC76838.1); Blastp hit to AAC76838.1 (546 aa), 94% identity in aa 1 - 546" /codon_start=1 /transl_table=11 /product="putative regulator in ubiquinone biosynthesis" /protein_id="NP_462857.1" /db_xref="GeneID:1255498" /translation="MTPGEVRRLYFIIRTFLSYGLDELIPRMRLTLPLRLWRYSLFWM PNRHKDKLLGERLRLALQELGPVWIKFGQMLSTRRDLFPPQIADQLALLQDKVAPFDG RLAKAQIEEAMGGLPVEAWFDDFDIQPLASASIAQVHTARLKSNGKEVVIKVIRPDIL PVIQADLKLIYRLARWVPRLLPDGRRLRPTEVVREYEKTLIDELNLLRESANAIQLRR NFENSPMLYIPEVYSDYCSQNMMVMERIYGIPVSDVAALEKNGTNMKLLAERGVKVFF TQVFRDSFFHADMHPGNIFVSHEHPENPQYIGIDCGIVGSLNKEDKRYLAENFIAFFN RDYRKVAELHVDSGWVPPDTNVEDFEFAIRTVCEPIFEKPLAEISFGHVLLNLFNTAR RFNMEVQPQLVLLQKTLLYVEGVGRQLYPQLDLWKTAKPFLESWIKDQVGIPALTRAL KEKAPFWVEKMPEIPELVYDSLRQGKYLQHSVDKIARELQVNHVRQSQSRYLLGIGAT LLLSGSFLLVNRPEWGLMPGWLMVGGVVVWLVGWRKTR" misc_feature 4178677..4180254 /gene="aarF" /locus_tag="STM3972" /note="putative ubiquinone biosynthesis protein UbiB; Reviewed; Region: ubiB; PRK04750" /db_xref="CDD:235310" misc_feature order(4179097..4179102,4179106..4179114,4179118..4179120, 4179148..4179150,4179154..4179156,4179340..4179342, 4179397..4179408,4179532..4179534,4179544..4179549, 4179553..4179555,4179595..4179600) /gene="aarF" /locus_tag="STM3972" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:270874" gene 4180506..4180771 /gene="tatA" /locus_tag="STM3973" /db_xref="GeneID:1255499" regulatory 4180506..4180511 /regulatory_class="ribosome_binding_site" /gene="tatA" /locus_tag="STM3973" /note="putative RBS for tatA; RegulonDB:STMS1H003909" CDS 4180517..4180771 /gene="tatA" /locus_tag="STM3973" /note="SEC-independent protein translocase protein TATA. (SW:TATA_SALTY)" /codon_start=1 /transl_table=11 /product="component of Sec-independent protein secretion pathway" /protein_id="NP_462858.1" /db_xref="GeneID:1255499" /translation="MGGISIWQLLIVAVIVVLLFGTKKLGSIGSDLGASIKGFKKAMS DDDAKQDKTSQDADFTAKSIADKQGEAKKEDAKSQDKEQV" misc_feature 4180517..4180768 /gene="tatA" /locus_tag="STM3973" /note="Sec-independent protein translocase subunit TatA; Region: tatA; PRK03554" /db_xref="CDD:179592" gene 4180763..4181323 /gene="tatB" /locus_tag="STM3974" /db_xref="GeneID:1255500" regulatory 4180763..4180768 /regulatory_class="ribosome_binding_site" /gene="tatA" /locus_tag="STM3973" /note="putative RBS for tatB; RegulonDB:STMS1H003910" CDS 4180775..4181323 /gene="tatB" /locus_tag="STM3974" /note="SEC-independent protein translocase protein TATB. (SW:TATB_SALTY)" /codon_start=1 /transl_table=11 /product="component of Sec-independent protein secretion pathway" /protein_id="NP_462859.1" /db_xref="GeneID:1255500" /translation="MFDIGFSELLLVFVIGLIVLGPQRLPVAVKTVAGWIRALRSLAT TVQNELTQELKLQEFQDSLKKVEKASLENLTPELKASMDELRQAAESMKRTYSANDPE QASDEAHTIHNPVVKGNETQHEGVTPAAAETQASAPEQKPEPVKANVPESTETASVAT IDAEKKSAAPVVESSPSSSDKP" misc_feature 4180778..4181017 /gene="tatB" /locus_tag="STM3974" /note="twin arginine-targeting protein translocase TatB; Region: tatB; TIGR01410" /db_xref="CDD:130477" gene 4181326..4182105 /gene="tatC" /locus_tag="STM3975" /db_xref="GeneID:1255501" CDS 4181326..4182105 /gene="tatC" /locus_tag="STM3975" /note="integral membrane protein; similar to E. coli orf, hypothetical protein (AAC76842.1); Blastp hit to AAC76842.1 (258 aa), 89% identity in aa 1 - 258" /codon_start=1 /transl_table=11 /product="component of sec-independent protein export" /protein_id="NP_462860.1" /db_xref="GeneID:1255501" /translation="MAVEDTQPLITHLIELRKRLLNCIVAVLLIFLALIYFANDIYHL VAAPLIKQMPQGATMIATDVASPFFTPIKLTFMVSLILSAPVILYQVWAFIAPALYKH ERRLVVPLLVSSSLLFYIGMAFAYFVVFPLAFGFLTHTAPEGVQVSTDIASYLSFVMA LFMAFGVAFEVPVAIVLLCWMGITTPEDLRKKRPYILVGAFIVGMLLTPPDVFSQTLL AIPMYCLFEIGVFCSRFYVGKRRTRDEDNEAETEKAEHTED" misc_feature 4181326..4182099 /gene="tatC" /locus_tag="STM3975" /note="Sec-independent protein translocase subunit TatC; Region: PRK10921" /db_xref="CDD:182840" gene 4182135..4182929 /gene="yigW" /locus_tag="STM3976" /db_xref="GeneID:1255502" regulatory 4182135..4182140 /regulatory_class="ribosome_binding_site" /gene="yigW" /locus_tag="STM3976" /note="putative RBS for yigW; RegulonDB:STMS1H003911" CDS 4182147..4182929 /gene="yigW" /locus_tag="STM3976" /note="similar to E. coli orf, hypothetical protein (AAC76843.1); Blastp hit to AAC76843.1 (206 aa), 80% identity in aa 5 - 184" /codon_start=1 /transl_table=11 /product="putative hydrolase of PHP superfamily" /protein_id="NP_462861.3" /db_xref="GeneID:1255502" /translation="MFDIGVNLTSSQFAKDRDDVVARAFAAGVKGMLLTGTNIHESQQ ALKLARRYPHCWSTAGVHPHDSSQWSPASEDAIIALANQPEVVAIGECGLDFNRNFST PQEQERAFQAQLQIAAELQIPIFMHCRDAHERFLVLLDPWLDSLPGAILHCFTGSRQQ MQACVDRGLYIGITGWVCDERRGLELRELLPFIPAEKLLIETDAPYLLPRDLTPKPTS RRNEPAYLPHILERIALWRGEDPQWLAAMTDANARTLFEVVF" misc_feature 4182147..4182920 /gene="yigW" /locus_tag="STM3976" /note="3'-5' ssDNA/RNA exonuclease TatD; Region: PRK10425" /db_xref="CDD:182449" misc_feature order(4182159..4182161,4182165..4182167,4182525..4182527, 4182600..4182602,4182753..4182755) /gene="yigW" /locus_tag="STM3976" /note="active site" /db_xref="CDD:238635" gene complement(4182937..4183441) /gene="rfaH" /locus_tag="STM3977" /db_xref="GeneID:1255503" CDS complement(4182937..4183425) /gene="rfaH" /locus_tag="STM3977" /note="affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin; similar to E. coli transcriptional activator affecting biosynthesis of lipopolysaccharide core, F pilin, and haemolysin (AAC76845.1); Blastp hit to AAC76845.1 (162 aa), 87% identity in aa 1 - 162" /codon_start=1 /transl_table=11 /product="transcriptional activator" /protein_id="NP_462862.1" /db_xref="GeneID:1255503" /translation="MQSWYLLYCKRGQLQRAQEHLERQAVSCLTPMITLEKMVRGKRT SVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGAHPAIVPSSVIHQLSIYKPE GVVDPETPYPGDSVIITEGAFEGLKAIFTEPDGETRSMLLLNLLNKEVKQSVKNTGFR KI" misc_feature complement(4182940..4183425) /gene="rfaH" /locus_tag="STM3977" /note="transcription/translation regulatory transformer protein RfaH; Region: rfaH; PRK09014" /db_xref="CDD:181611" regulatory complement(4183436..4183441) /regulatory_class="ribosome_binding_site" /gene="rfaH" /locus_tag="STM3977" /note="putative RBS for rfaH; RegulonDB:STMS1H003912" gene 4183602..4185089 /gene="yigC" /locus_tag="STM3978" /db_xref="GeneID:1255504" regulatory 4183602..4183607 /regulatory_class="ribosome_binding_site" /gene="yigC" /locus_tag="STM3978" /note="putative RBS for yigC; RegulonDB:STMS1H003913" CDS 4183611..4185089 /gene="yigC" /locus_tag="STM3978" /note="similar to E. coli putative oxidoreductase (AAC76846.1); Blastp hit to AAC76846.1 (497 aa), 95% identity in aa 1 - 491" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_462863.1" /db_xref="GeneID:1255504" /translation="MDAMKYHDLRDFLTLLEQQGELKRITLPVDPHLEITEIADRTLR AGGPALLFENPKGYAMPVLCNLFGTPKRVAMGMGQDDVSALREVGKLLAFLKEPEPPK GFRDLFDKLPQFKQVLNMPTKRLRGAPCQQKIASGDDVDLTRLPVMTCWPDDAAPLIT WGLTVTRGPHKERQNLGIYRQQLIGKNKLIMRWLSHRGGALDFQEWLAARPGERFPVS VALGADPATILGAVTPVPDTLSEYAFAGLLRGTKTEVVKCLSNDLEVPASAEIILEGY IEPGEMAPEGPYGDHTGYYNEVDSFPVFTVTHITQREDAIYHSTYTGRPPDEPAVLGV ALNEVFVPILQKQFPEIVDFYLPPEGCSYRLAVVTMKKQYAGHAKRVMMGVWSFLRQF MYTKFVIVCDDDVNARDWNDVIWAITTRMDPARDTVLVENTPIDYLDFASPVSGLGSK MGLDATNKWPGETQREWGRPIVKDPEVTARIDAIWDELAIFK" misc_feature 4183611..4185086 /gene="yigC" /locus_tag="STM3978" /note="4-hydroxy-3-polyprenylbenzoate decarboxylase; Region: PRK10922" /db_xref="CDD:236796" gene 4185165..4185876 /gene="ubiB" /locus_tag="STM3979" /db_xref="GeneID:1255505" regulatory 4185165..4185170 /regulatory_class="ribosome_binding_site" /gene="ubiB" /locus_tag="STM3979" /note="putative RBS for ubiB; RegulonDB:STMS1H003914" CDS 4185175..4185876 /gene="ubiB" /locus_tag="STM3979" /EC_number="1.14.13.-" /note="similar to E. coli ferrisiderophore reductase; flavin reductase (NADPH:flavin oxidoreductase) (AAC76847.1); Blastp hit to AAC76847.1 (233 aa), 90% identity in aa 1 - 233" /codon_start=1 /transl_table=11 /product="FMN reductase" /protein_id="NP_462864.1" /db_xref="GeneID:1255505" /translation="MTTLSCKVTSVEAITDTVYRVRLVPDAAFSFRAGQYLMVVMDER DKRPFSMASTPDEKGFIELHIGASELNLYAMAVMDRILKDREIVVDIPHGDAWLRDDE ERPLILIAGGTGFSYVRSILLTALARNPARDVTIYWGGREEKHLYDLSELEALSVNHP NLRIEPVVEQPEEGWRGRTGTVLTAVLQDYGTLAGHDIYIAGRFEMAKIARDLFCHER NAREDRLFGDAFAFI" misc_feature 4185178..4185873 /gene="ubiB" /locus_tag="STM3979" /note="FMN reductase; Validated; Region: fre; PRK08051" /db_xref="CDD:236142" gene 4186124..4186843 /locus_tag="STM3980" /db_xref="GeneID:1255506" regulatory 4186124..4186129 /regulatory_class="ribosome_binding_site" /locus_tag="STM3980" /note="putative RBS for STM3980; RegulonDB:STMS1H003915" CDS 4186130..4186843 /locus_tag="STM3980" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_462865.1" /db_xref="GeneID:1255506" /translation="MKFKYALTSLALSVAILSSVPSTAFAIGGASGAKVDYQVQGKIG EVVMNPYDIAPLTAVIRNGGYQLRDVHVRIVPKENGQEIAYKVNNKYLLTYGGIPVFG LYPDYVNTVEVEYTSIQGSKTENVKESYKMYAPPAYIESAGTKEEQSALFTIDVKKVS PEFKDRLYLLNNTKDKSGNGTRTVWNNPTGGALEWNFTTANAIIDTSGDIRWFMNPSS IYDLKSIYRAGVMMGFKQN" misc_feature 4186262..4186534 /locus_tag="STM3980" /note="Arylsulfotransferase Ig-like domain; Region: Arylsulfotran_N; pfam17425" /db_xref="CDD:407495" misc_feature 4186595..>4186798 /locus_tag="STM3980" /note="Arylsulfotransferase (ASST); Region: Arylsulfotrans; cl26042" /db_xref="CDD:421257" gene 4186892..4187953 /locus_tag="STM3981" /db_xref="GeneID:1255507" regulatory 4186892..4186897 /regulatory_class="ribosome_binding_site" /locus_tag="STM3981" /note="putative RBS for STM3981; RegulonDB:STMS1H003916" CDS 4186895..4187953 /locus_tag="STM3981" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462866.1" /db_xref="GeneID:1255507" /translation="MGREIFNRRLPDNYNDFSHSMDNAANGHYFLRVASSNYKRPDGK NVRTVRDVIAEVDQNGVVVDEWRLFDILDPYRDVIMKTLDQGAVCLNIDASQSGHTLS EEDLAALDSSDKFGDIVGSGAGRNWAHVNSVDYDSEDDSIIISSRHQSAIIKIGRDKK VKWILGTPAGWKAPFNAAILTPVDSKGQKIACQDSGCEGDFDWTWTQHTAFKIDSKSK GDILYLSAFDNGDGRGLEQPAMQSMKYSRSVIYKIDQKNKTVQQIWQYGKERGNEWFS PVTSITEYQTDKNSVFVYSATAGGAFDLSVGAFTSLPNPYLEEFKWGEKEPAVEMQIH GARGYQAMPFSLTKALTE" misc_feature 4186895..4187908 /locus_tag="STM3981" /note="Arylsulfotransferase (ASST); Region: Arylsulfotrans; pfam05935" /db_xref="CDD:399139" gene complement(4188150..4189324) /gene="fadA" /locus_tag="STM3982" /db_xref="GeneID:1255508" CDS complement(4188150..4189313) /gene="fadA" /locus_tag="STM3982" /EC_number="2.3.1.16" /note="similar to E. coli thiolase I; 3-ketoacyl-CoA thiolase; acetyl-CoA transferase (AAC76848.1); Blastp hit to AAC76848.1 (387 aa), 94% identity in aa 1 - 387; forms complex with FadB" /codon_start=1 /transl_table=11 /product="3-ketoacyl-CoA thiolase" /protein_id="NP_462867.1" /db_xref="GeneID:1255508" /translation="MEQVVIVDAIRTPMGRSKGGAFRNVRAEDLSAHLMRSLLARNPS LTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRLCGSSMQALHDAA RMIMTGDAQVCLVGGVEHMGHVPMSHGVDFHPGLSRNVAKAAGMMGLTAEMLSRLHGI SREMQDQFAARSHARAWAATQSGAFKTEIIPTGGHDADGVLKQFNYDEVIRPETTVEA LSTLRPAFDPVSGTVTAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCD PSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINL NGGAIALGHPLGCSGARISTTLINLMERKDAQFGLATMCIGLGQGIATVFERV" misc_feature complement(4188153..4189313) /gene="fadA" /locus_tag="STM3982" /note="3-ketoacyl-CoA thiolase; Reviewed; Region: fadA; PRK08947" /db_xref="CDD:181592" regulatory complement(4189319..4189324) /regulatory_class="ribosome_binding_site" /gene="fadA" /locus_tag="STM3982" /note="putative RBS for fadA; RegulonDB:STMS1H003917" gene complement(4189323..4191593) /gene="fadB" /locus_tag="STM3983" /db_xref="GeneID:1255509" CDS complement(4189323..4191512) /gene="fadB" /locus_tag="STM3983" /EC_number="4.2.1.17" /EC_number="5.1.2.3" /EC_number="2.3.1.16" /EC_number="1.1.1.35" /note="similar to E. coli 4-enzyme protein: 3-hydroxyacyl-CoA dehydrogenase; 3-hydroxybutyryl-CoA epimerase; delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase; enoyl-CoA hydratase (AAC76849.1); Blastp hit to AAC76849.1 (729 aa), 95% identity in aa 1 - 729" /codon_start=1 /transl_table=11 /product="3-hydroxyacyl-coA dehydrogenase of 4-enzyme FadB protein" /protein_id="NP_462868.1" /db_xref="GeneID:1255509" /translation="MLYKGDTLYLDWLEDGIAELVFDAPGSVNKLDTATVASLGQALE VLEKQHDLKGLLLRSNKAAFIVGADITEFLSLFLVPEEQLSQWLHFANSVFNRLEDLP VPTLAAVNGYALGGGCECVLATDYRLATPDLRIGLPETKLGIMPGFGGSVRLPRMLGA DSALEIIAAGKDVGAEHALKIGLVDGVVKQEKLIEGAIAVLRQAITGDLDWRAKRQPK LEPLKLSKIEAAMSFTIAKGMVAQTAGKHYPAPMTAVKTIEAAARFGREEALNLENKS FVPLAHTNEARALVGIFLNDQYVKGKAKKLTKDIETPKQAAVLGAGIMGGGIAYQSAW KGVPVIMKDINDKSLNLGMTEAAKLLNKQLERGKIDGLKLAGVISTIHPTLDYAGFDR VDVVVEAVVENPKVKKAVLAETEQKVRPETVLASNTSTIPIGELASALERPENFCGMH FFNPVHRMPLVEIIRGEKSSDETIAKVVAWASKMGKTPIVVNDCPGFFVNRVLFPYFA GFSQLLRDGADFRKVDKVMEKQFGWPMGPAYLLDVVGIDTAHHAQAVMAAGFPQRMQK DYRDAIDALFDASRFGQKNGLGFWRYKEDSKGKPKKEEDAAVDDLLASVSQPKRDFSD DEIIARMMIPMINEVVRCLEEGIIASPAEADMALVYGLGFPPFHGGAFRWLDTQGSAK YLDMAQQYQHLGPLYEVPEGLRNKARHNEPYYPPVEPARPVGSLKTA" misc_feature complement(4189368..4191512) /gene="fadB" /locus_tag="STM3983" /note="fatty acid oxidation complex subunit alpha FadB; Region: fadB; PRK11730" /db_xref="CDD:183293" regulatory complement(4191519..4191524) /regulatory_class="ribosome_binding_site" /gene="fadB" /locus_tag="STM3983" /note="putative RBS for fadB; RegulonDB:STMS1H003918" protein_bind complement(4191533..4191551) /gene="fadB" /locus_tag="STM3983" /note="putative binding site for FadR, RegulonDB: STMS1H000182" /bound_moiety="FadR" regulatory complement(4191569..4191577) /regulatory_class="minus_10_signal" /gene="fadB" /locus_tag="STM3983" /note="putative -10_signal for fadB; RegulonDB:STMLTH004637" regulatory complement(4191585..4191593) /regulatory_class="minus_35_signal" /gene="fadB" /locus_tag="STM3983" /note="putative -35_signal for fadB; RegulonDB:STMLTH004637" gene 4191688..4193033 /gene="pepQ" /locus_tag="STM3984" /db_xref="GeneID:1255510" regulatory 4191688..4191693 /regulatory_class="ribosome_binding_site" /gene="pepQ" /locus_tag="STM3984" /note="putative RBS for pepQ; RegulonDB:STMS1H003919" CDS 4191702..4193033 /gene="pepQ" /locus_tag="STM3984" /EC_number="3.4.13.9" /note="similar to E. coli proline dipeptidase (AAC76850.1); Blastp hit to AAC76850.1 (443 aa), 95% identity in aa 1 - 443" /codon_start=1 /transl_table=11 /product="proline dipeptidase" /protein_id="NP_462869.1" /db_xref="GeneID:1255510" /translation="MESLAALYKNHIVTLQERTRDVLARFKLDALLIHSGELFNVFLD DHPYPFKVNPQFKAWVPVTQVPNCWLLVDGVNKPKLWFYLPVDYWHNVEPLPTSFWTE EVEVVALPKADGIGSQLPAARGNIGYIGPVPERALQLDIAASNINPKGVIDYLHYYRA YKTDYELACMREAQKMAVSGHRAAEEAFRSGMSEFDINLAYLTATGHRDTDVPYSNIV ALNEHAAVLHYTKLDHQAPSEMRSFLLDAGAEYNGYAADLTRTWSAKSDNDYAHLVKD VNDEQLALIATMKAGVSYVDYHIQFHQRIAKLLRKHQIITDMSEEAMVENDLTGPFMP HGIGHPLGLQVHDVAGFMQDDSGTHLAAPSKYPYLRCTRVLQPRMVLTIEPGIYFIES LLAPWREGPFSKHFNWQKIEALKPFGGIRIEDNVVIHENGVENMTRDLKLA" misc_feature 4191702..4193030 /gene="pepQ" /locus_tag="STM3984" /note="proline dipeptidase; Provisional; Region: PRK13607" /db_xref="CDD:237444" gene 4193025..4193647 /gene="yigZ" /locus_tag="STM3985" /db_xref="GeneID:1255511" regulatory 4193025..4193030 /regulatory_class="ribosome_binding_site" /gene="yigZ" /locus_tag="STM3985" /note="putative RBS for yigZ; RegulonDB:STMS1H003920" CDS 4193033..4193647 /gene="yigZ" /locus_tag="STM3985" /note="similar to E. coli orf, hypothetical protein (AAC76851.1); Blastp hit to AAC76851.1 (205 aa), 91% identity in aa 2 - 205" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462870.1" /db_xref="GeneID:1255511" /translation="MDSWLIPAAPVTVVEEIKKSRFITLLAHTDGVDAAKAFVESVRA EHPDARHHCVAWVAGAPDDSQQLGFSDDGEPAGTAGKPMLAQLMGSGVGEITAVVVRY YSGILLGTGGLVKAYGGGVNQALRQLATQRKTPLTEYTLQCEYGQLAGIEALLGQFAG KIVSSDYQASVRLRVALPFAHVNAFSTKLADFSRGSLQLLAIEE" misc_feature 4193033..4193644 /gene="yigZ" /locus_tag="STM3985" /note="IMPACT family protein; Region: PRK11568" /db_xref="CDD:183205" gene 4193671..4195137 /gene="trkH" /locus_tag="STM3986" /db_xref="GeneID:1255512" regulatory 4193671..4193676 /regulatory_class="ribosome_binding_site" /gene="trkH" /locus_tag="STM3986" /note="putative RBS for trkH; RegulonDB:STMS1H003921" CDS 4193686..4195137 /gene="trkH" /locus_tag="STM3986" /note="requires TrkE; similar to E. coli potassium uptake, requires TrkE (AAC76852.1); Blastp hit to AAC76852.1 (432 aa), 28% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="Trk family potassium transport protein" /protein_id="NP_462871.1" /db_xref="GeneID:1255512" /translation="MHFRAITRIVGLLVILFSGTMILPGLVALIYRDGAGRAFTQTFF VALAIGSILWWPNRREKGELKSREGFLIVVLFWTVLGSVGALPFIFSESPNLTITDAF FESFSGLTTTGATTLVGLDSLPHAILFYRQMLQWFGGMGIIVLAVAILPILGVGGMQL YRAEMPGPLKDNKMRPRIAETAKTLWLIYVLLTVACALALWFAGMPAFDAIGHSFSTI AIGGFSTHDASVGYFDSPTINTIIAIFLLISGCNYGLHFSLLSGRSLKVYWRDPEFRM FIGVQLTLVVICTLVLWFHNIYDSALTTLNQAFFQVVSMATTAGFTTDSIARWPLFLP VLLLCSAFIGGCAGSTGGGLKVIRILLLFKQGNRELKRLVHPNAVYSIKLGNRALPER ILEAVWGFFSAYALVFIVSMLAIIATGVDDFSAFASVVATLNNLGPGLGVVADNFASM NPVAKWILIANMLFGRLEVFTLLVLFTPTFWRE" misc_feature 4193686..4195134 /gene="trkH" /locus_tag="STM3986" /note="Trk system potassium transporter TrkH; Region: PRK10750" /db_xref="CDD:182698" gene 4195137..4195694 /gene="hemG" /locus_tag="STM3987" /db_xref="GeneID:1255513" regulatory 4195137..4195142 /regulatory_class="ribosome_binding_site" /gene="hemG" /locus_tag="STM3987" /note="putative RBS for hemG; RegulonDB:STMS1H003922" CDS 4195149..4195694 /gene="hemG" /locus_tag="STM3987" /EC_number="1.3.3.4" /note="similar to E. coli protoporphyrin oxidase (AAC76853.1); Blastp hit to AAC76853.1 (181 aa), 87% identity in aa 1 - 181" /codon_start=1 /transl_table=11 /product="protoporphyrin oxidase" /protein_id="NP_462872.1" /db_xref="GeneID:1255513" /translation="MKTLILFSTRDGQTREIASYLASELKDMGIWADVVNLHRAEEPD WDSYDRVVIGASIRYGHYHSAFQEFVKKYATRLNGMPSAFYSVNLVARKAEKRTPQTN SYARKFLMSSPWRPDYCAVIAGALRYPRYRWYDRLMIKLIMKMSGGETDTSKEVVYTD WEQVAHFAREIAHLTNKSSAK" misc_feature 4195149..4195682 /gene="hemG" /locus_tag="STM3987" /note="menaquinone-dependent protoporphyrinogen IX dehydrogenase; Region: hemG; PRK11104" /db_xref="CDD:182966" gene 4196072..4197613 /gene="rrsA" /locus_tag="STM3988" /db_xref="GeneID:1255514" rRNA 4196072..4197613 /gene="rrsA" /locus_tag="STM3988" /product="16S ribosomal RNA" /db_xref="GeneID:1255514" gene 4197683..4197756 /gene="ileT" /locus_tag="STM3989" /db_xref="GeneID:1255515" tRNA 4197683..4197756 /gene="ileT" /locus_tag="STM3989" /product="tRNA-Ile" /db_xref="GeneID:1255515" gene 4197871..4197943 /gene="alaT" /locus_tag="STM3990" /db_xref="GeneID:1255516" tRNA 4197871..4197943 /gene="alaT" /locus_tag="STM3990" /product="tRNA-Asx" /db_xref="GeneID:1255516" gene 4198129..4201123 /gene="rrlA" /locus_tag="STM3991" /db_xref="GeneID:1255517" rRNA 4198129..4201123 /gene="rrlA" /locus_tag="STM3991" /product="23S ribosomal RNA" /db_xref="GeneID:1255517" gene 4201315..4201436 /gene="rrfA" /locus_tag="STM3992" /db_xref="GeneID:1255518" rRNA 4201315..4201436 /gene="rrfA" /locus_tag="STM3992" /product="5S ribosomal RNA" /db_xref="GeneID:1255518" gene complement(4201697..4202227) /gene="mobB" /locus_tag="STM3993" /db_xref="GeneID:1255519" CDS complement(4201697..4202212) /gene="mobB" /locus_tag="STM3993" /note="GTP-binding; similar to E. coli molybdopterin-guanine dinucleotide biosynthesis protein B (AAC76854.1); Blastp hit to AAC76854.1 (170 aa), 77% identity in aa 1 - 167" /codon_start=1 /transl_table=11 /product="molybdopterin-guanine dinucleotide biosynthesis protein B" /protein_id="NP_462873.1" /db_xref="GeneID:1255519" /translation="MIPLLAIAAWSGTGKTTLLKKLIPALCAHGIRPGLIKHTHHDMD VDKPGKDSYELRKAGAAQTLVASQQRWALMTETPGQEELDLAWLVSRMDASKLDMVLV EGFKHEAVAKILLFRQGCGHSEEELILDEHVIAVASDIPLAVAVPVLDLNDVSQISAF ILRWLEKARSL" misc_feature complement(4201706..4202212) /gene="mobB" /locus_tag="STM3993" /note="molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional; Region: PRK10751" /db_xref="CDD:236750" misc_feature complement(order(4201793..4201798,4201895..4201897, 4201904..4201906,4202096..4202098,4202102..4202104, 4202162..4202182)) /gene="mobB" /locus_tag="STM3993" /note="putative active site [active]" /db_xref="CDD:349770" misc_feature complement(order(4201943..4201948,4201958..4201963, 4201988..4202011,4202018..4202041,4202048..4202053, 4202096..4202116,4202132..4202134,4202141..4202146, 4202153..4202155)) /gene="mobB" /locus_tag="STM3993" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349770" gene complement(4202209..4202805) /gene="mobA" /locus_tag="STM3994" /db_xref="GeneID:1255520" CDS complement(4202209..4202793) /gene="mobA" /locus_tag="STM3994" /note="similar to E. coli molybdopterin ---> molybdopterin-guanine dinucleotide, protein Ar (AAC76855.1); Blastp hit to AAC76855.1 (194 aa), 77% identity in aa 1 - 193" /codon_start=1 /transl_table=11 /product="putative molybdopterin-guanine dinucleotide biosynthesis protein" /protein_id="NP_462874.1" /db_xref="GeneID:1255520" /translation="MNLDEVITGVVLAGGKARRMGGADKGLLELGGKPLWRHVADALA PQLATVVISANRHLDIYQASGLKVIPDSIADFPGPLAGMLSVFQQVAGDWFLFCPCDN PCIPHNLVDRLAAQRHGAPVVWVHDGERDHPTIALINRAVEPQLTAYLQAGERRVMIF MRQVGGHAVDFSDCKEAFVNVNTPEELAQWQKRP" misc_feature complement(4202215..4202775) /gene="mobA" /locus_tag="STM3994" /note="molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed; Region: mobA; PRK00317" /db_xref="CDD:234725" misc_feature complement(order(4202491..4202493,4202497..4202499, 4202548..4202550,4202557..4202562,4202581..4202583, 4202635..4202637,4202719..4202721,4202746..4202748, 4202752..4202760)) /gene="mobA" /locus_tag="STM3994" /note="GTP binding site [active]" /db_xref="CDD:133000" regulatory complement(4202222..4202227) /regulatory_class="ribosome_binding_site" /gene="mobB" /locus_tag="STM3993" /note="putative RBS for mobB; RegulonDB:STMS1H003926" regulatory complement(4202800..4202805) /regulatory_class="ribosome_binding_site" /gene="mobA" /locus_tag="STM3994" /note="putative RBS for mobA; RegulonDB:STMS1H003927" gene 4202850..4203132 /gene="yihD" /locus_tag="STM3995" /db_xref="GeneID:1255521" regulatory 4202850..4202855 /regulatory_class="ribosome_binding_site" /gene="yihD" /locus_tag="STM3995" /note="putative RBS for yihD; RegulonDB:STMS1H003928" CDS 4202863..4203132 /gene="yihD" /locus_tag="STM3995" /note="similar to E. coli orf, hypothetical protein (AAC76856.1); Blastp hit to AAC76856.1 (89 aa), 94% identity in aa 1 - 89" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462875.1" /db_xref="GeneID:1255521" /translation="MKCKRLNEVIELLQPAWQKEPDLNLTQFLQKLAKESGFDGKLED LTDDILIYHLKMRDSAKDAAIPGIQKDYEEDFKTALLRARGVIKE" misc_feature 4202863..4203129 /gene="yihD" /locus_tag="STM3995" /note="Uncharacterized conserved protein YihD, DUF1040 family [Function unknown]; Region: YihD; COG3084" /db_xref="CDD:442318" gene 4203197..4204195 /gene="yihE" /locus_tag="STM3996" /db_xref="GeneID:1255522" regulatory 4203197..4203202 /regulatory_class="ribosome_binding_site" /gene="yihE" /locus_tag="STM3996" /note="putative RBS for yihE; RegulonDB:STMS1H003929" CDS 4203209..4204195 /gene="yihE" /locus_tag="STM3996" /note="protein kinase; similar to E. coli orf, hypothetical protein (AAC76857.1); Blastp hit to AAC76857.1 (328 aa), 85% identity in aa 1 - 328" /codon_start=1 /transl_table=11 /product="putative homoserine kinase type II" /protein_id="NP_462876.1" /db_xref="GeneID:1255522" /translation="MNDNAFTFQTLHPETIMDALFEQGIMVDSGLTPLNSYENRVYQF QDEDRRRFVVKFYRPERWSVDQIREEHQFALELVKDEVPVAAPLAFNGQTLLAHQGYH YAIFPSVGGRQFEADNIDQMEAVGRYLGRLHQTGRKRPFTFRPDIGLAEYLFEPRQVF EDAALIPSGQKAAFLKATDTLLSAVTECWRTDFATLRLHGDCHAGNILWRDGPLFVDL DDARNGPAIQDLWMLLNGDKAEQRMQLETIIEAYEEVSEFDTAEIGLIEPLRAMRLVY YLAWLIRRWGDPAFPKNFPWLTGEDYWQRQTTTFIEQTKILHEPPLQLTPMY" misc_feature 4203209..4204180 /gene="yihE" /locus_tag="STM3996" /note="serine/threonine protein kinase; Region: PRK11768" /db_xref="CDD:236974" gene 4204196..4204835 /gene="dsbA" /locus_tag="STM3997" /db_xref="GeneID:1255523" regulatory 4204196..4204201 /regulatory_class="ribosome_binding_site" /gene="dsbA" /locus_tag="STM3997" /note="putative RBS for dsbA; RegulonDB:STMS1H003930" CDS 4204212..4204835 /gene="dsbA" /locus_tag="STM3997" /note="thiol:disulfide interchange protein DABA precursor. (SW:DSBA_SALTY)" /codon_start=1 /transl_table=11 /product="periplasmic protein disulfide isomerase I" /protein_id="NP_462877.1" /db_xref="GeneID:1255523" /translation="MKKIWLALAGMVLAFSASAAQISDGKQYITLDKPVAGEPQVLEF FSFYCPHCYQFEEVLHVSDNVKKKLPEGTKMTKYHVEFLGPLGKELTQAWAVAMALGV EDKVTVPLFEAVQKTQTVQSAADIRKVFVDAGVKGEDYDAAWNSFVVKSLVAQQEKAA ADLQLQGVPAMFVNGKYQINPQGMDTSSMDVFVQQYADTVKYLVDKK" misc_feature 4204212..4204832 /gene="dsbA" /locus_tag="STM3997" /note="thiol:disulfide interchange protein DsbA; Region: PRK10954" /db_xref="CDD:182863" misc_feature order(4204356..4204358,4204362..4204367,4204716..4204718) /gene="dsbA" /locus_tag="STM3997" /note="catalytic residues [active]" /db_xref="CDD:239317" misc_feature 4204455..4204463 /gene="dsbA" /locus_tag="STM3997" /note="hinge region; other site" /db_xref="CDD:239317" misc_feature order(4204476..4204502,4204515..4204574,4204581..4204607, 4204623..4204652) /gene="dsbA" /locus_tag="STM3997" /note="alpha helical domain; other site" /db_xref="CDD:239317" gene complement(4204848..4205756) /gene="yihG" /locus_tag="STM3998" /db_xref="GeneID:1255524" CDS complement(4204848..4205756) /gene="yihG" /locus_tag="STM3998" /note="similar to E. coli putative endonuclease (AAC76860.1); Blastp hit to AAC76860.1 (310 aa), 82% identity in aa 10 - 307" /codon_start=1 /transl_table=11 /product="putative endonuclease" /protein_id="NP_462878.1" /db_xref="GeneID:1255524" /translation="MTRILAAITLPLSIVLTILVTIVCSVPIIIAGMVKLLLPVPGIW RKVSIFCNFMMYCWCAGLAALLRLNPHLQWDVEGLEGLSKKNWYLLICNHRSWADIVV LCVLFRKHIPMNKYFLKQQLAWVPFIGLACWALDMPFMKRYSRSYLLRHPDRRGKDVE TTRRSCEKFRRYPTTIVNFVEGSRFTHEKRQQTHSPYQHLLPPKAAGIAMAINVLGSQ FDKLLNITLCYPNNDRHPFYDMLSGRLTRIVVRVQLEPINEELHGDYVNDKTFKRRFQ RWLNTLWDKKDIQIEEIKTSYKNAGQ" misc_feature complement(4204854..4205756) /gene="yihG" /locus_tag="STM3998" /note="putative acyltransferase; Provisional; Region: PRK14014" /db_xref="CDD:237584" gene 4206130..4208930 /gene="polA" /locus_tag="STM3999" /db_xref="GeneID:1255525" regulatory 4206130..4206135 /regulatory_class="ribosome_binding_site" /gene="polA" /locus_tag="STM3999" /note="putative RBS for polA; RegulonDB:STMS1H003931" CDS 4206144..4208930 /gene="polA" /locus_tag="STM3999" /EC_number="2.7.7.7" /note="3'->5' polymerase, 5'->3' and 3'->5' exonuclease; similar to E. coli DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease (AAC76861.1); Blastp hit to AAC76861.1 (928 aa), 93% identity in aa 1 - 928" /codon_start=1 /transl_table=11 /product="DNA polymerase I" /protein_id="NP_462879.1" /db_xref="GeneID:1255525" /translation="MVQIPENPLILVDGSSYLYRAYHAFPPLTNSAGEPTGAMYGVLN MLRSLIMQYQPTHAAVVFDAKGKTFRDELFEHYKSHRPPMPDDLRAQIEPLHAMVKAM GLPLLAVSGVEADDVIGTLAREAEKVGRPVLISTGDKDMAQLVTPNITLINTMTNTIL GPDEVVNKYGVPPELIIDFLALMGDSSDNIPGVPGVGEKTAQALLQGLGGLDTLYAEP EKIAGLTFRGAKTMAGKLAQNKDVAYLSYKLATIKTDVELELTCEQLEVQQPIADELL GLFKKYEFKRWTADVESGKWLQAKGAKPAAKPQETVVIDESPSEPAAALSYENYVTIL DDVTLESWIEKLKKAPVFAFDTETDSLDNIAANLVGLSFAIEPGVAAYVPVAHDYLDA PDQISRQRALELLKPLLEDEKVRKVGQNLKYDRGVLQNYGIELRGIAFDTMLESYILN SVAGRHDMDSLSDRWLKHKTITFEDIAGKGKNQLTFNQIALEEAGRYAAEDADVTLQL HLKMWPELQQHKGPLNVFENIEMPLVPVLSRVERNGVKIDPAVLHKHSEEITLRLAEL EKKAHDIAGEAFNLSSTKQLQTILFEKQGIKPLKKTPGGAPSTSEEVLEELALDYPLP KVILEYRGLAKLKSTYTDKLPLMINPKTGRVHTSYHQAVTATGRLSSTDPNLQNIPVR NEEGRRIRQAFIAPEDYLIVSADYSQIELRIMAHLSRDKGLLTAFAEGKDIHRATAAE VFGLPLDSVTGEQRRSAKAINFGLIYGMSAFGLSRQLNIPRKEAQKYMDLYFERYPGV LEYMERTRAQAKEQGYVETLEGRRLYLPDIKSSNAARRAGAERAAINAPMQGTAADII KRAMIAVDAWLQAEQPRVRMIMQVHDELVFEVHKDDLDAVAKRIHQLMENCTRIDVPL LVEVGSGENWDQAH" misc_feature 4206159..4208927 /gene="polA" /locus_tag="STM3999" /note="DNA polymerase I; Provisional; Region: PRK05755" /db_xref="CDD:235591" gene 4209089..4209144 /gene="spf" /locus_tag="STM4000" /db_xref="GeneID:2673732" regulatory 4209089..4209094 /regulatory_class="ribosome_binding_site" /gene="spf" /locus_tag="STM4000" /note="putative RBS for spf; RegulonDB:STMS1H003932" CDS 4209097..4209144 /gene="spf" /locus_tag="STM4000" /codon_start=1 /transl_table=11 /product="spot 42 RNA, inhibition of DNA synthesis" /protein_id="NP_453290.1" /db_xref="GeneID:2673732" /translation="MFYLSDLLLHVIGFG" gene complement(4209265..4209912) /gene="yihA" /locus_tag="STM4001" /db_xref="GeneID:1255527" CDS complement(4209265..4209897) /gene="yihA" /locus_tag="STM4001" /note="similar to E. coli orf, hypothetical protein (AAC76862.1); Blastp hit to AAC76862.1 (199 aa), 94% identity in aa 1 - 199" /codon_start=1 /transl_table=11 /product="putative GTPase involved in coordination of cell cycle" /protein_id="NP_462881.1" /db_xref="GeneID:1255527" /translation="MTNLNYQQTHFVMSAPDIRHLPSDCGIEVAFAGRSNAGKSSALN TLTNQKSLARTSKTPGRTQLINLFEVVDGKRLVDLPGYGYAEVPEEMKRKWQRALGEY LEKRQSLQGLVVLMDIRHPLKDLDQQMIQWAVESNIQVLVLLTKADKLASGARKAQLN MVREAVLAFNGDVQVEAFSSLKKQGVDKLRQKLDSWFSELAPVEEIQDGE" misc_feature complement(4209307..4209885) /gene="yihA" /locus_tag="STM4001" /note="GTP-binding protein EngB required for normal cell division [Cell cycle control, cell division, chromosome partitioning]; Region: EngB; COG0218" /db_xref="CDD:439988" regulatory complement(4209907..4209912) /regulatory_class="ribosome_binding_site" /gene="yihA" /locus_tag="STM4001" /note="putative RBS for yihA; RegulonDB:STMS1H003933" gene 4210134..4210361 /locus_tag="STM4002" /db_xref="GeneID:1255528" regulatory 4210134..4210139 /regulatory_class="ribosome_binding_site" /locus_tag="STM4002" /note="putative RBS for STM4002; RegulonDB:STMS1H003934" CDS 4210137..4210361 /locus_tag="STM4002" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462882.1" /db_xref="GeneID:1255528" /translation="MSLPQKSKVMHIARTLTGSTTQDEGQERQEAKTQDCQEDKRPET LVKGNGNNMECSRLREKQGVLIANRDGGTR" gene 4210480..4210995 /gene="yihI" /locus_tag="STM4003" /db_xref="GeneID:1255529" CDS 4210480..4210995 /gene="yihI" /locus_tag="STM4003" /note="hypothetical 19.2 Kda protein in polA-hemN intergenic region. (SW:YIHI_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462883.1" /db_xref="GeneID:1255529" /translation="MKKPTSAPRSKAFGKQRRKTREELNQEARDRKRLKKHRGHAPGS RAAGGNSASGGGNQNQQKDPRIGSKTPVPLGVTEKVTQQHKPKSEKPMLSPQAELDLL ETDERLDALLERLEAGETLSAEDQAWVDAKLDRIDELMQKLGLSYDDDEEDDEEDEKQ EDMMRLLRGGN" misc_feature 4210480..4210992 /gene="yihI" /locus_tag="STM4003" /note="Ribosome assembly protein YihI, activator of Der GTPase [Translation, ribosomal structure and biogenesis]; Region: YihI; COG3078" /db_xref="CDD:442312" gene 4211173..4212557 /gene="hemN" /locus_tag="STM4004" /db_xref="GeneID:1255530" regulatory 4211173..4211178 /regulatory_class="ribosome_binding_site" /gene="hemN" /locus_tag="STM4004" /note="putative RBS for hemN; RegulonDB:STMS1H003935" CDS 4211184..4212557 /gene="hemN" /locus_tag="STM4004" /EC_number="1.-.-.-" /note="oxygen-independent coproporphyrinogen III oxidase. (SW:HEMN_SALTY)" /codon_start=1 /transl_table=11 /product="O2-independent coproporphyrinogen III oxidase" /protein_id="NP_462884.1" /db_xref="GeneID:1255530" /translation="MSEQQIDWDLALIQKYNYSGPRYTSYPTALEFSEDFEDAAFLQA VARYPERPLSLYVHIPFCHKLCYFCGCNKIVTRQQHKADQYLDALEQEIRHRAPLFAD RHVSQLHWGGGTPTYLNKAQISRLMTLLRENFHFNTDAEISIEVDPREIELDVLDHLR AEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHARDIGFTSTNIDLIYGLPKQT PESFAFTLKRVTELNPDRLSVFNYAHLPTLFAAQRKIKDADLPSAQQKLDILQETIVS LTQAGYQFIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGD GYMQNQKELKRYYQQVDERGNALWRGITLTRDDCIRRDVIKALICNFRLDFNAVEQQW GLHFAEYFAEDLQLLSPLAKDGLVDISEKGIQVTAKGRLLIRNICMCFDAYLRQKARM QQFSRVI" misc_feature 4211199..4212554 /gene="hemN" /locus_tag="STM4004" /note="oxygen-independent coproporphyrinogen III oxidase; Region: hemN; TIGR00538" /db_xref="CDD:129629" gene complement(4212870..4214288) /gene="glnG" /locus_tag="STM4005" /db_xref="GeneID:1255531" CDS complement(4212870..4214279) /gene="glnG" /locus_tag="STM4005" /note="nitrogen regulation protein NR(I). (SW:NTRC_SALTY)" /codon_start=1 /transl_table=11 /product="EBP family response regulator in two-component regulatory system with GlnL" /protein_id="NP_462885.1" /db_xref="GeneID:1255531" /translation="MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALA SKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYL PKPFDIDEAVALVERAISHYQEQQQPRNIEVNGPTTDMIGEAPAMQDVFRIIGRLSRS SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFT GANTIRQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRI IAATHQNLERRVQEGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLQVAARELG VEAKLLHPETETALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFEASTPD SPSHLPPDSWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAAR LLGWGRNTLTRKLKELGME" misc_feature complement(4212873..4214279) /gene="glnG" /locus_tag="STM4005" /note="nitrogen regulation protein NR(I); Provisional; Region: glnG; PRK10923" /db_xref="CDD:182842" regulatory complement(4214283..4214288) /regulatory_class="ribosome_binding_site" /gene="glnG" /locus_tag="STM4005" /note="putative RBS for glnG; RegulonDB:STMS1H003936" gene complement(4214288..4215410) /gene="glnL" /locus_tag="STM4006" /db_xref="GeneID:1255532" CDS complement(4214288..4215337) /gene="glnL" /locus_tag="STM4006" /EC_number="2.7.3.-" /note="nitrogen regulation protein nr(II). (SW:NTRB_SALTY)" /codon_start=1 /transl_table=11 /product="sensory kinase (phosphatase) in two-component regulatory system with GlnG (nitrogen regulator II, NRII)" /protein_id="NP_462886.1" /db_xref="GeneID:1255532" /translation="MASGIQPDAGQILNSLINSVLVVDDALAIHYANPAAQQLLAQSS RKLFGTPLPELLSYFSLNIDLMRESLAAGQGFTDNEVTLVIDSRSHILSLTAQRLPDD FILLEMAPMDNQRRLSQEQLQHAQQIAARDLVRGLAHEIKNPLGGLRGAAQLLSKALP DPALTEYTKVIIEQADRLRNLVDRLLGPQHPGMHITESIHKVAERVVALVSMELPDNV RLIRDYDPSLPELPHDPEQIEQVLLNIVRNALQALGPEGGEITLRTRTAFQLTLHGER YRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHAGKIEFTS WPGHTEFSVYLPIRK" misc_feature complement(4214294..4215337) /gene="glnL" /locus_tag="STM4006" /note="nitrogen regulation protein NR(II); Region: glnL; PRK11073" /db_xref="CDD:182947" regulatory complement(4215346..4215351) /regulatory_class="ribosome_binding_site" /gene="glnL" /locus_tag="STM4006" /note="putative RBS for glnL; RegulonDB:STMS1H003937" protein_bind complement(4215359..4215376) /gene="glnL" /locus_tag="STM4006" /note="putative binding site for NR(I), RegulonDB: STMS1H000292" /bound_moiety="NR(I)" regulatory complement(4215383..4215391) /regulatory_class="minus_10_signal" /gene="glnL" /locus_tag="STM4006" /note="putative -10_signal for glnL; RegulonDB:STMLTH004638" regulatory complement(4215402..4215410) /regulatory_class="minus_35_signal" /gene="glnL" /locus_tag="STM4006" /note="putative -35_signal for glnL; RegulonDB:STMLTH004638" gene complement(4215612..4217110) /gene="glnA" /locus_tag="STM4007" /db_xref="GeneID:1255533" CDS complement(4215612..4217021) /gene="glnA" /locus_tag="STM4007" /EC_number="6.3.1.2" /note="glutamine synthetase. (SW:GLNA_SALTY)" /codon_start=1 /transl_table=11 /product="glutamine synthetase" /protein_id="NP_462887.1" /db_xref="GeneID:1255533" /translation="MSAEHVLTMLNEHEVKFVDLRFTDTKGKEQHVTIPAHQVNAEFF EEGKMFDGSSIGGWKGINESDMVLMPDASTAVIDPFFADSTLIIRCDILEPGTLQGYD RDPRSIAKRAEDYLRATGIADTVLFGPEPEFFLFDDIRFGASISGSHVAIDDIEGAWN SSTKYEGGNKGHRPGVKGGYFPVPPVDSAQDIRSEMCLVMEQMGLVVEAHHHEVATAG QNEVATRFNTMTKKADEIQIYKYVVHNVAHRFGKTATFMPKPMFGDNGSGMHCHMSLA KNGTNLFSGDKYAGLSEQALYYIGGVIKHAKAINALANPTTNSYKRLVPGYEAPVMLA YSARNRSASIRIPVVASPKARRIEVRFPDPAANPYLCFAALLMAGLDGIKNKIHPGEA MDKNLYDLPPEEAKEIPQVAGSLEEALNALDLDREFLKAGGVFTDEAIDAYIALRREE DDRVRMTPHPVEFELYYSV" misc_feature complement(4215615..4217021) /gene="glnA" /locus_tag="STM4007" /note="glutamate--ammonia ligase; Region: glnA; PRK09469" /db_xref="CDD:181884" gene complement(4217000..4217432) /locus_tag="STM4008" /db_xref="GeneID:1255534" CDS complement(4217000..4217428) /locus_tag="STM4008" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_453298.1" /db_xref="GeneID:1255534" /translation="MMAMLRKFSITTLPQALEIARYCTRINRTTKQDHKHPPQTSIAE SLCDRFHGALKGWLAFCCTNVVLNVHIKALFWCNIVTVVQPFCTMVRMITPFGGNVKV GTDFALYFYGDTASRIEDLVTTTTDHDQSGRVQVCPLNTF" regulatory complement(4217032..4217037) /regulatory_class="ribosome_binding_site" /locus_tag="STM4008" /note="putative RBS for glnA; RegulonDB:STMS1H003938" regulatory complement(4217083..4217091) /regulatory_class="minus_10_signal" /locus_tag="STM4008" /note="putative -10_signal for glnA; RegulonDB:STMLTH004639" regulatory complement(4217102..4217110) /regulatory_class="minus_35_signal" /locus_tag="STM4008" /note="putative -35_signal for glnA; RegulonDB:STMLTH004639" protein_bind complement(4217157..4217163) /locus_tag="STM4008" /note="putative binding site for NR(I), RegulonDB: STMS1H000293" /bound_moiety="NR(I)" protein_bind complement(4217195..4217211) /locus_tag="STM4008" /note="putative binding site for NR(I), RegulonDB: STMS1H000299" /bound_moiety="NR(I)" protein_bind complement(4217227..4217243) /locus_tag="STM4008" /note="putative binding site for NR(I), RegulonDB: STMS1H000298" /bound_moiety="NR(I)" protein_bind complement(4217229..4217245) /locus_tag="STM4008" /note="putative binding site for NR(I), RegulonDB: STMS1H000296" /bound_moiety="NR(I)" protein_bind complement(4217270..4217290) /locus_tag="STM4008" /note="putative binding site for CRP, RegulonDB: STMS1H000102" /bound_moiety="CRP" gene 4217386..4219220 /gene="typA" /locus_tag="STM4009" /db_xref="GeneID:1255535" regulatory 4217386..4217391 /regulatory_class="ribosome_binding_site" /gene="typA" /locus_tag="STM4009" /note="putative RBS for typA; RegulonDB:STMS1H003940" CDS 4217397..4219220 /gene="typA" /locus_tag="STM4009" /note="similar to E. coli putative GTP-binding factor (AAC76868.1); Blastp hit to AAC76868.1 (591 aa), 96% identity in aa 1 - 591" /codon_start=1 /transl_table=11 /product="GTP-binding elongation factor family protein" /protein_id="NP_462889.1" /db_xref="GeneID:1255535" /translation="MIENLRNIAIIAHVDHGKTTLVDKLLQQSGTFDARAETQERVMD SNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAF DGPMPQTRFVTKKAFAHGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDF PIIYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPDVDLDGPLQMQISQLDYNNYV GVIGIGRIKRGKVKPNQQVTIIDSEGKTRNAKVGKVLTHLGLERIDSNIAEAGDIIAI TGLGELNISDTICDPQNVEALPALSVDEPTVSMFFCVNTSPFCGKEGKFVTSRQILDR LNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFREI DGRKQEPYENVTLDVEEQHQGSVMQALGERKGDLKNMNPDGKGRVRLDYVIPSRGLIG FRSEFMTMTSGTGLLYSTFSHYDDIRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRG KLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRASGTDEAVILVPPIKMSLE QALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRGQKEE" misc_feature 4217397..4219214 /gene="typA" /locus_tag="STM4009" /note="Predicted membrane GTPase TypA/BipA involved in stress response [Signal transduction mechanisms]; Region: TypA; COG1217" /db_xref="CDD:440830" regulatory complement(4217427..4217432) /regulatory_class="ribosome_binding_site" /locus_tag="STM4008" /note="putative RBS for STM4008; RegulonDB:STMS1H003939" gene complement(4219275..4220015) /locus_tag="STM4010" /db_xref="GeneID:1255536" CDS complement(4219275..4220009) /locus_tag="STM4010" /note="similar to E. coli putative phosphatase (AAC73853.1); Blastp hit to AAC73853.1 (272 aa), 44% identity in aa 147 - 267, 30% identity in aa 1 - 169" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_462890.1" /db_xref="GeneID:1255536" /translation="MRYRLIAFDLDGTLLNRNKQILPESLTAIRQMQDMGCRIMLVTG RSHREAYAYYQTLALTEPMICCNGSYIYQPAQQQILHPLPLTHLQTEKILARVYPLKP TIRADDKIIFQADELSSRENIWQISIVHRHIKQLQNIAEFIQHELHLSCTWSWHHQLD ILQKGCSKGQSLARYAQQQHIAMREVMAFGDNDNDAEMLRLAGLGVAMGNASARAKVY ADSVIGRHNTPAIADFLATLSLSQRE" misc_feature complement(4219305..4219997) /locus_tag="STM4010" /note="phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily; Region: HAD_Pase; cd07516" /db_xref="CDD:319818" misc_feature complement(order(4219425..4219430,4219434..4219442, 4219506..4219508,4219878..4219883,4219971..4219985)) /locus_tag="STM4010" /note="active site" /db_xref="CDD:319818" gene complement(4219994..4220876) /locus_tag="STM4011" /db_xref="GeneID:1255537" CDS complement(4219994..4220872) /locus_tag="STM4011" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462891.1" /db_xref="GeneID:1255537" /translation="MSAPALRDIHTLFYRGYLKSCNYHCGYCPFHKHARNDKKRDEAA LWRMVDHLPLLGTPLNVMITPYGEALRLRYYMAALAEISRYPHVQAVGIQTNASFSLM SLLESFRAGGGDISKLRLWCSFHPSQITAERFLQQCLALSAAGITWCAGAVASMKDID QFRWLRQQLPDQNYFWFNANECANTRHTVEETIAFGELDPLYVIETQQWPAQLDICTA GRKSIFMNAEGDLFACHISKIKMGNLYQQRLNSPACQAKQCHCFLAYQHRLDIPLLNH LDASRCFRIGRSCDIV" misc_feature complement(4220018..4220845) /locus_tag="STM4011" /note="STM4011 family radical SAM protein; Region: rSAM_STM4011; NF038073" /db_xref="CDD:468332" regulatory complement(4220010..4220015) /regulatory_class="ribosome_binding_site" /locus_tag="STM4010" /note="putative RBS for STM4010; RegulonDB:STMS1H003941" gene complement(4220869..4222110) /locus_tag="STM4012" /db_xref="GeneID:1255538" CDS complement(4220869..4222110) /locus_tag="STM4012" /note="similar to E. coli O2-independent coproporphyrinogen III oxidase (AAC76864.1); Blastp hit to AAC76864.1 (459 aa), 28% identity in aa 14 - 248, 25% identity in aa 319 - 379" /codon_start=1 /transl_table=11 /product="putative coproporphyrinogen III oxidase and related FeS oxidoreductase" /protein_id="NP_462892.1" /db_xref="GeneID:1255538" /translation="MNNNDIYRQYMYSYPHKTAYRELENVSFSEVKPRIYEHDTHLYV HMPFCQSRCGFCNLFTCTGADNTFIDSYIDAIITQGRQMALAPAHWASFTVGGGTPLL LNIAQLEKLFFSVFDVLNVDWNIYKTIETSPTDTTAEKVALLNAFSVNRVSIGVQSFH DSELHTLHRRHNAASAHQALEWLKAGHFPSLNIDIIYGIPGQTHASLTESLHQALVYQ PEELFLYPLYNMPRQENMHSYYVLARDLLRNAGYTQTSMRRFVLNPAPSAAAESCGFE NSLALGAGGRSYLGNLHYCSPWSSNLQTSRKIIQAFIDSPDKTVINHGYLLPPDEMKR RFIIKNLFFWQGLSLSDYQQYFASDALRDFPDLERFIRQGYCYQNGSRLRLTETGMAL SDCLAPVFVSPEVMLRENRQR" misc_feature complement(4220872..4222107) /locus_tag="STM4012" /note="coproporphyrinogen III oxidase family protein; Region: PRK08208" /db_xref="CDD:181292" regulatory complement(4220871..4220876) /regulatory_class="ribosome_binding_site" /locus_tag="STM4011" /note="putative RBS for STM4011; RegulonDB:STMS1H003942" gene complement(4222112..4222994) /locus_tag="STM4013" /db_xref="GeneID:1255539" CDS complement(4222112..4222987) /locus_tag="STM4013" /codon_start=1 /transl_table=11 /product="putative membrane-associated metal-dependent hydrolase" /protein_id="NP_462893.3" /db_xref="GeneID:1255539" /translation="MYNSMDEVPVSLHASIDTGDGEFDMNALISNNAHILFIVLDSLR YDIALQEQTAGNTPNLNHYGQWTKCEAAGNFTWPSHHAMFSGFMPKPIDDTVNQTMLF FPKDIGLGRKGPKNAFAFDDATWIKSLENKGYQTICIGGVSFFNNRSGMGKVFPSMFK ESYWHPRFACTVKESMDNQIHYIQKIMAERAGSQPVMMYINIDTIHYPNHFYVEGAAP GDTVETHAAALRYIDARIDGLLNIFRQTGGETFVIVCSDHGTCYGEDGKYFHSFNHPI VNTVPYMHFLLSCNH" misc_feature complement(4222127..4222915) /locus_tag="STM4013" /note="STM4013/SEN3800 family hydrolase; Region: fam_STM4013; NF038075" /db_xref="CDD:468334" gene complement(4222980..4224010) /locus_tag="STM4014" /db_xref="GeneID:1255540" CDS complement(4222980..4224005) /locus_tag="STM4014" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462894.3" /db_xref="GeneID:1255540" /translation="MCTFPYSTIKGFIVITLIGPHQSKRTHYFMQAAAVLGEPVTALT HPQALDASLTSGIVKIDPPVHSETDIRKINAIGLDYIHFLQNMAARPGVTWLNHPAGL IHLLDKKRCKRRLLEHGIPTPPLVAEDVKSFAQLTAIMEEKRVASVFIKPSLGSGAAG VIALRRHPDGIKQVLYSAIVISGQQLFNSKKIQQYRQKEDIQLIINGVLQQENLVEQW LPKASVKHKTYDLRIVCLDGEIIWRVVRTSSQPITNLHLQNQAYCFESLELSAAKVTE IDTLCQNAMRLFPGIRLAGIDVLLTTSLTPYIIEINGQGDLIYQDAQQNNLIYQAQIR AMRKQNV" misc_feature complement(4222995..4223963) /locus_tag="STM4014" /note="STM4014 family protein; Region: fam_STM4014; NF038074" /db_xref="CDD:468333" regulatory complement(4222989..4222994) /regulatory_class="ribosome_binding_site" /locus_tag="STM4013" /note="putative RBS for STM4013; RegulonDB:STMS1H003943" regulatory complement(4224005..4224010) /regulatory_class="ribosome_binding_site" /locus_tag="STM4014" /note="putative RBS for STM4014; RegulonDB:STMS1H003944" gene complement(4224018..4224871) /locus_tag="STM4015" /db_xref="GeneID:1255541" CDS complement(4224018..4224866) /locus_tag="STM4015" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462895.1" /db_xref="GeneID:1255541" /translation="MNKRFNIDWDNELTQEQLINLILTDEDLPKLRSLTIGNWGDCWE DETCQPIIDMIVENASRFTHLESLFIGDMESEDCEISWIKQGDYSRLYAALPNLKELI IKGASDLRLGAIHHEKLEHLEIISGGIPSNVLAELQNAQLPALKTLKLFLGVEGYGFD GSLDDVMALASKDLFPQLTHLGLMNSEEQDDIARRVLESNILPQLNVLELSCGTLTDN GAEALLEHKDRIAHLETLDLHHHYLTPEMQEKLKATLPINLNLSEALEPDDYDGDIYM NAMYTE" misc_feature complement(4224021..4224860) /locus_tag="STM4015" /note="STM4015 family protein; Region: fam_STM4015; NF038076" /db_xref="CDD:468335" regulatory complement(4224866..4224871) /regulatory_class="ribosome_binding_site" /locus_tag="STM4015" /note="putative RBS for STM4015; RegulonDB:STMS1H003945" gene complement(4225023..4225726) /gene="yshA" /locus_tag="STM4016" /db_xref="GeneID:1255542" CDS complement(4225023..4225715) /gene="yshA" /locus_tag="STM4016" /note="similar to E. coli orf, hypothetical protein (AAC76872.1); Blastp hit to AAC76872.1 (230 aa), 88% identity in aa 1 - 230" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_462896.1" /db_xref="GeneID:1255542" /translation="MKSLNTLVILTSVISTSVFAGAYVENREAYNLASDQMEFMLRVG YNSDMGAGIMLTNTYTLQRDDELKHGYNEIEGWYPLFKPTDKLTIQPGGLINDKSIGS GGAVYLDVNYKFTPWFNLTVRNRYNHNNYSSTDLNGELDNNDSYEIGNYWNFIITDKF SYTFEPHYFYNVNDFNSSNGTKHHWEITNTFRYRINEHWLPYFELRWLDRNVGPYHRE QNQIRIGAKYFF" misc_feature complement(4225026..4225715) /gene="yshA" /locus_tag="STM4016" /note="porin OmpL; Region: ompL; PRK09980" /db_xref="CDD:182179" regulatory complement(4225721..4225726) /regulatory_class="ribosome_binding_site" /gene="yshA" /locus_tag="STM4016" /note="putative RBS for yshA; RegulonDB:STMS1H003946" gene complement(4225783..4227213) /gene="yihO" /locus_tag="STM4017" /db_xref="GeneID:1255543" CDS complement(4225783..4227204) /gene="yihO" /locus_tag="STM4017" /note="similar to E. coli putative permease (AAC76873.1); Blastp hit to AAC76873.1 (487 aa), 80% identity in aa 3 - 471" /codon_start=1 /transl_table=11 /product="putative GPH family transport protein" /protein_id="NP_462897.1" /db_xref="GeneID:1255543" /translation="MSNHDPLTLKLSLREKCAYGVGDFGSNLMLCIGTLYLLKFYTDE LGMPAYYGGIIFLVAKFFTAFTDMLTGVLLDSRRNIGAKGKFRPFILYASFPVALVAT AQFFATHFTLPVKTAFATVLFMLFGLFYSLMNCSYGAMVPAITKNPHERAQLAAWRQG GATIGLLLCTVGFMPIQALFTRSPSLGYLIAAVIFSVCGLFSMWWCFSGVKERYIETV PDTHKPSILKSFCAIFRNPPLLVLCVANLCTLAAFNIKLAIQVYYTQYVLNDIHLLSW MGFFSMGCILIGVLLVPAAVKRFGKKQVYLGGLILWAVGDILNFIWGGTSFLFVIFSC IAFFGTAFVNSLNWALVPDTVDYGEWKTGIRAEGSVYTGYTFSRKISAALAGFLPGIM LTQIGYIPNIAQSDTTLLGLRQLIFLWPCGLAIIAALTMGFFYKLNEQRFAFIIEEIA QRKKTGNQIVATNNKQSISTVNN" misc_feature complement(4225849..4227159) /gene="yihO" /locus_tag="STM4017" /note="sugar (Glycoside-Pentoside-Hexuronide) transporter; Region: gph; TIGR00792" /db_xref="CDD:273270" regulatory complement(4227208..4227213) /regulatory_class="ribosome_binding_site" /gene="yihO" /locus_tag="STM4017" /note="putative RBS for yihO; RegulonDB:STMS1H003947" gene complement(4227250..4228645) /gene="yihP" /locus_tag="STM4018" /db_xref="GeneID:1255544" CDS complement(4227250..4228632) /gene="yihP" /locus_tag="STM4018" /note="similar to E. coli putative permease (AAC76874.1); Blastp hit to AAC76874.1 (468 aa), 91% identity in aa 12 - 467" /codon_start=1 /transl_table=11 /product="putative GPH family transport protein" /protein_id="NP_462898.1" /db_xref="GeneID:1255544" /translation="MSQTSSNPATLRLPFKEKLAYGLGDLGSNILLDIGTLYLLKFYT DVLGLPGTYGGIIFLIAKFFTAFTDMGTGIMLDSRRKIGPKGKFRPFVLYAAFPVTLL AIANFVGTPFEVTGKTVVATMLFMLYGLVFSMMNCSYGAMVPAITKNPDERASLAAWR QGGATLGLLLCTVGFVPVMNLIEGNAQLSYIFAATLFSLFGLLFMWLCYAGVKERYVE VKPVDSAQKPGLLQSFRAIAGNRPLFILCIANLCTLGAFNVKLAIQVYYTQYVLNDPI LLSWMGFFSMGCIFIGVFLMPGAVRRFGKKKVYIGGLLIWVAGDLLNYFFGGGSVSFV AFSCLAFFGSAFVNSLNWALVSDTVEYGEWRTGVRSEGTVYTGFTFFRKVSQALAGFF PGWMLTQIGYIPNVVQSAGTVEGLRQLIFIYPCVLAVITIIAMGCFYNLNEKMYVRIV EEIEARKHTV" misc_feature complement(4227265..4228581) /gene="yihP" /locus_tag="STM4018" /note="sugar (Glycoside-Pentoside-Hexuronide) transporter; Region: gph; TIGR00792" /db_xref="CDD:273270" regulatory complement(4228640..4228645) /regulatory_class="ribosome_binding_site" /gene="yihP" /locus_tag="STM4018" /note="putative RBS for yihP; RegulonDB:STMS1H003948" gene complement(4228678..4230726) /gene="yihQ" /locus_tag="STM4019" /db_xref="GeneID:1255545" CDS complement(4228678..4230714) /gene="yihQ" /locus_tag="STM4019" /note="similar to E. coli putative glycosidase (AAC76875.1); Blastp hit to AAC76875.1 (678 aa), 88% identity in aa 10 - 678" /codon_start=1 /transl_table=11 /product="putative alpha-xylosidase" /protein_id="NP_462899.1" /db_xref="GeneID:1255545" /translation="MNSLPQRSTDFELTTSQDGFALSWQQRLILRHSTENPCLWIGAG VADIDMFRGNFSIKDKLNEKIALTEATVSELPDGWLVQFSRGATISATLRISADEAGR LQLDLQNDDLHHNRIWLRLAANPDDHIYGCGEQFSYFDLRGKPFPLWTSEQGVGRNKT SYVTWQADCKENAGGDYYWTFFPQPTFVSTQKYYCHVDNSCYMNFDFSAPEYHELALW EDKTTLRFECADTYIALLEKLTALLGRQPELPDWVYDGVTLGIQGGTEVCQQKLDTMR NAGVKVNGIWAQDWSGIRMTSFGKRVMWNWKWNSDNYPQLDSRIKQWKEEGVQFLSYI NPYVASDKDLCAEAAKHGYLAKDATGGDYLVEFGEFYGGVVDLTNPEAYDWFKDVIKK SMIALGCSGWMADFGEYLPTDTYLHNGVSAEIMHNAWPALWAKCNYEALQETGKLGEI LFFMRAGYTGSQKYSTMMWAGDQNVDWSLDDGLASVVPAALSLAMTGHGLHHSDIGGY TTLFDMKRSKELLLRWCDFSAFTPMMRTHEGNRPGDNWQFDGDAETIAHFARMTTVFT TLKPYLKQAVAQNAATGLPVMRPLFLHYENDAATYTLKYQYLLGQDLLVAPVHEQGRC DWTLYLPEDHWVNIWTGEAHHGGEITVDAPIGKPPVFYRAKSEWASLFASLRNI" misc_feature complement(4228681..4230714) /gene="yihQ" /locus_tag="STM4019" /note="alpha-glucosidase; Provisional; Region: PRK10426" /db_xref="CDD:236691" regulatory complement(4230721..4230726) /regulatory_class="ribosome_binding_site" /gene="yihQ" /locus_tag="STM4019" /note="putative RBS for yihQ; RegulonDB:STMS1H003949" gene complement(4230758..4231621) /gene="yihR" /locus_tag="STM4020" /db_xref="GeneID:1255546" CDS complement(4230758..4231615) /gene="yihR" /locus_tag="STM4020" /note="similar to E. coli putative aldose-1-epimerase (AAC76876.1); Blastp hit to AAC76876.1 (308 aa), 54% identity in aa 9 - 303" /codon_start=1 /transl_table=11 /product="putative aldose-1-epimerase" /protein_id="NP_462900.3" /db_xref="GeneID:1255546" /translation="MRMAAMHSGGKTIQLNAGHYQAKIVTVGAGLAELTHHGRHVVIP HKPEEIPMAHLGKVLIPWPNRVTNGCYSYNGKVFQLAVNDPVSQTAIHGLLAWRDWQI NYQSATEASLTIFLPPSYGYPFALISEVIYRLDAASGLHVLIRTQNIGDESAPYGAGA HPYLTCNLQSIDSCVLTLPASEELPAGRDFSASCLLGETRLDHAVKTATTPAEWEVRL TSPTQNMSTFLRSTQPWLQIYTGEKLSRKGLAVEPMSCPPDAFNSGIALIHLAPKAIH QLHFSIGCD" misc_feature complement(4230761..4231615) /gene="yihR" /locus_tag="STM4020" /note="aldose-1-epimerase; Region: PRK15172" /db_xref="CDD:237918" misc_feature complement(order(4230860..4230862,4230899..4230901, 4231010..4231012,4231127..4231129,4231133..4231135, 4231340..4231342,4231421..4231423)) /gene="yihR" /locus_tag="STM4020" /note="active site" /db_xref="CDD:185699" misc_feature complement(order(4230860..4230862,4231133..4231135)) /gene="yihR" /locus_tag="STM4020" /note="catalytic residues [active]" /db_xref="CDD:185699" regulatory complement(4231616..4231621) /regulatory_class="ribosome_binding_site" /gene="yihR" /locus_tag="STM4020" /note="putative RBS for yihR; RegulonDB:STMS1H003950" gene complement(4231619..4232872) /gene="yihS" /locus_tag="STM4021" /db_xref="GeneID:1255547" CDS complement(4231619..4232860) /gene="yihS" /locus_tag="STM4021" /note="similar to E. coli orf, hypothetical protein (AAD13442.1); Blastp hit to AAD13442.1 (418 aa), 92% identity in aa 6 - 418" /codon_start=1 /transl_table=11 /product="putative isomerase" /protein_id="NP_462901.1" /db_xref="GeneID:1255547" /translation="MKWFNTLSHNRWLEQETDRIFNFGKNAVVPTGFGWLGNKGQIKE EMGTHLWITARMLHVYSVAASMGRPGAYDLVDHGIKAMNGALRDKKYGGWYACVNDQG VVDASKQGYQHFFALLGAASAVTTGHPEARKLLDYTIEVIEKYFWSEEEQMCLESWDE AFSQTEDYRGGNANMHAVEAFLIVYDVTHDKKWLDRALRIASVIIHDVARNGDYRVNE HFDSQWNPIRDYNKDNPAHRFRAYGGTPGHWIEWGRLMLHLHAALEARFETPPAWLLE DAKGLFHATIRDAWAPDGADGFVYSVDWDGKPIVRERVRWPIVEAMGTAYALYTLTDD SQYEEWYQKWWDYCIKYLMDYENGSWWQELDADNKVTTKVWDGKQDIYHLLHCLVIPR LPLAPGLAPAVAAGLLDINAK" misc_feature complement(order(4231670..4231672,4231682..4231684, 4232633..4232635,4232669..4232671,4232819..4232821, 4232840..4232842)) /gene="yihS" /locus_tag="STM4021" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238153" misc_feature complement(4231700..4232767) /gene="yihS" /locus_tag="STM4021" /note="N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase); Region: GlcNAc_2-epim; pfam07221" /db_xref="CDD:399891" misc_feature complement(order(4231703..4231705,4231712..4231717, 4231727..4231729,4231901..4231903,4231913..4231918, 4232096..4232101,4232108..4232110,4232117..4232119, 4232324..4232326,4232333..4232338,4232345..4232347, 4232507..4232509,4232516..4232518,4232528..4232530, 4232687..4232689,4232696..4232698,4232708..4232710)) /gene="yihS" /locus_tag="STM4021" /note="putative active cleft [active]" /db_xref="CDD:238153" regulatory complement(4232867..4232872) /regulatory_class="ribosome_binding_site" /gene="yihS" /locus_tag="STM4021" /note="putative RBS for yihS; RegulonDB:STMS1H003951" gene complement(4232876..4233766) /gene="yihT" /locus_tag="STM4022" /db_xref="GeneID:1255548" CDS complement(4232876..4233754) /gene="yihT" /locus_tag="STM4022" /note="similar to E. coli putative aldolase (AAD13443.1); Blastp hit to AAD13443.1 (292 aa), 87% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="putative aldolase" /protein_id="NP_462902.1" /db_xref="GeneID:1255548" /translation="MNNYTIKDITRASGGFAMLAVDQREAMRLMFAAAGAKTPVADSV LTDFKVNAAKILSPYASAVLLDQQFCYRQAVEQNAVAKSCAMIVAADDFIPGNGIPVD NVVLDKKINAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEP VVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHI NMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSSVIGLPDTELMLRDVSAPK LQRLGEIVDEMMAKRR" misc_feature complement(4232981..4233709) /gene="yihT" /locus_tag="STM4022" /note="DeoC/LacD family aldolase; Region: DeoC; pfam01791" /db_xref="CDD:460332" regulatory complement(4233761..4233766) /regulatory_class="ribosome_binding_site" /gene="yihT" /locus_tag="STM4022" /note="putative RBS for yihT; RegulonDB:STMS1H003952" gene complement(4233777..4234685) /gene="yihU" /locus_tag="STM4023" /db_xref="GeneID:1255549" CDS complement(4233777..4234673) /gene="yihU" /locus_tag="STM4023" /note="similar to E. coli putative dehydrogenase (AAD13444.1); Blastp hit to AAD13444.1 (298 aa), 86% identity in aa 1 - 297" /codon_start=1 /transl_table=11 /product="putative oxidoreductase" /protein_id="NP_462903.1" /db_xref="GeneID:1255549" /translation="MAVIAFIGLGQMGSPMASNLLKQGHQLSVFDVNPDAVQRLVDKG AQPASSPAQATIGAEFVITMLPNGDLVRSVLFGEQGVCETLSREALVIDMSTIHPLQT DNLIADMQSKGFSMMDVPIGRTSDNAITGTLLLLAGGTAEQVERATPVLMAMGNELVN TGGPGMGIRVKLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTT TWPNKVMKGDLSPAFMIDLAHKDLGIALDVANQLHVPMPLGAASREVYNLARAAGRGR EDWSAILEQVRISAGLTANVKK" misc_feature complement(4233786..4234673) /gene="yihU" /locus_tag="STM4023" /note="sulfolactaldehyde 3-reductase; Region: PRK15461" /db_xref="CDD:185358" regulatory complement(4234680..4234685) /regulatory_class="ribosome_binding_site" /gene="yihU" /locus_tag="STM4023" /note="putative RBS for yihU; RegulonDB:STMS1H003953" gene 4234827..4235734 /gene="yihV" /locus_tag="STM4024" /db_xref="GeneID:1255550" regulatory 4234827..4234832 /regulatory_class="ribosome_binding_site" /gene="yihV" /locus_tag="STM4024" /note="putative RBS for yihV; RegulonDB:STMS1H003954" CDS 4234838..4235734 /gene="yihV" /locus_tag="STM4024" /note="similar to E. coli putative kinase (AAD13445.1); Blastp hit to AAD13445.1 (300 aa), 85% identity in aa 3 - 300" /codon_start=1 /transl_table=11 /product="putative sugar kinase" /protein_id="NP_462904.3" /db_xref="GeneID:1255550" /translation="MVRIACVGITVMDRIYYVEGLPTEGGKYVAKRYTEVGGGPAATA AVAAAKLGAQVDFIGRVGDDDTGNSLLAELESLGVNTRYTRRYTQAMSSQSAIMVDAK GERIIVNYPSPDLLPDADWLNDIDFSQWDVVLADVRWHDGAKQAFTLARQAGVMTVLD GDITPQDISELVALSDHAAFSEPGLARLTGMSEAIDALKKAQMLTNGHVYVTRGSEGC NWLEKAAVRHQPGFTVEVVDTTGAGDVFHGALAFGLASGYAIEEAVRFASGVAALKCT RPGGRAGIPDCEQTRSFLSLFV" misc_feature 4234844..4235695 /gene="yihV" /locus_tag="STM4024" /note="Ribokinase-like subgroup B. Found in bacteria and plants, this subgroup is part of the ribokinase/pfkB superfamily. Its oligomerization state is unknown at this time; Region: ribokinase_group_B; cd01945" /db_xref="CDD:238920" misc_feature order(4234964..4234966,4235558..4235560,4235567..4235569) /gene="yihV" /locus_tag="STM4024" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238920" misc_feature order(4235378..4235380,4235471..4235473,4235552..4235554, 4235561..4235566,4235573..4235575,4235639..4235641, 4235648..4235650) /gene="yihV" /locus_tag="STM4024" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:238920" gene 4235757..4236571 /gene="yihW" /locus_tag="STM4025" /db_xref="GeneID:1255551" regulatory 4235757..4235762 /regulatory_class="ribosome_binding_site" /gene="yihW" /locus_tag="STM4025" /note="putative RBS for yihW; RegulonDB:STMS1H003955" CDS 4235768..4236571 /gene="yihW" /locus_tag="STM4025" /note="DeoR family; similar to E. coli putative DEOR-type transcriptional regulator (AAD13446.1); Blastp hit to AAD13446.1 (269 aa), 89% identity in aa 9 - 263" /codon_start=1 /transl_table=11 /product="putative glycerol-3-phosphate regulon repressor" /protein_id="NP_462905.1" /db_xref="GeneID:1255551" /translation="MSLTELTGNPRHDRLLMLIDERGYMNIDELASLLEVSTQTVRRD IRKLSEQGLITRHHGGAGRASSVVNTAFEQREVSWTQEKKAIAEAVADYIPDGSTIFI TIGTTVEQVARALLNHNHLRIITNSLRVAHILYNNPRFEVMVPGGTLRPHNSGIIGPS AAAFVAGFRADYLVTSVGAIESDGALLEFDVNEASVVKTMMAHSRHILLAADHTKYHA SAAVEIGNVSQITALFTDEYPGPALQNLLQSQQIEVVQVSPSLDDAVSA" misc_feature 4235792..4236541 /gene="yihW" /locus_tag="STM4025" /note="DNA-binding transcriptional regulator of sugar metabolism, DeoR/GlpR family [Transcription, Carbohydrate transport and metabolism]; Region: GlpR; COG1349" /db_xref="CDD:440960" gene 4236750..4237361 /gene="yihX" /locus_tag="STM4026" /db_xref="GeneID:1255552" regulatory 4236750..4236755 /regulatory_class="ribosome_binding_site" /gene="yihX" /locus_tag="STM4026" /note="putative RBS for yihX; RegulonDB:STMS1H003956" CDS 4236762..4237361 /gene="yihX" /locus_tag="STM4026" /note="similar to E. coli putative phosphatase (AAD13447.1); Blastp hit to AAD13447.1 (206 aa), 89% identity in aa 8 - 206" /codon_start=1 /transl_table=11 /product="putative enzyme" /protein_id="NP_462906.1" /db_xref="GeneID:1255552" /translation="MLYIFDLGNVIVDIDFNRVLGVWSDLSRVPLASLKQKFTMGETF HQHERGEITDEAFAEAFCHEMALSLSYEQFAHGWQAVFVGLRPEVIAIMHKLREQGHR VVVLSNTNRLHTHFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQKEGFSAAD AVFFDDNADNIEGANQLGITSILVKDKATIPDYFAKLLC" misc_feature 4236762..4237358 /gene="yihX" /locus_tag="STM4026" /note="?-D-glucose-1-phosphatase; Provisional; Region: PRK09456" /db_xref="CDD:181872" misc_feature order(4236777..4236791,4237080..4237085,4237182..4237184, 4237254..4237259,4237266..4237271) /gene="yihX" /locus_tag="STM4026" /note="active site" /db_xref="CDD:319790" misc_feature 4237167..4237169 /gene="yihX" /locus_tag="STM4026" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:319790" gene 4237344..4238227 /gene="rbn" /locus_tag="STM4027" /db_xref="GeneID:1255553" regulatory 4237344..4237349 /regulatory_class="ribosome_binding_site" /gene="yihX" /locus_tag="STM4026" /note="putative RBS for rbn; RegulonDB:STMS1H003957" CDS 4237355..4238227 /gene="rbn" /locus_tag="STM4027" /EC_number="3.1.-.-" /note="similar to E. coli tRNA processing exoribonuclease BN (AAD13448.1); Blastp hit to AAD13448.1 (290 aa), 93% identity in aa 1 - 290" /codon_start=1 /transl_table=11 /product="tRNA processing exoribonuclease BN" /protein_id="NP_462907.1" /db_xref="GeneID:1255553" /translation="MLKTVHQKAGRHTRPVRAWLKLLWQRIDEDNMTTLAGNLAYVSL LSLVPLIAVVFALFAAFPMFSDVSIQLRHFIFANFMPATGDVIQRYIEQFVANSNKMT AVGACGLIVTALLLMYAIDSALNTIWRSKRTRPKVYSFAVYWMILTLGPLLAGVSLAI SSYLLSLRWASDLNTVIDNVLHILPLLLSWISFWLLYSIVPTTRVPNRDALVGAFVAA LLFEAGKKGFALYITMFPSYQLIYGVLAVIPILFVWVYWTWCIVLLGAEITVTLGEYR KLKQAAEQEEADQP" misc_feature 4237388..4238224 /gene="rbn" /locus_tag="STM4027" /note="virulence factor BrkB family protein; Region: PRK01637" /db_xref="CDD:179313" gene 4238208..4238661 /gene="yihZ" /locus_tag="STM4028" /db_xref="GeneID:1255554" regulatory 4238208..4238213 /regulatory_class="ribosome_binding_site" /gene="yihZ" /locus_tag="STM4028" /note="putative RBS for yihZ; RegulonDB:STMS1H003959" CDS 4238224..4238661 /gene="yihZ" /locus_tag="STM4028" /note="similar to E. coli orf, hypothetical protein (AAD13449.1); Blastp hit to AAD13449.1 (145 aa), 91% identity in aa 1 - 145" /codon_start=1 /transl_table=11 /product="D-Tyr-tRNA(Tyr) deacylase" /protein_id="NP_462908.1" /db_xref="GeneID:1255554" /translation="MIALIQRVTRASVTVEDEVTGKIGPGLLVLLGVEKEDDEQKANR LCERVLGYRIFSDADGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSGGAAPDRA QALYEYFVERCRQQAINTQTGRFAADMQVELVNDGPVTFWLQV" misc_feature 4238224..4238658 /gene="yihZ" /locus_tag="STM4028" /note="D-aminoacyl-tRNA deacylase [Translation, ribosomal structure and biogenesis]; Region: Dtd; COG1490" /db_xref="CDD:441099" gene 4238646..4239647 /gene="yiiD" /locus_tag="STM4029" /db_xref="GeneID:1255555" regulatory 4238646..4238651 /regulatory_class="ribosome_binding_site" /gene="yihZ" /locus_tag="STM4028" /note="putative RBS for yiiD; RegulonDB:STMS1H003960" CDS 4238658..4239647 /gene="yiiD" /locus_tag="STM4029" /note="similar to E. coli putative acetyltransferase (AAD13450.1); Blastp hit to AAD13450.1 (329 aa), 93% identity in aa 1 - 329" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_462909.1" /db_xref="GeneID:1255555" /translation="MSQLPAWPRITRESTAMYHLRVPQTEEELERYYQFRWEMLRKPL HQPKGSERDGWDALAHHQMVVDEEGNLVAVGRLYINADNEASIRFMAVHPSVQDKGLG TLMAMTLESVARQEGVKRVTCSAREDAVEFFAKLGFVNQGEITTPTTTPIRHFLMIKP VASLDDILHRGDWCGQLQQAWYEHIPLSEKMGVRIQQYTGQKFITTMPETGNQNPHHT VFAGSLFSLATLTGWGLIWLMLRERHLGGTIILADAHIRYSKPISGKPNAVADLGSLS GDLDRLARGKKARVQLQVELLGGETAGAIFEGIYIVLPAKPFGPYEEGGNEEE" misc_feature 4238733..4239143 /gene="yiiD" /locus_tag="STM4029" /note="Predicted N-acyltransferase, GNAT family [General function prediction only]; Region: ElaA; COG2153" /db_xref="CDD:441756" misc_feature 4239177..4239599 /gene="yiiD" /locus_tag="STM4029" /note="Putative thioesterase (yiiD_Cterm); Region: YiiD_C; pfam09500" /db_xref="CDD:430649" gene complement(4239662..4240123) /locus_tag="STM4030" /db_xref="GeneID:1255556" CDS complement(4239662..4240108) /locus_tag="STM4030" /note="similar to E. coli orf, hypothetical protein (AAC76117.1); Blastp hit to AAC76117.1 (138 aa), 45% identity in aa 19 - 138" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462910.3" /db_xref="GeneID:1255556" /translation="MRTHRQMDATSAKKIVDTFSDAVKTVPLMGEDRNDNEYRRALAL VEFLVDHDDLENPLFELLCARISEYEKHAPEFKALNQHLEKTPPGVSVLRTLMDQYGL KAADLANELGSKSNVSNILNGRRALTVNHIKALTQRFKLPADAFIE" misc_feature complement(4239665..4240045) /locus_tag="STM4030" /note="Antitoxin component HigA of the HigAB toxin-antitoxin module, contains an N-terminal HTH domain [Defense mechanisms]; Region: HigA; COG5499" /db_xref="CDD:444250" gene complement(4240105..4240429) /locus_tag="STM4031" /db_xref="GeneID:1255557" CDS complement(4240105..4240416) /locus_tag="STM4031" /note="similar to E. coli orf, hypothetical protein (AAC76118.1); Blastp hit to AAC76118.1 (104 aa), 40% identity in aa 1 - 99" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462911.1" /db_xref="GeneID:1255557" /translation="MHVISRKPFNEAMLMYPNHELALTELLNVLEKKTFTQPEEMKRY IPSLDNFKYRDKWWVIDVSGNSLRLISYIDFRLHKIFVKHIVSHAEYDKLTAYYRGNK E" misc_feature complement(4240141..4240413) /locus_tag="STM4031" /note="mRNA-degrading endonuclease (mRNA interferase) HigB, toxic component of the HigAB toxin-antitoxin module [Translation, ribosomal structure and biogenesis, Defense mechanisms]; Region: HigB; COG4680" /db_xref="CDD:443716" regulatory complement(4240118..4240123) /regulatory_class="ribosome_binding_site" /locus_tag="STM4031" /note="putative RBS for STM4030; RegulonDB:STMS1H003961" regulatory complement(4240424..4240429) /regulatory_class="ribosome_binding_site" /locus_tag="STM4031" /note="putative RBS for STM4031; RegulonDB:STMS1H003962" gene complement(4240502..4241438) /locus_tag="STM4032" /db_xref="GeneID:1255558" CDS complement(4240502..4241431) /locus_tag="STM4032" /note="similar to E. coli putative lipase (AAC73578.1); Blastp hit to AAC73578.1 (319 aa), 32% identity in aa 84 - 312" /codon_start=1 /transl_table=11 /product="putative acetyl esterase" /protein_id="NP_462912.1" /db_xref="GeneID:1255558" /translation="MPLEKGIAELVAGFIAAGRPSSREQNIDDRRAGYIASTTLAGET ETRVQVEDIELDAMTFRVVSPLNATGKLPCIIYYHGGCFVSGGFATHDNQLRQLAFYS RCRVIAAQYRLAPDHTFPAAHNDAETGANTIWKYAQKLGIDRENITLAGDSAGGHLAL VTALRLKAARQWQPAQLILIYPMLDATARFASYTCNGLDYIITRDTLLSGYEMYMPRT DPLHPEASPLWREDFAGLPSTHIITAEFDPLRDEGEALYQRFQEQGVECTCQRYLGVI HGFFQLGGVSQAARSAMRDVAWRVVSPSTGKMT" misc_feature complement(4240592..4241209) /locus_tag="STM4032" /note="alpha/beta hydrolase fold; Region: Abhydrolase_3; pfam07859" /db_xref="CDD:400284" regulatory complement(4241433..4241438) /regulatory_class="ribosome_binding_site" /locus_tag="STM4032" /note="putative RBS for STM4032; RegulonDB:STMS1H003963" gene 4241997..4242251 /locus_tag="STM4033" /db_xref="GeneID:1255559" CDS 4241997..4242251 /locus_tag="STM4033" /codon_start=1 /transl_table=11 /product="putative merR family bacterial regulatory protein" /protein_id="NP_462913.3" /db_xref="GeneID:1255559" /translation="MSQMNEIIEGTREPSRTFHIDAMKIKEIRQASGLSQSKFAELIS VNVDTLRNWEQGRRSPTGPAKALLRAIANDPRNVIQALRY" misc_feature 4242054..4242224 /locus_tag="STM4033" /note="DNA-binding transcriptional regulator YiaG, XRE-type HTH domain [Transcription]; Region: YiaG; COG2944" /db_xref="CDD:442187" gene complement(4242298..4243244) /gene="fdhE" /locus_tag="STM4034" /db_xref="GeneID:1255560" CDS complement(4242298..4243227) /gene="fdhE" /locus_tag="STM4034" /note="Mn_fn; similar to E. coli affects formate dehydrogenase-N (AAD13453.1); Blastp hit to AAD13453.1 (309 aa), 93% identity in aa 1 - 309" /codon_start=1 /transl_table=11 /product="putative formate dehydrogenase formation protein" /protein_id="NP_462914.1" /db_xref="GeneID:1255560" /translation="MSIRIIPQDELGSSEKRTADMIPPLLFPRLKNVYNRRAERLREL AENNPLGDYLRFAALIAHAQEVVLYDHPLEMDLTARIKEANDQGKPPLDIHVLPRDKH WQKLLHSLIAELKPEMSGPALAVIENLEKASEQELEQMASALFASDFASVSSDKAPFI WAALSLYWAQMASLIPGKARAEYGEARQYCPVCGSMPVSSMVQIGTTQGLRYLHCNLC ETEWHVVRVKCSNCEQSRDLHYWSLENEQAAVKAESCGDCGTYLKILYQEKDPKVEAV ADDLASLVLDARMEQEGFARSSINPFLFPGEGE" misc_feature complement(4242301..4243227) /gene="fdhE" /locus_tag="STM4034" /note="formate dehydrogenase accessory protein FdhE; Provisional; Region: PRK03564" /db_xref="CDD:179595" gene complement(4243224..4243870) /gene="fdoI" /locus_tag="STM4035" /db_xref="GeneID:1255561" CDS complement(4243224..4243859) /gene="fdoI" /locus_tag="STM4035" /EC_number="1.17.1.9" /note="similar to E. coli formate dehydrogenase, cytochrome B556 (FDO) subunit (AAD13454.1); Blastp hit to AAD13454.1 (211 aa), 96% identity in aa 1 - 211" /codon_start=1 /transl_table=11 /product="formate dehydrogenase, cytochrome B556 (FDO) subunit" /protein_id="NP_462915.1" /db_xref="GeneID:1255561" /translation="MKRRDTIVRYTAPERINHWIVAFCFVLAAVSGLGFLFPSFNWLM HILGTPQLARILHPFVGVVMFASFIIMFFRYWHHNLINRDDIFWAKNIRKIVVNEEVG DTGRYNFGQKCVFWAAIIFLVLLLVSGVIIWRPYFAPAFSIPVIRFALMLHSFAAVAL IVVIMVHIYAALWVKGTITAMVEGWVTRSWAKKHHPRWYREVRKTTEKETE" misc_feature complement(4243227..4243859) /gene="fdoI" /locus_tag="STM4035" /note="formate dehydrogenase cytochrome b556 subunit; Region: PRK10639" /db_xref="CDD:182608" regulatory complement(4243239..4243244) /regulatory_class="ribosome_binding_site" /gene="fdoI" /locus_tag="STM4035" /note="putative RBS for fdhE; RegulonDB:STMS1H003964" gene complement(4243856..4244771) /gene="fdoH" /locus_tag="STM4036" /db_xref="GeneID:1255562" CDS complement(4243856..4244758) /gene="fdoH" /locus_tag="STM4036" /EC_number="1.2.1.21" /note="similar to E. coli formate dehydrogenase-O, iron-sulfur subunit (AAD13455.1); Blastp hit to AAD13455.1 (300 aa), 93% identity in aa 1 - 300" /codon_start=1 /transl_table=11 /product="formate dehydrogenase-O, Fe-S subunit" /protein_id="NP_462916.1" /db_xref="GeneID:1255562" /translation="MAYQSQDIIRRSATNGFTPAPQARDHQEEVAKLIDVTTCIGCKA CQVACSEWNDIRDEVGNNVGVYDNPADLTAKSWTVMRFSEVEQNDKLEWLIRKDGCMH CADPGCLKACPAEGAIIQYANGIVDFQSEQCIGCGYCIAGCPFNVPRLNPEDNRVYKC TLCVDRVTVGQEPACVKTCPTGAIHFGSKEDMKTLAGERVAELKTRGYDNAGLYDPAG VGGTHVMYVLHHADKPNLYHGLPENPEISETVKFWKGVWKPLAAFGFAATFAASVFHY VGVGPNRAEEEDDNLHEEKDEVRK" misc_feature complement(4243892..4244740) /gene="fdoH" /locus_tag="STM4036" /note="formate dehydrogenase, beta subunit, Fe-S containing; Region: FDH-beta; TIGR01582" /db_xref="CDD:273705" regulatory complement(4243865..4243870) /regulatory_class="ribosome_binding_site" /gene="fdoI" /locus_tag="STM4035" /note="putative RBS for fdoI; RegulonDB:STMS1H003965" regulatory complement(4244766..4244771) /regulatory_class="ribosome_binding_site" /gene="fdoH" /locus_tag="STM4036" /note="putative RBS for fdoH; RegulonDB:STMS1H003966" gene complement(4244771..4247833) /gene="fdoG" /locus_tag="STM4037" /db_xref="GeneID:1255563" CDS complement(4244771..4247821) /gene="fdoG" /locus_tag="STM4037" /EC_number="1.17.1.9" /note="similar to E. coli formate dehydrogenase-O, major subunit (AAD13456.1); Blastp hit to AAD13456.1 (1016 aa), 93% identity in aa 1 - 1016" /codon_start=1 /transl_except=(pos:complement(4247234..4247236),aa:Sec) /transl_table=11 /product="formate dehydrogenase" /protein_id="NP_462917.1" /db_xref="GeneID:1255563" /translation="MQVSRRQFFKICAGGMAGTTAAALGFAPGVALAETRQYKLLRTR ETRNTCTYCSVGCGLLMYSLGDGAKNAKASIFHIEGDPDHPVSRGALCPKGAGLVDFI HSESRLKFPQYRAPGSDKWQQISWEEAFDRIAKLMKEDRDANYQAQNAEGVTVNRWLT TGMLCASASSNETGYLTQKFSRALGMLAVDNQARVUHGPTVASLAPTFGRGAMTNHWV DIKNANLVVVMGGNAAEAHPVGFRWAMEAKIHNGAKLIVIDPRFTRTASVADFYAPIR SGTDIAFLSGVMLYLLTNEKYNREYTEAYTNASLIVREDFGFDDGLFTGYDADKRQYD KTSWHYELDENGFAKHDTTLQHPRCVWNLLKQHVSRYTPDMVENICGTPKADFLKVCE YIAETSAKDKTASFLYALGWTQHSIGAQNIRTMAMIQLLLGNMGMAGGGVNALRGHSN IQGLTDLGLLSQSLPGYLTLPSEKQTDLQTYLAANTPKPLLKDQVNYWGNYPKFFVSM MKAFFGDKATAENSWGFDWLPKWDKGYDVLQYFEMMKQGKVNGYICQGFNPVASFPNK NKVVASLSKLKYLVTIDPLNTETSTFWQNHGESNDVDPAKIQTEVFRLPSTCFAEENG SIVNSGRWLQWHWKGADAPGIAMTDGEILAGIFLRLRKMYSEQGGANPEQVLNMTWNY TKPYEPASEEVAMESNGKALADLIDPATGAVVVKKGQQLSSFAQLRDDGTTSSGCWIF AGSWTPEGNMMARRDNADPSGLGNTLGWAWAWPLNRRILYNRASADPQGNPWDPKRQL LKWEGGKWAGWDIPDYSAAAPGSDVGPFIMQPEGMGRLFAIDKMAEGPFPEHYEPFET PLGTNPLHPNVISNPAARIFKDDADALGKADKFPYVGTTYRLTEHFHYWTKHALLNAI AQPEQFVEIGEKLANKLGIAHGDTVKVSSNRGYIKAKAVVTKRIRTLKADGKDIDTIG IPIHWGYEGVAKKGFIANTLTPFVGDANTQTPEFKSFLVNVEKV" misc_feature complement(4244777..4247818) /gene="fdoG" /locus_tag="STM4037" /note="Molybdopterin-Binding (MopB) domain of the MopB superfamily of proteins, a large, diverse, heterogeneous superfamily of enzymes that, in general, bind molybdopterin as a cofactor. The MopB domain is found in a wide variety of molybdenum- and...; Region: Molybdopterin-Binding; cl09928" /db_xref="CDD:447860" misc_feature complement(order(4247105..4247110,4247546..4247548, 4247651..4247653,4247663..4247668,4247672..4247674)) /gene="fdoG" /locus_tag="STM4037" /note="[4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:239153" misc_feature complement(order(4245875..4245877,4245971..4245973, 4246061..4246063,4246070..4246078,4246136..4246138, 4246148..4246156,4246478..4246483,4246577..4246582, 4246589..4246597,4246982..4246984,4246988..4246990, 4247039..4247047,4247114..4247119,4247126..4247128, 4247132..4247134,4247234..4247236,4247246..4247248, 4247540..4247542)) /gene="fdoG" /locus_tag="STM4037" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:239153" regulatory complement(4247828..4247833) /regulatory_class="ribosome_binding_site" /gene="fdoG" /locus_tag="STM4037" /note="putative RBS for fdoG; RegulonDB:STMS1H003967" gene 4248002..4248852 /gene="fdhD" /locus_tag="STM4038" /db_xref="GeneID:1255564" regulatory 4248002..4248007 /regulatory_class="ribosome_binding_site" /gene="fdhD" /locus_tag="STM4038" /note="putative RBS for fdhD; RegulonDB:STMS1H003968" CDS 4248016..4248852 /gene="fdhD" /locus_tag="STM4038" /note="similar to E. coli affects formate dehydrogenase-N (AAC76877.1); Blastp hit to AAC76877.1 (277 aa), 85% identity in aa 7 - 275" /codon_start=1 /transl_table=11 /product="putative formate dehydrogenase formation protein" /protein_id="NP_462918.1" /db_xref="GeneID:1255564" /translation="MNNILSEEVLNVTDFTTSRQLTLWKREDLQSPQLDDVAEEVPVA LVYNGISHVVMMASPKDLTHFAMGFSLSEGIIDSPREIYGMDVVPSCNGLEVQIDLSS RRFMGLKARRRALAGRTGCGVCGVEQLNDIGKPVQPLPFSQTFNLGNLDRALKHLNDF QPTGKLTGCTHAAAWVMPSGELAGGHEDVGRHVALDKLLGRRATEGEEWRQGAALVSS RASYEMVQKSAMCGVEILFAVSAATTLAVEVAERCNLTLVGFCKPGRATIYTHPQRLI AD" misc_feature 4248049..4248837 /gene="fdhD" /locus_tag="STM4038" /note="formate dehydrogenase accessory sulfurtransferase FdhD; Region: PRK00724" /db_xref="CDD:234823" gene complement(4249120..4250156) /locus_tag="STM4039" /db_xref="GeneID:1255565" CDS complement(4249120..4250151) /locus_tag="STM4039" /note="similar to E. coli orf, hypothetical protein (AAC76878.1); Blastp hit to AAC76878.1 (351 aa), 36% identity in aa 45 - 348, 44% identity in aa 1 - 56" /codon_start=1 /transl_table=11 /product="putative inner membrane lipoprotein" /protein_id="NP_462919.1" /db_xref="GeneID:1255565" /translation="MKKDLLSSIIIAMLMTAGLSACDEKKADEQPVAQSADSSASNTQ PTSAESADANDVLNQKLNVYIDCYNNLQADIYRAVNRYANTFDDFRTGPTGKEDDPSP LVPVYPAFIQDCRKDIKAAAELKPAFASLDSAALAFINAAGPLAETINSMNKYYDQDN FKDDAFAGAKAFHKTFIKQFDEFDPIAKKYIAEITIMSGQHAANEIKATEKKEGKSIK YYTLLTMQEAETLNDAVADDSFDVAAVSKQLADFEEHTQKLNEKINVDIDKHRSFPGF ISELEKFQGKVKKRIRRVRDNVAYTSHEQDYLNSGSGDMVDGSYEAVVKAYNELIDTY NGYHLEREF" misc_feature complement(4249147..4249989) /locus_tag="STM4039" /note="Protein of unknown function (DUF3829); Region: DUF3829; pfam12889" /db_xref="CDD:432856" regulatory complement(4250151..4250156) /regulatory_class="ribosome_binding_site" /locus_tag="STM4039" /note="putative RBS for STM4039; RegulonDB:STMS1H003969" gene 4250376..4251434 /gene="yiiG" /locus_tag="STM4040" /db_xref="GeneID:1255566" CDS 4250376..4251434 /gene="yiiG" /locus_tag="STM4040" /note="similar to E. coli orf, hypothetical protein (AAC76878.1); Blastp hit to AAC76878.1 (351 aa), 67% identity in aa 15 - 351" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462920.3" /db_xref="GeneID:1255566" /translation="MTLGATGCDDNNVKTEATPAASSQPATPAPSQTPETQSGESPAQ PSAAKPETATQPPVAKPETPAQPEVDAEEVYSEKMDVYIDCFNKLQLPVQHSLARYAD WVKDFKKGPTGKESLVYGIYGITESYITNCQKEMKQVAALTPLLEPIDGVAVSYIDSA AALGNTINEMEKYYTQENYKDDAFAKGKALHQTLLKNIEDFKPVSEKYHEAIQEINDR RQLTQLKRIEEAEGKTFNYYSLAVMISAKQINKVISADTFDAEAMMKKVAELETMIAQ LKEVNTDGRNSSFISSAADYQLQAKKYIRRIRDNVEYSDFEKKRVQDPATGWMVADSY PASLRSYNEMVDDYNRLR" misc_feature <4250430..>4250597 /gene="yiiG" /locus_tag="STM4040" /note="pneumococcal surface protein PspC, LPXTG-anchored form; Region: PspC_subgroup_2; NF033839" /db_xref="CDD:468202" misc_feature 4250592..4251425 /gene="yiiG" /locus_tag="STM4040" /note="Protein of unknown function (DUF3829); Region: DUF3829; pfam12889" /db_xref="CDD:432856" gene complement(4251789..4252119) /locus_tag="STM4041" /db_xref="GeneID:1255567" CDS complement(4251789..4252112) /locus_tag="STM4041" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462921.1" /db_xref="GeneID:1255567" /translation="MGNMTLFIIGIALLSAGTYLMRLGGAKLGSRLALSERSQALLSD AATVLLFSVALATTFYEGEHFAGMARVLGVGFAVFLAWRKMPLIVVIIAAAVVTALLR LAGIN" misc_feature complement(4251807..4252091) /locus_tag="STM4041" /note="Branched-chain amino acid transport protein (AzlD); Region: AzlD; pfam05437" /db_xref="CDD:461652" gene complement(4252112..4252777) /locus_tag="STM4042" /db_xref="GeneID:1255568" CDS complement(4252112..4252771) /locus_tag="STM4042" /note="similar to E. coli orf, hypothetical protein (AAC74516.1); Blastp hit to AAC74516.1 (178 aa), 25% identity in aa 8 - 160" /codon_start=1 /transl_table=11 /product="putative branched-chain amino acid permease" /protein_id="NP_462922.1" /db_xref="GeneID:1255568" /translation="MKHYFSCLKGDTIKAIFLVCLAVGVVGMSYGSLAMAYGFPLWVP FVLSIFVLAGASEFMFIGIVASGGNPLAAAAAGLLVNARHVPFGVTVRDLVGTRAASF FGCHIMNDESVVFGLSQKTPEQRKAAYWLCGLGVALFWPIGTLIGAGVGKLLPAPETI GLDAVFPAILLALVIPAFKNRTTLIRGCSGAALSLAAVPFVAAGLPVLLSLLGLLARK K" misc_feature complement(4252160..4252735) /locus_tag="STM4042" /note="Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]; Region: AzlC; COG1296" /db_xref="CDD:440907" regulatory complement(4252114..4252119) /regulatory_class="ribosome_binding_site" /locus_tag="STM4041" /note="putative RBS for STM4041; RegulonDB:STMS1H003970" regulatory complement(4252772..4252777) /regulatory_class="ribosome_binding_site" /locus_tag="STM4042" /note="putative RBS for STM4042; RegulonDB:STMS1H003971" gene 4252854..4253420 /locus_tag="STM4042A" /db_xref="GeneID:1255569" CDS 4252854..4253420 /locus_tag="STM4042A" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_462923.1" /db_xref="GeneID:1255569" /translation="MNVGCFMTQPISVIARSLVRERQRTGLSLAEIARRAGIAKSTLS QLEAGNGNPSLETLWSLCVALDIPFARLLEPQVQKTQVIRRGEGTKVVAEQAHYQAIL LAACPPGARRDIYLLLTQPGADRISHPHPPGSVEHIIVTQGKALVGLTEAPEELAEGD YICYPGDQAHIFKALEPDTQAILVAEQN" misc_feature 4252872..4253081 /locus_tag="STM4042A" /note="Transcriptional regulator, contains XRE-family HTH domain [Transcription]; Region: HipB; COG1396" /db_xref="CDD:441006" misc_feature 4253172..4253405 /locus_tag="STM4042A" /note="Cupin domain protein related to quercetin dioxygenase [General function prediction only]; Region: QdoI; COG1917" /db_xref="CDD:441521" gene complement(4253509..4253834) /gene="yiiL" /locus_tag="STM4043" /db_xref="GeneID:1255570" CDS complement(4253509..4253823) /gene="yiiL" /locus_tag="STM4043" /note="similar to E. coli orf, hypothetical protein (AAC76883.1); Blastp hit to AAC76883.1 (104 aa), 91% identity in aa 1 - 103" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462924.1" /db_xref="GeneID:1255570" /translation="MIRKAFVMQVNADAHEEYQRRHNPIWPELEAVLKSHGAHHYAIY LDQERNLLFATVEIESEERWNAVASTDVCQRWWKHMRDVMPANPDNSPVSAELKEVFY LQ" misc_feature complement(4253515..4253817) /gene="yiiL" /locus_tag="STM4043" /note="L-rhamnose mutarotase; Region: YiiL_rotase; TIGR02625" /db_xref="CDD:131674" gene complement(4253820..4254981) /locus_tag="STM4044" /db_xref="GeneID:1255571" CDS complement(4253820..4254968) /locus_tag="STM4044" /EC_number="1.1.1.1" /note="similar to E. coli putative oxidoreductase (AAC76613.1); Blastp hit to AAC76613.1 (382 aa), 47% identity in aa 8 - 379" /codon_start=1 /transl_table=11 /product="putative iron-containing alcohol dehydrogenase" /protein_id="NP_462925.1" /db_xref="GeneID:1255571" /translation="MSFMLALPKISLHGAGAIADMVNLVANKQWGKALIVTDGQLVKL GLLDSLFSALDEHQMSYHLFDEVFPNPTEELVQKGFAAYQSAECDYIIAFGGGSPIDT AKAVKILTANPGPSTAYSGVGKVKNAGVPLVAINTTAGTAAEMTSNAVIIDSARKVKE VIIDPNIIPDIAVDDASVMLEIPASVTAATGMDALTHAVEAYVSVGAHPLTDANALEA IRLINLWLPKAVDDGHNLEAREQMAFGQYLAGMAFNSAGLGLVHALAHQPGATHNLPH GVCNAILLPIVENFNRPNAVARFARIAQAMGVETRGMSDEAASQEAINAIRTLSKRVG IPEGFSKLGVTKEDIEGWLDKALADPCAPCNPRTASRDEVRGLYLEAL" misc_feature complement(4253835..4254965) /locus_tag="STM4044" /note="Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH); Region: DHQ_Fe-ADH; cl02872" /db_xref="CDD:445950" misc_feature complement(order(4254141..4254143,4254171..4254173, 4254183..4254185,4254378..4254380,4254390..4254392, 4254411..4254413,4254435..4254437,4254489..4254494, 4254549..4254551,4254555..4254560,4254657..4254659, 4254666..4254668,4254675..4254683,4254855..4254857)) /locus_tag="STM4044" /note="putative active site [active]" /db_xref="CDD:341467" misc_feature complement(order(4254129..4254131,4254141..4254143, 4254183..4254185,4254378..4254380,4254390..4254392)) /locus_tag="STM4044" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:341467" regulatory complement(4253829..4253834) /regulatory_class="ribosome_binding_site" /gene="yiiL" /locus_tag="STM4043" /note="putative RBS for yiiL; RegulonDB:STMS1H003972" regulatory complement(4254976..4254981) /regulatory_class="ribosome_binding_site" /locus_tag="STM4044" /note="putative RBS for STM4044; RegulonDB:STMS1H003973" gene complement(4255095..4255936) /gene="rhaD" /locus_tag="STM4045" /db_xref="GeneID:1255572" CDS complement(4255095..4255922) /gene="rhaD" /locus_tag="STM4045" /EC_number="4.1.2.19" /note="similar to E. coli rhamnulose-phosphate aldolase (AAC76884.1); Blastp hit to AAC76884.1 (274 aa), 91% identity in aa 1 - 274" /codon_start=1 /transl_table=11 /product="rhamnulose-1-phosphate aldolase" /protein_id="NP_462926.1" /db_xref="GeneID:1255572" /translation="MQNITDSWFVQGMIKATSDAWLKGWDERNGGNLTLRLDEADIAP FAANFHEKPRYIALSQPMPLLANTPFIVTGSGKFFRNVQLDPAANLGVVKIDSDGAGY HILWGLTHDAVPTSELPAHFLSHCERIKATHGKDRVIMHCHATNLIALTYVLENNTAL ITRKLWEGSTECLVVFPDGVGILPWMVPGTDEIGQATAQEMQKHSLVLWPFHGVFGSG PTLDETFGLIDTAEKSAEVLVKIYSMGGMKQTITREELVALGKRFGVTPLASAVALY" misc_feature complement(4255101..4255922) /gene="rhaD" /locus_tag="STM4045" /note="rhamnulose-1-phosphate aldolase; Provisional; Region: PRK03634" /db_xref="CDD:179615" misc_feature complement(order(4255143..4255145,4255203..4255205, 4255224..4255226,4255236..4255238,4255257..4255259, 4255290..4255292,4255368..4255370,4255410..4255415, 4255419..4255421,4255464..4255472,4255485..4255490, 4255494..4255496,4255680..4255685,4255689..4255691, 4255842..4255844,4255866..4255868,4255878..4255880)) /gene="rhaD" /locus_tag="STM4045" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238232" misc_feature complement(order(4255287..4255289,4255494..4255496, 4255500..4255502,4255572..4255580,4255695..4255700, 4255827..4255829)) /gene="rhaD" /locus_tag="STM4045" /note="active site" /db_xref="CDD:238232" misc_feature complement(order(4255287..4255289,4255494..4255496, 4255500..4255502)) /gene="rhaD" /locus_tag="STM4045" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238232" regulatory complement(4255931..4255936) /regulatory_class="ribosome_binding_site" /gene="rhaD" /locus_tag="STM4045" /note="putative RBS for rhaD; RegulonDB:STMS1H003974" gene complement(4256065..4257338) /gene="rhaA" /locus_tag="STM4046" /db_xref="GeneID:1255573" CDS complement(4256065..4257324) /gene="rhaA" /locus_tag="STM4046" /EC_number="5.3.1.14" /note="L-rhamnose isomerase. (SW:RHAA_SALTY)" /codon_start=1 /transl_table=11 /product="L-rhamnose isomerase" /protein_id="NP_462927.1" /db_xref="GeneID:1255573" /translation="MTTQLEQAWELAKQRFAAVGIDVEEALRQLDRLPVSMHCWQGDD VAGFENPEGSLTGGIQSTGNYPGKARNATELRADLEQALRLIPGPKRLNLHAIYLESD TPVARDQIKPEHFKNWVEWAKANRLGLDFNPTCFSHPLSADGFTLSHPDAKIRQFWID HCKASRRVSAYFGEQLGTPSVMNIWIPDGMKDITVDRLAPRQRLLEALDEVISEKFDP AHHIDAVESKLFGIGAESYTVGSNEFYMGYATSRQTALCLDAGHFHPTEVISDKISAA MLYVPRLLLHVSRPVRWDSDHVVLLDDETQAIASEIVRHNLFDRVHIGLDFFDASINR VAAWVIGTRNMKKALLRALLEPTDQLRQLEASGDYTARLALLEEQKSLPWQAVWEMYC QRHDTPAGSQWLDSVRVYEKEILSKRS" misc_feature complement(4256068..4257324) /gene="rhaA" /locus_tag="STM4046" /note="L-rhamnose isomerase; Provisional; Region: PRK01076" /db_xref="CDD:179217" gene complement(4257321..4258934) /gene="rhaB" /locus_tag="STM4047" /db_xref="GeneID:1255574" CDS complement(4257321..4258790) /gene="rhaB" /locus_tag="STM4047" /EC_number="2.7.1.5" /note="rhamnulokinase. (SW:RHAB_SALTY)" /codon_start=1 /transl_table=11 /product="rhamnulokinase" /protein_id="NP_462928.1" /db_xref="GeneID:1255574" /translation="MTFRHCVAVDLGASSGRVMLARYDSKHRTLTLREIHRFVNCLQK TDGFDTWDIDSLEKDIRLGLKKVCNEGILIDSIGIDTWGVDYVLLDKQGQRVGLPVSY RDNRTTGIMPQALVQIGKSEIYRRSGIQFLPFNTIYQLRALTKQQPELTAQVAHALLM PDYFSYRLTGEMNWEYTNATTTQLVNINTDDWDDTLLAWTGAKKSWFGRPSHPGNVIG DWICPQGNRIPVVAVASHDTASAVIASPLANKHSAYLSSGTWSLMGFESKMPYTTDEA LAANITNEGGAEGRYRVLKNIMGLWLLQRVLKERRITDLPALIAQTEALPACRFLINP NDDRFINPDDMRAEIQAACRETDQPVPVSDAELARCIFDSLALLYADILHEQANLRGE KFTQLHIVGGGCQNSLLNQLCADACGIRVMAGPVEASTLGNIGIQLMTLDELNNVDDF RQVVSANYDLTTYIPNPDSEIARHVAQFQPKRQTKELCA" misc_feature complement(4257324..4258736) /gene="rhaB" /locus_tag="STM4047" /note="rhamnulokinase; Provisional; Region: rhaB; PRK10640" /db_xref="CDD:182609" regulatory complement(4257333..4257338) /regulatory_class="ribosome_binding_site" /gene="rhaA" /locus_tag="STM4046" /note="putative RBS for rhaA; RegulonDB:STMS1H003975" protein_bind 4258657..4258677 /note="putative binding site for RhaR, RegulonDB: STMS1H000360" /bound_moiety="RhaR" protein_bind complement(4258757..4258775) /gene="rhaB" /locus_tag="STM4047" /note="putative binding site for RhaS, RegulonDB: STMS1H000362" /bound_moiety="RhaS" regulatory complement(4258797..4258802) /regulatory_class="ribosome_binding_site" /gene="rhaB" /locus_tag="STM4047" /note="putative RBS for rhaB; RegulonDB:STMS1H003976" protein_bind complement(4258899..4258914) /gene="rhaB" /locus_tag="STM4047" /note="putative binding site for CRP, RegulonDB: STMS1H000068" /bound_moiety="CRP" regulatory complement(4258907..4258915) /regulatory_class="minus_10_signal" /gene="rhaB" /locus_tag="STM4047" /note="putative -10_signal for rhaB; RegulonDB:STMLTH004640" regulatory complement(4258926..4258934) /regulatory_class="minus_35_signal" /gene="rhaB" /locus_tag="STM4047" /note="putative -35_signal for rhaB; RegulonDB:STMLTH004640" protein_bind 4258967..4258987 /note="putative binding site for RhaR, RegulonDB: STMS1H000358" /bound_moiety="RhaR" protein_bind 4258999..4259019 /note="putative binding site for RhaR, RegulonDB: STMS1H000359" /bound_moiety="RhaR" gene 4259012..4259914 /gene="rhaS" /locus_tag="STM4048" /db_xref="GeneID:1255575" regulatory 4259012..4259020 /regulatory_class="minus_35_signal" /gene="rhaS" /locus_tag="STM4048" /note="putative -35_signal for rhaS; RegulonDB:STMLTH004641" regulatory 4259039..4259047 /regulatory_class="minus_10_signal" /gene="rhaS" /locus_tag="STM4048" /note="putative -10_signal for rhaS; RegulonDB:STMLTH004641" regulatory 4259063..4259068 /regulatory_class="ribosome_binding_site" /gene="rhaS" /locus_tag="STM4048" /note="putative RBS for rhaS; RegulonDB:STMS1H003977" CDS 4259078..4259914 /gene="rhaS" /locus_tag="STM4048" /note="AraC/XylS family; L-rhamnose operon regulatory protein RHAS. (SW:RHAS_SALTY)" /codon_start=1 /transl_table=11 /product="positive regulator for rhaBAD operon" /protein_id="NP_462929.1" /db_xref="GeneID:1255575" /translation="MTVLHSVDFFPSGKAPVAIEPRLPQAAFPEHHHDFHEIVIVEHG TGIHVFNGQPYTISGGTVCFVRDHDRHLYEHTDNLCLTNVLWRSPDAFQFLAGLDQLL PQEQDGYYPSHWRVNQSVLQQVRQLVGLMERAGDGMDAPAVANREILFMQLLVLLRRS SLMEGATNNDAKLNQLMAWLEDHFAEEVCWEAVAEQFSLSLRTLHRQLKQHTGLTPQR YLNRLRLIKARHLLRHSDHSVTEIAYRCGFGDSNHFSTLFRREFNWSPRDIRQGRDAI IQ" misc_feature 4259078..4259911 /gene="rhaS" /locus_tag="STM4048" /note="HTH-type transcriptional activator RhaS; Region: PRK13503" /db_xref="CDD:184094" protein_bind complement(4259091..4259109) /note="putative binding site for RhaS, RegulonDB: STMS1H000363" /bound_moiety="RhaS" gene 4260056..4260915 /gene="rhaR" /locus_tag="STM4049" /db_xref="GeneID:1255576" regulatory 4260056..4260061 /regulatory_class="ribosome_binding_site" /gene="rhaR" /locus_tag="STM4049" /note="putative RBS for rhaR; RegulonDB:STMS1H003978" CDS 4260067..4260915 /gene="rhaR" /locus_tag="STM4049" /note="AraC/XylS family; L-rhamnose operon transcriptional activator RHAR. (SW:RHAR_SALTY)" /codon_start=1 /transl_table=11 /product="positive regulator for rhaRS operon" /protein_id="NP_462930.1" /db_xref="GeneID:1255576" /translation="MANQLILLKKDFFTDEQQAVTVADRYPQDVFAEHTHEFCELVMV WRGNGLHVLNERPYRITRGDLFYIRAEDKHSYTSVNDLVLQNIIYCPERLKLNVNWQA MIPGFQGAQWHPHWRLGSMGMNQARQVINQLEHESNGRDPLANEMAELLFGQLVMTLK RHRYATDDLPATSRETLLDKLITALANSLECPFALDAFCQQEQCSERVLRQQFRAQTG MTINQYLRQVRICHAQYLLQHSPLMISEISMQCGFEDSNYFSVVFTRETGMTPSQWRH LSNQSD" misc_feature 4260067..4260912 /gene="rhaR" /locus_tag="STM4049" /note="HTH-type transcriptional activator RhaR; Region: PRK13502" /db_xref="CDD:184093" gene complement(4260912..4262101) /gene="rhaT" /locus_tag="STM4050" /db_xref="GeneID:1255577" CDS complement(4260912..4261946) /gene="rhaT" /locus_tag="STM4050" /note="L-rhamnose-proton symport (L-rhamnose-H+ transport protein). (SW:RHAT_SALTY)" /codon_start=1 /transl_table=11 /product="DMT Superfamily L-rhamnose:H+ symporter protein" /protein_id="NP_462931.1" /db_xref="GeneID:1255577" /translation="MSNAITMGIFWHLIGAASAACFYAPFKQVKQWSWETMWSVGGIV SWLILPWTISALLLPDFWAYYGQFNLSTLLPVFLFGAMWGIGNINYGLTMRYLGMSMG IGIAIGITLIVGTLMTPIINGNFDVLIHTEGGRMTLLGVFVALIGVGIVTRAGQLKER KMGIKAEEFNLKKGLLLAVMCGIFSAGMSFAMNAAKPMHEAAAALGVDPLYVALPSYV VIMGGGALVNLGFCFIRLAKVQNLSIKADFSLARPLIISNILLSALGGLMWYLQFFFY AWGHARIPAQYDYMSWMLHMSFYVLCGGLVGLVLKEWKNAGRRPVAVLSLGCVVIIIA ANIVGLGMAS" misc_feature complement(4260915..4261946) /gene="rhaT" /locus_tag="STM4050" /note="L-rhamnose-proton symport protein (RhaT); Region: RhaT; pfam06379" /db_xref="CDD:115061" regulatory complement(4261953..4261958) /regulatory_class="ribosome_binding_site" /gene="rhaT" /locus_tag="STM4050" /note="putative RBS for rhaT; RegulonDB:STMS1H003979" protein_bind complement(4262073..4262093) /gene="rhaT" /locus_tag="STM4050" /note="putative binding site for CRP, RegulonDB: STMS1H000064" /bound_moiety="CRP" regulatory complement(4262074..4262082) /regulatory_class="minus_10_signal" /gene="rhaT" /locus_tag="STM4050" /note="putative -10_signal for rhaT; RegulonDB:STMLTH004642" protein_bind complement(4262081..4262099) /gene="rhaT" /locus_tag="STM4050" /note="putative binding site for RhaS, RegulonDB: STMS1H000361" /bound_moiety="RhaS" regulatory complement(4262093..4262101) /regulatory_class="minus_35_signal" /gene="rhaT" /locus_tag="STM4050" /note="putative -35_signal for rhaT; RegulonDB:STMLTH004642" gene 4262565..4263248 /locus_tag="STM4051" /db_xref="GeneID:1255578" CDS 4262565..4263248 /locus_tag="STM4051" /note="hypothetical 15.6 Kda protein in RHAT 5'region. (SW:YIIY_SALTY)" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_462932.3" /db_xref="GeneID:1255578" /translation="MDSVMRKSLFLLLPLVVTNAHAVYVDVRHEYLDDSKANYDRAYI SHRFANGVGFAIEAISKSGGDDTNKAFNDLETQGNEYTISYQFKTGDVAWQPGFVLET GNGYSTYKPYFRATWTLNESWWVGARYRFEYVRRSSDIRDDDTINRMDVWAGYKWNNF DWTIEGIYKKADKYDLYDGGKDNYEYNFRTAYIIDQWSPFVEVGNVSVNSNSDERQTR FRVGIGYTF" misc_feature 4262631..4263245 /locus_tag="STM4051" /note="Oligogalacturonate-specific porin protein (KdgM); Region: KdgM; pfam06178" /db_xref="CDD:399289" gene complement(4263406..4264720) /locus_tag="STM4052" /db_xref="GeneID:1255579" CDS complement(4263406..4264713) /locus_tag="STM4052" /note="similar to E. coli putative membrane protein (AAC76602.1); Blastp hit to AAC76602.1 (424 aa), 33% identity in aa 5 - 412" /codon_start=1 /transl_table=11 /product="putative C4-dicarboxylate transport system" /protein_id="NP_462933.1" /db_xref="GeneID:1255579" /translation="MIDPIFASCTLIAVFVVLLAMGAPIGICIVIASFSTMMLVLPFD ISMFATAQKMFSSLDSFALLAVPFFVLSGVIMNSGGIAARLVNFAKLFTGKLPGSLSY TNIVGNMMFGAISGSAIAASTSIGGVMVPMSAREGYDRGFAAAVNIASAPTGMLIPPT TAFILYALASGGTSIAALFAGGLVAGVLWGVGCMLVTLVVAKRRNYRVFFTVQKGMAL KVAVEAIPSLLLIVIIVGGIVQGIFTAIEASAIAVVYTLLLTMVFYRTLKIKDLPSIL LQTVVMTGVIMFLLATSSAMSFSMSITNIPAALSDMILGISANKLVILLVITVFLLII GAFMDIGPAILIFTPILLPIMAKLGVDPVHFGIIMIYNLAIGTITPPVGSGLYVGASV GKVKVEEVIKPLLPFYGAIIGVLLLITYIPEITLFLPRLLGIM" misc_feature complement(4263415..4264683) /locus_tag="STM4052" /note="TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]; Region: DctQ; COG1593" /db_xref="CDD:441201" gene complement(4264706..4265229) /locus_tag="STM4053" /db_xref="GeneID:1255580" CDS complement(4264706..4265221) /locus_tag="STM4053" /note="similar to E. coli orf, hypothetical protein (AAC76601.1); Blastp hit to AAC76601.1 (157 aa), 25% identity in aa 4 - 151" /codon_start=1 /transl_table=11 /product="putative C4-dicarboxylate transport system" /protein_id="NP_462934.1" /db_xref="GeneID:1255580" /translation="MNTFRKGLDLLLGAICCLVLAIMVGIACWQVVSRYILGVPSTLT EEMLRFLLVWVSMLGMAFVAGQKQHISLTLLLDKVSPTIRGWWDIILQVIFIAFSIWV LIIGGLKISAISMLQISPALGIPMGKIYYALPCAGVLIILYGLLNIVDALKAIHSATD TTEHTLEKSHD" misc_feature complement(4264730..4265221) /locus_tag="STM4053" /note="TRAP-type C4-dicarboxylate transport system, small permease component YiaM [Carbohydrate transport and metabolism]; Region: DctM; COG3090" /db_xref="CDD:442324" regulatory complement(4264715..4264720) /regulatory_class="ribosome_binding_site" /locus_tag="STM4053" /note="putative RBS for STM4052; RegulonDB:STMS1H003980" regulatory complement(4265224..4265229) /regulatory_class="ribosome_binding_site" /locus_tag="STM4053" /note="putative RBS for STM4053; RegulonDB:STMS1H003981" gene complement(4265240..4266229) /locus_tag="STM4054" /db_xref="GeneID:1255581" CDS complement(4265240..4266223) /locus_tag="STM4054" /note="hypothetical protein in sodA 5'region. (SW:YIIZ_SALTY)" /codon_start=1 /transl_table=11 /product="putative dicarboxylate-binding periplasmic protein" /protein_id="NP_462935.1" /db_xref="GeneID:1255581" /translation="MKQPGFIRLATLALLSTLSFFSHGETILRLAYAENSQPVKDALH FLGQQVEEKTGGDIKVQYFPDGQLGGERELVELTQVGVVDITKVSSGLMESFSPEYGV FSLPYLFATVEEYYRVMDNPQVMEPVYQSTAAQGFIGVGWYDSGARNFYMSKAPIKRI EDLRGKKIRVMQSETAIQTLKLLGASPIAMSQAEVYTSLQQGILDGAENNEFALTIAR HGEVARYYTYDMHTRIPDILLMSTLTLEKLTPEQQRIVEAAIKASIEFEKAAWDKEIE KTRLAAVKDFNVEFYEIDKKPFQEAVQPIYDGLKNKPRLYGLYQRIQTAKN" misc_feature complement(4265255..4266136) /locus_tag="STM4054" /note="Uncharacterized substrate-binding protein of the Tripartite ATP-independent Periplasmic transporter family; the type 2 periplasmic-binding protein fold; Region: PBP2_TRAP_SBP_like_3; cd13671" /db_xref="CDD:270389" misc_feature complement(order(4265522..4265524,4265585..4265587, 4265594..4265599,4265648..4265650,4265711..4265713, 4265717..4265719)) /locus_tag="STM4054" /note="putative chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270389" regulatory complement(4266224..4266229) /regulatory_class="ribosome_binding_site" /locus_tag="STM4054" /note="putative RBS for STM4054; RegulonDB:STMS1H003982" gene 4266430..4267172 /gene="sodA" /locus_tag="STM4055" /db_xref="GeneID:1255582" regulatory 4266430..4266438 /regulatory_class="minus_35_signal" /gene="sodA" /locus_tag="STM4055" /note="putative -35_signal for sodA; RegulonDB:STMLTH004643" protein_bind 4266435..4266448 /gene="sodA" /locus_tag="STM4055" /note="putative binding site for IHF, RegulonDB: STMS1H000227" /bound_moiety="IHF" protein_bind 4266451..4266471 /gene="sodA" /locus_tag="STM4055" /note="putative binding site for Fur, RegulonDB: STMS1H000188" /bound_moiety="Fur" protein_bind 4266457..4266519 /gene="sodA" /locus_tag="STM4055" /note="putative binding site for ArcA, RegulonDB: STMS1H000020" /bound_moiety="ArcA" protein_bind 4266457..4266471 /gene="sodA" /locus_tag="STM4055" /note="putative binding site for IHF, RegulonDB: STMS1H000231" /bound_moiety="IHF" regulatory 4266457..4266465 /regulatory_class="minus_10_signal" /gene="sodA" /locus_tag="STM4055" /note="putative -10_signal for sodA; RegulonDB:STMLTH004643" protein_bind 4266459..4266481 /gene="sodA" /locus_tag="STM4055" /note="putative binding site for FNR, RegulonDB: STMS1H000166" /bound_moiety="FNR" protein_bind 4266459..4266479 /gene="sodA" /locus_tag="STM4055" /note="putative binding site for SoxS, RegulonDB: STMS1H000367" /bound_moiety="SoxS" protein_bind 4266463..4266483 /gene="sodA" /locus_tag="STM4055" /note="putative binding site for Fur, RegulonDB: STMS1H000192" /bound_moiety="Fur" protein_bind 4266469..4266483 /gene="sodA" /locus_tag="STM4055" /note="putative binding site for IHF, RegulonDB: STMS1H000225" /bound_moiety="IHF" protein_bind 4266485..4266499 /gene="sodA" /locus_tag="STM4055" /note="putative binding site for IHF, RegulonDB: STMS1H000228" /bound_moiety="IHF" protein_bind 4266489..4266551 /gene="sodA" /locus_tag="STM4055" /note="putative binding site for ArcA, RegulonDB: STMS1H000017" /bound_moiety="ArcA" regulatory 4266540..4266545 /regulatory_class="ribosome_binding_site" /gene="sodA" /locus_tag="STM4055" /note="putative RBS for sodA; RegulonDB:STMS1H003983" CDS 4266552..4267172 /gene="sodA" /locus_tag="STM4055" /EC_number="1.15.1.1" /note="manganese; superoxide dismutase [MN]. (SW:SODM_SALTY)" /codon_start=1 /transl_table=11 /product="superoxide dismutase" /protein_id="NP_462936.1" /db_xref="GeneID:1255582" /translation="MSYTLPSLPYAYDALEPHFDKQTMEIHHTKHHQTYVNNANAALE NLPEFASLPVEELITKLDQVPADKKTVLRNNAGGHANHSLFWKGLKKGTTLQGDLKAA IERDFGSVDNFKAEFEKAAATRFGSGWAWLVLKGDKLAVVSTANQDSPLMGEAISGAS GFPILGLDVWEHAYYLKFQNRRPDYIKEFWNVVNWDEAAARFAAKK" misc_feature 4266552..4267169 /gene="sodA" /locus_tag="STM4055" /note="superoxide dismutase [Mn]; Region: PRK10925" /db_xref="CDD:182843" gene 4267179..4267931 /gene="yiiM" /locus_tag="STM4056" /db_xref="GeneID:1255583" CDS 4267179..4267931 /gene="yiiM" /locus_tag="STM4056" /note="similar to E. coli orf, hypothetical protein (AAC76892.1); Blastp hit to AAC76892.1 (234 aa), 76% identity in aa 4 - 233" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462937.3" /db_xref="GeneID:1255583" /translation="MHVCRSESDDSLFLYPRKEQQMHYPVDVFIGKIRDYDGSRPSAI AKVQIDGELMLTELGLAGDQQAEKKIHGGPDRALCHYPREHYADWIRQFPEQATLFCA PAFGENLSTNGMTEHNVFIGDIYRWGEVLIQVTQPRSPCFKLNFHFAISDMALLMQNS GKTGWLYRVIAPGKVSSDAPLELASRLSDVSVHEAGVIAWSMPFDDEQYHRLLSAAGL SASWSRTMQKRRLSGKIEDSARRLWGDKTPPK" misc_feature 4267242..4267910 /gene="yiiM" /locus_tag="STM4056" /note="6-N-hydroxylaminopurine resistance protein; Provisional; Region: PRK11536" /db_xref="CDD:183182" gene 4267936..4268338 /locus_tag="STM4057" /db_xref="GeneID:1255584" regulatory 4267936..4267941 /regulatory_class="ribosome_binding_site" /locus_tag="STM4057" /note="putative RBS for STM4057; RegulonDB:STMS1H003984" CDS 4267943..4268338 /locus_tag="STM4057" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462938.1" /db_xref="GeneID:1255584" /translation="MTEAENAVAIVKEFLVASMIPDAERAATYMHPEVKITFTGGRAM AGAADIAQFNGARYKWVKKALGEFDAVQHDHYVVIYSNGTLYGEWPDGRPFAGNRFID RFEVRDGKITRMDVWNDSAEWILVPEISR" misc_feature 4267958..4268314 /locus_tag="STM4057" /note="Ketosteroid isomerase-related protein [General function prediction only]; Region: YesE; COG3631" /db_xref="CDD:442849" gene complement(4268389..4269776) /gene="cpxA" /locus_tag="STM4058" /db_xref="GeneID:1255585" CDS complement(4268389..4269762) /gene="cpxA" /locus_tag="STM4058" /EC_number="2.7.3.-" /note="senses misfolded proteins in bacterial envelope; similar to E. coli probable sensor protein (histidine protein kinase), acting on arcA (AAC76893.1); Blastp hit to AAC76893.1 (457 aa), 96% identity in aa 1 - 457" /codon_start=1 /transl_table=11 /product="sensory kinase in two-component regulatory system with CpxR" /protein_id="NP_462939.1" /db_xref="GeneID:1255585" /translation="MIGSLTARIFAIFWLTLALVLMLVLMLPKLDSRQMTELLDSEQR QGLMIEQHVEAELANDPPNDLMWWRRLFRAIDKWAPPGQRLLLVTSEGRVIGAERSEM QIIRNFIGQADNADHPQKKKYGRVEMVGPFSVRDGEDNYQLYLIRPASSSQSDFINLL FDRPLLLLIVTMLVSSPLLLWLAWSLAKPARKLKNAADEVAQGNLRQHPELEAGPQEF LAAGASFNQMVTALERMMTSQQRLLSDISHELRTPLTRLQLGTALLRRRGGESKELER IETEAQRLDSMINDLLVMSRNQQKNALVSETMKANQLWGEVLDNAAFEAEQMGKSLTV NYPPGPWPLYGNPNALESALENIVRNALRYSHTKIEVGFSVDKDGITITVDDDGPGVS PEDREQIFRPFYRTDEARDRESGGTGLGLAIVESAMQQHRGWVKADDSPLGGLRLTLW LPLYKRT" misc_feature complement(4268395..4269762) /gene="cpxA" /locus_tag="STM4058" /note="envelope stress sensor histidine kinase CpxA; Region: cpxA; PRK09470" /db_xref="CDD:236532" gene complement(4269759..4270471) /gene="cpxR" /locus_tag="STM4059" /db_xref="GeneID:1255586" CDS complement(4269759..4270457) /gene="cpxR" /locus_tag="STM4059" /note="regulates expression of protein folding and degrading factors (OmpR family); similar to E. coli transcriptional regulator in 2-component system (AAC76894.1); Blastp hit to AAC76894.1 (232 aa), 97% identity in aa 1 - 232" /codon_start=1 /transl_table=11 /product="response reguator in two-component regulatory system with CpxA" /protein_id="NP_462940.1" /db_xref="GeneID:1255586" /translation="MNKILLVDDDRELTSLLKELLEMEGFNVLVAHDGEQALELLDDS IDLLLLDVMMPKKNGIDTLKALRQTHQTPVIMLTARGSELDRVLGLELGADDYLPKPF NDRELVARIRAILRRSHWSEQQQSSDNGSPTLEVDALSLNPGRQEASFDGQTLELTGT EFTLLYLLAQHLGQVVSREHLSQEVLGKRLTPFDRAIDMHISNLRRKLPERKDGHPWF KTLRGRGYLMVSAS" misc_feature complement(4269762..4270457) /gene="cpxR" /locus_tag="STM4059" /note="envelope stress response regulator transcription factor CpxR; Region: PRK10955" /db_xref="CDD:182864" regulatory complement(4269771..4269776) /regulatory_class="ribosome_binding_site" /gene="cpxR" /locus_tag="STM4059" /note="putative RBS for cpxA; RegulonDB:STMS1H003985" regulatory complement(4270466..4270471) /regulatory_class="ribosome_binding_site" /gene="cpxR" /locus_tag="STM4059" /note="putative RBS for cpxR; RegulonDB:STMS1H003986" gene 4270595..4271108 /gene="cpxP" /locus_tag="STM4060" /db_xref="GeneID:1255587" regulatory 4270595..4270600 /regulatory_class="ribosome_binding_site" /gene="cpxP" /locus_tag="STM4060" /note="putative RBS for cpxP; RegulonDB:STMS1H003987" CDS 4270608..4271108 /gene="cpxP" /locus_tag="STM4060" /note="rescue from transitory stresses; similar to E. coli orf, hypothetical protein (AAC76896.1); Blastp hit to AAC76896.1 (122 aa), 94% identity in aa 1 - 122" /codon_start=1 /transl_table=11 /product="periplasmic repressor of cpx regulon by interaction with CpxA" /protein_id="NP_462941.1" /db_xref="GeneID:1255587" /translation="MRKVTAAVMASTLAFSFLSHAAEVVTSDNWHPGDGATQRSAQNH MFDGISLTEHQRQQMRDLMQQARHEQPPVNVSEMETMHRLVTAEKFDESAVRAQAEKM AQEQVARQVEMARVRNQMYRLLTPEQQAVLNEKHQQRMEQLRDVAQWQKSSSLKLLSS SNSRSQ" misc_feature 4270608..4271060 /gene="cpxP" /locus_tag="STM4060" /note="cell-envelope stress modulator CpxP; Region: cpxP; PRK10363" /db_xref="CDD:182410" misc_feature order(4270839..4270841,4270851..4270853,4270860..4270865, 4270875..4270877,4270881..4270883,4270893..4270895, 4270902..4270904,4270914..4270916,4270926..4270928, 4270938..4270940,4270947..4270952,4270959..4270961, 4270968..4270970,4271001..4271006,4271013..4271015) /gene="cpxP" /locus_tag="STM4060" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:197366" gene 4271244..4272158 /gene="yiiP" /locus_tag="STM4061" /db_xref="GeneID:1255588" regulatory 4271244..4271249 /regulatory_class="ribosome_binding_site" /gene="yiiP" /locus_tag="STM4061" /note="putative RBS for yiiP; RegulonDB:STMS1H003988" CDS 4271256..4272158 /gene="yiiP" /locus_tag="STM4061" /note="similar to E. coli putative transport system permease protein (AAC76897.1); Blastp hit to AAC76897.1 (300 aa), 92% identity in aa 1 - 296" /codon_start=1 /transl_table=11 /product="putative CDF family transport protein" /protein_id="NP_462942.1" /db_xref="GeneID:1255588" /translation="MNQTYGRLVSRAAIAATAMASALLLIKIFAWWYTGSVSILAALV DSLVDIAASLTNLLVVRYSLQPADDEHTFGHGKAESLAALAQSMFISGSALFLFLTSI QNLIKPTPMNDPGVGIGVTVIALICTIILVTFQRWVVRKTQSQAVRADMLHYQSDVMM NGAILIALGLSWYGWHRADALFALGIGIYILYSALRMGYEAVQSLLDRALPDAERQEI IDIVTSWPGVSGAHDLRTRQSGPTRFIQIHLEMEDNLPLVQAHFVADQVEQAILQRFP GSDVIIHQDPCSVVPREGRKFELV" misc_feature 4271256..4272152 /gene="yiiP" /locus_tag="STM4061" /note="CDF family cation-efflux pump FieF; Region: fieF; PRK09509" /db_xref="CDD:181919" gene 4272334..4273305 /gene="pfkA" /locus_tag="STM4062" /db_xref="GeneID:1255589" regulatory 4272334..4272339 /regulatory_class="ribosome_binding_site" /gene="pfkA" /locus_tag="STM4062" /note="putative RBS for pfkA; RegulonDB:STMS1H003989" CDS 4272343..4273305 /gene="pfkA" /locus_tag="STM4062" /EC_number="2.7.1.11" /note="similar to E. coli 6-phosphofructokinase I (AAC76898.1); Blastp hit to AAC76898.1 (320 aa), 95% identity in aa 1 - 320" /codon_start=1 /transl_table=11 /product="6-phosphofructokinase I" /protein_id="NP_462943.1" /db_xref="GeneID:1255589" /translation="MIKKIGVLTSGGDAPGMNAAIRGVVRAALTEGLEVMGIYDGYLG LYEDRMVQLDRYSVSDMINRGGTFLGSARFPEFRDENIRAVAIENLKKRGIDALVVIG GDGSYMGAKRLTEMGFPCIGLPGTIDNDIKGTDYTIGYFTALGTVVEAIDRLRDTSSS HQRISIVEVMGRYCGDLTLAAAIAGGCEFIVVPEVEFNREDLVAEIKAGIAKGKKHAI VAITEHMCDVDELAHFIEKETGRETRATVLGHIQRGGSPVPYDRILASRMGAYAIDLL LEGHGGRCVGIQNEQLVHHDIIDAIENMKRPFKSDWMECAKKLY" misc_feature 4272346..4273299 /gene="pfkA" /locus_tag="STM4062" /note="ATP-dependent 6-phosphofructokinase; Region: PRK03202" /db_xref="CDD:235111" misc_feature order(4272376..4272378,4272466..4272468,4272559..4272561, 4272652..4272660,4272664..4272669,4272718..4272720, 4272724..4272726,4272730..4272732,4272850..4272858, 4273009..4273011,4273090..4273092,4273099..4273101) /gene="pfkA" /locus_tag="STM4062" /note="active site" /db_xref="CDD:238388" misc_feature order(4272376..4272378,4272466..4272468,4272559..4272561, 4272652..4272660,4272664..4272669) /gene="pfkA" /locus_tag="STM4062" /note="ADP/pyrophosphate binding site [chemical binding]; other site" /db_xref="CDD:238388" misc_feature order(4272406..4272408,4272418..4272420,4272505..4272507, 4272520..4272522,4272529..4272531,4272748..4272750, 4272784..4272786,4272796..4272798,4272805..4272807, 4272889..4272894,4272898..4272900,4272982..4272984, 4273126..4273131,4273141..4273143,4273162..4273164, 4273207..4273209,4273294..4273302) /gene="pfkA" /locus_tag="STM4062" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:238388" misc_feature order(4272406..4272408,4272418..4272420,4272505..4272510, 4272517..4272522,4272805..4272807,4272898..4272900, 4272904..4272906,4272976..4272978,4272982..4272990) /gene="pfkA" /locus_tag="STM4062" /note="allosteric effector site [active]" /db_xref="CDD:238388" misc_feature order(4272718..4272720,4272724..4272726,4272730..4272732, 4272829..4272831,4272850..4272858,4273009..4273011, 4273072..4273074,4273090..4273092,4273099..4273101) /gene="pfkA" /locus_tag="STM4062" /note="fructose-1,6-bisphosphate binding site; other site" /db_xref="CDD:238388" gene 4273503..4274498 /gene="sbp" /locus_tag="STM4063" /db_xref="GeneID:1255590" regulatory 4273503..4273508 /regulatory_class="ribosome_binding_site" /gene="sbp" /locus_tag="STM4063" /note="putative RBS for sbp; RegulonDB:STMS1H003990" CDS 4273509..4274498 /gene="sbp" /locus_tag="STM4063" /note="ABC superfamily (bind_prot); sulfate-binding protein. (SW:SUBI_SALTY)" /codon_start=1 /transl_table=11 /product="sulfate transport protein" /protein_id="NP_462944.1" /db_xref="GeneID:1255590" /translation="MKKWGVGFTLLLASTSILAKDIQLLNVSYDPTRELYEQYNKAFS AHWKQETGDNVVIRQSHGGSGKQATSVINGIEADVVTLALAYDVDAIAERGRIDKNWI KRLPDNSAPYTSTIVFLVRKGNPKQIHDWNDLIKPGVSVITPNPKSSGGARWNYLAAW GYALHHNNNDQAKAQDFVKALFKNVEVLDSGARGSTNTFVERGIGDVLIAWENEALLA TNELGKDKFEIVTPSESILAEPTVSVVDKVVEKKDTKAVAEAYLKYLYSPEGQEIAAK NFYRPRDADVAKKYDDAFPKLKLFTIDEVFGGWAKAQKDHFANGGTFDQISKR" misc_feature 4273509..4274495 /gene="sbp" /locus_tag="STM4063" /note="sulfate ABC transporter substrate-binding protein; Region: PRK10752" /db_xref="CDD:182700" misc_feature order(4273593..4273601,4273692..4273700,4273755..4273757, 4273953..4273961,4274079..4274084,4274139..4274141) /gene="sbp" /locus_tag="STM4063" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270226" gene 4274584..4275354 /gene="ushB" /locus_tag="STM4064" /db_xref="GeneID:1255591" regulatory 4274584..4274589 /regulatory_class="ribosome_binding_site" /gene="ushB" /locus_tag="STM4064" /note="putative RBS for ushB; RegulonDB:STMS1H003991" CDS 4274599..4275354 /gene="ushB" /locus_tag="STM4064" /EC_number="3.6.1.26" /note="CDP-diacylglycerol pyrophosphatase. (SW:CDH_SALTY)" /codon_start=1 /transl_table=11 /product="CDP-diacylglycerol phosphotidylhydrolase" /protein_id="NP_462945.1" /db_xref="GeneID:1255591" /translation="MKKTGYFLLAVIVIVAAAGVGYWKFSGNPDALREIVLEQCLPDQ LQHQNPAPCAEVKPRAGYVVFKDRHGPLQYLLMPTYRINGTESPLLLEPATPNFFWLA WQARGYMSKKYGHDIPDSAVSLAINSRLGRSQDHLHIHISCIRPDVREQLDNDLTRIS TRWLPLPGGLMGHEYLARRVTESELAQRSPFMMLAEEVPEARDHMGRYALAVVRQSDD SFVLLATERNLLTFNRASAEEIQDHSCAILSSR" misc_feature 4274599..4275345 /gene="ushB" /locus_tag="STM4064" /note="CDP-diacylglycerol diphosphatase, bacterial type; Region: cdh; TIGR00672" /db_xref="CDD:129755" gene 4275610..4276951 /locus_tag="STM4065" /db_xref="GeneID:1255592" regulatory 4275610..4275615 /regulatory_class="ribosome_binding_site" /locus_tag="STM4065" /note="putative RBS for STM4065; RegulonDB:STMS1H003992" CDS 4275617..4276951 /locus_tag="STM4065" /note="hypothetical protein (gi|7688349)" /codon_start=1 /transl_table=11 /product="putative permease of the Na+:galactoside symporter family" /protein_id="NP_462946.1" /db_xref="GeneID:1255592" /translation="MKLSIVEKIGFGAGDMAINVVIIAMQLLLAYFYTDIYGLSAADV GVLFVVVRMIDAIIDPAMGVLTDKLNTRWGRYRPWLLWFAIPFGFAVYLMFITPDMAY MAKLAWAYGTYILMTLVYTAITIPYISMIGVITSDPVERLSANGYRFVMTKIAAFLVT IVVPMLAVWLGQGNKALGYQFSMGLMGAMGALLFIFCFLTTRERSEPEITSLSVGKQF KYLLRNDQWIILGVVILLLMCGYVIRGSVAAYYAKYYLNGGDSLISPFLTTGVVASIL AMIATTWITKFWDKIKMFRYTQIITFILSALMYFSVGRENLVLAFAFYFLINFFCDMQ MPVFWSSIAEAVDYGEKKTGLRVSGLAFGGILFFQKFGMGIAGGILGFLLSHFGYQAD VEQSARSLTGIALMMTLIPALFHLAVGLLMKKYLINNEYYRDIQLALAQKQA" misc_feature 4275617..4276948 /locus_tag="STM4065" /note="Na+/melibiose symporter or related transporter [Carbohydrate transport and metabolism]; Region: MelB; COG2211" /db_xref="CDD:441813" gene 4276955..4277921 /locus_tag="STM4066" /db_xref="GeneID:1255593" regulatory 4276955..4276960 /regulatory_class="ribosome_binding_site" /locus_tag="STM4066" /note="putative RBS for STM4066; RegulonDB:STMS1H003993" CDS 4276962..4277921 /locus_tag="STM4066" /EC_number="2.7.1.4" /EC_number="3.6.1.26" /note="ribokinase family; similar to E. coli putative kinase (AAD13445.1); Blastp hit to AAD13445.1 (300 aa), 28% identity in aa 14 - 297" /codon_start=1 /transl_table=11 /product="putative sugar kinase" /protein_id="NP_462947.1" /db_xref="GeneID:1255593" /translation="MKAMNKVWVIGDASVDLVPEKQNSYLKCPGGASANVGVCVARLG GECGFIGCLGDDDAGRFLRQVFQDNGVDVTFLRLDADLTSAVLIVNLTADGERSFTYL VHPGADTYVSPQDLPPFRQYEWFYFSSIGLTDRPAREACLEGARRMREAGGYVLFDVN LRSKMWGNTDEIPELIARSAALASICKVSADELCQLSGASHWQDARYYLRDLGCDTTI ISLGADGALLITAEGEFHFPAPRVDVVDTTGAGDAFVGGLLFTLSRANCWDHALLAEA ISNANACGAMAVTAKGAMTALPFPDQLNTFLSSHSLAQAMTVK" misc_feature 4276968..4277873 /locus_tag="STM4066" /note="aminoimidazole riboside kinase; Provisional; Region: PRK09434" /db_xref="CDD:236514" misc_feature order(4277064..4277066,4277706..4277708,4277715..4277717) /locus_tag="STM4066" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:238572" misc_feature order(4277526..4277528,4277619..4277621,4277700..4277702, 4277709..4277714,4277721..4277723) /locus_tag="STM4066" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:238572" gene 4277924..4278971 /locus_tag="STM4067" /db_xref="GeneID:1255594" regulatory 4277924..4277929 /regulatory_class="ribosome_binding_site" /locus_tag="STM4067" /note="putative RBS for STM4067; RegulonDB:STMS1H003994" CDS 4277931..4278971 /locus_tag="STM4067" /note="similar to E. coli orf, hypothetical protein (AAC75160.1); Blastp hit to AAC75160.1 (334 aa), 30% identity in aa 108 - 325, 32% identity in aa 5 - 188" /codon_start=1 /transl_table=11 /product="putative ADP-ribosylglycohydrolase" /protein_id="NP_462948.1" /db_xref="GeneID:1255594" /translation="MHVDRNKILGCLVGAAAADAMGAATEVRTQQQIKDYFGGWVTTF QKPPADTFGRCNEAGMCTDDFIQAKYIMDALLRHQRQVSDEAMREAFQQWLDYPYYAN FTGPTTRAAMKAIFNDNRASLQGELEGEKQSVQIINKGNAEATNGAAMKIWPAAVLHP GDIDAAIECALQICRFTHNNVLAMSGAAAMAAATSEALRAQTNADSIIAAGIYGAQRG YLLAQEQGAMMVAGPSVARRIELAVDIGKRHRHWETAVVELADIIGSGLHVSEAVPAA FGLFACCPNSAVDAIISGVNIGNDTDTVATMVGAISGAFHGVEAFPADYLTTLDRMNH FDLAELARQIAG" misc_feature 4278003..4278965 /locus_tag="STM4067" /note="ADP-ribosylglycohydrolase [Posttranslational modification, protein turnover, chaperones]; Region: DraG; COG1397" /db_xref="CDD:441007" gene 4279027..4279756 /locus_tag="STM4068" /db_xref="GeneID:1255595" regulatory 4279027..4279032 /regulatory_class="ribosome_binding_site" /locus_tag="STM4068" /note="putative RBS for STM4068; RegulonDB:STMS1H003995" CDS 4279034..4279756 /locus_tag="STM4068" /note="similar to E. coli transcriptional regulator of succinylCoA synthetase operon (AAC73824.1); Blastp hit to AAC73824.1 (240 aa), 28% identity in aa 5 - 220" /codon_start=1 /transl_table=11 /product="putative gntR family regulatory protein" /protein_id="NP_462949.1" /db_xref="GeneID:1255595" /translation="MQVDKTSFTPLYKQLFFIICQQIQNGSLPLGSQLPTQKEIARSY NVSLIVVKQAWSELINAGIISSQRGSGSVVCSVPEGVSYGHTFRGITRDLQDASVAIE NRILEIAPRRARDAQADGLSLPAQHHYLYISRIRCLNNRPFNHEKIYLDLSFFPGLEL TPQALEHTSLYSLLNVTSDSAIEKVEAILPSADLCEKLQIAANKPLLSVARQTFQAGK DSPFEYCRYYVLSEYFGEIHYH" misc_feature 4279049..4279735 /locus_tag="STM4068" /note="DNA-binding transcriptional regulator, GntR family [Transcription]; Region: MngR; COG2188" /db_xref="CDD:441791" gene 4279846..4280018 /locus_tag="STM4069" /db_xref="GeneID:1255596" regulatory 4279846..4279851 /regulatory_class="ribosome_binding_site" /locus_tag="STM4069" /note="putative RBS for STM4069; RegulonDB:STMS1H003996" CDS 4279854..4280018 /locus_tag="STM4069" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462950.1" /db_xref="GeneID:1255596" /translation="MSLWLSHPLFLPSIIVGVTILLWATSPLPEFMTALLFFAVAMGP GKVPARAGML" gene 4280029..4280165 /locus_tag="STM4070" /db_xref="GeneID:1255597" regulatory 4280029..4280034 /regulatory_class="ribosome_binding_site" /locus_tag="STM4070" /note="putative RBS for STM4070; RegulonDB:STMS1H003997" CDS 4280034..4280165 /locus_tag="STM4070" /note="similar to E. coli CDP-diacylglycerol phosphotidylhydrolase (AAC76900.1); Blastp hit to AAC76900.1 (251 aa), 81% identity in aa 214 - 250" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462951.1" /db_xref="GeneID:1255597" /translation="MIRQSDGSFVLLATERNLLIFNRASAEEIQDHQCDILNQQVIK" misc_feature <4280034..4280153 /locus_tag="STM4070" /note="CDP-diacylglycerol pyrophosphatase [Lipid transport and metabolism]; Region: Cdh; COG2134" /db_xref="CDD:441737" gene complement(4280255..4280525) /locus_tag="STM4071" /db_xref="GeneID:1255598" CDS complement(4280255..4280521) /locus_tag="STM4071" /codon_start=1 /transl_table=11 /product="putative mannose-6-phosphate isomerase" /protein_id="NP_462952.1" /db_xref="GeneID:1255598" /translation="MGVVILQPGQSFPNHRHNTACEIFYTLSGEVCLYLEGTPHILQT GDVLQCEPGEAHYLINNGDKPWKGVFIKSPHLENDSHPADPPAW" misc_feature complement(4280327..4280518) /locus_tag="STM4071" /note="Cupin domain; Region: Cupin_2; pfam07883" /db_xref="CDD:462300" regulatory complement(4280520..4280525) /regulatory_class="ribosome_binding_site" /locus_tag="STM4071" /note="putative RBS for STM4071; RegulonDB:STMS1H003998" gene complement(4280619..4282223) /gene="ydeV" /locus_tag="STM4072" /db_xref="GeneID:1255599" CDS complement(4280619..4282211) /gene="ydeV" /locus_tag="STM4072" /note="similar to E. coli putative kinase (AAC74584.1); Blastp hit to AAC74584.1 (530 aa), 82% identity in aa 1 - 530" /codon_start=1 /transl_table=11 /product="putative sugar kinase" /protein_id="NP_462953.1" /db_xref="GeneID:1255599" /translation="MARLCTHTESGHYLMALDAGTGSVRAVIFDLQGKQIAVGQAEWQ HLAVPDVPGSMEFDLAKNWQLACQCIRQALQKAAIPATAIAAVSACSMREGIVIYDSN GEPIWACANVDARAAHEVSELKELYDNTFEEEVYRCSGQTLALSAIPRLLWLAHHRPD IYHRASTVTMISDWMAFMLSGELAVDPSNAGTTGLLDLVTRNWKRSLLQMAGLRSDIL SPVKETGTLLGHISQKAAEQCDLQAGTPVIVGGGDVQLGCLGLGVVRPAQTAVLGGTF WQQVVNLPAPVTDPNMNVRINPHVIPGMVQTESISFFTGLTMRWFRDAFCAEEKLIAE RLGIDAYSLLEDMASRVPPGAYGVMPIFSDVMRFKRWYHAAPSFINLSIDPEKCNKAT LFRALEENAAIVSACNLQQIAAFSGVQADSLVFAGGGSKGKLWSQILADVTGLTVHVP VVKEATALGCAIAAGVGVGVWPSLAETGEKLVRWDREHKPNPENFAVYQQAREKWQAV YQDQRALVDGGLTTSLWKAPGL" misc_feature complement(4280622..4282184) /gene="ydeV" /locus_tag="STM4072" /note="autoinducer-2 (AI-2) kinase; Provisional; Region: PRK10939" /db_xref="CDD:182853" regulatory complement(4282218..4282223) /regulatory_class="ribosome_binding_site" /gene="ydeV" /locus_tag="STM4072" /note="putative RBS for ydeV; RegulonDB:STMS1H003999" gene complement(4282299..4283270) /gene="ydeW" /locus_tag="STM4073" /db_xref="GeneID:1255600" CDS complement(4282299..4283258) /gene="ydeW" /locus_tag="STM4073" /note="similar to E. coli putative transcriptional regulator, sorC family (AAC74585.1); Blastp hit to AAC74585.1 (317 aa), 77% identity in aa 4 - 316" /codon_start=1 /transl_table=11 /product="putative transcriptional repressor" /protein_id="NP_462954.1" /db_xref="GeneID:1255600" /translation="MSDNTLVSDYGMCEEEQVARIAWFYYHDGLTQSEISERLGLTRL KVSRLLEKGHQSGIIRVQINSRFEGCLEYENALRNHFALQNIRVLPALPDADIGLRLG IGAAHMLMESLRPQQLLAVGFGEATMTTLKRLSGFISAQQIRLVTLSGGVGPYMTGIG QLDAACSVSIMPAPLRASSQEIACTLRNENSVRDVMLTAQAADAAIVGIGAINQKDQA SILKSGYITQGEQLMIGRKGAVGDILGYFFDAHGEIIPDIKIHNELIGLKLNSLSTIP TVIGVAGGEQKAEAIIAAMRGNYINALVTDQKTAGKIIQIIEK" misc_feature complement(4282305..4283258) /gene="ydeW" /locus_tag="STM4073" /note="transcriptional regulator LsrR; Provisional; Region: PRK15418" /db_xref="CDD:237962" regulatory complement(4283265..4283270) /regulatory_class="ribosome_binding_site" /gene="ydeW" /locus_tag="STM4073" /note="putative RBS for ydeW; RegulonDB:STMS1H004000" gene 4283503..4285049 /gene="ego" /locus_tag="STM4074" /db_xref="GeneID:1255601" regulatory 4283503..4283508 /regulatory_class="ribosome_binding_site" /gene="ego" /locus_tag="STM4074" /note="putative RBS for ego; RegulonDB:STMS1H004001" CDS 4283514..4285049 /gene="ego" /locus_tag="STM4074" /note="ATPase component; similar to E. coli putative ATP-binding component of a transport system (AAC74586.1); Blastp hit to AAC74586.1 (511 aa), 75% identity in aa 1 - 511" /codon_start=1 /transl_table=11 /product="putative ABC-type sugar aldose transport system" /protein_id="NP_462955.1" /db_xref="GeneID:1255601" /translation="MQISHNTASPLICVQNIYKSYSGVEVLKGIDFTLHAGEVHALLG GNGAGKSTLMKIIAGIVPPDGGTIDIAGVRCSHLTPLKAHQYGIYLVPQEPLLFPSLS VRENILFGLQGRQASTEKMQQLLKAMGCQLDPASAAGTLDVADRQIVEIMRGLMRDSR ILILDEPTASLTPAETDRLFTRLQELLKKGVGIVFISHKLPEIRQLAHCVSVMRDGKI ALFGKTHDLSTDEIIQAITPATQGVSLSANQKLWLELPGSRPQNERGATVLALESLTG EGFMNINLEVRAGEILGLAGLVGAGRTELAETLYGIRPVNAGRMLFNGQEINALTTQQ RLQLGLVYLPEDRQSSGLYLDASLAWNVCSLTHNQKGFWIKPQRDNATLERYHRALNI KLNNAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARSDIYQLLRSIA QQNVAVLFISSDLEEIEQMADRVYVMHQGELGGPALCGEEINVDTIMHVAFGEHGASE ATC" misc_feature 4283514..4285046 /gene="ego" /locus_tag="STM4074" /note="autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional; Region: PRK15439" /db_xref="CDD:185336" gene 4285035..4286086 /gene="ydeY" /locus_tag="STM4075" /db_xref="GeneID:1255602" regulatory 4285035..4285040 /regulatory_class="ribosome_binding_site" /gene="ydeY" /locus_tag="STM4075" /note="putative RBS for ydeY; RegulonDB:STMS1H004002" CDS 4285043..4286086 /gene="ydeY" /locus_tag="STM4075" /note="ABC superfamily (membrane); similar to E. coli putative transport system permease protein (AAC74587.1); Blastp hit to AAC74587.1 (342 aa), 83% identity in aa 1 - 342" /codon_start=1 /transl_table=11 /product="putative sugar transport protein" /protein_id="NP_462956.1" /db_xref="GeneID:1255602" /translation="MLKFIQNNREATALLAIVCLFVFPGALDSQYLSVQTLTMVFSSA QILMLLAIGATMVMLTRNIDVSVGSTTGMCAVLLGVMLNAGYSLPVACLATLILGIVA GFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIEGLPAGLKQLSAPVFLGIS AIGWFTLVLALLMAWLLAKTAFGRNFYATGDNLQGARQLGVRTEMVRIMAFSLNGGMA ALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGGSGTVIGAILGAYFLTQID SVLVLLRIPAWWNDFIAGLVLLGVLVFDGRLRCALQRNLRRQKYARFISPPTPLQTEA KTHAQQNKNKEVA" misc_feature 4285043..4286083 /gene="ydeY" /locus_tag="STM4075" /note="autoinducer 2 ABC transporter permease LsrC; Provisional; Region: PRK15432" /db_xref="CDD:185330" misc_feature 4285622..4285678 /gene="ydeY" /locus_tag="STM4075" /note="TM-ABC transporter signature motif [active]" /db_xref="CDD:119321" gene 4286075..4287084 /gene="ydeZ" /locus_tag="STM4076" /db_xref="GeneID:1255603" regulatory 4286075..4286080 /regulatory_class="ribosome_binding_site" /gene="ydeZ" /locus_tag="STM4076" /note="putative RBS for ydeZ; RegulonDB:STMS1H004003" CDS 4286083..4287084 /gene="ydeZ" /locus_tag="STM4076" /note="ABC superfamily (membrane); similar to E. coli putative transport system permease protein (AAC74588.1); Blastp hit to AAC74588.1 (330 aa), 83% identity in aa 4 - 326" /codon_start=1 /transl_table=11 /product="putative sugar transport protein" /protein_id="NP_462957.1" /db_xref="GeneID:1255603" /translation="MMNPWRRYSWEIALAALLIFEILAFGLINPRLLDINVLLFSTSD FICIGIVALPLTMVIVSGGMDISFGSTIGLCAITLGVLFQLGMPLPLAIIITLLLGAI CGLINAGLIIYTGVNPLVITLGTMYLFGGSALLLSGMAGATGYEGIGGFPTAFTDFAN ISFLGIPMPLIFFLVCCLFFWLLMHRTHMGRNVFLIGQSARVAQYSAIPVNRTLYTVY AMTGCASAIAAVLLVSYFGSARSDLGASFLMPAITAVVLGGANIYGGSGSIMGSALAA LLVGFLQQGLQMAGVPNQISSALSGALLIVVVVGRSVSLHRHQILEWYSRRRNAHQA" misc_feature 4286092..4287081 /gene="ydeZ" /locus_tag="STM4076" /note="autoinducer 2 ABC transporter permease LsrD; Region: PRK15038" /db_xref="CDD:184998" misc_feature 4286683..4286739 /gene="ydeZ" /locus_tag="STM4076" /note="TM-ABC transporter signature motif [active]" /db_xref="CDD:119321" gene 4287101..4288135 /gene="yneA" /locus_tag="STM4077" /db_xref="GeneID:1255604" regulatory 4287101..4287106 /regulatory_class="ribosome_binding_site" /gene="yneA" /locus_tag="STM4077" /note="putative RBS for yneA; RegulonDB:STMS1H004004" CDS 4287113..4288135 /gene="yneA" /locus_tag="STM4077" /note="ABC superfamily (peri_perm); similar to E. coli putative LACI-type transcriptional regulator (AAC74589.1); Blastp hit to AAC74589.1 (340 aa), 85% identity in aa 1 - 340" /codon_start=1 /transl_table=11 /product="putative sugar transport protein" /protein_id="NP_462958.1" /db_xref="GeneID:1255604" /translation="MARHSIKMIALLTAFGLASAAMTVQAAERIAFIPKLVGVGFFTS GGNGAQEAGKALGIDVTYDGPTEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPAL KRAMQRGVKILTWDSDTKPECRSYYINQGTPKQLGSMLVEMAAHQVDKEKAKVAFFYS SPTVTDQNQWVKEAKAKISQEHPGWEIVTTQFGYNDATKSLQTAEGIIKAYPDLDAII APDANALPAAAQAAENLKRNNLAIVGFSTPNVMRPYVQRGTVKEFGLWDVVQQGKISV YVANALLKNMPMNVGDSLDIPGIGKVTVSPNSEQGYHYEAKGNGIVLLPERVIFNKDN IDKYDF" misc_feature 4287128..4288132 /gene="yneA" /locus_tag="STM4077" /note="autoinducer 2 ABC transporter substrate-binding protein LsrB; Region: PRK15408" /db_xref="CDD:237961" gene 4288152..4289039 /gene="yneB" /locus_tag="STM4078" /db_xref="GeneID:1255605" regulatory 4288152..4288157 /regulatory_class="ribosome_binding_site" /gene="yneB" /locus_tag="STM4078" /note="putative RBS for yneB; RegulonDB:STMS1H004005" CDS 4288164..4289039 /gene="yneB" /locus_tag="STM4078" /note="similar to E. coli orf, hypothetical protein (AAC74590.1); Blastp hit to AAC74590.1 (291 aa), 89% identity in aa 1 - 290" /codon_start=1 /transl_table=11 /product="putative fructose-1,6-bisphosphate aldolase" /protein_id="NP_462959.1" /db_xref="GeneID:1255605" /translation="MADLDDIKDGKDFHTDKPQTNTLFALKGCGALDWGMQSRLARIF NPKTRKTVMLAFDHGYFQGPTTGLERIDINIAPLFEYADVLMCTRGILRSVVPPAINK PVVLRASGANSILTELSNEAVAVAMDDAVRLNSCAAAAQVYIGSEHEHQSIKNIIQLI DAGLRVGMPIMAVTGVGKDMARDQRYFSLATRIAAEMGAQIIKTYYVDKGFERIAAGC PVPIVIAGGKKLPEREALEMCYQAIDQGASGVDMGRNIFQSEDPVAMIKAVHAVVHHN ETAERAYELFLSEKS" misc_feature 4288245..4289033 /gene="yneB" /locus_tag="STM4078" /note="3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase; Region: PRK08227" /db_xref="CDD:181306" misc_feature order(4288812..4288814,4288821..4288823,4288884..4288892, 4288950..4288958) /gene="yneB" /locus_tag="STM4078" /note="putative active site; other site" /db_xref="CDD:188645" misc_feature 4288812..4288814 /gene="yneB" /locus_tag="STM4078" /note="catalytic residue [active]" /db_xref="CDD:188645" gene 4289071..4289412 /gene="yneC" /locus_tag="STM4079" /db_xref="GeneID:1255606" regulatory 4289071..4289076 /regulatory_class="ribosome_binding_site" /gene="yneC" /locus_tag="STM4079" /note="putative RBS for yneC; RegulonDB:STMS1H004006" CDS 4289083..4289412 /gene="yneC" /locus_tag="STM4079" /note="similar to E. coli orf, hypothetical protein (AAC74591.1); Blastp hit to AAC74591.1 (96 aa), 80% identity in aa 1 - 96" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462960.3" /db_xref="GeneID:1255606" /translation="MTVILFGIIRGLMMHVTLVEINVHDDKVEQFIDVFRQNHLGSIK EPGNLRFDVLQDPQVLTRFYIYEAYVDEQAVAFHKTTPHYKTCVEQLEPLMTGPRTKK VFMGLMP" misc_feature 4289122..4289409 /gene="yneC" /locus_tag="STM4079" /note="(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase; Region: PRK10486" /db_xref="CDD:182494" gene 4289415..4290186 /locus_tag="STM4080" /db_xref="GeneID:1255607" regulatory 4289415..4289420 /regulatory_class="ribosome_binding_site" /locus_tag="STM4080" /note="putative RBS for STM4080; RegulonDB:STMS1H004007" CDS 4289422..4290186 /locus_tag="STM4080" /note="similar to E. coli D-ribulose-5-phosphate 3-epimerase (AAC76411.1); Blastp hit to AAC76411.1 (225 aa), 26% identity in aa 1 - 217" /codon_start=1 /transl_table=11 /product="putative ribulose-5-phosphate 3-epimerase" /protein_id="NP_462961.1" /db_xref="GeneID:1255607" /translation="MNSQFAGLTREACVALLASYPLSVGILAGQWIALHRYLQQLEAL NQPLLHLDLMDGQFCPQFTVGPWAVGQLPQTFIKDVHLMVADQWTAAQACVKAGAHCI TLQAEGDIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQL LAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRV VSGSALFRDDRLVENTRSWRAMFKVAGDTTFLPSTA" misc_feature 4289422..4290183 /locus_tag="STM4080" /note="epimerase; Provisional; Region: PRK14057" /db_xref="CDD:172549" misc_feature order(4289494..4289496,4289500..4289502,4289575..4289577, 4289668..4289670,4289914..4289919,4289923..4289928, 4290016..4290018,4290022..4290024,4290082..4290087) /locus_tag="STM4080" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238244" misc_feature order(4289515..4289517,4289524..4289526,4289584..4289586, 4289590..4289595,4289599..4289601,4289605..4289616, 4289677..4289679,4289689..4289691,4289752..4289754, 4289758..4289763,4289842..4289844,4289851..4289853, 4289857..4289859,4289869..4289871,4289911..4289913, 4289938..4289940,4289944..4289946,4289956..4289958) /locus_tag="STM4080" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:238244" misc_feature order(4289569..4289571,4289575..4289577,4289662..4289664, 4290016..4290018) /locus_tag="STM4080" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:238244" gene complement(4290278..4291058) /gene="tpiA" /locus_tag="STM4081" /db_xref="GeneID:1255608" CDS complement(4290278..4291045) /gene="tpiA" /locus_tag="STM4081" /EC_number="5.3.1.1" /note="similar to E. coli triosephosphate isomerase (AAC76901.1); Blastp hit to AAC76901.1 (255 aa), 96% identity in aa 1 - 255" /codon_start=1 /transl_table=11 /product="triosephosphate isomerase" /protein_id="NP_462962.1" /db_xref="GeneID:1255608" /translation="MRHPLVMGNWKLNGSRHMVNELVANLRKELTGVAGCDVAIAPPE MYIDLAKRAAAGSHIMLGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYH KESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFE GAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKADAKIAEQVIIQYGGSVNASNA AELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA" misc_feature complement(4290293..4291042) /gene="tpiA" /locus_tag="STM4081" /note="triosephosphate isomerase; Provisional; Region: tpiA; PRK00042" /db_xref="CDD:234589" misc_feature complement(order(4290344..4290349,4290353..4290355, 4290410..4290412,4290527..4290529,4290545..4290547, 4290761..4290763,4291013..4291015,4291019..4291021)) /gene="tpiA" /locus_tag="STM4081" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238190" misc_feature complement(order(4290752..4290757,4290788..4290793, 4290800..4290802,4290854..4290856,4290893..4290895, 4290902..4290904,4290908..4290916,4291010..4291012, 4291019..4291021)) /gene="tpiA" /locus_tag="STM4081" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238190" misc_feature complement(order(4290545..4290547,4290761..4290763, 4291013..4291015)) /gene="tpiA" /locus_tag="STM4081" /note="catalytic triad [active]" /db_xref="CDD:238190" regulatory complement(4291053..4291058) /regulatory_class="ribosome_binding_site" /gene="tpiA" /locus_tag="STM4081" /note="putative RBS for tpiA; RegulonDB:STMS1H004008" gene complement(4291158..4291766) /gene="yiiQ" /locus_tag="STM4082" /db_xref="GeneID:1255609" CDS complement(4291158..4291754) /gene="yiiQ" /locus_tag="STM4082" /note="similar to E. coli orf, hypothetical protein (AAC76902.1); Blastp hit to AAC76902.1 (199 aa), 81% identity in aa 1 - 198" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462963.1" /db_xref="GeneID:1255609" /translation="MKPGCTLFLLLFSALTASITAHAQLSSSTTTAPYLLAGSPTFDL SISQFRENFNRQNPDLPLNEFRAIENSRDKANLTRAASKINENLYASTALERGTLKVK SMQITWLPIQGPEQKAAKAKALEYMAAIIRTVAPLLTKEQSQKKLQKMLIAGKGKHYY AETEGAVRYVVADNGEKGLTFAVEPIKLTLSENLEGAN" misc_feature complement(4291179..4291727) /gene="yiiQ" /locus_tag="STM4082" /note="Protein of unknown function (DUF1454); Region: DUF1454; pfam07305" /db_xref="CDD:429398" regulatory complement(4291761..4291766) /regulatory_class="ribosome_binding_site" /gene="yiiQ" /locus_tag="STM4082" /note="putative RBS for yiiQ; RegulonDB:STMS1H004009" gene 4291844..4292283 /gene="yiiR" /locus_tag="STM4083" /db_xref="GeneID:1255610" regulatory 4291844..4291849 /regulatory_class="ribosome_binding_site" /gene="yiiR" /locus_tag="STM4083" /note="putative RBS for yiiR; RegulonDB:STMS1H004010" CDS 4291855..4292283 /gene="yiiR" /locus_tag="STM4083" /note="similar to E. coli orf, hypothetical protein (AAC76903.1); Blastp hit to AAC76903.1 (146 aa), 90% identity in aa 1 - 141" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462964.1" /db_xref="GeneID:1255610" /translation="MTIQQWLFSFKGRIGRRDFWIWIGLWFAGMLALFSLAGKNLLDI QTAAFCLVCLLWPTAAVMVKRLHDRGRSGAWALLMILAWMLLAGNWVMLPGMWQWVVG RFIPTLILVMMLIDLGAFVGVQGENKFGKATQDVKFKAEP" misc_feature 4291855..4292247 /gene="yiiR" /locus_tag="STM4083" /note="Uncharacterized membrane protein YhaH, DUF805 family [Function unknown]; Region: yhaH; COG3152" /db_xref="CDD:442386" gene complement(4292390..4293148) /gene="fpr" /locus_tag="STM4084" /db_xref="GeneID:1255611" CDS complement(4292390..4293136) /gene="fpr" /locus_tag="STM4084" /EC_number="1.18.1.2" /note="similar to E. coli ferredoxin-NADP reductase (AAC76906.1); Blastp hit to AAC76906.1 (248 aa), 89% identity in aa 1 - 248" /codon_start=1 /transl_table=11 /product="ferredoxin-NADP reductase" /protein_id="NP_462965.1" /db_xref="GeneID:1255611" /translation="MADWVTGKVTKVQNWTDALFSLTVHAPINPFTAGQFTKLGLEID GERVQRAYSYVNAPDNPNLEFYLVTVPQGKLSPRLAALKPGDEVQVVSDASGFFVLDE VPDCETLWMLATGTAIGPYLSILQYGQDVARFKNLVLVHAARFAADLSYLPLMLELQQ RYEGKLRIQTVVSRENVPGSLTGRVPALIENGELEKAVGLPMDKETSHVMLCGNPQMV RDTQQLLKETRQMTKHLRRRPGHMTAEHYW" misc_feature complement(4292393..4293136) /gene="fpr" /locus_tag="STM4084" /note="ferredoxin-NADP reductase; Provisional; Region: PRK10926" /db_xref="CDD:182844" regulatory complement(4293143..4293148) /regulatory_class="ribosome_binding_site" /gene="fpr" /locus_tag="STM4084" /note="putative RBS for fpr; RegulonDB:STMS1H004011" gene complement(4293233..4294243) /gene="glpX" /locus_tag="STM4085" /db_xref="GeneID:1255612" CDS complement(4293233..4294243) /gene="glpX" /locus_tag="STM4085" /note="similar to E. coli unknown function in glycerol metabolism (AAC76907.1); Blastp hit to AAC76907.1 (336 aa), 94% identity in aa 1 - 336" /codon_start=1 /transl_table=11 /product="unknown function in glycerol metabolism" /protein_id="NP_462966.1" /db_xref="GeneID:1255612" /translation="MRRELAIEFSRVTEAAALAGYKWLGRGDKNTADGAAVNAMRIML NQVNIDGTIVIGEGEIDEAPMLYIGEKVGTGHGDAVDIAVDPIEGTRMTAMGQANALA VLAVGDKGCFLNAPDMYMEKLIVGPGAKGAIDLNLPLADNLRNIADALGKPLGDLTVT ILAKPRHDEVIAEMAKLGVRVFAIPDGDVAASILTCMPDSEVDVLYGIGGAPEGVVSA AVIRALDGDMQGRLLARHDVKGNSEENRRIGEQELARCKAMGIEAGKALCLGDMARSD NVIFSATGITKGDLLEGISRKGHIATTETLLIRGKSRTIRRIQSIHYLDRKDPDVQAH IL" misc_feature complement(4293278..4294240) /gene="glpX" /locus_tag="STM4085" /note="fructose-1,6-bisphosphatase, class II; Region: glpX; TIGR00330" /db_xref="CDD:129430" misc_feature complement(order(4293605..4293607,4293680..4293682, 4293977..4293991,4294073..4294078,4294145..4294147)) /gene="glpX" /locus_tag="STM4085" /note="putative active site [active]" /db_xref="CDD:238774" gene complement(4294355..4295876) /gene="glpK" /locus_tag="STM4086" /db_xref="GeneID:1255613" CDS complement(4294355..4295863) /gene="glpK" /locus_tag="STM4086" /EC_number="2.7.1.30" /note="similar to E. coli glycerol kinase (AAC76908.1); Blastp hit to AAC76908.1 (502 aa), 95% identity in aa 1 - 502" /codon_start=1 /transl_table=11 /product="glycerol kinase" /protein_id="NP_462967.1" /db_xref="GeneID:1255613" /translation="MTEKKYIVALDQGTTSSRAVVMDHDANIVSVSQREFEQIYPKPG WVEHDPMEIWASQSSTLVEVLAKADISSDQIAAIGITNQRETAIVWERETGKPIYNAI VWQCRRTADICEQLKRDGLEDYIRDNTGLVVDPYFSGTKVKWILDHVEGSRERAKRGE LLFGTVDTWLIWKMTQGRVHVTDYTNASRTMLFNIHDLDWDDKMLDVLDIPRAMLPQV RKSSEVYGQTNIGGKGGTRIPIAGIAGDQQAALFGQLCVKEGMAKNTYGTGCFMLMNT GEKAVKSENGLLITIACGPSGEVNYALEGAVFMAGASIQWLRDEMKLISDAFDSEYFA TKVKDTNGVYVVPAFTGLGAPYWDPYARGAIFGLTRGVNSNHIIRATLESIAYQTRDV LEAMQADSGIRLHALRVDGGAVANNFLMQFQSDILGTRVERPEVREVTALGAAYLAGL AVGYWQNLDELQEKAVIEREFRPGIETTERNYRYSGWKKAVKRAMAWEEHDK" misc_feature complement(4294370..4295863) /gene="glpK" /locus_tag="STM4086" /note="glycerol kinase GlpK; Region: glpK; PRK00047" /db_xref="CDD:234594" regulatory complement(4295871..4295876) /regulatory_class="ribosome_binding_site" /gene="glpK" /locus_tag="STM4086" /note="putative RBS for glpK; RegulonDB:STMS1H004012" gene complement(4295884..4296874) /gene="glpF" /locus_tag="STM4087" /db_xref="GeneID:1255614" CDS complement(4295884..4296729) /gene="glpF" /locus_tag="STM4087" /note="similar to E. coli facilitated diffusion of glycerol (AAC76909.1); Blastp hit to AAC76909.1 (281 aa), 92% identity in aa 1 - 281" /codon_start=1 /transl_table=11 /product="glycerol diffusion MIP channel" /protein_id="NP_462968.1" /db_xref="GeneID:1255614" /translation="MSQTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGATFGQWEI SVIWGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRKVVPFIISQVAGAFCAAA LVYGLYYNLFVDFEQTHHIVRGSVESLDLAGIFSTYPNPHINFVQAFAVEMVITAILM GLILALTDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGFAMNPARDFGPKMFAGLAG WGEIAFTGGRDIPYFLVPLFGPIVGAILGAFAYRKFIGRHLPCDTCVVEEKDSTATTQ QNASL" misc_feature complement(4295962..4296714) /gene="glpF" /locus_tag="STM4087" /note="Glycerol uptake facilitator or related aquaporin (Major Intrinsic protein Family) [Carbohydrate transport and metabolism]; Region: GlpF; COG0580" /db_xref="CDD:440345" regulatory complement(4296736..4296741) /regulatory_class="ribosome_binding_site" /gene="glpF" /locus_tag="STM4087" /note="putative RBS for glpF; RegulonDB:STMS1H004013" protein_bind complement(4296821..4296841) /gene="glpF" /locus_tag="STM4087" /note="putative binding site for GlpR, RegulonDB: STMS1H000207" /bound_moiety="GlpR" protein_bind complement(4296829..4296849) /gene="glpF" /locus_tag="STM4087" /note="putative binding site for CRP, RegulonDB: STMS1H000120" /bound_moiety="CRP" protein_bind complement(4296831..4296851) /gene="glpF" /locus_tag="STM4087" /note="putative binding site for GlpR, RegulonDB: STMS1H000204" /bound_moiety="GlpR" protein_bind complement(4296845..4296865) /gene="glpF" /locus_tag="STM4087" /note="putative binding site for GlpR, RegulonDB: STMS1H000202" /bound_moiety="GlpR" regulatory complement(4296847..4296855) /regulatory_class="minus_10_signal" /gene="glpF" /locus_tag="STM4087" /note="putative -10_signal for glpF; RegulonDB:STMLTH004644" protein_bind complement(4296853..4296873) /gene="glpF" /locus_tag="STM4087" /note="putative binding site for CRP, RegulonDB: STMS1H000110" /bound_moiety="CRP" regulatory complement(4296866..4296874) /regulatory_class="minus_35_signal" /gene="glpF" /locus_tag="STM4087" /note="putative -35_signal for glpF; RegulonDB:STMLTH004644" protein_bind complement(4296873..4296895) /note="putative binding site for GlpR, RegulonDB: STMS1H000208" /bound_moiety="GlpR" gene 4297112..4297367 /gene="yiiU" /locus_tag="STM4088" /db_xref="GeneID:1255615" regulatory 4297112..4297117 /regulatory_class="ribosome_binding_site" /gene="yiiU" /locus_tag="STM4088" /note="putative RBS for yiiU; RegulonDB:STMS1H004014" CDS 4297128..4297367 /gene="yiiU" /locus_tag="STM4088" /note="similar to E. coli orf, hypothetical protein (AAC76910.1); Blastp hit to AAC76910.1 (81 aa), 94% identity in aa 3 - 81" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462969.1" /db_xref="GeneID:1255615" /translation="MSLEVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLTQEVQSA QHQREELERENNSLKEQQSGWQERLQALLGRMEEV" misc_feature 4297128..4297364 /gene="yiiU" /locus_tag="STM4088" /note="septal ring assembly protein ZapB; Provisional; Region: PRK15422" /db_xref="CDD:185320" gene complement(4297589..4298074) /gene="menG" /locus_tag="STM4089" /db_xref="GeneID:1255616" CDS complement(4297589..4298074) /gene="menG" /locus_tag="STM4089" /EC_number="2.1.1.-" /note="similar to E. coli menaquinone biosynthesis, unknown (AAC76911.1); Blastp hit to AAC76911.1 (161 aa), 97% identity in aa 1 - 161" /codon_start=1 /transl_table=11 /product="putative methyltransferase in menaquinone biosynthesis protein" /protein_id="NP_462970.1" /db_xref="GeneID:1255616" /translation="MKYDTSELCDIYQEDVNVVEPLFSNFGGRSSFGGQIITVKCFED NGLLYDLLEQNGRGRVLLVDGGGSVRRALVDAELARLATQNEWEGLVIYGAVRQVDDL EELDIGIQAIAAIPVGAAGEGIGESDVRVNFGGVTFFSGDHLYADNTGIILSEDPLDI E" misc_feature complement(4297598..4298074) /gene="menG" /locus_tag="STM4089" /note="ribonuclease E inhibitor RraA; Region: PRK09372" /db_xref="CDD:236487" gene complement(4298167..4299108) /gene="menA" /locus_tag="STM4090" /db_xref="GeneID:1255617" CDS complement(4298167..4299096) /gene="menA" /locus_tag="STM4090" /EC_number="2.5.1.-" /note="similar to E. coli 1,4-dihydroxy-2-naphthoate --> dimethylmenaquinone (AAC76912.1); Blastp hit to AAC76912.1 (308 aa), 94% identity in aa 1 - 307" /codon_start=1 /transl_table=11 /product="1,4-dihydroxy-2-naphthoate octaprenyltransferase" /protein_id="NP_462971.1" /db_xref="GeneID:1255617" /translation="MTEQQQISRTQAWLESLRPKTLPLAFAAIIVGTALAWWQGYFDP LVALLALITAGLLQILSNLANDYGDAVKGSDKPDRIGPLRGMQKGVITRQEMKRALII TVVLICISGLALVAVACHTLTDFVGFLILGGLSIIAAITYTVGNRPYGYIGLGDISVL VFFGWLSVMGSWYLQAHTLIPALILPATACGLLATAVLNINNLRDINSDRENGKNTLV VRLGDVNARRYHACLLLGALLCLALFNLLSLHSPWGWLFILAAPLLIKQARYVMRERE PAAMRPMLERTVKGALLTNLLFVIGILLSQWAV" misc_feature complement(4298194..4299045) /gene="menA" /locus_tag="STM4090" /note="1,4-dihydroxy-2-naphthoate octaprenyltransferase; Region: menA; TIGR00751" /db_xref="CDD:129834" regulatory complement(4299103..4299108) /regulatory_class="ribosome_binding_site" /gene="menA" /locus_tag="STM4090" /note="putative RBS for menA; RegulonDB:STMS1H004015" gene complement(4299163..4300505) /gene="hslU" /locus_tag="STM4091" /db_xref="GeneID:1255618" CDS complement(4299163..4300494) /gene="hslU" /locus_tag="STM4091" /note="ATP-dependent HAL protease ATP-binding subunit HSLU (heat shock protein HSLU). (SW:HSLU_SALTY)" /codon_start=1 /transl_table=11 /product="ATPase component of the HslUV protease" /protein_id="NP_462972.1" /db_xref="GeneID:1255618" /translation="MSEMTPREIVSELNKHIIGQDNAKRSVAIALRNRWRRMQLDEEL RHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRD LTDAAVKMVRVQAIEKNRYRAEELAEERILDVLIPPAKNNWGQAEQQQEPSAARQTFR KKLREGQLDDKEIEINLAAAPMGVEIMAPPGMEEMTSQLQSMFQNLGGQKQKPRKLKI KDAMKLLVEEEAAKLVNPEELKQDAIDAVEQHGIVFIDEIDKICKRGETSGPDVSREG VQRDLLPLVEGCTVSTKHGMVKTDHILFIASGAFQVAKPSDLIPELQGRLPIRVELQA LTTSDFERILTEPNASVTVQYKALMATEGVNIEFTDSGIKRIAEAAWQVNETTENIGA RRLHTVLERLMEEISYNASDLHGQNITIDAEYVSKHLDALVADEDLSRFIL" misc_feature complement(4299166..4300494) /gene="hslU" /locus_tag="STM4091" /note="ATP-dependent protease ATPase subunit HslU; Region: hslU; PRK05201" /db_xref="CDD:235364" regulatory complement(4300500..4300505) /regulatory_class="ribosome_binding_site" /gene="hslU" /locus_tag="STM4091" /note="putative RBS for hslU; RegulonDB:STMS1H004016" gene complement(4300504..4301047) /gene="hslV" /locus_tag="STM4092" /db_xref="GeneID:1255619" CDS complement(4300504..4301034) /gene="hslV" /locus_tag="STM4092" /note="similar to E. coli heat shock protein hslVU, proteasome-related peptidase subunit (AAC76914.1); Blastp hit to AAC76914.1 (176 aa), 97% identity in aa 1 - 176" /codon_start=1 /transl_table=11 /product="peptidase component of the HslUV protease" /protein_id="NP_462973.1" /db_xref="GeneID:1255619" /translation="MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVI AGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADET ASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELGAREIAEKALDIAGDIC IYTNHFHTIEELTAKA" misc_feature complement(4300519..4301034) /gene="hslV" /locus_tag="STM4092" /note="ATP-dependent protease subunit HslV; Region: PRK05456" /db_xref="CDD:235477" misc_feature complement(order(4300660..4300662,4300933..4300935, 4300975..4300977,4300981..4300983,4301029..4301031)) /gene="hslV" /locus_tag="STM4092" /note="active site" /db_xref="CDD:238894" misc_feature complement(order(4300552..4300554,4300558..4300563, 4300570..4300572,4300582..4300584,4300615..4300617, 4300639..4300641,4300648..4300653,4300690..4300692, 4300702..4300704,4300783..4300785,4300954..4300962)) /gene="hslV" /locus_tag="STM4092" /note="HslU subunit interaction site [polypeptide binding]; other site" /db_xref="CDD:238894" regulatory complement(4301042..4301047) /regulatory_class="ribosome_binding_site" /gene="hslV" /locus_tag="STM4092" /note="putative RBS for hslV; RegulonDB:STMS1H004017" gene complement(4301126..4302100) /gene="ftsN" /locus_tag="STM4093" /db_xref="GeneID:1255620" CDS complement(4301126..4302100) /gene="ftsN" /locus_tag="STM4093" /note="similar to E. coli essential cell division protein (AAC76915.1); Blastp hit to AAC76915.1 (319 aa), 82% identity in aa 1 - 319" /codon_start=1 /transl_table=11 /product="essential cell division protein" /protein_id="NP_462974.1" /db_xref="GeneID:1255620" /translation="MAQRDYVRRGQPAPSRRKKSTSRNSRKKQSNMPAVSPAMVAIAA AVLVTFIGGLYFITHHKKEESETLQNQKVTGNGLPPKPEERWRYIKELESRQPGVRTP TEPSAGGEVMNPNQLTSEQRQLLEQMQADMRQQPTQLNEVPWNEQTPEQRQQTLQRQR QAQQQQWAQTQPVQQPRTQPRVNEQPQTRTVQSAPAQPARQSQPPKQTASQQPYQDLL QTPAHTSAAAPKAAPITRAPEAPKATAEKKDERRWMVQCGSFKGAEQAESVRAQLAFE GFDSKITTNNGWNRVVIGPVKGKENADSTINRLKMAGHTNCIRLATGG" misc_feature complement(4301129..4302100) /gene="ftsN" /locus_tag="STM4093" /note="cell division protein FtsN; Region: PRK10927" /db_xref="CDD:236797" gene complement(4302194..4303230) /gene="cytR" /locus_tag="STM4094" /db_xref="GeneID:1255621" CDS complement(4302194..4303219) /gene="cytR" /locus_tag="STM4094" /note="similar to E. coli regulator for deo operon, udp, cdd, tsx, nupC, and nupG (AAC76916.1); Blastp hit to AAC76916.1 (341 aa), 86% identity in aa 1 - 341" /codon_start=1 /transl_table=11 /product="GalR/LacI family transcriptional repressor" /protein_id="NP_462975.1" /db_xref="GeneID:1255621" /translation="MKSNKQVTAATMKDVALKAKVSTATVSRALMNPDKVSQSTRSRV EQAALEVGYFPQSMGRNVKRNESRTILVIVPDICDPFFSEIIRGIEVTAAEQGYLVLI GDCAHQNQKEKTFLNLIITKQIDGMVLLSSRLPFDASVEEQRNLPPMVMSNEFAPELE LPTVHIDNLTAAFNAMNYLLDLGHKRIGCIAGPEDMPLCHYRLQGYVQALRRSGIVVD PHYIARGDFTFEAGANALKQLLEQPLPPTAVFCHSDVMALGALSWAKRQGLKVPDDLS IIGFDNIALAEFCDPPLTTVAQPRFDIGREAMLLLLDQMQGQNVSSGSRLMDCELIIR GSTRALP" misc_feature complement(4302197..4303123) /gene="cytR" /locus_tag="STM4094" /note="DNA-binding transcriptional regulator CytR; Provisional; Region: PRK11041" /db_xref="CDD:182923" regulatory complement(4303225..4303230) /regulatory_class="ribosome_binding_site" /gene="cytR" /locus_tag="STM4094" /note="putative RBS for cytR; RegulonDB:STMS1H004018" gene complement(4303374..4305584) /gene="priA" /locus_tag="STM4095" /db_xref="GeneID:1255622" CDS complement(4303374..4305572) /gene="priA" /locus_tag="STM4095" /note="directs replication fork assembly at D-loops; similar to E. coli primosomal protein N'(= factor Y)(putative helicase) (AAC76917.1); Blastp hit to AAC76917.1 (732 aa), 90% identity in aa 1 - 732" /codon_start=1 /transl_table=11 /product="factor Y" /protein_id="NP_462976.1" /db_xref="GeneID:1255622" /translation="MSVAHVALPVPLPRTFDYLLPEGGVAKAGCRVRVPFGKQQERVG IVVSISDHSELPLDELKSVIEILDNEPIFSPSIWRLLLWAADYYHHPLGDVLFHALPV LLRQGKPASNAPLWYWFATEEGQAVDINSLKRSAKQQQALAALRQGKIWRYQVAELDF TDATLQTLRRKGLCELASETPAFTDWRERYAVAGERLRLNTEQATAVGAIHSASDGFS AWLLAGVTGSGKTEVYLSVLENVLAQGKQALVMVPEIGLTPQTIARFRERFNAPVEVL HSGLNDSERLSAWLKAKNGEAAIVIGTRSSLFTPFKNLGVIVIDEEHDSSYKQQEGWR YHARDLAVYRAHSEQIPIILGSATPALETLCNVRQKKYRMLRLTRRAGNARPALQHVL DLKGQRLQAGLAPALIARMRQHLQADNQVILFLNRRGFAPALLCHDCGWIAECPRCDH YYTLHQAQHHLRCHHCDSQRPVPRQCPSCGSTHMLPVGLGTEQLEQVLAPFFPGVPIS RIDRDTTSRKGALEQHLAEVHRGGARILIGTQMLAKGHHFPDVTLVALLDVDGALFSA DFRSAERFAQLYTQVSGRAGRAGKQGEVVLQTHHPEHPLLQTLLYKGYDAFAEQALAE RQTLQLPPWTSHVIIRAEDHNNQQAPVFLQQLRNLIQASPLSDDKLWILGPVPALAPK RGGRYRWQILLQHPSRIRLQHIISGTLALINTLPEARKVKWVLDVDPIEG" misc_feature complement(4303380..4305572) /gene="priA" /locus_tag="STM4095" /note="Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]; Region: PriA; COG1198" /db_xref="CDD:440811" regulatory complement(4305579..4305584) /regulatory_class="ribosome_binding_site" /gene="priA" /locus_tag="STM4095" /note="putative RBS for priA; RegulonDB:STMS1H004019" gene 4305766..4305988 /gene="rpmE" /locus_tag="STM4096" /db_xref="GeneID:1255623" regulatory 4305766..4305771 /regulatory_class="ribosome_binding_site" /gene="rpmE" /locus_tag="STM4096" /note="putative RBS for rpmE; RegulonDB:STMS1H004020" CDS 4305776..4305988 /gene="rpmE" /locus_tag="STM4096" /note="similar to E. coli 50S ribosomal subunit protein L31 (AAC76918.1); Blastp hit to AAC76918.1 (70 aa), 82% identity in aa 1 - 70" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L31" /protein_id="NP_462977.1" /db_xref="GeneID:1255623" /translation="MKKGIHPNYVEITATCSCGNVIKTHSTVGHDLNLDVCGKCHPFF TGKQRVVDTGGRVERFNKRFSIPGSK" misc_feature 4305776..4305985 /gene="rpmE" /locus_tag="STM4096" /note="50S ribosomal protein L31; Reviewed; Region: rpmE; PRK00019" /db_xref="CDD:234576" gene complement(4306034..4306702) /locus_tag="STM4097" /db_xref="GeneID:1255624" CDS complement(4306034..4306696) /locus_tag="STM4097" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_462978.1" /db_xref="GeneID:1255624" /translation="MKNLFIAWISLLLYGCTTFPQAVKPTTGGQPSPTEIYIVSHGWH TGIIAPAHDVNTVLPQLKKRFAQETQWYEIGWGDKGFYQSQEITTALTLQAMFWSSGA VMHIVAFSGQPERYFVGSEIKSLLLHTNQRNSLMRYLGRSFARDEGGNLIPLKQGIYG DSQFYAANGRYGILNTCNKWTAKGLESAGLTINPSLKLTAGSVMKAITDHRMCLNKYC YP" misc_feature complement(4306079..4306684) /locus_tag="STM4097" /note="conserved hypothetical protein; Region: chp_urease_rgn; TIGR02117" /db_xref="CDD:273979" regulatory complement(4306697..4306702) /regulatory_class="ribosome_binding_site" /locus_tag="STM4097" /note="putative RBS for STM4097; RegulonDB:STMS1H004021" gene complement(4306897..4308692) /locus_tag="STM4098" /db_xref="GeneID:1255625" CDS complement(4306897..4308687) /locus_tag="STM4098" /codon_start=1 /transl_table=11 /product="putative arylsulfate sulfotransferase" /protein_id="NP_462979.1" /db_xref="GeneID:1255625" /translation="MLFTRKVLPVLCCLCLSGSVLASGVLDPNRPMVASADVIPVHEG PLGMVDVAPYGGVFPLTAIINKANHNVQDVKVTVLGKGEKGIPISYDVGPQAINTHDG IPVFGLYPDYVNKVKVDWTEEGKKQTYTWSIYAAPVSLPSTTGQTAVLPTVEPVKVDS SLKNRLYLFNHITGMPRAGHIMHVAGGAANWDYTGINWISDTNGDVRGYMNIDKFRNQ DDITRFGSMMGFHQVNDGNLMFGQGQRYFKYDFLGRVISDKRLPKGFIDFSHAITETP KGTYLLRVAKENYPLNGKYTINTVRDHILEVDQNGDTVDYWDLPKILDPYRDDVILAM DQGAVCLSVDAEHSGQVMTKEQLAKQPFGDIAGSGPGRNWAHVNSVSYDPRDDSIIIS SRHQSAIIKIGRDKKVKWILSDPSGWKGELAKKVLKPVDSNGKPLTCEAHHCDGGFDW TWTQHTGWLVPSKSTGGKTVVTAFDNGDARGMEQPAMPSMKYSRGVEYQIDEKNMTVS QMWEYGKERGFDWYSAITSVTEYRPETKTMFMYSATAGMSGTKPIVSVLDEVKDGTQD VMLELKVHSNRAGMLGYRALIIDPEQMFKK" misc_feature complement(4308280..4308546) /locus_tag="STM4098" /note="Arylsulfotransferase Ig-like domain; Region: Arylsulfotran_N; pfam17425" /db_xref="CDD:407495" misc_feature complement(4306936..4308231) /locus_tag="STM4098" /note="Arylsulfotransferase (ASST); Region: Arylsulfotrans; pfam05935" /db_xref="CDD:399139" regulatory complement(4308687..4308692) /regulatory_class="ribosome_binding_site" /locus_tag="STM4098" /note="putative RBS for STM4098; RegulonDB:STMS1H004022" gene complement(4309144..4309477) /gene="metJ" /locus_tag="STM4099" /db_xref="GeneID:1255626" CDS complement(4309144..4309461) /gene="metJ" /locus_tag="STM4099" /note="MetJ family; met repressor (met regulon regulatory protein METJ). (SW:METJ_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional repressor of all met genes but metF" /protein_id="NP_462980.1" /db_xref="GeneID:1255626" /translation="MAEWSGEYISPYAEHGKKSEQVKKITVSIPLKVLKILTDERTRR QVNNLRHATNSELLCEAFLHAFTGQPLPDDADLRKERSDEIPEAAKEIMRELGIDPET WEY" misc_feature complement(4309147..4309461) /gene="metJ" /locus_tag="STM4099" /note="met regulon transcriptional regulator MetJ; Region: PRK05264" /db_xref="CDD:179982" misc_feature complement(order(4309249..4309251,4309264..4309272, 4309276..4309281,4309285..4309290,4309297..4309299, 4309342..4309344,4309351..4309356,4309360..4309365, 4309369..4309404,4309423..4309425,4309429..4309434)) /gene="metJ" /locus_tag="STM4099" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:119402" misc_feature complement(order(4309297..4309305,4309339..4309341, 4309378..4309380,4309384..4309398,4309408..4309410)) /gene="metJ" /locus_tag="STM4099" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:119402" misc_feature complement(order(4309246..4309251,4309258..4309260, 4309264..4309272,4309276..4309284,4309291..4309293, 4309330..4309335,4309342..4309344)) /gene="metJ" /locus_tag="STM4099" /note="corepressor binding sites [active]" /db_xref="CDD:119402" regulatory complement(4309472..4309477) /regulatory_class="ribosome_binding_site" /gene="metJ" /locus_tag="STM4099" /note="putative RBS for metJ; RegulonDB:STMS1H004023" gene 4309711..4310886 /gene="metB" /locus_tag="STM4100" /db_xref="GeneID:1255627" regulatory 4309711..4309716 /regulatory_class="ribosome_binding_site" /gene="metB" /locus_tag="STM4100" /note="putative RBS for metB; RegulonDB:STMS1H004024" CDS 4309726..4310886 /gene="metB" /locus_tag="STM4100" /EC_number="2.5.1.48" /note="similar to E. coli cystathionine gamma-synthase (AAC76921.1); Blastp hit to AAC76921.1 (386 aa), 96% identity in aa 1 - 386" /codon_start=1 /transl_table=11 /product="cystathionine gamma-synthase" /protein_id="NP_462981.1" /db_xref="GeneID:1255627" /translation="MTRKQATIAVRSGLNDDEQYGCVVPPIHLSSTYNFTGFNEPRAH DYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVFLKPGDLLVAPHDCYG GSYRLFDSLATRGCYRVRFVDQGDERALQAALEEKPKLVLVESPSNPLLRVVDIAKIC RLAREAGAVSVVDNTFLSPALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPEV VTELAWWANNIGVTGGAFDSYLLLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLY HPSLPENQGHEIAARQQKGFGAMLSFELDGDEETLRRFLGGLSLFTLAESLGGVESLI SHAATMTHAGMSPQARASAGISETLLRISTGIEDGEDLIADLENGFRAANKG" misc_feature 4309726..4310883 /gene="metB" /locus_tag="STM4100" /note="cystathionine gamma-synthase; Provisional; Region: PRK08045" /db_xref="CDD:169194" misc_feature order(4309810..4309821,4309825..4309830,4309861..4309863, 4309867..4309869,4309945..4309950,4309954..4309959, 4310026..4310028,4310041..4310043,4310050..4310052, 4310314..4310316,4310338..4310340,4310344..4310346, 4310395..4310397,4310425..4310427,4310431..4310436, 4310671..4310673) /gene="metB" /locus_tag="STM4100" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99738" misc_feature order(4309948..4309956,4310026..4310028,4310155..4310157, 4310242..4310244,4310308..4310310,4310314..4310319, 4310344..4310346) /gene="metB" /locus_tag="STM4100" /note="substrate-cofactor binding pocket [active]" /db_xref="CDD:99738" misc_feature order(4309948..4309956,4310026..4310028,4310242..4310244, 4310251..4310253,4310308..4310310,4310314..4310319) /gene="metB" /locus_tag="STM4100" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99738" misc_feature 4310317..4310319 /gene="metB" /locus_tag="STM4100" /note="catalytic residue [active]" /db_xref="CDD:99738" gene 4310878..4313321 /gene="metL" /locus_tag="STM4101" /db_xref="GeneID:1255628" regulatory 4310878..4310883 /regulatory_class="ribosome_binding_site" /gene="metB" /locus_tag="STM4100" /note="putative RBS for metL; RegulonDB:STMS1H004025" CDS 4310889..4313321 /gene="metL" /locus_tag="STM4101" /EC_number="1.1.1.3" /EC_number="2.7.2.4" /note="bifunctional; similar to E. coli aspartokinase II and homoserine dehydrogenase II (AAC76922.1); Blastp hit to AAC76922.1 (810 aa), 94% identity in aa 1 - 810" /codon_start=1 /transl_table=11 /product="aspartokinase II" /protein_id="NP_462982.1" /db_xref="GeneID:1255628" /translation="MSVIAQAGAKGRQLHKFGGSSLADVKCYLRVAGIMAEYSQPDDM MVVSAAGSTTNQLISWLKLSQTDRLSAHQVLQTLRRYQCDLISGLLPADAADDLTSAF ISDLERLAALLDGGVTDAVYAEIVGHGEIWSARLMSAVLNQQGLDAAWLDARAFLRAE RAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNHDGETVLLGRNGSDYSATQIG ALAGVSRVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPV SGSDIDLQLRCSYTPDQGSTRIERVLASGTGARIVTSHDDICLIEFQVPASQDFRLAH KELDHILKRAQVRPLAVGVHRDRQLLQFCYTAEVADSVLKLLDDVGLPGELRLRQGLA LVAMVGAGVTRNPLHCHRFWQQLKGQPVEFTWQSEEGISLVAVLRTGPTESLIQGLHQ SVFRAEKRIGLMLFGKGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLNYE GLDASRALAFFDDEAVEQDEESLFLWMRAHPYDDLVVLDVTASAQLADQYLDFASHGF HVISANKLAGASASDKYRQIHDAFEKTGRYWLYNATVGAGLPINHTVRDLIDSGDTIL SISGIFSGTLSWLFLQFDGTVPFTDLVDQAWQQGLTEPDPRVDLSGKDVMRKLVILAR EAGYDIEPDQVRVESLVPAHCEEGSIDHFFENGDALNEQMVQRLEAARELGLVLRYVA RFDANGKARVGVEAVRPEHPLAALLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGA IQSDINRLAQLL" misc_feature 4310889..4313318 /gene="metL" /locus_tag="STM4101" /note="bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional; Region: metL; PRK09466" /db_xref="CDD:236530" gene complement(4313437..4314301) /locus_tag="STM4102" /db_xref="GeneID:1255629" CDS complement(4313437..4314294) /locus_tag="STM4102" /note="similar to E. coli putative transport protein (AAC75961.1); Blastp hit to AAC75961.1 (286 aa), 54% identity in aa 1 - 281" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_462983.1" /db_xref="GeneID:1255629" /translation="MEGFELFPKIKGAIKWMAEHSDSVIHFGWNVVAAIILLFIGKLI ARLLSRGLEKLLLRRQVDATIVHFFSALVRYITIAFTAVAALGRVGIETSSIIAVIGA AGLAIGLALQGSLSNFAAGVLLVSLRPFRAGEIVQIGLVIGTVEKVHIFSTTLLTADS KEVVIPNGKIIADNIINYSRHPYRRIDLIIGVDYQSRIADVKNVIHRIIEQDHRIDKT RDITVRLGELAPSSLNFYVRVWVPNAQYWSTYYDLLENIKEAMDENGINIPYPRMDVR VENVKSITP" misc_feature complement(4313452..4314294) /locus_tag="STM4102" /note="mechanosensitive channel MscK; Region: PRK11281; cl46976" /db_xref="CDD:481316" regulatory complement(4314296..4314301) /regulatory_class="ribosome_binding_site" /locus_tag="STM4102" /note="putative RBS for STM4102; RegulonDB:STMS1H004026" gene complement(4315530..4316658) /locus_tag="STM4103" /db_xref="GeneID:1255630" CDS complement(4315530..4316654) /locus_tag="STM4103" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_462984.1" /db_xref="GeneID:1255630" /translation="MPPLFTINACKSAGCRNLGLPDSPDYVWPDYRLGYPALHCRACG SYPPLFNEGEFRRWASAYIAQYAKEHGHFCPDCYQKTWIRYGRNPGGTQRLQCQYCKK VWTPKQHALNVAETPEQICSIPLLVPFQGANAFQQLYFLFSFDAVRGNILHLSSNFTL LSAGKSLHYHWKGIAPPEGEKGDIIHRIAIKERQFLQRSQFDEIQYGPAALKRNAQGT ILRPVITAHGHFRVLKNRFPDVATHIIAHECFLRGAVITAWAERFRQRLSSLWFVEEE INDDDCRAEWQLLGKTWQGWWQNQWQLWGQGHNRKMVCSLTGSHLEQGVAVNLAASRR FVTWLWQQPEFQQSAHYSAKRVTQILYFLTEKYNSQWNHI" regulatory complement(4316653..4316658) /regulatory_class="ribosome_binding_site" /locus_tag="STM4103" /note="putative RBS for STM4103; RegulonDB:STMS1H004027" gene 4316785..4318346 /locus_tag="STM4104" /db_xref="GeneID:1255631" regulatory 4316785..4316790 /regulatory_class="ribosome_binding_site" /locus_tag="STM4104" /note="putative RBS for STM4104; RegulonDB:STMS1H004028" CDS 4316790..4318346 /locus_tag="STM4104" /note="related esterase; similar to E. coli UDP-sugar hydrolase (5'-nucleotidase) (AAC73582.1); Blastp hit to AAC73582.1 (550 aa), 25% identity in aa 34 - 253, 28% identity in aa 383 - 506; putative 5'-nucleotidase" /codon_start=1 /transl_table=11 /product="2',3'-cyclic phosphodiesterase" /protein_id="NP_462985.1" /db_xref="GeneID:1255631" /translation="MKVKLLAAGILFTLPFWACAKDVTIIYTNDLHAHVEPYKVPWIA DGKRDIGGWANITTLVKQEKAKNKATWFFDAGDYFTGPYISSLTKGKAIIDILNTMQY DAATIGNHEFDHGWDNTLLQLSRAKFPIVQGNIFYEDSSKSFWDKPYTIVEKDGVKIG VIGLHGVFAFNDTVSAATRVGIEARDEIKWLQRYIDELKGKVDLTVALIHEGTPARQS SMGNTDVRRALDKDIQTASQVKGLDILITGHAHVGTPEPIKVGNTLILSTDSGGIDVG KLVLDYKEKPHHFTVKNFELKTIFADEWKPDPQTKQVIDGWNKKLDKVVQQTVAQSPV ELTRAYGESSSLGNLAADALLFTAGKDTQLALTNSGGIRNEIPAGAVTMGAVISTFPF PNELVTMDLTGKQLRSLMEHGAGLSNGVLQVSKGLEMKYDSSKPIGQRVTVLTLNGKP IDDATVYHIATNSFLADGGDGFAAFTEGQARNTSGGYYVSNAIVDYFKAGNTITDEQL KGMRVADVKK" misc_feature 4316847..4318286 /locus_tag="STM4104" /note="2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'- or 3'-nucleotidase, 5'-nucleotidase family [Nucleotide transport and metabolism, Defense mechanisms]; Region: UshA; COG0737" /db_xref="CDD:440500" gene 4318378..4319431 /gene="metF" /locus_tag="STM4105" /db_xref="GeneID:1255632" regulatory 4318378..4318386 /regulatory_class="minus_35_signal" /gene="metF" /locus_tag="STM4105" /note="putative -35_signal for metF; RegulonDB:STMLTH004645" regulatory 4318405..4318413 /regulatory_class="minus_10_signal" /gene="metF" /locus_tag="STM4105" /note="putative -10_signal for metF; RegulonDB:STMLTH004645" protein_bind 4318465..4318473 /gene="metF" /locus_tag="STM4105" /note="putative binding site for MetJ, RegulonDB: STMS1H000285" /bound_moiety="MetJ" protein_bind 4318481..4318489 /gene="metF" /locus_tag="STM4105" /note="putative binding site for MetJ, RegulonDB: STMS1H000288" /bound_moiety="MetJ" protein_bind 4318495..4318503 /gene="metF" /locus_tag="STM4105" /note="putative binding site for MetJ, RegulonDB: STMS1H000284" /bound_moiety="MetJ" regulatory 4318531..4318536 /regulatory_class="ribosome_binding_site" /gene="metF" /locus_tag="STM4105" /note="putative RBS for metF; RegulonDB:STMS1H004029" CDS 4318541..4319431 /gene="metF" /locus_tag="STM4105" /note="5,10-methylenetetrahydrofolate reductase. (SW:METF_SALTY)" /codon_start=1 /transl_table=11 /product="5,10-methylenetetrahydrofolate reductase" /protein_id="NP_462986.1" /db_xref="GeneID:1255632" /translation="MSFFHANQREALNQSLAEVQGQINVSFEFFPPRTSEMEQTLWNS IDRLSSLKPKFVSVTYGANSGERDRTHSVIKGIKERTGLEAAPHLTCIDATRDELRTI ARDYWNNGIRHIVALRGDLPPGSGKPEMYAADLVGLLKEVADFDISVAAYPEVHPEAK SAQADLLNLKRKVDAGANRAITQFFFDVESYLRFRDRCVSAGIDVEIIPGILPVSNFK QAKKFADMTNVRIPSWMSLMFEGLDNDAETRKLVGANIAMDMVKILSREGVKDFHFYT LNRAEMSYAICHTLGVRPGL" misc_feature 4318541..4319428 /gene="metF" /locus_tag="STM4105" /note="methylenetetrahydrofolate reductase; Region: metF; PRK09432" /db_xref="CDD:181852" misc_feature order(4318718..4318720,4318802..4318804,4318889..4318897, 4318931..4318936,4318988..4318990,4318994..4318996, 4319006..4319008,4319012..4319014,4319033..4319035, 4319042..4319044,4319051..4319056,4319081..4319083, 4319087..4319089,4319363..4319365) /gene="metF" /locus_tag="STM4105" /note="FAD binding site [chemical binding]; other site" /db_xref="CDD:238299" gene 4319437..4321776 /gene="katG" /locus_tag="STM4106" /db_xref="GeneID:1255633" regulatory 4319437..4319445 /regulatory_class="minus_35_signal" /gene="katG" /locus_tag="STM4106" /note="putative -35_signal for katG; RegulonDB:STMLTH004646" regulatory 4319464..4319472 /regulatory_class="minus_10_signal" /gene="katG" /locus_tag="STM4106" /note="putative -10_signal for katG; RegulonDB:STMLTH004646" regulatory 4319582..4319587 /regulatory_class="ribosome_binding_site" /gene="katG" /locus_tag="STM4106" /note="putative RBS for katG; RegulonDB:STMS1H004030" CDS 4319596..4321776 /gene="katG" /locus_tag="STM4106" /EC_number="1.11.1.6" /note="peroxidase/catalase HPI. (SW:CATA_SALTY)" /codon_start=1 /transl_table=11 /product="catalase; hydroperoxidase HPI(I)" /protein_id="NP_462987.1" /db_xref="GeneID:1255633" /translation="MSTTDDTHNTLSTGKCPFHQGGHDRSAGAGTASRDWWPNQLRVD LLNQHSNRSNPLGEDFDYRKEFSKLDYSALKGDLKALLTDSQPWWPADWGSYVGLFIR MAWHGAGTYRSIDGRGGAGRGQQRFAPLNSWPDNVSLDKARRLLWPIKQKYGQKISWA DLFILAGNVALENSGFRTFGFGAGREDVWEPDLDVNWGDEKAWLTHRHPEALAKAPLG ATEMGLIYVNPEGPDHSGEPLSAAAAIRATFGNMGMNDEETVALIAGGHTLGKTHGAA AASHVGADPEAAPIEAQGLGWASSYGSGVGADAITSGLEVVWTQTPTQWSNYFFENLF KYEWVQTRSPAGAIQFEAVDAPDIIPDPFDPSKKRKPTMLVTDLTLRFDPEFEKISRR FLNDPQAFNEAFARAWFKLTHRDMGPKARYIGPEVPKEDLIWQDPLPQPLYQPTQEDI INLKAAIAASGLSISEMVSVAWASASTFRGGDKRGGANGARLALAPQRDWDVNAVAAR VLPVLEEIQKTTNKASLADIIVLAGVVGIEQAAAAAGVSISVPFAPGRVDARQDQTDI EMFSLLEPIADGFRNYRARLDVSTTESLLIDKAQQLTLTAPEMTVLVGGMRVLGTNFD GSQNGVFTDRPGVLSTDFFANLLDMRYEWKPTDDANELFEGRDRLTGEVKYTATRADL VFGSNSVLRALAEVYACSDAHEKFVKDFVAAWVKVMNLDRFDLQ" misc_feature 4319629..4321773 /gene="katG" /locus_tag="STM4106" /note="catalase/peroxidase; Region: PRK15061" /db_xref="CDD:237891" misc_feature order(4319887..4319892,4319896..4319901,4319908..4319910, 4320274..4320282,4320340..4320342,4320379..4320384, 4320391..4320396,4320400..4320417,4320715..4320717, 4320721..4320723,4320805..4320807,4320817..4320819) /gene="katG" /locus_tag="STM4106" /note="heme binding site [chemical binding]; other site" /db_xref="CDD:173823" gene complement(4321834..4322463) /gene="yijF" /locus_tag="STM4107" /db_xref="GeneID:1255634" CDS complement(4321834..4322457) /gene="yijF" /locus_tag="STM4107" /note="similar to E. coli orf, hypothetical protein (AAC76926.1); Blastp hit to AAC76926.1 (205 aa), 67% identity in aa 1 - 203" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_462988.1" /db_xref="GeneID:1255634" /translation="MKFAQALIGILAAFFISHISHHSPRSDTRPITVQAQTNAAIAQS AGTQIGKTLFYDAAYVRLDYPNGDLPLERGVCADVVIRALRSQQVDLQKRVHEDMQAH FSAYPNNWKLKRPDSNIDHRRVPNLETWFQRQNKALPVTDKYSDYQPGDIVSWRLDNG LAHIGVVSLNVTPEGVPLVVHNIGAGAQEEDVLFNWKVTGHFRYFSH" misc_feature complement(4321843..4322370) /gene="yijF" /locus_tag="STM4107" /note="Uncharacterized conserved protein YijF, DUF1287 family [Function unknown]; Region: YiijF; COG3738" /db_xref="CDD:442952" regulatory complement(4322458..4322463) /regulatory_class="ribosome_binding_site" /gene="yijF" /locus_tag="STM4107" /note="putative RBS for yijF; RegulonDB:STMS1H004031" gene complement(4322716..4323833) /gene="gldA" /locus_tag="STM4108" /db_xref="GeneID:1255635" CDS complement(4322716..4323819) /gene="gldA" /locus_tag="STM4108" /EC_number="1.1.1.6" /note="similar to E. coli glycerol dehydrogenase, (NAD) (AAC76927.1); Blastp hit to AAC76927.1 (380 aa), 91% identity in aa 14 - 380" /codon_start=1 /transl_table=11 /product="glycerol dehydrogenase, NAD" /protein_id="NP_462989.1" /db_xref="GeneID:1255635" /translation="MDRIIQSPGKYIQGANVIARLGDYLKPMANNWLVVGDKFVLGFA EETLRKSLTDAGLSVEIAPFGGECSQNEIDRLRAVAEKSQCGAVLGIGGGKTLDTAKA LAHFMNVPVAIAPTIASTDAPCSALSVIYTDAGEFDRYLLLPHNPNMVIVDTQIVAGA PARLLAAGIGDALATWFEARACSRSGATTMAGGKCTQAALALAELCYNTLIEEGEKAM LAAEQHVVTPALERVIEANTYLSGVGFESGGLAAAHAIHNGLTAIPDAHHYYHGEKVA FGTLTQLVLENAPVEEIETVAALCHSVGLPITLAQLDIKQDIPAKMRTVAEASCAEGE TIHNMPGGATPDEVYAALLVADQYGQRFLQEWE" misc_feature complement(4322722..4323819) /gene="gldA" /locus_tag="STM4108" /note="glycerol dehydrogenase; Provisional; Region: gldA; PRK09423" /db_xref="CDD:181843" misc_feature complement(order(4323115..4323117,4323124..4323129, 4323196..4323198,4323205..4323207,4323778..4323783, 4323787..4323795)) /gene="gldA" /locus_tag="STM4108" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:341449" misc_feature complement(order(4323007..4323009,4323046..4323048, 4323058..4323060,4323295..4323297,4323307..4323309, 4323328..4323330,4323352..4323354,4323403..4323408, 4323463..4323465,4323469..4323474,4323517..4323519, 4323526..4323528,4323535..4323543,4323709..4323711)) /gene="gldA" /locus_tag="STM4108" /note="active site" /db_xref="CDD:341449" misc_feature complement(order(4323007..4323009,4323058..4323060, 4323307..4323309)) /gene="gldA" /locus_tag="STM4108" /note="metal binding site [ion binding]; metal-binding site" /db_xref="CDD:341449" regulatory complement(4323828..4323833) /regulatory_class="ribosome_binding_site" /gene="gldA" /locus_tag="STM4108" /note="putative RBS for gldA; RegulonDB:STMS1H004032" gene complement(4323831..4324504) /gene="talC" /locus_tag="STM4109" /db_xref="GeneID:1255636" CDS complement(4323831..4324493) /gene="talC" /locus_tag="STM4109" /EC_number="2.2.1.-" /note="similar to E. coli putative transaldolase (AAC76928.1); Blastp hit to AAC76928.1 (220 aa), 89% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="putative transaldolase" /protein_id="NP_462990.1" /db_xref="GeneID:1255636" /translation="MELYLDTANVAEVERLARIFPIAGVTTNPSIVAASKESIWDVLP RLQNAIGEEGTLFAQTMSRDAKGMVEEAKRLNNAIPGIVVKIPVTAEGLAAIKLLKKE GIVTLGTAVYSASQGLLAALAGAKYVAPYVNRVDAQGGDGIRMVQELQTLLEHHAPDS MVLAASFKTPRQALDCLLAGCQAITLPLDVAQQMLNTPAVESAIEKFEQDWKNAFGNL NL" misc_feature complement(4323834..4324493) /gene="talC" /locus_tag="STM4109" /note="fructose-6-phosphate aldolase; Reviewed; Region: PRK12653" /db_xref="CDD:183653" misc_feature complement(order(4323999..4324001,4324101..4324103, 4324239..4324241,4324410..4324415,4324476..4324478)) /gene="talC" /locus_tag="STM4109" /note="active site" /db_xref="CDD:188643" misc_feature complement(order(4323861..4323866,4323870..4323875, 4323885..4323887,4323894..4323899,4323903..4323905, 4323951..4323953,4323960..4323965,4323981..4323983, 4323987..4323989,4324026..4324031,4324080..4324082, 4324086..4324088,4324095..4324097,4324101..4324103, 4324146..4324148,4324203..4324205,4324212..4324217, 4324221..4324223,4324281..4324283,4324299..4324301, 4324317..4324319,4324377..4324379,4324395..4324397, 4324404..4324409,4324434..4324436,4324443..4324445)) /gene="talC" /locus_tag="STM4109" /note="intersubunit interactions [active]" /db_xref="CDD:188643" misc_feature complement(4324239..4324241) /gene="talC" /locus_tag="STM4109" /note="catalytic residue [active]" /db_xref="CDD:188643" regulatory complement(4324499..4324504) /regulatory_class="ribosome_binding_site" /gene="talC" /locus_tag="STM4109" /note="putative RBS for talC; RegulonDB:STMS1H004033" gene complement(4324504..4327011) /gene="ptsA" /locus_tag="STM4110" /db_xref="GeneID:1255637" CDS complement(4324504..4327005) /gene="ptsA" /locus_tag="STM4110" /EC_number="2.7.3.9" /note="similar to E. coli PEP-protein phosphotransferase system enzyme I (AAC76929.1); Blastp hit to AAC76929.1 (711 aa), 90% identity in aa 1 - 711" /codon_start=1 /transl_table=11 /product="general PTS family enzyme I" /protein_id="NP_462991.1" /db_xref="GeneID:1255637" /translation="MPLIVEFTCELPNGVHARPASHVETLCNTFTSQIEWHNLRTDRK GSAKSALALIGTDTLAGDHCQLVISGADEQVACQRLSQWLRDEFPLCDAPLAEIKNSE LEPLPASLTQLNPQIYRARSVCSGSAGGVLTPLSSLDLNALGELPTANDTETEQAALD NGLAMLIKHIEFRQLDSDGAASAILEAHRSLAGDASLRQHLLDGVLRGLSCAQAIVES ANHFCNEFARASSSYLQERALDVRDVCFQLLQHIYGGQRFPAPGQLTRPSICMAEELT PSQFLELDKTFLKGLLLKSGGTTSHTVILARSFNIPTLVGVEIEALTPWRQQTVYIDG NAGAIVVAPDEPVTRYYQQEARVQDALREQQRIWLTQEARTADGIRMEVAANIAHSVE AQAAFSNGAEAVGLFRTEMLYMDRACAPDENELYNIFCQALESAKGRSIIVRTMDIGG DKPVDYLNIPAEANPFLGYRAVRIYEEYASLFTTQLRSILRASAHGNLKIMIPMISSM EEILWVKEKLAEAKQQLRNEHIPFDEKIPLGIMLEVPSVMFIIDQCCEEIDFFSIGSN DLTQYLLAVDRDNAKVTRHYNSLNPAFLRALDFAVQAVHRQGKWIGLCGELGAKGSVL PLLVGLGLDEISMGAPSIPAAKARMAQLDSRACRQLLNQAMACRTSLEVEHLLAQFRM SQQDAPLVTAQCITLDSDWRSKEEVIKGMTDNLLLAGRCRYPRKLEADLWAREAVFST GLGFSFAIPHSKSEHIEQSTISVARLNAPVRWGDDEAQFIIMLTLNKHAAGDQHMRIF SRLARRIMHEEFRNTLVNAASADAIASLLQHELEL" misc_feature complement(4326754..4326990) /gene="ptsA" /locus_tag="STM4110" /note="Histidine-containing phosphocarrier protein (HPr)-like proteins. HPr is a central component of the bacterial phosphoenolpyruvate sugar phosphotransferase system (PTS). The PTS catalyses the phosphorylation of sugar substrates during their translocation...; Region: PTS-HPr_like; cd00367" /db_xref="CDD:238217" misc_feature complement(4326979..4326990) /gene="ptsA" /locus_tag="STM4110" /note="dimerization domain swap beta strand [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature complement(order(4326841..4326846,4326853..4326864, 4326922..4326924,4326931..4326933,4326943..4326948, 4326952..4326957,4326961..4326963)) /gene="ptsA" /locus_tag="STM4110" /note="regulatory protein interface [polypeptide binding]; other site" /db_xref="CDD:238217" misc_feature complement(4326958..4326960) /gene="ptsA" /locus_tag="STM4110" /note="active site" /db_xref="CDD:238217" misc_feature complement(4326859..4326861) /gene="ptsA" /locus_tag="STM4110" /note="regulatory phosphorylation site [posttranslational modification]; other site" /db_xref="CDD:238217" misc_feature complement(4324954..4326654) /gene="ptsA" /locus_tag="STM4110" /note="Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]; Region: PtsA; COG1080" /db_xref="CDD:440698" misc_feature complement(4324513..4324947) /gene="ptsA" /locus_tag="STM4110" /note="Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) [Carbohydrate transport and metabolism, Signal transduction mechanisms]; Region: PtsN; COG1762" /db_xref="CDD:441368" gene 4326641..4326967 /locus_tag="STM4111" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1255638" regulatory complement(4327006..4327011) /regulatory_class="ribosome_binding_site" /gene="ptsA" /locus_tag="STM4110" /note="putative RBS for ptsA; RegulonDB:STMS1H004034" gene 4327301..4328393 /gene="frwC" /locus_tag="STM4112" /db_xref="GeneID:1255639" regulatory 4327301..4327306 /regulatory_class="ribosome_binding_site" /gene="frwC" /locus_tag="STM4112" /note="putative RBS for frwC; RegulonDB:STMS1H004035" CDS 4327314..4328393 /gene="frwC" /locus_tag="STM4112" /note="similar to E. coli PTS system, fructose-like enzyme II component (AAC76931.1); Blastp hit to AAC76931.1 (359 aa), 93% identity in aa 1 - 359" /codon_start=1 /transl_table=11 /product="PTS system fructose-like IIC component" /protein_id="NP_462992.1" /db_xref="GeneID:1255639" /translation="MKELVQILKNTRQHLMTGVSHMIPFVVAGGILLAVSVMLYGKGA VPDAATDPNLKKLFDIGVAGLTLMVPFLAAYIGYSIAERSALAPCAIGAWVGNSFGAG FFGALIAGLIGGIVVHYLKKIPVHKVLRSVMPIFVIPIVGTFITAGIMMWGLGEPIGA LTSSLTQWLQGMQQGSIVLLAVIMGLMLAFDMGGPVNKVAYAFMLICVAQGVYTVVAI AAVSICVPPLGLGLATLIGRKNFSVEEREAGKAALVMGCVGVTEGAIPFAAADPLRVI PSIMVGSACGAVMAALFGAQCYAGWGGLIVLPVVEGKLGYVAAVAVGAVVTAVCVNVL KSLTRKNVSQVDEKEDDLDLDFEMN" misc_feature 4327314..4328390 /gene="frwC" /locus_tag="STM4112" /note="PTS fructose transporter subunit EIIC; Region: PRK10478" /db_xref="CDD:182490" gene 4328396..4328728 /gene="frwB" /locus_tag="STM4113" /db_xref="GeneID:1255640" regulatory 4328396..4328401 /regulatory_class="ribosome_binding_site" /gene="frwB" /locus_tag="STM4113" /note="putative RBS for frwB; RegulonDB:STMS1H004036" CDS 4328408..4328728 /gene="frwB" /locus_tag="STM4113" /note="similar to E. coli PTS system fructose-like IIB component 1 (AAC76932.1); Blastp hit to AAC76932.1 (106 aa), 96% identity in aa 1 - 106" /codon_start=1 /transl_table=11 /product="PTS system fructose-like IIB component 1" /protein_id="NP_462993.1" /db_xref="GeneID:1255640" /translation="MTKIIAVTACPSGVAHTYMAAEALESAAKAKGWDVKVETQGSIG LENELTAEDVASADMVILTKDIGIKFEERFAGKTIVRVNISDAVKRADAIMNKIDAHL SQTA" misc_feature 4328414..4328701 /gene="frwB" /locus_tag="STM4113" /note="Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]; Region: FrwB; COG1445" /db_xref="CDD:441054" gene 4328815..4331124 /gene="pflD" /locus_tag="STM4114" /db_xref="GeneID:1255641" regulatory 4328815..4328820 /regulatory_class="ribosome_binding_site" /gene="pflD" /locus_tag="STM4114" /note="putative RBS for pflD; RegulonDB:STMS1H004037" CDS 4328827..4331124 /gene="pflD" /locus_tag="STM4114" /EC_number="2.3.1.54" /note="similar to E. coli formate acetyltransferase 2 (AAC76933.1); Blastp hit to AAC76933.1 (765 aa), 92% identity in aa 1 - 765" /codon_start=1 /transl_table=11 /product="putative pyruvate formate lyase II" /protein_id="NP_462994.1" /db_xref="GeneID:1255641" /translation="MTHRIQRLKAALFQNHREISLERALLYTASHQQTEGEPVILRRA KATAYILEHVEISIRDEELIAGNRTVKPRAGIMSPEMDPYWLLNELDRFPTRPQDRFD ISEEDKRLYREVLFPYWEKRSMKDFINGQMTDEVKAAVSTQIFSINQTDKGQGHIIID YPRLLNNGLGELAAQMRARCEQQPENDFYQAALLLLEASQRHILRYAVLAEQQAERCP DARRRQELLTIAANSRHNAQHKPQTFWQACQLFWYMNIILQYESNASSLSLGRFDQYM LPFYQTSLTQGDDPAFLKELLESLWVKCNDIVLLRSTSSARYFAGFPTGYTALLGGLT ESGRSAVNVLSFLCLDAYQSVQLPQPNLGVRTNALIDTPFLLKTAETIRLGTGIPQIF NDEVVVPAFLNRGVSLEDARDYAVVGCVELSIPGRTYGLHDIAMFNLLKVMEISLYEN EGNDTLTYEALLAHIRAKISHYITLMVEGSNICDIGHRDWAPVPLLSSFISDCLEKGR DITDGGARYNFSGVQGIGIANLSDSLHALNGLVFDQQRLSFDALLSILKNNFATPEGE KIRARLINRFEKYGNDIDNVDNISAELLRYYCKEVEKYQNPRGGQFTPGSYTVSAHVP LGAVVGATPDGRFAGEQLADGGLSPMLGQDMQGPTAVLKSVSKLDNTLLSNGTLLNVK FTPATLEGEAGLRKLADFLRAFTQLKLQHIQFNVVNADTLREAQLRPQDFAGLVVRVA GYSAFFVELSKEIQDDIIRRTAHQL" misc_feature 4328827..4331121 /gene="pflD" /locus_tag="STM4114" /note="putative formate acetyltransferase 2; Provisional; Region: pflD; PRK09983" /db_xref="CDD:182181" gene 4331077..4331968 /gene="pflC" /locus_tag="STM4115" /db_xref="GeneID:1255642" regulatory 4331077..4331082 /regulatory_class="ribosome_binding_site" /gene="pflC" /locus_tag="STM4115" /note="putative RBS for pflC; RegulonDB:STMS1H004038" CDS 4331090..4331968 /gene="pflC" /locus_tag="STM4115" /EC_number="1.97.1.4" /note="similar to E. coli probable pyruvate formate lyase activating enzyme 2 (AAC76934.1); Blastp hit to AAC76934.1 (292 aa), 78% identity in aa 1 - 292" /codon_start=1 /transl_table=11 /product="putative pyruvate formate lyase activating enzyme 2" /protein_id="NP_462995.1" /db_xref="GeneID:1255642" /translation="MTLFAAPRISCEVVGARDEETARIFNIQRYSLNDGQGIRTVVFF KGCPHTCPWCANPESISPRIETVRRENKCLRCTPCLRDADECPSGAFERIGRDITLDE LEREVLKDDIFFRTSGGGVTLSGGEVLMQAPFATRFLQRLRRWGVPCAIETAGDTSAS RLLPLARACDEVLFDLKIMDAERAREVINMNLPRVLENLRLLVSEGITVIPRLPLIPG FTLNAENLQCALTLLRSLGIKQVHLLPFHQYGEPKYRLLGKSWMMKDIPAPSVQEIAL FREMAEQAGFQVTTGG" misc_feature order(4331228..4331230,4331234..4331236,4331240..4331242, 4331246..4331254,4331459..4331461,4331465..4331470, 4331543..4331551,4331606..4331608,4331729..4331731, 4331822..4331827) /gene="pflC" /locus_tag="STM4115" /note="FeS/SAM binding site [active]" /db_xref="CDD:100105" misc_feature 4331327..4331965 /gene="pflC" /locus_tag="STM4115" /note="pyruvate formate lyase II activase; Provisional; Region: PRK10076" /db_xref="CDD:182224" gene 4331958..4332323 /gene="frwD" /locus_tag="STM4116" /db_xref="GeneID:1255643" regulatory 4331958..4331963 /regulatory_class="ribosome_binding_site" /gene="frwD" /locus_tag="STM4116" /note="putative RBS for frwD; RegulonDB:STMS1H004039" CDS 4331970..4332323 /gene="frwD" /locus_tag="STM4116" /note="similar to E. coli PTS system fructose-like IIB component 2 (AAC76935.1); Blastp hit to AAC76935.1 (113 aa), 83% identity in aa 3 - 113" /codon_start=1 /transl_table=11 /product="PTS system fructose-like IIB component 2" /protein_id="NP_462996.1" /db_xref="GeneID:1255643" /translation="MAVPVRHLVAVTACVSGVAHTYMAAERLEKLCQQEKWSIKIETQ GALGTENRLTEEDIRRADVVLLITDIELAGVERFTRSRYVQSGISAFLREPQRVMSAV RKLLSAPQHTHLILE" misc_feature 4331979..4332320 /gene="frwD" /locus_tag="STM4116" /note="PTS fructose-like transporter subunit IIB; Region: PRK10427" /db_xref="CDD:182451" misc_feature order(4332009..4332020,4332024..4332032) /gene="frwD" /locus_tag="STM4116" /note="P-loop; other site" /db_xref="CDD:99911" misc_feature order(4332009..4332011,4332015..4332020,4332027..4332032) /gene="frwD" /locus_tag="STM4116" /note="active site" /db_xref="CDD:99911" misc_feature 4332009..4332011 /gene="frwD" /locus_tag="STM4116" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99911" gene complement(4332310..4333173) /gene="yijO" /locus_tag="STM4117" /db_xref="GeneID:1255644" CDS complement(4332310..4333161) /gene="yijO" /locus_tag="STM4117" /note="similar to E. coli putative ARAC-type regulatory protein (AAC76936.1); Blastp hit to AAC76936.1 (283 aa), 89% identity in aa 1 - 282" /codon_start=1 /transl_table=11 /product="putative AraC/XylS family regulator" /protein_id="NP_462997.1" /db_xref="GeneID:1255644" /translation="MYHDVSHLLSRLINGPLPLRQIYFASASGPAPELAYQVDFPRLE IVLEGELTDMSITAPLIPCDVLYVPAGGWNIPQWQTPVTTLSILFGKQQLGFSVVHWD GQQHQNLTKQHVARRGPRIGSFLLQTLNEMQMQPQEQQTARLIVASLLSHCRDLLGSQ IQTASRSRALFEAIREYIDERYAAPLTRESVAQAFYISPNYLSHLFQKTGAIGFNEYL NHTRLEHAKTLLKGYDLKVKEVAHRCGFVDSNYFCRLFRKNTERSPSEYRRQYHSQLT EKQITPG" misc_feature complement(4332340..4333110) /gene="yijO" /locus_tag="STM4117" /note="AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:441809" misc_feature complement(4332358..4332609) /gene="yijO" /locus_tag="STM4117" /note="helix_turn_helix, arabinose operon control protein; Region: HTH_ARAC; smart00342" /db_xref="CDD:197666" regulatory complement(4333168..4333173) /regulatory_class="ribosome_binding_site" /gene="yijO" /locus_tag="STM4117" /note="putative RBS for yijO; RegulonDB:STMS1H004040" gene complement(4333322..4335067) /gene="yijP" /locus_tag="STM4118" /db_xref="GeneID:1255645" CDS complement(4333322..4335055) /gene="yijP" /locus_tag="STM4118" /note="similar to E. coli orf, hypothetical protein (AAC76937.1); Blastp hit to AAC76937.1 (577 aa), 89% identity in aa 1 - 577" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_462998.1" /db_xref="GeneID:1255645" /translation="MQSTLLQTKPAFSWKALGWALLYFWFFSTLLQAIIYLTGYSGTN GLRDSLLYSSLWLIPVFLFPGRIRVIAAVIGVVLWAASLAALSYYVIYGQEFSQSVLF VMFETNANEASEYLSQYFSLKIVLVALAYTVAAILLWTRLRPVYIPSPWRYLVSFALL YGLILHPIAMNTFIKHKSMEKTLDSLASRMEPAAPWQFITGYYQYRLQLASLNKLLNE NDALPPLANFQDHSGDAPRTLVLVIGESTQRGRMSLYGYPRETTPELDALHKTDPGLT VFNNVVTSRPYTIEILQQALTFADEKNPDWYLTKPSLMNMMKQAGYKTFWITNQQTMT ARNTMLTVFSKQTDKQFYMNQQRTQSAREYDSNVLAPFKAVLADPAPKKFIIVHLLGT HIKYKFRYPENQGKFDGKTDHVPPGLSSDELESYNDYDNANLYNDYVVASLIKDYKAT DPNGFLLYFSDHGEEVYDTPPHKTQGRNEDSPTRHMYTVPFLLWTSEKWQAAHPRDFS QDVDRKYSSSELIHTWSDLAGLTYDGYDPTRSITNPQFKETTRWIGNPYKKNALIDYD TLPYGDQVGNQ" misc_feature complement(4333352..4335019) /gene="yijP" /locus_tag="STM4118" /note="phosphoethanolamine transferase CptA; Region: CptA; NF012179" /db_xref="CDD:333729" misc_feature complement(order(4333625..4333627,4333670..4333675, 4333877..4333879,4334192..4334194,4334321..4334323)) /gene="yijP" /locus_tag="STM4118" /note="putative active site [active]" /db_xref="CDD:293741" misc_feature complement(order(4333670..4333672,4333877..4333879, 4334192..4334194,4334321..4334323)) /gene="yijP" /locus_tag="STM4118" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:293741" misc_feature complement(order(4333622..4333630,4334063..4334065, 4334102..4334104)) /gene="yijP" /locus_tag="STM4118" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:293741" regulatory complement(4335062..4335067) /regulatory_class="ribosome_binding_site" /gene="yijP" /locus_tag="STM4118" /note="putative RBS for yijP; RegulonDB:STMS1H004041" gene complement(4335266..4337927) /gene="ppc" /locus_tag="STM4119" /db_xref="GeneID:1255646" CDS complement(4335266..4337917) /gene="ppc" /locus_tag="STM4119" /EC_number="4.1.1.31" /note="similar to E. coli phosphoenolpyruvate carboxylase (AAC76938.1); Blastp hit to AAC76938.1 (883 aa), 93% identity in aa 1 - 883" /codon_start=1 /transl_table=11 /product="phosphoenolpyruvate carboxylase" /protein_id="NP_462999.1" /db_xref="GeneID:1255646" /translation="MNEQYSALRSNVSMLGKVLGETIKDALGEHILDRVETIRKLSKS SRAGNEANRQELLTTLQNLSNDELLPVARAFSQFLNLANTAEQYHSISPKGEAASNPE VIARTLRKLKNQPDLNDATIKKAVESLSLELVLTAHPTEITRRTLIHKMGEINNCLKQ LDNTDIADYERHQVMRRLRQLIAQSWHTDEIRKQRPSPVDEAKWGFAVVENSLWQGVP NYLRELNEQLEENLGYKLPVDFVPVRFTSWMGGDRDGNPNVTADITRHVLLLSRWKAT DLFLKDIHVLVSELSMVDATPELLALVGEEGASEPYRYLMKKLRARLMATQSWLEARL KGEKLPKPAGLLTQNEQLWEPLYACYQSLQACGMGIIANGELLDTLRRVKCFGVPLVR IDIRQESTRHTEALGEITRYLGIGDYESWSEADKQAFLIRELNSKRPLLPRNWEPSND TREVLETCKVIAEAPKGSIAAYVISMAKTPSDVLAVHLLLKEAGIGFAMPVAPLFETL DDLNNADDVMTQLLNIDWYRGLIQGKQMVMIGYSDSAKDAGVMAASWAQYQAQDALIK TCEKAGIELTLFHGRGGSIGRGGAPAHAALLSQPPGSLKGGLRVTEQGEMIRFKYGLP EVTVSSLSLYTSAILEANLLPPPEPKDSWRHIMDELSVISCETYRGYVRENKDFVPYF RSATPEQELGKLPLGSRPAKRRPTGGVESLRAIPWIFAWTQNRLMLPAWLGAGTALQK VVEDGKQSELEAMCRDWPFFSTRLGMLEMVFSKADLWLADYYDQRLVAKTLWPLGKEL RDLLEEDIKVVLAIANDSHLMADLPWIAESIQLRNVYTDPLNVLQAELLYRSRLTEEQ GKSPDPRVEQALMVTIAGVAAGMRNTG" misc_feature complement(4335269..4337917) /gene="ppc" /locus_tag="STM4119" /note="phosphoenolpyruvate carboxylase; Reviewed; Region: PRK00009" /db_xref="CDD:234570" regulatory complement(4337922..4337927) /regulatory_class="ribosome_binding_site" /gene="ppc" /locus_tag="STM4119" /note="putative RBS for ppc; RegulonDB:STMS1H004042" gene complement(4338286..4339524) /gene="argE" /locus_tag="STM4120" /db_xref="GeneID:1255647" CDS complement(4338286..4339437) /gene="argE" /locus_tag="STM4120" /EC_number="3.5.1.16" /note="similar to E. coli acetylornithine deacetylase (AAC76939.1); Blastp hit to AAC76939.1 (383 aa), 93% identity in aa 1 - 383" /codon_start=1 /transl_table=11 /product="acetylornithine deacetylase" /protein_id="NP_463000.1" /db_xref="GeneID:1255647" /translation="MKNVLPPFIEIYRALIATPSISATEESLDQSNASLITLLAGWFS DLGFNVEVQPVPGTRNKFNMLASTGHGAGGLLLTGHTDTVPFDDGRWTRDPFTLTEHD NKLYGLGTADMKGFFAFILDALRDVDVTKLKKPLYILATADEETSMAGARYFSKTTAL RPDCAIIGEPTSLQPIRAHKGHISNVVRVLGQSGHSSDPARGVNAIELMHDAIGHIMQ LRDSLKARYHYEAFTVPYPTLNLGHIHGGDASNRICACCELHMDIRPLPGMTLNDLNG LLNDALAPVSERWPGRLTVAELHPPIPGYECPPDHQLVEVVEKLLGTKTDVVNYCTEA PFMQTLCPTLVLGPGSINQAHQPDEYLETRFIKPTRELITQVVHHFCWH" misc_feature complement(4338289..4339425) /gene="argE" /locus_tag="STM4120" /note="acetylornithine deacetylase; Provisional; Region: PRK05111" /db_xref="CDD:235346" protein_bind 4339396..4339409 /note="putative binding site for ArgR, RegulonDB: STMS1H000034" /bound_moiety="ArgR" protein_bind 4339423..4339434 /note="putative binding site for ArgR, RegulonDB: STMS1H000033" /bound_moiety="ArgR" gene 4339438..4340530 /gene="argC" /locus_tag="STM4121" /db_xref="GeneID:1255648" regulatory 4339438..4339446 /regulatory_class="minus_35_signal" /gene="argC" /locus_tag="STM4121" /note="putative -35_signal for argC; RegulonDB:STMLTH004648" regulatory complement(4339446..4339451) /regulatory_class="ribosome_binding_site" /gene="argE" /locus_tag="STM4120" /note="putative RBS for argE; RegulonDB:STMS1H004043" protein_bind complement(4339465..4339489) /gene="argE" /locus_tag="STM4120" /note="putative binding site for ArgR, RegulonDB: STMS1H000029" /bound_moiety="ArgR" regulatory 4339465..4339473 /regulatory_class="minus_10_signal" /gene="argC" /locus_tag="STM4121" /note="putative -10_signal for argC; RegulonDB:STMLTH004648" protein_bind complement(4339492..4339510) /gene="argE" /locus_tag="STM4120" /note="putative binding site for ArgR, RegulonDB: STMS1H000032" /bound_moiety="ArgR" regulatory complement(4339500..4339508) /regulatory_class="minus_10_signal" /gene="argE" /locus_tag="STM4120" /note="putative -10_signal for argE; RegulonDB:STMLTH004647" regulatory complement(4339516..4339524) /regulatory_class="minus_35_signal" /gene="argE" /locus_tag="STM4120" /note="putative -35_signal for argE; RegulonDB:STMLTH004647" regulatory 4339516..4339521 /regulatory_class="ribosome_binding_site" /gene="argC" /locus_tag="STM4121" /note="putative RBS for argC; RegulonDB:STMS1H004044" CDS 4339526..4340530 /gene="argC" /locus_tag="STM4121" /EC_number="1.2.1.38" /note="similar to E. coli N-acetyl-gamma-glutamylphosphate reductase (AAC76940.1); Blastp hit to AAC76940.1 (334 aa), 91% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="N-acetyl-gamma-glutamylphosphate reductase" /protein_id="NP_463001.1" /db_xref="GeneID:1255648" /translation="MLNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKL ISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATAHEVSHDLAPQFLQAGCVVFDL SGAFRVNDRAFYEKYYGFTHQYPELLEQAVYGLAEWNVDKLNTANLIAVPGCYPTAAQ LSLKPLIDGGLLDLTQWPVINATSGVSGAGRKAAISNSFCEVSLQPYGVFTHRHQPEI AVHLGAEVIFTPHLGNFPRGILETITCRLKAGVTHAQVADVLQKAYGDKPLVRLYDKG VPALKNVVGLPFCDIGFAVQGEHLIVVATEDNLLKGAAAQAVQCANIRFGFAETQSLI " misc_feature 4339529..4340527 /gene="argC" /locus_tag="STM4121" /note="N-acetyl-gamma-glutamyl-phosphate reductase, common form; Region: argC; TIGR01850" /db_xref="CDD:273832" gene 4340529..4341314 /gene="argB" /locus_tag="STM4122" /db_xref="GeneID:1255649" regulatory 4340529..4340534 /regulatory_class="ribosome_binding_site" /gene="argB" /locus_tag="STM4122" /note="putative RBS for argB; RegulonDB:STMS1H004045" CDS 4340538..4341314 /gene="argB" /locus_tag="STM4122" /EC_number="2.7.2.8" /note="similar to E. coli acetylglutamate kinase (AAC76941.1); Blastp hit to AAC76941.1 (258 aa), 94% identity in aa 1 - 258" /codon_start=1 /transl_table=11 /product="acetylglutamate kinase" /protein_id="NP_463002.3" /db_xref="GeneID:1255649" /translation="MMNPLIIKLGGVLLDSEEALERLFTALVNYRESHQRPLVIVHGG GCVVDELMKGLNLPVKKKDGLRVTPADQIGIITGALAGTANKTLLAWAKKHHIASVGL FLGDGDSVNVTQLDEALGHVGLAQPGSPKLINMLLENGFLPVVSSIGVTDDGQLMNVN ADQAATALAATLGADLILLSDVSGILDGKGQRIAEMTASKAEQLIDQGIITDGMIVKV NAALDAARALGRPVDIASWRHAEQLPALFNGTPIGTRILA" misc_feature 4340550..4341305 /gene="argB" /locus_tag="STM4122" /note="N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine...; Region: AAK_NAGK-NC; cd04249" /db_xref="CDD:239782" misc_feature order(4340559..4340561,4340565..4340570,4340667..4340672, 4341075..4341077,4341093..4341095,4341162..4341164, 4341168..4341170,4341186..4341188) /gene="argB" /locus_tag="STM4122" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:239782" misc_feature order(4340667..4340672,4340733..4340735,4341009..4341014, 4341018..4341020) /gene="argB" /locus_tag="STM4122" /note="N-acetyl-L-glutamate binding site [chemical binding]; other site" /db_xref="CDD:239782" gene 4341419..4342808 /gene="argH" /locus_tag="STM4123" /db_xref="GeneID:1255650" regulatory 4341419..4341424 /regulatory_class="ribosome_binding_site" /gene="argH" /locus_tag="STM4123" /note="putative RBS for argH; RegulonDB:STMS1H004046" CDS 4341432..4342808 /gene="argH" /locus_tag="STM4123" /EC_number="4.3.2.1" /note="similar to E. coli argininosuccinate lyase (AAC76942.1); Blastp hit to AAC76942.1 (457 aa), 94% identity in aa 1 - 456" /codon_start=1 /transl_table=11 /product="argininosuccinate lyase" /protein_id="NP_463003.1" /db_xref="GeneID:1255650" /translation="MALWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKAL VTVGVLTADEQRQLEEALNVLLEEVRANPQQILQSDAEDIHSWVEGKLIDKVGQLGKK LHTGRSRNDQVATDLKLWCKETVRELLTANRQLQSALVETAQANQDAVMPGYTHLQRA QPVTFAHWCLAYVEMLARDESRLQDTLKRLDVSPLGCGALAGTAYEIDREQLAGWLGF TSATRNSLDSVSDRDHVLELLSDAAIGMVHLSRFAEDLIFFNSGEAGFVELSDRVTSG SSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDT WLDCLHMAALVLDGIQVKRPRCQDAAQQGYANATELADYLVAKGVPFREAHHIVGEAV VEAIRQGKPLEALPLADLQKFSRVIGDDVYPILSLQSCLDKRAAKGGVSPLQVAQAIN DAKARLAL" misc_feature 4341432..4342796 /gene="argH" /locus_tag="STM4123" /note="argininosuccinate lyase; Provisional; Region: PRK04833" /db_xref="CDD:179883" gene 4343021..4344010 /gene="oxyR" /locus_tag="STM4125" /db_xref="GeneID:1255651" regulatory 4343021..4343029 /regulatory_class="minus_35_signal" /gene="oxyR" /locus_tag="STM4125" /note="putative -35_signal for oxyR; RegulonDB:STMLTH004649" protein_bind 4343037..4343083 /gene="oxyR" /locus_tag="STM4125" /note="putative binding site for OxyR, RegulonDB: STMS1H000336" /bound_moiety="OxyR" regulatory 4343045..4343053 /regulatory_class="minus_10_signal" /gene="oxyR" /locus_tag="STM4125" /note="putative -10_signal for oxyR; RegulonDB:STMLTH004649" regulatory 4343082..4343087 /regulatory_class="ribosome_binding_site" /gene="oxyR" /locus_tag="STM4125" /note="putative RBS for oxyR; RegulonDB:STMS1H004048" CDS 4343093..4344010 /gene="oxyR" /locus_tag="STM4125" /note="regulates intracellular hydrogen peroxide (LysR family); similar to E. coli activator, hydrogen peroxide-inducible genes (AAC76943.1); Blastp hit to AAC76943.1 (305 aa), 95% identity in aa 1 - 305" /codon_start=1 /transl_table=11 /product="regulatory protein sensor for oxidative stress" /protein_id="NP_463004.1" /db_xref="GeneID:1255651" /translation="MNIRDLEYLVALAEHRHFRRAADSCHVSQPTLSGQIRKLEDELG VMLLERTSRKVLFTQAGLLLVDQARTVLREVKVLKEMASQQGETMSGPLHIGLIPTIG PYLLPLIIPMLHQTFPKLEMYLHEAQTHQLLAQLDSGKLDCAILALVKESEAFIEVPL FDEPMMLAIYEDHPWANRDRVPMSDLAGEKLLMLEDGHCLRDQAMGFCFEAGADEDTH FRATSLETLRNMVAAGSGITLLPALAVPQERKRDGVVYLPCIKPEPRRTVGLVYRPGS PLRSRYEQLAEAIRGAMDGHFDKALKQAV" misc_feature 4343093..4344007 /gene="oxyR" /locus_tag="STM4125" /note="DNA-binding transcriptional regulator OxyR; Provisional; Region: PRK11151" /db_xref="CDD:182999" gene complement(4343993..4345408) /gene="udhA" /locus_tag="STM4126" /db_xref="GeneID:1255652" CDS complement(4343993..4345393) /gene="udhA" /locus_tag="STM4126" /EC_number="1.6.1.1" /note="similar to E. coli putative oxidoreductase (AAC76944.1); Blastp hit to AAC76944.1 (444 aa), 97% identity in aa 1 - 444" /codon_start=1 /transl_table=11 /product="soluble pyridine nucleotide transhydrogenase" /protein_id="NP_463005.1" /db_xref="GeneID:1255652" /translation="MPHSWDYDAVVIGSGPGGEGAAMGLVKQGARVAVIERYHNVGGG CTHWGTIPSKALRHAVSRIIEFNQNPLYSDHSRLLRSSFADILNHADNVINQQTRMRQ GFYERNHCEILQGNAHFIDEHTLALECHDGTVETLTAEKFVIACGSRPYHPNDVDFSH PRIYDSDSILSLHHEPRHVIIYGAGVIGCEYASIFRGMDVKVDLINTRDRLLAFLDQE MSDSLSYHFWNSGVVIRHNEEYEKIEGCDDGVIMHLKSGKKLKADCLLYANGRTGNTD SLALENIGLETDSRGQLKVNSMYQTALPHVYAVGDVIGYPSLASAAYDQGRIAAQALV KGEATAHLIEDIPTGIYTIPEISSVGKTEQQLTAMKVPYEVGRAQFKHLARAQIVGMN VGTLKILFHRETKEILGIHCFGERAAEIIHIGQAIMEQKGGGNTIEYFVNTTFNYPTM AEAYRVAALNGLNRLF" misc_feature complement(4343996..4345390) /gene="udhA" /locus_tag="STM4126" /note="Si-specific NAD(P)(+) transhydrogenase; Region: PRK05249" /db_xref="CDD:235373" regulatory complement(4345403..4345408) /regulatory_class="ribosome_binding_site" /gene="udhA" /locus_tag="STM4126" /note="putative RBS for udhA; RegulonDB:STMS1H004049" gene 4345577..4346227 /gene="yijC" /locus_tag="STM4127" /db_xref="GeneID:1255653" regulatory 4345577..4345582 /regulatory_class="ribosome_binding_site" /gene="yijC" /locus_tag="STM4127" /note="putative RBS for yijC; RegulonDB:STMS1H004050" CDS 4345592..4346227 /gene="yijC" /locus_tag="STM4127" /note="similar to E. coli orf, hypothetical protein (AAC76945.1); Blastp hit to AAC76945.1 (234 aa), 98% identity in aa 19 - 225" /codon_start=1 /transl_table=11 /product="putative TetR/AcrR family transcriptional repressor" /protein_id="NP_463006.3" /db_xref="GeneID:1255653" /translation="MMGVRAQQKEKTRRSLVEAAFSQLSAERSFASLSLREVAREAGI APTSFYRHFRDVDELGLTMVDESGLMLRQLMRQARQRIAKGGSVIRTSVSTFMEFIGN NPNAFRLLLRERSGTSAAFRAAVAREIQHFIAELADYLELENHMPRAFTEAQAEAMVT IVFSAGAEALDIGAEQRRQLEERLVLQLRMIAKGAYYWYRREQEKIAHHSE" misc_feature 4345592..4346194 /gene="yijC" /locus_tag="STM4127" /note="HTH-type transcriptional repressor FabR; Region: PRK11202" /db_xref="CDD:236881" gene 4346232..4346602 /gene="yijD" /locus_tag="STM4128" /db_xref="GeneID:1255654" regulatory 4346232..4346237 /regulatory_class="ribosome_binding_site" /gene="yijD" /locus_tag="STM4128" /note="putative RBS for yijD; RegulonDB:STMS1H004051" CDS 4346243..4346602 /gene="yijD" /locus_tag="STM4128" /note="similar to E. coli orf, hypothetical protein (AAC76946.1); Blastp hit to AAC76946.1 (119 aa), 90% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463007.1" /db_xref="GeneID:1255654" /translation="MKQSGQDKGTLLLALIAGLSINGTFAALFSAIVPFSVFPIISLV LTVYCLHQRYQNRTMPVGLPGLAAACFILGVLLYSTVVRAEYPDIGSNFFPAVLSVIL VFWIGFKLRNRKQDTAE" misc_feature 4346243..4346599 /gene="yijD" /locus_tag="STM4128" /note="YijD family membrane protein; Region: PRK11056" /db_xref="CDD:236832" gene complement(4346649..4347894) /gene="trmA" /locus_tag="STM4129" /db_xref="GeneID:1255655" CDS complement(4346649..4347749) /gene="trmA" /locus_tag="STM4129" /EC_number="2.1.1.35" /note="tRNA (uracil-5-)-methyltransferase. (SW:TRMA_SALTY)" /codon_start=1 /transl_table=11 /product="tRNA (uracil-5-)-methyltransferase" /protein_id="NP_463008.1" /db_xref="GeneID:1255655" /translation="MTPEHLPTEQYEAQLAEKVARLQSMMAPFSGLVPEVFRSPVSHY RMRAEFRLWHDGDDLYHIMFDQQTKSRIRVDTFPAASQLINTLMKAMIAGVRDNHALR HKLFQIDYLTTLSNQAVVSLLYHKKLDEEWREAATALRDALRAQGLNVHLIGRATKTK IELDQDYIDERLPVAGKEMIYRQVENSFTQPNAAMNIQMLEWALEVTKDSKGDLLELY CGNGNFSLALARNFNRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNG VREFNRLQGIDLKRYQCETIFVDPPRSGLDSETEKMVQAYPRILYISCNPETLCKNLE TLSQTHTVSRLALFDQFPYTHHMECGVLLTAR" misc_feature complement(4346652..4347749) /gene="trmA" /locus_tag="STM4129" /note="tRNA (uracil-5-)-methyltransferase; Validated; Region: PRK05031" /db_xref="CDD:235332" regulatory complement(4347755..4347760) /regulatory_class="ribosome_binding_site" /gene="trmA" /locus_tag="STM4129" /note="putative RBS for trmA; RegulonDB:STMS1H004052" regulatory complement(4347870..4347878) /regulatory_class="minus_10_signal" /gene="trmA" /locus_tag="STM4129" /note="putative -10_signal for trmA; RegulonDB:STMLTH004650" regulatory complement(4347886..4347894) /regulatory_class="minus_35_signal" /gene="trmA" /locus_tag="STM4129" /note="putative -35_signal for trmA; RegulonDB:STMLTH004650" gene 4348109..4349967 /gene="btuB" /locus_tag="STM4130" /db_xref="GeneID:1255656" regulatory 4348109..4348114 /regulatory_class="ribosome_binding_site" /gene="btuB" /locus_tag="STM4130" /note="putative RBS for btuB; RegulonDB:STMS1H004053" CDS 4348123..4349967 /gene="btuB" /locus_tag="STM4130" /note="vitamin B12 receptor precursor. (SW:BTUB_SALTY)" /codon_start=1 /transl_table=11 /product="outer membrane receptor for transport of vitamin B12, E colicins, and bacteriophage BF23" /protein_id="NP_463009.1" /db_xref="GeneID:1255656" /translation="MIKKATLLTAFSVTAFSAWAQDTSPDTLVVTANRFQQPRSAVLA PVTIVTRQDIERWQSTSVNDVLRRLPGVDIAQSGGAGQNSSIFIRGTNSSHVLVLIDG VRLNLAGVSGSADLSQFPVSLVQRIEYIRGPRSAIYGSDAIGGVVNIITTRDNPGTEL TAGWGSNSYQNYDISTQQQLGENTRATLIGDYEYTKGFDVVAKGGTGMQAQPDRDGFL SKTLYGALEHTFSDRWSGFVRGYGYDNRTDYDAYYSPGSPLIDTRKLYSQSWDAGLHF NGERIQSQLVSSYSHSKDYNYDPHYGRYDTSATLDEMKQYNVQWTNSVVVGHGNVGAG VDWQKQTTTPGTGYVPEGYDQRNTGVYLTGLQQLGDFTLEAAARSDDNSQFGRHGTWQ TSAGWEFIEGYRFIASYGTSYKAPNLGQLYGYYGNPNLNPEKSKQWEGAFEGLTAGVS WRISGYRNDINDMIDYDDHLQKYYNEGKARIKGIEATANFDTGPLTHTVSYDYVDARN AITDTPLPRRSKQMAKYQLDWDVYDFDWGMTYQYLGSRYDSDYSAYPYRTVKMGGVSL WDLTVAYPVTSHLTVRGKIANLFDKDYETVYGYQTAGREYTLSGSYTF" misc_feature 4348123..4349964 /gene="btuB" /locus_tag="STM4130" /note="TonB-dependent vitamin B12 receptor BtuB; Region: btuB; PRK10641" /db_xref="CDD:236730" misc_feature order(4348255..4348284,4348312..4348341,4348378..4348395, 4348414..4348437,4348483..4348515,4348549..4348575) /gene="btuB" /locus_tag="STM4130" /note="N-terminal plug [active]" /db_xref="CDD:238657" gene 4349912..4350763 /gene="murI" /locus_tag="STM4131" /db_xref="GeneID:1255657" CDS 4349912..4350763 /gene="murI" /locus_tag="STM4131" /EC_number="5.1.1.3" /note="glutamate racemase. (SW:MURI_SALTY)" /codon_start=1 /transl_table=11 /product="glutamate racemase" /protein_id="NP_463010.1" /db_xref="GeneID:1255657" /translation="MATKLQDENTPCLAATPSEPRPTVLVFDSGVGGLSVYDEIRRLL PDLHYIYAFDNVAFPYGEKSETFIVERVVEIVTAVQQRYPLSLAVIACNTASTVSLPA LREKFAFPVVGVVPAIKPAARLTANGVVGLLATRATVKRPYTHELIARFANECQIAML GSAELVELAEAKLHGDSVSLEELRRILRPWLRMPEPPDTVVLGCTHFPLLRDELLQVL PEGTRLVDSGAAIARRTAWLLEHEAPDAKSTDANIAYCMAMTPGAEQLLPVLQRYGFE TLEKLPV" misc_feature 4349960..4350754 /gene="murI" /locus_tag="STM4131" /note="glutamate racemase; Provisional; Region: PRK00865" /db_xref="CDD:234851" gene 4351143..4352686 /gene="rrsB" /locus_tag="STM4132" /db_xref="GeneID:1255658" rRNA 4351143..4352686 /gene="rrsB" /locus_tag="STM4132" /product="16S ribosomal RNA" /db_xref="GeneID:1255658" gene 4352754..4352827 /gene="ileU" /locus_tag="STM4133" /db_xref="GeneID:1255659" tRNA 4352754..4352827 /gene="ileU" /locus_tag="STM4133" /product="tRNA-Val" /db_xref="GeneID:1255659" gene 4352942..4353014 /locus_tag="STM4134" /db_xref="GeneID:1255660" tRNA 4352942..4353014 /locus_tag="STM4134" /product="tRNA-Ala" /db_xref="GeneID:1255660" gene 4353200..4356193 /gene="rrlB" /locus_tag="STM4135" /db_xref="GeneID:1255661" rRNA 4353200..4356193 /gene="rrlB" /locus_tag="STM4135" /product="23S ribosomal RNA" /db_xref="GeneID:1255661" gene 4356386..4356506 /gene="rrfB" /locus_tag="STM4136" /db_xref="GeneID:1255662" rRNA 4356386..4356506 /gene="rrfB" /locus_tag="STM4136" /product="5S ribosomal RNA" /db_xref="GeneID:1255662" gene 4356672..4357713 /gene="murB" /locus_tag="STM4137" /db_xref="GeneID:1255663" regulatory 4356672..4356677 /regulatory_class="ribosome_binding_site" /gene="murB" /locus_tag="STM4137" /note="putative RBS for murB; RegulonDB:STMS1H004057" CDS 4356685..4357713 /gene="murB" /locus_tag="STM4137" /EC_number="1.3.1.98" /note="UDP-N-acetylenolpyruvoylglucosamine reductase. (SW:MURB_SALTY)" /codon_start=1 /transl_table=11 /product="UDP-N-acetylenolpyruvoylglucosamine reductase" /protein_id="NP_463011.1" /db_xref="GeneID:1255663" /translation="MTHSLKPWNTFGIDHCAKHIVCAENEQQLLSAWQQATREGLPVM ILGEGSNVLFLENYAGTVILNRLKGIEVNETADAWHLHVGAGENWHQLVRYALDNNMP GLENLALIPGCVGSSPIQNIGAYGVELQRVCDYVDCVELETGKRLRLSAAECRFGYRD SIFKNEYQDRVAIVAVGLRLSKQWQPVLTYGDLTCLDPKTVTAQQVFDAVCHMRTTKL PDPKVNGNAGSFFKNPVVAADIAMELLERFPNAPHYPQADGSVKLAAGWLIDQCQLKG VTIGGAAVHRQQALVLINANDATSKDVVALAHHVRQKVGEKFNVWLEPEVRFIGRSGE VNAVESIA" misc_feature 4356685..4357671 /gene="murB" /locus_tag="STM4137" /note="UDP-N-acetylmuramate dehydrogenase; Region: murB; PRK00046" /db_xref="CDD:234593" gene 4357696..4358672 /gene="birA" /locus_tag="STM4138" /db_xref="GeneID:1255664" regulatory 4357696..4357701 /regulatory_class="ribosome_binding_site" /gene="birA" /locus_tag="STM4138" /note="putative RBS for birA; RegulonDB:STMS1H004058" CDS 4357710..4358672 /gene="birA" /locus_tag="STM4138" /EC_number="6.3.4.15" /note="bifunctional; BirA family; BIRA bifunctional protein. (SW:BIRA_SALTY); biotin-[acetylCoA carboxylase] holoenzyme synthetase" /codon_start=1 /transl_table=11 /product="biotin operon transcriptional repressor" /protein_id="NP_463012.1" /db_xref="GeneID:1255664" /translation="MKDTTVPLTLISLLADGEFHSGEQLGERLGMSRAAINKHIQTLR DWGVDVFTVPGKGYSLPEPIQLLDADRIHSQLDSGNVAVLPVIDSTNQYLLDRIGELR SGDACVAEYQQAGRGRRGRKWFSPFGANLYLSMYWRLEQGPAAAIGLSLVIGIVMAEV LRKLGADKVRVKWPNDLYLLDRKLAGILVELTGKTGDAAQIVIGAGINMAMRRVEEDV INQGWITLQEAGITLDRNMLAAKLIYKLRAALELFEQEGLSPYLSRWKKLDNFIDRPV KLIIGDKEIFGISRGIDTQGALLLEQDGVIKPWMGGEISLRSAE" misc_feature 4357713..4358669 /gene="birA" /locus_tag="STM4138" /note="bifunctional biotin--[acetyl-CoA-carboxylase] ligase/biotin operon repressor BirA; Region: PRK11886" /db_xref="CDD:237010" misc_feature order(4357974..4357982,4358043..4358045,4358052..4358063, 4358070..4358081,4358103..4358111,4358223..4358225, 4358235..4358237,4358241..4358243,4358256..4358258, 4358265..4358267,4358271..4358273,4358319..4358327, 4358331..4358333) /gene="birA" /locus_tag="STM4138" /note="active site" /db_xref="CDD:319741" misc_feature 4358256..4358258 /gene="birA" /locus_tag="STM4138" /note="catalytic site [active]" /db_xref="CDD:319741" gene complement(4358707..4359670) /gene="coaA" /locus_tag="STM4139" /db_xref="GeneID:1255665" CDS complement(4358707..4359657) /gene="coaA" /locus_tag="STM4139" /EC_number="2.7.1.33" /note="pantothenate kinase. (SW:COAA_SALTY)" /codon_start=1 /transl_table=11 /product="pantothenate kinase" /protein_id="NP_463013.1" /db_xref="GeneID:1255665" /translation="MSIKEQSLMTPYLQFDRSQWAALRDSVPMTLTEDEIAQLKGINE DLSLEEVAEIYLPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKS TTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGFPESYDMHRLVKFV SDLKSGVPNVTAPVYSHLIYDVIPEGDKTVAQPDILILEGLNVLQSGMDYPHDPHHVF VSDFVDFSIYVDAPEELLQTWYINRFLKFREGAFTDPDSYFHNYAKLSKEEAVNTATS LWKEINWLNLKQNILPTRERASLIMTKSANHAVEQVRLRK" misc_feature complement(4358710..4359579) /gene="coaA" /locus_tag="STM4139" /note="pantothenate kinase, bacterial type; Region: panK_bact; TIGR00554" /db_xref="CDD:273134" misc_feature complement(order(4358737..4358739,4358749..4358751, 4358929..4358931,4358941..4358943,4359346..4359357, 4359364..4359366)) /gene="coaA" /locus_tag="STM4139" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:238983" misc_feature complement(order(4358737..4358739,4358917..4358919, 4358929..4358931,4359127..4359129,4359340..4359342, 4359352..4359357)) /gene="coaA" /locus_tag="STM4139" /note="CoA-binding site [chemical binding]; other site" /db_xref="CDD:238983" misc_feature complement(order(4359061..4359063,4359352..4359354)) /gene="coaA" /locus_tag="STM4139" /note="Mg2+-binding site [ion binding]; other site" /db_xref="CDD:238983" regulatory complement(4359665..4359670) /regulatory_class="ribosome_binding_site" /gene="coaA" /locus_tag="STM4139" /note="putative RBS for coaA; RegulonDB:STMS1H004059" gene complement(4359738..4359842) /locus_tag="STM4140" /note="pseudogene; no in-frame start" /pseudo /db_xref="GeneID:1255666" gene complement(4359866..4360039) /locus_tag="STM4141" /db_xref="GeneID:1255667" CDS complement(4359866..4360039) /locus_tag="STM4141" /note="similar to E. coli orf, hypothetical protein (AAC76953.1); Blastp hit to AAC76953.1 (51 aa), 55% identity in aa 1 - 40" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463014.1" /db_xref="GeneID:1255667" /translation="METCVLMQLKNCIKCSIAHILRYKRQKCSNFKQESINFRHFTDR LTRIRRGISTLRR" gene 4360059..4360131 /gene="thrU" /locus_tag="STM4142" /db_xref="GeneID:1255668" tRNA 4360059..4360131 /gene="thrU" /locus_tag="STM4142" /product="tRNA-Thr" /db_xref="GeneID:1255668" gene 4360143..4360224 /gene="tyrU" /locus_tag="STM4143" /db_xref="GeneID:1255669" tRNA 4360143..4360224 /gene="tyrU" /locus_tag="STM4143" /product="tRNA-Tyr" /db_xref="GeneID:1255669" gene 4360344..4360415 /gene="glyT" /locus_tag="STM4144" /db_xref="GeneID:1255670" tRNA 4360344..4360415 /gene="glyT" /locus_tag="STM4144" /product="tRNA-Gly" /db_xref="GeneID:1255670" gene 4360425..4360497 /gene="thrT" /locus_tag="STM4145" /db_xref="GeneID:1255671" tRNA 4360425..4360497 /gene="thrT" /locus_tag="STM4145" /product="tRNA-Thr" /db_xref="GeneID:1255671" gene 4360604..4361800 /gene="tufB" /locus_tag="STM4146" /db_xref="GeneID:1255672" regulatory 4360604..4360609 /regulatory_class="ribosome_binding_site" /gene="tufB" /locus_tag="STM4146" /note="putative RBS for tufB; RegulonDB:STMS1H004063" CDS 4360616..4361800 /gene="tufB" /locus_tag="STM4146" /EC_number="3.6.5.3" /note="duplicate of tufA; elongation factor TU (EF-TU). (SW:EFTU_SALTY)" /codon_start=1 /transl_table=11 /product="protein chain elongation factor EF-Tu" /protein_id="NP_463015.1" /db_xref="GeneID:1255672" /translation="MSKEKFERTKPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAA RAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGA ILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLSQ YDFPGDDTPIVRGSALKALEGDAEWEAKIIELAGFLDSYIPEPERAIDKPFLLPIEDV FSISGRGTVVTGRVERGIIKVGEEVEIVGIKETQKSTCTGVEMFRKLLDEGRAGENVG VLLRGIKREEIERGQVLAKPGTIKPHTKFESEVYILSKDEGGRHTPFFKGYRPQFYFR TTDVTGTIELPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAIREGGRTVGAGVVAKV LG" misc_feature 4360616..4361794 /gene="tufB" /locus_tag="STM4146" /note="elongation factor Tu; Reviewed; Region: PRK00049" /db_xref="CDD:234596" gene 4362019..4362413 /gene="secE" /locus_tag="STM4147" /db_xref="GeneID:1255673" regulatory 4362019..4362024 /regulatory_class="ribosome_binding_site" /gene="secE" /locus_tag="STM4147" /note="putative RBS for secE; RegulonDB:STMS1H004064" CDS 4362030..4362413 /gene="secE" /locus_tag="STM4147" /note="similar to E. coli preprotein translocase (AAC76955.1); Blastp hit to AAC76955.1 (127 aa), 96% identity in aa 1 - 127" /codon_start=1 /transl_table=11 /product="preprotein translocase IISP family, membrane subunit" /protein_id="NP_463016.1" /db_xref="GeneID:1255673" /translation="MSANTEAQGSGRGLEAMKWIVVAILLIVAIVGNYLYRDMMLPLR ALAVVILIAAAGGVALLTTKGKATVAFAREARTEVRKVIWPTRQETLHTTLIVAAVTA VMSLILWGLDGILVRLVSFITGLRF" misc_feature 4362126..4362401 /gene="secE" /locus_tag="STM4147" /note="preprotein translocase subunit SecE; Reviewed; Region: secE; PRK05740" /db_xref="CDD:235587" gene 4362404..4362960 /gene="nusG" /locus_tag="STM4148" /db_xref="GeneID:1255674" regulatory 4362404..4362409 /regulatory_class="ribosome_binding_site" /gene="secE" /locus_tag="STM4147" /note="putative RBS for nusG; RegulonDB:STMS1H004065" CDS 4362415..4362960 /gene="nusG" /locus_tag="STM4148" /note="similar to E. coli component in transcription antitermination (AAC76956.1); Blastp hit to AAC76956.1 (181 aa), 99% identity in aa 1 - 181" /codon_start=1 /transl_table=11 /product="component in transcription antitermination" /protein_id="NP_463017.1" /db_xref="GeneID:1255674" /translation="MSEAPKKRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMV PTEEVVEIRGGQRRKSERKFFPGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAP ISDKEVDAIMNRLQQVGDKPRPKTLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKV SVSIFGRATPVELDFSQVEKA" misc_feature 4362439..4362954 /gene="nusG" /locus_tag="STM4148" /note="transcription termination/antitermination factor NusG; Region: nusG; TIGR00922" /db_xref="CDD:273341" gene 4363106..4363546 /gene="rplK" /locus_tag="STM4149" /db_xref="GeneID:1255675" regulatory 4363106..4363111 /regulatory_class="ribosome_binding_site" /gene="rplK" /locus_tag="STM4149" /note="putative RBS for rplK; RegulonDB:STMS1H004066" CDS 4363118..4363546 /gene="rplK" /locus_tag="STM4149" /note="similar to E. coli 50S ribosomal subunit protein L11 (AAC76957.1); Blastp hit to AAC76957.1 (142 aa), 100% identity in aa 1 - 142" /codon_start=1 /transl_table=11 /product="50 S ribosomal subunit protein L11" /protein_id="NP_463018.1" /db_xref="GeneID:1255675" /translation="MAKKVQAYVKLQVAAGMANPSPPVGPALGQQGVNIMEFCKAFNA KTDSIEKGLPIPVVITVYADRSFTFVTKTPPAAVLLKKAAGIKSGSGKPNKDKVGKIS RAQLQEIAQTKAADMTGADIEAMTRSIEGTARSMGLVVED" misc_feature 4363118..4363543 /gene="rplK" /locus_tag="STM4149" /note="50S ribosomal protein L11; Validated; Region: rplK; PRK00140" /db_xref="CDD:234661" misc_feature order(4363145..4363147,4363205..4363207,4363340..4363348, 4363358..4363360,4363379..4363381,4363454..4363456, 4363469..4363477,4363487..4363489,4363496..4363501, 4363508..4363513,4363517..4363525) /gene="rplK" /locus_tag="STM4149" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:100101" misc_feature order(4363145..4363147,4363289..4363291,4363295..4363306, 4363316..4363318,4363322..4363327,4363457..4363462, 4363469..4363474) /gene="rplK" /locus_tag="STM4149" /note="L7/L12 interface [polypeptide binding]; other site" /db_xref="CDD:100101" misc_feature order(4363193..4363195,4363205..4363207) /gene="rplK" /locus_tag="STM4149" /note="putative thiostrepton binding site [active]" /db_xref="CDD:100101" misc_feature order(4363397..4363399,4363406..4363408) /gene="rplK" /locus_tag="STM4149" /note="L25 interface [polypeptide binding]; other site" /db_xref="CDD:100101" gene 4363535..4364254 /gene="rplA" /locus_tag="STM4150" /db_xref="GeneID:1255676" regulatory 4363535..4363540 /regulatory_class="ribosome_binding_site" /gene="rplK" /locus_tag="STM4149" /note="putative RBS for rplA; RegulonDB:STMS1H004067" CDS 4363550..4364254 /gene="rplA" /locus_tag="STM4150" /note="regulates synthesis of L1 and L11; similar to E. coli 50S ribosomal subunit protein L1, regulates synthesis of L1 and L11 (AAC76958.1); Blastp hit to AAC76958.1 (234 aa), 98% identity in aa 1 - 234" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L1" /protein_id="NP_463019.1" /db_xref="GeneID:1255676" /translation="MAKLTKRMRVIREKVDATKQYDINEAIALLKELATAKFNESVDV AVNLGIDARKSDQNVRGATVLPHGTGRSVRVAVFTQGPNAEAAKAAGAELVGMEDLAD QIKKGEMNFDVVIASPDAMRVVGQLGQVLGPRGLMPNPKVGTVTPNVAEAVKNAKAGQ VRYRNDKNGIIHTTIGKVDFDADKLKENLEALLVALKKAKPSQAKGVYIKKVSISTTM GAGVAVDQAGLSASAN" misc_feature 4363550..4364227 /gene="rplA" /locus_tag="STM4150" /note="Ribosomal protein L1 [Translation, ribosomal structure and biogenesis]; Region: RplA; COG0081" /db_xref="CDD:439851" gene 4364660..4365171 /gene="rplJ" /locus_tag="STM4151" /db_xref="GeneID:1255677" regulatory 4364660..4364665 /regulatory_class="ribosome_binding_site" /gene="rplJ" /locus_tag="STM4151" /note="putative RBS for rplJ; RegulonDB:STMS1H004068" CDS 4364674..4365171 /gene="rplJ" /locus_tag="STM4151" /note="50S ribosomal protein L10 (L8). (SW:RL10_SALTY)" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L10" /protein_id="NP_463020.1" /db_xref="GeneID:1255677" /translation="MALNLQDKQAIVAEVSEVAKGALSAVVADSRGVTVDKMTELRKA GREAGVYMRVVRNTLLRRVVEGTQFECLKDTFVGPTLIAYSMEHPGAAARLFKEFAKA NAKFEVKAAAFEGELIPASQIDRLATLPTYEEAIARLMATMKEASAGKLVRTLAAVRD AKEAA" misc_feature 4364680..4365165 /gene="rplJ" /locus_tag="STM4151" /note="50S ribosomal protein L10; Reviewed; Region: rplJ; PRK00099" /db_xref="CDD:234632" misc_feature order(4364695..4364700,4364707..4364709,4364839..4364850, 4364857..4364859) /gene="rplJ" /locus_tag="STM4151" /note="23S rRNA interface [nucleotide binding]; other site" /db_xref="CDD:240223" misc_feature order(4364941..4364943,4365010..4365012,4365019..4365021, 4365067..4365069,4365076..4365081,4365088..4365093, 4365097..4365105,4365109..4365117,4365121..4365129, 4365136..4365141,4365145..4365150) /gene="rplJ" /locus_tag="STM4151" /note="Interface with L7/L12 ribosomal proteins [polypeptide binding]; other site" /db_xref="CDD:240223" gene 4365224..4365603 /gene="rplL" /locus_tag="STM4152" /db_xref="GeneID:1255678" regulatory 4365224..4365229 /regulatory_class="ribosome_binding_site" /gene="rplL" /locus_tag="STM4152" /note="putative RBS for rplL; RegulonDB:STMS1H004069" CDS 4365238..4365603 /gene="rplL" /locus_tag="STM4152" /note="5Ss ribosomal protein L7/L12 (L8). (SW:RL7_SALTY)" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L7/L12" /protein_id="NP_463021.1" /db_xref="GeneID:1255678" /translation="MSITKDQIIEAVSAMSVMDVVELISAMEEKFGVSAAAAVAVAAG PAEAAEEKTEFDVILKAAGANKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKD DAEALKKSLEEAGAEVEVK" misc_feature 4365238..4365600 /gene="rplL" /locus_tag="STM4152" /note="Ribosomal protein L7/L12 [Translation, ribosomal structure and biogenesis]; Region: RplL; COG0222" /db_xref="CDD:439992" misc_feature order(4365244..4365246,4365283..4365291,4365298..4365303, 4365310..4365312,4365319..4365321,4365358..4365366, 4365394..4365399,4365460..4365462,4365466..4365471, 4365475..4365477,4365481..4365486,4365526..4365531, 4365535..4365537,4365544..4365546) /gene="rplL" /locus_tag="STM4152" /note="core dimer interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(4365253..4365255,4365262..4365264,4365274..4365276, 4365313..4365315,4365328..4365330) /gene="rplL" /locus_tag="STM4152" /note="peripheral dimer interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(4365295..4365297,4365304..4365309,4365319..4365321, 4365328..4365330) /gene="rplL" /locus_tag="STM4152" /note="L10 interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(4365433..4365438,4365445..4365450,4365457..4365459, 4365478..4365483,4365490..4365492) /gene="rplL" /locus_tag="STM4152" /note="L11 interface [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(4365436..4365438,4365448..4365450,4365457..4365459, 4365478..4365483,4365490..4365492) /gene="rplL" /locus_tag="STM4152" /note="putative EF-Tu interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" misc_feature order(4365436..4365438,4365445..4365450,4365457..4365459) /gene="rplL" /locus_tag="STM4152" /note="putative EF-G interaction site [polypeptide binding]; other site" /db_xref="CDD:100102" gene 4365911..4369949 /gene="rpoB" /locus_tag="STM4153" /db_xref="GeneID:1255679" regulatory 4365911..4365916 /regulatory_class="ribosome_binding_site" /gene="rpoB" /locus_tag="STM4153" /note="putative RBS for rpoB; RegulonDB:STMS1H004070" CDS 4365921..4369949 /gene="rpoB" /locus_tag="STM4153" /EC_number="2.7.7.6" /note="DNA-directed RNA polymerase beta chain. (SW:RPOB_SALTY)" /codon_start=1 /transl_table=11 /product="RNA polymerase, beta subunit" /protein_id="NP_463022.1" /db_xref="GeneID:1255679" /translation="MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPE GQYGLEAAFRSVFPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRL VIYEREAPEGTVKDIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSD KGKTHSSGKVLYNARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTE QILDLFFEKVVFEIRDNKLQMELIPERLRGETASFDIEANGKVYVEKGRRITARHIRQ LEKDDIKHIEVPVEYIAGKVVSKDYVDESTGELICAANMELSLDLLAKLSQSGHKRIE TLFTNDLDHGPYISETVRVDPTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSE DRYDLSAVGRMKFNRSLLRDEIEGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGN RRIRSVGEMAENQFRVGLVRVERAVKERLSLGDLDTLMPQDMINAKPISAAVKEFFGS SQLSQFMDQNNPLSEITHKRRISALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEG PNIGLINSLSVYAQTNEYGFLETPYRRVVDGVVTDEIHYLSAIEEGNYVIAQANSNLD DEGHFVEDLVTCRSKGESSLFSRDQVDYMDVSTQQVVSVGASLIPFLEHDDANRALMG ANMQRQAVPTLRADKPLVGTGMERAVAVDSGVTAVAKRGGTVQYVDASRIVIKVNEDE MYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLGEPVERGDVLADGPSTDLGELALGQ NMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQELACVSRDTKLGPEEITADIPN VGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQLTPEEKLLRAIFGEKASDVK DSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLKQAKKDLSEELQILEAGLF SRIRAVLVSSGVEAEKLDKLPRDRWLELGLTDEEKQNQLEQLAEQYDELKHEFEKKLE AKRRKITQGDDLAPGVLKIVKVYLAVKRRIQPGDKMAGRHGNKGVISKINPIEDMPYD ENGTPVDIVLNPLGVPSRMNIGQILETHLGMAAKGIGDKINAMLKQQQEVAKLREFIQ RAYDLGADVRQKVDLSTFSDDEVLRLAENLRKGMPIATPVFDGAKEAEIKELLKLGDL PTSGQITLFDGRTGEQFERPVTVGYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGK AQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMYKNIVDGNHQMEPGMP ESFNVLLKEIRSLGINIELEDE" misc_feature 4365921..4369946 /gene="rpoB" /locus_tag="STM4153" /note="DNA-directed RNA polymerase subunit beta; Reviewed; Region: rpoB; PRK00405" /db_xref="CDD:234749" misc_feature 4368834..4369007 /gene="rpoB" /locus_tag="STM4153" /note="high mobility group (HMG)-box domain superfamily; Region: HMG-box_SF; cl00082" /db_xref="CDD:469606" gene 4370012..4374249 /gene="rpoC" /locus_tag="STM4154" /db_xref="GeneID:1255680" regulatory 4370012..4370017 /regulatory_class="ribosome_binding_site" /gene="rpoC" /locus_tag="STM4154" /note="putative RBS for rpoC; RegulonDB:STMS1H004071" CDS 4370026..4374249 /gene="rpoC" /locus_tag="STM4154" /EC_number="2.7.7.6" /note="similar to E. coli RNA polymerase, beta prime subunit (AAC76962.1); Blastp hit to AAC76962.1 (1407 aa), 98% identity in aa 1 - 1407" /codon_start=1 /transl_table=11 /product="RNA polymerase, beta prime subunit" /protein_id="NP_463023.1" /db_xref="GeneID:1255680" /translation="MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETI NYRTFKPERDGLFCARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERM GHIELASPTAHIWFLKSLPSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQIL TEEQYLDALEEFGDEFDAKMGAEAIQALLKSMDLEQECETLREELNETNSETKRKKLT KRIKLLEAFVQSGNKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRN NRLKRLLDLAAPDIIVRNEKRMLQEAVDALLDNGRRGRAITGSNKRPLKSLADMIKGK QGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALELFKPFIYGKLELRGLAT TIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLH PLVCAAYNADFDGDQMAVHVPLTLEAQLEARALMMSTNNILSPANGEPIIVPSQDVVL GLYYMTRDCVNAKGEGMVLTGPKEAERIYRAGLASLHARVKVRITEYEKDENGEFVAH TSLKDTTVGRAILWMIVPKGLPFSIVNQALGKKAISKMLNTCYRILGLKPTVIFADQT MYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAEVAEIQEQFQSGLVTAGERYNKV IDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFNSIYMMADSGARGSAAQIRQL AGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARKGLADTALKTANSGYLTR RLVDVAQDLVVTEDDCGTHEGILMTPVIEGGDVKEPLRDRVLGRVTAEDVLKPGTADI LVPRNTLLHEQWCDLLEANSVDAVKVRSVVSCDTDFGVCAHCYGRDLARGHIINKGEA IGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIKLSNVKSVVNSSGK LVITSRNTELKLIDEFGRTKESYKVPYGAVMAKGDGEQVAGGETVANWDPHTMPVITE VSGFIRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKIVDAQGNDV LIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGLPRVADLFE ARRPKEPAILAEIAGIVSFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFEGERV ERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQMLR KATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFI SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGEQ PATPQVTAEDASASLAELLNAGLGGSDNE" misc_feature 4370071..4374168 /gene="rpoC" /locus_tag="STM4154" /note="DNA-directed RNA polymerase subunit beta'; Provisional; Region: PRK00566" /db_xref="CDD:234794" gene 4374291..4374614 /locus_tag="STM4155" /db_xref="GeneID:1255681" CDS 4374291..4374614 /locus_tag="STM4155" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463024.1" /db_xref="GeneID:1255681" /translation="MLDTEFRVACLQGKKMPAIISLIYLMFSLLVFTKKITISNVLSA FLLFLSLYILHHKSLLIFIYCLIIIVATAILHRVKTSADKKAVFYFSMPCWLLVLSVI ININE" gene complement(4374620..4374969) /locus_tag="STM4156" /db_xref="GeneID:1255682" CDS complement(4374620..4374964) /locus_tag="STM4156" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463025.1" /db_xref="GeneID:1255682" /translation="MLQKKTNPMIKNFNFEYCGFSTFITPVDGVGGILVKWLSNKHNV IVPTPYTFGQDPIPGVNLYRNTKAKFVMANGGNSLPCAMAKYNTKTGQFIHITSDNDF SPIIRETRVMKK" regulatory complement(4374964..4374969) /regulatory_class="ribosome_binding_site" /locus_tag="STM4156" /note="putative RBS for STM4156; RegulonDB:STMS1H004072" gene 4375357..4376373 /locus_tag="STM4157" /db_xref="GeneID:1255683" regulatory 4375357..4375362 /regulatory_class="ribosome_binding_site" /locus_tag="STM4157" /note="putative RBS for STM4157; RegulonDB:STMS1H004073" CDS 4375363..4376373 /locus_tag="STM4157" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463026.1" /db_xref="GeneID:1255683" /translation="MIPPLNRYVPALSKNELVKTVTNRDIQFTSFNGKDYPLCFLDEK TPLLFQWFERNPARFGKNDIPIINTEKNPYLNNIIKAATIEKERLIGIFVDGDFFPGQ KDAFSKLEYDYENIKVIYRNDIDFSMYDKKLSEIYMENISKQESMPEEKRDCHLLQLL KKELSDIQEGNDSLIKSYLLDKGHGWFDFYRNMAMLKAGQLFLEADKVGCYDLSTNSG CIYLDADMIITEKLGGIYIPDGIAVHVERIDGRASMENGIIAVDRNNHPALLAGLEIM HTKFDADPYSDGVCNGIRKHFNYSLNEDYNSFCDFIEFKHDNIIMNTSQFTQSSWARH VQ" misc_feature 4375363..4376370 /locus_tag="STM4157" /note="type III secretion system effector arginine glycosyltransferase SseK1; Region: PRK15384" /db_xref="CDD:185282" gene 4376696..4376884 /locus_tag="STM4158" /db_xref="GeneID:1255684" CDS 4376696..4376884 /locus_tag="STM4158" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463027.1" /db_xref="GeneID:1255684" /translation="MGSPLIPVVLGHHFMDKNDQQTRLEEGPPAKLQSGTLPENFKFT AISIIQWPAPGRQLLMKG" gene complement(4377035..4378182) /gene="thiH" /locus_tag="STM4159" /db_xref="GeneID:1255685" CDS complement(4377035..4378168) /gene="thiH" /locus_tag="STM4159" /note="deoxyxylulose-5-P + thi-S-COSH + tyrosine = 4-methyl-5-(beta-hydroxyethyl)thiazole-P + 4-hydroxy-benzyl-alcohol + C1 of tyrosine; similar to E. coli thiamin biosynthesis, thiazole moiety (AAC76964.1); Blastp hit to AAC76964.1 (377 aa), 89% identity in aa 1 - 375" /codon_start=1 /transl_table=11 /product="thiamine biosynthesis protein, thiazole moiety" /protein_id="NP_463028.1" /db_xref="GeneID:1255685" /translation="MKTFTDRWRQLEWDDIRLRINGKTAADVERALNAAHLSRDDLMA LLSPAAADYLEPIAQRAQRLTRQRFGNTVSFYVPLYLSNLCANDCTYCGFSMSNRIKR KTLDEVDIQRECDAIRKLGFEHLLLVTGEHQAKVGMDYFRRHLPTIRRQFSSLQMEVQ PLSQENYAELKTLGIDGVMVYQETYHEAIYAQHHLKGKKQDFFWRLETPDRLGRAGID KIGLGALIGLSDNWRVDCYMVAEHLLWMQKHYWQSRYSVSFPRLRPCTGGVEPASVMD EKQLVQTICAFRLLAPEIELSLSTRESPWFRDHVIPLAINNVSAFSKTQPGGYADDHP ELEQFSPHDARRPETVASALSAQGLQPVWKDWDSWLGRASQTR" misc_feature complement(4377065..4378162) /gene="thiH" /locus_tag="STM4159" /note="thiazole biosynthesis protein ThiH; Region: thiH; TIGR02351" /db_xref="CDD:131404" gene complement(4378165..4378947) /gene="thiG" /locus_tag="STM4160" /db_xref="GeneID:1255686" CDS complement(4378165..4378935) /gene="thiG" /locus_tag="STM4160" /note="deoxyxylulose-5-P + thi-S-COSH + tyrosine = 4-methyl-5-(beta-hydroxyethyl)thiazole-P + 4-hydroxy-benzyl-alcohol + C1 of tyrosine; similar to E. coli thiamin biosynthesis, thiazole moiety (AAC76965.1); Blastp hit to AAC76965.1 (281 aa), 92% identity in aa 26 - 281" /codon_start=1 /transl_table=11 /product="thiamine biosynthesis protein, thiazole moiety" /protein_id="NP_463029.1" /db_xref="GeneID:1255686" /translation="MLRIADKTFDSHLFTGTGKFASSQLMVEAIRASGSQLVTLAMKR VDLRQHNDAILAPLIEAGVTLLPNTSGAKTAEEAIFAAQLAREALGTHWLKLEIHPDA RWLLPDPIETLKAAEALVKQGFVVLPYCGADPVLCKRLEEVGCAAVMPLGAPIGSNQG LETKAMLEIIIQQSTVPVVVDAGIGVPSHAAQALEMGADAVLVNTAIAVADDPVMMAT AFRLAVEAGVLARQAVPGNRSTYANATSPLTGFLEALA" misc_feature complement(4378174..4378935) /gene="thiG" /locus_tag="STM4160" /note="Thiazole synthase ThiGH, ThiG subunit (thiamin biosynthesis) [Coenzyme transport and metabolism]; Region: ThiG; COG2022" /db_xref="CDD:441625" regulatory complement(4378177..4378182) /regulatory_class="ribosome_binding_site" /gene="thiG" /locus_tag="STM4160" /note="putative RBS for thiH; RegulonDB:STMS1H004074" gene complement(4378937..4379143) /locus_tag="STM4161" /db_xref="GeneID:1255687" CDS complement(4378937..4379137) /locus_tag="STM4161" /codon_start=1 /transl_table=11 /product="putative protein involved in thiamine biosynthesis" /protein_id="NP_463030.1" /db_xref="GeneID:1255687" /translation="MQIQFNDEPMQCAAGQTVSELLTQLNQLKPGAALALNQQILPRE QWQQQIVQEGDQILFFQVIAGG" misc_feature complement(4378940..4379137) /locus_tag="STM4161" /note="Sulfur carrier protein ThiS (thiamine biosynthesis) [Coenzyme transport and metabolism]; Region: ThiS; COG2104" /db_xref="CDD:441707" regulatory complement(4378942..4378947) /regulatory_class="ribosome_binding_site" /locus_tag="STM4161" /note="putative RBS for thiG; RegulonDB:STMS1H004075" gene complement(4379118..4379888) /gene="thiF" /locus_tag="STM4162" /db_xref="GeneID:1255688" CDS complement(4379118..4379876) /gene="thiF" /locus_tag="STM4162" /note="catalyzes the adenylation of thisS as part of thiazole synthesis; with ThiI it catalyses the transfer of sulfur from cysteine to the ThiS enzyme; similar to E. coli thiamin biosynthesis, thiazole moiety (AAC76966.1); Blastp hit to AAC76966.1 (245 aa), 84% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="thiamine biosynthesis protein, thiazole moiety" /protein_id="NP_463031.1" /db_xref="GeneID:1255688" /translation="MNDHDFMRYSRQILLGDIAIEGQQKLLNSHVLIVGLGGLGSPAA LYLAGAGIGKLTLVDDDDVHLSNLQRQILFTTDDIAHPKAQAAKLRLAQLNPGSKLIV LQQRLTGDVLKNAVAHADVVLDCTDNMATRQEINAACVALNTPLISASAVGFGGQLMV LTPPWEQGCYRCLWPDDVEPERNCRTAGIVGPVVGVMGTLQALEAIKLLSGIETPSGE LRLFDGKTSQWRSLALRHASGCPVCGGQHADSVQ" misc_feature complement(4379142..4379873) /gene="thiF" /locus_tag="STM4162" /note="Molybdopterin or thiamine biosynthesis adenylyltransferase [Coenzyme transport and metabolism]; Region: ThiF; COG0476" /db_xref="CDD:440244" regulatory complement(4379138..4379143) /regulatory_class="ribosome_binding_site" /locus_tag="STM4161" /note="putative RBS for STM4161; RegulonDB:STMS1H004076" gene complement(4379869..4380515) /gene="thiE" /locus_tag="STM4163" /db_xref="GeneID:1255689" CDS complement(4379869..4380504) /gene="thiE" /locus_tag="STM4163" /EC_number="2.5.1.3" /note="similar to E. coli thiamin biosynthesis, thiazole moiety (AAC76967.1); Blastp hit to AAC76967.1 (211 aa), 89% identity in aa 1 - 211; thiamine phosphate synthase" /codon_start=1 /transl_table=11 /product="thiamine phosphate pyrophosphorylase" /protein_id="NP_463032.1" /db_xref="GeneID:1255689" /translation="MYQPDFPTVPFRLGLYPVVDSVEWIERLLESGVRTIQLRIKDKR DEEVEADVIAAIALGRRYNARLFINDYWRLAIKHRAYGVHLGQEDLETTDLKAIQAAG LRLGVSTHDDMEIDVALAAKPSYIALGHVFPTQTKQMPSAPQGLAQLASHIERLADYP TVAIGGISLERAPAVLATGVGSIAVVSAITQAADWREATAELLAIAGVGDE" misc_feature complement(4379872..4380504) /gene="thiE" /locus_tag="STM4163" /note="thiamine phosphate synthase; Region: PRK03512" /db_xref="CDD:179586" misc_feature complement(order(4379944..4379955,4380007..4380009, 4380019..4380021,4380097..4380099,4380103..4380105, 4380124..4380126,4380130..4380132,4380181..4380183, 4380253..4380255,4380388..4380390,4380394..4380396, 4380451..4380453,4380457..4380459)) /gene="thiE" /locus_tag="STM4163" /note="thiamine phosphate binding site [chemical binding]; other site" /db_xref="CDD:238317" misc_feature complement(order(4379944..4379949,4380007..4380009, 4380094..4380099,4380103..4380105,4380181..4380183, 4380238..4380240,4380295..4380300,4380382..4380384, 4380388..4380390,4380394..4380396)) /gene="thiE" /locus_tag="STM4163" /note="active site" /db_xref="CDD:238317" misc_feature complement(order(4380094..4380096,4380181..4380183, 4380238..4380240,4380247..4380249,4380295..4380300, 4380382..4380384,4380388..4380390)) /gene="thiE" /locus_tag="STM4163" /note="pyrophosphate binding site [ion binding]; other site" /db_xref="CDD:238317" regulatory complement(4379883..4379888) /regulatory_class="ribosome_binding_site" /gene="thiE" /locus_tag="STM4163" /note="putative RBS for thiF; RegulonDB:STMS1H004077" gene complement(4380504..4382411) /gene="thiC" /locus_tag="STM4164" /db_xref="GeneID:1255690" CDS complement(4380504..4382399) /gene="thiC" /locus_tag="STM4164" /note="4-amino-5-hydroxymethyl-2-methylpyrimidine-P; similar to E. coli thiamin biosynthesis, pyrimidine moiety (AAC76968.1); Blastp hit to AAC76968.1 (631 aa), 93% identity in aa 1 - 631" /codon_start=1 /transl_table=11 /product="5'-phosphoryl-5-aminoimidazole" /protein_id="NP_463033.1" /db_xref="GeneID:1255690" /translation="MSTTTLTRREQRAKAQHFIDTLEGTAFPNSKRIYVTGSQHDIRV PMREIQLSPTLIGGSKDNPQFEENEAVPVYDTSGPYGDPEVAINVQQGLAKLRQPWID ARNDSEELDDRSSAYTRERLADDGLDDLRFTGLLTPKRAKAGKRVTQLHYARKGIVTP EMEFIAIRENMGRERIRSEVLRHQHPGMNFGARLPENITPEFVRDEVAAGRAIIPANI NHPESEPMIIGRNFLVKVNANIGNSAVTSSIEEEVEKLVWSTRWGADTVMDLSTGRYI HETREWILRNSPVPIGTVPIYQALEKVNGIAEDLTWEAFRDTLLEQAEQGVDYFTIHA GVLLRYVPMTAKRLTGIVSRGGSIMAKWCLSHHKENFLFEHFREICEICAAYDVSLSL GDGLRPGSIQDANDEAQFSELHTLGELTKIAWEYDVQVMIEGPGHVPMHMIQRNMTEE LESCHEAPFYTLGPLTTDIAPGYDHFTSGIGAAMIGWFGCAMLCYVTPKEHLGLPNKE DVKQGLITYKIAAHAADLAKGHPGAQIRDNAMSKARFEFRWEDQFNLALDPFTARAYH DETLPQESGKVAHFCSMCGPKFCSMKISQEVRDYAAAQTIEIGMADMSEDFRAKGGEI YLKREEA" misc_feature complement(4380519..4382375) /gene="thiC" /locus_tag="STM4164" /note="thiamine biosynthesis protein ThiC; Provisional; Region: PRK09284" /db_xref="CDD:236451" regulatory complement(4380510..4380515) /regulatory_class="ribosome_binding_site" /gene="thiE" /locus_tag="STM4163" /note="putative RBS for thiE; RegulonDB:STMS1H004078" regulatory complement(4382406..4382411) /regulatory_class="ribosome_binding_site" /gene="thiC" /locus_tag="STM4164" /note="putative RBS for thiC; RegulonDB:STMS1H004079" gene complement(4382763..4383263) /gene="rsd" /locus_tag="STM4165" /db_xref="GeneID:1255691" CDS complement(4382763..4383251) /gene="rsd" /locus_tag="STM4165" /note="contains binding activity to the major sigma subunit of RNAP; similar to E. coli putative transcriptional regulator (AAC76969.1); Blastp hit to AAC76969.1 (158 aa), 88% identity in aa 1 - 158" /codon_start=1 /transl_table=11 /product="regulator of sigma D" /protein_id="NP_463034.1" /db_xref="GeneID:1255691" /translation="MLNQLENLTERVGGSNKLVDRWLDVRKHLLVAYYNLVGIKPGKE SYMRLNEKALDDFCQSLVDYLSAGHFSIYERILHKLEGNGQLLHAAKIWPLLEDNTQR IMDYYDTSLETAIDHDNCLEFQQALSDIGEALEARFVLEDKLIMLVFDAMHDGARVKR PA" misc_feature complement(4382790..4383251) /gene="rsd" /locus_tag="STM4165" /note="sigma D regulator; Region: PRK11718" /db_xref="CDD:236962" regulatory complement(4383258..4383263) /regulatory_class="ribosome_binding_site" /gene="rsd" /locus_tag="STM4165" /note="putative RBS for rsd; RegulonDB:STMS1H004080" gene 4383327..4384117 /gene="yjaD" /locus_tag="STM4166" /db_xref="GeneID:1255692" regulatory 4383327..4383332 /regulatory_class="ribosome_binding_site" /gene="yjaD" /locus_tag="STM4166" /note="putative RBS for yjaD; RegulonDB:STMS1H004081" CDS 4383344..4384117 /gene="yjaD" /locus_tag="STM4166" /note="probably nucleic-acid-binding; NADH pyrophosphatase. (SW:NUDC_SALTY)" /codon_start=1 /transl_table=11 /product="putative NTP pyrophosphohydrolases containing a Zn-finger" /protein_id="NP_463035.1" /db_xref="GeneID:1255692" /translation="MDRIIEKLESGWWIVSHEQKLWLPYGELPHGLAANFDLVGQRAL RIGEWQGEPVWLVLQHRRHDMGSVRQVIDQEAGLFQLAGRGVQLAEFYRSHKFCGYCG HPMHPSKTEWAMLCSHCRERYYPQIAPCIIVAIRREDSILLAQHVRHRNGVHTVLAGF VEVGETLEQAVAREVMEESGIKVKNLRYVTSQPWPFPQSLMTAFMAEYDSGEIVIDPK ELLEANWYRYDDLPLLPPPGTVARRLIEDTVAMCRAEYD" misc_feature 4383344..4384099 /gene="yjaD" /locus_tag="STM4166" /note="NAD(+) diphosphatase; Region: nudC; PRK00241" /db_xref="CDD:234699" gene 4384145..4385222 /gene="hemE" /locus_tag="STM4167" /db_xref="GeneID:1255693" regulatory 4384145..4384150 /regulatory_class="ribosome_binding_site" /gene="hemE" /locus_tag="STM4167" /note="putative RBS for hemE; RegulonDB:STMS1H004082" CDS 4384158..4385222 /gene="hemE" /locus_tag="STM4167" /EC_number="4.1.1.37" /note="similar to E. coli uroporphyrinogen decarboxylase (AAC76971.1); Blastp hit to AAC76971.1 (354 aa), 96% identity in aa 1 - 353" /codon_start=1 /transl_table=11 /product="uroporphyrinogen decarboxylase" /protein_id="NP_463036.2" /db_xref="GeneID:1255693" /translation="MTELKNDRYLRALLRQPVDVTPVWMMRQAGRYLPEYKATRAQAG DFMSLCKNAELACEVTLQPLRRYPLDAAILFSDILTIPDAMGLGLYFEAGEGPRFTAP VTCKADVEKLPIPDPEGELGYVMNAVRTIRRELKGEVPLIGFSGSPWTLATYMVEGGS SKAFTVIKKMMYADPQALHLLLDKLAKSVTLYLNAQIKAGAQSVMIFDTWGGVLTGRD YQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGGGQWLEAMAETGCDALGLDWTTDIA DARRRVGHKVALQGNMDPSMLYAPPARIEDEVATILAGFGQGEGHVFNLGHGIHQDVP PEHAGAFVEAVHRLSAQYHN" misc_feature 4384185..4385198 /gene="hemE" /locus_tag="STM4167" /note="Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors. This reaction...; Region: URO-D; cd00717" /db_xref="CDD:238368" misc_feature order(4384233..4384250,4384263..4384265,4384275..4384277, 4384293..4384295,4384374..4384394,4384428..4384430, 4384443..4384445,4384587..4384589,4384617..4384619, 4384635..4384637,4384776..4384778,4384782..4384787, 4384899..4384901,4385136..4385138) /gene="hemE" /locus_tag="STM4167" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238368" misc_feature order(4384236..4384238,4384248..4384250,4384386..4384388, 4384617..4384619,4384782..4384784,4385136..4385138) /gene="hemE" /locus_tag="STM4167" /note="active site" /db_xref="CDD:238368" gene 4385221..4385903 /gene="nfi" /locus_tag="STM4168" /db_xref="GeneID:1255694" regulatory 4385221..4385226 /regulatory_class="ribosome_binding_site" /gene="nfi" /locus_tag="STM4168" /note="putative RBS for nfi; RegulonDB:STMS1H004083" CDS 4385232..4385903 /gene="nfi" /locus_tag="STM4168" /EC_number="3.1.-.-" /note="deoxyinosine 3'endoduclease; similar to E. coli endonuclease V (deoxyinosine 3'endoduclease) (AAC76972.1); Blastp hit to AAC76972.1 (225 aa), 94% identity in aa 3 - 220" /codon_start=1 /transl_table=11 /product="endonuclease V" /protein_id="NP_463037.1" /db_xref="GeneID:1255694" /translation="MDLASLRAQQIELASSVCREDRLDKDPPAFIGGADVGFEQGGEV TRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQKPDLLFV DGHGISHPRRLGVASHFGLLVDVPTIGVAKKRLCGKFEPLSAEPGALSPLMDKGEQLA WVWRSKARCNPLFIATGHRVSTDSALAWVQRCMKGYRLPEPTRWADAVASGRPAFVRW QEIQR" misc_feature 4385232..4385900 /gene="nfi" /locus_tag="STM4168" /note="deoxyribonuclease V; Region: PRK11617" /db_xref="CDD:236937" misc_feature order(4385334..4385336,4385340..4385345,4385448..4385450, 4385454..4385465,4385538..4385546,4385556..4385558, 4385571..4385576,4385622..4385636,4385847..4385849) /gene="nfi" /locus_tag="STM4168" /note="Active_site [active]" /db_xref="CDD:143472" gene 4385945..4386535 /gene="yjaG" /locus_tag="STM4169" /db_xref="GeneID:1255695" CDS 4385945..4386535 /gene="yjaG" /locus_tag="STM4169" /note="similar to E. coli orf, hypothetical protein (AAC76973.1); Blastp hit to AAC76973.1 (196 aa), 94% identity in aa 1 - 196" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463038.1" /db_xref="GeneID:1255695" /translation="MLQNPIHLRLERLESWQHVTFMACLCERMYPNYAMFCKQTEFGD GQIYRRILDLIWETLTVKDAKVNFDSQLEKFEEAIPAADDYDLYGVYPAIDACVALSE LMHSRLSGETLEHAIEVSKTSITTVAMLEMTQAGREMTDEELKTNPAVEQEWDIQWEI FRLLADCEERDIELIKGLRADLREAGESNIGINFQQ" misc_feature 4385948..4386526 /gene="yjaG" /locus_tag="STM4169" /note="Uncharacterized conserved protein YjaG, DUF416 family [Function unknown]; Region: YjaG; COG3068" /db_xref="CDD:442302" gene 4386711..4386994 /gene="hupA" /locus_tag="STM4170" /db_xref="GeneID:1255696" regulatory 4386711..4386716 /regulatory_class="ribosome_binding_site" /gene="hupA" /locus_tag="STM4170" /note="putative RBS for hupA; RegulonDB:STMS1H004084" CDS 4386722..4386994 /gene="hupA" /locus_tag="STM4170" /note="HU-2; DNA-binding protein HU-alpha (NS2) (HU-2). (SW:DBHA_SALTY)" /codon_start=1 /transl_table=11 /product="DNA-binding protein HU-alpha" /protein_id="NP_463039.1" /db_xref="GeneID:1255696" /translation="MNKTQLIDVIADKAELSKTQAKAALESTLAAITESLKEGDAVQL VGFGTFKVNHRAERTGRNPQTGKEIKIAAANVPAFVSGKALKDAVK" misc_feature 4386722..4386991 /gene="hupA" /locus_tag="STM4170" /note="DNA-binding protein HU-alpha; Region: PRK10753" /db_xref="CDD:138142" misc_feature order(4386737..4386739,4386746..4386751,4386758..4386760, 4386785..4386796,4386800..4386808,4386812..4386820, 4386824..4386829,4386839..4386853,4386860..4386862, 4386944..4386952,4386956..4386958,4386962..4386964, 4386974..4386979) /gene="hupA" /locus_tag="STM4170" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:259853" misc_feature order(4386878..4386880,4386884..4386889,4386893..4386895, 4386899..4386910,4386923..4386928,4386932..4386934) /gene="hupA" /locus_tag="STM4170" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:259853" gene 4387006..4387698 /gene="yjaH" /locus_tag="STM4171" /db_xref="GeneID:1255697" CDS 4387006..4387698 /gene="yjaH" /locus_tag="STM4171" /note="similar to E. coli orf, hypothetical protein (AAC76975.1); Blastp hit to AAC76975.1 (231 aa), 76% identity in aa 1 - 231" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463040.1" /db_xref="GeneID:1255697" /translation="MNSFIEGAHQPLLSVWRRAFLFSGALLLTACSHNASPPPFTASG FAGDHGAVRIWRKDTNDEVHLLSVFSPWHSGSTTTSEYRWQGDTLSLIELNIYSKPPE HIRARFDAHGELSFMQREVGGQKQQLSNDQIALYRYRAEQIRQTSDALRLGRVILRQG RWHADHTVTTCEGETLKPDLDSWAISHIERRQNHSSVEVSVAWLEAPEGSQLLLVANS DFCHWQPQAKSF" misc_feature 4387129..4387683 /gene="yjaH" /locus_tag="STM4171" /note="Protein of unknown function (DUF1481); Region: DUF1481; pfam07356" /db_xref="CDD:429425" gene complement(4387740..4388209) /gene="zraP" /locus_tag="STM4172" /db_xref="GeneID:1255698" CDS complement(4387740..4388195) /gene="zraP" /locus_tag="STM4172" /note="similar to E. coli orf, hypothetical protein (AAC76976.1); Blastp hit to AAC76976.1 (188 aa), 64% identity in aa 48 - 188" /codon_start=1 /transl_table=11 /product="zinc-resistance associated protein" /protein_id="NP_463041.1" /db_xref="GeneID:1255698" /translation="MKRNNKSAIALIALSLLALSSGAAFAGHHWGNNDGMWQQGGSPL TTEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLG QKLDEQRVKRDVAMAQAGIPRGAGMGYGGCGGYGGGYHRGGGHMGMGNW" misc_feature complement(4387827..4388195) /gene="zraP" /locus_tag="STM4172" /note="zinc resistance sensor/chaperone ZraP; Region: zraP; PRK11546" /db_xref="CDD:183189" misc_feature complement(order(4387845..4387847,4387854..4387856, 4387863..4387868,4387875..4387877,4387887..4387889, 4387899..4387901,4387911..4387913,4387920..4387922, 4387932..4387934,4387938..4387940,4387950..4387955, 4387962..4387964,4387974..4387976)) /gene="zraP" /locus_tag="STM4172" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:197366" regulatory complement(4388204..4388209) /regulatory_class="ribosome_binding_site" /gene="zraP" /locus_tag="STM4172" /note="putative RBS for zraP; RegulonDB:STMS1H004085" gene 4388437..4389846 /gene="hydH" /locus_tag="STM4173" /db_xref="GeneID:1255699" regulatory 4388437..4388442 /regulatory_class="ribosome_binding_site" /gene="hydH" /locus_tag="STM4173" /note="putative RBS for hydH; RegulonDB:STMS1H004086" CDS 4388449..4389846 /gene="hydH" /locus_tag="STM4173" /EC_number="2.7.3.-" /note="sensor protein HYDA. (SW:HYDH_SALTY)" /codon_start=1 /transl_table=11 /product="sensory kinase in two component regulatory system with HydG" /protein_id="NP_463042.1" /db_xref="GeneID:1255699" /translation="MSFIRLHKDAAATWLSRLLPAAIFILVGLFSIMVIRDYGRESAA ARQTLLEKGNVLIRALESGTRVGMGMRMHHAQQQTLLEEMAGQPGVLWFAVTDAQGVI ITHSNPGMVGKSLYSPSEMHQLNPGPQERWRRVDVAANGETVPALEIYRQFQPLFGMR GHGMRGHGMARSANDDEPAKQTIFIAFDASELAATQAREWRNTLIVLSALAAVLLATL LAFFWHQRYQRSHRELLDAMKRKEKLVAMGHLAAGVAHEIRNPLSSIKGLAKYFAERT PAGGESHELAQVMAKEADRLNRVVSELLELVKPAHLTLQTVNLNDIITHSLNLVSQDA QSREIQLRFTANETLKRIQADPDRLTQVLLNLYLNAIHAIGRQGTISVEAKESGTDRV IITVTDSGKGIAPDQLEAIFTPYFTTKADGTGLGLAVVQNIIEQHGGAIKVKSIEGKG AVFTIWLPVIARQQD" misc_feature 4388458..4389843 /gene="hydH" /locus_tag="STM4173" /note="two-component system sensor histidine kinase ZraS; Region: PRK10364" /db_xref="CDD:236674" gene 4389838..4391177 /gene="hydG" /locus_tag="STM4174" /db_xref="GeneID:1255700" regulatory 4389838..4389843 /regulatory_class="ribosome_binding_site" /gene="hydG" /locus_tag="STM4174" /note="putative RBS for hydG; RegulonDB:STMS1H004087" CDS 4389852..4391177 /gene="hydG" /locus_tag="STM4174" /note="regulates hydrogenase 3 activity (EBP family); transcriptional regulatory protein HYDG. (SW:HYDG_SALTY)" /codon_start=1 /transl_table=11 /product="response regulator in two-component reguatory system with HydH" /protein_id="NP_463043.1" /db_xref="GeneID:1255700" /translation="MIRGKIDILVVDDDVSHCTILQALLRGWGYNVALAYSGHDALAQ VREKVFDLVLCDVRMAEMDGIATLKEIKALNPAIPILIMTAFSSVETAVEALKAGALD YLIKPLDFDRLQETLEKALAHTRETGAELPSASAAQFGMIGSSPAMQHLLNEIAMVAP SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAF TGADKRREGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVR LIAATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERN RKVVKGFTPQAMDLLIHYDWPGNIRELENAIERAVVLLTGEYISERELPLAIAATPIK TEYSGEIQPLVDVEKEVILAALEKTGGNKTEAARQLGITRKTLLAKLSR" misc_feature 4389852..4391174 /gene="hydG" /locus_tag="STM4174" /note="sigma-54-dependent response regulator transcription factor ZraR; Region: PRK10365" /db_xref="CDD:182412" gene complement(4391174..4392475) /gene="purD" /locus_tag="STM4175" /db_xref="GeneID:1255701" CDS complement(4391174..4392463) /gene="purD" /locus_tag="STM4175" /EC_number="6.3.4.13" /note="GAR synthetase; phosphoribosylamine--glycine ligase. (SW:PUR2_SALTY)" /codon_start=1 /transl_table=11 /product="phosphoribosylglycinamide synthetase" /protein_id="NP_463044.1" /db_xref="GeneID:1255701" /translation="MKVLVIGNGGREHALAWKAAQSPLVDTVFVAPGNAGTALEPALQ NVAIGVTDIPALLSFAQHEKIDLTIVGPEAPLVIGVVDAFRAAGLKIFGPTEGAAQLE GSKAFTKDFLARHQIPTAEYQNFTEIEPALAYLREKGAPIVIKADGLAAGKGVIVAMT LEEAEAAVHDMLAGNAFGDAGHRIVIEEFLDGEEASFIVMVDGEHVLPMATSQDHKRV GNGDTGPNTGGMGAYSPAPVVTDEVHQRTMERIIWPTVKGMAAEGNTYTGFLYAGLMI DKQGNPKVIEFNCRFGDPETQPIMLRMKSDLVDLCLAACDGKLDEKTSEWDERASLGV VIAAGGYPGSYSTGDEIHGLPLEEVADGKVFHAGTKLADDDRVLTSGGRVLCATALGH TVAEAQKRAYALMTDIRWDGSFSRNDIGWRAIEREQN" misc_feature complement(4391186..4392463) /gene="purD" /locus_tag="STM4175" /note="Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]; Region: PurD; COG0151" /db_xref="CDD:439921" regulatory complement(4392470..4392475) /regulatory_class="ribosome_binding_site" /gene="purD" /locus_tag="STM4175" /note="putative RBS for purD; RegulonDB:STMS1H004088" gene complement(4392475..4394201) /gene="purH" /locus_tag="STM4176" /db_xref="GeneID:1255702" CDS complement(4392475..4394064) /gene="purH" /locus_tag="STM4176" /EC_number="2.1.2.3" /EC_number="3.5.4.10" /note="bifunctional; bifunctional purine biosynthesis protein PURH. (SW:PUR9_SALTY); phosphoribosylaminoimidazolecarboxamide formyltransferase" /codon_start=1 /transl_table=11 /product="IMP cyclohydrolase" /protein_id="NP_463045.1" /db_xref="GeneID:1255702" /translation="MQQRRPVRRALLSVSDKAGIIEFAQALSARGVELLSTGGTARLL AEKGLPVTEVSDYTGFPEMMDGRVKTLHPKVHGGILGRRGQDDAIMEQHHIAPIDMVV VNLYPFAETVAREGCSLEDAVENIDIGGPTMVRSAAKNHKDVAIVVKSSDYDAIIKEM DANEGSLTLDTRFDLAIKAFEHTAAYDSMIANYFGSMVPAYHGESKEAAGRFPRTLNL NFIKKQDMRYGENSHQQAAFYIEENVKEASVATAQQVQGKALSYNNIADTDAALECVK EFNEPACVIVKHANPCGVAVSTTILDAYDRAYKTDPTSAFGGIIAFNRELDAETAQAI ISRQFVEVIIAPSATEEALKITAAKQNVRVLTCGQWAQRVPGLDFKRVNGGLLVQDRD LGMVSEAELRVVSKRQPTEQELRDALFCWKVAKFVKSNAIVYAKENMTIGIGAGQMSR VYSAKIAGIKAADEGLEVKGSAMASDAFFPFRDGIDAAAAVGVSCVIQPGGSIRDDEV IAAADEHGIAMIFTDMRHFRH" misc_feature complement(4392478..4394055) /gene="purH" /locus_tag="STM4176" /note="bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional; Region: purH; PRK00881" /db_xref="CDD:234854" regulatory complement(4394072..4394077) /regulatory_class="ribosome_binding_site" /gene="purH" /locus_tag="STM4176" /note="putative RBS for purH; RegulonDB:STMS1H004089" protein_bind complement(4394169..4394185) /gene="purH" /locus_tag="STM4176" /note="putative binding site for PurR, RegulonDB: STMS1H000345" /bound_moiety="PurR" regulatory complement(4394173..4394181) /regulatory_class="minus_10_signal" /gene="purH" /locus_tag="STM4176" /note="putative -10_signal for purH; RegulonDB:STMLTH004652" regulatory complement(4394193..4394201) /regulatory_class="minus_35_signal" /gene="purH" /locus_tag="STM4176" /note="putative -35_signal for purH; RegulonDB:STMLTH004652" gene 4394688..4396232 /gene="rrsE" /locus_tag="STM4177" /db_xref="GeneID:1255703" rRNA 4394688..4396232 /gene="rrsE" /locus_tag="STM4177" /product="16S ribosomal RNA" /db_xref="GeneID:1255703" gene 4396316..4396388 /gene="gltV" /locus_tag="STM4178" /db_xref="GeneID:1255704" tRNA 4396316..4396388 /gene="gltV" /locus_tag="STM4178" /product="tRNA-Sec" /db_xref="GeneID:1255704" gene 4396624..4399617 /gene="rrlE" /locus_tag="STM4179" /db_xref="GeneID:1255705" rRNA 4396624..4399617 /gene="rrlE" /locus_tag="STM4179" /product="23S ribosomal RNA" /db_xref="GeneID:1255705" gene 4399810..4399931 /gene="rrfE" /locus_tag="STM4180" /db_xref="GeneID:1255706" rRNA 4399810..4399931 /gene="rrfE" /locus_tag="STM4180" /product="5S ribosomal RNA" /db_xref="GeneID:1255706" gene complement(4400260..4400708) /gene="yjaB" /locus_tag="STM4181" /db_xref="GeneID:1255707" CDS complement(4400260..4400697) /gene="yjaB" /locus_tag="STM4181" /note="hypothetical protein in rrfE-metA intergenic region. (SW:YJAB_SALTY)" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_463046.1" /db_xref="GeneID:1255707" /translation="MMINIRRSRHEEGEKLIAIWRRSVDATHDFLSNAYRAELEELVS DFLPEAPLWVAVTDQDEPVGFMLLTGEHMDALFIDPDVRGQGIGKMLVEHALTLAPGL TTNVNEQNTQAVGFYKKMGFKVTGRSEVDDLGKPYPLLNLIYP" misc_feature complement(4400263..4400694) /gene="yjaB" /locus_tag="STM4181" /note="putative acetyltransferase; Provisional; Region: PRK10514" /db_xref="CDD:182510" misc_feature complement(order(4400431..4400436,4400464..4400472)) /gene="yjaB" /locus_tag="STM4181" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 4400666..4401783 /gene="metA" /locus_tag="STM4182" /db_xref="GeneID:1255708" regulatory 4400666..4400674 /regulatory_class="minus_35_signal" /gene="metA" /locus_tag="STM4182" /note="putative -35_signal for metA; RegulonDB:STMLTH004653" regulatory 4400690..4400698 /regulatory_class="minus_10_signal" /gene="metA" /locus_tag="STM4182" /note="putative -10_signal for metA; RegulonDB:STMLTH004653" regulatory complement(4400703..4400708) /regulatory_class="ribosome_binding_site" /gene="yjaB" /locus_tag="STM4181" /note="putative RBS for yjaB; RegulonDB:STMS1H004091" protein_bind 4400815..4400825 /gene="metA" /locus_tag="STM4182" /note="putative binding site for MetJ, RegulonDB: STMS1H000286" /bound_moiety="MetJ" protein_bind 4400823..4400833 /gene="metA" /locus_tag="STM4182" /note="putative binding site for MetJ, RegulonDB: STMS1H000287" /bound_moiety="MetJ" regulatory 4400848..4400853 /regulatory_class="ribosome_binding_site" /gene="metA" /locus_tag="STM4182" /note="putative RBS for metA; RegulonDB:STMS1H004092" CDS 4400854..4401783 /gene="metA" /locus_tag="STM4182" /EC_number="2.3.1.46" /note="homoserine O-succinyltransferase. (SW:META_SALTY)" /codon_start=1 /transl_table=11 /product="homoserine transsuccinylase" /protein_id="NP_463047.1" /db_xref="GeneID:1255708" /translation="MPIRVLDELPAVNFLREENVFVMTTSRASGQEIRPLKVLILNLM PKKIETENQFLRLLSNSPLQVDIQLLRIDARESRNTPAEHLNNFYCNFDDICDQNFDG LIVTGAPLGLVEFNDVAYWPQIRQVLEWAKDHVTSTLFVCWAVQAALNILYGIPKQTR TDKLSGVYEHHILHPHALLTRGFDDSFLAPHSRYADFPAALIRDYTDLEILAETEEGD AYLFASKDKRIAFVTGHPEYDAHTLAGEYFRDVEAGLNPEVPYNYFPKNDPQNIPRAT WRSHGNLLFTNWLNYYVYQITPYDLRHMNPTLD" misc_feature 4400854..4401759 /gene="metA" /locus_tag="STM4182" /note="homoserine O-succinyltransferase; Provisional; Region: PRK05368" /db_xref="CDD:235433" misc_feature 4400992..4400994 /gene="metA" /locus_tag="STM4182" /note="proposed active site lysine [active]" /db_xref="CDD:153225" misc_feature 4401277..4401279 /gene="metA" /locus_tag="STM4182" /note="conserved cys residue [active]" /db_xref="CDD:153225" gene 4401864..4403653 /gene="aceB" /locus_tag="STM4183" /db_xref="GeneID:1255709" regulatory 4401864..4401872 /regulatory_class="minus_35_signal" /gene="aceB" /locus_tag="STM4183" /note="putative -35_signal for aceB; RegulonDB:STMLTH004654" regulatory 4401888..4401896 /regulatory_class="minus_10_signal" /gene="aceB" /locus_tag="STM4183" /note="putative -10_signal for aceB; RegulonDB:STMLTH004654" protein_bind 4401921..4401955 /gene="aceB" /locus_tag="STM4183" /note="putative binding site for IclR, RegulonDB: STMS1H000235" /bound_moiety="IclR" regulatory 4402039..4402044 /regulatory_class="ribosome_binding_site" /gene="aceB" /locus_tag="STM4183" /note="putative RBS for aceB; RegulonDB:STMS1H004093" CDS 4402052..4403653 /gene="aceB" /locus_tag="STM4183" /EC_number="2.3.3.9" /note="similar to E. coli malate synthase A (AAC76984.1); Blastp hit to AAC76984.1 (533 aa), 90% identity in aa 1 - 533" /codon_start=1 /transl_table=11 /product="malate synthase A" /protein_id="NP_463048.1" /db_xref="GeneID:1255709" /translation="MNPQATTTDELTFTRPQGELEKQVLTAEAVEFLTELVTRFTPKR NKLLAARIQQQQDIDNGKLPDFISETTSIRESNWQIRGIPADLQDRRVEITGPVERKM VINALNANVKVFMADFEDSLAPDWNKVIDGQINLRDAVNGTISYTNEAGKIYQLKPDP AVLICRVRGLHLPEKHVTWRGEAIPGSLFDFALYFFHNYKALLAKGSGPYFYLPKTQA WQEAAWWSEVFSYAEDRFNLPRGTIKATLLIETLPAVFQMDEILHALRDHIVGLNCGR WDYIFSYIKTLKNHPDRVLPDRQVVTMDKPFLSAYSRLLIKTCHKRGAFAMGGMAAFI PSKDVERNNQVLAKVKADKALEANNGHDGTWIAHPGLADTAMAVFNEVLGEHKNQLFI TRDEDAPITAEQLLEPCEGERTEAGMRANIRVAVQYIEAWISGNGCVPIYGLMEDAAT AEISRTSIWQWIHHEKTLSNGKPVTKTLFREMLAEEMRVIQDELGEHRYSSGRFDDAA RLMEQITTSDDLIDFLTLPGYRLLA" misc_feature 4402061..4403650 /gene="aceB" /locus_tag="STM4183" /note="Malate synthase [Energy production and conversion]; Region: AceB; COG2225" /db_xref="CDD:441827" gene 4403670..4404989 /gene="aceA" /locus_tag="STM4184" /db_xref="GeneID:1255710" regulatory 4403670..4403675 /regulatory_class="ribosome_binding_site" /gene="aceA" /locus_tag="STM4184" /note="putative RBS for aceA; RegulonDB:STMS1H004094" CDS 4403685..4404989 /gene="aceA" /locus_tag="STM4184" /EC_number="4.1.3.1" /note="isocitrate lyase. (SW:ACEA_SALTY)" /codon_start=1 /transl_table=11 /product="isocitrate lyase" /protein_id="NP_463049.1" /db_xref="GeneID:1255710" /translation="MKTRTQQIEELQKEWTQPRWEGITRPYSAEEVVKLRGSVNPECT LAQLGAAKMWRLLHGEAKKGYINSLGALTGGQALQQAKAGIEAIYLSGWQVAADANLA SSMYPDQSLYPANSVPAVVDRINNTFRRADQIQWASGIEPNDPRYVDYFLPIVADAEA GFGGVLNAFELMKSMIEAGAAAVHFEDQLASVKKCGHMGGKVLVPTQEAIQKLVAARL AADVMGVPTLVIARTDADAADLITSDCDPYDSGFITGERTSEGFYRTHAGIEQAISRG LAYAPYADLVWCETSTPDLELARRFADAIHAKYPGKLLAYNCSPSFNWQKNLDDKTIA SFQQQLSDMGYKYQFITLAGIHSMWFNMFDLAHAYAQGEGMKHYVEKVQQPEFAAAKD GYTFVSHQQEVGTGYFDKVTTIIQGGASSVTALTGSTEEAQF" misc_feature 4403685..4404986 /gene="aceA" /locus_tag="STM4184" /note="isocitrate lyase; Provisional; Region: PRK15063" /db_xref="CDD:237893" gene 4405080..4406842 /gene="aceK" /locus_tag="STM4185" /db_xref="GeneID:1255711" regulatory 4405080..4405085 /regulatory_class="ribosome_binding_site" /gene="aceK" /locus_tag="STM4185" /note="putative RBS for aceK; RegulonDB:STMS1H004095" CDS 4405091..4406842 /gene="aceK" /locus_tag="STM4185" /EC_number="2.7.11.5" /EC_number="3.1.3.-" /note="contains ATPase activity; isocitrate dehydrogenase kinase/phosphatase (LDH kinase/phosphatase). (SW:ACEK_SALTY)" /codon_start=1 /transl_table=11 /product="isocitrate dehydrogenase kinase/phosphatase" /protein_id="NP_463050.1" /db_xref="GeneID:1255711" /translation="MPRGLELLIAQTILQGFDAQYGRFLEVTSGAQQRFEQADWHAVQ QAMKSRIHLYDHHVGLVVEQLRCITDGKSTDADFLLRVKEHYTRLLPDYPRFEIAESF FNSVYCRLFDHRSLTPERLFIFSSQPERRFRTIPRPLAKDFFPDHGWEPLLMRILSDL PLRLPWQNKSRDIRYIIAHLTETLGEDALPRCHVQVANELFYRNKAAWLVGKLTTPDG TLPFLLPIHRTDEGELFVDTCLTTTAEASIVFGFARSYFMVYAPLPAALVEWLREILP GKTTAELYMAIGCQKHAKTESYREYLCYLAESDEKFIEAPGIRGMVMLVFTLPGFDRV FKIIKDKFAPQKEMSAAHVRACYQLVKEHDRVGRMADTQEFENFVLDKRQIDPALMAL LRQEAPEKITDLGEHIVIRHLYIERRMVPLNIWLEQVEGQQLRDAIEEYGNAIRQLAA ANIFPGDMLFKNFGVTRHGRVVFYDYDEICYMTEVNFRDIPPARYPEDELASEPWYSV SPGDVFPEEFRHWLCADPRIGPLFEEMHADLFRADYWRALQTRIKEGHVEDVYAYRRR QRFSVRYGAISSTANSS" misc_feature 4405091..4406812 /gene="aceK" /locus_tag="STM4185" /note="bifunctional isocitrate dehydrogenase kinase/phosphatase protein; Validated; Region: aceK; PRK02946" /db_xref="CDD:235089" gene complement(4406806..4407217) /locus_tag="STM4186" /db_xref="GeneID:1255712" CDS complement(4406806..4407213) /locus_tag="STM4186" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463051.1" /db_xref="GeneID:1255712" /translation="MKLYWQEKYPQAFCWSFGDSPALADELAALVVAGKKRGTCSSLV SYQKEQPPVTPGSYHIVLNGTGDAVCVIRTLALRLIRFNEMSADLAALEGEGDLSLAY WQAAHRAFFEREGNWSPEMELVYEEFAVLEIAP" misc_feature complement(4406818..4407180) /locus_tag="STM4186" /note="ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to...; Region: ASCH_Ef3133_like; cd06553" /db_xref="CDD:119345" regulatory complement(4407212..4407217) /regulatory_class="ribosome_binding_site" /locus_tag="STM4186" /note="putative RBS for STM4186; RegulonDB:STMS1H004096" gene complement(4407224..4408060) /gene="iclR" /locus_tag="STM4187" /db_xref="GeneID:1255713" CDS complement(4407224..4408048) /gene="iclR" /locus_tag="STM4187" /note="IclR family; acetate operon repressor. (SW:ICLR_SALTY)" /codon_start=1 /transl_table=11 /product="acetate operon transcriptional repressor" /protein_id="NP_463052.1" /db_xref="GeneID:1255713" /translation="MVAPVPAKRGRKPAATTAPVTGQVQSLTRGLKLLEWIAESNGSV ALTELAQQAGLPNSTTHRLLTTMQQQGFVRQVGELGHWAVGAHAFIVGSSFLQSRNLL AIVHPILRKLMEDSGETVNLAVLDQSDHQAIIIDQVQCTQLMRMSAPIGGKLPMHASG AGKAFLSQLSEEQVTSLLHRKGLHAYTHATLVSPLHLKDDLAQTRKRGYSFDDEEHAL GLRCVASCIYDEHREPFAALSISGPCSRITDDRVTELGAMVIKAAKEVTLAYGGTR" misc_feature complement(4407227..4408048) /gene="iclR" /locus_tag="STM4187" /note="glyoxylate bypass operon transcriptional repressor IclR; Region: PRK11569" /db_xref="CDD:183206" regulatory complement(4408055..4408060) /regulatory_class="ribosome_binding_site" /gene="iclR" /locus_tag="STM4187" /note="putative RBS for iclR; RegulonDB:STMS1H004097" gene 4408069..4412035 /gene="metH" /locus_tag="STM4188" /db_xref="GeneID:1255714" regulatory 4408069..4408077 /regulatory_class="minus_35_signal" /gene="metH" /locus_tag="STM4188" /note="putative -35_signal for metH; RegulonDB:STMLTH004655" regulatory 4408096..4408104 /regulatory_class="minus_10_signal" /gene="metH" /locus_tag="STM4188" /note="putative -10_signal for metH; RegulonDB:STMLTH004655" regulatory 4408247..4408252 /regulatory_class="ribosome_binding_site" /gene="metH" /locus_tag="STM4188" /note="putative RBS for metH; RegulonDB:STMS1H004098" CDS 4408265..4412035 /gene="metH" /locus_tag="STM4188" /EC_number="2.1.1.13" /note="repressor of metE and metF; 5-methyltetrahydrofolate--homocysteine methyltransferase. (SW:METH_SALTY)" /codon_start=1 /transl_table=11 /product="B12-dependent homocysteine-N5-methyltetrahydrofolate transmethylase" /protein_id="NP_463053.3" /db_xref="GeneID:1255714" /translation="MSHVARCSLFRQHALCQYGSLRGALSGASVSSKVEQLRAQLNER ILVLDGGMGTMIQSYRLHEEDFRGERFADWPCDLKGNNDLLVLSKPEVIAAIHNAYFE AGADIIETNTFNSTTIAMADYRMESLSAEINYAAAKLARACADEWTARTPEKPRFVAG VLGPTNRTASISPDVNDPAFRNITFDQLVAAYRESTKALVEGGADLILIETVFDTLNA KAAVFAVKEEFEALGVDLPIMISGTITDASGRTLSGQTTEAFYNSLRHAEALTFGLNC ALGPDELRQYVQELSRIAECYVTAHPNAGLPNAFGEYDLDADTMAKQIREWAEAGFLN IVGGCCGTTPEHIAAMSRAVAGLLPRQLPDIPVACRLSGLEPLNIGDDSLFVNVGERT NVTGSAKFKRLIKEEKYSEALDVARQQVESGAQIIDINMDEGMLDAEAAMVRFLSLIA GEPDIARVPIMIDSSKWEVIEKGLKCIQGKGIVNSISMKEGVEAFIHHAKLLRRYGAA VVVMAFDEQGQADTRARKIEICRRAYKILTEEVGFPPEDIIFDPNIFAVATGIEEHNN YAQDFIGACEDIKRELPHALISGGVSNVSFSFRGNDPVREAIHAVFLYYAIRNGMDMG IVNAGQLAIYDDLPAELRDAVEDVILNRRDDGTERLLDLAEKYRGSKTDEAANAQQAE WRSWDVKKRLEYSLVKGITEFIEQDTEEARQQAARPIEVIEGPLMDGMNVVGDLFGEG KMFLPQVVKSARVMKQAVAYLEPFIEASKEKGSSNGKMVIATVKGDVHDIGKNIVGVV LQCNNYEIVDLGVMVPAEKILRTAREVNADLIGLSGLITPSLDEMVNVAKEMERQGFT IPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNASRTVGVVAALLSDTQRDDFVARTRK EYETVRIQHARKKPRTPPVTLEAARDNDLAFDWERYTPPVAHRLGVQEVEASIETLRN YIDWTPFFMTWSLAGKYPRILEDEVVGVEAQRLFKDANDMLDKLSAEKLLNPRGVVGL FPANRVGDDIEIYRDETRTHVLTVSHHLRQQTEKVGFANYCLADFVAPKLSGKADYIG AFAVTGGLEEDALADAFEAQHDDYNKIMVKAIADRLAEAFAEYLHERVRKVYWGYAPN ESLSNDELIRENYQGIRPAPGYPACPEHTEKGTIWQLLDVEKHTGMKLTESFAMWPGA SVSGWYFSHPESKYFAVAQIQRDQVTDYAFRKGMSVEDVERWLAPNLGYDAD" misc_feature 4408346..4412020 /gene="metH" /locus_tag="STM4188" /note="B12-dependent methionine synthase; Provisional; Region: metH; PRK09490" /db_xref="CDD:236539" gene 4412285..4413933 /gene="yjbB" /locus_tag="STM4189" /db_xref="GeneID:1255715" regulatory 4412285..4412290 /regulatory_class="ribosome_binding_site" /gene="yjbB" /locus_tag="STM4189" /note="putative RBS for yjbB; RegulonDB:STMS1H004099" CDS 4412302..4413933 /gene="yjbB" /locus_tag="STM4189" /note="hypothetical protein in metH-pepE intergenic region. (SW:YJBB_SALTY)" /codon_start=1 /transl_table=11 /product="putative PNaS family transport protein" /protein_id="NP_463054.1" /db_xref="GeneID:1255715" /translation="MLTLLHLLSAVALLVWGTHIVRTGVMRVFGARLRTVLSRSVEKK PLAFCAGIGVTALVQSSNATTLLVTSFVAQDLVALTPALVIVLGADVGTALMARILTF DLSWLSPLLIFIGVIFFLGRKQSRAGQLGRVGIGLGLILLALELIVQAVTPITQANGV QVIFASLTGDIMLDALIGAMFAIISYSSLAAVLLTATLTAAGIISFPVALCLVIGANL GSGLLAMLNNSAANAAARRVALGSLLFKLIGSLVILPFVHPLANLMDELSLPKSELVI YFHVFYNLVRCLAMVPFAELMARFCKRIIRDEPELDTHLKPKHLDVSALDTPTLALAN AAREVLRIGDAMEQMMEGLKKVMHGEPREEKALRKLADDVNVLYTAIKLYLARMPKDE LAAEESRRWAEIIEMALNLEQASDIIERMGSEIADKSLAARRAFSEEGLKELDALYDQ LLSNLQLAMSVFFSGDVTSARRLRRSKHRFRILNRRYSHAHVDRLHQQNVQSIETSSL HLGLLGDMKRLNSLFCSVAYSVLEQPDQDEERGEY" misc_feature 4412302..4413900 /gene="yjbB" /locus_tag="STM4189" /note="Na+/phosphate symporter [Inorganic ion transport and metabolism]; Region: NptA; COG1283" /db_xref="CDD:440894" gene complement(4414009..4414712) /gene="pepE" /locus_tag="STM4190" /db_xref="GeneID:1255716" CDS complement(4414009..4414698) /gene="pepE" /locus_tag="STM4190" /EC_number="3.4.-.-" /note="peptidase E. (SW:PEPE_SALTY)" /codon_start=1 /transl_table=11 /product="(alpha)-aspartyl dipeptidase" /protein_id="NP_463055.1" /db_xref="GeneID:1255716" /translation="MELLLLSNSTLPGKAWLEHALPLIANQLNGRRSAVFIPFAGVTQ TWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIEKAEIIIVGGGNTFQLLKESRERGL LAPMADRVKRGALYIGWSAGANLACPTIRTTNDMPIVDPNGFDALDLFPLQINPHFTN ALPEGHKGETREQRIRELLVVAPELTVIGLPEGNWIQVSNGQAVLGGPNTTWVFKAGE EAVALEAGHRF" misc_feature complement(4414012..4414698) /gene="pepE" /locus_tag="STM4190" /note="dipeptidase PepE; Region: PRK05282" /db_xref="CDD:179990" misc_feature complement(order(4414123..4414125,4414186..4414188, 4414228..4414230,4414294..4414296,4414339..4414341, 4414435..4414437)) /gene="pepE" /locus_tag="STM4190" /note="active site pocket [active]" /db_xref="CDD:153240" misc_feature complement(order(4414336..4414338,4414435..4414437)) /gene="pepE" /locus_tag="STM4190" /note="oxyanion hole [active]" /db_xref="CDD:153240" misc_feature complement(order(4414123..4414125,4414228..4414230, 4414339..4414341)) /gene="pepE" /locus_tag="STM4190" /note="catalytic triad [active]" /db_xref="CDD:153240" misc_feature complement(4414339..4414341) /gene="pepE" /locus_tag="STM4190" /note="active site nucleophile [active]" /db_xref="CDD:153240" regulatory complement(4414707..4414712) /regulatory_class="ribosome_binding_site" /gene="pepE" /locus_tag="STM4190" /note="putative RBS for pepE; RegulonDB:STMS1H004100" gene 4414770..4414871 /locus_tag="STM4191" /db_xref="GeneID:1255717" CDS 4414770..4414871 /locus_tag="STM4191" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463056.1" /db_xref="GeneID:1255717" /translation="MAHDVTRVTGKARSLKVTTGQICHLVSPEKLQV" gene 4414899..4415445 /locus_tag="STM4192" /db_xref="GeneID:1255718" regulatory 4414899..4414904 /regulatory_class="ribosome_binding_site" /locus_tag="STM4192" /note="putative RBS for STM4192; RegulonDB:STMS1H004101" CDS 4414906..4415445 /locus_tag="STM4192" /note="similar to E. coli nucleoprotein/polynucleotide-associated enzyme (AAC73457.1); Blastp hit to AAC73457.1 (218 aa), 86% identity in aa 40 - 218" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463057.1" /db_xref="GeneID:1255718" /translation="MAKLTLQEQLLQAGLVTSKKMAKVQRTAKKSRVQAREAREAVEE NKKAQLERDKQLSEQQKQAVLAKEFKAQVKQLIEMNRINVSKGDIGFNFTDNNVIKKI DVDKLTQTQLINGRLAIARLVINNSGECEYAIIPASVADKIAQRDADSIVVNSALSQE EQDEDDPYADFKVPDDLMW" misc_feature 4414912..4415442 /locus_tag="STM4192" /note="Uncharacterized conserved protein YaiL, DUF2058 family [Function unknown]; Region: YaiL; COG3122" /db_xref="CDD:442356" gene 4415480..4416361 /gene="yjbC" /locus_tag="STM4193" /db_xref="GeneID:1255719" regulatory 4415480..4415485 /regulatory_class="ribosome_binding_site" /gene="yjbC" /locus_tag="STM4193" /note="putative RBS for yjbC; RegulonDB:STMS1H004102" CDS 4415492..4416361 /gene="yjbC" /locus_tag="STM4193" /note="similar to E. coli orf, hypothetical protein (AAC76992.1); Blastp hit to AAC76992.1 (290 aa), 90% identity in aa 1 - 290" /codon_start=1 /transl_table=11 /product="putative pseudouridine synthase" /protein_id="NP_463058.1" /db_xref="GeneID:1255719" /translation="MLTDTSTRLNKYISESGICSRREADRFIEQGNVFINGKRAAIGD QVVAGDIVKVNGRLIEPREADDLVLIALNKPVGIVSTTEDGERDNIVDFVNHSKRIFP IGRLDKDSQGLIFLTNHGDLVNKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPIL GTVTKKCKVKKEAPFVFRITLVQGLNRQIRRMCEYFGYEVTKLERTRIMNVSLSGIPL GEWRDLTDDELIDLFKLIERSSSEAKPKAKAKPKTTGIKRPVVAIEKSNEKARPTSSG KRFTSPGRKKKGR" misc_feature 4415492..4416358 /gene="yjbC" /locus_tag="STM4193" /note="23S rRNA pseudouridine(2604) synthase RluF; Region: PRK10475" /db_xref="CDD:236698" gene complement(4416358..4416642) /gene="yjbD" /locus_tag="STM4194" /db_xref="GeneID:1255720" CDS complement(4416358..4416630) /gene="yjbD" /locus_tag="STM4194" /note="similar to E. coli orf, hypothetical protein (AAC76993.1); Blastp hit to AAC76993.1 (90 aa), 92% identity in aa 1 - 90" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463059.1" /db_xref="GeneID:1255720" /translation="MALPRITQKEMTEREQRELKTLLDRARIAHGRPLTNSETNSVKK EYIDKLMALREAEAKKARQLKKKQAYKPDTEASFSWSANTPTRGRR" misc_feature complement(4416361..4416630) /gene="yjbD" /locus_tag="STM4194" /note="hypothetical protein; Provisional; Region: PRK10515" /db_xref="CDD:170492" regulatory complement(4416637..4416642) /regulatory_class="ribosome_binding_site" /gene="yjbD" /locus_tag="STM4194" /note="putative RBS for yjbD; RegulonDB:STMS1H004103" gene complement(4416728..4417676) /locus_tag="STM4195" /db_xref="GeneID:1255721" CDS complement(4416728..4417669) /locus_tag="STM4195" /codon_start=1 /transl_table=11 /product="putative Na+-dependent transporter" /protein_id="NP_463060.1" /db_xref="GeneID:1255721" /translation="MLAVITRLFPLWALLLSLTAYYTPSTFTPVGPWVATLLMLIMFG MGVHLNVDDFKRVLSRPAPVAAGIFLHYLVMPLAAWLLALLFKMPPDLSAGMVLVGSV ASGTASNVMIYLAKGDVALSVTISSVSTLVGVVATPLLTRLYVDAHIQVDVMGMLLSI LQIVVIPITLGLVIHHLFPRVVKVVKPYLPAFSMVCILAIISAVVAGSASHIASVGFM VIIAVILHNTLGLLGGYWGGRLFGFDESTCRTLAIEVGMQNSGLAAALGKIYFGPLAA LPGALFSVWHNLSGSLLAGYWSGKPIVEKSGETAKVN" misc_feature complement(4416767..4417651) /locus_tag="STM4195" /note="Predicted Na+-dependent transporter YfeH [General function prediction only]; Region: YfeH; COG0385" /db_xref="CDD:440154" regulatory complement(4417671..4417676) /regulatory_class="ribosome_binding_site" /locus_tag="STM4195" /note="putative RBS for STM4195; RegulonDB:STMS1H004104" gene complement(4417931..4418664) /locus_tag="STM4196" /db_xref="GeneID:1255722" CDS complement(4417931..4418659) /locus_tag="STM4196" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463061.1" /db_xref="GeneID:1255722" /translation="MIIVSVLRQSKDFTTKHAQWLHKQLKGYDSVCLTDALKIKGVNT APLLYDWPGWWAKLELFNPLHPVLGNEDILYIDIDSVIVGDITPLTTMKKITLLNDFS QHGASVAPATGIMFIPAPAKKNVWDEFMKNPEKEINAIRTPPYHGDQGFIGRICQDAE RWQNILPGRIISYKANIATPKMIGFNPELYDGTGNGKLPDGASIVCFHGSPRPWNTAL PWVPYFSLKNTIQSKVKQYKLSLR" regulatory complement(4418659..4418664) /regulatory_class="ribosome_binding_site" /locus_tag="STM4196" /note="putative RBS for STM4196; RegulonDB:STMS1H004105" gene complement(4418856..4419153) /locus_tag="STM4197" /db_xref="GeneID:1255723" CDS complement(4418856..4419146) /locus_tag="STM4197" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463062.1" /db_xref="GeneID:1255723" /translation="MDYGNTGDMRLFAVMNFYYIDYLCRPITIAVVIFLFWWRLANEM YIYGSKKQKKTGLWINRKLNSKFGIDIELGAVKRGNKITPIPTLILYIPMKI" regulatory complement(4419148..4419153) /regulatory_class="ribosome_binding_site" /locus_tag="STM4197" /note="putative RBS for STM4197; RegulonDB:STMS1H004106" gene complement(4419395..4419856) /locus_tag="STM4198" /db_xref="GeneID:1255724" CDS complement(4419395..4419850) /locus_tag="STM4198" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463063.1" /db_xref="GeneID:1255724" /translation="MSQTTVWLACYKGRSEHRGIARFADWLTRKVTRGIYSHCELAVA HGGNEYLCYSASFRDRGVRGKIIPLPDDKWDKLPLKATLPEVEVFFRKHNGKRYDWQG ALGIALYNRERKDRLFCSEFCAEFLGLNDSWRYSPSHLYALVSSWQYDC" gene complement(4419847..4420457) /locus_tag="STM4199" /db_xref="GeneID:1255725" CDS complement(4419847..4420452) /locus_tag="STM4199" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463064.1" /db_xref="GeneID:1255725" /translation="MTQYAYYHPATFEVIDWIDTSSLNVVLPDSVISIDDEQWRLRDK NCWVCLNPLEFITTPPPGKFYRLQGNEWVYDEALFVSALESVKAQVIQAIKAHRDDVT ADYIVIDGNHFHSDANSRIQQMSLTRMGQAQQIPAGLMWQAKNNGLIELTNDIAAQFE TVTMDHDMRLFANAQRHIAAVEALEDIEAVLDYDYSTGWQP" misc_feature complement(4419877..4420179) /locus_tag="STM4199" /note="Domain of unknown function (DUF4376); Region: DUF4376; pfam14301" /db_xref="CDD:433852" regulatory complement(4419851..4419856) /regulatory_class="ribosome_binding_site" /locus_tag="STM4198" /note="putative RBS for STM4198; RegulonDB:STMS1H004107" regulatory complement(4420452..4420457) /regulatory_class="ribosome_binding_site" /locus_tag="STM4199" /note="putative RBS for STM4199; RegulonDB:STMS1H004108" gene complement(4420457..4422209) /locus_tag="STM4200" /db_xref="GeneID:1255726" CDS complement(4420457..4422202) /locus_tag="STM4200" /note="similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 31% identity in aa 312 - 498, 33% identity in aa 426 - 547, 22% identity in aa 233 - 444, 30% identity in aa 132 - 266, 23-1073758628dentity in aa 170 - 398, 21% identity in aa 178 - 417, 24-1073758654dentity in aa 111 - 354, 23% identity in aa 950 - 1104, 20% identity in aa 1015 - 1106" /codon_start=1 /transl_table=11 /product="putative phage tail fiber protein H" /protein_id="NP_463065.1" /db_xref="GeneID:1255726" /translation="MDNEFYTLLTDRGMAKIASALADKKQLHLQKMAVGDGGGQYYEP IASQTKLRHEVWRGEMNTLTVAPNNPNWLIAELVLPEDVGGWYVREVGVFDDEGELIA IGKFPESYKPLLPGGCGKQVCIRLIMEVSNTTAVTLTVDPSIVLATRDYVDTRLDEHE HSTNHPDATLTQKGFTQLSNATDSDDETKAATPKAVKAAMAEARNHTHTWNQITGVPD GTLTQKGIVKLNSATDSTSTTEAATPSAVKAAMDKANAAAPANHTHVWNQVTGVPDGT LAQKGIVKLNNATDSTSTTEAATPSAVKAAMDKASAAAPARHTHAWGQITGAPDGTLT QKGIVKLNNATDSTSTTEAATPSAVKAAYDKASAAAPANHSHYQFFTANGTFTVPDGV TQVFVEMLGGGGGGGGGGHTSNTDGLLYCSGGNAGKSGEPEIAIVPVIAGNNYPVTVG AGGASGAGGVLPNSNPTGNVVQVGQAGNSGINGGNSIFIDVVANGGAGGAGGIVQSRI PLSGFNQLDSISGGNAETTFFGKGGTGAVLSNGSNASGYGAGGGGGASVNSLNIALSG YAGGRGSSGFVKISW" misc_feature complement(4421471..4422202) /locus_tag="STM4200" /note="Phage-related tail fiber protein [Mobilome: prophages, transposons]; Region: COG5301" /db_xref="CDD:444101" misc_feature complement(<4421291..4421377) /locus_tag="STM4200" /note="Phage tail fibre repeat; Region: Phage_fiber_2; pfam03406" /db_xref="CDD:427282" misc_feature complement(<4421123..4421209) /locus_tag="STM4200" /note="Phage tail fibre repeat; Region: Phage_fiber_2; pfam03406" /db_xref="CDD:427282" regulatory complement(4422204..4422209) /regulatory_class="ribosome_binding_site" /locus_tag="STM4200" /note="putative RBS for STM4200; RegulonDB:STMS1H004109" gene complement(4422205..4422844) /locus_tag="STM4201" /db_xref="GeneID:1255727" CDS complement(4422205..4422837) /locus_tag="STM4201" /codon_start=1 /transl_table=11 /product="putative phage tail protein" /protein_id="NP_463066.1" /db_xref="GeneID:1255727" /translation="MDKLLLPPPLASDERFSILANIAAERFAQIDLTALLVYLVDIVD ASALPSLAEQFHVQGLEGWLFAANEQEKRELIKQAIELHKYKGTPWAVRRVLEILSLP GTISEWFEYGGKAYFFKVEIKLINQGMDENLFNNLVDLIHEYKNVRSKLEALIVWIIN QSAIPVIGSALYGGEITTVLPFQVLEVQQTKPIYFGTGQWSLEITSIYPE" misc_feature complement(4422370..4422825) /locus_tag="STM4201" /note="Bacteriophage P2-related tail formation protein [Mobilome: prophages, transposons]; Region: gpI; COG4385" /db_xref="CDD:443511" gene complement(4422830..4423952) /locus_tag="STM4202" /db_xref="GeneID:1255728" CDS complement(4422830..4423945) /locus_tag="STM4202" /codon_start=1 /transl_table=11 /product="putative phage baseplate protein" /protein_id="NP_463067.1" /db_xref="GeneID:1255728" /translation="MAIAEPDFIDRDPAQITSEMIAQYEEASGKKLYPAQAERLLIDL FAYRENLVRIAIQEAAKQNLVAYSRAPMLDYLGELVGVHRLPAQAAKTTLQFSVTQAA KSNLVIPQGTRASASDSVMFATDEDVLLPAGSLSVAVTATCVVTGEPGNNWQPAQISA LVDRVGNYDISVTNLTASSGGCGEENDDALRKRIQLAPESFSNAGSYGAYRFHTLSVS QSIIDVAVLGPDEGLAEGCVELYPLTLNGLPGPELLAQIEREVSKEKKRPLTDKVSAK CSPRVAYQISARLTLFTTADQETTLAAAREAINTWTRSRQTRLGQDIVPNQIIKVLQV DGVYDVALDMPAKKVLQAHEWAECTAIDVTIAGVSDG" misc_feature complement(4422836..4423945) /locus_tag="STM4202" /note="Phage-related baseplate assembly protein [Mobilome: prophages, transposons]; Region: COG3948" /db_xref="CDD:443148" regulatory complement(4422839..4422844) /regulatory_class="ribosome_binding_site" /locus_tag="STM4201" /note="putative RBS for STM4201; RegulonDB:STMS1H004110" gene complement(4423936..4424301) /locus_tag="STM4203" /db_xref="GeneID:1255729" CDS complement(4423936..4424295) /locus_tag="STM4203" /codon_start=1 /transl_table=11 /product="putative phage baseplate protein" /protein_id="NP_463068.1" /db_xref="GeneID:1255729" /translation="MNTKTRPSTLHWQPALQRPEEYVCGLDDIHQAIHIILRTPRGSD PHRPLFGSNLWRYIDYPIERAIPHVVRESVEAIRMWEPRCRLLKVTPTIDGEHLTLRV QWRAADGVINSTEVLWR" misc_feature complement(4423981..4424235) /locus_tag="STM4203" /note="Phage baseplate assembly protein W [Mobilome: prophages, transposons]; Region: COG3628" /db_xref="CDD:442846" regulatory complement(4423947..4423952) /regulatory_class="ribosome_binding_site" /locus_tag="STM4203" /note="putative RBS for STM4202; RegulonDB:STMS1H004111" regulatory complement(4424296..4424301) /regulatory_class="ribosome_binding_site" /locus_tag="STM4203" /note="putative RBS for STM4203; RegulonDB:STMS1H004112" gene complement(4424459..4426012) /locus_tag="STM4204" /db_xref="GeneID:1255730" CDS complement(4424459..4426006) /locus_tag="STM4204" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463069.1" /db_xref="GeneID:1255730" /translation="MNTMLKILPKTAMILLAFLAIFLIEWYTPIHSDDYRYYLLGISP ESHFHHYMTWSGRIIADYTSALILYTRSQLVYSISAAVSTLVFCYFIVKTPSGTLRWN KSDYLLFPLIFFTYWISNPNLGQTTFWIVGAANYLWTNLFVVAWLFFFYTITIKNSKA ISPWVALLSFMAGCSNESVSPFVSLISVLAIAYELWQNKSVSRNKIVYSLCAIAGSCV LILSPGNFIRASGKEFWYGRPIFERIFIHLTERVHNHLALIWIAYVVLLLLVLLVIFN KQIRAKIDKTSLICAALVVCIGIGTSLIMFASPSYPDRVMNGTFMFFLLAISFIAYAL LKSGVKAGVVGVTAVTVLCGIVFLWSYSLMLNGYKKTAGQEIVRQKIITKEIAAGKQK FIIPDYYFVKLQNSGGHFGLFHDPAVYGEYYHVQAIFKKKVNFDYSVIANGAKHSLSN ETTAYSNTRGDFAIISREQLTGSITLSVNGRQKTIPVEKMKHAEINDEFWYYASVDKG EITAISF" misc_feature complement(4424723..4425973) /locus_tag="STM4204" /note="Family of unknown function (DUF6056); Region: DUF6056; pfam19528" /db_xref="CDD:437360" gene complement(4426006..4426943) /locus_tag="STM4205" /db_xref="GeneID:1255731" CDS complement(4426006..4426935) /locus_tag="STM4205" /note="similar to E. coli putative glycan biosynthesis enzyme (AAC75410.1); Blastp hit to AAC75410.1 (306 aa), 80% identity in aa 1 - 305" /codon_start=1 /transl_table=11 /product="putative phage glycosyltransferase" /protein_id="NP_463070.1" /db_xref="GeneID:1255731" /translation="MKISLVVPVFNEEDAIPIFYKTVREYSSLKPYNVEIIFVNDGSH DATESIISALAVADPLVVPISFTRNFGKEPALFAGLDHATGDVVIPIDVDLQDPIEVI PHLINKWQAGAEMVLAKRIDRSTDGHLKRKSAEWFYRLHNKISTPKIEENVGDFRLMS REIVENIKLLPERNLFMKGILSWVGGQTDVVEYARAERVAGNSKFNGWKLWNLALEGI TSFSTFPLRIWMYIGVSVSALSLIYAMWMIIDKLMWGNPVPGYPSLMTAILFLGGIQL IGIGIMGEYIGRVYTEVKQRPRYIVKNKKTMME" misc_feature complement(4426381..4426923) /locus_tag="STM4205" /note="Bacterial DPM1_like enzymes are related to eukaryotic DPM1; Region: DPM1_like_bac; cd04187" /db_xref="CDD:133030" misc_feature complement(order(4426654..4426656,4426906..4426908, 4426912..4426914)) /locus_tag="STM4205" /note="Ligand binding site [active]" /db_xref="CDD:133030" misc_feature complement(order(4426654..4426659,4426813..4426815)) /locus_tag="STM4205" /note="Putative Catalytic site [active]" /db_xref="CDD:133030" misc_feature complement(4426654..4426662) /locus_tag="STM4205" /note="DXD motif [active]" /db_xref="CDD:133030" regulatory complement(4426007..4426012) /regulatory_class="ribosome_binding_site" /locus_tag="STM4205" /note="putative RBS for STM4204; RegulonDB:STMS1H004113" gene complement(4426932..4427294) /locus_tag="STM4206" /db_xref="GeneID:1255732" CDS complement(4426932..4427294) /locus_tag="STM4206" /note="similar to E. coli orf, hypothetical protein (AAC75409.1); Blastp hit to AAC75409.1 (120 aa), 69% identity in aa 1 - 120" /codon_start=1 /transl_table=11 /product="putative phage glucose translocase" /protein_id="NP_463071.1" /db_xref="GeneID:1255732" /translation="MIKLFIKYVSIGVLNTALHWAIFALCVYGFQTSQALANVAGFAV AVSFSFFANARFTFGASVSTGRYLLYVGFMGVLSAVVGWTGDKCAMPPIFTLIVFSAI SLICGFLYSRFIVFRNEK" misc_feature complement(4426935..4427282) /locus_tag="STM4206" /note="Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose) [Lipid transport and metabolism]; Region: GtrA; COG2246" /db_xref="CDD:441847" regulatory complement(4426938..4426943) /regulatory_class="ribosome_binding_site" /locus_tag="STM4206" /note="putative RBS for STM4205; RegulonDB:STMS1H004114" gene complement(4427622..4428351) /locus_tag="STM4207" /db_xref="GeneID:1255733" CDS complement(4427622..4428344) /locus_tag="STM4207" /codon_start=1 /transl_table=11 /product="putative phage baseplate component" /protein_id="NP_463072.1" /db_xref="GeneID:1255733" /translation="MKGVTRQTGIISDIDEAVVRVRVTLPECDNLRSNWLAVLQRNTQ DNKDYWLPDIGEQVEVSLDDNGEDGVVLGAVYSSVDTAPLASRDKRYVQFSDGAAFEY DRALHQLTVNGGIEKIVIEVKEHTQLTSPQVEVRAQHVTVISETVDVAATSVGVKAVD VNVEAPHTGIKALNVTVDAPLSTFTGDVTVMKKLTWLGGMAGSGGVGNSAVITGNVNV LGNVNASGTLMDNGGNSNHHSH" misc_feature complement(4427625..4428344) /locus_tag="STM4207" /note="Phage P2 baseplate assembly protein gpV [Mobilome: prophages, transposons]; Region: gpV; COG4540" /db_xref="CDD:443606" regulatory complement(4428346..4428351) /regulatory_class="ribosome_binding_site" /locus_tag="STM4207" /note="putative RBS for STM4207; RegulonDB:STMS1H004115" gene complement(4428354..4429404) /locus_tag="STM4208" /db_xref="GeneID:1255734" CDS complement(4428354..4429397) /locus_tag="STM4208" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463073.1" /db_xref="GeneID:1255734" /translation="MAEITVSGGVFATLTPIFTLWYGHKEITYDIAPYVTSISYSDSI KNESDVIAIALEDSTGRWVNEWYPGKGDTLALRLGYQGEDLLDCGIYVIDKIDISAPP STVNIDGIATSVSKALRTKNSQGFEETTLSAIASRIAQKHGLTLAGKIAPLTIDRVTQ YAETDVAFLKRLASEYGYTVKVTATELIFSHLPTLRCLAPVKTLRRTDVSHYTFKDTI NRIYKNATVQHQNSKQKELVIYTHDSQEKTSARGAATSADTLKINSRAPDTGAAQAKA NAALDSHNEYQQTGTLSLMGCPQLTAGNKIELSDFGVLSGQWLIDKSMHKLTRSGGYT TEIDISRGPATSQ" misc_feature complement(4428363..4429364) /locus_tag="STM4208" /note="Phage protein D [Mobilome: prophages, transposons]; Region: gpD; COG3500" /db_xref="CDD:442723" gene complement(4429385..4429602) /locus_tag="STM4209" /db_xref="GeneID:1255735" CDS complement(4429385..4429594) /locus_tag="STM4209" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463074.1" /db_xref="GeneID:1255735" /translation="MRYLEHVTTDGERWDNLAWRYYGDALAYERIIAANPHVAIMPVL PSGVRLIIPVISVTQTTPELPPWLR" misc_feature complement(4429394..4429579) /locus_tag="STM4209" /note="P2-like prophage tail protein X [Mobilome: prophages, transposons]; Region: gpX; COG5004" /db_xref="CDD:444028" regulatory complement(4429399..4429404) /regulatory_class="ribosome_binding_site" /locus_tag="STM4209" /note="putative RBS for STM4208; RegulonDB:STMS1H004116" gene complement(4429594..4430552) /locus_tag="STM4210" /db_xref="GeneID:1255736" CDS complement(4429594..4430547) /locus_tag="STM4210" /codon_start=1 /transl_table=11 /product="putative methyl-accepting chemotaxis protein" /protein_id="NP_463075.1" /db_xref="GeneID:1255736" /translation="MYAVLGEIEFDVVAYWDEFESTMGVDYTSHARIEGKPGVQFIGD KLDKITLKFNFHSQYCQPTTELNRLREAMTAHQAMALVFGNGDYRGWFVITDLTATHQ HTDPYGNVIAQGGSLSLQEYTGDPKSPLLPPAITTQEPNIDEMLDELPDVNDSWFDEL LSVVEEGMREAKEMMDEVADAIDDIKKTIAQAKELVKEAKALKEKCGDIVDSLKKTMS SIDALFQQPLDLQTLAGLPKALAAKMQELIDSLPGIRECAGDAGTLIEHAESLFDAIT SSVAEATYDSAATLVNQARGTLQTSAPDVSQLAAADITRSL" misc_feature complement(4430164..4430529) /locus_tag="STM4210" /note="Phage protein U [Mobilome: prophages, transposons]; Region: COG3499" /db_xref="CDD:442722" misc_feature complement(4429780..>4430133) /locus_tag="STM4210" /note="chromosome segregation protein; Provisional; Region: PRK01156" /db_xref="CDD:100796" regulatory complement(4429597..4429602) /regulatory_class="ribosome_binding_site" /locus_tag="STM4209" /note="putative RBS for STM4209; RegulonDB:STMS1H004117" gene complement(4430547..4432901) /locus_tag="STM4211" /db_xref="GeneID:1255737" CDS complement(4430547..4432901) /locus_tag="STM4211" /codon_start=1 /transl_table=11 /product="putative phage tail protein" /protein_id="NP_463076.1" /db_xref="GeneID:1255737" /translation="MANDIITQLQARNETLTQAIARYGSLNASTLHTLSFEQTKVTRL TQQLANSALRREENDKQRAGLLEKTQTFAGQLGKLLNVETPDWKLPYEFQGNMVDMAA KGGMDNTARDALSLNIRDWSLDFNQDQKDLQSTAATMIEGGVSALQDLSRYMPDIAKA ATASRDSAQSWAQAALATRDKLNIAPDDFRFAQNMLYSVAKSGGGSVAEQTQWINAFA GKTGAQGKEGIAELTATMQIAMKNAPDAGAAAANFDHFLKSAFSKETDSWFARQGVDL QGSLLEHQQNGIGVTEAMTHIVQMQLEKMNPQILDTFRQTMKIEDLSARGDALQAMVE KFNLGAMFGDAQTRDFLAPMLANMDEYRQLKASAMQAAGQHVIDDDFAAKMTSPGEQT KALQLSLNDLWLTVGLELMPAIGELAQSITPLVRQFSAWLRENPALVQGVAKVVSVIW LFNGALNILRLGANLIASPFIRLIDIFLKVKAGLALGGGSRALSVLKSFGNGAKSLTM LLGNGLIKGLRLVGQTFIWLGRALLMNPVGLTITAIAGAAYLLYRYWEPISGFFAGVW ERIKTAFDGGIAGVTRLILDWSPLGLFYRAFAGVLDWFGIELPASFSEFGGNILDSLI NGILNALPFLSGAIEKIKALIPDWAKSALGISAEMPSVAAAVPGIAGTMVAQQASAPL ASGAKAVTTSAKTMASPQPVKTKSAATPPTPAALPGKSGGKPYTLPSRAQSNVQVHFS PQVTVQGSGANAAKDINNVLSLSKRELERMINDVMAQQRRREYA" misc_feature complement(4430757..4432883) /locus_tag="STM4211" /note="Phage-related tail protein [Mobilome: prophages, transposons]; Region: COG5283" /db_xref="CDD:444094" regulatory complement(4430547..4430552) /regulatory_class="ribosome_binding_site" /locus_tag="STM4210" /note="putative RBS for STM4210; RegulonDB:STMS1H004118" gene complement(4433455..4433986) /locus_tag="STM4212" /db_xref="GeneID:1255738" CDS complement(4433455..4433979) /locus_tag="STM4212" /codon_start=1 /transl_table=11 /product="putative phage tail core protein" /protein_id="NP_463077.1" /db_xref="GeneID:1255738" /translation="MAGKIQINRITNANIYLDGNNLLGRASEIKLPDISMIMQEHKAL GMVGKIELPAGFDKLEGEIKWNSFYHDVMRKTANPWQAVALQCRSSIDCYNSQGKADQ LALVTHMTVMFKKNPLGTFKQNENPEFSSAFGCTYIKQVVDGETLLELDYLANIFRVN GADQLNAYRNNIGG" misc_feature complement(4433458..4433967) /locus_tag="STM4212" /note="Phage tail tube protein FII; Region: Phage_tube; cl01390" /db_xref="CDD:445387" gene complement(4433979..4435413) /locus_tag="STM4213" /db_xref="GeneID:1255739" CDS complement(4433979..4435406) /locus_tag="STM4213" /codon_start=1 /transl_table=11 /product="putative phage tail sheath protein" /protein_id="NP_463078.1" /db_xref="GeneID:1255739" /translation="MAANYLHGVETIEIETGPRPVKAVKSAVIGLIGTAPCGPVNQPT LCLSESDAAQFGPGLANFTIPQALKAIYDHGAGTVVVINVLNPAVHKSTIPSETVKVD DNGQIQLKHGAVQTMNIGRSTNAGNAYIKGTDYTIDMLTGKITCMGTNLKPGVQAYVN YTYADPTKVTAADIVGAVNTAGDRTGMKLLQDTWNQFGFYAKILIAPVFCTQNSVAVK LIAQAEALGAITYIDAPIGTTFQQVLAGRGPQGAINFNTSSDRARLCYPHVKVYDSAT NSEVLEPLSSRAAGLRAKVDLEKGFWWSNSNQEIQGITGVERSLSAMIDDPQTEVNQL NENGITTIFNSYGSGLRLWGNRTAAWPTVTHMRNFENVRRTGDVINESIRYFSQQYMD MPINQALIDALTESVNTWGRKLIADGALLGFECWYDPARNEQTELAAGHLLLSYKFTP PPPLERLTFETEITSEYLVSLESNR" misc_feature complement(4433994..4435406) /locus_tag="STM4213" /note="Phage tail sheath protein subtilisin-like domain; Region: Phage_sheath_1; cl01389" /db_xref="CDD:470182" regulatory complement(4433981..4433986) /regulatory_class="ribosome_binding_site" /locus_tag="STM4212" /note="putative RBS for STM4212; RegulonDB:STMS1H004119" gene complement(4435396..4435600) /locus_tag="STM4214" /db_xref="GeneID:1255740" CDS complement(4435396..4435593) /locus_tag="STM4214" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463079.1" /db_xref="GeneID:1255740" /translation="MKYIYSGPASGVTLADGQEVLLWPNSEISLPEDNEWVITMIARR HLVPVVTQEVETNEEEIVHGS" regulatory complement(4435408..4435413) /regulatory_class="ribosome_binding_site" /locus_tag="STM4214" /note="putative RBS for STM4213; RegulonDB:STMS1H004120" gene complement(4435590..4436052) /locus_tag="STM4215" /db_xref="GeneID:1255741" CDS complement(4435590..4436045) /locus_tag="STM4215" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463080.1" /db_xref="GeneID:1255741" /translation="METLSVIHTVANRLRELNPDMDIHISSTDAKVYIPTGQQVTVLI HYCGSVFAEPENTDATVQKQLIRISATVIVPQISDAINALDRLRRSLGGIELPDCDRP LWLESEKYIGDAANFCRYALDMTASTLFIAEQESKDSPLLTIVNYEEIQ" misc_feature complement(4435602..4435994) /locus_tag="STM4215" /note="Gp37 protein; Region: Gp37; pfam09646" /db_xref="CDD:430731" regulatory complement(4435595..4435600) /regulatory_class="ribosome_binding_site" /locus_tag="STM4214" /note="putative RBS for STM4214; RegulonDB:STMS1H004121" regulatory complement(4436047..4436052) /regulatory_class="ribosome_binding_site" /locus_tag="STM4215" /note="putative RBS for STM4215; RegulonDB:STMS1H004122" gene complement(4436205..4436525) /locus_tag="STM4216" /db_xref="GeneID:1255742" CDS complement(4436205..4436519) /locus_tag="STM4216" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463081.1" /db_xref="GeneID:1255742" /translation="MKLSIDFWEVISLLLSFVGLMFAAGKLLLAQIEKRLNERFEALE AARRESEAGWSRLEREFLEFRADLPLHYVRREDYLRGQAVLEAKLDALYSKIELIQRG NH" regulatory complement(4436520..4436525) /regulatory_class="ribosome_binding_site" /locus_tag="STM4216" /note="putative RBS for STM4216; RegulonDB:STMS1H004123" gene complement(4436532..4437143) /locus_tag="STM4217" /db_xref="GeneID:1255743" CDS complement(4436532..4437137) /locus_tag="STM4217" /codon_start=1 /transl_table=11 /product="putative soluble lytic murein transglycosylase" /protein_id="NP_463082.1" /db_xref="GeneID:1255743" /translation="MRYQYVCLVCAMTFLSADAAEPPRASLQWRNEVIRTAREIWGLN APVADFAGQLHQESGWAPDALSPAGAQGMAQFMPATAKWVSQLYPELHENKPFNPAWA IRALVQYDRQLWKSVLAKNSCQRMAFTLSAYNGGQGWVNRDKKLAAAKGLDASIWFEH VERVNAGRSAANWRENRHYPKAILYQHAPRYLQWGRASCIH" misc_feature complement(4436565..>4437056) /locus_tag="STM4217" /note="Membrane-bound lytic murein transglycosylase MltF [Cell wall/membrane/envelope biogenesis, Signal transduction mechanisms]; Region: MltF; COG4623" /db_xref="CDD:443662" regulatory complement(4437138..4437143) /regulatory_class="ribosome_binding_site" /locus_tag="STM4217" /note="putative RBS for STM4217; RegulonDB:STMS1H004124" gene complement(4437140..4437435) /locus_tag="STM4218" /db_xref="GeneID:1255744" CDS complement(4437140..4437427) /locus_tag="STM4218" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463083.1" /db_xref="GeneID:1255744" /translation="MRKIIVPRLSGWLVASVVLFALIGWTSSAQIPVVIYKLSLVSLS AVLGYWLDRSLFPWARPDSFCPWEESLCCAAAMIRRAIIVAAICLAVALGL" misc_feature complement(4437143..4437403) /locus_tag="STM4218" /note="Putative 2/3 transmembrane domain holin; Region: Holin_2-3; pfam13272" /db_xref="CDD:433075" regulatory complement(4437430..4437435) /regulatory_class="ribosome_binding_site" /locus_tag="STM4218" /note="putative RBS for STM4218; RegulonDB:STMS1H004125" gene 4438143..4438350 /locus_tag="STM4219" /db_xref="GeneID:1255745" regulatory 4438143..4438148 /regulatory_class="ribosome_binding_site" /locus_tag="STM4219" /note="putative RBS for STM4219; RegulonDB:STMS1H004126" CDS 4438147..4438350 /locus_tag="STM4219" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463084.3" /db_xref="GeneID:1255745" /translation="MRNWGGQSIYFPKGISGRASERDYQIYSECDGRNYAELAKKYNL TLQWIYKIVKRVHTEKQHQRRML" misc_feature <4438147..4438344 /locus_tag="STM4219" /note="Mor transcription activator family; Region: Mor; cl02360" /db_xref="CDD:470549" gene complement(4438483..4439841) /gene="lysC" /locus_tag="STM4220" /db_xref="GeneID:1255746" CDS complement(4438483..4439832) /gene="lysC" /locus_tag="STM4220" /EC_number="2.7.2.4" /note="similar to E. coli aspartokinase III, lysine sensitive (AAC76994.1); Blastp hit to AAC76994.1 (449 aa), 93% identity in aa 1 - 449" /codon_start=1 /transl_table=11 /product="lysine sensitive aspartokinase III" /protein_id="NP_463085.1" /db_xref="GeneID:1255746" /translation="MTEIVVSKFGGTSVADFDAMNRSADIVLSDTNVRLVVLSASAGI TNLLVALAEGMEPGERFATLDAIRKIQFDILDRLRHPNVIREEIERLLENITILAEAA SLATSAALTDELVSHGELMSTLLFVEILRERDVQAHWFDVRKVMRTSDRFGRAEPDVA ALAELAAQQLLPRLSETLVITQGFIGSESKGRTTTLGRGGSDYTAALLAEALHAARVD IWTDVPGIYTTDPRVVPVAQRIDEIDFEEAAEMATFGAKVLHPATLLPAVRSDIPVFV GSSKDPQAGGTLVCNKTQNPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILAR HNISVDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALI GNNLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGDDAEKVVQKLHQNLFE" misc_feature complement(4438486..4439823) /gene="lysC" /locus_tag="STM4220" /note="aspartate kinase III; Validated; Region: PRK09084" /db_xref="CDD:236376" regulatory complement(4439836..4439841) /regulatory_class="ribosome_binding_site" /gene="lysC" /locus_tag="STM4220" /note="putative RBS for lysC; RegulonDB:STMS1H004127" gene 4440161..4441826 /gene="pgi" /locus_tag="STM4221" /db_xref="GeneID:1255747" regulatory 4440161..4440166 /regulatory_class="ribosome_binding_site" /gene="pgi" /locus_tag="STM4221" /note="putative RBS for pgi; RegulonDB:STMS1H004128" CDS 4440177..4441826 /gene="pgi" /locus_tag="STM4221" /EC_number="5.3.1.9" /note="similar to E. coli glucosephosphate isomerase (AAC76995.1); Blastp hit to AAC76995.1 (549 aa), 95% identity in aa 1 - 548" /codon_start=1 /transl_table=11 /product="glucosephosphate isomerase" /protein_id="NP_463086.1" /db_xref="GeneID:1255747" /translation="MKNINPTQTSAWQALQKHYDEMKDVTIAELFANDSDRFAKFSAT FDDLMLVDFSKNRITEETLAKLQDLAKETDLAGAIKSMFSGEKINRTEDRAVLHVALR NRSNTPIIVDGKDVMPEVNAVLEKMKTFSQAIISGQWKGYTGKAITDVVNIGIGGSDL GPFMVTEALRPYKNHLTMHFVSNVDGTHIAEVLKKVNPETTLFLVASKTFTTQETMTN AHSARDWFLKTAGDEKHVAKHFAALSTNAKAVGEFGIDTANMFEFWDWVGGRYSLWSA IGLSIILSVGFDNFVELLSGAHAMDKHFSTTPAEKNLPILLALIGIWYNNFFGAETEA ILPYDQYMHRFAAYFQQGNMESNGKYVDRNGNAVDYQTGPIIWGEPGTNGQHAFYQLI HQGTKMVPCDFIAPAITHNPLSDHHQKLLSNFFAQTEALAFGKSREVVEQEYRDQGKD PAQLEHVVPFKVFEGNRPTNSILLREITPFSLGALIALYEHKIFTQGVILNIFTFDQW GVELGKQLANRILPELGDDKAISSHDSSTNGLINRYKAWRA" misc_feature 4440180..4441823 /gene="pgi" /locus_tag="STM4221" /note="glucose-6-phosphate isomerase; Reviewed; Region: pgi; PRK00179" /db_xref="CDD:234679" gene 4442257..4442512 /gene="yjbE" /locus_tag="STM4222" /db_xref="GeneID:1255748" regulatory 4442257..4442262 /regulatory_class="ribosome_binding_site" /gene="yjbE" /locus_tag="STM4222" /note="putative RBS for yjbE; RegulonDB:STMS1H004129" CDS 4442267..4442512 /gene="yjbE" /locus_tag="STM4222" /note="similar to E. coli orf, hypothetical protein (AAC76996.1); Blastp hit to AAC76996.1 (80 aa), 96% identity in aa 1 - 80" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_463087.3" /db_xref="GeneID:1255748" /translation="MMKKVLYGIFAITALAATSVSAAPVQVGEAAGSAATSVSAGSSS ATSVSTVSSAVGVALAATGGGDGSNTGTTTTTTTSTQ" gene 4442546..4443214 /gene="yjbF" /locus_tag="STM4223" /db_xref="GeneID:1255749" CDS 4442546..4443214 /gene="yjbF" /locus_tag="STM4223" /note="similar to E. coli orf, hypothetical protein (AAC76997.1); Blastp hit to AAC76997.1 (222 aa), 86% identity in aa 1 - 221" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_463088.3" /db_xref="GeneID:1255749" /translation="MVILPLWRSVVKRLALILICLLLQACSATTKGLGDSLWDSLFGT PGVQLTDDDIQNMPYASQYMQLNGGPQLFVVLAFSENGQQKWVTQDGATIVTQHGRLV KTLLGGDNLIDVNNLATDPLAKPGQIIDGATWTRTLGWTEHRQVRYATARSVFTWRGT DRVNVGSEETAVRVLDEEVTTDQTRWRNRYWVDSEGQIRQTEQYLGANYFPVKTTLIK AAKS" misc_feature 4442645..4443193 /gene="yjbF" /locus_tag="STM4223" /note="Group 4 capsule polysaccharide lipoprotein gfcB, YjbF; Region: YjbF; pfam11102" /db_xref="CDD:431654" gene 4443197..4443948 /gene="yjbG" /locus_tag="STM4224" /db_xref="GeneID:1255750" regulatory 4443197..4443202 /regulatory_class="ribosome_binding_site" /gene="yjbF" /locus_tag="STM4223" /note="putative RBS for yjbG; RegulonDB:STMS1H004130" CDS 4443211..4443948 /gene="yjbG" /locus_tag="STM4224" /note="similar to E. coli orf, hypothetical protein (AAC76998.1); Blastp hit to AAC76998.1 (245 aa), 74% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_463089.1" /db_xref="GeneID:1255750" /translation="MMKRTISALALAFVASSAFASGTVTVFTQGNSEPKTLTDAERLL DLVGQPRLATSWWPAAVIGEEQATVTARQQQQELLGRLAVLSAEEDGDAAAAINTLRR QIQAVKVTGRQFVNLDPDVVRVSERGNPPLQGHYMLWVGPQPTQVTLFGLISQPGSQP FVPGRDVASYLEDQRLLSGADRSYAWVVYPDGRSQKAPVAYWNKRHIEPMPGSIIFVG FADSLWRGTPEAINADILHTLTQRIPE" misc_feature 4443268..4443639 /gene="yjbG" /locus_tag="STM4224" /note="Capsule biosynthesis GfcC, N-terminal; Region: Caps_syn_GfcC_N; pfam20616" /db_xref="CDD:466765" misc_feature 4443673..4443942 /gene="yjbG" /locus_tag="STM4224" /note="Capsule biosynthesis GfcC C-terminal; Region: Caps_syn_GfcC_C; pfam06251" /db_xref="CDD:461862" gene 4443940..4446044 /gene="yjbH" /locus_tag="STM4225" /db_xref="GeneID:1255751" regulatory 4443940..4443945 /regulatory_class="ribosome_binding_site" /gene="yjbG" /locus_tag="STM4224" /note="putative RBS for yjbH; RegulonDB:STMS1H004131" CDS 4443948..4446044 /gene="yjbH" /locus_tag="STM4225" /note="similar to E. coli orf, hypothetical protein (AAC76999.1); Blastp hit to AAC76999.1 (698 aa), 92% identity in aa 1 - 698" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_463090.1" /db_xref="GeneID:1255751" /translation="MKKTHLLSVLALGISAACHAETYPAPVGPSQSDFGGVGLLQTPT ARMAREGEMSLNYRDNDQYRYYSASVQLFPWLETTLRYTDVRTKKYSSVESFSGDQTY KDKAFDVKLRLWEESYWMPQVAVGARDIGGTGLFDAEYIVASKAWGPFDFSLGLGWGY LGTSGNVSNPFCSYSDKFCSRDNSYKEAGSVDGSDMFHGPASLFGGVEYQTPWQPLRL KLEYEGNNYQQDFAGKLEQKSKFNVGAIYRVTDWADVNLSYERGNTFMFGVTLRTNFN DLRPAYHDNSRPQYRPQPQDAILQHSVVANQLTLLKYNAGLADPKIQVKGDTLYVTGE QVKYRDSREGIVRANRIVMNDLPEGIRTIRVTENRLNLPQVTTETDVASLKRHLEGEP LGHETPLAQKRVEPIVPESTEQGWYIDKSRVDFHLDPVLNQSVGGPENFYMYQLGVMG TADLWVTDHLLTTGSVFANIANNYDKFNYTNPPKDSHLPRVRTHVREYVQNDVYVNNL QANYFQYFGNGFYGQVYGGYLETMFGGAGAEVLYRPVDSNWAFGLDANYVKQRDWRSA QDMMKFTDYSVKTGHLTAYWTPSFAQDVLVKASVGQYLAGDKGGTLEIAKRFDSGVVV GGYATITDASPDEYGEGDFTKGVYVSVPLDIFSSGPTRSRAAIGWTPLTRDGGQQLGR KFGLYDMTSDRSVNFR" misc_feature 4444035..4446023 /gene="yjbH" /locus_tag="STM4225" /note="Exopolysaccharide biosynthesis protein YbjH; Region: YjbH; pfam06082" /db_xref="CDD:428757" gene 4446175..4446597 /gene="yjbA" /locus_tag="STM4226" /db_xref="GeneID:1255752" regulatory 4446175..4446180 /regulatory_class="ribosome_binding_site" /gene="yjbA" /locus_tag="STM4226" /note="putative RBS for yjbA; RegulonDB:STMS1H004132" CDS 4446187..4446597 /gene="yjbA" /locus_tag="STM4226" /note="similar to E. coli orf, hypothetical protein (AAC77000.1); Blastp hit to AAC77000.1 (136 aa), 87% identity in aa 1 - 136" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463091.1" /db_xref="GeneID:1255752" /translation="MMPLSRSRLEFIATILQNVLNLGLLTLGLILVVFLGKETVHLAD ALFAPEQASKYELVEGLVIYFLYFEFIALIVKYFKSGLHFPLRYFVYIGITAIVRLII VDHKTPMDVLLYSAAILLLVITLWLCNSNRLRRE" misc_feature 4446199..4446594 /gene="yjbA" /locus_tag="STM4226" /note="phosphate-starvation-inducible protein PsiE; Provisional; Region: PRK02833" /db_xref="CDD:235075" gene complement(4446763..4447669) /gene="malG" /locus_tag="STM4227" /db_xref="GeneID:1255753" CDS complement(4446763..4447653) /gene="malG" /locus_tag="STM4227" /note="ABC superfamily (membrane); maltose transport system permease protein MALG. (SW:MALG_SALTY)" /codon_start=1 /transl_table=11 /product="maltose transport protein" /protein_id="NP_463092.1" /db_xref="GeneID:1255753" /translation="MAMVQPKSQKLRLLITHLGLLIFIAAIMFPLLMVIAISLREGNF ATGSLIPDKISWEHWRLALGFSVEHADGRVTPPPFPVLLWLWNSVKIAGITAIGIVAL STTCAYAFARMRFPGKATLLKGMLIFQMFPAVLSLVALYALFDRLGQYIPFIGLNTHG GVIFAYLGGIALHVWTIKGYFETIDSSLEEAAALDGATPWQAFRLVLLPLSVPILAVV FILSFIAAITEVPVASLLLRDVDSYTLAVGMQQYLNPQNYLWGDFAAAAVLSAIPITL VFLLAQRWLVNGLTAGGVKG" misc_feature complement(4446766..4447653) /gene="malG" /locus_tag="STM4227" /note="maltose ABC transporter permease MalG; Region: malG; PRK10998" /db_xref="CDD:182891" misc_feature complement(order(4446832..4446834,4446841..4446846, 4446853..4446858,4446862..4446867,4446874..4446879, 4446907..4446912,4446949..4446954,4446961..4446972, 4446991..4446993,4447000..4447005,4447045..4447047, 4447096..4447098,4447105..4447110,4447120..4447122, 4447126..4447131,4447138..4447140,4447144..4447146, 4447150..4447155,4447231..4447233,4447237..4447242, 4447249..4447278,4447282..4447293,4447321..4447323, 4447336..4447341,4447348..4447353)) /gene="malG" /locus_tag="STM4227" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:119394" misc_feature complement(order(4446955..4446972,4447231..4447275)) /gene="malG" /locus_tag="STM4227" /note="conserved gate region [active]" /db_xref="CDD:119394" misc_feature complement(order(4446877..4446879,4446907..4446909, 4446916..4446918,4446952..4446954,4447168..4447170, 4447231..4447233)) /gene="malG" /locus_tag="STM4227" /note="putative PBP binding loops [active]" /db_xref="CDD:119394" misc_feature complement(order(4447024..4447026,4447036..4447041, 4447057..4447095)) /gene="malG" /locus_tag="STM4227" /note="ABC-ATPase subunit interface [active]" /db_xref="CDD:119394" regulatory complement(4447664..4447669) /regulatory_class="ribosome_binding_site" /gene="malG" /locus_tag="STM4227" /note="putative RBS for malG; RegulonDB:STMS1H004133" gene complement(4447668..4449225) /gene="malF" /locus_tag="STM4228" /db_xref="GeneID:1255754" CDS complement(4447668..4449212) /gene="malF" /locus_tag="STM4228" /note="ABC superfamily (membrane); maltose transport system permease protein MALF. (SW:MALF_SALTY)" /codon_start=1 /transl_table=11 /product="maltose transport protein" /protein_id="NP_463093.1" /db_xref="GeneID:1255754" /translation="MDVIKKKHWWQSDQLKWSVIGLLGLLVGYLVVLMYVQGEYLFAI MTLILSSAGLYIFANRKTYAWRYVYPGLAGMGLFVLFPLVCTIAIAFTNYSSTNQLTF ERAQQVLMDRSYQAGKTYNFGLYPTGDEWQLALTDGETGKHYLSDAFSFGGEQKLQLK ETDALPGGERANLRIITQNRLALNQITAVLPDESKVIMSSLRQFSGTRPLYTLADDGL LTNNQSGVKYRPNNDSGYYQSINADGSWGDEKLSPGYTVTIGAKNFTRVFTDEGIQKP FFAIFVWTVVFSVLTVVLTVAVGMVLACLVQWEALKGKAIYRVLLILPYAVPSFISIL IFKGLFNQSFGEINMMLSALFGIKPAWFSDPNTARAMVIIVNTWLGYPYMMILCMGLL KAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFAFNFNNFVLIQLLTNG GPDRLGTTTPAGYTDLLVSYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKA TRMKFD" misc_feature complement(4447671..4449212) /gene="malF" /locus_tag="STM4228" /note="maltose ABC transporter permease MalF; Region: malF; PRK10999" /db_xref="CDD:236816" regulatory complement(4449220..4449225) /regulatory_class="ribosome_binding_site" /gene="malF" /locus_tag="STM4228" /note="putative RBS for malF; RegulonDB:STMS1H004134" gene complement(4449344..4450603) /gene="malE" /locus_tag="STM4229" /db_xref="GeneID:1255755" CDS complement(4449344..4450543) /gene="malE" /locus_tag="STM4229" /note="ABC superfamily (bind_prot); substrate recognition for transport and chemotaxis; maltose-binding periplasmic protein precursor (maltodextrin-binding protein) (MMBP). (SW:MALE_SALTY)" /codon_start=1 /transl_table=11 /product="maltose transport protein" /protein_id="NP_463094.3" /db_xref="GeneID:1255755" /translation="MGDMKIKTGVGILALSALTTMMISAPALAKIEEGKLVIWINGDK GYNGLAEVGKKFEQDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAHDRFGGYAQS GLLAEVTPDKAFQDKLYPFTWDAVRYNGKLIAYPIAVEALSLIYNKDLVPNPPKTWEE IPALDKELKVKGKSAIMFNLQEPYFTWPLIAADGGYAFKFENGKYDVKDVGVDNAGAK AGLTFLIDMIKNKNMSADTDYSIAEAAFNKGETAMTINGPWAWSNIDKSKVNYGVTLL PTFKGKPSKPFVGVLSAGINAASPNKELAKEFLENYLLTDQGLEAVNKDKPLGAVALK SFQEQLAKDPRIAATMDNAQKGEIMPNIPQMSAFWYAVRTAVINAASGRQTVDAALKD AQSRITK" misc_feature complement(4449347..4450534) /gene="malE" /locus_tag="STM4229" /note="maltose/maltodextrin ABC transporter substrate-binding protein MalE; Region: malE; PRK09474" /db_xref="CDD:236533" misc_feature complement(order(4449425..4449427,4449437..4449439, 4449467..4449469,4449767..4449769,4449989..4450000, 4450124..4450126,4450259..4450264,4450271..4450273, 4450412..4450417,4450421..4450423)) /gene="malE" /locus_tag="STM4229" /note="chemical substrate binding site [chemical binding]; other site" /db_xref="CDD:270374" regulatory complement(4450576..4450584) /regulatory_class="minus_10_signal" /gene="malE" /locus_tag="STM4229" /note="putative -10_signal for malE; RegulonDB:STMLTH004656" regulatory complement(4450595..4450603) /regulatory_class="minus_35_signal" /gene="malE" /locus_tag="STM4229" /note="putative -35_signal for malE; RegulonDB:STMLTH004656" protein_bind complement(4450607..4450644) /note="putative binding site for MalT, RegulonDB: STMS1H000269" /bound_moiety="MalT" protein_bind 4450613..4450625 /note="putative binding site for MalT, RegulonDB: STMS1H000276" /bound_moiety="MalT" protein_bind complement(4450646..4450661) /note="putative binding site for CRP, RegulonDB: STMS1H000109" /bound_moiety="CRP" protein_bind 4450647..4450662 /note="putative binding site for CRP, RegulonDB: STMS1H000065" /bound_moiety="CRP" protein_bind 4450671..4450691 /note="putative binding site for CRP, RegulonDB: STMS1H000074" /bound_moiety="CRP" protein_bind complement(4450697..4450703) /note="putative binding site for CRP, RegulonDB: STMS1H000063" /bound_moiety="CRP" protein_bind complement(4450703..4450723) /note="putative binding site for CRP, RegulonDB: STMS1H000087" /bound_moiety="CRP" protein_bind 4450707..4450727 /note="putative binding site for CRP, RegulonDB: STMS1H000095" /bound_moiety="CRP" protein_bind complement(4450764..4450822) /note="putative binding site for MalT, RegulonDB: STMS1H000272" /bound_moiety="MalT" protein_bind 4450773..4450783 /note="putative binding site for MalT, RegulonDB: STMS1H000271" /bound_moiety="MalT" protein_bind 4450805..4450817 /note="putative binding site for MalT, RegulonDB: STMS1H000270" /bound_moiety="MalT" protein_bind complement(4450842..4450857) /note="putative binding site for MalT, RegulonDB: STMS1H000274" /bound_moiety="MalT" gene 4450883..4452005 /gene="malK" /locus_tag="STM4230" /db_xref="GeneID:1255756" regulatory 4450883..4450888 /regulatory_class="ribosome_binding_site" /gene="malK" /locus_tag="STM4230" /note="putative RBS for malK; RegulonDB:STMS1H004135" CDS 4450896..4452005 /gene="malK" /locus_tag="STM4230" /note="bifunctional; ABC superfamily (atp_bind); maltose/maltodextrin transport ATP-binding protein malk. (SW:MALK_SALTY); phenotypic repressor of mal operon" /codon_start=1 /transl_table=11 /product="maltose transport protein" /protein_id="NP_463095.1" /db_xref="GeneID:1255756" /translation="MASVQLRNVTKAWGDVVVSKDINLDIHDGEFVVFVGPSGCGKST LLRMIAGLETITSGDLFIGETRMNDIPPAERGVGMVFQSYALYPHLSVAENMSFGLKL AGAKKEVMNQRVNQVAEVLQLAHLLERKPKALSGGQRQRVAIGRTLVAEPRVFLLDEP LSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKP LELYHYPADRFVAGFIGSPKMNFLPVKVTATAIEQVQVELPNRQQIWLPVESRGVQVG ANMSLGIRPEHLLPSDIADVTLEGEVQVVEQLGHETQIHIQIPAIRQNLVYRQNDVVL VEEGATFAIGLPPERCHLFREDGSACRRLHQEPGV" misc_feature 4450896..4452002 /gene="malK" /locus_tag="STM4230" /note="maltose/maltodextrin ABC transporter ATP-binding protein MalK; Region: PRK11000" /db_xref="CDD:182893" gene 4452083..4453452 /gene="lamB" /locus_tag="STM4231" /db_xref="GeneID:1255757" regulatory 4452083..4452088 /regulatory_class="ribosome_binding_site" /gene="lamB" /locus_tag="STM4231" /note="putative RBS for lamB; RegulonDB:STMS1H004136" CDS 4452094..4453452 /gene="lamB" /locus_tag="STM4231" /note="maltose high-affinity receptor; facilitates diffusion of maltose and maltoseoligosaccharides; maltoporin precursor (maltose-inducible porin) (lambda receptorprotein). (SW:LAMB_SALTY)" /codon_start=1 /transl_table=11 /product="phage lambda receptor protein" /protein_id="NP_463096.1" /db_xref="GeneID:1255757" /translation="MMITLRKLPLAVAVAAGVMSAQAMAVDFHGYARSGIGWTGSGGE QQCFQATGAQSKYRLGNECETYAELKLGQEVWKEGDKSFYFDTNVAYSVNQQNDWEST DPAFREANVQGKNLIEWLPGSTIWAGKRFYQRHDVHMIDFYYWDISGPGAGIENIDLG FGKLSLAATRSTEAGGSYTFSSQNIYDEVKDTANDVFDVRLAGLQTNPDGVLELGVDY GRANTTDGYKLADGASKDGWMFTAEHTQSMLKGYNKFVVQYATDAMTTQGKGQARGSD GSSSFTEELSDGTKINYANKVINNNGNMWRILDHGAISLGDKWDLMYVGMYQNIDWDN NLGTEWWTVGVRPMYKWTPIMSTLLEVGYDNVKSQQTGDRNNQYKITLAQQWQAGDSI WSRPAIRIFATYAKWDEKWGYIKDGDNISRYAAATNSGISTNSRGDSDEWTFGAQMEI WW" misc_feature 4452094..4453449 /gene="lamB" /locus_tag="STM4231" /note="maltoporin LamB; Region: lamB; PRK09360" /db_xref="CDD:236481" gene 4453604..4454533 /gene="malM" /locus_tag="STM4232" /db_xref="GeneID:1255758" regulatory 4453604..4453609 /regulatory_class="ribosome_binding_site" /gene="malM" /locus_tag="STM4232" /note="putative RBS for malM; RegulonDB:STMS1H004137" CDS 4453616..4454533 /gene="malM" /locus_tag="STM4232" /note="maltose operon periplasmic protein precursor. (SW:MALM_SALTY)" /codon_start=1 /transl_table=11 /product="periplasmic protein of mal regulon" /protein_id="NP_463097.1" /db_xref="GeneID:1255758" /translation="MKMKKSLVALCLTAGLFASVPGISLAEVNYVPQNTSAAPVIPAA ALQQLTWTPVDQSKTQSTQLATGGQRLDVAGITGPVAAYSVPANIGELTLTLTSEVNK QASVFAPNVLILDQNMTPSAFFPSSYFTYQQPGVMSADRLEGVMRLTPALGQQKLYVL VFTTEKDLQQTTTLLDPAKAYAKGVGNSIPDIPDPVARHTTDGVVKLKVKTNSSSSVL VGPLFGSSGTGPVTVGNTAAPVAAPAPVAPKKSEPMLNDTESYFNKAIKDAVAKGDVD KALKLLDEAERLGSTSARSTFISSVKGKG" misc_feature 4453619..4454530 /gene="malM" /locus_tag="STM4232" /note="maltose operon protein MalM; Region: PRK10564" /db_xref="CDD:236716" gene 4454700..4455211 /gene="ubiC" /locus_tag="STM4233" /db_xref="GeneID:1255759" regulatory 4454700..4454705 /regulatory_class="ribosome_binding_site" /gene="ubiC" /locus_tag="STM4233" /note="putative RBS for ubiC; RegulonDB:STMS1H004138" CDS 4454714..4455211 /gene="ubiC" /locus_tag="STM4233" /EC_number="4.-.-.-" /note="similar to E. coli chorismate lyase (AAC77009.1); Blastp hit to AAC77009.1 (202 aa), 86% identity in aa 38 - 202" /codon_start=1 /transl_table=11 /product="chorismate pyruvate lyase" /protein_id="NP_463098.1" /db_xref="GeneID:1255759" /translation="MSHPALTQLRALRYFDAIPALEPHLLDWLLLEDSMTKRFEQQGK RVSVTLIREAFVGQSEVEEASGLLPSESRYWLREILLCADGEPWLAGRTVVPESTLCG PEQVLQHLGKTPLGRYLFTSSTLTRDFIEIGRDATLWGRRSRLRLSGKPLLLTELFLP ASPLY" misc_feature 4454714..4455208 /gene="ubiC" /locus_tag="STM4233" /note="chorismate pyruvate lyase; Provisional; Region: ubiC; PRK11655" /db_xref="CDD:236949" gene 4455212..4456097 /gene="ubiA" /locus_tag="STM4234" /db_xref="GeneID:1255760" regulatory 4455212..4455217 /regulatory_class="ribosome_binding_site" /gene="ubiA" /locus_tag="STM4234" /note="putative RBS for ubiA; RegulonDB:STMS1H004139" CDS 4455225..4456097 /gene="ubiA" /locus_tag="STM4234" /EC_number="2.5.1.-" /note="similar to E. coli 4-hydroxybenzoate-octaprenyltransferase (AAC77010.1); Blastp hit to AAC77010.1 (290 aa), 93% identity in aa 1 - 290" /codon_start=1 /transl_table=11 /product="p-hydroxybenzoate: octaprenyltransferase" /protein_id="NP_463099.1" /db_xref="GeneID:1255760" /translation="MEWSLTQSKLLAFHRLMRTDKPIGALLLLWPTLWALWVATPGMP QLWILAVFVAGVWLMRAAGCVVNDYADRKFDGHVKRTVNRPLPSGAVTEKEARNLFVV LVLLAFLLVLTLNAMTILLSVAALALAWVYPFMKRYTHLPQVVLGAAFGWSIPMAFAA VSESLPLSCWLMFLANILWAVAYDTQYAMVDRDDDIKIGIKSTAILFGRYDTLIIGIL QLGVMALMALIGWLNGLGWGYYWAVLVAGALFVYQQKLIANREREACFKAFMNNNYVG LVLFLGLAMSYWHF" misc_feature 4455252..4456088 /gene="ubiA" /locus_tag="STM4234" /note="UbiA family of prenyltransferases (PTases); Region: PT_UbiA; cl00337" /db_xref="CDD:469727" gene complement(4456196..4458633) /gene="plsB" /locus_tag="STM4235" /db_xref="GeneID:1255761" CDS complement(4456196..4458616) /gene="plsB" /locus_tag="STM4235" /EC_number="2.3.1.15" /note="similar to E. coli glycerol-3-phosphate acyltransferase (AAC77011.1); Blastp hit to AAC77011.1 (827 aa), 94% identity in aa 21 - 826" /codon_start=1 /transl_table=11 /product="glycerolphosphate acyltransferase activity" /protein_id="NP_463100.1" /db_xref="GeneID:1255761" /translation="MSGWPRIYYKLLNLPLSILVKSKSIPAEPAQELGLDTSRPIMYV LPYNSKADLLTLRAQCLAHDLPDPLEPLEIDGALLPRYVFIHGGPRVFTYYTPKEESV KLFHDYLDLHRSNPALDVQMVPVSVMFGRAPGREKGEDNPPLRMLNGVQKFFAISWLG RDSFVRFSPSVSLRRMADEHGTDKIIAQKLARVARMHFARQRLAAVGPRLPARQDLFN KLLASKAIARAVEDEARSKKISHEKAQQNAIALMEEIAANFSYEMIRLTDRILGFTWN RLYQGINVHNAERVRQLAHDGHEIVYVPCHRSHMDYLLLSYVLYHQGLVPPHIAAGIN LNFWPAGPIFRRLGAFFIRRTFKGNKLYSTVFREYLGELFSRGYSVEYFVEGGRSRTG RLLDPKTGTLSMTIQAMLRGGTRPITLVPIYIGYEHVMEVGTYAKELRGATKEKESLP QMLKGLSKLRNLGQGYVNFGEPMPLMTYLNQHVPEWRESIDPIEAIRPAWLTPTVNSI AADLMVRINNAGAANAMNLCCTALLASRQRSLTREQLTEQLDCYLDLMRNVPYSTDST VPAASAGELIAHALQMNKFEVEKDTIGDIIILPREQAVLMTYYRNNIAHMLIMPSLMA AIITQHRRISRDALQQHVEALYPMLKAELFLRWEREELASVIDALASEMQRQGLITLQ DDELHINPTHSRTLQLLAAGARETLQRYAITFWLLSANPSINRSTLEKESRTVAQRLS VLHGINAPEFFDKAVFSSLVLTLRDEGYISDTGDAEPAETMKIYQMLADLITSDVRLT IESATQGE" misc_feature complement(4456199..4458616) /gene="plsB" /locus_tag="STM4235" /note="glycerol-3-phosphate 1-O-acyltransferase PlsB; Region: PRK04974" /db_xref="CDD:235325" misc_feature complement(order(4457453..4457461,4457612..4457623, 4457684..4457686,4457690..4457692,4457699..4457701)) /gene="plsB" /locus_tag="STM4235" /note="putative acyl-acceptor binding pocket [active]" /db_xref="CDD:153255" regulatory complement(4458628..4458633) /regulatory_class="ribosome_binding_site" /gene="plsB" /locus_tag="STM4235" /note="putative RBS for plsB; RegulonDB:STMS1H004140" gene 4458775..4459155 /gene="dgkA" /locus_tag="STM4236" /db_xref="GeneID:1255762" regulatory 4458775..4458780 /regulatory_class="ribosome_binding_site" /gene="dgkA" /locus_tag="STM4236" /note="putative RBS for dgkA; RegulonDB:STMS1H004141" CDS 4458787..4459155 /gene="dgkA" /locus_tag="STM4236" /EC_number="2.7.1.107" /note="similar to E. coli diacylglycerol kinase (AAC77012.1); Blastp hit to AAC77012.1 (122 aa), 86% identity in aa 1 - 121" /codon_start=1 /transl_table=11 /product="diacylglycerol kinase" /protein_id="NP_463101.1" /db_xref="GeneID:1255762" /translation="MANNTTGFTRIIKAAGYSWKGFRAAWTHEAAFRQESLAVLLGVI IACWLDVDAITRVLLIGSVLLIMIVEILNSAIEAVVDRIGSEYHELSGRAKDMGSAAV LLSIFVALMTWGILLWSHFR" misc_feature 4458811..4459137 /gene="dgkA" /locus_tag="STM4236" /note="Integral membrane diacylglycerol kinase; Region: DAGK_IM; cd14264" /db_xref="CDD:260133" misc_feature order(4458811..4458813,4458826..4458828,4458838..4458840, 4458847..4458849,4458874..4458876,4458883..4458885, 4458889..4458891,4458994..4458996,4459003..4459008, 4459015..4459017,4459027..4459032,4459066..4459074, 4459078..4459083,4459087..4459089) /gene="dgkA" /locus_tag="STM4236" /note="putative active site [active]" /db_xref="CDD:260133" misc_feature order(4458832..4458852,4458856..4458861,4458943..4458951, 4458955..4458960,4458967..4458969,4458976..4458978, 4458988..4458993,4458997..4459002,4459006..4459014, 4459018..4459026,4459030..4459035,4459048..4459050, 4459054..4459059,4459066..4459068,4459075..4459077, 4459084..4459089,4459096..4459101,4459108..4459110, 4459120..4459122,4459129..4459134) /gene="dgkA" /locus_tag="STM4236" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:260133" misc_feature order(4458844..4458846,4458871..4458873,4458994..4458996, 4459015..4459017,4459027..4459029,4459069..4459074) /gene="dgkA" /locus_tag="STM4236" /note="putative active site [active]" /db_xref="CDD:260133" misc_feature order(4458871..4458873,4459015..4459017) /gene="dgkA" /locus_tag="STM4236" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:260133" gene 4459198..4459872 /gene="lexA" /locus_tag="STM4237" /db_xref="GeneID:1255763" regulatory 4459198..4459206 /regulatory_class="minus_35_signal" /gene="lexA" /locus_tag="STM4237" /note="putative -35_signal for lexA; RegulonDB:STMLTH004657" protein_bind 4459219..4459235 /gene="lexA" /locus_tag="STM4237" /note="putative binding site for LexA, RegulonDB: STMS1H000241" /bound_moiety="LexA" regulatory 4459222..4459230 /regulatory_class="minus_10_signal" /gene="lexA" /locus_tag="STM4237" /note="putative -10_signal for lexA; RegulonDB:STMLTH004657" protein_bind 4459239..4459259 /gene="lexA" /locus_tag="STM4237" /note="putative binding site for LexA, RegulonDB: STMS1H000249" /bound_moiety="LexA" regulatory 4459253..4459258 /regulatory_class="ribosome_binding_site" /gene="lexA" /locus_tag="STM4237" /note="putative RBS for lexA; RegulonDB:STMS1H004142" CDS 4459264..4459872 /gene="lexA" /locus_tag="STM4237" /EC_number="3.4.21.88" /note="transcriptional repressor (LexA family); LEXA repressor. (SW:LEXA_SALTY)" /codon_start=1 /transl_table=11 /product="SOS response regulator" /protein_id="NP_463102.1" /db_xref="GeneID:1255763" /translation="MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAE EHLKALARKGVLEIVSGASRGIRLLQEEEDGLPLVGRVAAGEPLLAQQHIEGHYQVDP SLFKPSADFLLRVSGMSMKDIGIMDGDLLAVHKTQDVRNGQVVVARIDDEVTVKRLKK QGNKVELLPENSEFTPIVVDLREQSFTIEGLAVGVIRNGEWL" misc_feature 4459264..4459863 /gene="lexA" /locus_tag="STM4237" /note="SOS regulatory protein LexA; Region: lexA; TIGR00498" /db_xref="CDD:273106" gene 4460038..4461376 /gene="dinF" /locus_tag="STM4238" /db_xref="GeneID:1255764" regulatory 4460038..4460043 /regulatory_class="ribosome_binding_site" /gene="dinF" /locus_tag="STM4238" /note="putative RBS for dinF; RegulonDB:STMS1H004143" CDS 4460051..4461376 /gene="dinF" /locus_tag="STM4238" /note="induced by UV and mitomycin C; SOS, lexA regulon; similar to E. coli DNA-damage-inducible protein F (AAC77014.1); Blastp hit to AAC77014.1 (459 aa), 89% identity in aa 19 - 457" /codon_start=1 /transl_table=11 /product="DNA-damage-inducible protein F" /protein_id="NP_463103.1" /db_xref="GeneID:1255764" /translation="MPLFTSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVF LGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQALARALIQPLLLALGAGVM IVLFRTPLIELALHIVGGNDAVLVQARRFLEIRWLSAPASLANLVLLGWLLGVQYARA PVILLVVGNILNIALDLWLVMGLHMNVQGAALATVIAEYVTLLIGLMMVRKVLHLRGV SLDMLKQAWRGNVRRLLALNRDIMLRSLLLQLCFGAITVSGARLGSDIIAVNAVLMTL LTFTAYALDGFAYAVEAHSGQAYGARDGSKLLDVWRAACRQSGIVALLFSTVYALAGE HIVALLTSLPQIQLLADRYLIWQVVLPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAG GFALTLFALPVLGNHGLWLALTVFLALRGLSLSLIWRRHWREGTWFARS" misc_feature 4460051..4461373 /gene="dinF" /locus_tag="STM4238" /note="DNA-damage-inducible SOS response protein; Provisional; Region: PRK10367" /db_xref="CDD:182413" gene 4461373..4461486 /locus_tag="STM4239" /db_xref="GeneID:1255765" CDS 4461373..4461486 /locus_tag="STM4239" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463104.1" /db_xref="GeneID:1255765" /translation="MTVKNSEYKTEGRIPAYNYYHVQQKLQSIWANNTCYS" gene 4461496..4461717 /gene="yjbJ" /locus_tag="STM4240" /db_xref="GeneID:1255766" regulatory 4461496..4461501 /regulatory_class="ribosome_binding_site" /gene="yjbJ" /locus_tag="STM4240" /note="putative RBS for yjbJ; RegulonDB:STMS1H004144" CDS 4461505..4461717 /gene="yjbJ" /locus_tag="STM4240" /note="similar to E. coli orf, hypothetical protein (AAC77015.1); Blastp hit to AAC77015.1 (69 aa), 95% identity in aa 1 - 69" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463105.1" /db_xref="GeneID:1255766" /translation="MMNKDEAGGNWKQFKGKMKEQWGKLTDDDMTVIEGKRDQLVGKI QERYGYQKDQAEKEVVDWETRNNYRW" misc_feature 4461508..4461714 /gene="yjbJ" /locus_tag="STM4240" /note="hypothetical protein; Provisional; Region: PRK10428" /db_xref="CDD:182452" gene complement(4461816..4462341) /gene="zur" /locus_tag="STM4241" /db_xref="GeneID:1255767" CDS complement(4461816..4462331) /gene="zur" /locus_tag="STM4241" /note="Fur family; similar to E. coli putative regulator (AAC77016.1); Blastp hit to AAC77016.1 (191 aa), 92% identity in aa 21 - 191" /codon_start=1 /transl_table=11 /product="transcriptional repressor of znuABC operon" /protein_id="NP_463106.1" /db_xref="GeneID:1255767" /translation="MEKTTTQELLAQAEKLCAQRNVRLTPQRLEVLRLMSLQQGAISA YDLLDLLRETEPQAKPPTIYRALDFLLEQGFVHKVESTNSYVVCHLFDQPTHSSAMFI CDRCGVVKEECAEGVEDIMHTLAAKMGFALRHNVIEAHGLCPACVEVEACRHPGNCGH DHSVLVKKKPR" misc_feature complement(4461825..4462331) /gene="zur" /locus_tag="STM4241" /note="zinc uptake transcriptional repressor Zur; Region: PRK11639" /db_xref="CDD:183251" regulatory complement(4462336..4462341) /regulatory_class="ribosome_binding_site" /gene="zur" /locus_tag="STM4241" /note="putative RBS for zur; RegulonDB:STMS1H004145" gene 4462574..4463888 /locus_tag="STM4242" /db_xref="GeneID:1255768" regulatory 4462574..4462579 /regulatory_class="ribosome_binding_site" /locus_tag="STM4242" /note="putative RBS for STM4242; RegulonDB:STMS1H004146" CDS 4462578..4463888 /locus_tag="STM4242" /codon_start=1 /transl_table=11 /product="putative outer membrane or exported protein" /protein_id="NP_463107.1" /db_xref="GeneID:1255768" /translation="MNKNVKLSLIAIAVSLFMAKQASAANTWTEARNDAMGGTGVASA NYGSGVLLNPALLAKAKPEDNITVVLPAVGVQITDKDNLQDEIDDISDKVDYYDEVVD NLTLGQILLNPRGVLNQFQGAARDLADELEYLNGKTARANAGAGLAVSIPGQTLSVAF IAKGYAHGRVSSSIDQNDIQYLRDIQHDERVALREAGRAALLGSDEITKHLNSTASGR VAIVSDYGIALAKQFVVGEVPVSIGVTPKLQKTWLYNYTTSIYNYDSSDWNSSRYRND DTGFNIDAGLAADIGENWTLGVSGQNLVSRDIDTKDIYITNGMTGETTNYKDTYQIRP LVTAGIAWHNDLLTVSADGDLTETKGFKSEDNSQYVGVGAEVRPLSWLAVRAGYRADV KNNDSNVVTGGLGFAPFNRVHLDLMGLYGEDETWGAGAQLTMTF" misc_feature 4462734..4463639 /locus_tag="STM4242" /note="F plasmid transfer operon, TraF, protein; Region: TraF_2; pfam13729" /db_xref="CDD:433437" gene 4463976..4464974 /gene="yjbN" /locus_tag="STM4243" /db_xref="GeneID:1255769" CDS 4463976..4464974 /gene="yjbN" /locus_tag="STM4243" /note="possibly dehydrogenases; nifR3 family; similar to E. coli orf, hypothetical protein (AAC77019.1); Blastp hit to AAC77019.1 (345 aa), 90% identity in aa 7 - 345" /codon_start=1 /transl_table=11 /product="putative TIM-barrel enzyme" /protein_id="NP_463108.1" /db_xref="GeneID:1255769" /translation="MQPETQSSALPAYRFSIAPMLDWTDRHCRYFLRLLSRQTQLYTE MVTTGAIIHGKGDYLAYSEEEHPVALQLGGSDPAQLAHCAKLAEARGYDEINLNVGCP SDRVQNGMFGACLMGNAQLVADCVKAMRDVVSIPVTVKTRIGIDDQDSYAFLCDFIDT VSGQGECEMFIIHARKAWLSGLSPKENREIPPLDYPRVYQLKRDFPHLTMSINGGIKS LEEAKEHLRHMDGVMVGREAYQNPGILAAVDREIFGADTTDADPVAVVRAMYPYIERE LSQGAYLGHITRHMLGLFQGIPGARQWRRYLSENAHKAGADVAVLEQALKLVADKR" misc_feature 4463994..4464968 /gene="yjbN" /locus_tag="STM4243" /note="tRNA dihydrouridine(20/20a) synthase DusA; Region: PRK11815" /db_xref="CDD:236991" gene 4465129..4465384 /gene="yjbO" /locus_tag="STM4244" /db_xref="GeneID:1255770" regulatory 4465129..4465134 /regulatory_class="ribosome_binding_site" /gene="yjbO" /locus_tag="STM4244" /note="putative RBS for yjbO; RegulonDB:STMS1H004147" CDS 4465142..4465384 /gene="yjbO" /locus_tag="STM4244" /note="similar to E. coli orf, hypothetical protein (AAC77020.1); Blastp hit to AAC77020.1 (150 aa), 82% identity in aa 71 - 150" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463109.1" /db_xref="GeneID:1255770" /translation="MLELLFVLGFFLMLMVTGVSLLGILAALVVATAVMFLGGMFALM IKLLPWLLLAVAVVWVIKAVKTPKIPQYQRNNRRFY" misc_feature 4465142..4465330 /gene="yjbO" /locus_tag="STM4244" /note="Phage shock protein G (Phageshock_PspG); Region: Phageshock_PspG; pfam09583" /db_xref="CDD:430698" gene complement(4465559..4466550) /gene="qor" /locus_tag="STM4245" /db_xref="GeneID:1255771" CDS complement(4465559..4466542) /gene="qor" /locus_tag="STM4245" /EC_number="1.6.5.5" /note="similar to E. coli quinone oxidoreductase (AAC77021.1); Blastp hit to AAC77021.1 (327 aa), 90% identity in aa 1 - 327" /codon_start=1 /transl_table=11 /product="NADPH dependent quinone oxidoreductase" /protein_id="NP_463110.1" /db_xref="GeneID:1255771" /translation="MATRIEFHKHGGPEVLQTVEFTPAEPAEHEIQVENKAIGINFID TYIRSGLYPPPSLPAGLGTEAAGVVSKVGNGVEHIRVGDRVVYAQSTLGAYSSVHNVT ADKAAILPDAISFEQAAASFLKGLTVFYLLRKTYEVKPDEPFLFHAAAGGVGLIACQW AKALGAKLIGTVGSAQKAQRALDAGAWQVINYREESIVERVKEITGGKKVRVVYDSVG KDTWEASLDCLQRRGLMVSFGNASGPVTGVNLGILNQKGSLYATRPSLQGYITTREEL TEASNELFSLIASGVIKVDVAENQRYALKDARRAHEVLESRATQGSSLLIP" misc_feature complement(4465562..4466542) /gene="qor" /locus_tag="STM4245" /note="NADPH:quinone reductase; Region: PRK10754" /db_xref="CDD:182701" misc_feature complement(order(4465592..4465594,4465598..4465600, 4465745..4465756,4465817..4465831,4465892..4465897, 4465967..4465969,4466012..4466014,4466024..4466029, 4466084..4466092,4466099..4466101,4466153..4466155, 4466162..4466164,4466174..4466176,4466405..4466407, 4466417..4466422)) /gene="qor" /locus_tag="STM4245" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:176189" misc_feature complement(order(4465736..4465741,4465748..4465771, 4465793..4465810,4465847..4465852,4466138..4466140)) /gene="qor" /locus_tag="STM4245" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176189" regulatory complement(4466545..4466550) /regulatory_class="ribosome_binding_site" /gene="qor" /locus_tag="STM4245" /note="putative RBS for qor; RegulonDB:STMS1H004148" gene 4466589..4468022 /gene="dnaB" /locus_tag="STM4246" /db_xref="GeneID:1255772" regulatory 4466589..4466594 /regulatory_class="ribosome_binding_site" /gene="dnaB" /locus_tag="STM4246" /note="putative RBS for dnaB; RegulonDB:STMS1H004149" CDS 4466607..4468022 /gene="dnaB" /locus_tag="STM4246" /EC_number="3.6.1.-" /note="chromosome replication; chain elongation; replicative DNA helicase. (SW:DNAB_SALTY)" /codon_start=1 /transl_table=11 /product="putative replicative DNA helicase" /protein_id="NP_463111.1" /db_xref="GeneID:1255772" /translation="MAGNKPFNKPQTDARDRDPQVAGIKVPPHSIEAEQSVLGGLMLD NERWDDVAERVVAEDFYTRPHRHIFTEMGRLQESGSPIDLITLAESLERQGQLDSVGG FAYLAELSKNTPSAANISAYADIVRERAVVRDMIAVAHEIADAGYDPQGRNSDELLDL AESRVFQIAENRANKDEGPKSIDQILDATVARIEQLFQQPHDGVTGVDTGYQDLNKKT AGLQRSDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQIMMRMLASL SRVDQTRIRTGQLDDEDWARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREH GGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQR ADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVR LTFNGQWSRFDNYAGPQYDDE" misc_feature 4466607..4468019 /gene="dnaB" /locus_tag="STM4246" /note="replicative DNA helicase DnaB; Region: PRK08006" /db_xref="CDD:181193" gene 4468043..4469133 /gene="alr" /locus_tag="STM4247" /db_xref="GeneID:1255773" regulatory 4468043..4468048 /regulatory_class="ribosome_binding_site" /gene="alr" /locus_tag="STM4247" /note="putative RBS for alr; RegulonDB:STMS1H004150" CDS 4468054..4469133 /gene="alr" /locus_tag="STM4247" /EC_number="5.1.1.1" /note="alanine racemase, biosynthetic. (SW:ALR1_SALTY)" /codon_start=1 /transl_table=11 /product="biosynthetic alanine racemase 1" /protein_id="NP_463112.1" /db_xref="GeneID:1255773" /translation="MQAATVVINRRALRHNLQRLRELAPASKLVAVVKANAYGHGLLE TARTLPDADAFGVARLEEALRLRAGGITQPILLLEGFFDAADLPTISAQCLHTAVHNQ EQLAALEAVELAEPVTVWMKLDTGMHRLGVRPEEAEAFYQRLTHCKNVRQPVNIVSHF ARADEPECGATEHQLDIFNAFCQGKPGQRSIAASGGILLWPQSHFDWARPGIILYGVS PLEHKPWGPDFGFQPVMSLTSSLIAVRDHKAGEPVGYGGTWVSERDTRLGVVAMGYGD GYPRAAPSGTPVLVNGREVPIVGRVAMDMICVDLGPNAQDNAGDPVVLWGEGLPVERI AEMTKVSAYELITRLTSRVAMKYID" misc_feature 4468060..4469127 /gene="alr" /locus_tag="STM4247" /note="Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes, Proteobacterial Alanine Racemases; Region: PLPDE_III_AR_proteobact; cd06827" /db_xref="CDD:143500" misc_feature order(4468147..4468149,4468153..4468155,4468165..4468167, 4468285..4468287,4468417..4468419,4468438..4468440, 4468522..4468524,4468528..4468530,4468630..4468638, 4468678..4468689,4469080..4469082) /gene="alr" /locus_tag="STM4247" /note="active site" /db_xref="CDD:143500" misc_feature order(4468147..4468149,4468153..4468155,4468165..4468167, 4468285..4468287,4468528..4468530,4468630..4468635, 4468678..4468680,4468684..4468689,4469080..4469082) /gene="alr" /locus_tag="STM4247" /note="pyridoxal 5'-phosphate (PLP) binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature order(4468153..4468155,4468165..4468167,4468438..4468440, 4468528..4468530,4469080..4469082) /gene="alr" /locus_tag="STM4247" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:143500" misc_feature order(4468153..4468155,4468816..4468818) /gene="alr" /locus_tag="STM4247" /note="catalytic residues [active]" /db_xref="CDD:143500" misc_feature order(4468777..4468779,4468786..4468788,4468804..4468809, 4468813..4468821,4468858..4468860,4468873..4468875, 4468891..4468893,4468957..4468959,4468963..4468965, 4469074..4469076,4469080..4469085,4469098..4469100, 4469107..4469109) /gene="alr" /locus_tag="STM4247" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:143500" gene 4469271..4470512 /gene="tyrB" /locus_tag="STM4248" /db_xref="GeneID:1255774" regulatory 4469271..4469279 /regulatory_class="minus_35_signal" /gene="tyrB" /locus_tag="STM4248" /note="putative -35_signal for tyrB; RegulonDB:STMLTH004658" protein_bind 4469292..4469314 /gene="tyrB" /locus_tag="STM4248" /note="putative binding site for TyrR, RegulonDB: STMS1H000389" /bound_moiety="TyrR" regulatory 4469298..4469306 /regulatory_class="minus_10_signal" /gene="tyrB" /locus_tag="STM4248" /note="putative -10_signal for tyrB; RegulonDB:STMLTH004658" regulatory 4469304..4469309 /regulatory_class="ribosome_binding_site" /gene="tyrB" /locus_tag="STM4248" /note="putative RBS for tyrB; RegulonDB:STMS1H004151" protein_bind 4469318..4469342 /gene="tyrB" /locus_tag="STM4248" /note="putative binding site for TyrR, RegulonDB: STMS1H000384" /bound_moiety="TyrR" CDS 4469319..4470512 /gene="tyrB" /locus_tag="STM4248" /EC_number="2.6.1.57" /note="tyrosine repressible; aromatic-amino-acid aminotransferase. (SW:TYRB_SALTY)" /codon_start=1 /transl_table=11 /product="tyrosine aminotransferase" /protein_id="NP_463113.1" /db_xref="GeneID:1255774" /translation="MFQKVDAYAGDPILSLMERFKDDSRHDKVNLSIGLYYNEDGIIP QLKTVAEAEARLNAQPHGASLYLPMEGLNTYRHTIAPLLFGADHPVLQQQRVATIQTL GGSGALKVGADFLKRYFPDAGVWVSDPTWENHIAIFAGAGFEVSTYPWYDDATNGIRF NDLLATLNTLPARSIVLLHPCCHNPTGADLTPSQWDAVIEIVKARDLIPFLDIAYQGF GAGMDDDAYVIRAIASAGLPALVSNSFSKIFSLYGERVGGLSVVCEDAEIAARVLGQL KATVRRIYSSPPCFGAQVVATVLGDEALKAGWLAEVDAMRNRIISMRQTLVKELKAEM PDRNFDYLLQQRGMFSYTGLSEEQVDRLRDEFGVYLIASGRMCVAGLNASNVHRVAKA FAAVM" misc_feature 4469319..4470509 /gene="tyrB" /locus_tag="STM4248" /note="aromatic amino acid transaminase; Region: PRK09257" /db_xref="CDD:181731" misc_feature order(4469625..4469633,4469709..4469711,4469868..4469870, 4469961..4469963,4470048..4470050,4470054..4470059, 4470081..4470083) /gene="tyrB" /locus_tag="STM4248" /note="pyridoxal 5'-phosphate binding site [chemical binding]; other site" /db_xref="CDD:99734" misc_feature order(4469634..4469636,4469739..4469741,4469940..4469942, 4470075..4470083,4470189..4470191,4470198..4470200) /gene="tyrB" /locus_tag="STM4248" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:99734" misc_feature 4470057..4470059 /gene="tyrB" /locus_tag="STM4248" /note="catalytic residue [active]" /db_xref="CDD:99734" gene 4470688..4471412 /gene="aphA" /locus_tag="STM4249" /db_xref="GeneID:1255775" regulatory 4470688..4470693 /regulatory_class="ribosome_binding_site" /gene="aphA" /locus_tag="STM4249" /note="putative RBS for aphA; RegulonDB:STMS1H004152" CDS 4470699..4471412 /gene="aphA" /locus_tag="STM4249" /EC_number="3.1.3.2" /note="similar to E. coli diadenosine tetraphosphatase (AAC77025.1); Blastp hit to AAC77025.1 (237 aa), 89% identity in aa 1 - 237" /codon_start=1 /transl_table=11 /product="non-specific acid phosphatase/phosphotransferase, class B" /protein_id="NP_463114.1" /db_xref="GeneID:1255775" /translation="MKKITLALSAVCLLFTLNHSANALVSSPSTLNPGTNVAKLAEQA PVHWVSVAQIENSLTGRPPMAVGFDIDDTVLFSSPGFWRGKKTYSPDSDDYLKNPAFW EKMNNGWDEFSIPKEVARQLIDMHVRRGDSIYFVTGRSQTKTETVSKTLADNFHIPAA NMNPVIFAGDKPEQNTKVQWLQEKNMRIFYGDSDNDITAARDCGIRGIRILRAANSTY KPLPQAGAFGEEVIVNSEY" misc_feature 4470699..4471409 /gene="aphA" /locus_tag="STM4249" /note="Acid phosphatase, class B [Inorganic ion transport and metabolism, General function prediction only]; Region: AphA; COG3700" /db_xref="CDD:442914" gene 4471529..4471957 /gene="yjbQ" /locus_tag="STM4250" /db_xref="GeneID:1255776" regulatory 4471529..4471534 /regulatory_class="ribosome_binding_site" /gene="yjbQ" /locus_tag="STM4250" /note="putative RBS for yjbQ; RegulonDB:STMS1H004153" CDS 4471541..4471957 /gene="yjbQ" /locus_tag="STM4250" /note="similar to E. coli orf, hypothetical protein (AAC77026.1); Blastp hit to AAC77026.1 (138 aa), 78% identity in aa 1 - 138" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463115.1" /db_xref="GeneID:1255776" /translation="MWYQRTITLSEKPRGFHLITDEITDKLSGLPPVETGLLHLLLLH TSASLTLNENCDPTVRADMERHFLKTVPDNAAYEHDYEGADDMPSHIKSSVLGVSLLL PVRQGRLQLGTWQGIWLGEHRIHGGPRKIIATLQGE" misc_feature 4471550..4471948 /gene="yjbQ" /locus_tag="STM4250" /note="Thiamin phosphate synthase YjbQ, UPF0047 family [Coenzyme transport and metabolism]; Region: YjbQ; COG0432" /db_xref="CDD:440201" gene 4471947..4472316 /gene="yjbR" /locus_tag="STM4251" /db_xref="GeneID:1255777" regulatory 4471947..4471952 /regulatory_class="ribosome_binding_site" /gene="yjbR" /locus_tag="STM4251" /note="putative RBS for yjbR; RegulonDB:STMS1H004154" CDS 4471960..4472316 /gene="yjbR" /locus_tag="STM4251" /note="similar to E. coli orf, hypothetical protein (AAC77027.1); Blastp hit to AAC77027.1 (118 aa), 92% identity in aa 1 - 117" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463116.1" /db_xref="GeneID:1255777" /translation="MTISELLQYCMAKPGAEQSVHSDWKATQIKVEDVLFAMVKEVEG RPAASLKTSPELAELLRQQHSDVRPSRHLNKAHWSTVYLDGSLPDSQLYYLVDASYQQ AVNALSEDKRKQLPQS" misc_feature 4471960..4472304 /gene="yjbR" /locus_tag="STM4251" /note="Predicted DNA-binding protein with #double-wing# structural motif, MmcQ/YjbR family [Transcription]; Region: MmcQ; COG2315" /db_xref="CDD:441889" gene complement(4472317..4472661) /locus_tag="STM4252" /db_xref="GeneID:1255778" CDS complement(4472317..4472655) /locus_tag="STM4252" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463117.1" /db_xref="GeneID:1255778" /translation="MASINEIHYLITTAQAEHPVASSAIAEFIQTYKQAREDSDDAIR ESAAFIARALQEHARGWLDDDDMIILLEGQRDLARLRANNAQIALGSRIRSTVIRLID IALALLVGAL" gene complement(4472642..4473100) /locus_tag="STM4253" /db_xref="GeneID:1255779" CDS complement(4472642..4473097) /locus_tag="STM4253" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_463118.1" /db_xref="GeneID:1255779" /translation="MENTMKLPYAITLLLCLFLSACTLPDRFSAVAFQQLTLLQARST RFLQDAARIPWQKETLLKDDRDIRQIFFQAERVARQGGDKHRLDNLALLKNHYLRLYA RVMRRKQPLTYIQAERYQQQNNQVWKLAIQGECLHWGARCTQGDENGVY" regulatory complement(4472656..4472661) /regulatory_class="ribosome_binding_site" /locus_tag="STM4252" /note="putative RBS for STM4252; RegulonDB:STMS1H004155" regulatory complement(4473095..4473100) /regulatory_class="ribosome_binding_site" /locus_tag="STM4253" /note="putative RBS for STM4253; RegulonDB:STMS1H004156" gene complement(4473229..4476217) /gene="uvrA" /locus_tag="STM4254" /db_xref="GeneID:1255780" CDS complement(4473229..4476054) /gene="uvrA" /locus_tag="STM4254" /note="complexes with UvrBC; excinuclease ABC subunit A. (SW:UVRA_SALTY)" /codon_start=1 /transl_table=11 /product="DNA excision repair enzyme" /protein_id="NP_463119.1" /db_xref="GeneID:1255780" /translation="MDKIEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDT LYAEGQRRYVESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTIT EIHDYLRLLFARVGEPRCPDHDVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKG EHTKTLENLASQGYIRARIDGEVCDLSDPPKLELQKKHTIEVVIDRFKVRNDLSQRLA ESFETALELSGGTAVVADMDDEKAEELLFSANFACPICGYSMRELEPRLFSFNNPAGA CPTCDGLGVQQYFDPDRVIQNPDLSLAGGAIRGWDRRNFYYFQMLKSLAEHYKFDVDA PWASLSANVHKVVLYGSGKENIEFKYMNDRGDTSVRRHPFEGVLHNMERRYKETESSA VREELAKFISNRPCASCEGTRLNREARHVFVENTPLPAISDMSIGHAMDFFTNLKLSG QRAKIAEKVLKEIGDRLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGV MYVLDEPSIGLHQRDNERLLGTLIHLRNLGNTVIVVEHDEDAIRAADHVIDIGPGAGV HGGEVVAEGPLEAIMAVPESLTGQYMSGKRKIEVPKQRVPANPEKVLKLTGARGNNLK DVTLTLPVGLFTCITGVSGSGKSTLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHF DKVIDIDQSPIGRTPRSNPATYTGVFTPVRELFAGVPESRSRGYTPGRFSFNVRGGRC EACQGDGVIKVEMHFLPDIYVPCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEARE FFDAVPALARKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYIL DEPTTGLHFADIQQLLDVLHQLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGE ILVAGTPETVAECEASHTARFLKPMLK" misc_feature complement(4473232..4476054) /gene="uvrA" /locus_tag="STM4254" /note="excinuclease ABC subunit UvrA; Region: uvrA; PRK00349" /db_xref="CDD:234734" gene 4476019..4476135 /locus_tag="STM4255" /db_xref="GeneID:1255781" CDS 4476019..4476135 /locus_tag="STM4255" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463120.1" /db_xref="GeneID:1255781" /translation="MGAGAPNFDLIHSPFPVETRMPGLFEGQTAETANYDTI" regulatory complement(4476056..4476061) /regulatory_class="ribosome_binding_site" /gene="uvrA" /locus_tag="STM4254" /note="putative RBS for uvrA; RegulonDB:STMS1H004157" protein_bind 4476136..4476156 /note="putative binding site for LexA, RegulonDB: STMS1H000246" /bound_moiety="LexA" protein_bind complement(4476136..4476154) /gene="uvrA" /locus_tag="STM4254" /note="putative binding site for LexA, RegulonDB: STMS1H000244" /bound_moiety="LexA" regulatory complement(4476193..4476201) /regulatory_class="minus_10_signal" /gene="uvrA" /locus_tag="STM4254" /note="putative -10_signal for uvrA; RegulonDB:STMLTH004659" gene 4476202..4476832 /gene="ssb" /locus_tag="STM4256" /db_xref="GeneID:1255782" regulatory 4476202..4476210 /regulatory_class="minus_35_signal" /gene="ssb" /locus_tag="STM4256" /note="putative -35_signal for ssb; RegulonDB:STMLTH004660" regulatory complement(4476209..4476217) /regulatory_class="minus_35_signal" /gene="uvrA" /locus_tag="STM4254" /note="putative -35_signal for uvrA; RegulonDB:STMLTH004659" regulatory 4476229..4476237 /regulatory_class="minus_10_signal" /gene="ssb" /locus_tag="STM4256" /note="putative -10_signal for ssb; RegulonDB:STMLTH004660" regulatory 4476288..4476293 /regulatory_class="ribosome_binding_site" /gene="ssb" /locus_tag="STM4256" /note="putative RBS for ssb; RegulonDB:STMS1H004158" CDS 4476302..4476832 /gene="ssb" /locus_tag="STM4256" /note="controls activity of RecBCD nuclease; single-strand binding protein (SSB) (helix-destabilizing protein). (SW:SSB_SALTY)" /codon_start=1 /transl_table=11 /product="ssDNA-binding protein" /protein_id="NP_463121.1" /db_xref="GeneID:1255782" /translation="MASRGVNKVILVGNLGQDPEVRYMPSGGAVANLTLATSESWRDK QTGEMKEQTEWHRVVMFGKLAEVAGEYLRKGSQVYIEGQLRTRKWTDQSGQERYTTEI NVPQIGGVMQMLGGRQGGGAPAGGQQQGGWGQPQQPQQPQGGNQFSGGAQSRPQQSAP APSNEPPMDFDDDIPF" misc_feature 4476302..4476829 /gene="ssb" /locus_tag="STM4256" /note="single-stranded DNA-binding protein; Provisional; Region: PRK09010" /db_xref="CDD:236362" misc_feature order(4476326..4476337,4476410..4476418,4476461..4476463, 4476467..4476469,4476530..4476532,4476557..4476559, 4476590..4476592,4476599..4476601) /gene="ssb" /locus_tag="STM4256" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:239942" misc_feature order(4476341..4476349,4476365..4476367,4476395..4476397, 4476416..4476421,4476455..4476460,4476464..4476466, 4476470..4476472,4476476..4476478,4476482..4476484, 4476521..4476526,4476548..4476550,4476554..4476556, 4476560..4476565,4476602..4476604,4476608..4476610) /gene="ssb" /locus_tag="STM4256" /note="ssDNA binding site [nucleotide binding]; other site" /db_xref="CDD:239942" misc_feature order(4476530..4476532,4476536..4476538,4476542..4476544, 4476623..4476625) /gene="ssb" /locus_tag="STM4256" /note="tetramer (dimer of dimers) interface [polypeptide binding]; other site" /db_xref="CDD:239942" gene 4477865..4478505 /locus_tag="STM4257" /db_xref="GeneID:1255783" regulatory 4477865..4477870 /regulatory_class="ribosome_binding_site" /locus_tag="STM4257" /note="putative RBS for STM4257; RegulonDB:STMS1H004159" CDS 4477873..4478505 /locus_tag="STM4257" /note="hypothetical protein spi4_A (gi|7467268)" /codon_start=1 /transl_table=11 /product="putative inner membrane or exported" /protein_id="NP_463122.1" /db_xref="GeneID:1255783" /translation="MEDESNPWPSFVDTFSTVLCIFIFLMLVFALNNMIIMYDNSIKV YKANIENKTKSTAQNSGANDDSNPNEIVNKEVNTQDVSDGMTTMSGKEVGVYDIADGQ KTDITSTKNELVITYHGRLRSFSEEDTYKIKAWLEDKINSNLLIEMVIPQADISFSDS LRLGYERGIILMKEIKKIYPDVVIDMSVNSAASSTTSKAIITTINKKVSE" misc_feature 4477888..>4477965 /locus_tag="STM4257" /note="peptidoglycan -binding protein; Region: PRK09039" /db_xref="CDD:181619" gene 4478496..4479890 /locus_tag="STM4258" /db_xref="GeneID:1255784" regulatory 4478496..4478501 /regulatory_class="ribosome_binding_site" /locus_tag="STM4257" /note="putative RBS for STM4258; RegulonDB:STMS1H004160" CDS 4478502..4479890 /locus_tag="STM4258" /note="hypothetical protein spi4_A (gi|7467268)" /codon_start=1 /transl_table=11 /product="putative methyl-accepting chemotaxis protein" /protein_id="NP_463123.1" /db_xref="GeneID:1255784" /translation="MKYINHYRYLFVCFFLAILPFFALSFPGIREYVFDNFMVSAIYN GVIIAIYITGSLCALFTILKNISAKDILIAQDASRKNSILSNLNQVLFAGESKQCDFN LLMELDDNVSTARNQRLSFIMSCSNVSTLVGLLGTFAGLSITIGSIGNLLSSPSDVGG DNASNTLNMIVTMVASLSEPLKGMNTAFVSSIYGVVCAILLTSQSVFVRSSYSLVSTE IKKLKIISNRANNKQRSLRVESETLVEFKELFKAFFDNYLTVENLRTQDEEKKREMLS DSFVTLQNRLLDNSAKLEQISTLIDGYLVSSNENLKKLSDGVITITSRLSEGNILLAD NNARLEAMSTIQNIIDKKNDSIMTSVDKCYQESLSHGKTINDIAAGSADISHTLDGLR KEMDEDMNNVHLALSDLSATDKKIIANTKEISAEMVSYRDTYMPLMEKITSMHQEIVK QRLLNKEEKNED" misc_feature 4478760..4479107 /locus_tag="STM4258" /note="MotA/TolQ/ExbB proton channel family; Region: MotA_ExbB; pfam01618" /db_xref="CDD:460268" gene 4479873..4481199 /locus_tag="STM4259" /db_xref="GeneID:1255785" regulatory 4479873..4479878 /regulatory_class="ribosome_binding_site" /locus_tag="STM4259" /note="putative RBS for STM4259; RegulonDB:STMS1H004161" CDS 4479880..4481199 /locus_tag="STM4259" /note="ABC exporter outer membrane component homolog (gi|7467234)" /codon_start=1 /transl_table=11 /product="putative ABC exporter outer membrane component-like protein" /protein_id="NP_463124.1" /db_xref="GeneID:1255785" /translation="MKIKMFFLTTAFITQSTYASELPVIPLRDLVNAALTHQPSVAVS YYETEKKNSDLDLSRAALYPTLDLTSGLNNNRKESSGTERNVENKVSLSYRITDFGVR GANIRKSEYERDNSKTDYEKTKNIVSQEVVTTYYNISKYREMIDGVNLEKEFYKKMLE TFSLLVSSGVAMQSDMRKVQVSIDALNTRSIMYQSMLDDEMYKMQNMTGLNLSPVQIQ SDEKFNLFKKYIFVESPEKLMDMVMKYNDDYKMLVNTRKAATEDINAAKSSYFPTVDL VSSYVQNNPSGSAKKSDYEDEFKTGINVSFNIFNGFRNSAQERKMVASYSQAKLQIDD FLIKTRYNIDSQLSRYAAAKETYSVAERSHTNALQLTELYEQEFQLGQKSLLDLISSR NEAFQAYVSMIDSKYSLYILKLQQLSLIFHLMDYLKGNTESELNVMK" misc_feature 4479958..4481124 /locus_tag="STM4259" /note="Outer membrane protein TolC [Cell wall/membrane/envelope biogenesis]; Region: TolC; COG1538" /db_xref="CDD:441147" gene 4481196..4482473 /locus_tag="STM4260" /db_xref="GeneID:1255786" CDS 4481196..4482473 /locus_tag="STM4260" /note="predicted cation efflux pump; HLYD secretion protein (gi|7467244)" /codon_start=1 /transl_table=11 /product="membrane permease" /protein_id="NP_463125.1" /db_xref="GeneID:1255786" /translation="MNRRQSDHLMMIIISLTILIIILTYFIEINSVVHGQGVITTKDN AQLISLSKGGTIQDIYVAEGDTVKKGELLAKVVNLDLQKEYQRYRTQKGYLDKDVNEI SFILDKENESGLITLDGTRSLSNKEVKANIELVHSQIRAKELKKTSLDSEISGLQEKL SSKEKELALLAEEINILSPLVKKGISPYTNFLNKKQAYIKVKSEINDIESSITLKKDD IELVVNDIEALNNELRLSLSKIISKNLQELEVVNSTLKVIEKQINEEDIYSPVDGVIY KINKSATTHGGVIQAADLLFEIKPKVRTMLADVKILPKYRDQIYVDEAVKLDVQSIIQ PKIKSYNATIDNISPDSYEENTGGTIQRYYKVIIAFDVNEDDLRWLKPGMTVDASVIT GKHSIMEYLLSPLMKGVDKAFSEPVNTKRLDTP" misc_feature 4481268..4482443 /locus_tag="STM4260" /note="Cation efflux system protein CusB domain 1; Region: CusB_dom_1; cl46872" /db_xref="CDD:481212" gene 4482490..4499169 /locus_tag="STM4261" /db_xref="GeneID:1255787" CDS 4482490..4499169 /locus_tag="STM4261" /note="fusion of two hypothetical proteins; (gi|7467255) and (gi|7467255)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463126.1" /db_xref="GeneID:1255787" /translation="MGNKSIQKFFADQNSVIDLSSLGNAKGAKVSLSGPDMNITTPRG SVIIVNGALYSSIKGNNLAVKFKDKTITGAKILGSVDLKDIQLERIDSSLVDSAQVEK KGNGKRRNKKEEEELKKQLDDAENAKKEADKAKEEAEKAKEAAEKALNEAFEVQNSSK QIEEMLQNFLADNVAKDNLAQQSDASQQNTQAKATQASKQNDAEKVLPQPINKNTSTG KSNSSKNEENKLDAESVKEPLKVTLALAAESNSGSKDDSITNFTKPQFVGSTAPNATV IIKINGIAVGQAVADSLGNFTFTAPETLTDGTYNLEAEAKTADGSGSAKLVITIDSVT DKPTFELSPESSVSGHKGLTPTLTPSIVGTAEENAKVDIYVDNKLVASVDVDKDGNWS YEFKDNELSEGENSIKVVAVDKAGNKNETTDSIITDTIAPEKPTIELDDSSDSGIKND NITNSTLPTFIGVAEPGSTVSIYLGLKHLGEVIVAKDGTWSYTLTTPLKDGEYNITAT ATDIAGHTSATANLPFTIDTRISYFSAEIETTNDSGIVGDNVTNNTRPTFTGKTEPNA IISVINSETGEEVIFKANDKGEWTFNFTSDSVEGINNLTFTVEDVAGNKKDFSFSYVI DTIAPVPPTVSLEDYVVLPNGIILSGNDLPALVGTAEPKSTILLMRDGKLYDSIEVDS NGTWNYQFSNKFLQGAYDIEIISQDAAGNKSSTVKYSFTIQTEVVPPKAELDASDDSG AKGDWITNKHNALTLLGTADRFATVNILIDGKTIGVTTADADGNWNFDISRNLSDNVY KITVESIDPLGRTSSVDYQLTIDSFTPIPTVMLHDSADSGVKGDMITKINTPLFTGMA EANAKVSIYVDGVLSGEAIAGDDGVWNFQFTTALSDGSHDVTVKVEDIAGNTASSSAY NFQIVTQTQKPTIELVNDTGVDNTDHIINEKNPALTGTAAPYSTVKLYIDGALIAEVR TNKDGRWEYTLKADQGLVDGDHRITASVEDIAGNIAHSDPFLISVDTAISIPIVSLSP DSDSGISDDNLTNIVKPTLHLKDIDPDIISVQVWDAMSDTQIGVATQQPDGSWAYTFT SDLTEGLHQVYVKVEDIAGNKANSAIFDFTIDTTVSTPVISLLSKDDTGVTGDNLTNI NKPGFAISGVDADAHRVVVQVMHNGVSEEIELSHLNGSWLFIPGNTWADGSYTLTVKV EDKAGNTNYSAPLTVVIDTQIAIDGVELVNDSGVKGDNMTNDDRPHFRVTVPTDVNEV RLSIDGGNSWVQATPGVAGSWEYIWPTDLADGQYTLTVEATDKAGNTVTKTIDFAVDT TLSVPVIVLDSADDTGIQGDNMTNSTQPTFALQHIDDDAVRVTVSVEHGGVTTTFDAT KGTGGWTFTPPTSWADGDYTLSVSVEDKAGNTSHSASLTVTVDTQIAINNIELVNDSG IPDDNLTNNVRPHFQVTVPTDVNVVRLSIDGGKTWFNATQSATPGVWDYIWPDDVADG GYTLTVEATDEAGNKATQTLDFTIDTTLSVPTLSLDSADDSGIAGDNITNVKTPGFTL NNIDTDVSRVIVEVMHNGIKQEVPLVQTGGQWRFAPTSDWADGDYILTVKVEDRAGNV KQSAPLTVTVDTHIAIDRIELVNDSGIPGDNLTNEARPHFQVTVPADVNGVRLSIDGG KTWFDATQSATSGVWDYTWLTNVANGPHTLMVEASDKAGNKTTQKLDFTIDTILSEPT ITLDSADDSAAGDNITNVKMPGFTLGNIDADVTKVVVTVAHDGKNQQIELIKNGGVWR FTPGAAWTDGDYTLTVKVEDKAGNTNYSAPLTVTIDTQTSIDRIELLNDTGIVGDNLT NEARPQFHITVPTDVNSVQLSLDGGINWVNATLTSDGVWEYIWPTDLVENTYTLTVKA TDVAGNTATETLNFIIDTTLSTPTITLDSADDSGTANDNKTNVKTPGFIIGGIDSDVT QVVVQVMRDGHSEEVELTQTNGQWRFVPGSAWTDGDYTLTVTVKDEAGNIRHSAPLTV TIDTQITIDHIELVNDSGIPDDNLTNNVRPHFQVTVPTDVNVVRLSIDGGKTWFNATQ SATPGVWDYTWLADVGEGKHTLTVEATDKAGNKTTQQLDFIIDTLLSEPTIVLDSTDD SGTKGDHLTNVNKPTFLLGNIDADARYVTVEVQHGGTKEVLTATKDATGNWSVTPTGT WADGDYTLTVRVEDEAGNEKHSASLTVTVDTQITIDVIELVNDNGIPGDNMTNDAHPQ FRVTVPGDVNEVSLSIDGGVTWVKATQSATPGVWNYTWPGTVPDGDYTLNVKATDNAG NTVTETLHFTIDTTLSTPVIVLDSADDSGVHGDNMTNHTQPTFALQHIDDDAVRVTVS VEHGGVTTTFDATKDAGGWTFTPTGAWADGDYTLSVSVEDKAGNTSHSASLTVTVDTQ IAINNIELVNDSGIPDDNLTNNVRPHFQVTVPTDVNVVRLSIDGGKTWFNATQSATPG VWDYTWLADVGEGKHTLTVEATDKAGNKTTQQLDFIIDTLLSEPTIVLDNTDDSGTKG DNLTNVNKPTFLLGNIDADARYVTVEVQHGGTKEVLTATKGATGIWSVTPTGTWADGD YTLTVRVEDDAGNVKYSAPLTVTVDTQITIDVIELVNDNGIPGDNLTNDVRPHFRVTV PGDVNEVRLSIDGGNTWVRATQGTAGIWDYTWPKDVTDGLHTLTVEATDKAGNKTTQT LDFTIDTRLSTPTIAMDSRDDTGAIGDHITSVKRPGFTIGNIDADAHSVILRITQGGN SQEVTLTQVGGQWRFTPDADWADGSYTLTVEVTDNAGNVRQSTPLVVTVDTQTSITDI TLVNDHGVPDDNLTNSTRPQFEITVPADVNSVQLSIDGGANWVSATQGIEGVWGYTWP TDMGDGKHTLTVMVTDRAGNTATQTLEFFIDTRLSTPTIALDSTDDTGTPGDDMTNRT RPTFILQNIDSDVINVTVSVTHNGTTTSFTATQGAGGWSFTPPAPWGDGDYTLTVTVE DRAGNTRPSTPLTVTVDTQIAIDRIELVNDSGVPGDNVTKHVRPQFQISVPDDVEKVL LSIDGGTTWVTAIKSSTAGIWDYTWPTDMPEGQHTLTVEVTDGAGNKMTETLNFTIDI TLLTPTIELAPDQDTGQNKNDNLTSVTQPVFVLGSIDKDVRHVELSIEHNGTFKTVVL TESADGWRYRPDSALADGSYTFTVTVTDVAGNQQTSAPLKVTIDGTLTTPVIELAAGE DSGTVGDRLTNHDRPVFDIHQVDSDVTRVMVKVTYNGKTHEEAAVFTNGQWRFTPSAS WADGSYQLAVVVEDLAGNVKESAPFEVRIDTTTTINNIVLLNDTGVQNDQLTNVAKPS FRIDVPGDVVQVRVTLDGGANWNVIRKNADGQWIFDSPNTLVDGTYTLRVEATDEAGN IANKDLVFNIDTNIQVPTIALDAGQDTGANTADNITNISRPTFTIGNVDPDVIKVVVT IDGHDYNATKVGAGWQFTPGNAIPDGSYNITVTVEDKAGNTATSKPLPVVIDTTAEIE SVTLVTDSGDSDVDNITKVDKPQFSIVTADDITHVRVKIDNAANWIELTKGGDGRWIF NVGSALPDGQHTLLVDVTDIAGNVAQETLQFTIDTTLREPTIVLDPTHDTGDDTNDNL TRINKPVFIIGNVDNDVSHIVVHIDGRDYTIENTGGNLTFTPDQPLSDGQHTISVTVT DIAGNTKTSAELRIEIDTQVQIDSVTLTTDSGVNDHDNVTNATRPSFEIATPDDVTSV LVSFDGVNWTPISKNAAGQWEFTAGSALPDGHYTLHVQATDRAGNTANSTLGFTVDTQ IDGLSVVMLDDAGKDSTDGITNITSPRFEISAREPLQSVTVILNGKSSTLTQGAGNKW LFTPDTPLVDGTYKIEIVAEDIAGNKISKEVSFTIDTIVSDPSIDLLDADDTGESAVD NITSVTTPRFVIGNVPADIDTVVIRINGVSYPVTANGNNLWEFQVPVALNDGVYEAVV VFRDIAGNTSETKLPFTIDTTTSVSVRMEPASDTGNSNSDNLTNKQNPKFEGTAEPNA KLVITIVDDKSGREVLKQTITVGADGNWSVTPNILPDGMYTINVVATDVAGNTAQTQE RFTIDTVTIDPTIRLSDPSIDDQHEATSLRPEFKGFAEAFSTIMIQWDGKVVGSANAN ANGEWSWTPPSVLAPGSYVVSIVAKDKAGNESSQVDFPVVIPVIDVTPPTIKLSEESD SGALGDFTTNNKTPTLIGSTLPNTIVSIYVDGVKVGEATADTAGRYTFQLSEMKDGHY VVQVGIVNPRDNSELRSTAVDVTIDTEVAELVWNISGMHEGGYINTVTPEIGGTSEPN SKITIFVNGVEKAIAYTTGAGHWGVVLPALGNDGNYELTFKVEDVAGNIREFGPQNVI LDTVISPLTVVLREADDSGKVGDWITNKSHVTIDGTAEAGSTLTIRNPQGVVIATLVV GNDGRWSAELDLREGSNAFVVVSEDKAGNSQQKEILIEHDTQIEISDISLSRDTNSGD KYDLITNNKSPVLVAMTDPGATVQVYINGVLQGTVEASSSGNISYTMPANSADGEYQV QFVATDTAGNRVESAITTVTIDSQIAVFDIDEDSLPALSNNRALSVSGVGEAGSQVSI FVDGKLVNVVMVEADGTWRAPILLQDDGTFNIHFSITDVAGNTEVSKDYSVDVDSSTD FPTLNLEDASNSGSLDDLITNHNKPVLVGTAEAGATIHIYVDEKIVANVLVLEDGTWS YQFDNALKDGEYSIRVVAEDPAGNTAESPRLLVTIDTSTFIDNPAMVAGSDNGIFSND SITSQTRPTFSIFGEMNQSVQIFIDGVLVDTITVTDRNQVYRPESPLGDGSHSIYYVI TDKAGNTATSKTLNFTIDTFNTTPVAIDSIGGQTLAEMTGSDGKIYITDTTRNLLFSG SAEPNSKIEIIINGLNVGEVWVNEKGHWQMPVNPLYFTEGQLDITVKSTDRAGNVNQE KYSIWVDTHIKVFTSELDDNKSSSKTEWWSNSDLITMRGTGEIGATVSLIVAGVTLAT AVVAATGRWELSTDKLPEGTYDISLVIEDSAGNRWEDVREIFIDRTPPNAPVVTYSDI VNDLIIMQGTAEAKSQLIITDSEGNTYTLTVPDNGKWSMAIPYPSEGKFTITSVDAIG NRSDDVPLDIMKEVPVISLSPDSDSGTVGDNITRDKQPTFIIGNLESDVVVVQVDING TVYNAEKNADGVWFFTPGTPLADGSYTISVIASDAAGNQKNSLPITVTIDSTLTVPEI ALAAGEDNGASDSDNVTNHTQPKFTLQHIDADVTGVTVNVTHNGVTDIYQATQGADGW TFTPPAAWNDGNYTLSVTVVDRAGNSQQSASLAVTVDSTVTVTADSQHDDASDDATAT AVTPPESETVNAESATHLRTEPSAAEESVVKVTAYSITLLNADSGDEIDRSISQTPSF EISVPENIVNVSIMFEGEEFTLPITNQKAIFEVPLSLEDGEYTMDVKFIDKDNDFLIK EKTFSVDHSSADIVNAMNVRGKTEDDINDSPSTSSVGHNNNGAIDVFAVNEVTLPVDN QEEHA" misc_feature 4483207..4483482 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4483495..4483776 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature <4483720..4485279 /locus_tag="STM4261" /note="Ig-like repeat protein Blp2; Region: Ig_like_BLP2; NF040520" /db_xref="CDD:468522" misc_feature 4485250..4485546 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4485550..4485852 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4485853..4486158 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4486159..4486449 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4486450..4486755 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4486765..4487049 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4487050..4487355 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4487365..4487649 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4487653..4487952 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4487962..4488243 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4488244..4488549 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4488550..4488843 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4488847..4489152 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4489153..4489446 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4489447..4489752 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4489762..4490046 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4490050..4490355 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4490356..4490646 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4490650..4490952 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4490962..4491243 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4491247..4491549 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4491550..4491840 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4491844..4492149 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4492153..4492458 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4492456..4492749 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4492753..4493046 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4493047..4493340 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4493341..4493637 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4493638..4493928 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4493932..4494216 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4494220..4494513 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4494511..4494819 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature <4494541..4495932 /locus_tag="STM4261" /note="Ig-like repeat protein Blp2; Region: Ig_like_BLP2; NF040520" /db_xref="CDD:468522" misc_feature <4495762..4497114 /locus_tag="STM4261" /note="Ig-like repeat protein Blp2; Region: Ig_like_BLP2; NF040520" /db_xref="CDD:468522" misc_feature <4497019..4498221 /locus_tag="STM4261" /note="Ig-like repeat protein Blp2; Region: Ig_like_BLP2; NF040520" /db_xref="CDD:468522" misc_feature 4497970..4498257 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" misc_feature 4498261..4498554 /locus_tag="STM4261" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" gene 4499202..4501275 /locus_tag="STM4262" /db_xref="GeneID:1255788" regulatory 4499202..4499207 /regulatory_class="ribosome_binding_site" /locus_tag="STM4262" /note="putative RBS for STM4262; RegulonDB:STMS1H004162" CDS 4499209..4501275 /locus_tag="STM4262" /note="contains an N-terminal double-glycine peptidase domain; leukotoxin expression protein B homolog (gi|7467272)" /codon_start=1 /transl_table=11 /product="putative ABC-type bacteriocin/lantibiotic exporter" /protein_id="NP_463127.1" /db_xref="GeneID:1255788" /translation="MDKKLEPYYLSAETALSIVSKKFNIKIDIKEDDINLRFKKYDRN NTDDSIQMKNFFLSLGLSLQDILFNNGEDLLNEPMPILLLTPEMKWMVCVSGGQKIKL VNARGELCYVEIEDEYLKELSAFSILPLNKVVDSIRVKNIIKNSLSMNKIFYTKYFFS SLFMAIFALTIPVFSNLFYDKLVPSASVSSLFGVAIIVAVFIVFEFILRTSKDIYQSI TARQDDVDIDIAFLEAVLYSKKKNGRSMSSAFVLWNEFQKIKPVLLNSIFQRIADIPI FIIFLIVIYVNLGLVVIVPITMFIVSIIISLVNHHYTNELMNKQKEGQKNRNIFISEV FLSIKMIHTLNNQGLLFDWVNTSNEQSYLNLKIRKLNLIYQSILGSMSSITQITIMVI AFFMVIKGDVTTGAIVSSVIVSGRISGIISNFSSTLISILSAEKTGKDLLSFFDEDQA EKTPALQSISKCNGDISIRGVSYQYDAQSPMIINRLSIDIPAGQRVAVVGECGAGKSS LLGMLSGYLSPTDGAILYDGYNLGHLSQNFFSQHLSVVTTHDVLFTGTIESNFALKPQ NDRGRVLKALQLANCGFILQHPMGLKFPVNFMAKNLSSGQQQQLLLARSLSSDASVFL WDEPTSNLDENTEKQIFDNLDEFIHGKTLIMVTHRRYLIKYFDRVLVMKGGKIIRDCS PDKLLM" misc_feature <4499680..4501269 /locus_tag="STM4262" /note="ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]; Region: SunT; COG2274" /db_xref="CDD:441875" gene complement(4501553..4501847) /gene="yjcB" /locus_tag="STM4263" /db_xref="GeneID:1255789" CDS complement(4501553..4501834) /gene="yjcB" /locus_tag="STM4263" /note="similar to E. coli orf, hypothetical protein (AAC77030.1); Blastp hit to AAC77030.1 (116 aa), 83% identity in aa 24 - 116" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463128.1" /db_xref="GeneID:1255789" /translation="MAAITTGVVLLRWQLLSAVLMFLASTLNIRFRKSDYIGLAVISS GLGVVSACWFATGLLGITMMDLAAIWHNIEAVMVETMSQTPPEWPMVLT" misc_feature complement(4501571..4501834) /gene="yjcB" /locus_tag="STM4263" /note="Family of unknown function; Region: YjcB; pfam15940" /db_xref="CDD:435031" regulatory complement(4501842..4501847) /regulatory_class="ribosome_binding_site" /gene="yjcB" /locus_tag="STM4263" /note="putative RBS for yjcB; RegulonDB:STMS1H004163" gene 4502379..4503998 /gene="yjcC" /locus_tag="STM4264" /db_xref="GeneID:1255790" regulatory 4502379..4502384 /regulatory_class="ribosome_binding_site" /gene="yjcC" /locus_tag="STM4264" /note="putative RBS for yjcC; RegulonDB:STMS1H004164" CDS 4502397..4503998 /gene="yjcC" /locus_tag="STM4264" /note="similar to E. coli orf, hypothetical protein (AAC77031.1); Blastp hit to AAC77031.1 (528 aa), 64% identity in aa 1 - 528" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase" /protein_id="NP_463129.1" /db_xref="GeneID:1255790" /translation="MSQSTRRKVLRFLGTIIVVLLPILLAIWFAHIRAVSETRNQLHS FAQLVLDKTERVILQADLARDAAEQYQGQACTPAHQQRMLNIIRGRLYINELIYAKGQ RFLCSTVMTPTSPYFIPRADYKRKPDIAIYYYRDTPFFNGYKMTYMQRGNYVAVINPL SYSEVMSDDPALAWGMYDTVTNTFFSLSEQAQADQLLPLVRRSEPVFQQGERFYTLVK SAKRPVAAIVSTSKQRFYQNLFHQLTLTLPLGIICSIIILFMWSRSRQAYYSPRRLLQ RAITRHQLCLHYQPIIDIRNGTCVGAEALLRWPGYHGPVMSPCEFIPLAEKEGMIEQI TDYVVEEVFNDLGGFLAAHPHLYVSINLAAADFLSSRLIVMIHEKTRQHSVLAQQIKV EVTERGFIDVPKMTPIIQAFRQAGYEVAIDDFGTGYSNLHNLYSLNIDLLKIDKSFVD TLTTNSASHLIVEHIIEMAQSLRLKIIAEGVETAEQVSWLLKRGVQYCQGWHFAKALP PQEFIAWLQQTPAPLTIRGQTPYRR" misc_feature 4502403..4503962 /gene="yjcC" /locus_tag="STM4264" /note="Redox-sensing c-di-GMP phosphodiesterase, contains CSS-motif and EAL domains [Signal transduction mechanisms]; Region: YjcC; COG4943" /db_xref="CDD:443970" gene complement(4503986..4504404) /gene="soxS" /locus_tag="STM4265" /db_xref="GeneID:1255791" CDS complement(4503986..4504309) /gene="soxS" /locus_tag="STM4265" /note="AraC/XylS family; regulatory protein SOXS. (SW:SOXS_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional activator of superoxide response regulon" /protein_id="NP_463130.1" /db_xref="GeneID:1255791" /translation="MSHQQIIQTLIEWIDEHIDQPLNIDVVAKKSGYSKWYLQRMFRT VTHQTLGEYIRQRRLLLAAVELRTTERPIFDIAMDLGYVSQQTFSRVFRREFDRTPSD YRHRL" misc_feature complement(4503989..4504309) /gene="soxS" /locus_tag="STM4265" /note="superoxide response transcriptional regulator SoxS; Region: PRK10219" /db_xref="CDD:182314" regulatory complement(4504315..4504320) /regulatory_class="ribosome_binding_site" /gene="soxS" /locus_tag="STM4265" /note="putative RBS for soxS; RegulonDB:STMS1H004165" gene 4504334..4504854 /gene="soxR" /locus_tag="STM4266" /db_xref="GeneID:1255792" regulatory 4504334..4504342 /regulatory_class="minus_35_signal" /gene="soxR" /locus_tag="STM4266" /note="putative -35_signal for soxR; RegulonDB:STMLTH004662" regulatory 4504358..4504366 /regulatory_class="minus_10_signal" /gene="soxR" /locus_tag="STM4266" /note="putative -10_signal for soxR; RegulonDB:STMLTH004662" protein_bind 4504366..4504386 /gene="soxR" /locus_tag="STM4266" /note="putative binding site for SoxR, RegulonDB: STMS1H000364" /bound_moiety="SoxR" regulatory complement(4504378..4504386) /regulatory_class="minus_10_signal" /gene="soxS" /locus_tag="STM4265" /note="putative -10_signal for soxS; RegulonDB:STMLTH004661" regulatory 4504381..4504386 /regulatory_class="ribosome_binding_site" /gene="soxR" /locus_tag="STM4266" /note="putative RBS for soxR; RegulonDB:STMS1H004166" protein_bind complement(4504389..4504411) /note="putative binding site for SoxR, RegulonDB: STMS1H000365" /bound_moiety="SoxR" CDS 4504396..4504854 /gene="soxR" /locus_tag="STM4266" /note="contains iron-sulfur center for redox-sensing (MerR family); redox-sensitive transcriptional activator SOXR. (SW:SOXR_SALTY)" /codon_start=1 /transl_table=11 /product="redox-sensing transcriptional activator SoxR" /protein_id="NP_463131.1" /db_xref="GeneID:1255792" /translation="MEKKSPRLKALLTPGEVAKRSGVAVSALHFYESKGLITSIRNSG NQRRYKRDVLRYVAIIKIAQRIGIPLATIGDAFGILPEGHTLSAKEWKQLSSQWREEL DRRIHTLVALRDELDGCIGCGCLSRSDCPLRNPGDRLGEHGTGARLLEDD" misc_feature 4504396..4504851 /gene="soxR" /locus_tag="STM4266" /note="redox-sensitive transcriptional activator SoxR; Region: PRK15002" /db_xref="CDD:184964" regulatory complement(4504396..4504404) /regulatory_class="minus_35_signal" /gene="soxS" /locus_tag="STM4265" /note="putative -35_signal for soxS; RegulonDB:STMLTH004661" gene 4505139..4505815 /locus_tag="STM4267" /db_xref="GeneID:1255793" regulatory 4505139..4505144 /regulatory_class="ribosome_binding_site" /locus_tag="STM4267" /note="putative RBS for STM4267; RegulonDB:STMS1H004167" CDS 4505147..4505815 /locus_tag="STM4267" /codon_start=1 /transl_table=11 /product="putative glutathione S-transferase" /protein_id="NP_463132.1" /db_xref="GeneID:1255793" /translation="MLTVHHLNQSRSQRILWALEELALPYQIVRYQREKTMLAPPALK KVHPLGKSPVIEDHGMVIAESGAILEYLQDTYDSIGRFKPADAQGKQHYRFWLHYAEG SLMPLLLMRLLFTSLGKPPVPLGLRTLGGVIGKGAQKAYLNPQLETHARFIDGHLANH PWFAGEQLSMADIQMSFPLFALLARGGIAHLDHINAWKARVEMRPAWQRAIQQGGPFT IPGG" misc_feature 4505147..4505797 /locus_tag="STM4267" /note="Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]; Region: GstA; COG0625" /db_xref="CDD:440390" gene 4506147..4507511 /gene="yjcD" /locus_tag="STM4268" /db_xref="GeneID:1255794" regulatory 4506147..4506152 /regulatory_class="ribosome_binding_site" /gene="yjcD" /locus_tag="STM4268" /note="putative RBS for yjcD; RegulonDB:STMS1H004168" CDS 4506162..4507511 /gene="yjcD" /locus_tag="STM4268" /note="similar to E. coli orf, hypothetical protein (AAC77034.1); Blastp hit to AAC77034.1 (449 aa), 97% identity in aa 1 - 449" /codon_start=1 /transl_table=11 /product="putative xanthine/uracil permease family" /protein_id="NP_463133.1" /db_xref="GeneID:1255794" /translation="MSTPSARTGGSLDAWFKISQRGSTVRQEVVAGLTTFLAMVYSVI VVPGMLGKAGFPPAAVFVATCLVAGVGSIVMGLWANLPLAIGCAISLTAFTAFSLVLG QHISVPVALGAVFLMGVLFTVISATGIRSWILRNLPQGVAHGTGIGIGLFLLLIAANG VGLVIKNPLDGLPVALGDFDTFPVIMSLVGLAVILGLEKLKVPGGILLTIIGISIVGL LFDPNVHFSGIFAMPSLSDENGNSLIGSLDIMGALNPVVLPSVLALVMTAVFDATGTI RAVAGQANLLDKDGQIIDGGKALTTDSLSSVFSGLVGAAPAAVYIESAAGTAAGGKTG LTAITVGVLFLLILFLSPLSYLVPVYATAPALMYVGLLMLSNVAKIDFADFVDAMAGL VTAVFIVLTCNIVTGIMIGFATLVVGRLVSGEWRKLNIGTVVIAVALVAFYAGGWAI" misc_feature 4506189..4507493 /gene="yjcD" /locus_tag="STM4268" /note="Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 (NCS2) family [Nucleotide transport and metabolism]; Region: NCS2; COG2252" /db_xref="CDD:441853" gene 4507651..4509307 /gene="yjcE" /locus_tag="STM4269" /db_xref="GeneID:1255795" regulatory 4507651..4507656 /regulatory_class="ribosome_binding_site" /gene="yjcE" /locus_tag="STM4269" /note="putative RBS for yjcE; RegulonDB:STMS1H004169" CDS 4507661..4509307 /gene="yjcE" /locus_tag="STM4269" /note="similar to E. coli orf, hypothetical protein (AAC77035.1); Blastp hit to AAC77035.1 (549 aa), 95% identity in aa 1 - 549" /codon_start=1 /transl_table=11 /product="putative CPA1 family Na:H transport protein" /protein_id="NP_463134.1" /db_xref="GeneID:1255795" /translation="MEIFFTILIMTLVVSLSGVFTRVLPFQLPLPLMQIAVGALLAWP TFGLHVEFDPELFLVLFIPPLLFADGWKTPTREFLEHGREIFGLALALVLVTVVGIGF LIYWLVPGIPLIPAFALAAVLSPTDAVALSGIVGEGRIPKKIMGILQGEALMNDASGL VSLKFAVAVAMGTMVFTVGGATLEFFKVAIGGILAGFVVSWLYGRSLRFLSRWGGDEP ATQIVLLFLLPFASYLIAEHIGVSGILAAVAAGMTITRSGVMRRAPLAMRLRANSTWA MLEFVFNGMVFLLLGLQLPGILESSLAAAEADPNVETWMLFTDIVLIYAALMLVRFGW LWTMKKFSLRFLKKKPMEFASWTSREILIASFAGVRGAITLAGVLSIPLLLPDGSGFP ARYELVFLAAGVILFSLFVGVIMLPLLLQHLEVADHAQQLKEERIARAATAEVAIVAI QKMEERLAADTEENIDNQLLTEVSSRVIGNLRRRADGRNDVESSIQEENLERRFRLAA LRSERAELYHLRATREISNETLQKLLHDLDLMEALLIENQ" misc_feature 4507679..4509298 /gene="yjcE" /locus_tag="STM4269" /note="Na+/H+ antiporter, bacterial form; Region: a_cpa1; TIGR00831" /db_xref="CDD:129911" gene complement(4509402..4510296) /locus_tag="STM4270" /db_xref="GeneID:1255796" CDS complement(4509402..4510289) /locus_tag="STM4270" /note="similar to E. coli activator, hydrogen peroxide-inducible genes (AAC76943.1); Blastp hit to AAC76943.1 (305 aa), 28% identity in aa 1 - 275" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_463135.1" /db_xref="GeneID:1255796" /translation="MDIRTLRYFVEVVRQQSFTRAAEKLFVTQPTISKMLKNLEDELN CTLLIRDGRKLLLTDTGRVVFERGLAILAEFRQLEAELSDINHLNKGVLRLGIPPMVG MLMAGPISLFRQRYPGVELKISEFGGLTVQQAVMNGELDVAMTALPVEEASGLTTLSL FSHPLCVLVPRSGQWTTGDSIAPEALAEHPLLIYNEDFALSRQLMTLFSQHDVKPRIA VRSGQWDFLAAMVQAGVGIAILPEPICQRLDKATLRWLPLESDLRWQLGMIWREGVYL SHSARAWLTCCEGFWLKQP" misc_feature complement(4510104..4510283) /locus_tag="STM4270" /note="Bacterial regulatory helix-turn-helix protein, lysR family; Region: HTH_1; pfam00126" /db_xref="CDD:459683" misc_feature complement(4509429..4510016) /locus_tag="STM4270" /note="The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold; Region: PBP2_CidR; cd08438" /db_xref="CDD:176129" misc_feature complement(order(4509591..4509596,4509600..4509605, 4509621..4509638,4509915..4509935,4509939..4509941, 4509951..4509953,4509960..4509965,4509969..4509974)) /locus_tag="STM4270" /note="putative dimerization interface [polypeptide binding]; other site" /db_xref="CDD:176129" regulatory complement(4510291..4510296) /regulatory_class="ribosome_binding_site" /locus_tag="STM4270" /note="putative RBS for STM4270; RegulonDB:STMS1H004170" gene 4510386..4510803 /locus_tag="STM4271" /db_xref="GeneID:1255797" regulatory 4510386..4510391 /regulatory_class="ribosome_binding_site" /locus_tag="STM4271" /note="putative RBS for STM4271; RegulonDB:STMS1H004171" CDS 4510393..4510803 /locus_tag="STM4271" /note="similar to E. coli orf, hypothetical protein (AAC75202.1); Blastp hit to AAC75202.1 (132 aa), 33% identity in aa 13 - 113" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463136.1" /db_xref="GeneID:1255797" /translation="MAVAISRVTPAVVQRLQVPVQVLLYAGLFIFSQYLVSWLHLPLP ANLVGMVLMLALIVCRIIPLSWVRAGARWLLAEMLLFFVPAVVAVVNYAHLLLVDGWR IFSVIAISTLMVLGATAWVVDKVYRYEMSRLNRE" misc_feature 4510450..4510800 /locus_tag="STM4271" /note="Putative effector of murein hydrolase LrgA, UPF0299 family [General function prediction only]; Region: YohJ; COG1380" /db_xref="CDD:440990" gene 4510790..4511485 /locus_tag="STM4272" /db_xref="GeneID:1255798" regulatory 4510790..4510795 /regulatory_class="ribosome_binding_site" /locus_tag="STM4271" /note="putative RBS for STM4272; RegulonDB:STMS1H004172" CDS 4510796..4511485 /locus_tag="STM4272" /note="similar to E. coli putative seritonin transporter (AAC75203.1); Blastp hit to AAC75203.1 (231 aa), 36% identity in aa 9 - 222" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463137.1" /db_xref="GeneID:1255798" /translation="MNNVQLSVLCLVITLGIYFANKRLYRRFRKLPLMPLVLTPALLV LMLVFGHISWQNYIGESHWLLWLLGPATIAFAVPVYDNLAIIKRHWMSLTAGVVTATV VAVTSSVWLARLFTLSDEIQRSLAVRSVTTPFALAAAEPLGGQPDLVALFVVVTGVFG MAVGDALFLRLSIREGMAKGAGFGAASHGAGTARSYELGQQEGVVASLVMMLSGVVMV LAAPLVARVMF" misc_feature 4510796..4511482 /locus_tag="STM4272" /note="Putative effector of murein hydrolase [Cell wall/membrane/envelope biogenesis]; Region: LrgB; COG1346" /db_xref="CDD:440957" gene complement(4511524..4513187) /gene="yjcG" /locus_tag="STM4273" /db_xref="GeneID:1255799" CDS complement(4511524..4513173) /gene="yjcG" /locus_tag="STM4273" /note="similar to E. coli putative transport protein (AAC77037.1); Blastp hit to AAC77037.1 (549 aa), 96% identity in aa 1 - 549" /codon_start=1 /transl_table=11 /product="putative SSS family transport protein" /protein_id="NP_463138.1" /db_xref="GeneID:1255799" /translation="MKRVLTALAAALPFAAHAADAISGAVERQPTNWQAIIMFLIFVV FTLGITYWASKRVRSRSDYYTAGGNITGFQNGLAIAGDYMSAASFLGISALVFTSGYD GLIYSLGFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQGPIRILSACGSLVVVAL YLIAQMVGAGKLIELLFGLNYHIAVVLVGVLMMMYVLFGGMLATTWVQIIKAVLLLFG ASFMAFMVMKHVGFSFNNLFTEAMAVHPKGTAIMSPGGLVQDPISALSLGLGLMFGTA GLPHILMRFFTVSDAREARKSVFYATGFMGYFYILTFIIGFGAIMLVGANPAYKDAAG ALIGGNNMAAVHLANAVGGNLFLGFISAVAFATILAVVAGLTLAGASAVSHDLYANVF RKGATEREELKVSKITVLVLGVIAIILGVLFENQNIAFMVGLAFAIAASCNFPIILLS MYWSKLTTRGAMLGGWLGLLTAVVLMILGPTIWVQILGHEKAIFPYEYPALFSISVAF LGIWFFSATDNSAEGNREREQFRAQFIRSQTGFGVQQGRAH" misc_feature complement(4511527..4513173) /gene="yjcG" /locus_tag="STM4273" /note="cation/acetate symporter ActP; Region: actP; PRK09395" /db_xref="CDD:236495" misc_feature complement(order(4512061..4512066,4512073..4512075, 4512922..4512924,4512931..4512933)) /gene="yjcG" /locus_tag="STM4273" /note="Na binding site [ion binding]; other site" /db_xref="CDD:271374" gene complement(4513170..4513499) /gene="yjcH" /locus_tag="STM4274" /db_xref="GeneID:1255800" CDS complement(4513170..4513484) /gene="yjcH" /locus_tag="STM4274" /note="similar to E. coli orf, hypothetical protein (AAC77038.1); Blastp hit to AAC77038.1 (104 aa), 89% identity in aa 1 - 102" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463139.1" /db_xref="GeneID:1255800" /translation="MNDQIYQRIEDSARFRELVEKRQRFATILSVIMLAVYISFILLI AFAPGWLGTPLHAGTSVTRGIPIGVGVIVISFVLTGIYIWRANGEFDRLNNAVLHEVK VL" misc_feature complement(4513179..4513481) /gene="yjcH" /locus_tag="STM4274" /note="Uncharacterized membrane protein, DUF485 family [Function unknown]; Region: YjcH; COG3162" /db_xref="CDD:442396" regulatory complement(4513182..4513187) /regulatory_class="ribosome_binding_site" /gene="yjcH" /locus_tag="STM4274" /note="putative RBS for yjcG; RegulonDB:STMS1H004173" regulatory complement(4513494..4513499) /regulatory_class="ribosome_binding_site" /gene="yjcH" /locus_tag="STM4274" /note="putative RBS for yjcH; RegulonDB:STMS1H004174" gene complement(4513730..4515703) /gene="acs" /locus_tag="STM4275" /db_xref="GeneID:1255801" CDS complement(4513730..4515688) /gene="acs" /locus_tag="STM4275" /EC_number="6.2.1.1" /note="similar to E. coli acetyl-CoA synthetase (AAC77039.1); Blastp hit to AAC77039.1 (652 aa), 95% identity in aa 1 - 652" /codon_start=1 /transl_table=11 /product="acetyl-CoA synthetase" /protein_id="NP_463140.1" /db_xref="GeneID:1255801" /translation="MSQTHKHAIPANIADRCLINPEQYETKYKQSINDPDTFWGEQGK ILDWITPYQKVKNTSFAPGNVSIKWYEDGTLNLAANCLDRHLQENGDRTAIIWEGDDT SQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHS VIFGGFSPEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVI VLKRTGSDIDWQEGRDLWWRDLIEKASPEHQPEAMNAEDPLFILYTSGSTGKPKGVLH TTGGYLVYAATTFKYVFDYHPGDIYWCTADVGWVTGHSYLLYGPLACGATTLMFEGVP NWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGTDRSSLRILGSVGEPINP EAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVD NEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDG YYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLN HGEEPSPELYAEVRNWVRKEIGPLATPDVLHWTDSLPKTRSGKIMRRILRKIAAGDTS NLGDTSTLADPGVVEKLLEEKQAIAMPS" misc_feature complement(4513742..4515673) /gene="acs" /locus_tag="STM4275" /note="acetyl-CoA synthetase; Provisional; Region: PRK00174" /db_xref="CDD:234677" misc_feature complement(order(4513919..4513924,4513937..4513939, 4514111..4514122,4514144..4514146,4514153..4514155, 4514189..4514191,4514441..4514458,4514522..4514533, 4514600..4514602,4514609..4514614,4514684..4514692, 4514756..4514761,4514774..4514776,4515101..4515103, 4515107..4515109,4515116..4515118,4515194..4515202)) /gene="acs" /locus_tag="STM4275" /note="active site" /db_xref="CDD:341270" misc_feature complement(order(4513922..4513924,4513937..4513939, 4514114..4514122,4514600..4514602,4514609..4514614, 4514684..4514692,4514756..4514758,4514774..4514776, 4515101..4515103,4515107..4515109,4515116..4515118, 4515194..4515202)) /gene="acs" /locus_tag="STM4275" /note="CoA binding site [chemical binding]; other site" /db_xref="CDD:341270" misc_feature complement(order(4514873..4514878,4514882..4514899, 4514906..4514908)) /gene="acs" /locus_tag="STM4275" /note="acyl-activating enzyme (AAE) consensus motif; other site" /db_xref="CDD:341270" misc_feature complement(order(4514111..4514113,4514144..4514146, 4514153..4514155,4514189..4514191,4514441..4514458, 4514522..4514533,4514756..4514761)) /gene="acs" /locus_tag="STM4275" /note="AMP binding site [chemical binding]; other site" /db_xref="CDD:341270" misc_feature complement(order(4514447..4514449,4514528..4514533, 4514756..4514761)) /gene="acs" /locus_tag="STM4275" /note="acetate binding site [chemical binding]; other site" /db_xref="CDD:341270" regulatory complement(4515698..4515703) /regulatory_class="ribosome_binding_site" /gene="acs" /locus_tag="STM4275" /note="putative RBS for acs; RegulonDB:STMS1H004175" gene 4515875..4516021 /locus_tag="STM4276" /db_xref="GeneID:1255802" CDS 4515875..4516021 /locus_tag="STM4276" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463141.1" /db_xref="GeneID:1255802" /translation="MKFFKKVIRVRKSEKRGSFVQVTNSKVVFYIHLQLIKDNILSVV ICYT" gene 4515928..4517556 /gene="nrfA" /locus_tag="STM4277" /db_xref="GeneID:1255803" regulatory 4515928..4515936 /regulatory_class="minus_35_signal" /locus_tag="STM4276" /note="putative -35_signal for nrfA; RegulonDB:STMLTH004663" regulatory 4515955..4515963 /regulatory_class="minus_10_signal" /locus_tag="STM4276" /note="putative -10_signal for nrfA; RegulonDB:STMLTH004663" protein_bind 4515968..4515988 /locus_tag="STM4276" /note="putative binding site for NarL, RegulonDB: STMS1H000316" /bound_moiety="NarL" protein_bind 4515976..4515998 /locus_tag="STM4276" /note="putative binding site for FNR, RegulonDB: STMS1H000153" /bound_moiety="FNR" protein_bind 4515992..4516012 /locus_tag="STM4276" /note="putative binding site for NarL, RegulonDB: STMS1H000314" /bound_moiety="NarL" protein_bind 4516052..4516072 /gene="nrfA" /locus_tag="STM4277" /note="putative binding site for NarL, RegulonDB: STMS1H000319" /bound_moiety="NarL" regulatory 4516105..4516110 /regulatory_class="ribosome_binding_site" /gene="nrfA" /locus_tag="STM4277" /note="putative RBS for nrfA; RegulonDB:STMS1H004176" CDS 4516120..4517556 /gene="nrfA" /locus_tag="STM4277" /note="similar to E. coli periplasmic cytochrome c(552): plays a role in nitrite reduction (AAC77040.1); Blastp hit to AAC77040.1 (478 aa), 89% identity in aa 1 - 478" /codon_start=1 /transl_table=11 /product="nitrite reductase periplasmic cytochrome c(552)" /protein_id="NP_463142.1" /db_xref="GeneID:1255803" /translation="MARKTLRARRFFSLIFPFFFITSVYAEQTPESAKTVTVEAKNEM FAPQHPDQYQSWKATSEQSAREDALAEDPRLVILWAGYPFSRDYNKPRGHAYAVTDVR ETLRTGAPKTAEDGPLPMACWSCKSPDVARLIQQEGEDGYFHGKWARGGPEIVNDLGC ADCHNTASDDFAQGKPALTLSRPYAERAMEAIGKPFDKAGRFDQQSMVCGQCHVEYYF DGKNKAVKFPWDEGMKVENMEQYYDTIAFSDWTNSLSKTPMLKAQHPEYETWSAGIHG KNNVTCIDCHMPKVQNAEGKLYTDHKIGNPFDNFAQTCANCHTQDKASLQKVVAERKQ AIHDLKIKVEDQLVHAHFEAKAAWDAGATDAEMKPILNDIRHAQWRWDLAIASHGIHM HAPEEGLRMLGSAMDKAADARTKLARLLATKGITHEIPLPDISTKEKAQKAIGLNMQQ INAEKQDFLKTVVPQWEDQARKNGLLSQ" misc_feature 4516129..4517553 /gene="nrfA" /locus_tag="STM4277" /note="ammonia-forming cytochrome c nitrite reductase; Region: nrfA; PRK11125" /db_xref="CDD:236854" gene 4517581..4518234 /gene="nrfB" /locus_tag="STM4278" /db_xref="GeneID:1255804" CDS 4517581..4518234 /gene="nrfB" /locus_tag="STM4278" /note="a penta-haeme cytochrome c; similar to E. coli formate-dependent nitrite reductase; a penta-haeme cytochrome c (AAC77041.1); Blastp hit to AAC77041.1 (190 aa), 88% identity in aa 1 - 190" /codon_start=1 /transl_table=11 /product="formate-dependent nitrite reductase" /protein_id="NP_463143.3" /db_xref="GeneID:1255804" /translation="MTAQALYPAYRSLVGLKAARHQALCNGVNMSVLRSLLTAGVLAS GLFWSLSGITATPTPQESDQRWTVTQQRNPDAACLDCHKPDTEGMHGKHTGAINPNNK LPITCTNCHGQPSLHHREGVKDVMRFNDPMYTVEQQNSVCMSCHLPEQLQKAFWPHDV HVTKVTCASCHSLHPQQDTMQTLSEKGRIKICVDCHSDQRTNPHFNPASVPLLKEQP" misc_feature 4517677..4518225 /gene="nrfB" /locus_tag="STM4278" /note="cytochrome c nitrite reductase pentaheme subunit; Provisional; Region: PRK11659" /db_xref="CDD:183264" gene 4518220..4518902 /gene="nrfC" /locus_tag="STM4279" /db_xref="GeneID:1255805" regulatory 4518220..4518225 /regulatory_class="ribosome_binding_site" /gene="nrfB" /locus_tag="STM4278" /note="putative RBS for nrfC; RegulonDB:STMS1H004177" CDS 4518231..4518902 /gene="nrfC" /locus_tag="STM4279" /note="Fe-S centers; similar to E. coli formate-dependent nitrite reductase; Fe-S centers (AAC77042.1); Blastp hit to AAC77042.1 (223 aa), 91% identity in aa 1 - 223" /codon_start=1 /transl_table=11 /product="putative formate-dependent nitrite reductase" /protein_id="NP_463144.1" /db_xref="GeneID:1255805" /translation="MSCTRRQFITRVGALAAVSGMAGRVVANTLNINGVRYGMVHDES LCIGCTACMDACREVNTVPEGVSRLTIIRSEPQGTFPDVKYRFFRHSCQHCDHAPCVD VCPTGASFRDAASGIVDVNPDLCVGCQYCIAACPYRVRFIHPVSKTADKCDFCRKTNL KAGKQPACVESCPTKALTFGNLDDPNSDISRLLRQKTTYRYKLALGTKPKVYRVPFNY GEVSQ" misc_feature 4518234..4518899 /gene="nrfC" /locus_tag="STM4279" /note="cytochrome c nitrite reductase, Fe-S protein; Region: cyt_nit_nrfC; TIGR03149" /db_xref="CDD:274451" gene 4518888..4519855 /gene="nrfD" /locus_tag="STM4280" /db_xref="GeneID:1255806" regulatory 4518888..4518893 /regulatory_class="ribosome_binding_site" /gene="nrfC" /locus_tag="STM4279" /note="putative RBS for nrfD; RegulonDB:STMS1H004178" CDS 4518899..4519855 /gene="nrfD" /locus_tag="STM4280" /note="similar to E. coli formate-dependent nitrate reductase complex; transmembrane protein (AAC77043.1); Blastp hit to AAC77043.1 (318 aa), 85% identity in aa 1 - 318" /codon_start=1 /transl_table=11 /product="putative formate dependent nitrate reductase" /protein_id="NP_463145.1" /db_xref="GeneID:1255806" /translation="MTSASAFHFASLVWDWPIAIYLFLIGISAGLVTLAILLRRFHPE AGGSDSTLLRTTLVLGPGAIILGLLILVFHLTRPWTFWKLMFHYSFTSVMSMGVMLFQ LYMVVLVLWLAKIFEKEVIALQQRWLPRSGIVQKVLTLIAPFHRALETLMLVLAVLLG AYTGFLLSALKSYPFLNNPILPALFLFSGISSGAAVALIAMALRHRSNPHSTEARFVH RIETPVVWLEIFLLAAFFIGLALGDDGKMRALAAALGGGFWSWWFWLGVVGLGLIIPL LLKPWANRSVTFHGVLAVCGASLTGVLLLRFFILYAGQLTVA" misc_feature 4518911..4519852 /gene="nrfD" /locus_tag="STM4280" /note="cytochrome c nitrite reductase, NrfD subunit; Region: cyt_nit_nrfD; TIGR03148" /db_xref="CDD:274450" gene 4519832..4522070 /gene="nrfE" /locus_tag="STM4281" /db_xref="GeneID:1255807" regulatory 4519832..4519837 /regulatory_class="ribosome_binding_site" /gene="nrfD" /locus_tag="STM4280" /note="putative RBS for nrfE; RegulonDB:STMS1H004179" CDS 4519848..4522070 /gene="nrfE" /locus_tag="STM4281" /note="involved in attachment of haem c to cytochrome c552; similar to E. coli formate-dependent nitrite reductase; possible assembly function (AAD13457.1); Blastp hit to AAD13457.1 (552 aa), 76% identity in aa 1 - 552" /codon_start=1 /transl_table=11 /product="formate-dependent nitrite reductase" /protein_id="NP_463146.1" /db_xref="GeneID:1255807" /translation="MHNLDIFLPEAGFLALLLSLGVNVLTPLATWCGMGQHWRGVMRL TTCGAWTAFTLLLLAFAILVSCFLTSDFSVVYVAQHSHSQLSWGLKLAAVWGGHEGSL LLWALLLSGWTALFAWRSRHESDALFPLTLSILSFIMASLLLFIVLWSDPFLRIFPPA MEGRDLNPMLQHLGLILHPPLLYLGYGGLMTAASVALASLLCGGFNATTAWVCWRWAL PGWCALTLGIILGSWWAYCELGWGGWWFWDPVENASLLPWLAASALLHSLYVSRQRGS FRHWSLLLAILTLILSLLGTLIVRSGILLSVHAFALDNVRAVPLFILFAALSLASLAL YGWRAREPYPATRLGGGKCETLILTTLLLFSAVLLIVLVGTLYPMIYGLMGWGRLSVG APYFNRVTLPFGLLMLVVIVLATIRSRKVSVRCQLPALLAHTGVFIFAAGIMVSSGSR HEISLNLSPGQQVVLAGYTFRFERLDLEAKGNYTSEKARITLWRNEKRIGSLQPERRF YAARRQQMMEPGIHWNLLHDWYAVMGEKTGPDRYAMRLYVQTGVRWIWGGGLLMVCGA LLSGWRGRKHPELLPDGAALIRPTSEKHGRPDKAFTPPSGKTMLLLALLIFLPFATHA QVVDTWTFANPQQQEKALSIASQLRCPQCQNQNLLESNAPVAVSMRHQVYSMVAEGKS EAEITAWMTDRYGDFVRYNPPLNEQTLLLWALPYLLLLLVGVVAWRVRKRQHAGEGEQ " misc_feature 4519860..4521572 /gene="nrfE" /locus_tag="STM4281" /note="heme lyase subunit NrfE; Provisional; Region: PRK10369" /db_xref="CDD:236675" misc_feature 4521705..4522046 /gene="nrfE" /locus_tag="STM4281" /note="cytochrome c nitrite reductase, accessory protein NrfF; Region: cyt_nit_nrfF; TIGR03147" /db_xref="CDD:274449" misc_feature order(4521795..4521797,4521804..4521806) /gene="nrfE" /locus_tag="STM4281" /note="putative catalytic site [active]" /db_xref="CDD:319866" gene 4522051..4522687 /gene="nrfG" /locus_tag="STM4282" /db_xref="GeneID:1255808" regulatory 4522051..4522056 /regulatory_class="ribosome_binding_site" /gene="nrfG" /locus_tag="STM4282" /note="putative RBS for nrfG; RegulonDB:STMS1H004180" CDS 4522067..4522687 /gene="nrfG" /locus_tag="STM4282" /note="involved in attachment of haem c to cytochrome c552; similar to E. coli part of formate-dependent nitrite reductase complex (AAD13459.1); Blastp hit to AAD13459.1 (198 aa), 71% identity in aa 6 - 196" /codon_start=1 /transl_table=11 /product="component of formate-dependent nitrite reductase complex" /protein_id="NP_463147.1" /db_xref="GeneID:1255808" /translation="MSQSEHSTAPLRPMPVKRLAAAAVLMVAACVGGYLLTPKWQAVR SEQQRLADPLRDFTNPQTPEAQLSRLQEKIRANPQDSEQWARLGEYYLYRNAYDNALL AYRQALRLRGDNAQLFAALATVLYYQAGQHMTPATREMINKALALDATEVTAQMLLAA DAFMQADYAQAVSLWQTLLDANSPRVNRAQLVEAINLAKLLQNRQK" misc_feature 4522091..4522684 /gene="nrfG" /locus_tag="STM4282" /note="formate-dependent nitrite reductase complex subunit NrfG; Provisional; Region: PRK10370" /db_xref="CDD:182415" misc_feature 4522307..4522393 /gene="nrfG" /locus_tag="STM4282" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature order(4522310..4522312,4522319..4522324,4522331..4522336, 4522340..4522342,4522412..4522414,4522421..4522426, 4522436..4522441,4522445..4522450,4522523..4522525, 4522532..4522537,4522544..4522549,4522556..4522558) /gene="nrfG" /locus_tag="STM4282" /note="putative protein binding surface [polypeptide binding]; other site" /db_xref="CDD:276809" misc_feature 4522406..4522507 /gene="nrfG" /locus_tag="STM4282" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" misc_feature 4522520..4522606 /gene="nrfG" /locus_tag="STM4282" /note="TPR repeat [structural motif]; Region: TPR repeat" /db_xref="CDD:276809" gene 4523016..4524342 /gene="gltP" /locus_tag="STM4283" /db_xref="GeneID:1255809" regulatory 4523016..4523021 /regulatory_class="ribosome_binding_site" /gene="gltP" /locus_tag="STM4283" /note="putative RBS for gltP; RegulonDB:STMS1H004181" CDS 4523032..4524342 /gene="gltP" /locus_tag="STM4283" /note="similar to E. coli glutamate-aspartate symport protein (AAD13460.1); Blastp hit to AAD13460.1 (437 aa), 94% identity in aa 1 - 435" /codon_start=1 /transl_table=11 /product="DAACS family glutamate:aspartate symport protein" /protein_id="NP_463148.1" /db_xref="GeneID:1255809" /translation="MKNLKVSLAWQILLAMVLGILLGSYLHYHSDSREWLIANLLSPA GDIFIHLIKMIVVPIVISTLIVGIAGVGDAKQLGRIGAKTILYFELITTVAIILGITL ANVFQPGSGIDMSQLATVDISKYQNTTAEVQSHAHGLMGTILSLVPTNIIASMAKGDM LPIIFFSVLFGLGLSSLPATHREPLVTVFRSISETMFKVTHMVMRYAPVGVFALIAVT VANFGFASLWPLAKLVLLVHFAIIFFALVVLGIVARLCGLSIWILIRILKDELILAYS TASSESVLPRIIEKMEAYGAPASITSFVVPTGYSFNLDGSTLYQSIAAIFIAQLYGID LSLWQEIVLVLTLMVTSKGIAGVPGVSFVVLLATLGSVGIPLEGLAFIAGVDRILDMA RTALNVVGNALAVLVIAKWEHKFDRKKALAYERDVLGKFDKTAQ" misc_feature 4523032..4524339 /gene="gltP" /locus_tag="STM4283" /note="glutamate/aspartate:proton symporter; Provisional; Region: gltP; PRK11283" /db_xref="CDD:183075" gene complement(4524500..4525189) /gene="yjcO" /locus_tag="STM4284" /db_xref="GeneID:1255810" CDS complement(4524500..4525189) /gene="yjcO" /locus_tag="STM4284" /note="similar to E. coli orf, hypothetical protein (AAD13461.1); Blastp hit to AAD13461.1 (229 aa), 88% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="putative TPR repeat protein" /protein_id="NP_463149.1" /db_xref="GeneID:1255810" /translation="MKLLLALMLFMTFFAHAADPEPGSQYLQAAEAGDRRAQYFLADS WLSYGDLNKAEYWAQKAADSGDADACALLAQIKITNPVSLDYPDAKKLAEKAANAGSK AGEITLARILVNTQAGRPDYPKAISLLQKASEDLDNDSAVDAQMLLGLIYANGVGIAA DDEKAAWYFKRSSAISRTGYSEYWAGMMFLNGEPGFIEKNKQKALHWLNLSCLEGFDT GCEEFETLTNG" misc_feature complement(4524554..4525180) /gene="yjcO" /locus_tag="STM4284" /note="TPR repeat [General function prediction only]; Region: TPR; COG0790" /db_xref="CDD:440553" misc_feature complement(4524953..4525042) /gene="yjcO" /locus_tag="STM4284" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(4524848..4524937) /gene="yjcO" /locus_tag="STM4284" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" misc_feature complement(4524728..4524829) /gene="yjcO" /locus_tag="STM4284" /note="SLR repeat [structural motif]; Region: SLR repeat" /db_xref="CDD:276807" gene complement(4525366..4527520) /gene="fdhF" /locus_tag="STM4285" /db_xref="GeneID:1255811" CDS complement(4525366..4527513) /gene="fdhF" /locus_tag="STM4285" /EC_number="1.17.1.9" /note="similar to E. coli selenopolypeptide subunit of formate dehydrogenase H (AAD13462.1); Blastp hit to AAD13462.1 (715 aa), 97% identity in aa 1 - 714" /codon_start=1 /transl_except=(pos:complement(4527094..4527096),aa:Sec) /transl_table=11 /product="formate dehydrogenase" /protein_id="NP_463150.1" /db_xref="GeneID:1255811" /translation="MKKVVTVCPYCASGCKINLVVDNGKIVRAEAAQGKTNQGTLCLK GYYGWDFINDTQILTPRLKTPMIRRQRGGKLESVSWDEALNYVAERLSAIKAKYGPDA IQTTGSSRGTGNETNYVMQKFARAVIGTNNVDCCARVUHGPSVAGLHQSVGNGAMSNA INEIDNTDLVFVFGYNPADSHPIVANHVINAKRNGAKIIVCDPRKIETARIADMHIAL KNGSNIALLNAMGHVIIEENLYDKAFVASRTEGFEEYSKIVESYTPESVEEITGVSAQ EIRQAARMYASAKSAAILWGMGVTQFYQGVETVRSLTSLAMLTGNLGKPSAGVNPVRG QNNVQGACDMGALPDTYPGYQYVKFPENREKFAKAWGVESLPAHTGYRISELPHRAAH GEVRAAYIMGEDPLQTDAELSAVRKAFEDLELVIVQDIFMTKTASAADVILPSTSWGE HEGVFSAADRGFQRFFKAVEPKWDLKTDWQIISEIATRMGYPMHYNNTQEIWDELRHL CPDFYGATYEKMGELGYIQWPCRDTSDADQGTSYLFKEKFDTPNGLAQFFTCDWVAPI DKLTEEYPMVLSTVREVGHYSCRSMTGNCAALAALADEPGYAQINTADAARLGIEDEA LVWVHSRKGKIITRAQVSDRPNKGAIYMTYQWWIGACNELVTENLSPITKTPEYKYCA VRVEPIADQRAAEQYVIDEYNKLKTRLRESAMG" misc_feature complement(4525459..4527498) /gene="fdhF" /locus_tag="STM4285" /note="formate dehydrogenase, alpha subunit, archaeal-type; Region: Fdh-alpha; TIGR01591" /db_xref="CDD:130652" misc_feature complement(order(4527388..4527390,4527469..4527471, 4527475..4527477,4527481..4527486,4527490..4527492)) /gene="fdhF" /locus_tag="STM4285" /note="[4Fe-4S] binding site [ion binding]; other site" /db_xref="CDD:239154" misc_feature complement(order(4526080..4526082,4526176..4526181, 4526215..4526217,4526221..4526232,4526290..4526292, 4526302..4526304,4526308..4526310,4526509..4526514, 4526608..4526613,4526620..4526628,4526845..4526847, 4526851..4526853,4526902..4526904,4526908..4526913, 4526974..4526979,4526986..4526997,4527094..4527099, 4527184..4527186,4527382..4527384)) /gene="fdhF" /locus_tag="STM4285" /note="molybdopterin cofactor binding site; other site" /db_xref="CDD:239154" regulatory complement(4527515..4527520) /regulatory_class="ribosome_binding_site" /gene="fdhF" /locus_tag="STM4285" /note="putative RBS for fdhF; RegulonDB:STMS1H004182" gene complement(4527868..4528782) /gene="lpxO" /locus_tag="STM4286" /db_xref="GeneID:1255812" CDS complement(4527868..4528776) /gene="lpxO" /locus_tag="STM4286" /note="putative dioxygenase; LpxO (gi|9454389)" /codon_start=1 /transl_table=11 /product="putative dioxygenase for synthesis of lipid" /protein_id="NP_463151.1" /db_xref="GeneID:1255812" /translation="MFAAIIIGIFIISVIYAHSRGVEKQKLSRQLFDHSTFMAPINMF MTRFSTLPAKQPYFDTTAFPELQKLTENWQVIREEALQLQHHIKAAQANNDAGFNTFF KRGWKRFYLKWYSDAHPSAETLCPITTKLVNSIPSIKAAMFAELPPGAYLGKHRDPYA GSVRYHLGLSTPNDDRCFIEVDRQRHSWRDGKAVIFDETYVHWAENKTEQTRIILFCD IERPMKWRWAQSVNHWVGASLMSAASSPNDENDRTGAINRIFKYVHAARDAGQRLKKK NRTLYYALKYLVIAAIFAAIILFSLL" misc_feature complement(4527913..4528731) /gene="lpxO" /locus_tag="STM4286" /note="Aspartyl/Asparaginyl beta-hydroxylase; Region: Asp_Arg_Hydrox; cl42444" /db_xref="CDD:478204" regulatory complement(4528777..4528782) /regulatory_class="ribosome_binding_site" /gene="lpxO" /locus_tag="STM4286" /note="putative RBS for lpxO; RegulonDB:STMS1H004183" gene complement(4529034..4529512) /gene="phnO" /locus_tag="STM4287" /db_xref="GeneID:1255813" CDS complement(4529034..4529498) /gene="phnO" /locus_tag="STM4287" /note="similar to E. coli putative regulator, phn operon (AAC77054.1); Blastp hit to AAC77054.1 (144 aa), 77% identity in aa 1 - 144" /codon_start=1 /transl_table=11 /product="putative regulator in phn operon" /protein_id="NP_463152.3" /db_xref="GeneID:1255813" /translation="MILMRRREDVMPVCELRHATTEDTDSVYALICELLKNELDYQAF RDGFAANLLDPNVHYRLALRNGEVVGMISLHMQFHLHHANWIGEIQELVVLPPMRGQK IGSQLLAWAEEEARQAGAELTELSTNIKRRDAHRFYLREGYKQSHFRFTKAL" misc_feature complement(4529037..4529468) /gene="phnO" /locus_tag="STM4287" /note="aminoalkylphosphonate N-acetyltransferase; Region: PRK10146" /db_xref="CDD:182266" misc_feature complement(order(4529184..4529189,4529217..4529225)) /gene="phnO" /locus_tag="STM4287" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" regulatory complement(4529507..4529512) /regulatory_class="ribosome_binding_site" /gene="phnO" /locus_tag="STM4287" /note="putative RBS for phnO; RegulonDB:STMS1H004184" gene complement(4529620..4530075) /gene="phnB" /locus_tag="STM4288" /db_xref="GeneID:1255814" CDS complement(4529620..4530063) /gene="phnB" /locus_tag="STM4288" /note="similar to E. coli orf, hypothetical protein (AAC77068.1); Blastp hit to AAC77068.1 (147 aa), 83% identity in aa 1 - 145" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463153.1" /db_xref="GeneID:1255814" /translation="MPLSPYLSFAGNCADAIAYYQQTLGAELLYKLSFGEMPPSAADN EEGCPSGMRFPDTAIAHANMRIAGSDIMMSDASASGRAHYSGFTLVLDTQDVAEGKRW FDNLAAQGQIEMDWQETFWAQGFGKVSDRFGVPWMINVVKHQPAT" misc_feature complement(4529623..4530063) /gene="phnB" /locus_tag="STM4288" /note="VOC family metalloprotein YjdN; Region: PRK10148" /db_xref="CDD:236656" misc_feature complement(order(4529653..4529655,4529683..4529685, 4529770..4529772,4529782..4529784,4529788..4529805, 4529848..4529850,4529857..4529862,4529992..4529994, 4530040..4530057)) /gene="phnB" /locus_tag="STM4288" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:319899" regulatory complement(4530070..4530075) /regulatory_class="ribosome_binding_site" /gene="phnB" /locus_tag="STM4288" /note="putative RBS for phnB; RegulonDB:STMS1H004185" gene complement(4530183..4530530) /gene="phnA" /locus_tag="STM4289" /db_xref="GeneID:1255815" CDS complement(4530183..4530518) /gene="phnA" /locus_tag="STM4289" /note="similar to E. coli orf, hypothetical protein (AAC77069.1); Blastp hit to AAC77069.1 (111 aa), 96% identity in aa 1 - 111" /codon_start=1 /transl_table=11 /product="putative alkylphosphonate uptake protein in phosphonate metabolism" /protein_id="NP_463154.1" /db_xref="GeneID:1255815" /translation="MSLPHCPQCNSEYTYEDNGMFICPECAHEWNDAEPAQESDELIV KDANGNLLADGDSVTIVKDLKVKGSSSMLKIGTKVKNIRLVEGDHNIDCKIDGFGPMK LKSEFVKKN" misc_feature complement(4530186..4530518) /gene="phnA" /locus_tag="STM4289" /note="phnA family protein; Region: PRK10220" /db_xref="CDD:182315" regulatory complement(4530525..4530530) /regulatory_class="ribosome_binding_site" /gene="phnA" /locus_tag="STM4289" /note="putative RBS for phnA; RegulonDB:STMS1H004186" protein_bind 4530754..4530782 /note="putative binding site for CRP, RegulonDB: STMS1H000118" /bound_moiety="CRP" gene 4530938..4532488 /gene="proP" /locus_tag="STM4290" /db_xref="GeneID:1255816" regulatory 4530938..4530946 /regulatory_class="minus_35_signal" /gene="proP" /locus_tag="STM4290" /note="putative -35_signal for proP; RegulonDB:STMLTH004664" regulatory 4530966..4530974 /regulatory_class="minus_10_signal" /gene="proP" /locus_tag="STM4290" /note="putative -10_signal for proP; RegulonDB:STMLTH004664" regulatory 4530976..4530981 /regulatory_class="ribosome_binding_site" /gene="proP" /locus_tag="STM4290" /note="putative RBS for proP; RegulonDB:STMS1H004187" CDS 4530986..4532488 /gene="proP" /locus_tag="STM4290" /note="similar to E. coli low-affinity transport system; proline permease II (AAC77072.1); Blastp hit to AAC77072.1 (500 aa), 95% identity in aa 1 - 500" /codon_start=1 /transl_table=11 /product="MFS family low-affinity proline transporter" /protein_id="NP_463155.1" /db_xref="GeneID:1255816" /translation="MLKRKKIKPITLGDVTIIDDGKLRKAITAASLGNAMEWFDFGVY GFVAYALGKVFFPGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAIT IVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRK RGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEENFLEWGWRIPFFIALPLGIIGLYLR HALEETPAFQQHVDKLEQGDREGLQDGPKVSFKEIATKHWRSLLSCIGLVIATNVTYY MLLTYMPSYLSHNLHYSEDHGVLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVIMGSIA LFALAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPAMFPTHIRYSALAAA FNISVLIAGLTPTLAAWLVESSQDLMMPAYYLMVIAVIGLITGISMKETANRPLKGAT PAASDIQEAKEILGEHYDNIEQKIDDIDQEIAELQVKRSRLVQQHPRIDE" misc_feature 4531013..4532482 /gene="proP" /locus_tag="STM4290" /note="proline/glycine betaine transporter ProP; Region: PRK10642" /db_xref="CDD:182611" misc_feature order(4531094..4531099,4531106..4531111,4531118..4531120, 4531232..4531234,4531406..4531411,4531415..4531423, 4531430..4531432,4531490..4531492,4531499..4531504, 4531511..4531513,4531787..4531789,4531796..4531801, 4531808..4531816,4531823..4531825,4531907..4531909, 4531919..4531921,4532075..4532080,4532090..4532092, 4532102..4532104,4532150..4532152,4532159..4532164, 4532171..4532176,4532183..4532185) /gene="proP" /locus_tag="STM4290" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340924" gene complement(4532655..4533725) /gene="basS" /locus_tag="STM4291" /db_xref="GeneID:1255817" CDS complement(4532655..4533725) /gene="basS" /locus_tag="STM4291" /EC_number="2.7.3.-" /note="sensor protein BASS/PMRB. (SW:BASS_SALTY)" /codon_start=1 /transl_table=11 /product="sensory kinase in two-component regulatory system with BasR" /protein_id="NP_463156.1" /db_xref="GeneID:1255817" /translation="MRFQRRAMTLRQRLMLTIGLILLVFQLISTFWLWHESTEQIQLF EQALRDNRNNDRHIMHEIREAVASLIVPGVFMVSLTLLICYQAVRRITRPLAELQKEL EARTADNLAPIAIHSSTLEIESVVSAINQLVTRLTTTLDNERLFTADVAHELRTPLSG VRLHLELLSKTHNVDVAPLIARLDQMMDSVSQLLQLARVGQSFSSGNYQEVKLLEDVI LPSYDELNTMLETRQQTLLLPESAADVVVRGDATLLRMLLRNLVENAHRYSPEGTHIT IHISADPDAIMAVEDEGPGIDESKCGKLSEAFVRMDSRYGGIGLGLSIVSRITQLHQG QFFLQNRTERTGTRAWVLLKKA" misc_feature complement(4532658..4533704) /gene="basS" /locus_tag="STM4291" /note="two-component system sensor histidine kinase PmrB; Region: PRK10755" /db_xref="CDD:236751" gene complement(4533735..4534418) /gene="basR" /locus_tag="STM4292" /db_xref="GeneID:1255818" CDS complement(4533735..4534403) /gene="basR" /locus_tag="STM4292" /note="OmpR family; transcriptional regulatory protein BASR/PMRA. (SW:BASR_SALTY)" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with BasS" /protein_id="NP_463157.1" /db_xref="GeneID:1255818" /translation="MKILIVEDDTLLLQGLILAAQTEGYACDGVSTARAAEHSLESGH YSLMVLDLGLPDEDGLHFLTRIRQKKYTLPVLILTARDTLNDRITGLDVGADDYLVKP FALEELHARIRALLRRHNNQGESELTVGNLTLNIGRHQAWRDGQELTLTPKEYALLSR LMLKAGSPVHREILYNDIYNWDNEPSTNTLEVHIHNLRDKVGKSRIRTVRGFGYMLVA TEES" misc_feature complement(4533738..4534403) /gene="basR" /locus_tag="STM4292" /note="two-component system response regulator PmrA; Region: PRK10643" /db_xref="CDD:182612" gene complement(4534400..4536057) /gene="yjdB" /locus_tag="STM4293" /db_xref="GeneID:1255819" CDS complement(4534400..4536043) /gene="yjdB" /locus_tag="STM4293" /note="hypothetical 61.6 Kda protein in basS/pmrA-adiY intergenic region. (SW:YJDB_SALTY)" /codon_start=1 /transl_table=11 /product="putative integral membrane protein" /protein_id="NP_463158.1" /db_xref="GeneID:1255819" /translation="MLKRFLKRPVLGQIAWLLLFSFYIAVCLNIAFYKQVLQDLPLNS LRNVLVFISMPVVAFSVVNSVLTLASFIWLNRLLACVFILVGAAAQYFILTYGIIIDR SMIANMMDTTPAETFALMTPQMVLTLGLSGVLAAVIAFWVKIRPATPRLRSGLYRLAS VLISILLVILVAAFFYKDYASLFRNNKQLIKALSPSNSIVASWSWYSHQRLANLPLVR IGEDAHRNPLMLKGDRKNLTILIVGETSRGDDFSLGGYPRDTNPRLAKDDVIYFPHTT SCGTATAISVPCMFSDMPRKHYDEELAHHQEGLLDIIQRAGINVLWNDNDGGCKGACD RVPHQNVTELNLPGQCIDGECYDEVLFHGLEDYIDHLKGDGVIVLHTIGSHGPTYYNR YPPQFKKFTPTCDTNEIQNCSQEQLINTYDNTVLYVDYIVDKAINLLKSHQDKFTTSL VYLSDHGESLGENGVYLHGLPYSIAPDTQKHVPMLIWLSKDYQQRYQVDQACLQKRAS TLDYSQDNLFSTMLGLTGVQTTYYQAADDILQPCRRLSE" misc_feature complement(4534406..4536040) /gene="yjdB" /locus_tag="STM4293" /note="putative metal dependent hydrolase; Provisional; Region: PRK11598" /db_xref="CDD:183224" regulatory complement(4534413..4534418) /regulatory_class="ribosome_binding_site" /gene="basR" /locus_tag="STM4292" /note="putative RBS for basR; RegulonDB:STMS1H004188" regulatory complement(4536052..4536057) /regulatory_class="ribosome_binding_site" /gene="yjdB" /locus_tag="STM4293" /note="putative RBS for yjdB; RegulonDB:STMS1H004189" gene complement(4536177..4537528) /gene="yjdE" /locus_tag="STM4294" /db_xref="GeneID:1255820" CDS complement(4536177..4537514) /gene="yjdE" /locus_tag="STM4294" /note="cryptic; similar to E. coli putative amino acid/amine transport protein, cryptic (AAC77076.1); Blastp hit to AAC77076.1 (445 aa), 94% identity in aa 1 - 445" /codon_start=1 /transl_table=11 /product="putative APC family putrescine/ornithine transport protein" /protein_id="NP_463159.1" /db_xref="GeneID:1255820" /translation="MSSDADAHKVGLIPVTLMVSGNIMGSGVFLLPANLAATGGIAIY GWLVTIIGALALSMVYAKMSSLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNI AMVVIGVGYLSYFFPILKDPLVLTLTCVAVLWIFVLLNIVGPKMITRVQAVATVLALV PIVGIAVFGWFWFKGETYMAAWNVSGMNTFGAIQSTLNVTLWSFIGVESASVAAGVVK NPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGA IVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVNKAGTPVAGLLIVGVLM TIFQFSSMSPNAAKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPLYLLITF VAFVYCIWAVIGSGAKEVMWSFVTLMVITALYALNYNRIHKNPYPLDAPVKQD" misc_feature complement(4536180..4537514) /gene="yjdE" /locus_tag="STM4294" /note="arginine/agmatine antiporter; Region: PRK10644" /db_xref="CDD:182613" regulatory complement(4537523..4537528) /regulatory_class="ribosome_binding_site" /gene="yjdE" /locus_tag="STM4294" /note="putative RBS for yjdE; RegulonDB:STMS1H004190" gene complement(4537654..4538428) /gene="adiY" /locus_tag="STM4295" /db_xref="GeneID:1255821" CDS complement(4537654..4538415) /gene="adiY" /locus_tag="STM4295" /note="AraC/XylS family; similar to E. coli putative ARAC-type regulatory protein (AAC77077.1); Blastp hit to AAC77077.1 (253 aa), 79% identity in aa 1 - 253" /codon_start=1 /transl_table=11 /product="transcriptional activator of adiA" /protein_id="NP_463160.1" /db_xref="GeneID:1255821" /translation="MRICSNEPCIVLLTEKDTWLRVNGKEPISLKANHMAILACENNV IDISSLNSVLVIQVSRNNIKDYLQFLNKDLSHLPVWQRNADPLLTANCLTPDIFRVAA RYSAMEAPDEIVSERTRALLFTVLSRFLDHKKFISLLMHMLRSRISDSVYHIIQSDIH KDWNLSAVASCLCLSPSLLKKKLKNENTSYSQIITTCRMRYAVNQLLMDGKNISQVSQ LCGYNSTSYFISVFKEFYGMTPLHYVSQHRERSAA" misc_feature complement(4537660..4538394) /gene="adiY" /locus_tag="STM4295" /note="DNA-binding transcriptional regulator GadX; Provisional; Region: PRK09978" /db_xref="CDD:137624" regulatory complement(4538423..4538428) /regulatory_class="ribosome_binding_site" /gene="adiY" /locus_tag="STM4295" /note="putative RBS for adiY; RegulonDB:STMS1H004191" gene complement(4538713..4540994) /gene="adi" /locus_tag="STM4296" /db_xref="GeneID:1255822" CDS complement(4538713..4540983) /gene="adi" /locus_tag="STM4296" /EC_number="4.1.1.19" /note="catabolic; inducible by acid; similar to E. coli biodegradative arginine decarboxylase (AAC77078.1); Blastp hit to AAC77078.1 (756 aa), 92% identity in aa 1 - 756" /codon_start=1 /transl_table=11 /product="arginine decarboxylase" /protein_id="NP_463161.1" /db_xref="GeneID:1255822" /translation="MMKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDD GYAILSANEAIDCLMFSYQMEQPDEHLSVRQLIGKLHERQQNVPVFLLGDREKATASL DRDLLELVDEFAWILEDTADFIAGRAVAAMTRYRQQLLPPLFNALMKYSDIHEYSWAA PGHQGGVGFTKTPSGRFYHDYYGENLFRSDMGIERTTLGSLLDHTGAFGESEKNAARV FGADRSWSVVVGTSGSNRTIMQACMTDNDVVVLDRNCHKSIEQGLILTGAKPVYMVPS RNRYGIIGPIYPQEMQPETLQKKISASPLTKTKAGQKPSYSVVTNCTYDGVCYNAKEA QDLLAKTSDRIHFDEAWYGYARFNPIYCDHYAMRGEPGDHNGPTVFATHSTHKLLNAL SQASYIHVREGRGAVNFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGLSLTQE VIDEAVDFRQAMARLYKEFTDEGDWFFKPWNKDVVTDPQTGKTYDFADAPAKLLATDQ NCWVMRPGETWHGFKDLPDNWSMLDPIKVSILAPGMGDDGELEASGVPAALVTAWLGR HGIVPTRTTDFQIMFLFSMGVTRGKWGTLINTLCSFKHHYDANTPLAQVMPELVQDYP DTYANMGIHDLGDKMFAWLRENNPGARLNAAYSTLPVAEITPRDAYNAIVNNNIEMVA IENLPGRIAANSVIPYPPGIPMLLSGENFGDENSPQVGYLRSLQSWDHHFPGFEHETE GTEIIDGVYHVMCVKA" misc_feature complement(4538716..4540980) /gene="adi" /locus_tag="STM4296" /note="arginine decarboxylase; Provisional; Region: PRK15029" /db_xref="CDD:184989" regulatory complement(4540989..4540994) /regulatory_class="ribosome_binding_site" /gene="adi" /locus_tag="STM4296" /note="putative RBS for adi; RegulonDB:STMS1H004192" gene complement(4541213..4542207) /gene="melR" /locus_tag="STM4297" /db_xref="GeneID:1255823" CDS complement(4541213..4542145) /gene="melR" /locus_tag="STM4297" /note="AraC/XylS family; similar to E. coli regulator of melibiose operon (AAC77079.1); Blastp hit to AAC77079.1 (302 aa), 88% identity in aa 4 - 302" /codon_start=1 /transl_table=11 /product="regulator of melibiose operon" /protein_id="NP_463162.1" /db_xref="GeneID:1255823" /translation="MSTQAISLLPPDPHMCNGDEKQTRSPLSLYSEYQRLDVELRPPH RMASSHWHGQVEVNVPFDGDVEYLINNEVVQIKQGHITLFWACTPHQLTRPGNCRQMA IFSLPMHLFLSWPLDRDLINHVTHGMVVKSLATQQLSTFEVLRWQQETSSPNEQIRQL AIDEIGLMLKRFSLSGWQPILLNKTSRTHKNSVSRHAQFYVSQMLGFIADNYDQALTI NDVAEHVKLNANYAMGIFQRVMQLTMKQYITAMRINHVRALLSDTDKTILDVALTAGF RSSSRFYSTFSKFVGMSPQQYRKLSQQRRQTMPG" misc_feature complement(4541216..4542121) /gene="melR" /locus_tag="STM4297" /note="transcriptional regulator MelR; Region: PRK10371" /db_xref="CDD:182416" protein_bind complement(4542096..4542236) /note="putative binding site for MelR, RegulonDB: STMS1H000280" /bound_moiety="MelR" protein_bind 4542097..4542237 /note="putative binding site for MelR, RegulonDB: STMS1H000282" /bound_moiety="MelR" regulatory complement(4542157..4542162) /regulatory_class="ribosome_binding_site" /gene="melR" /locus_tag="STM4297" /note="putative RBS for melR; RegulonDB:STMS1H004193" regulatory complement(4542180..4542188) /regulatory_class="minus_10_signal" /gene="melR" /locus_tag="STM4297" /note="putative -10_signal for melR; RegulonDB:STMLTH004665" protein_bind complement(4542196..4542216) /note="putative binding site for CRP, RegulonDB: STMS1H000083" /bound_moiety="CRP" regulatory complement(4542199..4542207) /regulatory_class="minus_35_signal" /gene="melR" /locus_tag="STM4297" /note="putative -35_signal for melR; RegulonDB:STMLTH004665" protein_bind complement(4542251..4542272) /note="putative binding site for MelR, RegulonDB: STMS1H000281" /bound_moiety="MelR" protein_bind 4542252..4542273 /note="putative binding site for MelR, RegulonDB: STMS1H000283" /bound_moiety="MelR" gene 4542282..4543769 /gene="melA" /locus_tag="STM4298" /db_xref="GeneID:1255824" regulatory 4542282..4542290 /regulatory_class="minus_35_signal" /gene="melA" /locus_tag="STM4298" /note="putative -35_signal for melA; RegulonDB:STMLTH004666" regulatory 4542309..4542317 /regulatory_class="minus_10_signal" /gene="melA" /locus_tag="STM4298" /note="putative -10_signal for melA; RegulonDB:STMLTH004666" protein_bind 4542320..4542340 /gene="melA" /locus_tag="STM4298" /note="putative binding site for MelR, RegulonDB: STMS1H000278" /bound_moiety="MelR" protein_bind 4542340..4542358 /gene="melA" /locus_tag="STM4298" /note="putative binding site for MelR, RegulonDB: STMS1H000279" /bound_moiety="MelR" regulatory 4542404..4542409 /regulatory_class="ribosome_binding_site" /gene="melA" /locus_tag="STM4298" /note="putative RBS for melA; RegulonDB:STMS1H004194" CDS 4542414..4543769 /gene="melA" /locus_tag="STM4298" /EC_number="3.2.1.22" /note="alpha-galactosidase. (SW:AGAL_SALTY)" /codon_start=1 /transl_table=11 /product="alpha-galactosidase" /protein_id="NP_463163.1" /db_xref="GeneID:1255824" /translation="MMTAPKITFIGAGSTIFVKNILGDVFHREALKSAHVALMDIDET RLEESHIVVRKLMDSAGASGRITCHTNQKAALQDADFVVVAFQIGGYEPCTVTDFEVC KRHGLEQTIADTLGPGGIMRALRTIPHLWRICEDMTEVCPKATMLNYVNPMAMNTWAM YARYPHIKQVGLCHSVQGTAEELARDLNIDPTSLRYRCAGINHMAFYLELERKTADGT YVNLYPELLAAYDAGQAPKPNIHGNERCQNIVRYEMFKKLGYFVTESSEHFAEYTPWF IKPGREDLIARYKVPLDEYPKRCVEQLANWHKELEEYKTAERIDIKPSREYASTIMNA LWTGEPSVIYGNVRNEGLIDNLPQGSCVEVACLVDANGIQPTKVGTIPSHLAAMMQTN INVQTLLTEAILTENRDRVYHAAMMDPHTAAVLGIEEIYALVDDLIAAHGDWLPAWLR R" misc_feature 4542423..4543760 /gene="melA" /locus_tag="STM4298" /note="alpha-galactosidase; Provisional; Region: PRK15076" /db_xref="CDD:185035" gene 4543843..4545283 /gene="melB" /locus_tag="STM4299" /db_xref="GeneID:1255825" regulatory 4543843..4543848 /regulatory_class="ribosome_binding_site" /gene="melB" /locus_tag="STM4299" /note="putative RBS for melB; RegulonDB:STMS1H004195" CDS 4543853..4545283 /gene="melB" /locus_tag="STM4299" /note="melibiose carrier protein (thiomethylgalactoside permease)(melibiose permease) (Na+ (Li+)/melibiose symporter) (melibiosetransporter). (SW:MELB_SALTY)" /codon_start=1 /transl_table=11 /product="GPH family melibiose permease II" /protein_id="NP_463164.1" /db_xref="GeneID:1255825" /translation="MSISLTTKLSYGFGAFGKDFAIGIVYMYLMYYYTDVVGLSVGLV GTLFLVARIWDAINDPIMGWIVNATRSRWGKFKPWILIGTLTNSLVLFLLFSAHLFEG TAQVVFVCVTYILWGMTYTIMDIPFWSLVPTITLDKREREQLVPFPRFFASLAGFVTA GITLPFVSYVGGADRGFGFQMFTLVLIAFFIASTIVTLRNVHEVYSSDNGVTAGRPHL TLKTIVGLIYKNDQLSCLLGMALAYNIASNIINGFAIYYFTYVIGDADLFPYYLSYAG AANLLTLIVFPRLVKMLSRRILWAGASVMPVLSCAGLFAMALADIHNAALIVAAGIFL NIGTALFWVLQVIMVADTVDYGEFKLNIRCESIAYSVQTMVVKGGSAFAAFFIALVLG LIGYTPNVAQSAQTLQGMQFIMIVLPVLFFMMTLVLYFRYYRLNGDMLRKIQIHLLDK YRKTPPFVEQPDSPAISVVATSDVKA" misc_feature 4543853..4545280 /gene="melB" /locus_tag="STM4299" /note="melibiose:sodium transporter MelB; Region: PRK10429" /db_xref="CDD:182453" misc_feature order(4543904..4543909,4543916..4543921,4543928..4543930, 4544027..4544029,4544210..4544215,4544219..4544227, 4544234..4544236,4544297..4544299,4544306..4544311, 4544318..4544320,4544570..4544572,4544579..4544584, 4544591..4544599,4544606..4544608,4544690..4544692, 4544702..4544704,4544861..4544866,4544876..4544878, 4544888..4544890,4544957..4544959,4544966..4544971, 4544978..4544983,4544990..4544992) /gene="melB" /locus_tag="STM4299" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340890" gene complement(4545381..4547067) /gene="fumB" /locus_tag="STM4300" /db_xref="GeneID:1255826" CDS complement(4545381..4547027) /gene="fumB" /locus_tag="STM4300" /EC_number="4.2.1.2" /note="fumarate hydratase class I; anaerobic isozyme; similar to E. coli fumarase B= fumarate hydratase Class I; anaerobic isozyme (AAC77083.1); Blastp hit to AAC77083.1 (548 aa), 92% identity in aa 1 - 548" /codon_start=1 /transl_table=11 /product="fumarase B" /protein_id="NP_463165.1" /db_xref="GeneID:1255826" /translation="MSKKEFIYQAPFPMGEDKTEYYLLTSDYVSVSEFNGESILNVEP QALTLLAQQAFHDASFMLRPEHQQQVAAILHDPEASENDKYVALQFLRNSEIAAKGIL PTCQDTGTAIIMGKKGQRVWTGGGDEAALSKGVFNTYIEDNLRYSQNAPLNMYKEVNT GSNLPAQIDLYAVDGDEYKFLCVAKGGGSANKTYLYQETKALLTPGKLKNFLVEKMRT LGTAACPPYHIAFVIGGTSAESTLKTVKLASTHYYDALPAEGNEHGQAFRDPHLEQEL LEEAQKLGLGAQFGGKYFAHDIRVIRLPRHGASCPVGMGVSCSADRNIKAKINREGIW IEKLEHNPGQYIPPALRQAGEGDAVKVDLNRPMKEILAQLSQYPVSTRLSLTGTIIVG RDIAHAKLKERIESGEDLPQYIKDHPIYYAGPAKTPAGYPSGSLGPTTAGRMDSYVDL LQSHGGSMIMLAKGNRSQQVTDACKKHGGFYLGSIGGPAAVLAQQSIKHLECVEYPEL GMEAIWKIEVEDFPAFILVDDKGNDFFQQIVSKQCANCAK" misc_feature complement(4545384..4547027) /gene="fumB" /locus_tag="STM4300" /note="class I fumarate hydratase; Region: PRK15391" /db_xref="CDD:185289" regulatory complement(4547032..4547037) /regulatory_class="ribosome_binding_site" /gene="fumB" /locus_tag="STM4300" /note="putative RBS for fumB; RegulonDB:STMS1H004196" regulatory complement(4547043..4547051) /regulatory_class="minus_10_signal" /gene="fumB" /locus_tag="STM4300" /note="putative -10_signal for fumB; RegulonDB:STMLTH004667" regulatory complement(4547059..4547067) /regulatory_class="minus_35_signal" /gene="fumB" /locus_tag="STM4300" /note="putative -35_signal for fumB; RegulonDB:STMLTH004667" gene complement(4547123..4548477) /gene="dcuB" /locus_tag="STM4301" /db_xref="GeneID:1255827" CDS complement(4547123..4548463) /gene="dcuB" /locus_tag="STM4301" /note="similar to E. coli anaerobic dicarboxylate transport (AAC77084.1); Blastp hit to AAC77084.1 (446 aa), 97% identity in aa 1 - 446" /codon_start=1 /transl_table=11 /product="Dcu family anaerobic C4-dicarboxylate transporter" /protein_id="NP_463166.1" /db_xref="GeneID:1255827" /translation="MLFSIQLLIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQP GKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTI LCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLG NVTFDGKHLEFLDLLSITIPSTLLGILAIGIFSWFRGKDLDKDEAFQKFISVPENRQY VYGDTATLLDKKLPKSNWLAMWIFLAAIAVVALLGADSDLRPTFGGKPLSMVLVIQMF MLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLG EMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYIL PTYPSDLAAIQFDRSGTTRIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL" misc_feature complement(4547132..4548352) /gene="dcuB" /locus_tag="STM4301" /note="anaerobic C4-dicarboxylate transporter; Reviewed; Region: PRK12489" /db_xref="CDD:237115" protein_bind complement(4547143..4547152) /gene="dcuB" /locus_tag="STM4301" /note="putative binding site for FNR, RegulonDB: STMS1H000164" /bound_moiety="FNR" protein_bind complement(4547258..4547267) /gene="dcuB" /locus_tag="STM4301" /note="putative binding site for FNR, RegulonDB: STMS1H000161" /bound_moiety="FNR" protein_bind complement(4547320..4547329) /gene="dcuB" /locus_tag="STM4301" /note="putative binding site for FNR, RegulonDB: STMS1H000160" /bound_moiety="FNR" regulatory complement(4548472..4548477) /regulatory_class="ribosome_binding_site" /gene="dcuB" /locus_tag="STM4301" /note="putative RBS for dcuB; RegulonDB:STMS1H004197" gene complement(4548610..4548882) /locus_tag="STM4302" /db_xref="GeneID:1255828" CDS complement(4548610..4548876) /locus_tag="STM4302" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463167.1" /db_xref="GeneID:1255828" /translation="MDNTYIGEQIRVSTRHTNNLKKWRDNDHISHMLFDLSRDLPDGE TQKSNNKRLFLKQTNHNLLLSLTPPAHRQRVLPSEHHHRKKIIT" regulatory complement(4548877..4548882) /regulatory_class="ribosome_binding_site" /locus_tag="STM4302" /note="putative RBS for STM4302; RegulonDB:STMS1H004198" gene complement(4549193..4549924) /gene="dcuR" /locus_tag="STM4303" /db_xref="GeneID:1255829" CDS complement(4549193..4549912) /gene="dcuR" /locus_tag="STM4303" /note="regulates anaerobic fumarate respiration; similar to E. coli putative 2-component transcriptional regulator (AAC77085.1); Blastp hit to AAC77085.1 (239 aa), 88% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with DcuS" /protein_id="NP_463168.1" /db_xref="GeneID:1255829" /translation="MINVLIVDDDAMVAELNRRYVAQISGFHCCGTASTLEKAKEFIF NSENHIDLILLDIYMQQENGLDLLPVLHSAGCKSDVIVISSAADAATIKDSLHYGVVD YLIKPFQATRFEEALTGWLRKKTAMEKRQYYEQSELDLLIHGNSSSEQEPRRLPKGLT QQTLRTLCQWIDAHQEQEFSTDELANEVNISRVSCRKYLIWLVNCHILFTSIHYGVTG RPVYRYRVQPEHYSLLKQYCQ" misc_feature complement(4549196..4549912) /gene="dcuR" /locus_tag="STM4303" /note="two-component system response regulator DcuR; Region: PRK10430" /db_xref="CDD:182454" misc_feature complement(order(4549553..4549555,4549562..4549567, 4549574..4549576,4549583..4549585,4549589..4549591, 4549595..4549621,4549640..4549642,4549649..4549678, 4549697..4549699,4549706..4549711,4549742..4549744, 4549760..4549762,4549832..4549837,4549841..4549843, 4549850..4549855,4549862..4549864,4549889..4549891, 4549907..4549909)) /gene="dcuR" /locus_tag="STM4303" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:381152" gene complement(4549909..4551550) /gene="dcuS" /locus_tag="STM4304" /db_xref="GeneID:1255830" CDS complement(4549909..4551540) /gene="dcuS" /locus_tag="STM4304" /EC_number="2.7.3.-" /note="senses fumarate/C4-dicarboxylate; similar to E. coli putative 2-component sensor protein (AAC77086.1); Blastp hit to AAC77086.1 (543 aa), 81% identity in aa 1 - 542" /codon_start=1 /transl_table=11 /product="sensory histidine kinase in two-component retgulatory system with DcuR" /protein_id="NP_463169.1" /db_xref="GeneID:1255830" /translation="MKHSLPCRALRKRPMKLGTTVILMVSAVLFSVLVVVHLIYFSQI SSMTRDALADKALAVARSLADSPAVREGLKKPPAESGIQTLAEAVSQHNGFLFIVVTN MQGIRYSHPETQRIGQPFKGDDILLALQGKENVAINRGFLAKALRVFTPVYDEHHRQI GVVAIGLELSHVTQQINNSRGSIIWSILFGALVGLLGTYALVKVLKRILFGLEPYEIS TLFEQRQAMLQSIKEGVIAVDDSGEVTLINHAAQALLDYRKTQDDARLSTLSHAWSQV VDISEVLRDGTPRRDEEIIVKGRLLLVNTVPVRSNGEIIGAISTFRDKTEVRQLMQRL DGMVNYADALRERSHEFMNKLHVILGLLHLKSYKQLEAYIIKTANNYQEEIGLLLGKI KSPIIAGFLLSKITRASDFGHSLVISSDSQLPDNNNEDQVTVLITALGNLIENALEAL SQESGGEISVSLHYRHGWLHCEVSDDGPGIEPERIEAIFEKGVSSKGAERGVGLALVK QQVEALGGVISVESEPGIFTQFFVQLPWDGKRTSL" misc_feature complement(4549912..4551537) /gene="dcuS" /locus_tag="STM4304" /note="sensory histidine kinase DcuS; Provisional; Region: PRK11086" /db_xref="CDD:236839" regulatory complement(4549919..4549924) /regulatory_class="ribosome_binding_site" /gene="dcuR" /locus_tag="STM4303" /note="putative RBS for dcuR; RegulonDB:STMS1H004199" regulatory complement(4551545..4551550) /regulatory_class="ribosome_binding_site" /gene="dcuS" /locus_tag="STM4304" /note="putative RBS for dcuS; RegulonDB:STMS1H004200" gene 4551969..4554325 /locus_tag="STM4305" /db_xref="GeneID:1255831" regulatory 4551969..4551974 /regulatory_class="ribosome_binding_site" /locus_tag="STM4305" /note="putative RBS for STM4305; RegulonDB:STMS1H004201" CDS 4551974..4554325 /locus_tag="STM4305" /EC_number="1.8.99.-" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit A (AAC73980.1); Blastp hit to AAC73980.1 (785 aa), 51% identity in aa 3 - 784" /codon_start=1 /transl_table=11 /product="putative anaerobic dimethyl sulfoxide reductase, subunit A" /protein_id="NP_463170.3" /db_xref="GeneID:1255831" /translation="MTLSQAITLPFATTAQAQDTPIPKDANGETVRHSACLVNCGSRC PLKVIVKNDRIVRIEPEDAKDDAVFGEHQIRPCLRGRSSRWRVYSPDRIKYPMKRVGK RGEGKFKRISWDEATAFIAAELTRVSEKYGREAIYYNYQSGAYYHTQGRPAWIRLLNL TGGYLNYHNTYSTAQIATATPYTHGDYVGSHFTQIAHSDLVVLFGLNLSETRMSGGGQ VEELRRALETSKARVIIIDPRYTDSVITEHAEWLPIRPTTDAALVAGIAHTLITEQLL DEALVNRYCVGYDRSTLPDTAAPNASYKDYVLGTGDDGIAKTPEWAADITGIPATRIR QLAREIASARACYICQGWGPQRHANGEQTVRAIQTLPALTGHFGRPGTNNGNWPYGTP YGVPLLPVGKNPITTSIPCYLWTDAIQHPEKMTATTMGVKGADRLKTGIKLFFNQAGN TLLNQHGETNRTRQILADESLCETIIVIENHMTPSAMYADLLLPETSYLEAEDLVDSS YAAGSHNYMIAIQKTVKPMWEVRSTYDICADIAGHLGLREQYTEGRTQAQWAEMHYQQ IREKRPYLPEWSVAKEMGVIDQRIATEQQSLAFADFRADAEANPLSTPSGKIEIYSQA LADLAQTWTLPEGERIPALPEFCPAKESHLNKALTAKYPLQLSGFHTKGHTHSTYSNV LMLHEAVPDEVWINPIDASARQLKSGDRVHVFNDRGVVELPCKVTQRILPGVAAMPQG AWTRLDGNGVDVGGCINTLTSHHPSPLAKGNPQHTNLVEIKRA" misc_feature 4551977..4554322 /locus_tag="STM4305" /note="anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; Region: dmsA_ynfE; TIGR02166" /db_xref="CDD:274006" gene 4554332..4554965 /locus_tag="STM4306" /db_xref="GeneID:1255832" regulatory 4554332..4554337 /regulatory_class="ribosome_binding_site" /locus_tag="STM4306" /note="putative RBS for STM4306; RegulonDB:STMS1H004202" CDS 4554339..4554965 /locus_tag="STM4306" /EC_number="1.8.99.-" /note="similar to E. coli anaerobic dimethyl sulfoxide reductase subunit B (AAC73981.1); Blastp hit to AAC73981.1 (205 aa), 60% identity in aa 4 - 205" /codon_start=1 /transl_table=11 /product="putative anaerobic dimethyl sulfoxide reductase, subunit B" /protein_id="NP_463171.1" /db_xref="GeneID:1255832" /translation="MKQYGFYVDSSRCSGCKTCQVSCKDNKDLDVGPKLRRVYEYGGG SWVKEGESWHHDTFTYYLSIACNHCDEPVCVSGCPTGAMHKRKEDGLVVVDDSVCVGC RYCEMRCPYGAPQFDTQANVMRKCDGCLDRLENNLRPICVDSCPQRALDFGPVDELRA KYGTENQIAPLPSASFTHPNLIIKPHPKARPTGDTEGAIMNIREVRHA" misc_feature 4554345..4554827 /locus_tag="STM4306" /note="DMSO reductase, iron-sulfur subunit; Region: DMSO_dmsB; TIGR02951" /db_xref="CDD:131996" gene 4554951..4555731 /locus_tag="STM4307" /db_xref="GeneID:1255833" regulatory 4554951..4554956 /regulatory_class="ribosome_binding_site" /locus_tag="STM4306" /note="putative RBS for STM4307; RegulonDB:STMS1H004203" CDS 4554958..4555731 /locus_tag="STM4307" /note="similar to E. coli putative DMSO reductase anchor subunit (AAC74662.1); Blastp hit to AAC74662.1 (284 aa), 34% identity in aa 6 - 274" /codon_start=1 /transl_table=11 /product="putative anaerobic dimethyl sulfoxide reductase, subunit C" /protein_id="NP_463172.1" /db_xref="GeneID:1255833" /translation="MHELPLVFFTVFTQSAVGAFILLLIGGAMGLVAPRRKAIGLFSV MCLFGLGVIVGTFHVGQPLRALNMLLRVGHSPMSNEIVLSAAFAALGGLGALGLLLNR ATPLCNALVWLAAIVGVVFLYAVPQIYQLPTVATWRSSYTTAMMILTPLIGGGALAAL FGVRRLGLLVSVLAILVSFCLRPGYMATLMSADSALTAAQHSWFTAQAILLAAGVVGV VVCARLKSSAAVLAMTAVVVIAAELAGRIAFYNLWTLPM" misc_feature 4554964..4555713 /locus_tag="STM4307" /note="DMSO reductase anchor subunit DmsC [Energy production and conversion]; Region: DmsC; COG3302" /db_xref="CDD:442531" gene 4555742..4556400 /locus_tag="STM4308" /db_xref="GeneID:1255834" regulatory 4555742..4555747 /regulatory_class="ribosome_binding_site" /locus_tag="STM4308" /note="putative RBS for STM4308; RegulonDB:STMS1H004204" CDS 4555747..4556400 /locus_tag="STM4308" /note="similar to E. coli putative oxidoreductase component (AAC74663.1); Blastp hit to AAC74663.1 (207 aa), 33% identity in aa 14 - 206" /codon_start=1 /transl_table=11 /product="putative component of anaerobic dehydrogenases" /protein_id="NP_463173.1" /db_xref="GeneID:1255834" /translation="MPCKPDQRSVIRRNISGAIAMLSRAVLPRILGALFYYSPERPEV KALFDCLPTLPELYPWRDRGSIESLCASWSLPDDDALTWQFSVLFEGQGKMPVPPWGS VYLEKDNLLMGETTADYRAFLQSQGMVFTDREREPEDQFGLMLLACSDLLARGDNVAA NRLLEAHLLPWGFRYLELLQRNTVSAFYARLAVVATCYLQDVQQQQGLQPENKRLFF" misc_feature 4555816..4556343 /locus_tag="STM4308" /note="Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation [Posttranslational modification, protein turnover, chaperones]; Region: TorD; COG3381" /db_xref="CDD:442608" gene complement(4556484..4557888) /locus_tag="STM4309" /db_xref="GeneID:1255835" CDS complement(4556484..4557884) /locus_tag="STM4309" /codon_start=1 /transl_table=11 /product="putative periplasmic or exported protein" /protein_id="NP_463174.1" /db_xref="GeneID:1255835" /translation="MKLNLITVSLATLVAAGAFPAHAGPQAHVVCGYHHTLGDDAIMM FGKANQAMWHDFFGNTHTDAVSTYQTLRAQPDTTCDNKADSSAYWAPSMKLPDGEIVN PAYQKTYYQSTNVAQYPLHPFPAGLELLAGDHHGTGPSSAITFLCANGKGYTNKVGEI CGLRKAGDAVQFNIGIAFPNCWDGVNLKPTHSHNNAIYADHGKCSADYPVKIPTVNMN IAWVLPQISSLDTSKVELSMDPVMHGETREERWGSLYTAHADFMNGWTEDGAQFMTDL CMNQGLDCGTTVPYAYSKAEENTWVSSEDDKPHASVDTLYVQDDWTNGGRTQHPETLT LVKFKIPPLPANMDASLFKYRIRLFGGKTEANGADQIFFYPTSSDWHVSTVSWNNKPA INYRSDAVLYLDHSHEYRMVDVDKAVRKALAEGKTEISWYIGGDRQGNHYDFTPADSK QSLVLMLTGFKKTPEL" misc_feature complement(4557090..4557767) /locus_tag="STM4309" /note="Domain of unknown function (DUF1996); Region: DUF1996; pfam09362" /db_xref="CDD:462771" misc_feature complement(4556559..4556996) /locus_tag="STM4309" /note="DNRLRE domain; Region: DNRLRE_dom; NF033679" /db_xref="CDD:468137" regulatory complement(4557883..4557888) /regulatory_class="ribosome_binding_site" /locus_tag="STM4309" /note="putative RBS for STM4309; RegulonDB:STMS1H004205" gene 4558188..4559093 /locus_tag="STM4310" /db_xref="GeneID:1255836" CDS 4558188..4559093 /locus_tag="STM4310" /note="similar to E. coli orf, hypothetical protein (AAC77289.1); Blastp hit to AAC77289.1 (323 aa), 34% identity in aa 44 - 318" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463175.1" /db_xref="GeneID:1255836" /translation="MRYDISRDAICYGFFMRLLKRVIVVVLLGVILFMVRDDIRYVYQ LILKYGDKPSALALSSYKAVIQQKPVAGVKSNLSGLTYSAEDRMLFAVINNPPELVWL TTEGQLVGRMPLQGIHDPESIAWSGGNQFQIGSEKDGAVYKTQVDIQRGTMQIISMVK LEGYDKAKNKGLEGTAWDAKNERLYAAKERKPIMIKEVEMSKNGITRALPSAITASVS DVSGLEYHAPTDSLLVLSDESKMILEVSSEWRVRDRLFLTAEWSGLRDDIPQPEGIAM DNENNLYIVSEPNLFYKFSCDIQND" misc_feature 4558350..4559072 /locus_tag="STM4310" /note="Region: SdiA-regulated; pfam06977" /db_xref="CDD:429226" misc_feature order(4558419..4558421,4558467..4558469,4558542..4558544, 4558548..4558550,4558704..4558706,4558848..4558850, 4559001..4559003,4559046..4559048) /locus_tag="STM4310" /note="putative active site [active]" /db_xref="CDD:197380" mobile_element 4559289..4559947 /mobile_element_type="insertion sequence:IS200_6" gene 4559426..4559890 /gene="tnpA_6" /locus_tag="STM4311" /db_xref="GeneID:1255837" regulatory 4559426..4559431 /regulatory_class="ribosome_binding_site" /gene="tnpA_6" /locus_tag="STM4311" /note="putative RBS for tnpA_6; RegulonDB:STMS1H004206" CDS 4559432..4559890 /gene="tnpA_6" /locus_tag="STM4311" /note="transposase for insertion sequence element IS200 (SW:T200_SALTY)" /codon_start=1 /transl_table=11 /product="transposase for IS200" /protein_id="NP_463176.1" /db_xref="GeneID:1255837" /translation="MGDEKSLAHTRWNCKYHIVFAPKYRRQAFYGEKRRAVGSILRKL CEWKNVRILEAECCADHIHMLLEIPPKMSVSSFMGYLKGKSSLMLYEQFGDLKFKYRN REFWCRGYYVDTVGKNTAKIQDYIKHQLEEDKMGEQLSIPYPGSPFTGRK" misc_feature 4559444..4559815 /gene="tnpA_6" /locus_tag="STM4311" /note="Transposase IS200 like; Region: Y1_Tnp; cl00848" /db_xref="CDD:469954" gene complement(4560099..4560368) /locus_tag="STM4312" /db_xref="GeneID:1255838" CDS complement(4560099..4560368) /locus_tag="STM4312" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_463177.1" /db_xref="GeneID:1255838" /translation="MDTQPSAEPTLGSTVSSLDNTVTLKGVVEAHQDIQVKVTVNDTD YTASGTFTGTSPTKNPVNKSSGVDEMISLSEATWHSVSVDEENHA" gene complement(4560376..4560595) /locus_tag="STM4313" /db_xref="GeneID:1255839" CDS complement(4560376..4560591) /locus_tag="STM4313" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463178.1" /db_xref="GeneID:1255839" /translation="MVGKATLDIIFRDRSANAMDNSSLSIGWLTIDSTPPVRSMEDNS DIGAGGDNITNINTPTFIGSLRSSRNN" misc_feature complement(<4560400..4560492) /locus_tag="STM4313" /note="Bacterial Ig-like domain; Region: Big_13; pfam19077" /db_xref="CDD:465968" regulatory complement(4560590..4560595) /regulatory_class="ribosome_binding_site" /locus_tag="STM4313" /note="putative RBS for STM4313; RegulonDB:STMS1H004207" gene complement(4560614..4560901) /locus_tag="STM4314" /db_xref="GeneID:1255840" CDS complement(4560614..4560901) /locus_tag="STM4314" /codon_start=1 /transl_table=11 /product="putative luxR family bacterial regulatory proteins" /protein_id="NP_463179.3" /db_xref="GeneID:1255840" /translation="MRYLTMQYKNKAKHINIRDGILLLAKKFDLTLSEKKVIYYVAAG LSVKSCSNLLDRNIKTISTQKRSAYKKMDITTDVELIHLMLNEFYISVDIT" misc_feature complement(4560632..>4560850) /locus_tag="STM4314" /note="DNA-binding transcriptional regulator, CsgD family [Transcription]; Region: CsgD; COG2771" /db_xref="CDD:442052" gene complement(4560898..4561780) /locus_tag="STM4315" /db_xref="GeneID:1255841" CDS complement(4560898..4561773) /locus_tag="STM4315" /note="HilD (gi|4455108)" /codon_start=1 /transl_table=11 /product="putative AraC-type DNA-binding domain-containing protein" /protein_id="NP_463180.1" /db_xref="GeneID:1255841" /translation="MLKVFNPSPVQVGSIECLQSAQNWQRKSLSLQGLNLLQSVLIKL TTGKISITTSSGEYITASGPMLIFLAKDQTIHITMEETHEQLNYNLIELDSASIKNAY NFFLYEHADFSAPLTKPTTKHLLAPIETGVARVFNLLHSSNKSQKLSQDKKEYLIRFL LSEFIYEPEAFALFRELSQNTLAENIYNIIISDISRKWALKDISDSLYMSCSTLKRKL KQEHTSFSEVYLNARMNKATKLPRNSEYNITRVAYMCGYDSASYFTCVFKKHFKTTPS EFLAFLSSSRHQYVN" misc_feature complement(4560901..4561773) /locus_tag="STM4315" /note="AraC family transcriptional regulator; Provisional; Region: PRK15186" /db_xref="CDD:185108" regulatory complement(4561775..4561780) /regulatory_class="ribosome_binding_site" /locus_tag="STM4315" /note="putative RBS for STM4315; RegulonDB:STMS1H004208" gene complement(4562038..4562259) /locus_tag="STM4316" /db_xref="GeneID:1255842" CDS complement(4562038..4562259) /locus_tag="STM4316" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463181.1" /db_xref="GeneID:1255842" /translation="MNASPPLKLPDIATPSTRRSIYLPRCMPFLAESVNIYIQDKPYH KLTSDLIPHANYLHEIKELFSKRLKAIIT" gene 4562569..4562869 /locus_tag="STM4317" /db_xref="GeneID:1255843" regulatory 4562569..4562574 /regulatory_class="ribosome_binding_site" /locus_tag="STM4317" /note="putative RBS for STM4317; RegulonDB:STMS1H004209" CDS 4562576..4562869 /locus_tag="STM4317" /codon_start=1 /transl_table=11 /product="putative copG family helix-turn-helix protein" /protein_id="NP_463182.1" /db_xref="GeneID:1255843" /translation="MPAANSMAMKRETLNLRIKPAERDLIDRAAKARGKNRTDFVLEA ARAAAEEALIEQRIIMADPEAYQEFLVRLDQTPSPNAALRKTMQTPAPWEQEK" misc_feature 4562591..4562857 /locus_tag="STM4317" /note="Uncharacterized conserved protein, DUF1778 family [Function unknown]; Region: COG4453" /db_xref="CDD:443551" gene 4562858..4563357 /locus_tag="STM4318" /db_xref="GeneID:1255844" regulatory 4562858..4562863 /regulatory_class="ribosome_binding_site" /locus_tag="STM4317" /note="putative RBS for STM4318; RegulonDB:STMS1H004210" CDS 4562866..4563357 /locus_tag="STM4318" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_463183.1" /db_xref="GeneID:1255844" /translation="MISTPEPLHAGHILTPFCCGVDSIDNWLEQRAMKNQTTGASRTF VCCGSDSNVLAYYSLASSAVTTNTSPGRFRRNMPDPIPVVVLGRLAVDKSLHGQGVAR ALVRDAGLRVIQVAETIGIRGMLVHALSDEAREFYQRVGFVPSPMDPMMLMVTLGDLV ESV" misc_feature <4563085..4563303 /locus_tag="STM4318" /note="Predicted N-acetyltransferase YhbS [General function prediction only]; Region: yhbS; COG3153" /db_xref="CDD:442387" gene complement(4563605..4564364) /gene="phoN" /locus_tag="STM4319" /db_xref="GeneID:1255845" CDS complement(4563605..4564357) /gene="phoN" /locus_tag="STM4319" /note="nonspecific acid phosphatase precursor. (SW:PHON_SALTY)" /codon_start=1 /transl_table=11 /product="non-specific acid phosphatase" /protein_id="NP_463184.1" /db_xref="GeneID:1255845" /translation="MKSRYLVFFLPLIVAKYTSAETVQPFHSPEESVNSQFYLPPPPG NDDPAYRYDKEAYFKGYAIKGSPRWKQAAEDADVSVENIARIFSPVVGAKINPKDTPE TWNMLKNLLTMGGYYATASAKKYYMRTRPFVLFNHSTCRPEDENTLRKNGSYPSGHTA YGTLLALVLSEARPERAQELARRGWEFGQSRVICGAHWQSDVDAGRYVGAVEFARLQT IPAFQKSLAKVREELNDKNNLLSKEDHPKLNY" misc_feature complement(4563659..4564336) /gene="phoN" /locus_tag="STM4319" /note="PAP2, bacterial acid phosphatase or class A non-specific acid phosphatases. These enzymes catalyze phosphomonoester hydrolysis, with optimal activity in low pH conditions. They are secreted into the periplasmic space, and their physiological role remains...; Region: PAP2_acid_phosphatase; cd03397" /db_xref="CDD:239491" misc_feature complement(order(4563755..4563757,4563767..4563769, 4563785..4563787,4563884..4563892,4563968..4563970, 4563989..4563991)) /gene="phoN" /locus_tag="STM4319" /note="active site" /db_xref="CDD:239491" regulatory complement(4564359..4564364) /regulatory_class="ribosome_binding_site" /gene="phoN" /locus_tag="STM4319" /note="putative RBS for phoN; RegulonDB:STMS1H004211" gene 4566008..4566347 /locus_tag="STM4320" /db_xref="GeneID:1255846" regulatory 4566008..4566013 /regulatory_class="ribosome_binding_site" /locus_tag="STM4320" /note="putative RBS for STM4320; RegulonDB:STMS1H004212" CDS 4566015..4566347 /locus_tag="STM4320" /note="similar to E. coli putative transcriptional regulator (AAC73589.1); Blastp hit to AAC73589.1 (135 aa), 26% identity in aa 1 - 110" /codon_start=1 /transl_table=11 /product="putative merR family bacterial regulatory protein" /protein_id="NP_463185.1" /db_xref="GeneID:1255846" /translation="MQIGKLAALTGVSIRMLRYYESAGLLHPSRTDTGYRSFSSEDVD IVRRILILNGAGFTLPVVCSLLNCVHAGTSPCEELKAKVREQLAQIDRQFDALSESRN LLNKFLND" misc_feature 4566015..4566338 /locus_tag="STM4320" /note="Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily; Region: HTH_MerR-like_sg3; cd01282" /db_xref="CDD:133388" misc_feature order(4566018..4566026,4566066..4566068,4566114..4566122) /locus_tag="STM4320" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:133388" misc_feature order(4566156..4566158,4566165..4566167,4566177..4566182, 4566207..4566209,4566261..4566263,4566273..4566275, 4566291..4566293,4566303..4566305,4566312..4566317) /locus_tag="STM4320" /note="putative dimer interface [polypeptide binding]; other site" /db_xref="CDD:133388" gene complement(4566593..4566665) /gene="pheR" /locus_tag="STM4321" /db_xref="GeneID:1255847" tRNA complement(4566593..4566665) /gene="pheR" /locus_tag="STM4321" /product="tRNA-Phe" /db_xref="GeneID:1255847" gene complement(4566786..4567373) /gene="yjdC" /locus_tag="STM4322" /db_xref="GeneID:1255848" CDS complement(4566786..4567361) /gene="yjdC" /locus_tag="STM4322" /note="similar to E. coli orf, hypothetical protein (AAC77095.1); Blastp hit to AAC77095.1 (199 aa), 88% identity in aa 9 - 199" /codon_start=1 /transl_table=11 /product="putative merR family bacterial regulatory protein" /protein_id="NP_463186.1" /db_xref="GeneID:1255848" /translation="MQREDILGEALKLLETQGIADTTLEMVAERVNRPLDTLQRFWPD KEAILYDALRYLSQQVDIWRRQLLLDETLSAEQKLLARYSALSECVSNNRYPGCLFIA ACTFYPDPTHPIHQLANQQKRAAHDFTHELLTTLEIDDPAMVARQMELVLEGCLSRML VNRSQADVDTAQRLAEDILRFAQCRQGGALT" misc_feature complement(4566789..4567361) /gene="yjdC" /locus_tag="STM4322" /note="putative transcriptional regulator; Provisional; Region: PRK11640" /db_xref="CDD:183252" regulatory complement(4567368..4567373) /regulatory_class="ribosome_binding_site" /gene="yjdC" /locus_tag="STM4322" /note="putative RBS for yjdC; RegulonDB:STMS1H004213" gene complement(4567398..4569120) /gene="dsbD" /locus_tag="STM4323" /db_xref="GeneID:1255849" CDS complement(4567398..4569101) /gene="dsbD" /locus_tag="STM4323" /note="cytochrome c-type biogenesis; similar to E. coli thiol:disulfide interchange protein; copper tolerance (AAC77096.1); Blastp hit to AAC77096.1 (565 aa), 87% identity in aa 1 - 565" /codon_start=1 /transl_table=11 /product="thiol:disulfide interchange protein" /protein_id="NP_463187.1" /db_xref="GeneID:1255849" /translation="MAQRIFTLILLLCSTSAFAGLFDAPGRSQFVPADRAFVFDFQQN QHDLTLSWQVKEGYYLYRKQISITPTKADIAAVQLPTGVWHEDEFYGKSEIYRKRLNV PVTVNQAAAGATLTVTYQGCADAGFCYPPETKTVPLSEVAAAIDATPTPAVTQTSETS KPAAQLPFSALWALLIGIGIAFTPCVLPMYPLISGIVLGGRQRLSTGRALLLAFIYVQ GMALTYTALGLVVAAAGLQFQAALQHPYVLIGLAIVFTLLALSMFGLFTLQLPSSLQT RLTLMSNRQQGGSPGGVFVMGAIAGLICSPCTTAPLSAILLYIAQSGNMWLGGGTLYL YALGMGLPLMLVTVFGNRLLPKSGPWMAHVKTAFGFVILALPVFLLERIIGEAWGLRL WSLLGVAFFGWAFITSLQARRAWMRIVQIILLAAALISVRPLQDWAFGSPSAQAPAHL NFTAISTVDELNQALAQAKGKPVMLDFYADWCVACKEFEKYTFSDPRVQQALGDTVLL QANVTANNAQDVALLKHLQVLGLPTILFFNTQGQEQPQSRVTGFMDAATFSAHLHDRQ P" misc_feature complement(4567401..4569098) /gene="dsbD" /locus_tag="STM4323" /note="thiol:disulfide interchange protein precursor; Provisional; Region: dipZ; PRK00293" /db_xref="CDD:234717" gene complement(4569077..4569433) /gene="cutA" /locus_tag="STM4324" /db_xref="GeneID:1255850" CDS complement(4569077..4569424) /gene="cutA" /locus_tag="STM4324" /note="cytochrome c biogenesis; similar to E. coli divalent cation tolerance protein; cytochrome c biogenesis (AAC77097.1); Blastp hit to AAC77097.1 (112 aa), 89% identity in aa 1 - 112" /codon_start=1 /transl_table=11 /product="putative periplasmic divalent cation tolerance protein" /protein_id="NP_463188.1" /db_xref="GeneID:1255850" /translation="MLDVKSQDISIPEAVVVLCTAPDEATAQDLAAKVLAEKLAACAT LLPGATSLYYWEGKLEQEYEVQMILKTTVSHQQALIDCLKSHHPYQTPELLVLPVTHG DTDYLSWLNASLR" misc_feature complement(4569080..4569412) /gene="cutA" /locus_tag="STM4324" /note="divalent cation tolerance protein CutA; Region: PRK10645" /db_xref="CDD:182614" regulatory complement(4569115..4569120) /regulatory_class="ribosome_binding_site" /gene="cutA" /locus_tag="STM4324" /note="putative RBS for dsbD; RegulonDB:STMS1H004214" regulatory complement(4569428..4569433) /regulatory_class="ribosome_binding_site" /gene="cutA" /locus_tag="STM4324" /note="putative RBS for cutA; RegulonDB:STMS1H004215" gene complement(4569545..4570859) /gene="dcuA" /locus_tag="STM4325" /db_xref="GeneID:1255851" CDS complement(4569545..4570846) /gene="dcuA" /locus_tag="STM4325" /note="similar to E. coli anaerobic dicarboxylate transport (AAC77098.1); Blastp hit to AAC77098.1 (433 aa), 94% identity in aa 1 - 433" /codon_start=1 /transl_table=11 /product="Dcu family anaerobic dicarboxylate transport protein" /protein_id="NP_463189.1" /db_xref="GeneID:1255851" /translation="MIVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGT IPFDVISIIMAVIAAISAMQVAGGLDYLVNQTEKLLRKNPKYITILAPIVTYFLTIFA GTGNISLATLPVIAEVAKEQGIKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGH GISYIHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLIELRGEKQIE IKPMAKNSVWLFLLGVICVVVYAIVNSPSLGLVEKPLMNTTNAILIIMLSVATLTTIL CKVETDAILNSSTFKAGMSACICILGVAWLGDTFVSANIDWIKDTAGSVIQGHPWLLA VIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQ MDDTGTTRIGKFVFNHPFFIPGTLGVVLAVCFGFLLGSFML" misc_feature complement(4569548..4570846) /gene="dcuA" /locus_tag="STM4325" /note="anaerobic C4-dicarboxylate transporter; Reviewed; Region: PRK09412" /db_xref="CDD:236503" regulatory complement(4570854..4570859) /regulatory_class="ribosome_binding_site" /gene="dcuA" /locus_tag="STM4325" /note="putative RBS for dcuA; RegulonDB:STMS1H004216" gene complement(4570961..4572466) /gene="aspA" /locus_tag="STM4326" /db_xref="GeneID:1255852" CDS complement(4570961..4572397) /gene="aspA" /locus_tag="STM4326" /EC_number="4.3.1.1" /note="similar to E. coli aspartate ammonia-lyase (aspartase) (AAC77099.1); Blastp hit to AAC77099.1 (493 aa), 97% identity in aa 16 - 493" /codon_start=1 /transl_table=11 /product="aspartase" /protein_id="NP_463190.1" /db_xref="GeneID:1255852" /translation="MSNNIRIEEDLLGTREVPAEAYYGVHTLRAIENFYISNNKISDI PEFVRGMVMVKKAAALANKELQTIPKSVANAIIAACDEVLNNGKCMDQFPVDVYQGGA GTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRVAVYASI VKLIDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKSI ERTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFACVPAEDLIEATSDCGA YVMVHSALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPAKVNPVVPE VVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQAMFESIHILSNACYNLLEKCVN GITANKEVCEGYVYNSIGIVTYLNPFIGHHNGDIVGKICAETGKSVREVVLERGLLTE AELDDIFSVQNLMHPAYKAKRYTDESEQ" misc_feature complement(4570979..4572397) /gene="aspA" /locus_tag="STM4326" /note="aspartate ammonia-lyase; Provisional; Region: aspA; PRK12273" /db_xref="CDD:237031" regulatory complement(4572401..4572406) /regulatory_class="ribosome_binding_site" /gene="aspA" /locus_tag="STM4326" /note="putative RBS for aspA; RegulonDB:STMS1H004217" regulatory complement(4572439..4572447) /regulatory_class="minus_10_signal" /gene="aspA" /locus_tag="STM4326" /note="putative -10_signal for aspA; RegulonDB:STMLTH004668" regulatory complement(4572458..4572466) /regulatory_class="minus_35_signal" /gene="aspA" /locus_tag="STM4326" /note="putative -35_signal for aspA; RegulonDB:STMLTH004668" gene 4572699..4573214 /gene="fxsA" /locus_tag="STM4327" /db_xref="GeneID:1255853" CDS 4572699..4573214 /gene="fxsA" /locus_tag="STM4327" /note="similar to E. coli orf, hypothetical protein (AAC77100.1); Blastp hit to AAC77100.1 (125 aa), 92% identity in aa 1 - 125" /codon_start=1 /transl_table=11 /product="suppresses F exclusion of bacteriophage T7" /protein_id="NP_463191.3" /db_xref="GeneID:1255853" /translation="MVVADGHDLQESPLRWIPFLAVFLYVYIEISIFIQVAHVLGVLM TLILVIFTSVIGMSLVRNQGFKNFLLMQQKMAAGESPAAEMIKSVSLIIAGLLLLLPG FFTDFLGLLLLLPPVQKHLTLKLLPHLRFSRMPGGGFSAGTGGGETFDGEYQRKDDDR DRIEHKDDRRD" misc_feature 4572744..4573184 /gene="fxsA" /locus_tag="STM4327" /note="phage T7 F exclusion suppressor FxsA; Reviewed; Region: fxsA; PRK11463" /db_xref="CDD:236913" gene complement(4573273..4574529) /gene="yjeH" /locus_tag="STM4328" /db_xref="GeneID:1255854" CDS complement(4573273..4574514) /gene="yjeH" /locus_tag="STM4328" /note="cytoplasmic membrane protein; similar to E. coli putative transport (AAC77101.1); Blastp hit to AAC77101.1 (418 aa), 71% identity in aa 1 - 410" /codon_start=1 /transl_table=11 /product="putative transporter" /protein_id="NP_463192.1" /db_xref="GeneID:1255854" /translation="MNELKKELGLVQGVILLTTSLLGTGVFALPELAALAAGDISLWA WPLLIILIFPIAIVFAVLGRHFPHAGGVAHFVGMAFGPRLQRVISWLFLSVIPVSFPA ALHIAVGFGQALFGWQSEQLLFGELGTLGLLWFMGSRGASSSANLQAIIAGLIIALIA AILWKGAIKPADITFPAANEITFSRLCTALAIMFWGFVGIEAFTHLSSEFKNPERDFP RALIIGLMLAGSIYWTCTAVVLHFGVYSDKIAATASLPLIIVHLFGIQALWIACIIGY LTCFASLNVYAQSFARLIWTQMQYQPDHYLAQLSPGRLPLHALNVILACCCVSSLVVY ALKINLNALIVYANGIFIMLYLLCMLAGCRLLKGRCYALAVTGCLLCLLLLVMLGWKS LYAIIMLAALWLFLPKRKRMA" misc_feature complement(4573276..4574493) /gene="yjeH" /locus_tag="STM4328" /note="putative transporter; Provisional; Region: PRK11021" /db_xref="CDD:236823" regulatory complement(4574524..4574529) /regulatory_class="ribosome_binding_site" /gene="yjeH" /locus_tag="STM4328" /note="putative RBS for yjeH; RegulonDB:STMS1H004218" gene 4574776..4575083 /gene="mopB" /locus_tag="STM4329" /db_xref="GeneID:1255855" regulatory 4574776..4574781 /regulatory_class="ribosome_binding_site" /gene="mopB" /locus_tag="STM4329" /note="putative RBS for mopB; RegulonDB:STMS1H004219" CDS 4574790..4575083 /gene="mopB" /locus_tag="STM4329" /note="affects cell division; similar to E. coli GroES, 10 Kd chaperone binds to Hsp60 in pres. Mg-ATP, suppressing its ATPase activity (AAC77102.1); Blastp hit to AAC77102.1 (97 aa), 90% identity in aa 1 - 97" /codon_start=1 /transl_table=11 /product="chaperone Hsp10" /protein_id="NP_463193.1" /db_xref="GeneID:1255855" /translation="MSIRPLHDRVIVKRKEVESKSAGGIVLTGSAAGKSTRGEIIAVG KGRILDNGTVQPLDVKVGDIVIFNDGYGVKSEKIDNEEVLIMSESDILAIVEA" misc_feature 4574790..4575077 /gene="mopB" /locus_tag="STM4329" /note="co-chaperonin GroES; Reviewed; Region: groES; PRK00364" /db_xref="CDD:178988" misc_feature order(4574793..4574795,4574799..4574801,4574805..4574807, 4574814..4574816,4574895..4574900,4574961..4574963, 4574991..4574993,4575006..4575008,4575015..4575017, 4575063..4575071) /gene="mopB" /locus_tag="STM4329" /note="oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:238197" misc_feature 4574841..4574882 /gene="mopB" /locus_tag="STM4329" /note="mobile loop [active]" /db_xref="CDD:238197" misc_feature order(4574922..4574924,4574955..4574957) /gene="mopB" /locus_tag="STM4329" /note="roof hairpin [active]" /db_xref="CDD:238197" gene 4575113..4576773 /gene="mopA" /locus_tag="STM4330" /db_xref="GeneID:1255856" regulatory 4575113..4575118 /regulatory_class="ribosome_binding_site" /gene="mopA" /locus_tag="STM4330" /note="putative RBS for mopA; RegulonDB:STMS1H004220" CDS 4575127..4576773 /gene="mopA" /locus_tag="STM4330" /note="affects cell division; similar to E. coli GroEL, chaperone Hsp60, peptide-dependent ATPase, heat shock protein (AAC77103.1); Blastp hit to AAC77103.1 (548 aa), 98% identity in aa 1 - 548" /codon_start=1 /transl_table=11 /product="chaperone Hsp60 with peptide-dependent ATPase activity" /protein_id="NP_463194.1" /db_xref="GeneID:1255856" /translation="MAAKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSF GAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIITE GLKAVAAGMNPMDLKRGIDKAVAAAVEELKALSVPCSDSKAIAQVGTISANSDETVGK LIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESP FILLADKKISNIREMLPVLEAVAKAGKPLLIIAEDVEGEALATLVVNTMRGIVKVAAV KAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKATLEDLGQAKRVVINKDTTTIID GVGEEAAIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEK KARVEDALHATRAAVEEGVVAGGGVALIRVASKIADLKGQNEDQNVGIKVALRAMEAP LRQIVLNCGEEPSVVANTVKGGDGNYGYNAATEEYGNMIDMGILDPTKVTRSALQYAA SVAGLMITTECMVTDLPKSDAPDLGAAGGMGGMGGMGGMM" misc_feature 4575130..4576716 /gene="mopA" /locus_tag="STM4330" /note="chaperonin GroEL; Reviewed; Region: groEL; PRK00013" /db_xref="CDD:234573" misc_feature order(4575136..4575138,4575148..4575150,4575199..4575201, 4575232..4575243,4575247..4575249,4575262..4575267, 4575271..4575273,4575301..4575303,4575307..4575309, 4575331..4575333,4575343..4575345,4575352..4575354, 4575715..4575717,4575811..4575813,4575895..4575897, 4576276..4576278,4576282..4576284,4576501..4576503, 4576663..4576665,4576672..4576692) /gene="mopA" /locus_tag="STM4330" /note="ring oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:239460" misc_feature order(4575217..4575225,4575385..4575387,4575397..4575399, 4575574..4575576,4576318..4576320,4576369..4576371, 4576486..4576488,4576603..4576605,4576609..4576611) /gene="mopA" /locus_tag="STM4330" /note="ATP/Mg binding site [chemical binding]; other site" /db_xref="CDD:239460" misc_feature order(4575451..4575453,4576426..4576428,4576480..4576482, 4576507..4576509,4576513..4576518,4576525..4576527) /gene="mopA" /locus_tag="STM4330" /note="stacking interactions [active]" /db_xref="CDD:239460" misc_feature order(4575547..4575549,4575682..4575684,4575703..4575705, 4576249..4576251,4576351..4576356) /gene="mopA" /locus_tag="STM4330" /note="hinge regions; other site" /db_xref="CDD:239460" gene 4576999..4577370 /gene="yjeI" /locus_tag="STM4331" /db_xref="GeneID:1255857" CDS 4576999..4577370 /gene="yjeI" /locus_tag="STM4331" /note="similar to E. coli orf, hypothetical protein (AAC77104.1); Blastp hit to AAC77104.1 (128 aa), 89% identity in aa 6 - 128" /codon_start=1 /transl_table=11 /product="putative outer membrane lipoprotein" /protein_id="NP_463195.3" /db_xref="GeneID:1255857" /translation="MIMGNNMHVKYLAGIVGAALLMAGCSSSNELTAAGQNVRFVEDK PGAECQLIGTATGKQSNWFSGQHGEEGGSMRGAANDLRNQAAAMGGNVLYGVSSPSQG MLSSFVPTASEMNGQVYKCPN" misc_feature 4577083..4577361 /gene="yjeI" /locus_tag="STM4331" /note="Domain of unknown function (DUF4156); Region: DUF4156; pfam13698" /db_xref="CDD:433411" gene complement(4577418..4578288) /gene="yjeJ" /locus_tag="STM4332" /db_xref="GeneID:1255858" CDS complement(4577418..4578275) /gene="yjeJ" /locus_tag="STM4332" /note="similar to E. coli orf, hypothetical protein (AAC77105.1); Blastp hit to AAC77105.1 (289 aa), 58% identity in aa 1 - 283" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463196.1" /db_xref="GeneID:1255858" /translation="MALTIKGLNTGVIRHNDKFIALALKVKSLRNKETLLFFPVLALR DLLIGLEHRLYLQHSLPEQEQEKRQKAKSSHVLKMHENIPAILREELENADVNQRVES LALSDNTEKVLTFTLKLHNGSHLDLQVGEWQVEVLVMAIIHAINNAEMRELALRISSM LDFLPLYDADCLENGNIEFDTYNQPDWKHNLYNHYLALVYRYTDEAGQSHDCGTIIKT RSQSGSKEAEAISRRLLNFSPRLKKLEGKPCKVFVRTLGTGKAARLTQDQCMRALHNL RMASSQEKR" misc_feature complement(4577427..4578275) /gene="yjeJ" /locus_tag="STM4332" /note="YjeJ-like; Region: YjeJ; pfam15922" /db_xref="CDD:292544" regulatory complement(4578283..4578288) /regulatory_class="ribosome_binding_site" /gene="yjeJ" /locus_tag="STM4332" /note="putative RBS for yjeJ; RegulonDB:STMS1H004221" gene complement(4578557..4579604) /gene="yjeK" /locus_tag="STM4333" /db_xref="GeneID:1255859" CDS complement(4578557..4579585) /gene="yjeK" /locus_tag="STM4333" /note="similar to E. coli orf, hypothetical protein (AAC77106.1); Blastp hit to AAC77106.1 (342 aa), 87% identity in aa 1 - 341" /codon_start=1 /transl_table=11 /product="putative aminomutase" /protein_id="NP_463197.1" /db_xref="GeneID:1255859" /translation="MAHIVTLNTPLREDWLAQLADVVTNPDELLHLLQIEADENLRAG QDARRLFALRVPRAFIARMEKGNPDDPLLRQVLTSRDEFIVAPGFSTDPLEEQHSVVP GLLHKYQNRALLLVKGGCAVNCRYCFRRHFPYAENQGNKRNWTVALEYIAAHPELDEI IFSGGDPLMAKDHELDWLLTQLEAIKHVKRLRIHSRLPIVIPARITDELVARFDQSRL QILLVNHINHANEVDEAFGLAMKKLRHVGVTLLNQSVLLRGVNDNARTLANLSNALFD AGVMPYYLHVLDKVQGAAHFMVTDDEARQIMRELLTLVSGYMVPRLAREIGGEPSKTP LDLQLRQC" misc_feature complement(4578581..4579543) /gene="yjeK" /locus_tag="STM4333" /note="EF-P beta-lysylation protein EpmB; Region: EFP_modif_epmB; TIGR03821" /db_xref="CDD:163533" regulatory complement(4579599..4579604) /regulatory_class="ribosome_binding_site" /gene="yjeK" /locus_tag="STM4333" /note="putative RBS for yjeK; RegulonDB:STMS1H004222" gene 4579617..4580192 /gene="efp" /locus_tag="STM4334" /db_xref="GeneID:1255860" regulatory 4579617..4579622 /regulatory_class="ribosome_binding_site" /gene="efp" /locus_tag="STM4334" /note="putative RBS for efp; RegulonDB:STMS1H004223" CDS 4579626..4580192 /gene="efp" /locus_tag="STM4334" /note="EF-P; similar to E. coli elongation factor P (EF-P) (AAC77107.1); Blastp hit to AAC77107.1 (188 aa), 98% identity in aa 1 - 188" /codon_start=1 /transl_table=11 /product="elongation factor P" /protein_id="NP_463198.1" /db_xref="GeneID:1255860" /translation="MATYYSNDFRSGLKIMLDGEPYAVESSEFVKPGKGQAFARVKLR RLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGD NAKWLLDQAECIVTLWNGQPISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGA VVKVPLFVQIGEVIKVDTRSGEYVSRVK" misc_feature 4579626..4580189 /gene="efp" /locus_tag="STM4334" /note="Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]; Region: Efp; COG0231" /db_xref="CDD:440001" gene 4580211..4580387 /gene="ecnA" /locus_tag="STM4335" /db_xref="GeneID:1255861" CDS 4580211..4580387 /gene="ecnA" /locus_tag="STM4335" /codon_start=1 /transl_table=11 /product="putative entericidin A precursor" /protein_id="NP_463199.3" /db_xref="GeneID:1255861" /translation="MVQRMLRHPIFRASMMKRFIGLVALVLLTSTLLTACNTARGFGE DIQHLGHAISRAAS" misc_feature 4580256..4580384 /gene="ecnA" /locus_tag="STM4335" /note="Predicted small secreted protein [Function unknown]; Region: COG5510" /db_xref="CDD:444261" gene 4580488..4580641 /gene="ecnB" /locus_tag="STM4336" /db_xref="GeneID:1255862" regulatory 4580488..4580493 /regulatory_class="ribosome_binding_site" /gene="ecnB" /locus_tag="STM4336" /note="putative RBS for ecnB; RegulonDB:STMS1H004224" CDS 4580495..4580641 /gene="ecnB" /locus_tag="STM4336" /codon_start=1 /transl_table=11 /product="putative entericidin B precursor" /protein_id="NP_463200.1" /db_xref="GeneID:1255862" /translation="MVKKTIAAIFSVLVLSTVLTACNTTRGVGEDISDGGSAISGAAT RAQQ" misc_feature 4580495..4580638 /gene="ecnB" /locus_tag="STM4336" /note="lipoprotein toxin entericidin B; Region: PRK10081" /db_xref="CDD:170240" gene complement(4580672..4581263) /gene="ecnR" /locus_tag="STM4337" /db_xref="GeneID:1255863" CDS complement(4580672..4581259) /gene="ecnR" /locus_tag="STM4337" /codon_start=1 /transl_table=11 /product="putative luxR family bacterial regulatory protein" /protein_id="NP_463201.1" /db_xref="GeneID:1255863" /translation="MLKILVIDRCHFTRTGMEAWLNHTDVLSSSLLVSGMNNLILAKE HILQWKPHLVIADLYGFLNDALPEQPINAFFAACRMTPLVLLQSGNMPYRPQYASHAV LSKHTPLHELAQRIKGALHTHPLQEAPESATPLLSPQEEKVLAMWTEGTSNKEIAYAL GIHGKTVYTYKRNIRMKLHMDNRYSPFLMLPEKID" misc_feature complement(4580711..4581259) /gene="ecnR" /locus_tag="STM4337" /note="DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains [Signal transduction mechanisms, Transcription]; Region: CitB; COG2197" /db_xref="CDD:441799" misc_feature complement(4580708..4580854) /gene="ecnR" /locus_tag="STM4337" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature complement(order(4580711..4580713,4580744..4580758, 4580762..4580767,4580771..4580776,4580798..4580806, 4580843..4580851)) /gene="ecnR" /locus_tag="STM4337" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" regulatory complement(4581258..4581263) /regulatory_class="ribosome_binding_site" /gene="ecnR" /locus_tag="STM4337" /note="putative RBS for ecnR; RegulonDB:STMS1H004225" gene 4581504..4581833 /gene="sugE" /locus_tag="STM4338" /db_xref="GeneID:1255864" regulatory 4581504..4581509 /regulatory_class="ribosome_binding_site" /gene="sugE" /locus_tag="STM4338" /note="putative RBS for sugE; RegulonDB:STMS1H004226" CDS 4581516..4581833 /gene="sugE" /locus_tag="STM4338" /note="similar to E. coli suppresses groEL, may be chaperone (AAC77108.1); Blastp hit to AAC77108.1 (155 aa), 85% identity in aa 51 - 155" /codon_start=1 /transl_table=11 /product="putative DMT superfamily transport protein" /protein_id="NP_463202.1" /db_xref="GeneID:1255864" /translation="MSWIILLIAGLLEVVWAVGLKYTHGFSRLTPSIITITAMVISMA LLSWAMKTLPVGTAYAIWTGIGAVGAAITGILLLGESASPARLLSLGLIVAGIIGLKL SAH" misc_feature 4581516..4581830 /gene="sugE" /locus_tag="STM4338" /note="quaternary ammonium compound efflux SMR transporter SugE; Region: PRK11431" /db_xref="CDD:171110" gene complement(4581850..4582396) /gene="blc" /locus_tag="STM4339" /db_xref="GeneID:1255865" CDS complement(4581850..4582383) /gene="blc" /locus_tag="STM4339" /note="lipocalin; similar to E. coli outer membrane lipoprotein (lipocalin) (AAC77109.1); Blastp hit to AAC77109.1 (177 aa), 89% identity in aa 1 - 177" /codon_start=1 /transl_table=11 /product="outer membrane lipoprotein" /protein_id="NP_463203.1" /db_xref="GeneID:1255865" /translation="MRLLPVVAAVTAAFLVVACSSPTPPKGVTVVNNFDAKRYLGTWY EIARLDHRFERGLEQVTATYSLRDDGGINVINKGYNPDREMWQKTEGKAYFTGSPNRA ALKVSFFGPFYGGYNVIALDREYRHALVCGPDRDYLWILSRTPTLSEEIKQQMLAVAT REGFDVNKLIWVKQSGS" misc_feature complement(4581853..4582383) /gene="blc" /locus_tag="STM4339" /note="outer membrane lipoprotein Blc; Provisional; Region: PRK10477" /db_xref="CDD:182489" regulatory complement(4582391..4582396) /regulatory_class="ribosome_binding_site" /gene="blc" /locus_tag="STM4339" /note="putative RBS for blc; RegulonDB:STMS1H004227" gene complement(4582495..4582866) /gene="frdD" /locus_tag="STM4340" /db_xref="GeneID:1255866" CDS complement(4582495..4582854) /gene="frdD" /locus_tag="STM4340" /EC_number="1.3.-.-" /note="anaerobic; membrane anchor polypeptide; similar to E. coli fumarate reductase, anaerobic, membrane anchor polypeptide (AAC77111.1); Blastp hit to AAC77111.1 (119 aa), 92% identity in aa 1 - 119" /codon_start=1 /transl_table=11 /product="fumarate reductase" /protein_id="NP_463204.1" /db_xref="GeneID:1255866" /translation="MINPNPKRSDEPVFWGLFGAGGMWGAIIAPVIVLLVGIMLPLGL FPGDALSFERVLTFAQSFIGRVFLFLMIVLPLWCGLHRMHHAMHDLKIHVPAGKWVFY GLAAILTVVTAIGVITL" misc_feature complement(4582498..4582851) /gene="frdD" /locus_tag="STM4340" /note="fumarate reductase subunit FrdD; Region: PRK05470" /db_xref="CDD:180105" misc_feature complement(order(4582588..4582590,4582810..4582812, 4582819..4582821,4582828..4582833)) /gene="frdD" /locus_tag="STM4340" /note="Iron-sulfur protein interface [active]" /db_xref="CDD:238307" misc_feature complement(order(4582798..4582803,4582810..4582812)) /gene="frdD" /locus_tag="STM4340" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:238307" misc_feature complement(order(4582498..4582500,4582519..4582521, 4582582..4582590,4582606..4582611,4582639..4582641, 4582678..4582680,4582687..4582689,4582693..4582695, 4582699..4582701,4582732..4582734,4582777..4582779, 4582789..4582791)) /gene="frdD" /locus_tag="STM4340" /note="C-subunit interface [active]" /db_xref="CDD:238307" misc_feature complement(order(4582681..4582683,4582690..4582695, 4582747..4582749,4582759..4582761)) /gene="frdD" /locus_tag="STM4340" /note="distal quinone binding site; other site" /db_xref="CDD:238307" regulatory complement(4582861..4582866) /regulatory_class="ribosome_binding_site" /gene="frdD" /locus_tag="STM4340" /note="putative RBS for frdD; RegulonDB:STMS1H004228" gene complement(4582865..4583272) /gene="frdC" /locus_tag="STM4341" /db_xref="GeneID:1255867" CDS complement(4582865..4583260) /gene="frdC" /locus_tag="STM4341" /EC_number="1.3.-.-" /note="anaerobic; membrane anchor polypeptide; similar to E. coli fumarate reductase, anaerobic, membrane anchor polypeptide (AAC77112.1); Blastp hit to AAC77112.1 (131 aa), 89% identity in aa 1 - 131" /codon_start=1 /transl_table=11 /product="fumarate reductase" /protein_id="NP_463205.1" /db_xref="GeneID:1255867" /translation="MTTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELI FGLFALKHGAESWMGFVGFLQNPVVVILNLITLAAALLHTKTWFELAPKAANIIVKDE KMGPEPIIKGLWVVTAVVTVVILYVALFW" misc_feature complement(4582871..4583260) /gene="frdC" /locus_tag="STM4341" /note="fumarate reductase subunit FrdC; Region: PRK04987" /db_xref="CDD:235327" misc_feature complement(order(4582877..4582879,4582889..4582891, 4582973..4582975,4582979..4582984,4582991..4582993, 4583000..4583002,4583009..4583014,4583030..4583032, 4583042..4583044,4583066..4583068,4583090..4583092, 4583108..4583113,4583117..4583119,4583129..4583131, 4583141..4583146,4583159..4583161,4583165..4583167, 4583171..4583176,4583183..4583185,4583192..4583197, 4583201..4583203,4583213..4583215,4583219..4583221, 4583225..4583227,4583231..4583233,4583237..4583248)) /gene="frdC" /locus_tag="STM4341" /note="D-subunit interface [polypeptide binding]; other site" /db_xref="CDD:238306" misc_feature complement(order(4582973..4582975,4582982..4582984, 4582991..4582993,4583174..4583176,4583183..4583185, 4583192..4583197,4583201..4583203,4583225..4583227, 4583231..4583233,4583237..4583239,4583243..4583248)) /gene="frdC" /locus_tag="STM4341" /note="Iron-sulfur protein interface [active]" /db_xref="CDD:238306" misc_feature complement(order(4582991..4582993,4583000..4583002, 4583171..4583176)) /gene="frdC" /locus_tag="STM4341" /note="proximal quinone binding site [chemical binding]; other site" /db_xref="CDD:238306" misc_feature complement(4582877..4582879) /gene="frdC" /locus_tag="STM4341" /note="distal quinone binding site [chemical binding]; other site" /db_xref="CDD:238306" regulatory complement(4583267..4583272) /regulatory_class="ribosome_binding_site" /gene="frdC" /locus_tag="STM4341" /note="putative RBS for frdC; RegulonDB:STMS1H004229" gene complement(4583271..4584018) /gene="frdB" /locus_tag="STM4342" /db_xref="GeneID:1255868" CDS complement(4583271..4584005) /gene="frdB" /locus_tag="STM4342" /EC_number="1.3.-.-" /note="anaerobic; Fe-S protein subunit; similar to E. coli fumarate reductase, anaerobic, iron-sulfur protein subunit (AAC77113.1); Blastp hit to AAC77113.1 (244 aa), 95% identity in aa 1 - 244" /codon_start=1 /transl_table=11 /product="fumarate reductase" /protein_id="NP_463206.1" /db_xref="GeneID:1255868" /translation="MAEMKNLKVEVVRYNPETDTAPHSAFYEVPYDETTSLLDALGYI KDNLSPDLSYRWSCRMAICGSCGMMVNNVPKLACKTFLRDYTNGMKVEALANFPIERD LVVDMTHFIESLEAIKPYIIGNSRTPDQGPNVQTPAQMAKYHQFSGCINCGLCYAACP QFGLNPEFIGPAAITLAHRYNEDSRDHGKKERMAQLNSPNGVWTCTFVGYCSEVCPKH VDPAAAIQQGKVESSKDFLIATLKPR" misc_feature complement(4583274..4584005) /gene="frdB" /locus_tag="STM4342" /note="succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Region: PRK12385" /db_xref="CDD:183490" gene complement(4583998..4585927) /gene="frdA" /locus_tag="STM4343" /db_xref="GeneID:1255869" CDS complement(4583998..4585788) /gene="frdA" /locus_tag="STM4343" /EC_number="1.3.-.-" /note="anaerobic; flavoprotein subunit; similar to E. coli fumarate reductase, anaerobic, flavoprotein subunit (AAC77114.1); Blastp hit to AAC77114.1 (602 aa), 95% identity in aa 1 - 595" /codon_start=1 /transl_table=11 /product="fumarate reductase" /protein_id="NP_463207.1" /db_xref="GeneID:1255869" /translation="MQTFQADLAIIGAGGAGLRAAIAAAQANPNAKIALISKVYPMRS HTVAAEGGSAAVAQDHDSFDYHFHDTVAGGDWLCEQDVVDYFVHHCPTEMTQLEQWGC PWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLD ILVDDNHARGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMAL SHGVPLRDMEFVQYHPTGLPGSGILMTEGCRGEGGILVNKNGYRYLQDYGMGPETPLG EPKNKYMELGPRDKVSQAFWHEWRKGNTISTPRGDVVHLDLRHLGEKKLHERLPFICE LAKAYVGVDPVKEPIPVRPTAHYTMGGIETDQNCESRVKGLFAVGECSSVGLHGANRL GSNSLAELVVFGRLAGEQAMERAATAGAANSAALDAQVADIEQRLKNLVNQEGNENWS KIRDEMGLSMEEGCGIYRTPELMQKTVDKLAELQERFKRVRISDTSSVFNTDLLYTIE LGHGLNVAECMAHSALARKESRGAHQRLDEGCTERDDVNFLKHTLAFRDADGTTRLEY SDVKITTLPPAKRVYGGEAEAADKKEKANG" misc_feature complement(4584040..4585785) /gene="frdA" /locus_tag="STM4343" /note="fumarate reductase flavoprotein subunit; Validated; Region: PRK09231" /db_xref="CDD:236421" regulatory complement(4584013..4584018) /regulatory_class="ribosome_binding_site" /gene="frdB" /locus_tag="STM4342" /note="putative RBS for frdB; RegulonDB:STMS1H004230" regulatory complement(4585793..4585798) /regulatory_class="ribosome_binding_site" /gene="frdA" /locus_tag="STM4343" /note="putative RBS for frdA; RegulonDB:STMS1H004231" protein_bind complement(4585868..4585888) /gene="frdA" /locus_tag="STM4343" /note="putative binding site for NarL, RegulonDB: STMS1H000310" /bound_moiety="NarL" regulatory complement(4585900..4585908) /regulatory_class="minus_10_signal" /gene="frdA" /locus_tag="STM4343" /note="putative -10_signal for frdA; RegulonDB:STMLTH004669" protein_bind complement(4585912..4585936) /note="putative binding site for FNR, RegulonDB: STMS1H000173" /bound_moiety="FNR" regulatory complement(4585919..4585927) /regulatory_class="minus_35_signal" /gene="frdA" /locus_tag="STM4343" /note="putative -35_signal for frdA; RegulonDB:STMLTH004669" protein_bind complement(4586054..4586074) /note="putative binding site for NarL, RegulonDB: STMS1H000318" /bound_moiety="NarL" gene 4586097..4587088 /gene="yjeA" /locus_tag="STM4344" /db_xref="GeneID:1255870" regulatory 4586097..4586102 /regulatory_class="ribosome_binding_site" /gene="yjeA" /locus_tag="STM4344" /note="putative RBS for yjeA; RegulonDB:STMS1H004232" CDS 4586111..4587088 /gene="yjeA" /locus_tag="STM4344" /EC_number="6.1.1.6" /note="putative LYSL-tRNA synthetase. (SW:SYK3_SALTY); putative pyruvate oxidase" /codon_start=1 /transl_table=11 /product="lysyl-tRNA synthetase" /protein_id="NP_463208.1" /db_xref="GeneID:1255870" /translation="MSETATWQPSASIPNLLKRAAIMAEIRRFFADRGVLEVETPCMS QATVTDIHLFPFETRFVGPGHSQGINLYLMTSPEYHMKRLLAAGCGPVFQLCRSFRNE EMGRHHNPEFTMLEWYRPHYDMYRLMNEVDDLLQQVLDCQPAESLSYQQAFQRHLEID PLSADKTQLREAAAKLDLSNIADTEEDRDTLLQLLFTMGVEPHIGKEKPTFIYHFPAS QASLAQISTEDHRVAERFEVYYKGIELANGFHELTDAREQQQRFEQDNRKRAARGLPQ QPIDQNLLDALAAGLPDCSGVALGVDRLVMLALGAESLADVIAFTVDRA" misc_feature 4586144..4587061 /gene="yjeA" /locus_tag="STM4344" /note="elongation factor P--(R)-beta-lysine ligase; Region: PRK09350" /db_xref="CDD:236474" gene 4587301..4588816 /gene="yjeM" /locus_tag="STM4345" /db_xref="GeneID:1255871" regulatory 4587301..4587306 /regulatory_class="ribosome_binding_site" /gene="yjeM" /locus_tag="STM4345" /note="putative RBS for yjeM; RegulonDB:STMS1H004233" CDS 4587314..4588816 /gene="yjeM" /locus_tag="STM4345" /note="hypothetical protein in poxA-psd intergenic region. (SW:YJEM_SALTY)" /codon_start=1 /transl_table=11 /product="putative APC family amino-acid transport protein" /protein_id="NP_463209.1" /db_xref="GeneID:1255871" /translation="MTHTIKKMSLIGLILMIFTSVFGFANSPSAFYLMGYSAIPWYIF SALLFFIPFALMMAEMGSAYRKEEGGIYSWMNNSVGPRYAFIGTFMWFSSYVIWMVST AAKIWVPFSTFVFGADMTQHWRIAGLEPTQVVGLLAVGWMILVTCVAARGINKIARIT AVGGIAVMCLNLVLLLVSVAILLLNGGHFAQEINFTSSPNPGYHSGLAMLSFVVFAIF AYGGIEAVGGLVDKTEKPEKNFAKGIVFAAIVISIGYSLAIFLWGVSTNWQQILSNSA VNLGNITYILMSSLGTTLGNALNLSPEAAMTVGVWFARITGLSMFLAYTGAFFTLSYS PLKAIIQGTPKALWPAPMTTLNANGMPATAMWLQCVLVSLFILLVSFGGDTASAFYNK LTLMANVSMTLPYLFLALAFPFFKARQDLERPFVLFKTKASTLVATGVVVLVVTFANV FTIIQPVIEAGDWDSALWMIGGPIFFSLLAMAIYQNYSSRMSADPEWAAE" misc_feature 4587314..4588792 /gene="yjeM" /locus_tag="STM4345" /note="inner membrane transporter YjeM; Provisional; Region: PRK15238" /db_xref="CDD:237929" gene 4588855..4589182 /gene="yjeO" /locus_tag="STM4346" /db_xref="GeneID:1255872" regulatory 4588855..4588860 /regulatory_class="ribosome_binding_site" /gene="yjeO" /locus_tag="STM4346" /note="putative RBS for yjeO; RegulonDB:STMS1H004234" CDS 4588868..4589182 /gene="yjeO" /locus_tag="STM4346" /note="similar to E. coli orf, hypothetical protein (AAC77118.1); Blastp hit to AAC77118.1 (104 aa), 56% identity in aa 1 - 104" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463210.1" /db_xref="GeneID:1255872" /translation="MSPKMFALCAIWILLAIPLIAVFSVLDKEWMIGESGITNICDVM RTVENDDSRSFGAMMTLPLFFPFFYVTVYKKIRSWFLYCVALVIFAYWSWQFFLRYQF CV" misc_feature 4588883..4589176 /gene="yjeO" /locus_tag="STM4346" /note="Protein of unknown function (DUF2645); Region: DUF2645; pfam10840" /db_xref="CDD:431518" gene complement(4589249..4592587) /gene="yjeP" /locus_tag="STM4347" /db_xref="GeneID:1255873" CDS complement(4589249..4592575) /gene="yjeP" /locus_tag="STM4347" /note="similar to E. coli putative periplasmic binding protein (AAC77119.1); Blastp hit to AAC77119.1 (1107 aa), 89% identity in aa 1 - 1107" /codon_start=1 /transl_table=11 /product="putative periplasmic binding protein" /protein_id="NP_463211.1" /db_xref="GeneID:1255873" /translation="MRLIIAFLMAWCLSTGAFAATAPDAKQITQELEQAKAAKPAQPE AVEALQTALNALEERKGSLERAKQYQHVIDNFPKLSATLRAQLNNLRDEPRSVPPEMS TEALNQEILQVSSQLLDKTREAQQEQERVREIADSLSQLPQQQNDARRQLNEIERRLG AAGGSAALSQAQSLSMQAESAKLKALVDELELAQLSANNRQELARLRSELAEKQSQQL DAYLQALRNQLNSLRQREAERALESTELLAENSAGLPEGIVEQFKVNRELSQALNQQA QRMDLVASQQRQATSQTLQVRQALNTLREQSQWLGVSNMLGEALRAQVARLPEMPKPQ QLDTEMAQLRVHRMRYEELLNKQPQLRQIRQANGQPLTAEQNQILDAQLRTQRELLNS LLQGGDTLILELTKLKVSNSQLEDALKEVNEATHRYLFWTADVSPLSLSWPVDLVQDL RRLISLDTFNQLGKASIMMLTSKETLLPLFGALALVGFSLYSRQHFNRFLERSASRVG KVTQDHFSLTLRTVFWSILVASPLPVLWATLGYGLQEAWPYPLAVAIGDGVTATVPLL WVVMICAAFARPNGLFVAHFGWPRNRVAKAMRYYLMSIGLIVPLIMAVIMFDNLNDRE FSGSLGRLCFILICGALALVTLSLKKAGIPLYLDKEGNGDNMVNSLLWNMLMGAPLIA ILAAAVGYLATAQALLARLETSVAIWFLLLVIYHVIRRWMLIQRRRLAFDRAKHRRAE MLAQRARGEEEPAHSSSLEGAVDIDESEIDLDAISAQSLRLVRSILMLIALLSVIVLW SEIHSAFGFLENISLWDVTSTVQGVESLEPITLGAVLIAILVFIITTQLVRNLPALLE LALLQHLDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALGVGLGFG LQEIFANFISGLIILFEKPIRIGDTVTIRDLTGSVTKINTRATTISDWDRKEIIVPNK AFITEQFINWSLSDSVTRVVLTIPAPADANSEEVTQILLTAAQRCSLVLDNPPPEIFL VDLQQGIQIFELRIYAAEMGHRMPLRHEIHQLILAGFREHGIDMPFPPFQMRLESLGG KQTGRTLTSAGKTSRPAGSL" misc_feature complement(4589252..4592575) /gene="yjeP" /locus_tag="STM4347" /note="putative mechanosensitive channel protein; Provisional; Region: PRK10929" /db_xref="CDD:236798" regulatory complement(4592582..4592587) /regulatory_class="ribosome_binding_site" /gene="yjeP" /locus_tag="STM4347" /note="putative RBS for yjeP; RegulonDB:STMS1H004235" gene complement(4592594..4593574) /gene="psd" /locus_tag="STM4348" /db_xref="GeneID:1255874" CDS complement(4592594..4593562) /gene="psd" /locus_tag="STM4348" /EC_number="4.1.1.65" /note="similar to E. coli phosphatidylserine decarboxylase; phospholipid synthesis (AAC77120.1); Blastp hit to AAC77120.1 (322 aa), 93% identity in aa 1 - 320" /codon_start=1 /transl_table=11 /product="phosphatidylserine decarboxylase" /protein_id="NP_463212.1" /db_xref="GeneID:1255874" /translation="MLNSFKLSLQYILPKLWLTRLAGWGASKRAGWLTKLVIDLFVKY YKVDMTEAQKPDTASYRTFNDFFVRPLRDDVRPLNTDPNILVMPADGVISQLGRIEED KILQAKGHNYSLEALLAGNYLMADKFRNGTFVTTYLSPRDYHRVHMPCNGILREMIYV PGDLFSVNHLTAQNVPNLFARNERVICLFDTEFGPMAQILVGATIVGSIETVWAGTIT PPREGIIKRWTWPEGEHEGSVALLKGQEMGRFKLGSTVINLFAPGKVNLIASLASLSV TKIGQPLATSTETFVAPEVEPAPLPAEEIKAEHDASPLVDNKKDDT" misc_feature complement(4592696..4593562) /gene="psd" /locus_tag="STM4348" /note="phosphatidylserine decarboxylase; Reviewed; Region: psd; PRK00044" /db_xref="CDD:234591" regulatory complement(4593569..4593574) /regulatory_class="ribosome_binding_site" /gene="psd" /locus_tag="STM4348" /note="putative RBS for psd; RegulonDB:STMS1H004236" gene complement(4593654..4594730) /gene="yjeQ" /locus_tag="STM4349" /db_xref="GeneID:1255875" CDS complement(4593654..4594730) /gene="yjeQ" /locus_tag="STM4349" /note="similar to E. coli orf, hypothetical protein (AAC77121.1); Blastp hit to AAC77121.1 (337 aa), 94% identity in aa 1 - 337" /codon_start=1 /transl_table=11 /product="putative GTPase" /protein_id="NP_463213.3" /db_xref="GeneID:1255875" /translation="MGDQEPVRLSKNKLSKGQQRRVNANHQRRLKTSAEKADYDDNLF GEPAEGIVISRFGMHADVESADGEVHRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVK GIVEAVHERTSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNIIDRYLVGCETLQ VEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRIS IFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSP GVREFGLWHLEPEQITQGFVEFHDYLGHCKYRDCKHDADPGCAIREAVENGAIAETRF ENYHRILESMAQVKTRKNFSDTDD" misc_feature complement(4593657..4594703) /gene="yjeQ" /locus_tag="STM4349" /note="small ribosomal subunit biogenesis GTPase RsgA; Region: PRK12288" /db_xref="CDD:237039" gene 4594801..4595358 /gene="orn" /locus_tag="STM4350" /db_xref="GeneID:1255876" regulatory 4594801..4594806 /regulatory_class="ribosome_binding_site" /gene="orn" /locus_tag="STM4350" /note="putative RBS for orn; RegulonDB:STMS1H004237" CDS 4594813..4595358 /gene="orn" /locus_tag="STM4350" /EC_number="3.1.-.-" /note="similar to E. coli orf, hypothetical protein (AAC77122.1); Blastp hit to AAC77122.1 (204 aa), 94% identity in aa 24 - 204" /codon_start=1 /transl_table=11 /product="oligoribonuclease" /protein_id="NP_463214.1" /db_xref="GeneID:1255876" /translation="MSADENNLIWIDLEMTGLDPERDRIIEIATLVTDASLNILAEGP TIAVHQSDAQLALMDDWNVRTHTGSGLVDRVKASTMGERDAELATIEFLKTWVPAGKS PICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILAGFTKQGTHQA MDDIRESVAELAYYREHFIKL" misc_feature 4594822..4595355 /gene="orn" /locus_tag="STM4350" /note="oligoribonuclease; Provisional; Region: PRK05359" /db_xref="CDD:235429" misc_feature order(4594846..4594857,4594861..4594863,4595131..4595136, 4595140..4595148,4595284..4595286,4595299..4595301) /gene="orn" /locus_tag="STM4350" /note="putative active site [active]" /db_xref="CDD:99838" misc_feature order(4594846..4594857,4594861..4594863,4595131..4595136, 4595140..4595145,4595284..4595286,4595299..4595301) /gene="orn" /locus_tag="STM4350" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:99838" misc_feature order(4594846..4594848,4594852..4594854,4595146..4595148, 4595284..4595286,4595299..4595301) /gene="orn" /locus_tag="STM4350" /note="catalytic site [active]" /db_xref="CDD:99838" misc_feature order(4594915..4594917,4595140..4595145,4595152..4595154, 4595161..4595163,4595200..4595205,4595209..4595211, 4595218..4595220,4595227..4595229,4595242..4595247, 4595338..4595340,4595344..4595349) /gene="orn" /locus_tag="STM4350" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:99838" gene complement(4595420..4596166) /locus_tag="STM4351" /db_xref="GeneID:1255877" CDS complement(4595420..4596160) /locus_tag="STM4351" /note="similar to E. coli arginine 3rd transport system periplasmic binding protein (AAC73947.1); Blastp hit to AAC73947.1 (243 aa), 57% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="putative arginine-binding periplasmic protein" /protein_id="NP_463215.3" /db_xref="GeneID:1255877" /translation="MKKKLIVMLLASLSVHAASVSARTLHFGTSATYAPYEFVDADNK IVGFDIDVANAVCKEMQAECSFTNQSFDSLIPSLRFKKFDAVIAGMDMTPKREQQVSF SQPYYEGLSAVVVTRKGAYHTFADLKGKKVGLENGTTHQRYLQDKQQAITPVAYDSYL NAFTDLKNNRLEGVFGDVAAIGKWLKNNPDYAIMDERASDPDYYGKGLGIAVRKDNDA LLQEINAALDKVKASPEYAQMQEKWFTQ" misc_feature complement(4595429..4596097) /locus_tag="STM4351" /note="Substrate binding domain of arginine-specific ABC transporter; type 2 periplasmic-binding protein fold; Region: PBP2_Arg_STM4351; cd13700" /db_xref="CDD:270418" misc_feature complement(order(4595630..4595632,4595741..4595749, 4595756..4595758,4595873..4595875,4595888..4595893, 4595897..4595899,4595948..4595950,4596062..4596064, 4596071..4596073)) /locus_tag="STM4351" /note="ligand binding site [chemical binding]; other site" /db_xref="CDD:270418" regulatory complement(4596161..4596166) /regulatory_class="ribosome_binding_site" /locus_tag="STM4351" /note="putative RBS for STM4351; RegulonDB:STMS1H004238" gene 4596428..4596500 /gene="glyV" /locus_tag="STM4352" /db_xref="GeneID:1255878" tRNA 4596428..4596500 /gene="glyV" /locus_tag="STM4352" /product="tRNA-Gly" /db_xref="GeneID:1255878" gene 4596660..4596732 /gene="glyX" /locus_tag="STM4353" /db_xref="GeneID:1255879" tRNA 4596660..4596732 /gene="glyX" /locus_tag="STM4353" /product="tRNA-Gly" /db_xref="GeneID:1255879" gene 4596892..4596964 /gene="glyY" /locus_tag="STM4354" /db_xref="GeneID:1255880" tRNA 4596892..4596964 /gene="glyY" /locus_tag="STM4354" /product="tRNA-Gly" /db_xref="GeneID:1255880" gene complement(4597245..4598413) /gene="yjeS" /locus_tag="STM4355" /db_xref="GeneID:1255881" CDS complement(4597245..4598399) /gene="yjeS" /locus_tag="STM4355" /note="similar to E. coli orf, hypothetical protein (AAC77123.1); Blastp hit to AAC77123.1 (379 aa), 90% identity in aa 1 - 379" /codon_start=1 /transl_table=11 /product="putative Fe-S protein" /protein_id="NP_463216.3" /db_xref="GeneID:1255881" /translation="MLWSIMSKPLDLNQLAQNIKQWGLELGFQQVGITDTDLRASEPA LQAWLDKQYHGEMAWMARHGMMRARPHELLPGTLRVISVRMNYLPANAAFASTLKDPT LGYVSRYALGRDYHKLLRSRLKKLGEQIQQYCGSLNFRPFVDSAPILERPLAEKAGLG WTGKHSLILNREAGSFFFLGELLIDLPLPVDQPVEEGCGKCVACMTICPTGAIVEPYT VDARRCISYLTIELEGAIPEAFRPLIGNRIYGCDDCQLICPWNRYSQLTDEADFSPRK ALHNPDLLELFSWSEAQFLKVTEGSAIRRIGHLRWLRNVAVALGNAPWSNAVITALES RKGEHPLLDEHIEWAIAQQIEKRNACIIEVQLPKKQRLVRVIEKGLVRDA" misc_feature complement(4597341..4598345) /gene="yjeS" /locus_tag="STM4355" /note="epoxyqueuosine reductase; Region: TIGR00276" /db_xref="CDD:272993" gene 4598214..4599930 /gene="yjeF" /locus_tag="STM4356" /db_xref="GeneID:1255882" regulatory 4598214..4598222 /regulatory_class="minus_35_signal" /gene="yjeF" /locus_tag="STM4356" /note="putative -35_signal for yjeF; RegulonDB:STMLTH004670" regulatory 4598240..4598248 /regulatory_class="minus_10_signal" /gene="yjeF" /locus_tag="STM4356" /note="putative -10_signal for yjeF; RegulonDB:STMLTH004670" regulatory 4598370..4598375 /regulatory_class="ribosome_binding_site" /gene="yjeF" /locus_tag="STM4356" /note="putative RBS for yjeF; RegulonDB:STMS1H004242" CDS 4598383..4599930 /gene="yjeF" /locus_tag="STM4356" /note="similar to E. coli orf, hypothetical protein (AAC77124.1); Blastp hit to AAC77124.1 (515 aa), 82% identity in aa 1 - 514" /codon_start=1 /transl_table=11 /product="putative sugar kinase" /protein_id="NP_463217.1" /db_xref="GeneID:1255882" /translation="MMDHNMKKNPVSIPHSIWPADDIKRLERDAADAFGLTLYELMLR AGDAAFRVARDSYPDTRHWLVLCGHGNNGGDGYVVARLAQAAGISVTLLAQESDKPLP EEAAQARDAWLNAGGIIHAADIIWPEATDLIIDALLGTGIAQAPRDPVAGLIEQANAH PAPVVAVDIPSGLLAQTGATPGAVISAAHTVTFIALKPGLLTGKARDVTGILHYDALG LEGWLASQTPPLRRFDATQLGQWLTPRRPTSHKGDHGRLAIIGGDQGTAGAIRMAGEA ALRTGAGLVRVLTRGENIAPLLTARPELMVHELTPQSLEESLTWADVVVIGPGLGQQE WGKKALQKVENVRKPMLWDADALNLLAINPDKRHNRVITPHPGEAARLLGCSVAEIES DRLLSAQRLVKRYGGVVVLKGAGTIIAAEHHPLAIIDAGNAGMASGGMGDVLSGIIGA LLGQKFTPYDAACVGCVAHGAAADLLAARYGARGMLATDLFTTLRRIVNPDVIDVNHD ESSNSAT" misc_feature 4598383..4599906 /gene="yjeF" /locus_tag="STM4356" /note="putative carbohydrate kinase; Provisional; Region: PRK10565" /db_xref="CDD:182554" regulatory complement(4598408..4598413) /regulatory_class="ribosome_binding_site" /gene="yjeS" /locus_tag="STM4355" /note="putative RBS for yjeS; RegulonDB:STMS1H004241" gene 4599902..4600363 /gene="yjeE" /locus_tag="STM4357" /db_xref="GeneID:1255883" CDS 4599902..4600363 /gene="yjeE" /locus_tag="STM4357" /note="similar to E. coli orf, hypothetical protein (AAC77125.1); Blastp hit to AAC77125.1 (153 aa), 93% identity in aa 1 - 152" /codon_start=1 /transl_table=11 /product="putative nucleotide-binding protein" /protein_id="NP_463218.1" /db_xref="GeneID:1255883" /translation="MMNRVIPLPDEQATLDLGQRVANACDGATVIYLYGDLGAGKTTF SRGFLQALGHNGNVKSPTYTLVEPYAIDNMMVYHFDLYRLADPEELEFMGIRDYFAND AICLVEWPQQGKGVLPDPDVEIHIDYQAQGREARVSAVSSSGHSLLARLAD" misc_feature 4599902..4600360 /gene="yjeE" /locus_tag="STM4357" /note="tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE; Region: PRK10646" /db_xref="CDD:182615" gene 4600369..4601699 /gene="amiB" /locus_tag="STM4358" /db_xref="GeneID:1255884" regulatory 4600369..4600374 /regulatory_class="ribosome_binding_site" /gene="amiB" /locus_tag="STM4358" /note="putative RBS for amiB; RegulonDB:STMS1H004243" CDS 4600380..4601699 /gene="amiB" /locus_tag="STM4358" /EC_number="3.5.1.28" /note="murein hydrolase; N-acetylmuramoyl-L-alanine amidase AMIB. (SW:AMIB_SALTY)" /codon_start=1 /transl_table=11 /product="N-acetylmuramoyl-l-alanine amidase II" /protein_id="NP_463219.1" /db_xref="GeneID:1255884" /translation="MIYRIKNAVIAALILLCAQAGAASLSDIQVSNGEQQARITLSFI GEPEYAYSQDGKRTVALDIRQTGVIQGLPLQFSGNNLVKTIRAGTPKDAQSLRLLVDL TENGKTEAVKRQNGGNYTVIFTINADVPPPPPPVVAKRVESAPRPTEPARNPFKSSDD RLTGVTSSNTVTRPAARASAGAGDKVVIAIDAGHGGQDPGAIGPGGTREKNVTIAIAR KLRTLLNNDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPNRDATGAS VWVLSNRRANSEMANWLEQHEKQSELLGGAGDVLANSQSDPYLSQAVLDLQFGHSQRV GYDVATNVLSQLDGVGSLHKRRPEHASLGVLRSPDIPSILVETGFISNHGEERLLASD RYQQQIADAIYRGLRKYFAAHPIQSAPQGGPGQTASTNQPGAITAAN" misc_feature 4600380..4601696 /gene="amiB" /locus_tag="STM4358" /note="N-acetylmuramoyl-l-alanine amidase II; Provisional; Region: PRK10431" /db_xref="CDD:236692" gene 4601698..4603565 /gene="mutL" /locus_tag="STM4359" /db_xref="GeneID:1255885" regulatory 4601698..4601703 /regulatory_class="ribosome_binding_site" /gene="mutL" /locus_tag="STM4359" /note="putative RBS for mutL; RegulonDB:STMS1H004244" CDS 4601709..4603565 /gene="mutL" /locus_tag="STM4359" /note="stimulates binding of Vsr and MutS to heteroduplex DNA; DNA mismatch repair protein MUTL. (SW:MUTL_SALTY)" /codon_start=1 /transl_table=11 /product="enzyme in methyl-directed mismatch repair" /protein_id="NP_463220.1" /db_xref="GeneID:1255885" /translation="MPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRVDI DIERGGAKLIRIRDNGCGIKKEELALALARHATSKIASLDDLEAIISLGFRGEALASI SSVSRLTLTSRTAEQAEAWQAYAEGRDMDVTVKPAAHPVGTTLEVLDLFYNTPARRKF MRTEKTEFNHIDEIIRRIALARFDVTLNLSHNGKLVRQYRAVAKDGQKERRLGAICGT PFLEQALAIEWQHGDLTLRGWVADPNHTTTALTEIQYCYVNGRMMRDRLINHAIRQAC EDKLGADQQPAFVLYLEIDPHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQT ETALPLEEIAPAPRHVQENRIAAGRNHFAVPAEPTAAREPATPRYSGGASGGNGGRQS AGGWPHAQPGYQKQQGEVYRTLLQTPTASPAPESVTPALDGHSQSFGRVLTIVGGDCA LLEHAGTIQLLSLPVAERWLRQAQLTPGQSPVCAQPLLIPLRLKVSADEKAALQKAQS LLGELGIEFQSDAQHVTIRAVPLPLRQQNLQILIPELIGYLAQQTTFATVNIAQWIAR NVQSEHPQWSMAQAISLLADVERLCPQLVKAPPGGLLQPVDLHSAMNALKHE" misc_feature 4601709..4603562 /gene="mutL" /locus_tag="STM4359" /note="DNA mismatch repair endonuclease MutL; Region: mutL; PRK00095" /db_xref="CDD:234630" gene 4603551..4604508 /gene="miaA" /locus_tag="STM4360" /db_xref="GeneID:1255886" regulatory 4603551..4603556 /regulatory_class="ribosome_binding_site" /gene="miaA" /locus_tag="STM4360" /note="putative RBS for miaA; RegulonDB:STMS1H004245" CDS 4603558..4604508 /gene="miaA" /locus_tag="STM4360" /EC_number="2.5.1.75" /note="tRNA delta(2)-isopentenylpyrophosphate transferase. (SW:MIAA_SALTY)" /codon_start=1 /transl_table=11 /product="delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase" /protein_id="NP_463221.1" /db_xref="GeneID:1255886" /translation="MNDVSKASLPKAIFLMGPTASGKTALAIELRKVLPVELISVDSA LIYRGMDIGTAKPNADELKAAPHRLLDIRDPSQAYSAADFRRDALAQMAEITAAGRIP LLVGGTMLYFKALLEGLSPLPSADPEVRSRIEQQAAELGWEALHQQLQEIDPVAAARI HPNDPQRLSRALEVFFISGKTLTELTQTSGDALPYQVHQFAIAPASRELLHQRIELRF HQMLASGFEAEVRALFARGDLHTDLPSIRCVGYRQMWSYIEGEISYDEMVYRGVCATR QLAKRQMTWLRGWEGVRWLDSENPDRARKEVLQVVGAIAD" misc_feature 4603585..4604505 /gene="miaA" /locus_tag="STM4360" /note="tRNA A37 N6-isopentenylltransferase MiaA [Translation, ribosomal structure and biogenesis]; Region: MiaA; COG0324" /db_xref="CDD:440093" gene 4604579..4604899 /gene="hfq" /locus_tag="STM4361" /db_xref="GeneID:1255887" regulatory 4604579..4604584 /regulatory_class="ribosome_binding_site" /gene="hfq" /locus_tag="STM4361" /note="putative RBS for hfq; RegulonDB:STMS1H004246" CDS 4604591..4604899 /gene="hfq" /locus_tag="STM4361" /note="growth-related protein; host factor-I protein (HF-I). (SW:HFQ_SALTY)" /codon_start=1 /transl_table=11 /product="host factor I for bacteriophage Q beta replication" /protein_id="NP_463222.1" /db_xref="GeneID:1255887" /translation="MAKGQSLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVI LLKNTVSQMVYKHAISTVVPSRPVSHHSNNAGGGASNNYHHGSNAQGSTAQQDSEETE " misc_feature 4604591..4604818 /gene="hfq" /locus_tag="STM4361" /note="RNA-binding protein Hfq; Provisional; Region: hfq; PRK00395" /db_xref="CDD:179001" misc_feature order(4604606..4604614,4604621..4604623,4604666..4604680, 4604702..4604710,4604714..4604719,4604738..4604782) /gene="hfq" /locus_tag="STM4361" /note="hexamer interface [polypeptide binding]; other site" /db_xref="CDD:212463" misc_feature order(4604654..4604674,4604678..4604731) /gene="hfq" /locus_tag="STM4361" /note="Sm1 motif; other site" /db_xref="CDD:212463" misc_feature order(4604663..4604665,4604675..4604689,4604726..4604728, 4604744..4604746,4604768..4604773,4604777..4604779) /gene="hfq" /locus_tag="STM4361" /note="RNA binding site [nucleotide binding]; other site" /db_xref="CDD:212463" misc_feature 4604741..4604776 /gene="hfq" /locus_tag="STM4361" /note="Sm2 motif; other site" /db_xref="CDD:212463" gene 4604959..4606251 /gene="hflX" /locus_tag="STM4362" /db_xref="GeneID:1255888" regulatory 4604959..4604964 /regulatory_class="ribosome_binding_site" /gene="hflX" /locus_tag="STM4362" /note="putative RBS for hflX; RegulonDB:STMS1H004247" CDS 4604971..4606251 /gene="hflX" /locus_tag="STM4362" /note="ogether with HflCK possibly involved in phage lambda cII repressor stability; similar to E. coli GTP - binding subunit of protease specific for phage lambda cII repressor (AAC77130.1); Blastp hit to AAC77130.1 (426 aa), 96% identity in aa 1 - 426" /codon_start=1 /transl_table=11 /product="putative GTP-ase" /protein_id="NP_463223.1" /db_xref="GeneID:1255888" /translation="MFDRYDAGEQAVLVHIYFSQDKDMEDLQEFESLVSSAGVEAMQV ITGSRKAPHPKYFVGEGKAVEIAEAVKATGAAVVLFDHALSPAQERNLERLCECRVID RTGLILDIFAQRARTHEGKLQVELAQLRHLATRLVRGWTHLERQKGGIGLRGPGETQL ETDRRLLRNRIVQIQSRLEKVEKQREQGRQSRIKADVPTVSLVGYTNAGKSTLFNQIT EARVYAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAFKATLQETRQ ATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLMVMNKIDMLDDFEPRIDRDEE NKPIRVWLSAQSGVGIPQLFQALTERLSGEVAQHTLRLPPQEGRLRSRFYQLQAIEKE WMEEDGSVSLQVRMPIVDWRRLCKQEPALIEYVI" misc_feature 4604971..4606248 /gene="hflX" /locus_tag="STM4362" /note="GTPase HflX; Provisional; Region: PRK11058" /db_xref="CDD:182934" gene 4606453..4607725 /gene="hflK" /locus_tag="STM4363" /db_xref="GeneID:1255889" regulatory 4606453..4606458 /regulatory_class="ribosome_binding_site" /gene="hflK" /locus_tag="STM4363" /note="putative RBS for hflK; RegulonDB:STMS1H004248" CDS 4606466..4607725 /gene="hflK" /locus_tag="STM4363" /note="associates with HflC; similar to E. coli protease specific for phage lambda cII repressor (AAC77131.1); Blastp hit to AAC77131.1 (419 aa), 93% identity in aa 1 - 419" /codon_start=1 /transl_table=11 /product="component of modulator for protease specific for FtsH phage lambda cII repressor" /protein_id="NP_463224.1" /db_xref="GeneID:1255889" /translation="MAWNQPGNNGQDRDPWGSSKPGSNSGGNGNKGGRDQGPPDLDDI FRKLSKKLGGFGGGKGTGSGGGSSSQGPRPQLGGRIVAIAAAAVVIIWAASGFYTIKE AERGVVTRFGKFSHLVEPGLNWKPTFIDDVTPVNVEAVRELAASGVMLTSDENVVRVE MNVQYRVTDPQKYLFSVTSPDDSLRQATDSALRGVIGKYTMDRILTEGRTVIRSDTQR ELEETIKPYNMGITLLDVNFQAARPPEEVKAAFDDAIAARENEQQYIREAEAYTNEVQ PRANGQAQRILEEARAYKTQTILEAQGEVARFAKILPEYKAAPQITRERLYIETMEKV LSHTRKVLVNDKSGNLMVLPLDQMLKGGNAPAAKSDNSASNLLRLPPSTKSNASGASN TSSSNQGDIMDQRRANAQRNDYQRQGE" misc_feature 4606466..4607722 /gene="hflK" /locus_tag="STM4363" /note="FtsH protease activity modulator HflK; Region: PRK10930" /db_xref="CDD:236799" gene 4607714..4608732 /gene="hflC" /locus_tag="STM4364" /db_xref="GeneID:1255890" regulatory 4607714..4607719 /regulatory_class="ribosome_binding_site" /gene="hflC" /locus_tag="STM4364" /note="putative RBS for hflC; RegulonDB:STMS1H004249" CDS 4607728..4608732 /gene="hflC" /locus_tag="STM4364" /EC_number="3.4.-.-" /note="associates with HflK; similar to E. coli protease specific for phage lambda cII repressor (AAC77132.1); Blastp hit to AAC77132.1 (334 aa), 95% identity in aa 1 - 334" /codon_start=1 /transl_table=11 /product="component of modulator for protease specific for FtsH phage lambda cII repressor" /protein_id="NP_463225.1" /db_xref="GeneID:1255890" /translation="MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDENK PLVYAPGLHFKIPFIESVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSR YYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSA GTDDEVATPAADDAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTE VSEAIYNRMRAEREAVARRHRSQGQEEAEKLRAAADYEVTKTLAEAERQGRIMRGEGD AEAAKLFADAFSQDPDFYAFIRSLRAYEKSFEGNQDVMVLSPDSDFFRYMKTPSSTTR " misc_feature 4607728..4608729 /gene="hflC" /locus_tag="STM4364" /note="protease modulator HflC; Region: PRK11029" /db_xref="CDD:182913" gene 4608800..4609008 /gene="yjeT" /locus_tag="STM4365" /db_xref="GeneID:1255891" regulatory 4608800..4608805 /regulatory_class="ribosome_binding_site" /gene="yjeT" /locus_tag="STM4365" /note="putative RBS for yjeT; RegulonDB:STMS1H004250" CDS 4608811..4609008 /gene="yjeT" /locus_tag="STM4365" /note="similar to E. coli orf, hypothetical protein (AAC77133.1); Blastp hit to AAC77133.1 (65 aa), 89% identity in aa 1 - 65" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463226.1" /db_xref="GeneID:1255891" /translation="MNSTIWLALALVLVLEGLGPMLYPGAWKKMVSALAQLPENVLRR FGGGLVVAGVVVYYMLRKTIG" misc_feature 4608811..>4608945 /gene="yjeT" /locus_tag="STM4365" /note="Uncharacterized conserved protein YjeT, DUF2065 family [Function unknown]; Region: yjeT; COG3242" /db_xref="CDD:442474" gene 4609047..4610409 /gene="purA" /locus_tag="STM4366" /db_xref="GeneID:1255892" regulatory 4609047..4609055 /regulatory_class="minus_35_signal" /gene="purA" /locus_tag="STM4366" /note="putative -35_signal for purA; RegulonDB:STMLTH004671" regulatory 4609073..4609081 /regulatory_class="minus_10_signal" /gene="purA" /locus_tag="STM4366" /note="putative -10_signal for purA; RegulonDB:STMLTH004671" regulatory 4609095..4609100 /regulatory_class="ribosome_binding_site" /gene="purA" /locus_tag="STM4366" /note="putative RBS for purA; RegulonDB:STMS1H004251" CDS 4609111..4610409 /gene="purA" /locus_tag="STM4366" /EC_number="6.3.4.4" /note="similar to E. coli adenylosuccinate synthetase (AAC77134.1); Blastp hit to AAC77134.1 (432 aa), 99% identity in aa 1 - 432" /codon_start=1 /transl_table=11 /product="adenylosuccinate synthetase" /protein_id="NP_463227.1" /db_xref="GeneID:1255892" /translation="MGNNVVVLGTQWGDEGKGKIVDLLTERAKYVVRYQGGHNAGHTL VINGEKTVLHLIPSGILRENVTSIIGNGVVLSPSALMKEMKELEDRGIPVRERLLLSE ACPLILDYHVALDNAREKARGAKAIGTTGRGIGPAYEDKVARRGLRVGDLFDKETFAE KLKEVMEYHNFQLVNYYKAEAVDYQKVLDDTMAVADILTSMVVDVSDLLDQARQRGDF VMFEGAQGTLLDIDHGTYPYVTSSNTTAGGVATGSGLGPRYVDYVLGILKAYSTRVGA GPFPTELFDETGEFLCKQGNEYGATTGRRRRTGWLDTVAVRRAVQLNSLSGFCLTKLD VLDGLKEVKLCVAYRMPDGREVTTTPLAADDWKGVEPIYETMPGWSESTFGVKDRSGL PQAALNYIKRIEELTGVPIDIISTGPDRTETMILRDPFDA" misc_feature 4609114..4610406 /gene="purA" /locus_tag="STM4366" /note="adenylosuccinate synthetase; Provisional; Region: PRK01117" /db_xref="CDD:234904" misc_feature order(4609144..4609167,4609225..4609239,4609492..4609500, 4609780..4609785,4609795..4609797,4609825..4609830, 4609930..4609935,4610005..4610016,4610020..4610022, 4610026..4610028,4610104..4610106,4610110..4610115, 4610353..4610364) /gene="purA" /locus_tag="STM4366" /note="active site" /db_xref="CDD:349762" misc_feature order(4609321..4609323,4609417..4609419,4609423..4609425, 4609462..4609464,4609489..4609491,4609513..4609515, 4609522..4609548,4609552..4609554,4609726..4609731, 4609738..4609740,4609801..4609812,4609816..4609821, 4609825..4609827,4609831..4609833,4609849..4609854, 4609858..4609863,4609870..4609875,4610062..4610064, 4610071..4610082) /gene="purA" /locus_tag="STM4366" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349762" gene 4610607..4611041 /gene="yjeB" /locus_tag="STM4367" /db_xref="GeneID:1255893" regulatory 4610607..4610612 /regulatory_class="ribosome_binding_site" /gene="yjeB" /locus_tag="STM4367" /note="putative RBS for yjeB; RegulonDB:STMS1H004252" CDS 4610616..4611041 /gene="yjeB" /locus_tag="STM4367" /note="similar to E. coli orf, hypothetical protein (AAC77135.1); Blastp hit to AAC77135.1 (141 aa), 94% identity in aa 1 - 141" /codon_start=1 /transl_table=11 /product="putative negative regulator" /protein_id="NP_463228.1" /db_xref="GeneID:1255893" /translation="MQLTSFTDYGLRALIYMASLPDGRMTSISEVTEVYGVSRNHMVK IINQLSRAGFVTAVRGKNGGIRLGKPANTICIGDVVRELEPLSLVNCSSEFCHITPAC RLKQALSKAVQSFLKELDNYTLADLVEENQPLYKLLLVE" misc_feature 4610616..4611038 /gene="yjeB" /locus_tag="STM4367" /note="HTH-type transcriptional repressor NsrR; Region: PRK11014" /db_xref="CDD:236820" gene 4611068..4613517 /gene="vacB" /locus_tag="STM4368" /db_xref="GeneID:1255894" regulatory 4611068..4611073 /regulatory_class="ribosome_binding_site" /gene="vacB" /locus_tag="STM4368" /note="putative RBS for vacB; RegulonDB:STMS1H004253" CDS 4611079..4613517 /gene="vacB" /locus_tag="STM4368" /EC_number="3.1.-.-" /note="similar to E. coli putative enzyme (AAC77136.1); Blastp hit to AAC77136.1 (827 aa), 95% identity in aa 15 - 827" /codon_start=1 /transl_table=11 /product="putative exoribonuclease" /protein_id="NP_463229.1" /db_xref="GeneID:1255894" /translation="MSQDPFQEREAEKYANPIPSREFILEHLTKREKPASREELAVEL NIEGEEQLEALRRRLRAMERDGQLVFTRRQCYALPERLDLLKGTVIGHRDGYGFLRVE GRKDDLYLSSEQMKTCIHGDQVLAQPLGADRKGRREARIVRVLVPKTSQIVGRYFTDA GVGFVVPDDSRLSFDILIPPEDVMGARMGFVVVVELTQRPTRRTKAVGKIVEVLGDNM GTGMAVDMALRTHEIPYIWPQAVEQQVAGLKEEVPEEAKVGRVDLRDLPLVTIDGEDA RDFDDAVYCEKKRGGGWRLWVAIADVSYYVRPPTPLDREARNRGTSVYFPSQVVPMLP EVLSNGLCSLNPQVDRLCMVCEMTISAKGRLTGYKFYEAVMSSHARLTYTKVWHMLQG DQDLREQYAPLVKHIEELHNLYKVLDKAREERGGISFESEEAKFIFNAERRIERIEQT QRNDAHKLIEECMIMANISAARFVEKAKEPALFRIHDKPTTEAITSFRSVLAELGLEL PGGNKPEPRDYAELLESIADRPDAEMLQTMLLRSMKQAIYDPENRGHFGLALQSYAHF TSPIRRYPDLSLHRAIKYLLAKEQGNKGNTTETGGYHYSMEEMLQLGQHCSMAERRAD EATRDVSDWLKCDFMLDQVGNVFKGVIASVTGFGFFVRLDELFIDGLVHVSSLDNDYY RFDQVGQRLIGESGGQTYRLGDRVEVRVEAVNMDERKIDFSLISSERAPRNVGKTARE KAKKGESKNAGKRRQVGKKVNFEPDSAFRGEKKAKPKAAKKDARKAKKPSAKTQKIAA ATKAKRAAKKKAAE" misc_feature 4611079..4613514 /gene="vacB" /locus_tag="STM4368" /note="ribonuclease R; Region: PRK11642" /db_xref="CDD:236944" gene 4613595..4614339 /gene="yjfH" /locus_tag="STM4369" /db_xref="GeneID:1255895" regulatory 4613595..4613600 /regulatory_class="ribosome_binding_site" /gene="yjfH" /locus_tag="STM4369" /note="putative RBS for yjfH; RegulonDB:STMS1H004254" CDS 4613608..4614339 /gene="yjfH" /locus_tag="STM4369" /EC_number="2.1.1.-" /note="similar to E. coli orf, hypothetical protein (AAC77137.1); Blastp hit to AAC77137.1 (243 aa), 97% identity in aa 1 - 243" /codon_start=1 /transl_table=11 /product="putative tRNA/rRNA methyltransferase" /protein_id="NP_463230.1" /db_xref="GeneID:1255895" /translation="MSEMIYGIHAVQALLERAPERFQEVFILKGREDKRLLPLIHALE SQGVVIQLANRQYLDEKSDGAVHQGIIARVKPGRQYQENDLPDLIALHDRPFLLILDG VTDPHNLGACLRSADAAGVHAVIVPKDRSAQLNATAKKVACGAAESVPLIRVTNLART MRMLQEENIWIVGTAGEADHTLYQSKMPGRMALVMGAEGEGMRRLTREHCDELISIPM AGSVSSLNVSVATGICLFEAVRQRT" misc_feature 4613608..4614333 /gene="yjfH" /locus_tag="STM4369" /note="23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB; Region: PRK11181" /db_xref="CDD:183021" gene 4614460..4614875 /gene="yjfI" /locus_tag="STM4370" /db_xref="GeneID:1255896" regulatory 4614460..4614465 /regulatory_class="ribosome_binding_site" /gene="yjfI" /locus_tag="STM4370" /note="putative RBS for yjfI; RegulonDB:STMS1H004256" CDS 4614471..4614875 /gene="yjfI" /locus_tag="STM4370" /note="similar to E. coli orf, hypothetical protein (AAC77138.1); Blastp hit to AAC77138.1 (133 aa), 64% identity in aa 1 - 132" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463231.1" /db_xref="GeneID:1255896" /translation="MAWTPRTLADALNNIAELDIDIENNESSLIIKMNDYGDLPLAVL FTSQQIVIETYICPVNTIRDTAEFNLFLLRNQKVLPLSSVGITQVKQEEYYVAFGALS LNSSLADVMLEITTLVENALDIAEITQVYSQE" misc_feature 4614474..4614866 /gene="yjfI" /locus_tag="STM4370" /note="Uncharacterized protein conserved in bacteria (DUF2170); Region: DUF2170; pfam09938" /db_xref="CDD:430942" gene 4614878..4615588 /gene="yjfJ" /locus_tag="STM4371" /db_xref="GeneID:1255897" regulatory 4614878..4614883 /regulatory_class="ribosome_binding_site" /gene="yjfJ" /locus_tag="STM4371" /note="putative RBS for yjfJ; RegulonDB:STMS1H004257" CDS 4614890..4615588 /gene="yjfJ" /locus_tag="STM4371" /note="IM30; suppresses sigma54-dependent transcription; similar to E. coli putative alpha helical protein (AAC77139.1); Blastp hit to AAC77139.1 (232 aa), 88% identity in aa 1 - 232" /codon_start=1 /transl_table=11 /product="putative phage shock protein A" /protein_id="NP_463232.1" /db_xref="GeneID:1255897" /translation="MGILKSLFTLGKSFVAQAEEAIDEAQGVRMLEQHIRDAKAELDK AGKSRVDLLARVKLSHDKLNDLRERKASLETRALAAMSKNVDAALLNEVAEEIARLEN AILAEEQVLTNLEASRDAVEKAVTATGQRIAQFEQQLEVVKATEAMQRAQQAVTTSTV GAASNVSTAAESLKRLQTRQAERQARLDAAAQLEKVADGRDLDEKLAQAGIGATNKSN AQGVLARLQRQQGE" misc_feature 4614896..4615573 /gene="yjfJ" /locus_tag="STM4371" /note="PspA/IM30 family; Region: PspA_IM30; pfam04012" /db_xref="CDD:461130" gene 4615582..4616658 /locus_tag="STM4372" /db_xref="GeneID:1255898" regulatory 4615582..4615587 /regulatory_class="ribosome_binding_site" /gene="yjfJ" /locus_tag="STM4371" /note="putative RBS for STM4372; RegulonDB:STMS1H004258" CDS 4615588..4616658 /locus_tag="STM4372" /codon_start=1 /transl_table=11 /product="resembles eukaryotic-type potassium channels" /protein_id="NP_463233.1" /db_xref="GeneID:1255898" /translation="MLFTWIVKTCQRHLSRLTWPALLGLFIGQYLLCYLVLRLLRESA LVSQLSDFIYYCSVVGSTLGFGDLSPQTAPGRLFTALWQIPVSVGLFGALMGKVIAQV QGMLAKGITGMGDYRHLHHHMLVIGWRGHQTEKMISLLLYDKRRAFERVLLCELEDIQ HPLPGNNWVDFIRISNFNDPQEHQRMGLEQCQSVIIFARTDEQTFTAALSLADYVPAQ CHIVVYLEDERYAGLLETHCPRMEIVRNLSAEQLSRSIQDPGSSQSVASIMNPMLGDT GFALPVPASVAPMRYGALMRYMKLHHDATVLGISHCKNGRGMELNPVISTEVRGGMWL HLVGNNRILAEEVAWQEIEVPL" misc_feature <4615732..4615896 /locus_tag="STM4372" /note="Ion channel; Region: Ion_trans_2; pfam07885" /db_xref="CDD:462301" gene 4616623..4617314 /gene="yjfK" /locus_tag="STM4373" /db_xref="GeneID:1255899" regulatory 4616623..4616628 /regulatory_class="ribosome_binding_site" /gene="yjfK" /locus_tag="STM4373" /note="putative RBS for yjfK; RegulonDB:STMS1H004259" CDS 4616631..4617314 /gene="yjfK" /locus_tag="STM4373" /note="similar to E. coli orf, hypothetical protein (AAC77140.1); Blastp hit to AAC77140.1 (219 aa), 80% identity in aa 1 - 219" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463234.3" /db_xref="GeneID:1255899" /translation="MARDRGSPMMQFFQRLLGKTSAPAPIRGPLGLHLNAGFTLDTLA FRLLESSLLVALPGEKYTVAAASRIDLGGGSQIFRYYTSGDEFLQINTTGGTDVDDID DIKLFVYEESFGINEERHWRSAIAPAAIGPMTLNWQERRWQRFFNHEEPGNIEPVYML EKVENQQAEKWDVHNFTMGFQRQVTDDAWEYLLLNGEESFNERGEPEWVFSRALGVDI PLTSLTVIG" misc_feature 4616664..4617302 /gene="yjfK" /locus_tag="STM4373" /note="Protein of unknown function (DUF2491); Region: DUF2491; pfam10679" /db_xref="CDD:431431" gene 4617322..4617730 /gene="yjfL" /locus_tag="STM4374" /db_xref="GeneID:1255900" regulatory 4617322..4617327 /regulatory_class="ribosome_binding_site" /gene="yjfL" /locus_tag="STM4374" /note="putative RBS for yjfL; RegulonDB:STMS1H004260" CDS 4617332..4617730 /gene="yjfL" /locus_tag="STM4374" /note="similar to E. coli orf, hypothetical protein (AAC77141.1); Blastp hit to AAC77141.1 (132 aa), 90% identity in aa 1 - 132" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463235.1" /db_xref="GeneID:1255900" /translation="MHILDALLAFCAYFFIGAAMVIVFLFIYSKITPHNEWQLIKNNN TAASLAFSGTLLGYVIPLSSAAINSVSIPDYFAWGGIALVIQLLIYGCVRLYMPTLSE KIIHHNVAAGLFMGTAALAGGIFNAACMTW" misc_feature 4617332..4617727 /gene="yjfL" /locus_tag="STM4374" /note="Uncharacterized membrane protein YjfL, UPF0719 family [Function unknown]; Region: YjfL; COG3766" /db_xref="CDD:442980" gene 4617730..4618378 /gene="yjfM" /locus_tag="STM4375" /db_xref="GeneID:1255901" regulatory 4617730..4617735 /regulatory_class="ribosome_binding_site" /gene="yjfM" /locus_tag="STM4375" /note="putative RBS for yjfM; RegulonDB:STMS1H004261" CDS 4617740..4618378 /gene="yjfM" /locus_tag="STM4375" /note="similar to E. coli orf, hypothetical protein (AAC77142.1); Blastp hit to AAC77142.1 (212 aa), 69% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463236.1" /db_xref="GeneID:1255901" /translation="MAKKRKSRSTSGVGHSAIRRIAEPVNPFERQRNRYTPKCLTLAI MGGAAFFLLKGCGDGGNSDNDGDGTFYATVNDCIDDGNSASVCADGWNNAKTEFYANV PKQLTQERCQTQFGDCYFDITERSWVPVLSGFLLSRAIRQNRDEQYIYSSGGSSYVSR PVWRTTSGDYAWRSGTGKSDTATSPGYITRKASTVSRGGYGRSSSARGHWGG" misc_feature 4617857..4618375 /gene="yjfM" /locus_tag="STM4375" /note="Uncharacterized conserved protein YgiB, UPF0441/DUF1190 family, involved in bioifilm formation [Function unknown]; Region: YgiB; COG5463" /db_xref="CDD:444214" gene 4618366..4619544 /gene="yjfC" /locus_tag="STM4376" /db_xref="GeneID:1255902" regulatory 4618366..4618371 /regulatory_class="ribosome_binding_site" /gene="yjfM" /locus_tag="STM4375" /note="putative RBS for yjfC; RegulonDB:STMS1H004262" CDS 4618381..4619544 /gene="yjfC" /locus_tag="STM4376" /note="similar to E. coli putative synthetase/amidase (AAC77143.1); Blastp hit to AAC77143.1 (387 aa), 89% identity in aa 1 - 387" /codon_start=1 /transl_table=11 /product="putative glutathionylspermidine synthase" /protein_id="NP_463237.1" /db_xref="GeneID:1255902" /translation="MLRHNVPIRRDLDKIACDHGFDFHVIDNEIYWDESRAYRFTLRQ IEEQIEKPTAELHQMCLEIVERAVRDEQSMQQLAIPPLYWDVIAESWRSRDPSLYGRM DFVWCGKDPVKLLEYNADTPTSLYESSYFQWLWLEDARRSGAIPRDADQYNAIQERLI ARFSELYSREPLYFCCCEDTDEDRTTVLYLQDCAQQAGQETRFIYIEELGLGVGGVLT DLDDNVIRRAFKLYPLEWMMRDDNGPLLRKRREQWIEPLWKSILSNKGLLPLLWRFFP GHPNLLPAWFEGEKSLAAPGESSVRKPIYSREGGNVTIFDERQNVIDHADGDYADEPM IYQAFQPLPRFGDSYTLIGSWIIDDEASGMGIREDNTLITKDTSRFVPHYIAG" misc_feature 4618381..4619541 /gene="yjfC" /locus_tag="STM4376" /note="Glutathionylspermidine synthase, CHAP domain [Amino acid transport and metabolism]; Region: Gsp; COG0754" /db_xref="CDD:440517" gene 4619519..4621251 /gene="aidB" /locus_tag="STM4377" /db_xref="GeneID:1255903" regulatory 4619519..4619527 /regulatory_class="minus_35_signal" /gene="yjfC" /locus_tag="STM4376" /note="putative -35_signal for aidB; RegulonDB:STMLTH004672" regulatory 4619546..4619554 /regulatory_class="minus_10_signal" /gene="aidB" /locus_tag="STM4377" /note="putative -10_signal for aidB; RegulonDB:STMLTH004672" regulatory 4619614..4619619 /regulatory_class="ribosome_binding_site" /gene="aidB" /locus_tag="STM4377" /note="putative RBS for aidB; RegulonDB:STMS1H004263" CDS 4619629..4621251 /gene="aidB" /locus_tag="STM4377" /note="adaptive response; transcription activated by Ada; similar to E. coli putative acyl coenzyme A dehydrogenase (AAC77144.1); Blastp hit to AAC77144.1 (546 aa), 85% identity in aa 8 - 544" /codon_start=1 /transl_table=11 /product="putative acyl-CoA dehydrogenase" /protein_id="NP_463238.3" /db_xref="GeneID:1255903" /translation="MSWQTHTVFNQPAPLNNSNLFLSDGALCEAVSREGAGWDSDLLA SIGQQLGTAESLELGRLANAHPPELLRYDPQGQRLDDVRFHPAWHLLMQGLCANRVHN LAWEEEARAGSFVARAARFVLHAQVEAGTLCPVTMTFAATPLLLQMLPATFHDWLAPL RSDRYDSHLLPGGQKRGLLIGMGMTEKQGGSDVLSNTTHAERLADDSYRLVGHKWFFS VPQSDAHLVLAQAKGGLSCFFVPRFLPDGQRNSVRLERLKDKLGNRSNASAEVEFQDA IGWRLGEEGEGIRHILKMGGMTRLDCALGSHGLMRRAFSVAIYHAHQRQAFGKPLIDQ PLMRQTLSRMALCLEGQTALLFRLARAWEQRREAKEALWARLFTPAAKFAICKLGIPF VAEAMEVLGGMGYCEESELPRLYREMPVNSIWEGSGNIMCLDVLRVLTKQHGVYDVLS EAFAEVKGQDRHYDRAVRQLQQRLRKPDEAMGREITQQLFLLGCGAEMLRHASPPLAQ AWCQMMLDTRGEMPLPAQVQNDLLLRATGGLR" misc_feature 4619629..4621242 /gene="aidB" /locus_tag="STM4377" /note="isovaleryl CoA dehydrogenase; Provisional; Region: PRK11561" /db_xref="CDD:183199" gene complement(4621296..4621629) /gene="yjfN" /locus_tag="STM4378" /db_xref="GeneID:1255904" CDS complement(4621296..4621616) /gene="yjfN" /locus_tag="STM4378" /note="similar to E. coli orf, hypothetical protein (AAC77145.1); Blastp hit to AAC77145.1 (100 aa), 80% identity in aa 7 - 100" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463239.1" /db_xref="GeneID:1255904" /translation="MERPVKCGVCNKELTMKQELALSSLLLSAGLVSTTAQSAEFASA DCVTGLNEIGLISVSNVAGNPQDVERIIALKADEQGASWYRIIQMYEEQQSDNWRVQA ILYA" misc_feature complement(4621302..4621469) /gene="yjfN" /locus_tag="STM4378" /note="YdgH/BhsA/McbA-like domain; Region: YdgH_BhsA-like; pfam07338" /db_xref="CDD:429417" regulatory complement(4621624..4621629) /regulatory_class="ribosome_binding_site" /gene="yjfN" /locus_tag="STM4378" /note="putative RBS for yjfN; RegulonDB:STMS1H004264" gene complement(4621702..4622044) /gene="yjfO" /locus_tag="STM4379" /db_xref="GeneID:1255905" CDS complement(4621702..4622031) /gene="yjfO" /locus_tag="STM4379" /note="similar to E. coli orf, hypothetical protein (AAC77146.1); Blastp hit to AAC77146.1 (142 aa), 78% identity in aa 34 - 142" /codon_start=1 /transl_table=11 /product="putative lipoprotein" /protein_id="NP_463240.1" /db_xref="GeneID:1255905" /translation="MIIRKRDRVMRRFASLIAALLLSACSVLQGTPQPAPPVADHPQE IRRDQTQGLQRMGTVSALVRGSPDDAIDEIRAKAVAAKADYYVILMVDETVVTGQWYS QAILYRQ" misc_feature complement(4621705..4622016) /gene="yjfO" /locus_tag="STM4379" /note="biofilm peroxide resistance protein BsmA; Region: PRK14864" /db_xref="CDD:184866" regulatory complement(4622039..4622044) /regulatory_class="ribosome_binding_site" /gene="yjfO" /locus_tag="STM4379" /note="putative RBS for yjfO; RegulonDB:STMS1H004265" gene 4622203..4622964 /gene="yjfP" /locus_tag="STM4380" /db_xref="GeneID:1255906" regulatory 4622203..4622208 /regulatory_class="ribosome_binding_site" /gene="yjfP" /locus_tag="STM4380" /note="putative RBS for yjfP; RegulonDB:STMS1H004266" CDS 4622215..4622964 /gene="yjfP" /locus_tag="STM4380" /note="similar to E. coli orf, hypothetical protein (AAC77147.1); Blastp hit to AAC77147.1 (249 aa), 71% identity in aa 1 - 249" /codon_start=1 /transl_table=11 /product="putative hydrolase of the alpha/beta superfamily" /protein_id="NP_463241.1" /db_xref="GeneID:1255906" /translation="MIAIETRQLAGGVVLHAFPEGKRAVPLPCVVFYHGFTSSSLVYS YFAVALAQAGFRVVMPDAPEHGARFGGDSQGRIHRFWQILHQNMQEFTTLRAAIQAEN WLLDGRLAVGGASMGGMTALGIMTRHREVKCGASLMGSGYFTGLARTLFPPLSPQNPA QQAEFDNIIAPLREWEVTHQLERLADRPLLLWHGQEDDVVPAIETFRLQQALAAAKLD KHVTCLWAAGVRHRITPEALSATVAFFRQHL" misc_feature 4622215..4622961 /gene="yjfP" /locus_tag="STM4380" /note="esterase; Provisional; Region: PRK10566" /db_xref="CDD:182555" gene complement(4622961..4623728) /gene="yjfQ" /locus_tag="STM4381" /db_xref="GeneID:1255907" CDS complement(4622961..4623716) /gene="yjfQ" /locus_tag="STM4381" /note="DeoR family; similar to E. coli putative DEOR-type transcriptional regulator (AAC77148.1); Blastp hit to AAC77148.1 (251 aa), 96% identity in aa 1 - 251" /codon_start=1 /transl_table=11 /product="putative transcriptional repressor" /protein_id="NP_463242.1" /db_xref="GeneID:1255907" /translation="MTEAQRHQILLDMLAQLGFVTVENVIERLGISPATARRDINKLD ESGKLKKVRNGAEAITQQRPRWTPMNLHQAQNHDEKVRIAKAASQLVNPGESVVINCG STAFLLGREMCGKPVQIITNYLPLANYLIDQEHDSVIIMGGQYNKSQSITLSPQGSEN SLYAGHWMFTSGKGLTADGLYKTDMLTAMAEQKMLSVVGKLVALVDSSKIGERAGMLF SRADQIAMLITGKNANPQVLQQLEAQGVSILRV" misc_feature complement(4622964..4623716) /gene="yjfQ" /locus_tag="STM4381" /note="HTH-type transcriptional regulator UlaR; Region: PRK13509" /db_xref="CDD:184100" regulatory complement(4623723..4623728) /regulatory_class="ribosome_binding_site" /gene="yjfQ" /locus_tag="STM4381" /note="putative RBS for yjfQ; RegulonDB:STMS1H004267" gene complement(4623821..4624897) /gene="yjfR" /locus_tag="STM4382" /db_xref="GeneID:1255908" CDS complement(4623821..4624885) /gene="yjfR" /locus_tag="STM4382" /note="similar to E. coli orf, hypothetical protein (AAC77149.1); Blastp hit to AAC77149.1 (356 aa), 97% identity in aa 3 - 356" /codon_start=1 /transl_table=11 /product="putative Zn-dependent hydrolases of the beta-lactamase fold" /protein_id="NP_463243.1" /db_xref="GeneID:1255908" /translation="MSKVQSITRESWILSTFPEWGSWLNEEIEQEQVAPGTFAMWWLG CTGIWLKSEGGTNVCVDFWCGTGKQSHGNPLMKTGHQMQRMAGVKKLQPNLRTTPFVL DPFAIRQIDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPQTCVDLWVGWGVPKER CIVVKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDVRAVNYLFKTPG GNLYHSGDSHYSNYYAKHGNEHQIDVALGSYGENPRGITDKMTSADILRMAESLNTKV VIPFHHDIWSNFQADPQEIRVLWEMKKDRLKYGFKPFIWQVGGKFTWPLDKDNFEYHY PRGFDDCFTIEPDLPFKSFL" misc_feature complement(4623824..4624885) /gene="yjfR" /locus_tag="STM4382" /note="putative L-ascorbate 6-phosphate lactonase; Provisional; Region: PRK11709" /db_xref="CDD:236958" misc_feature complement(order(4624139..4624141,4624208..4624210, 4624271..4624276,4624520..4624525,4624529..4624531, 4624535..4624537)) /gene="yjfR" /locus_tag="STM4382" /note="putative active site [active]" /db_xref="CDD:293842" regulatory complement(4624892..4624897) /regulatory_class="ribosome_binding_site" /gene="yjfR" /locus_tag="STM4382" /note="putative RBS for yjfR; RegulonDB:STMS1H004268" gene 4625215..4626645 /gene="sgaT" /locus_tag="STM4383" /db_xref="GeneID:1255909" CDS 4625215..4626645 /gene="sgaT" /locus_tag="STM4383" /note="similar to E. coli orf, hypothetical protein (AAC77150.1); Blastp hit to AAC77150.1 (484 aa), 97% identity in aa 10 - 484" /codon_start=1 /transl_table=11 /product="putative PTS enzyme IIsga subunit" /protein_id="NP_463244.3" /db_xref="GeneID:1255909" /translation="MTQQPRLPEIVMEILYNIFTIFFNQVMTNAPLLLGIVTCLGYIL LRKSVSVIIKGTIKTIIGFMLLQAGSGILTSTFKPVVAKMSEVYGINGAISDTYASMM ATIERMGDAYSWVGYAVLLALALNICYVLLRRITGIRTIMLTGHIMFQQAGLIAVSFY IFGYSMWTTIICTAILVSLYWGITSNMMYKPTQEVTDGCGFSIGHQQQFASWIAYKVA PFLGKKEESVEDLKLPGWLNIFHDNIVSTAIVMTIFFGAILLSFGIDTVQAMAGKTHW TIYILQTGFSFAVAIFIITQGVRMFVAELSEAFNGISQRLIPGAVLAIDCAAIYSFAP NAVVWGFMWGTIGQLIAVGILVACGSSILIIPGFIPMFFSNATIGVFANHFGGWRAAL KICLVMGMIEIFGCVWAVKLTGMSAWMGMADWSILAPPMMQGFFSLGIAFMAVIIVIA LAYMFFAGRALRAEEDAEKQLAEQSA" misc_feature 4625248..>4626633 /gene="sgaT" /locus_tag="STM4383" /note="PTS ascorbate-specific subunit IIBC; Region: PRK09548" /db_xref="CDD:236559" gene 4626647..4626966 /gene="sgaB" /locus_tag="STM4384" /db_xref="GeneID:1255910" regulatory 4626647..4626652 /regulatory_class="ribosome_binding_site" /gene="sgaB" /locus_tag="STM4384" /note="putative RBS for sgaB; RegulonDB:STMS1H004269" CDS 4626661..4626966 /gene="sgaB" /locus_tag="STM4384" /note="similar to E. coli orf, hypothetical protein (AAC77151.1); Blastp hit to AAC77151.1 (101 aa), 99% identity in aa 1 - 101" /codon_start=1 /transl_table=11 /product="putative PTS enzyme IIsga subunit" /protein_id="NP_463245.1" /db_xref="GeneID:1255910" /translation="MTVRILAVCGNGQGSSMIMKMKVDQFLTQSNIDHTVNSCAVGEY KSELSGADIIIASTHIAGEISVTGNKYVVGVRNMLSPADFGPKLLEVIKEHFPQDVK" misc_feature order(4626685..4626696,4626700..4626708) /gene="sgaB" /locus_tag="STM4384" /note="P-loop; other site" /db_xref="CDD:99905" misc_feature order(4626685..4626687,4626691..4626696,4626703..4626708) /gene="sgaB" /locus_tag="STM4384" /note="active site" /db_xref="CDD:99905" misc_feature 4626685..4626687 /gene="sgaB" /locus_tag="STM4384" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:99905" misc_feature 4626709..4626963 /gene="sgaB" /locus_tag="STM4384" /note="PTS ascorbate transporter subunit IIB; Region: PRK10222" /db_xref="CDD:182316" gene 4626965..4627440 /gene="ptxA" /locus_tag="STM4385" /db_xref="GeneID:1255911" regulatory 4626965..4626970 /regulatory_class="ribosome_binding_site" /gene="ptxA" /locus_tag="STM4385" /note="putative RBS for ptxA; RegulonDB:STMS1H004270" CDS 4626976..4627440 /gene="ptxA" /locus_tag="STM4385" /note="similar to E. coli putative PTS system enzyme II A component (AAC77152.1); Blastp hit to AAC77152.1 (154 aa), 96% identity in aa 1 - 154" /codon_start=1 /transl_table=11 /product="putative PTS enzyme IIsga subunit" /protein_id="NP_463246.1" /db_xref="GeneID:1255911" /translation="MKLRDSLAENNSIRLQAEANTWQEAVKIGVDLLVAADVVEPRYY QAILDGVEQFGPYFVIAPGLAMPHGRPEEGVKKTGFSLVTLKKPLEFNHEDNDPVDIL ITMAAVDANTHQEVGIMQIVNLFEDEANFDRLRACRTAQEVLDLIDRTNAAA" misc_feature 4626976..4627437 /gene="ptxA" /locus_tag="STM4385" /note="PTS ascorbate transporter subunit IIA; Region: PRK10372" /db_xref="CDD:182417" misc_feature order(4627126..4627128,4627177..4627179) /gene="ptxA" /locus_tag="STM4385" /note="active site" /db_xref="CDD:238129" misc_feature 4627177..4627179 /gene="ptxA" /locus_tag="STM4385" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:238129" gene 4627442..4628104 /gene="sgaH" /locus_tag="STM4386" /db_xref="GeneID:1255912" regulatory 4627442..4627447 /regulatory_class="ribosome_binding_site" /gene="sgaH" /locus_tag="STM4386" /note="putative RBS for sgaH; RegulonDB:STMS1H004271" CDS 4627454..4628104 /gene="sgaH" /locus_tag="STM4386" /EC_number="4.1.2.-" /note="similar to E. coli probable hexulose-6-phosphate synthase (AAC77153.1); Blastp hit to AAC77153.1 (216 aa), 98% identity in aa 1 - 216; putative hexulose phosphate synthase" /codon_start=1 /transl_table=11 /product="arabino hexulose phosphate formaldehyde lyase" /protein_id="NP_463247.1" /db_xref="GeneID:1255912" /translation="MSLPMLQVALDNQTMDSAYETTRLIAEEVDIIEVGTILCVGEGV RAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVTVICCADINTAKGALDVA KEFNGDVQIELTGYWTWEQAQQWRDAGIQQVVYHRSRDAQAAGVAWGEADITAIKRLS DMGFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAESPVEAARQFKRSIAQLWG" misc_feature 4627454..4628101 /gene="sgaH" /locus_tag="STM4386" /note="3-dehydro-L-gulonate-6-phosphate decarboxylase; Region: ulaD; PRK13306" /db_xref="CDD:237344" misc_feature order(4627478..4627480,4627484..4627486,4627550..4627552, 4627637..4627639,4627643..4627645,4627859..4627861, 4627958..4627960,4627964..4627966,4628024..4628029) /gene="sgaH" /locus_tag="STM4386" /note="active site" /db_xref="CDD:240077" misc_feature order(4627490..4627492,4627571..4627573,4627580..4627585, 4627652..4627660,4627676..4627678,4627718..4627720, 4627733..4627735,4627796..4627798,4627814..4627816, 4627859..4627861,4627865..4627873) /gene="sgaH" /locus_tag="STM4386" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:240077" misc_feature order(4627550..4627552,4627637..4627639) /gene="sgaH" /locus_tag="STM4386" /note="magnesium binding site [ion binding]; other site" /db_xref="CDD:240077" gene 4628103..4628968 /gene="sgaU" /locus_tag="STM4387" /db_xref="GeneID:1255913" regulatory 4628103..4628108 /regulatory_class="ribosome_binding_site" /gene="sgaU" /locus_tag="STM4387" /note="putative RBS for sgaU; RegulonDB:STMS1H004272" CDS 4628114..4628968 /gene="sgaU" /locus_tag="STM4387" /EC_number="5.-.-.-" /note="similar to E. coli putative hexulose-6-phosphate isomerase (AAC77154.1); Blastp hit to AAC77154.1 (284 aa), 94% identity in aa 1 - 284" /codon_start=1 /transl_table=11 /product="putative hexulose-6-phosphate isomerase" /protein_id="NP_463248.1" /db_xref="GeneID:1255913" /translation="MLSKQIPLGIYEKALPAGECWLERLRLAKTLGFDFVEMSVDETD ARLARLDWSREQRLALVSAVAETGVRVPSMCLSAHRRFPLGSEDDAIRAQGLEIMRKA IQFAQDVGIRVIQLAGYDVYYQQANDETRCRFRDGLKESVDMASRAQVTLAMEIMDYP LMNSISKALGYAHYLNNPWFQLYPDIGNLSAWDNDVQMELQAGIGHIVAVHVKDTKPG VFKNVPFGEGVVDFERCFETLKQSGYCGPYLIEMWSETAENPAAEVAKARDWVKARMA SAGLVEAA" misc_feature 4628114..4628956 /gene="sgaU" /locus_tag="STM4387" /note="L-ribulose-5-phosphate 3-epimerase; Region: PRK13209" /db_xref="CDD:237307" gene 4628954..4629654 /gene="sgaE" /locus_tag="STM4388" /db_xref="GeneID:1255914" regulatory 4628954..4628959 /regulatory_class="ribosome_binding_site" /gene="sgaE" /locus_tag="STM4388" /note="putative RBS for sgaE; RegulonDB:STMS1H004273" CDS 4628968..4629654 /gene="sgaE" /locus_tag="STM4388" /EC_number="5.1.-.-" /note="similar to E. coli putative epimerase/aldolase (AAC77155.1); Blastp hit to AAC77155.1 (228 aa), 92% identity in aa 1 - 228" /codon_start=1 /transl_table=11 /product="putative L-ribulose 5-phosphate 4-epimerase" /protein_id="NP_463249.1" /db_xref="GeneID:1255914" /translation="MQKLKQQVFDANMDLPRYGLVTFTWGNVSAIDRERGLVVIKPSG VAYETMKVDDMVVVDMDGKVVEGRYRPSSDTATHLALYQRYPSLGGVVHTHSTHATAW AQAGMAIPALGTTHADYFFGDIPCTRALSEEEVQGEYELNTGKVIIETLGEVEPLHTP GIVVYQHGPFAWGKDAHDAVHNAVVMEEVARMAWIARGINPALNPIDDYLMNKHFMRK HGPNAYYGQK" misc_feature 4628968..4629651 /gene="sgaE" /locus_tag="STM4388" /note="L-ribulose-5-phosphate 4-epimerase; Reviewed; Region: sgaE; PRK12348" /db_xref="CDD:183460" misc_feature order(4628995..4628997,4629007..4629009,4629031..4629033, 4629103..4629105,4629109..4629114,4629250..4629252, 4629256..4629261,4629274..4629282,4629301..4629303, 4629307..4629312,4629352..4629354,4629463..4629465, 4629496..4629498,4629517..4629519,4629529..4629531, 4629550..4629552,4629610..4629612) /gene="sgaE" /locus_tag="STM4388" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:238232" misc_feature order(4629046..4629048,4629094..4629099,4629181..4629189, 4629244..4629246,4629250..4629252,4629466..4629468) /gene="sgaE" /locus_tag="STM4388" /note="active site" /db_xref="CDD:238232" misc_feature order(4629244..4629246,4629250..4629252,4629466..4629468) /gene="sgaE" /locus_tag="STM4388" /note="Zn2+ binding site [ion binding]; other site" /db_xref="CDD:238232" gene complement(4629783..4630071) /gene="yjfY" /locus_tag="STM4389" /db_xref="GeneID:1255915" CDS complement(4629783..4630058) /gene="yjfY" /locus_tag="STM4389" /note="similar to E. coli orf, hypothetical protein (AAC77156.1); Blastp hit to AAC77156.1 (91 aa), 71% identity in aa 1 - 91" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_463250.1" /db_xref="GeneID:1255915" /translation="MRARIMLFLAALLPGITATAAVELNNHQARNMDDVRSLGVIYIN HNFATESEANLALNEEADVRNAMYYHVILIREPGSNGNIHASANIYR" misc_feature complement(4629789..4629956) /gene="yjfY" /locus_tag="STM4389" /note="YdgH/BhsA/McbA-like domain; Region: YdgH_BhsA-like; pfam07338" /db_xref="CDD:429417" regulatory complement(4630066..4630071) /regulatory_class="ribosome_binding_site" /gene="yjfY" /locus_tag="STM4389" /note="putative RBS for yjfY; RegulonDB:STMS1H004274" gene 4630248..4630458 /locus_tag="STM4390" /db_xref="GeneID:1255916" regulatory 4630248..4630253 /regulatory_class="ribosome_binding_site" /locus_tag="STM4390" /note="putative RBS for STM4390; RegulonDB:STMS1H004275" CDS 4630252..4630458 /locus_tag="STM4390" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463251.1" /db_xref="GeneID:1255916" /translation="MWQKSALTTVSISLPQQAVYSGMRYEVNISAAKCDGTGVTFGTI NNCTITLSLPAGASIITRHFSADL" gene 4630516..4630924 /gene="rpsF" /locus_tag="STM4391" /db_xref="GeneID:1255917" regulatory 4630516..4630521 /regulatory_class="ribosome_binding_site" /gene="rpsF" /locus_tag="STM4391" /note="putative RBS for rpsF; RegulonDB:STMS1H004276" CDS 4630529..4630924 /gene="rpsF" /locus_tag="STM4391" /note="similar to E. coli 30S ribosomal subunit protein S6 (AAC77157.1); Blastp hit to AAC77157.1 (131 aa), 99% identity in aa 1 - 131" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S6" /protein_id="NP_463252.1" /db_xref="GeneID:1255917" /translation="MRHYEIVFMVHPDQSEQVPGMIERYSAAITGAEGKIHRLEDWGR RQLAYPINKLHKAHYVLMNVEAPQEVIDELETTFRFNDAVIRSMVMRTKHAVTEASPM VKAKDERRERRDDFANETADDAEAGDSEE" misc_feature 4630529..4630846 /gene="rpsF" /locus_tag="STM4391" /note="Ribosomal protein S6 [Translation, ribosomal structure and biogenesis]; Region: RpsF; COG0360" /db_xref="CDD:440129" gene 4630914..4631245 /gene="priB" /locus_tag="STM4392" /db_xref="GeneID:1255918" regulatory 4630914..4630919 /regulatory_class="ribosome_binding_site" /gene="priB" /locus_tag="STM4392" /note="putative RBS for priB; RegulonDB:STMS1H004277" CDS 4630931..4631245 /gene="priB" /locus_tag="STM4392" /note="similar to E. coli primosomal replication protein N (AAC77158.1); Blastp hit to AAC77158.1 (104 aa), 99% identity in aa 1 - 104" /codon_start=1 /transl_table=11 /product="primosomal replication protein N" /protein_id="NP_463253.1" /db_xref="GeneID:1255918" /translation="MTNRLALSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHR QAWCQMPVIVSGHENQAITHSITVGSRITVQGFISCHKAKNGLSKMVLHAEQIELIDS GD" misc_feature 4630931..4631233 /gene="priB" /locus_tag="STM4392" /note="Primosomal replication protein N [Replication, recombination and repair]; Region: PriB; COG2965" /db_xref="CDD:442205" gene 4631235..4631477 /gene="rpsR" /locus_tag="STM4393" /db_xref="GeneID:1255919" regulatory 4631235..4631240 /regulatory_class="ribosome_binding_site" /gene="rpsR" /locus_tag="STM4393" /note="putative RBS for rpsR; RegulonDB:STMS1H004278" CDS 4631250..4631477 /gene="rpsR" /locus_tag="STM4393" /note="similar to E. coli 30S ribosomal subunit protein S18 (AAC77159.1); Blastp hit to AAC77159.1 (75 aa), 98% identity in aa 1 - 75" /codon_start=1 /transl_table=11 /product="30S ribosomal subunit protein S18" /protein_id="NP_463254.2" /db_xref="GeneID:1255919" /translation="MARYFRRRKFCRFTAEGVQEIDYKDIATLKNYITESGKIVPSRI TGTRAKYQRQLARAIKRARYLSLLPYTDRHQ" misc_feature 4631256..4631474 /gene="rpsR" /locus_tag="STM4393" /note="Ribosomal protein S18 [Translation, ribosomal structure and biogenesis]; Region: RpsR; COG0238" /db_xref="CDD:440008" gene 4631507..4631968 /gene="rplI" /locus_tag="STM4394" /db_xref="GeneID:1255920" regulatory 4631507..4631512 /regulatory_class="ribosome_binding_site" /gene="rplI" /locus_tag="STM4394" /note="putative RBS for rplI; RegulonDB:STMS1H004279" CDS 4631519..4631968 /gene="rplI" /locus_tag="STM4394" /note="similar to E. coli 50S ribosomal subunit protein L9 (AAC77160.1); Blastp hit to AAC77160.1 (149 aa), 95% identity in aa 1 - 149" /codon_start=1 /transl_table=11 /product="50S ribosomal subunit protein L9" /protein_id="NP_463255.1" /db_xref="GeneID:1255920" /translation="MQVILLDKVANLGSLGDQVNVKAGYARNFLVPKGKAVPATKKNV EYFEARRAELEAKLADVLAAANARAEKINALETVTIASKAGDEGKLFGSIGTRDIADA VTAAGVDVAKSEVRLPNGVLRTTGEHEVNFQVHSEVFAKVIINVVAE" misc_feature 4631519..4631965 /gene="rplI" /locus_tag="STM4394" /note="Ribosomal protein L9 [Translation, ribosomal structure and biogenesis]; Region: RplI; COG0359" /db_xref="CDD:440128" gene 4632105..4633042 /gene="yifZ" /locus_tag="STM4395" /db_xref="GeneID:1255921" regulatory 4632105..4632110 /regulatory_class="ribosome_binding_site" /gene="yifZ" /locus_tag="STM4395" /note="putative RBS for yifZ; RegulonDB:STMS1H004280" CDS 4632116..4633042 /gene="yifZ" /locus_tag="STM4395" /note="similar to E. coli orf, hypothetical protein (AAC74606.1); Blastp hit to AAC74606.1 (266 aa), 25% identity in aa 20 - 250" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_463256.1" /db_xref="GeneID:1255921" /translation="MDTQRQASPFARKNVVYVCAAFCCLLWGSAYPAIKSGYDLFQIA TDDIPSKIVFAGYRFLFAGGLLLLFALLQRKPIGRFRPRQFAQLTLLGLTQTSLQYLF FYIGLAFTSGVKGSIMNATGTFFSVLLAHFIYQNDRLSYNKTLGCILGFAGVMVVNVS NGLDFSFNLPGEGSVVLAAFILSAATLYGKRLSQTVDPMVMTGYQLGIGGLVLVIGGY VFGGTLTIHGFSSVAILVYLTLLSSVAFALWSILLKYNRVGMIAPFNFLIPVSGAALS AIFLGENILEWKYMIALVLVCSGIWWVNKVKR" misc_feature 4632164..4633039 /gene="yifZ" /locus_tag="STM4395" /note="Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]; Region: RhaT; COG0697" /db_xref="CDD:440461" gene complement(4633092..4633740) /gene="ytfB" /locus_tag="STM4396" /db_xref="GeneID:1255922" CDS complement(4633092..4633727) /gene="ytfB" /locus_tag="STM4396" /note="similar to E. coli orf, hypothetical protein (AAC77163.1); Blastp hit to AAC77163.1 (224 aa), 85% identity in aa 13 - 224" /codon_start=1 /transl_table=11 /product="putative cell envelope opacity-associated protein A" /protein_id="NP_463257.1" /db_xref="GeneID:1255922" /translation="MPGRFELKPTLAKIWHAPDNFRIMEPLPPMHRRGIIIAAIVLVI GFLLPASETSDSPVVTREAQLDLQSQSQPPTEAQLQAQLVAPQNDPDQVAPVAPEPIQ EGQPEEQNQPQTQPFQQDSGIGQQWRSYRVESGKTLAQLFRDHGLPPTDVYAMAQVEG AGKPLSNLKNGQMIKIRQNASGVVTGLTIDGDNGQQVLFTRQPDGSFIRAQ" misc_feature complement(<4633095..4633658) /gene="ytfB" /locus_tag="STM4396" /note="Cell division protein YtfB/OapA (opacity-associated protein A) [Cell cycle control, cell division, chromosome partitioning]; Region: OapA; COG3061" /db_xref="CDD:442295" misc_feature complement(4633095..4633352) /gene="ytfB" /locus_tag="STM4396" /note="Opacity-associated protein A LysM-like domain; Region: OapA; pfam04225" /db_xref="CDD:427799" regulatory complement(4633735..4633740) /regulatory_class="ribosome_binding_site" /gene="ytfB" /locus_tag="STM4396" /note="putative RBS for ytfB; RegulonDB:STMS1H004281" gene 4633886..4634567 /gene="fklB" /locus_tag="STM4397" /db_xref="GeneID:1255923" regulatory 4633886..4633891 /regulatory_class="ribosome_binding_site" /gene="fklB" /locus_tag="STM4397" /note="putative RBS for fklB; RegulonDB:STMS1H004282" CDS 4633905..4634567 /gene="fklB" /locus_tag="STM4397" /EC_number="5.2.1.8" /note="similar to E. coli FKBP-type 22KD peptidyl-prolyl cis-trans isomerase (rotamase) (AAC77164.1); Blastp hit to AAC77164.1 (259 aa), 92% identity in aa 41 - 259" /codon_start=1 /transl_table=11 /product="FKBP-type 22KD peptidyl-prolyl cis-trans isomerase" /protein_id="NP_463258.3" /db_xref="GeneID:1255923" /translation="MLPATFLISDEGKIMATPTFDTIEAQASYGIGLQVGQQLSESGL EGLLPEALVAGIADALEGKHPAVPVDVVHRALREIHERADAVRRERFKAMAAEGVKYL EENREKDGVNSTESGLQFRVLTQGEGAIPARTDRVRVHYTGKLIDGTVFDSSVARGEP AEFPVNGVIAGWIEALTLMPVGSKWELTIPQELAYGERGAGASIPPFSTLVFEVELLE IL" misc_feature 4633947..4634564 /gene="fklB" /locus_tag="STM4397" /note="peptidyl-prolyl cis-trans isomerase; Provisional; Region: PRK11570" /db_xref="CDD:183207" gene 4634850..4636272 /gene="cycA" /locus_tag="STM4398" /db_xref="GeneID:1255924" regulatory 4634850..4634855 /regulatory_class="ribosome_binding_site" /gene="cycA" /locus_tag="STM4398" /note="putative RBS for cycA; RegulonDB:STMS1H004283" CDS 4634863..4636272 /gene="cycA" /locus_tag="STM4398" /note="similar to E. coli transport of D-alanine, D-serine, and glycine (AAC77165.1); Blastp hit to AAC77165.1 (470 aa), 95% identity in aa 1 - 469" /codon_start=1 /transl_table=11 /product="APC family D-alanine/D-serine/glycine transport protein" /protein_id="NP_463259.1" /db_xref="GeneID:1255924" /translation="MVDQVKVAADEQAPAEQSLRRNLTNRHIQLIAIGGAIGTGLFMG SGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLEYKSFSDFASDLLGPWAGYF TGWTYWFCWVVTGMADVVAITAYAQFWFPGLSDWVASLAVVILLLSLNLATVKMFGEM EFWFAMVKIVAIVALIVVGLVMIAMHFKSPTGVEASFAHLWNDGGWFPKGISGFFAGF QIAVFAFVGIELVGTTAAETKDPEKSLPRAINSIPIRIIMFYVFALIVIMSVTPWSSV VPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGLAQEGVAPKA FAKLSKRAVPAKGLTFSCICLLGGVVMLMVNPSVIGAFTMITTVSAILFMFVWTIILC SYLVYRKKRPHLHEKSIYKMPLGKLMCWVCMAFFAFVLVLLTLEDDTRQALIVTPLWF IALGLGWLLIGKKRMAGMR" misc_feature 4634866..4636269 /gene="cycA" /locus_tag="STM4398" /note="D-alanine/D-serine/glycine permease; Provisional; Region: PRK11049" /db_xref="CDD:236830" gene complement(4636384..4637058) /gene="ytfE" /locus_tag="STM4399" /db_xref="GeneID:1255925" CDS complement(4636384..4637046) /gene="ytfE" /locus_tag="STM4399" /note="similar to E. coli orf, hypothetical protein (AAC77166.1); Blastp hit to AAC77166.1 (220 aa), 89% identity in aa 1 - 220" /codon_start=1 /transl_table=11 /product="putative cell morphogenesis" /protein_id="NP_463260.1" /db_xref="GeneID:1255925" /translation="MAYRDQPLGELALSIPRASALFRQYDMDYCCGGKQTLARAAARH DVDIDIIEAQLAQLAEQPIEKDWRAVPLADIIDHIVVRYHDRHREQLPELILQATKVE RVHADKPNVPRGLTKYLTALHEELSSHMMKEEQILFPMIKQGMGRQATGPISVMESEH DEAGELVDVIKHVTKNVTPPPEACTTWKAMYNGINEMIDDLMEHISLENNVLFPRALA GE" misc_feature complement(4636387..4637046) /gene="ytfE" /locus_tag="STM4399" /note="iron-sulfur cluster repair protein YtfE; Region: PRK10992" /db_xref="CDD:236812" regulatory complement(4637053..4637058) /regulatory_class="ribosome_binding_site" /gene="ytfE" /locus_tag="STM4399" /note="putative RBS for ytfE; RegulonDB:STMS1H004284" gene complement(4637149..4638126) /gene="ytfF" /locus_tag="STM4400" /db_xref="GeneID:1255926" CDS complement(4637149..4638114) /gene="ytfF" /locus_tag="STM4400" /note="similar to E. coli putative transmembrane subunit (AAC77167.1); Blastp hit to AAC77167.1 (324 aa), 81% identity in aa 4 - 323" /codon_start=1 /transl_table=11 /product="putative cationic amino acid transporter" /protein_id="NP_463261.1" /db_xref="GeneID:1255926" /translation="MISGVLYALLAGLMWGLIFVGPLIVPDYPALLQSMGRYLALGLI ALPIAWLGRTRLRQLTRKDWSTALSLTLMGNVIYYACLASAIQRTGAPVSTMIIGTLP VVIPLFANVLYSQRDGRLSWRRLAPALALIGFGLLCVNIAELSQGLSDVSGWRYGSGI VLALISVACWAWYALRNARWLRENPDKHPMMWATAQALVTLPVSLIGYAAVCLWLSIQ KPLFTLPFGPHPALFIGLMIAIAVLCSWVGALCWNIASQKLPTVILGPLIVFETLAGL LYTFILRQEIPPFLTLSGIALLVAGVVIAVRAKPEKATVVPVTER" misc_feature complement(4637173..4638114) /gene="ytfF" /locus_tag="STM4400" /note="Permease of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism, Amino acid transport and metabolism, General function prediction only]; Region: RhaT; COG0697" /db_xref="CDD:440461" regulatory complement(4638121..4638126) /regulatory_class="ribosome_binding_site" /gene="ytfF" /locus_tag="STM4400" /note="putative RBS for ytfF; RegulonDB:STMS1H004285" gene complement(4638195..4639055) /gene="ytfG" /locus_tag="STM4401" /db_xref="GeneID:1255927" CDS complement(4638195..4639043) /gene="ytfG" /locus_tag="STM4401" /note="similar to E. coli putative oxidoreductase (AAC77168.1); Blastp hit to AAC77168.1 (286 aa), 80% identity in aa 1 - 278" /codon_start=1 /transl_table=11 /product="putative reductase" /protein_id="NP_463262.1" /db_xref="GeneID:1255927" /translation="MIAITGATGQLGQHVIENLLKTTPASHLVAIVRNPKKAAPLSQR GIAVRQADYANEAALTTALQGVDKLLLISSSEVGQRTAQHRNVIQAAIAAKVKFIAYT SLLHADKSPLALADEHIETEKMLAESGIPHTLLRNGWYTENYLASVPAALKHGVFIGA AGEGKIASAMRADYAAAAARVIREEGHAGNVYELAGDDAWTLSQLADELTHQSGKKIV YQNLSEVDFAAALKGAGLPDGLADMLANSDAGAAKGGLFDDSHTLRKLIGRPTTTLTE SLRSVL" misc_feature complement(4638222..4639040) /gene="ytfG" /locus_tag="STM4401" /note="triphenylmethane reductase (TMR)-like proteins, NMRa-like, atypical (a) SDRs; Region: TMR_SDR_a; cd05269" /db_xref="CDD:187578" misc_feature complement(order(4638531..4638533,4638624..4638632, 4638819..4638830,4638882..4638893,4638933..4638935, 4638942..4638947,4639011..4639022,4639026..4639028)) /gene="ytfG" /locus_tag="STM4401" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187578" regulatory complement(4639050..4639055) /regulatory_class="ribosome_binding_site" /gene="ytfG" /locus_tag="STM4401" /note="putative RBS for ytfG; RegulonDB:STMS1H004286" gene 4639118..4639517 /gene="ytfH" /locus_tag="STM4402" /db_xref="GeneID:1255928" regulatory 4639118..4639123 /regulatory_class="ribosome_binding_site" /gene="ytfH" /locus_tag="STM4402" /note="putative RBS for ytfH; RegulonDB:STMS1H004287" CDS 4639131..4639517 /gene="ytfH" /locus_tag="STM4402" /note="similar to E. coli orf, hypothetical protein (AAC77169.1); Blastp hit to AAC77169.1 (156 aa), 90% identity in aa 35 - 152" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_463263.1" /db_xref="GeneID:1255928" /translation="MRAHTLSRQLREGNLFAEQCPSREVLKHVTSRWGVLILVALRDG THRFSDLRRKMGGVSEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSDK VAALADWIELNLPQVLAQRERLSDGG" misc_feature 4639170..4639481 /gene="ytfH" /locus_tag="STM4402" /note="DNA-binding transcriptional regulator, HxlR family [Transcription]; Region: HxlR; COG1733" /db_xref="CDD:441339" gene complement(4639575..4641589) /gene="cpdB" /locus_tag="STM4403" /db_xref="GeneID:1255929" CDS complement(4639575..4641518) /gene="cpdB" /locus_tag="STM4403" /EC_number="3.1.4.16" /note="2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor. (SW:CN16_SALTY)" /codon_start=1 /transl_table=11 /product="2',3'-cyclic-nucleotide 2'-phosphodiesterase" /protein_id="NP_463264.1" /db_xref="GeneID:1255929" /translation="MIKFSATLLATLIAASVNAATVDLRIMETTDLHSNMMDFDYYKD TATEKFGLVRTASLIHAARNEVKNSVLVDNGDLIQGSPLGDYMAAKGLKDGDVHPVYK ALNTLDYAVGNLGNHEFNYGLDYLHNALAGAKFPYVNANIIDVKTQKPLFTPYLIKET SVIDKDGNPQTLKIGYIGFVPPQIMIWDKANLSGKVTVNDITETARKYVPEMREKGAD IVVVIAHSGLSADPYHSMAENSVYYLSEVPGVDAIMFGHAHAVFPGKDFADIKGADIA KGTLNGIPAVMPGMWGDHLGVVDLVLNNDSGKWQVTQAKAEARPIYDAAAKKSLAAED SKLVGILKADHDATREFVSKPIGKSADNMYSYLALVQDDPTVQVVNNAQKAYVEHFIQ GDPDLAKLPVLSAAAPFKVGGRKNDPASFVEVEKGQLTFRNAADLYLYPNTLVVVKAS GKEVKEWLECSAGQFNQIDIHSNKPQSLINWDGFRTYNFDVIDGVNYQIDVSQPARYD GECQMVNPQAERIKNLTFNGKPVDPNATFLVATNNYRAYGGKFAGTGDSHIAFASPDE NRAVLAAWIGAESKRAGEIHPAADNNWRLAPIHSDTALDIRFETSPGDKAAAFIKAKG QYPMKKVAVDDIGFAIYQVDLSK" misc_feature complement(4639578..4641518) /gene="cpdB" /locus_tag="STM4403" /note="bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase; Region: cpdB; PRK09420" /db_xref="CDD:236506" regulatory complement(4641525..4641530) /regulatory_class="ribosome_binding_site" /gene="cpdB" /locus_tag="STM4403" /note="putative RBS for cpdB; RegulonDB:STMS1H004288" regulatory complement(4641562..4641570) /regulatory_class="minus_10_signal" /gene="cpdB" /locus_tag="STM4403" /note="putative -10_signal for cpdB; RegulonDB:STMLTH004673" regulatory complement(4641581..4641589) /regulatory_class="minus_35_signal" /gene="cpdB" /locus_tag="STM4403" /note="putative -35_signal for cpdB; RegulonDB:STMLTH004673" protein_bind complement(4641641..4641661) /note="putative binding site for CRP, RegulonDB: STMS1H000061" /bound_moiety="CRP" gene 4641776..4642526 /gene="cysQ" /locus_tag="STM4404" /db_xref="GeneID:1255930" regulatory 4641776..4641781 /regulatory_class="ribosome_binding_site" /gene="cysQ" /locus_tag="STM4404" /note="putative RBS for cysQ; RegulonDB:STMS1H004289" CDS 4641786..4642526 /gene="cysQ" /locus_tag="STM4404" /note="affects pool of 3'-phosphoadenosine-5'-phosphosulfate in pathway of sulfite synthesis; CYSQ protein. (SW:CYSQ_SALTY)" /codon_start=1 /transl_table=11 /product="CysQ protein" /protein_id="NP_463265.1" /db_xref="GeneID:1255930" /translation="MLEQVCQLARNAGDAIMQVYDGAKPMEYARKQDDSPVTAADIAA HTVILEGLRTLTPDIPVLSEEDPPAWEVRQHWQRYWLVDPLDGTKEFIKRNGEFTVNI ALIEQGKPVLGVVYAPVLKVMYYAAEGKAWKEECGVRKQIQVRDARPPLVVISRSHTD DELTEYLQQLGEHQTTSIGSSLKFCLVAEGQAQLYPRFGPTSVWDTAAGHAIAVAAGA HVHDWQGKTLDYTPRESFLNPGFRVTIY" misc_feature 4641786..4642523 /gene="cysQ" /locus_tag="STM4404" /note="adenosine-3'(2'),5'-bisphosphate nucleotidase; Provisional; Region: PRK10931" /db_xref="CDD:182848" misc_feature order(4641906..4641908,4641975..4641980,4642032..4642049, 4642053..4642055,4642248..4642250,4642257..4642259, 4642332..4642334,4642368..4642370,4642395..4642400) /gene="cysQ" /locus_tag="STM4404" /note="active site" /db_xref="CDD:238816" gene complement(4642516..4643084) /gene="ytfJ" /locus_tag="STM4405" /db_xref="GeneID:1255931" CDS complement(4642516..4643073) /gene="ytfJ" /locus_tag="STM4405" /note="similar to E. coli orf, hypothetical protein (AAC77173.1); Blastp hit to AAC77173.1 (184 aa), 85% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_463266.1" /db_xref="GeneID:1255931" /translation="MTLRKILAMSCLLLPIMACAHNLEVNQRVPPVGIADRGELTLNK DEFSYKNWNSAQLAGKVRVLLHIAGRTSAKEKNATLIEAIKSAKLPHDRYQTTTIVNT DDAIPGSGMFVRSSIESNKKLYPWSQFIVDSNGVARNAWQLKEEGSAVIVLDKDGRVQ WVKDGALTQQEVQQVVDLLHKLLSK" misc_feature complement(4642519..4643073) /gene="ytfJ" /locus_tag="STM4405" /note="Predicted transcriptional regulator YtfJ [General function prediction only]; Region: YtfJ; COG3054" /db_xref="CDD:442288" regulatory complement(4643079..4643084) /regulatory_class="ribosome_binding_site" /gene="ytfJ" /locus_tag="STM4405" /note="putative RBS for ytfJ; RegulonDB:STMS1H004290" gene 4643321..4643606 /gene="ytfK" /locus_tag="STM4406" /db_xref="GeneID:1255932" regulatory 4643321..4643326 /regulatory_class="ribosome_binding_site" /gene="ytfK" /locus_tag="STM4406" /note="putative RBS for ytfK; RegulonDB:STMS1H004291" CDS 4643334..4643606 /gene="ytfK" /locus_tag="STM4406" /note="similar to E. coli orf, hypothetical protein (AAC77174.1); Blastp hit to AAC77174.1 (81 aa), 90% identity in aa 1 - 81" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463267.3" /db_xref="GeneID:1255932" /translation="MRLKTVGPIVASQGRNTLQETTMKIFQRYNPLQVAKYVKILFRG RLYIKDVGAFEFDKGKILIPKVRDKQHLSVMSEVNRQVMRLQTEMA" misc_feature 4643400..4643588 /gene="ytfK" /locus_tag="STM4406" /note="Protein of unknown function (DUF1107); Region: DUF1107; pfam06526" /db_xref="CDD:428988" gene complement(4643691..4645045) /gene="ytfL" /locus_tag="STM4407" /db_xref="GeneID:1255933" CDS complement(4643691..4645034) /gene="ytfL" /locus_tag="STM4407" /note="similar to E. coli putative transport protein (AAC77175.1); Blastp hit to AAC77175.1 (447 aa), 91% identity in aa 1 - 447" /codon_start=1 /transl_table=11 /product="putative hemolysin-related protein" /protein_id="NP_463268.1" /db_xref="GeneID:1255933" /translation="MLNSIFIIFCLIAVSAFFSISEISLAASRKIKLKLLADEGSINA QRVLKMQENPGMFFTVVQIGLNAVAILGGIVGDAAFSPAFSALFSHYMSPELSEQLSF ILSFSLVTGLFILFADLTPKRIGMIAPEAVALRIINPMRFCLFVFRPLVWLFNGMANN IFRLFKIPMVRKDDITSDDIYAVVEAGALAGVLRKQEHELIENVFELESRTVPSSMTS RESIIWFDLHEDEQSLKKKVAEHPHSKFLVCNEDIDHIIGYVDSKDLLNRVLANQSMA LNSGVQIRNTLIVPDTLTLSEALESFKTAGEDFAVIMNEYALVVGIITLNDVMTTLMG DLVGQGLEEQIVARDENSWLVDGGTPIDDVMRVLDIDEFPQSGNYETIGGFMMFMLRK IPKRTDSVKFSGYKFEVVDIDNYRIDQLLVTRLDNKSNVPAPKLPDAQGKEDSAA" misc_feature complement(4643739..4645034) /gene="ytfL" /locus_tag="STM4407" /note="Hemolysin-related protein, contains CBS domains, UPF0053 family [General function prediction only]; Region: TlyC; COG1253" /db_xref="CDD:440865" regulatory complement(4645040..4645045) /regulatory_class="ribosome_binding_site" /gene="ytfL" /locus_tag="STM4407" /note="putative RBS for ytfL; RegulonDB:STMS1H004292" gene complement(4645217..4645866) /gene="msrA" /locus_tag="STM4408" /db_xref="GeneID:1255934" CDS complement(4645217..4645855) /gene="msrA" /locus_tag="STM4408" /note="similar to E. coli peptide methionine sulfoxide reductase (AAC77176.1); Blastp hit to AAC77176.1 (212 aa), 89% identity in aa 1 - 212" /codon_start=1 /transl_table=11 /product="peptide methionine sulfoxide reductase" /protein_id="NP_463269.1" /db_xref="GeneID:1255934" /translation="MSLFDKKHLVTQADALPGRNTPMPIATLHAVNEHSMTNVPAGME IAYFAMGCFWGVERLFWQLPGVYSTAAGYAGGYTPNPTYREVCSGQTGHAEAVRIVYD PAVISYEQLLQTFWENHDPTQGMQQGNDHGTQYRSAIYPLTPEQNAAAHASRERFQSA MTAAGDHRPITTEIAHATPFYYAEDEHQQYLHKNPYGYCGIGGIGVCLPPDA" misc_feature complement(4645271..4645738) /gene="msrA" /locus_tag="STM4408" /note="Peptide methionine sulfoxide reductase MsrA [Posttranslational modification, protein turnover, chaperones]; Region: MsrA; COG0225" /db_xref="CDD:439995" regulatory complement(4645861..4645866) /regulatory_class="ribosome_binding_site" /gene="msrA" /locus_tag="STM4408" /note="putative RBS for msrA; RegulonDB:STMS1H004293" gene 4646057..4647801 /gene="ytfM" /locus_tag="STM4409" /db_xref="GeneID:1255935" regulatory 4646057..4646062 /regulatory_class="ribosome_binding_site" /gene="ytfM" /locus_tag="STM4409" /note="putative RBS for ytfM; RegulonDB:STMS1H004294" CDS 4646068..4647801 /gene="ytfM" /locus_tag="STM4409" /note="similar to E. coli orf, hypothetical protein (AAC77177.1); Blastp hit to AAC77177.1 (577 aa), 90% identity in aa 3 - 577" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_463270.1" /db_xref="GeneID:1255935" /translation="MPHIRQLCWVSLLCLSSSAVAANVRLKVEGLSGELEKNVRAQLS TIQSDEVTPDRRFRARVDDAIREGLKALGYYEPTIKFDLLPPPAKGRQVLIARVTPGQ PVLIGGTEVILRGGARTDKDYLALLKTRPAIGTVLNQGDYDNFKKSLTSVSLRKGYFD SEFIKSQLGIALGRHQAFWDIDYDSGERYRFGPVTFEGSQIRDEYLQNLLPFKEGDEY ESKDLAELNRRLSATGWFNSVVVAPEFEKSRKTKILPLKGVVSPRTENTIETGVGYST DVGPRVKASWKKPWMNSYGHSLTTSTSISAPEQVLDFSYKMPLLKNPLEQYYLVQGGF KRTDLNDTEQDSTTLAVSRYWDLSSGWQRAINLRWSFDHFTQGNVTNTTMLFYPGVMI SRTRSRGGLMPTWGDSQRYSVDYSNTAWGSDVDFSVLQAQNVWIRTLYDRHRFVMRAN LGWIETGDFDKVPPDLRFFAGGDRSIRGYKYKSISPKDSDGNLKGASKLATGSLEYQY NVTGKWWGAVFVDSGEAVSDIRRSDFKTGTGVGVRWASPVGPVKLDFAVPVGDKDEHG LQFYIGLGPEL" misc_feature 4646086..4647798 /gene="ytfM" /locus_tag="STM4409" /note="Outer membrane translocation and assembly module TamA [Cell wall/membrane/envelope biogenesis]; Region: TamA; COG0729" /db_xref="CDD:440493" gene 4647784..4651577 /gene="ytfN" /locus_tag="STM4410" /db_xref="GeneID:1255936" regulatory 4647784..4647789 /regulatory_class="ribosome_binding_site" /gene="ytfM" /locus_tag="STM4409" /note="putative RBS for ytfN; RegulonDB:STMS1H004295" CDS 4647798..4651577 /gene="ytfN" /locus_tag="STM4410" /note="similar to E. coli orf, hypothetical protein (AAC77178.1); Blastp hit to AAC77178.1 (1259 aa), 86% identity in aa 1 - 1259" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_463271.1" /db_xref="GeneID:1255936" /translation="MSLWKKISLGVLIFIVVLLASVAFLVGTTTGLHLVFSAANRWVP GLEIGQVTGGWRDLSLKNIRYEQPGVAVNAGEIHLAIGLDCLWRSSLCVNDLALKDIN VAIDSKKMPPSEPAQEEEESGPLNLSTPWPITLSRVALNNINIKIDDTTVSVLDFTSG LAWQEKNLTLKPTRLQGLLIALPKVADVAQEEVVEPKIEKPQPDEKPLGETLKDLFAK PVMPEMTDVHLPLNLNIESFRGEQLRITGDTDLTVRTMLLKVSSIDGNMKLDTLDIDA NQGTVKASGTAQLANNWPVDITLNSTLNIDPLKGEKIKLKVGGALREQLEVGVNLSGP MDVALRAQTRLAEAGLPLNLEVVSQRIAWPLTGDTQFQADDLKLKLSGKMTDYTLSMR TAVKGQDIPPATITLDAKGNERQINLDKLTVAALEGKTELKALVDWQQAISWRGELTL NGINTAKEIPDWPAKLNGVMKTKGSLYGGTWQMDVPELKLTGNVKQNSVNVNGTLKGN SYMQWTIPGLHFALGPNSADIKGELGVKELNLDAAIDAPGLDNALPGLGGMAKGIVKV RGTVEAPQLLADITARGLRWQELSVAQARIEGDIKSTDQIAGHLNVRVERISQPDVNI NLVTLDAKGSEKQHQLQLRVQGEPVSGQLSLTGSFDREAARWKGTLSDTRFQTPVGPW SLTRAIALDYRNKEQKISIGPHCWLNPNAELCIPQTIDAGAAGRAVVNLNRFDLAMLK PFMPDTTQASGIFSGKADVSWDTTQEGLPQGKVTLSGRNVKVTQTVNDAPLPVAFETL NLSADLHNNRAELGWLIRLTNNGQFDGQVQVTDPQGRRNLGGNVNMRNLNLAMVNPVF SRGEKAAGMLNARLRLGGDVQSPQLFGQLQLSALDIDGNFMPFEMQPSQLTMNFSGTR STLAGIVRTQQGQINLNGNADWSQIDNWRARVTAKGSRVRITVPPMVRLDVSPDVVFD ATPSLFTLDGRVDVPWARIVVHDLPESAVGVSSDVVMLNNDLQPETPQTASIPINSNL TVHVGNNVRIDAFGLKARLTGDLKVAQDKQGLGLNGQINIPDGRFRAYGQDLLVRKGE LLFSGPPDQPLLNIEAIRNPDATEDDVIAGVRVTGTADEPKAEIFSDPAMPQAEALSY LLRGQGLDSNQSDSAAMTSMLIGLGVAQSGQVVGKIGETFGVSNLALDTQGVGDSSQV VVSGYVLPGLQVKYGVGIFDSLATLTLRYRLMPKLYLEAVSGVDQALDLLYQFEF" misc_feature 4647966..4649675 /gene="ytfN" /locus_tag="STM4410" /note="Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport]; Region: TamB; COG2911" /db_xref="CDD:442155" misc_feature 4649337..4651574 /gene="ytfN" /locus_tag="STM4410" /note="Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport]; Region: TamB; COG2911" /db_xref="CDD:442155" gene 4651580..4651924 /gene="ytfP" /locus_tag="STM4411" /db_xref="GeneID:1255937" CDS 4651580..4651924 /gene="ytfP" /locus_tag="STM4411" /note="similar to E. coli orf, hypothetical protein (AAC77179.1); Blastp hit to AAC77179.1 (113 aa), 92% identity in aa 1 - 113" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463272.1" /db_xref="GeneID:1255937" /translation="MRIFVYGSLRQKQGNSHWMTNAQLLGDYRIDNYQLYSLGHYPGA VPGNGAVYGEVYRIDNATLAELDALRTRGGEYARQLIQTPYGSAWMYVYQRPVDGLTL IESGDWLDRNQP" misc_feature 4651580..4651909 /gene="ytfP" /locus_tag="STM4411" /note="Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family [Amino acid transport and metabolism]; Region: YtfP; COG2105" /db_xref="CDD:441708" gene complement(4651978..4653192) /locus_tag="STM4412" /db_xref="GeneID:1255938" CDS complement(4651978..4653186) /locus_tag="STM4412" /note="similar to E. coli D-galactonate transport (AAC76714.1); Blastp hit to AAC76714.1 (445 aa), 31% identity in aa 42 - 197, 21% identity in aa 257 - 442" /codon_start=1 /transl_table=11 /product="putative pemease" /protein_id="NP_463273.1" /db_xref="GeneID:1255938" /translation="MTSMQKWLRIGATLMFGLFVAYLDRSNLSVTLPTITHDLNIDGA TASIVLTIFLIGYAFSNIFGGVFTQRYDPKKIVILMVLIWSIATVFVGFTSSVYVILI CRLVLGITEGIYWPQQSRFASDWFSDKERTQANSIIQYYGQFLALGLGFMILSPLDAA FGWRNVFIITGVIGIVVVVPLYITMLKKQEEAPYYRAPAPTEKTKLTLESLGGTPFLL LIFTYITQGMLFWGITLWIPMVVNSLGYTGFSKALVSSLPYLTAVILAIPISWISDKT QKRVLIASLGLLIPGVMLFLLPFVDAPGFKITLITLAMGYYAASFTPNIWSIIQSNVK PHAIGPASGIINGIGAGGGGTLAGLMVGYFYRTTGSYMQGFMVLGCIVILGGASLLIY GRIRAHHARR" misc_feature complement(4652014..4653168) /locus_tag="STM4412" /note="Major Facilitator Superfamily; Region: MFS; cl28910" /db_xref="CDD:475125" misc_feature complement(order(4652125..4652127,4652134..4652139, 4652146..4652151,4652158..4652160,4652209..4652211, 4652227..4652229,4652239..4652244,4652389..4652391, 4652401..4652403,4652482..4652484,4652491..4652499, 4652506..4652511,4652518..4652520,4652746..4652748, 4652755..4652760,4652767..4652769,4652830..4652832, 4652839..4652847,4652851..4652856,4653004..4653006, 4653100..4653102,4653109..4653114,4653121..4653126)) /locus_tag="STM4412" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340877" gene complement(4653183..4654346) /locus_tag="STM4413" /db_xref="GeneID:1255939" CDS complement(4653183..4654346) /locus_tag="STM4413" /codon_start=1 /transl_table=11 /product="putative imidazolonepropionase and related amidohydrolases" /protein_id="NP_463274.1" /db_xref="GeneID:1255939" /translation="MMKNDILITGGHIIDPARNINEINNLRIINDIIVDADKYPVTSE TRIIHADGMIVTPGLIDYHAHVFYDATEGGVRPDMYMPPNGVTTVVDAGSAGTANFDA FYRTVICASKVRIKAFLTVSPPGQTWSQENYDPDNIDENKIHALFRQYRNVLQGLKLK VQTEDIAEYGLKPLTESLRIANDLKCPVAIHSTHPVVPMKELVSLLRRGDIIAHAFHG KGSTILTDEGVVLAEVRQARERGVIFDAANGRSHFSMNTARRAIANGFLPDIISSDLS TITKLAWPVYALPWILSKYLALGVALTDVINACTHTPAVLMGMAAEIGTLAPGAFADI AIFKLKNRHVEFADIHGETLTGTHVLVPQMTIKSGEILFRQIDFGARPNGVEK" misc_feature complement(4653213..4654343) /locus_tag="STM4413" /note="metallo-dependent hydrolase; Region: PRK12394" /db_xref="CDD:183497" misc_feature complement(order(4653525..4653527,4653705..4653707, 4653774..4653776,4654152..4654154,4654158..4654160)) /locus_tag="STM4413" /note="active site" /db_xref="CDD:238632" regulatory complement(4653187..4653192) /regulatory_class="ribosome_binding_site" /locus_tag="STM4413" /note="putative RBS for STM4412; RegulonDB:STMS1H004296" gene complement(4654756..4655298) /gene="ppa" /locus_tag="STM4414" /db_xref="GeneID:1255940" CDS complement(4654756..4655286) /gene="ppa" /locus_tag="STM4414" /EC_number="3.6.1.1" /note="similar to E. coli inorganic pyrophosphatase (AAC77183.1); Blastp hit to AAC77183.1 (176 aa), 94% identity in aa 1 - 176" /codon_start=1 /transl_table=11 /product="inorganic pyrophosphatase" /protein_id="NP_463275.1" /db_xref="GeneID:1255940" /translation="MSLLNVPAGKELPEDIYVVIEIPANADPIKYEVDKESGALFVDR FMSTAMFYPCNYGYINHTLSLDGDPVDVLVPTPYPLQPGAVIRCRPVGVLKMTDESGE DAKLVAVPHTKLSKEYDHIKDVNDLPELLKAQITHFFEHYKDLEKGKWVKVDGWDNAE AAKAEIVASFERAAKK" misc_feature complement(4654759..4655286) /gene="ppa" /locus_tag="STM4414" /note="inorganic diphosphatase; Region: PRK01250" /db_xref="CDD:179262" misc_feature complement(order(4655050..4655055,4655212..4655217)) /gene="ppa" /locus_tag="STM4414" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:238239" misc_feature complement(order(4654858..4654863,4655119..4655121, 4655155..4655157,4655197..4655199)) /gene="ppa" /locus_tag="STM4414" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:238239" misc_feature complement(order(4654978..4654980,4654993..4654995, 4655074..4655076,4655089..4655091,4655191..4655193)) /gene="ppa" /locus_tag="STM4414" /note="metal binding sites [ion binding]; metal-binding site" /db_xref="CDD:238239" regulatory complement(4655293..4655298) /regulatory_class="ribosome_binding_site" /gene="ppa" /locus_tag="STM4414" /note="putative RBS for ppa; RegulonDB:STMS1H004297" gene complement(4655513..4656524) /gene="fbp" /locus_tag="STM4415" /db_xref="GeneID:1255941" CDS complement(4655513..4656511) /gene="fbp" /locus_tag="STM4415" /EC_number="3.1.3.11" /note="similar to E. coli fructose-bisphosphatase (AAC77189.1); Blastp hit to AAC77189.1 (332 aa), 97% identity in aa 1 - 332" /codon_start=1 /transl_table=11 /product="fructose-bisphosphatase" /protein_id="NP_463276.1" /db_xref="GeneID:1255941" /translation="MKTLGEFIVEKQHEFSQATGELTALLSAIKLGAKIIHRDINKAG LVDILGASGAENVQGEVQQKLDLFANEKLKAALKARDIVAGIASEEEDEIVVFEGCEH AKYVVLMDPLDGSSNIDVNVSVGTIFSIYRRVTPVGTPVTEEDFLQPGNKQVAAGYVV YGSSTMLVYTTGCGVHAFTYDPSLGVFCLCQERMRFPEKGKTYSINEGNYIKFPNGVK KYIKFCQEEDSSTSRPYTSRYIGSLVADFHRNLLKGGIYLYPSTASHPQGKLRLLYEC NPMAFLAEQAGGKASDGKERILDIIPESLHQRRSFFVGNRHMVDDVERFIREYPDA" misc_feature complement(4655516..4656511) /gene="fbp" /locus_tag="STM4415" /note="Fructose-1,6-bisphosphatase [Carbohydrate transport and metabolism]; Region: Fbp; COG0158" /db_xref="CDD:439928" regulatory complement(4656519..4656524) /regulatory_class="ribosome_binding_site" /gene="fbp" /locus_tag="STM4415" /note="putative RBS for fbp; RegulonDB:STMS1H004298" gene 4656672..4658065 /gene="mpl" /locus_tag="STM4416" /db_xref="GeneID:1255942" regulatory 4656672..4656677 /regulatory_class="ribosome_binding_site" /gene="mpl" /locus_tag="STM4416" /note="putative RBS for mpl; RegulonDB:STMS1H004299" CDS 4656686..4658065 /gene="mpl" /locus_tag="STM4416" /EC_number="6.3.2.-" /note="similar to E. coli putative ligase (AAC77190.1); Blastp hit to AAC77190.1 (457 aa), 96% identity in aa 1 - 454" /codon_start=1 /transl_table=11 /product="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase" /protein_id="NP_463277.1" /db_xref="GeneID:1255942" /translation="MRIHILGICGTFMGGLAMLARSLGHEVTGSDANVYPPMSTLLEK QGIDLIQGYDASQLDPQPDLVIIGNAMTRGNPCVEAVLEKNIPFMSGPQWLHDFVLRD RWVLAVAGTHGKTTTAGMATWILEACGYKPGFVIGGVPGNFEVSARLGESPFFVIEAD EYDCAFFDKRSKFVHYCPRTLILNNLEFDHADIFDDLKAIQKQFHHLVRIVPGQGRII WPENDINLKQTMALGCWSEQELVGEQGHWQAKKLTTDASEWEVWLDGEKVGDVKWGLV GEHNMHNGLMAIAAARHVGVAPAEAASALGSFINARRRLELRGEANGVTVYDDFAHHP TAILATLAALRGKVGGTARIIAVLEPRSNTMKMGLCKDDLAPSLGRADEVFLLQPPHI PWQVAEVAEACVQPAHWSGDVDTLAEMVVKTAQPGDHILVMSNGGFGGIHQKLLDGLA KKAQNVTAY" misc_feature 4656689..4658035 /gene="mpl" /locus_tag="STM4416" /note="UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase; Region: mpl; TIGR01081" /db_xref="CDD:130153" gene 4658556..4659389 /locus_tag="STM4417" /db_xref="GeneID:1255943" CDS 4658556..4659389 /locus_tag="STM4417" /note="similar to E. coli orf, hypothetical protein (AAC75614.1); Blastp hit to AAC75614.1 (306 aa), 25% identity in aa 31 - 278" /codon_start=1 /transl_table=11 /product="putative transcriptional regulator" /protein_id="NP_463278.1" /db_xref="GeneID:1255943" /translation="MSKHQTQLSLLQDDIRSRYDSLSKRLKQVAQYILDNSNSVAFDT VASIAQHADVPPSTLIRFANAFGFSGFNEMKQVFRQHLMEETVSYTERARLFRQKNAD EGEPTPEKPGEILKLFSMVNAQVLQQLPVQIKNEQLDAAVNLLAKADNIYVIGLRRSF SVASYLTYALRHLERRAFLIDGIGGMFSEQLSMVSPDDVVIAISYSPYAQEVVELVEL GAKRGAHHIAITDSQVSPLAAFSEVCFVVREAQVDGFRSQVASMCLAQTLAVSLALAT E" misc_feature 4658586..4659386 /locus_tag="STM4417" /note="DNA-binding transcriptional regulator, MurR/RpiR family, contains HTH and SIS domains [Transcription]; Region: RpiR; COG1737" /db_xref="CDD:441343" gene complement(4659440..4660890) /locus_tag="STM4418" /db_xref="GeneID:1255944" CDS complement(4659440..4660873) /locus_tag="STM4418" /note="similar to E. coli xylose-proton symport (AAC77001.1); Blastp hit to AAC77001.1 (491 aa), 41% identity in aa 58 - 487, 47% identity in aa 5 - 103" /codon_start=1 /transl_table=11 /product="sugar (and other) transporter" /protein_id="NP_463279.1" /db_xref="GeneID:1255944" /translation="MSTSDSCYNTGYILRICAIAALGGILFGYDTAVISGAIGSLTSY FHLSPAETGWAVSCVVVGCVIGSFSAGYLSKRFGRKKSLMVSALLFTISAVGTSLSYT FTHFVIYRIIGGLAVGLAATVSPMYMSEVSPKNMRGRALSMQQFAIVFGQILIFYVNY KIASIAADTWLIELGWRYMFAAGIIPCILFCILVFLIPESPRWMMMIGREEETLKILT KISNEEHARHLLADIKTSLQNDQLNAHQKLNYRDGNVRFILILGCMIAMLQQVTGVNV MMYYAPIVLKDVTGSAQEALFQTIWIGVIQLIGSIIGAMIMDKMGRLSLMRKGTIGSI IGLLLTSWALYSQATGYFALFGMLFFMIFYALSWGVGAWVLISEIFPNRMRSQGMSIS VGFMWMANFLVSQFFPMINENPYLLSHFHGAFPMWIFAICCIFSYFFICRYLPETKGI SLEKMESVVLAKRRKKLQPIQTERYSD" misc_feature complement(4659536..4660831) /locus_tag="STM4418" /note="D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily; Region: MFS_XylE_like; cd17359" /db_xref="CDD:340917" misc_feature complement(order(4659674..4659676,4659683..4659688, 4659755..4659757,4659767..4659772,4659782..4659784, 4660037..4660042,4660049..4660054,4660064..4660069, 4660418..4660420,4660430..4660432,4660439..4660441, 4660793..4660795)) /locus_tag="STM4418" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340917" regulatory complement(4660885..4660890) /regulatory_class="ribosome_binding_site" /locus_tag="STM4418" /note="putative RBS for STM4418; RegulonDB:STMS1H004300" gene 4661326..4662768 /locus_tag="STM4419" /db_xref="GeneID:1255945" regulatory 4661326..4661331 /regulatory_class="ribosome_binding_site" /locus_tag="STM4419" /note="putative RBS for STM4419; RegulonDB:STMS1H004301" CDS 4661332..4662768 /locus_tag="STM4419" /note="similar to E. coli xylose-proton symport (AAC77001.1); Blastp hit to AAC77001.1 (491 aa), 33% identity in aa 58 - 486, 39% identity in aa 3 - 106" /codon_start=1 /transl_table=11 /product="sugar (and other) transporter" /protein_id="NP_463280.1" /db_xref="GeneID:1255945" /translation="MSQRSKYNSAYVYVLCCIAALAGLMFGYSTAVITGVVLPLQQYY QLTPTETGWAVSSIVIGCIIGALVGGKIADKLGRKPALLIIAIIFIASSLGAAMSESF MIFSLSRIVCGFAVGMAGTASTMYMSELAPAEIRGKALGIYNISVVSGQVIVFIVNYL IAKGMPADVLVSQGWKTMLFAQVVPSIAMLAITLFLPESPAWCARNNRSEARSIKVLT RIYSGLTATDVAAIFDSMKETVRSQDNVAGGERTNLKSSPVLRYILLVGCCIAVLQQF TGVNVMNYYAPLVLQNSSTEVVMFQTIFIAVCNVVGSFIGMILFDRYGRIPIMKIGTI GSIVGLLIASYGLYTHDTGYITIFGILFFMLLFAVSWSVGAWVLISEVFPEKIKGFGM GLAVSLMWIANFLISLLFPVINDNAWLQETFGGAFSMWIFVVFNLVCYVFISRYVPET KGVPLTEIERLAENKLREIQGKRRDVIA" misc_feature 4661374..4662678 /locus_tag="STM4419" /note="D-xylose-proton symporter and similar transporters of the Major Facilitator Superfamily; Region: MFS_XylE_like; cd17359" /db_xref="CDD:340917" misc_feature order(4661407..4661409,4661761..4661763,4661770..4661772, 4661782..4661784,4662151..4662156,4662166..4662171, 4662178..4662183,4662430..4662432,4662442..4662447, 4662457..4662459,4662526..4662531,4662538..4662540) /locus_tag="STM4419" /note="chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340917" gene complement(4663121..4663938) /locus_tag="STM4420" /db_xref="GeneID:1255946" CDS complement(4663121..4663930) /locus_tag="STM4420" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463281.1" /db_xref="GeneID:1255946" /translation="MANLLSTCTSESGNIQHISPQNAGWEYVGFDVWQLKAGESITLP SDERERCLVLVAGLASVKAADSFFYRIGQRMSPFERIPAYSVYLPHHTEAKVTAETDL ELAVCSAPGFGELPVRLISPQEVGVEHRGKGRNQRLVHNILPDSQLADSLLVVEVYTN EGDTSSWPAHKHDTAVEGQETYLEETYYHRFNPPQGFCLQRVYTDDRSLDECMAVYNR DVVKVPKGYHPVATIAGYDNYYLNVMAGPLRKWRFTWEENHAWINSPDYPR" misc_feature complement(4663124..4663930) /locus_tag="STM4420" /note="5-deoxy-D-glucuronate isomerase [Carbohydrate transport and metabolism]; Region: IolB; COG3718" /db_xref="CDD:442932" regulatory complement(4663933..4663938) /regulatory_class="ribosome_binding_site" /locus_tag="STM4420" /note="putative RBS for STM4420; RegulonDB:STMS1H004302" gene complement(4663955..4665467) /locus_tag="STM4421" /db_xref="GeneID:1255947" CDS complement(4663955..4665460) /locus_tag="STM4421" /EC_number="1.2.1.27" /note="similar to E. coli phenylacetaldehyde dehydrogenase (AAC74467.1); Blastp hit to AAC74467.1 (500 aa), 34% identity in aa 22 - 500" /codon_start=1 /transl_table=11 /product="putative NAD-dependent aldehyde dehydrogenase" /protein_id="NP_463282.1" /db_xref="GeneID:1255947" /translation="METVGNFIHGKTTLSSSGETLPVTNPATGKVIRQVTQSTREEML AAIQSAHEAFPAWSKMTPLRRARILFEFKVLLEKHRDELAALIVSEHGKVWSDALGEL TRGIEVVEFACGIPHLSKGEYSFNVGSGVDSFSLMQPLGVVAGITPFNFPAMVPMWMF PVALACGNTFVLKPPALVPSASLRMAQLLQEASLPDGVFNVVHCGNEAASLLTSDPRV QAVSFVGSSAVAEHIYTTASAHGKRVQAFGAAKNHAIVMPDADLDATVNAIMGGAFGS AGERCMALPVVVAVGDETADRLIERLKPLIAALRIGPGELRGKDENEMGPVVSRAHQQ KVLGYIDKGVSEGATLVMDGRNYSVAGYPEGFYVGGTLFDNVTPEMTIWREEIFGPVL GIVRVPDYATAISTVNSHEFGNGSVIFTTNGHYAREFAQSVEAGMVGINIPVPVPMAF HSFGGWKRSVFGALNVHGPDGVRFYTRMKTVTSRWPNGQQIVSEFSMPTLG" misc_feature complement(4664006..4665451) /locus_tag="STM4421" /note="Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2; Region: ALDH_F6_MMSDH; cd07085" /db_xref="CDD:143404" misc_feature complement(order(4664006..4664011,4664015..4664032, 4664051..4664053,4664093..4664095,4664099..4664101, 4664111..4664113,4664138..4664149,4664153..4664155, 4664159..4664164,4664171..4664173,4664180..4664185, 4664189..4664194,4664198..4664200,4664732..4664734, 4664738..4664740,4664747..4664749,4664756..4664758, 4664768..4664770,4665047..4665049,4665056..4665058, 4665065..4665067,4665080..4665103,4665128..4665133, 4665140..4665142,4665239..4665241,4665251..4665253, 4665260..4665262,4665272..4665274,4665278..4665280)) /locus_tag="STM4421" /note="tetrameric interface [polypeptide binding]; other site" /db_xref="CDD:143404" misc_feature complement(order(4664219..4664221,4664297..4664299, 4664303..4664305,4664618..4664620,4664714..4664722, 4664774..4664776,4664783..4664794,4664843..4664845, 4664933..4664935,4664942..4664944,4664987..4664989, 4665011..4665022)) /locus_tag="STM4421" /note="NAD binding site [chemical binding]; other site" /db_xref="CDD:143404" misc_feature complement(order(4664618..4664620,4664627..4664629, 4664720..4664722,4665011..4665013)) /locus_tag="STM4421" /note="catalytic residues [active]" /db_xref="CDD:143404" regulatory complement(4665462..4665467) /regulatory_class="ribosome_binding_site" /locus_tag="STM4421" /note="putative RBS for STM4421; RegulonDB:STMS1H004303" gene complement(4665476..4665778) /locus_tag="STM4422" /db_xref="GeneID:1255948" CDS complement(4665476..4665778) /locus_tag="STM4422" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_453693.1" /db_xref="GeneID:1255948" /translation="MKQKCYIDHNFFQIFPRHNRQPLMTHQIKTIKINKLIIFLISCC TYPRIKISRQTFKIKFHKNKFEIFNPKIYIEYGMRFRLKITRLSCDRSVRTSSTSV" gene 4665896..4666725 /locus_tag="STM4423" /db_xref="GeneID:1255949" regulatory 4665896..4665901 /regulatory_class="ribosome_binding_site" /locus_tag="STM4423" /note="putative RBS for STM4423; RegulonDB:STMS1H004304" CDS 4665901..4666725 /locus_tag="STM4423" /note="similar to E. coli putative ARAC-type regulatory protein (AAC74766.1); Blastp hit to AAC74766.1 (303 aa), 27% identity in aa 38 - 283" /codon_start=1 /transl_table=11 /product="putative AraC-type DNA-binding domain-containing protein" /protein_id="NP_463284.1" /db_xref="GeneID:1255949" /translation="MAYVSQVSESNGPFVRFMHMHPQTVELILITEGDGEYFIGDRIY PVRKGDLVIYNSQVVHDEYLESGRPIGTICCGINNISCPGLRENALIPDDIVPVIPLY HHYATVEKLMSSVFTVINQHAVEGPAMAQLLTQVVLKYIEGNVLLRTGNDAIQRHENL LDSIKSYIDRNFYEPIRLDTLATKFNVSPYYVSHEFKRRYGYSPMDYLIKRRLGEAQS LLTTDEGGREKITSIAYRVGFSNLSHFQNYFKNKVGKTPGQYRKDYRKANYLLFEY" misc_feature 4665946..4666704 /locus_tag="STM4423" /note="AraC-type DNA-binding domain and AraC-containing proteins [Transcription]; Region: AraC; COG2207" /db_xref="CDD:441809" gene 4666985..4667905 /locus_tag="STM4424" /db_xref="GeneID:1255950" CDS 4666985..4667905 /locus_tag="STM4424" /codon_start=1 /transl_table=11 /product="putative endonuclease" /protein_id="NP_463285.3" /db_xref="GeneID:1255950" /translation="MGASNMYNVKKSIKLGIAPIGWRNDDIPEIGKENTYKQILSDAA LTGFSGTEVGGCYPQDPAELNKELMLRGLEIPGQWFSSFIIRDGIASAMNAFEQHCAY LQAIHAYVAVVSEQTYSIQGIIDKCVYTEKPNFSDSEWQLLCEGLNALGKIANAHGLK LAFHHHMGTGVQTLPEVDRLMENTDPQFVHLLFDTGHIYVSDGDVMPLLSKHFDRIKH VHFKDVRNEKLKACRLAKKSFLNSFLDGVFTVPGDGNIDFKSVLAYLVGHQYSGWIVV EAEQDPKKYNPLEYAQKGKKHIDELLKNYL" misc_feature 4667018..4667890 /locus_tag="STM4424" /note="C-terminal fragment of effector protein VpdB; Region: VpdB_C; cl30226" /db_xref="CDD:421976" misc_feature order(4667525..4667527,4667534..4667539,4667546..4667554, 4667558..4667563,4667567..4667575,4667579..4667584, 4667597..4667608,4667627..4667629,4667816..4667821, 4667828..4667833) /locus_tag="STM4424" /note="LvgA binding site [polypeptide binding]; other site" /db_xref="CDD:408997" gene 4667917..4668934 /locus_tag="STM4425" /db_xref="GeneID:1255951" regulatory 4667917..4667922 /regulatory_class="ribosome_binding_site" /locus_tag="STM4425" /note="putative RBS for STM4425; RegulonDB:STMS1H004305" CDS 4667924..4668934 /locus_tag="STM4425" /note="similar to E. coli putative dehydrogenase (AAC77236.1); Blastp hit to AAC77236.1 (377 aa), 26% identity in aa 10 - 197" /codon_start=1 /transl_table=11 /product="putative dehydrogenase" /protein_id="NP_463286.1" /db_xref="GeneID:1255951" /translation="MTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAA LDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVT AADCQRVIEAEQKNGKRMVQIGFMRRYDKGYVQLKNIIDSGEIGQPLMVHGRHYNAST VPEYKTPQAIYETLIHEIDVMHWLLNEDYKTVKVYFPRQSSLVTTLRDPQLVVMETTS GINIVVEVFVNCQYGYDIHCDVTGEKGMAELPTVASAAVRKAAKYSTDILVDWKQRFI DAYDIEFQDFFDRLNAGLPPAGPTSWDGYLAAVTADACVKSQETGNTEIVELPSKPDF YK" misc_feature 4667924..4668913 /locus_tag="STM4425" /note="Predicted dehydrogenase [General function prediction only]; Region: MviM; COG0673" /db_xref="CDD:440437" gene 4669025..4670374 /gene="srfJ" /locus_tag="STM4426" /db_xref="GeneID:1255952" regulatory 4669025..4669030 /regulatory_class="ribosome_binding_site" /gene="srfJ" /locus_tag="STM4426" /note="putative RBS for srfJ; RegulonDB:STMS1H004306" CDS 4669031..4670374 /gene="srfJ" /locus_tag="STM4426" /note="similar to Homo sapiens lysosomal glucosyl ceramidase; SrfJ (gi|8347262)" /codon_start=1 /transl_table=11 /product="activated by transcription factor SsrB" /protein_id="NP_463287.1" /db_xref="GeneID:1255952" /translation="MKGRLISSDPYRQQFLVERAVSFSHRQRDCSELISVLPRHALQQ IDGFGGSFTEGAGVVFNSMSEKTKAQFLSLYFSAQEHNYTLARMPIQSCDFSLGNYAY VDSSADLQQGRLSFSRDEAHLIPLISGALRLNPHMKLMASPWSPPAFMKTNNDMNGGG KLRRECYADWADIIINYLLEYRRHGINVQALSVQNEPVAVKTWDSCLYSVEEETAFAV QYLRPRLARQGMDEMEIYIWDHDKDGLVDWAELAFADEANYKGINGLAFHWYTGDHFS QIQYLAQCLPDKKLLFSEGCVPMESDAGSQIRHWHTYLHDMIGNFKSGCSGFIDWNLL LNSEGGPNHQGNLCEAPIQYDAQNDVLRRNHSWYGIGHFCRYVRPGARVMLSSSYDNL LEEVGFVNPDGERVLVVYNRDVQERRCRVLDGDKEIALTLPPSGASTLLWRQESI" misc_feature 4669064..4670356 /gene="srfJ" /locus_tag="STM4426" /note="O-Glycosyl hydrolase [Cell wall/membrane/envelope biogenesis]; Region: XynC; COG5520" /db_xref="CDD:444271" gene 4670367..4671208 /locus_tag="STM4427" /db_xref="GeneID:1255953" regulatory 4670367..4670372 /regulatory_class="ribosome_binding_site" /locus_tag="STM4427" /note="putative RBS for STM4427; RegulonDB:STMS1H004307" CDS 4670375..4671208 /locus_tag="STM4427" /codon_start=1 /transl_table=11 /product="putative endonuclease" /protein_id="NP_463288.1" /db_xref="GeneID:1255953" /translation="MMKLGFNEATCMRNSTLAQDVVLAERFGYDYIEIRLDMLQEWLQ KHTLSELADIFAVGHLKPWGYNSLEDITFCDSESWAEKLRQLAFACHAGSVVGGDCLV VVPTIRQGGNFPPGETVKDSVKRLREMAAVAEESRMRLAFEPIGSAGCCVRSLAMAME IVDAVDRSNVGLVVDAFNLYLHDQWRDLTTLRQIPVEKIFVYHIDDADNLPLATLEHC HRLFPGNGVIPLHEITHELVQKGYEGICSLELFNPGYWQMAASEVFAIGAEKTRPFLT A" misc_feature 4670378..4671199 /locus_tag="STM4427" /note="Sugar phosphate isomerase/epimerase [Carbohydrate transport and metabolism]; Region: YcjR; COG1082" /db_xref="CDD:440699" gene complement(4671205..4672377) /locus_tag="STM4428" /db_xref="GeneID:1255954" CDS complement(4671205..4672371) /locus_tag="STM4428" /note="similar to E. coli putative transport protein (AAC75382.1); Blastp hit to AAC75382.1 (392 aa), 48% identity in aa 9 - 391" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_463289.1" /db_xref="GeneID:1255954" /translation="MPALTQHSTSITLFRISAAMFLNYLTIGIPLVMLPLYVQQQLHL SDLLIGIAVGSQFIATLLTRGAAGRKADTSGGRRTVITGQFYCAASGLLMLVSLIAHP VPLLAWAILIVGRVLLGIGESFILTGNLTWGMWLAGSTHAGQVISWNGMATYGALAIG APLGLSLYARAGLALPALLVVLLPIIASGVIYGIPGNIPTARPRVPVLRVVGLVWRPG TGLVLQGIGFATLSAFTALWFNERHWDNTGFAMTLFGIAFIAVRFFCAKFPDRYGGAT VATFSLLVEGTGLAVMWAAPSAGAALIGAAITGCGCSLMFPSLGVEVVRRVPPEIRGT ALGVWSAFQDLAYGFTGPIAGLLTPFIGYQQVFLLAAACALLGAAVVHLLLRQH" misc_feature complement(4671208..4672371) /locus_tag="STM4428" /note="major facilitator superfamily transporter; Provisional; Region: PRK05122" /db_xref="CDD:235348" regulatory complement(4672372..4672377) /regulatory_class="ribosome_binding_site" /locus_tag="STM4428" /note="putative RBS for STM4428; RegulonDB:STMS1H004308" gene complement(4672432..4674369) /locus_tag="STM4430" /db_xref="GeneID:1255956" CDS complement(4672432..4674369) /locus_tag="STM4430" /note="ribokinase family" /codon_start=1 /transl_table=11 /product="putative sugar kinase" /protein_id="NP_453701.1" /db_xref="GeneID:1255956" /translation="MSMNKAVSSEQKPLDVICLGRVAVDLYGQQIGSRLEDMTTFAKY LGGSSGNVAYGTAIQGLRSAMLARVGDEHMGRFVREELNRVGVDTQCLLSDRDRLTAL VILGIKDQDTFPLIFYRDNCADMALTPEDIREDYIASSRALAVTGTHLSHPNTRAAVL KALEYAQKHGLRRALDIDYRPVLWGLTSLGDGETRFIASSQVTEQLQQVLRHFDLIVG TEEEFHIAGGSTDTLTALRRVRQLTQAVLVCKRGALGCSVFEGNIADDWSQVKIHSGV RVDVLNVLGAGDAFMSGLLRGYLNDESWEQACRYANACGALVVSRHGCAPAMPTKKEL DDYLAREQSITRPDKDPRLNHLHRVTTRKQHWPELCVFAFDHRKQLVDIANEVGASES AIPPLKMLLLEGARQAALEAGLQNNSGILADTTFGQQALNDVTGQGWWIGRPVEMPGS YPLKLEHGDIGSQLVSWPQEHVVKCLVFYHPLDAESVRLEQEALIDEVYRACCQSGHD LLLEVILPRDAADQNEQYYPQIVERFYQLGILPDWWKLPPLSPDRWREISQHIEHYDP ECRGILILGLDAPESELKSGFAAAADMPWVKGFAVGRTIFGEPSRQWLGGQLNDEQLI ATVKQKYRMLIDYWREYRPAR" misc_feature complement(4672435..4674339) /locus_tag="STM4430" /note="Myo-inositol catabolism protein LolC [Carbohydrate transport and metabolism]; Region: IolC; COG3892" /db_xref="CDD:443099" gene complement(4672432..4673232) /locus_tag="STM4429" /db_xref="GeneID:1255955" CDS complement(4672432..4673232) /locus_tag="STM4429" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_453700.1" /db_xref="GeneID:1255955" /translation="MVDIANEVGASESAIPPLKMLLLEGARQAALEAGLQNNSGILAD TTFGQQALNDVTGQGWWIGRPVEMPGSYPLKLEHGDIGSQLVSWPQEHVVKCLVFYHP LDAESVRLEQEALIDEVYRACCQSGHDLLLEVILPRDAADQNEQYYPQIVERFYQLGI LPDWWKLPPLSPDRWREISQHIEHYDPECRGILILGLDAPESELKSGFAAAADMPWVK GFAVGRTIFGEPSRQWLGGQLNDEQLIATVKQKYRMLIDYWREYRPAR" misc_feature complement(4672435..>4673232) /locus_tag="STM4429" /note="Myo-inositol catabolism protein LolC [Carbohydrate transport and metabolism]; Region: IolC; COG3892" /db_xref="CDD:443099" regulatory complement(4674369..4674374) /regulatory_class="ribosome_binding_site" /note="putative RBS for STM4430; RegulonDB:STMS1H004309" regulatory 4674779..4674784 /regulatory_class="ribosome_binding_site" /note="putative RBS for STM4431; RegulonDB:STMS1H004310" gene 4674786..4676726 /locus_tag="STM4431" /db_xref="GeneID:2673766" CDS 4674786..4676726 /locus_tag="STM4431" /note="similar to E. coli acetolactate synthase I, valine-sensitive, large subunit (AAC76694.1); Blastp hit to AAC76694.1 (562 aa), 27% identity in aa 26 - 326, 34% identity in aa 12 - 126" /codon_start=1 /transl_table=11 /product="putative thiamine pyrophosphate-requiring enzyme" /protein_id="NP_453702.1" /db_xref="GeneID:2673766" /translation="MKTIRLTMAQALVRFLDNQYIDVDGSEIKFVKGIFAIFGHGNVV GLGQALEEDCGQLSVHQGRNEQGMAHIATGFARQMRRHQIYACTSSVGPGAANMITAA ATATANRIPLLLLPGDVYASRQPDPVLQQVEQEHDLTLSTNDAFRAVSRYWDRITRPE QLMSACISAMRVLTDPADTGAVTLCLPQDVQGEAWDYPDYFFARRVYRLERHAPTEPM LNEAVALIRRHQRPLIVCGGGVKYSQAEEALLRFAERCHLPIAETQAGKGALSSAHPL NVGGIGETGSLAANLLAQEADLIIGVGTRYTDFTTSSKWIFQNPDVRYLNINVSRFDV FKLDGVQMQGDARVALTQLSERLAQEHYASQWGETIHRVRSQYMAEVERVYAVEYSGE GFKPEIEDHMDTQKVFEEFNEITRSWLTQTRVLGVLNRMLPENALVVAAAGSLPGDLQ RVWQSRGENDYHVEYGYSCMGYEVNAALGAKLAQPEREVYSFVGDGSFMMLHSELVTS VQMGKKITVILLDNMTNGCINNLQMEHGMDSYFTEFRFHQQESGRQEGGFIPVDFARI AEGYGCKSYRVTTIEQLHEALEDARKQTVSTLIDIKVLPKTMVHKYLSWWRVGGAQVS RSERIQAVARMLEEHIGQARQY" misc_feature 4674786..4676723 /locus_tag="STM4431" /note="TPP-dependent trihydroxycyclohexane-1,2-dione (THcHDO) dehydratase, myo-inositol metabolism [Carbohydrate transport and metabolism]; Region: IolD; COG3962" /db_xref="CDD:443162" gene 4675917..4676726 /locus_tag="STM4432" /db_xref="GeneID:1255958" CDS 4675917..4676726 /locus_tag="STM4432" /note="similar to E. coli glyoxylate carboligase (AAC73609.1); Blastp hit to AAC73609.1 (593 aa), 33% identity in aa 421 - 539" /codon_start=1 /transl_table=11 /product="putative thiamine pyrophosphate-requiring enzyme" /protein_id="NP_453703.1" /db_xref="GeneID:1255958" /translation="MAEVERVYAVEYSGEGFKPEIEDHMDTQKVFEEFNEITRSWLTQ TRVLGVLNRMLPENALVVAAAGSLPGDLQRVWQSRGENDYHVEYGYSCMGYEVNAALG AKLAQPEREVYSFVGDGSFMMLHSELVTSVQMGKKITVILLDNMTNGCINNLQMEHGM DSYFTEFRFHQQESGRQEGGFIPVDFARIAEGYGCKSYRVTTIEQLHEALEDARKQTV STLIDIKVLPKTMVHKYLSWWRVGGAQVSRSERIQAVARMLEEHIGQARQY" misc_feature <4675917..4676723 /locus_tag="STM4432" /note="TPP-dependent trihydroxycyclohexane-1,2-dione (THcHDO) dehydratase, myo-inositol metabolism [Carbohydrate transport and metabolism]; Region: IolD; COG3962" /db_xref="CDD:443162" gene 4676901..4677929 /locus_tag="STM4433" /db_xref="GeneID:1255959" regulatory 4676901..4676906 /regulatory_class="ribosome_binding_site" /locus_tag="STM4433" /note="putative RBS for STM4433; RegulonDB:STMS1H004311" CDS 4676907..4677929 /locus_tag="STM4433" /note="oxidoreductase family; similar to E. coli putative virulence factor (AAC74152.1); Blastp hit to AAC74152.1 (307 aa), 29% identity in aa 1 - 188, 52% identity in aa 272 - 296" /codon_start=1 /transl_table=11 /product="putative thiamine pyrophosphate-requiring enzyme" /protein_id="NP_463294.1" /db_xref="GeneID:1255959" /translation="MKKLRCGVIGLGRVGKMHVENMYLLPQLDIICAADYFIEEMSDW LYSVNITSGYKNYQELLQRDDIEAVFIFTSTDMHEEIVTAAAQAGKHIFCEKPLSMNE DEQASMAVLRKVKEKGVTLQVAFNRRFDPQFHEVFELVRSGKIGRPQMIKITSRDPDL LPHDLIKRIGGLIFDFTMHDFDMARFMMQDEVSEVYVKGNTLIDPSLKNIDDVDTLAV MLTFRNGGYALIDNSRRAVYGYDQRVEVFGSEGMAYADNVSESTVKVFNSQHCIMKNP LPDFTVRYREAYRTEILHFIDSVLHHTPVVCTGEDALLAQRIAIAAQQSLKSGLPVKI TSDIYL" misc_feature 4676913..4677905 /locus_tag="STM4433" /note="inositol 2-dehydrogenase; Region: myo_inos_iolG; TIGR04380" /db_xref="CDD:275173" gene 4677995..4679228 /locus_tag="STM4434" /db_xref="GeneID:1255960" regulatory 4677995..4678000 /regulatory_class="ribosome_binding_site" /locus_tag="STM4434" /note="putative RBS for STM4434; RegulonDB:STMS1H004312" CDS 4678002..4679228 /locus_tag="STM4434" /note="similar to E. coli putative transport protein (AAC77235.1); Blastp hit to AAC77235.1 (425 aa), 22% identity in aa 167 - 417, 21% identity in aa 40 - 145" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_463295.1" /db_xref="GeneID:1255960" /translation="MKEMQATLPQTFYIKPGKFIWSYLGTFLFMLGGCIENSWLSAWL NTQGFDQAHIGQIFAGYGIVVAITSWLSGVCVDVFGPKKVMVTGFIVYLLASVAFLNF ALPSHDFGAILVTYMLRGVGYPLVCYSFLVRLTIQLDNHQQGIGTSLFWVVYNLGFTI IGPVVAASLIPELGHINVMWAGMGVALLGVLFMLVLERNEFILKPRTTPVFKELSAGI SIMYERPRIGLAVIVKTINGLGTYGFVVVLPLFLLDKHFTLEEWASIWGITFISNQVF NIIFGWMGDKIGFRRTIQIFGSILTGVATLIVYWVPMIWGHNYVAFMLAMCLWGAGLA GFVPMTPLVPMMAPDKKGAANSAVNFGSGLGNFVGPALVSVLAGFGTGVVMYTMAGLY LFSGILVQFLKVPGEK" misc_feature 4678062..4679210 /locus_tag="STM4434" /note="CsbX family of the Major Facilitator Superfamily of transporters; Region: MFS_CsbX; cd17337" /db_xref="CDD:340895" misc_feature order(4678098..4678103,4678110..4678115,4678122..4678124, 4678206..4678208,4678368..4678373,4678377..4678385, 4678392..4678394,4678455..4678457,4678464..4678469, 4678476..4678478,4678701..4678703,4678710..4678715, 4678722..4678730,4678737..4678739,4678818..4678820, 4678830..4678832,4678995..4679000,4679010..4679012, 4679022..4679024,4679064..4679066,4679073..4679078, 4679085..4679090,4679097..4679099) /locus_tag="STM4434" /note="putative chemical substrate binding pocket [chemical binding]; other site" /db_xref="CDD:340895" gene 4679383..4680204 /locus_tag="STM4435" /db_xref="GeneID:1255961" regulatory 4679383..4679388 /regulatory_class="ribosome_binding_site" /locus_tag="STM4435" /note="putative RBS for STM4435; RegulonDB:STMS1H004313" CDS 4679389..4680204 /locus_tag="STM4435" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463296.1" /db_xref="GeneID:1255961" /translation="MNIEKTRFCINRKIAPGLSIEAFFRLVKRLEFNKVELRNDMPSG SVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGARALV LCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREA GSPFKVLLDTFHHHLYEEAEKEFASRIDISAIGLVHLSGVEDTRPTEALADEQRIMLS EKDVMQNYQQVQRLENMGYRGIYAFEPFSSQLASWSEAEIEEQINRSVSLLLQ" misc_feature 4679389..4680201 /locus_tag="STM4435" /note="Predicted sugar epimerase, xylose isomerase-like family [Carbohydrate transport and metabolism]; Region: COG4130" /db_xref="CDD:443306" gene 4680252..4681141 /locus_tag="STM4436" /db_xref="GeneID:1255962" regulatory 4680252..4680257 /regulatory_class="ribosome_binding_site" /locus_tag="STM4436" /note="putative RBS for STM4436; RegulonDB:STMS1H004314" CDS 4680257..4681141 /locus_tag="STM4436" /codon_start=1 /transl_table=11 /product="putative endonuclease" /protein_id="NP_463297.1" /db_xref="GeneID:1255962" /translation="MKIAFDVDVIKHLPITQMVRQVSEWGYKYIEQSPHPRINPFYKH PKAGRDTMQEYKRALQNYGVEISSFIVVYRWSGPDEERRRAAVTNWKRMIEIAVDMGV QVINTELSGTPDEPEICEEMWYRSMEELLPIVEREGIRIEIQSHPWDFCELNDETVDM VQSLRSDNVTYLYSAPHGFFYDKGQGDVARMLNYAGADLSHVLLADTHNHTLPCRYIM NPPGVNATIHQHIGLGEGEVDFDALFQALREMDFANRTFKVGGEAIITTSLFGYPEKM SVQAVETRERIERELLGR" misc_feature 4680311..4681018 /locus_tag="STM4436" /note="Xylose isomerase-like TIM barrel; Region: AP_endonuc_2; pfam01261" /db_xref="CDD:426164" gene complement(4681197..4681760) /gene="yjgA" /locus_tag="STM4437" /db_xref="GeneID:1255963" CDS complement(4681197..4681748) /gene="yjgA" /locus_tag="STM4437" /note="similar to E. coli putative alpha helix protein (AAC77191.1); Blastp hit to AAC77191.1 (183 aa), 95% identity in aa 1 - 183" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463298.1" /db_xref="GeneID:1255963" /translation="MTKQPEDWLDDVPGDDIEDEDDEIIWVSKSEIKRDAEELKRLGA ELVDLGKNALDKIPLDADLRDAIELAQRIKMEGRRRQLQLIGKMLRQRDVEPIRQALD KLKNRHNQQVVLFHKLEHLRDRLIVEGDDAVAEVLTLWPHADRQQLRSLIRNAKKEKE GNKPPKSARQIFQYLRELAENEG" misc_feature complement(4681209..4681718) /gene="yjgA" /locus_tag="STM4437" /note="ribosome-associated protein; Region: PRK05255" /db_xref="CDD:235377" regulatory complement(4681755..4681760) /regulatory_class="ribosome_binding_site" /gene="yjgA" /locus_tag="STM4437" /note="putative RBS for yjgA; RegulonDB:STMS1H004315" gene 4681825..4683196 /gene="pmbA" /locus_tag="STM4438" /db_xref="GeneID:1255964" regulatory 4681825..4681830 /regulatory_class="ribosome_binding_site" /gene="pmbA" /locus_tag="STM4438" /note="putative RBS for pmbA; RegulonDB:STMS1H004316" CDS 4681844..4683196 /gene="pmbA" /locus_tag="STM4438" /note="maturation of antibiotic MccB17; see tld genes; similar to E. coli maturation of antibiotic MccB17, see tld genes (AAC77192.1); Blastp hit to AAC77192.1 (450 aa), 95% identity in aa 1 - 450" /codon_start=1 /transl_table=11 /product="putative peptide maturation protein" /protein_id="NP_463299.1" /db_xref="GeneID:1255964" /translation="MAFAMKVISQVEAQRKILEEAVSTALELASGKSDGAEVAVSKTT GISVSTRYGEVENVEFNSDGALGITVYHQNRKGSASSTDLSPQAIARTVQAALDIARY TSPDPCAGVADKELLAFDAPDLDLFHPAEVTPDEAIELAARAEQASLKADKRITNTEG GSFNSHYGIKVFGNSHGMLQGYCSTRHSLSSCVIAEENGDMERDYAYTIGRAMADLQA PEWVGAECARRTLSRLSPRKLSTMKAPVIFANEVATGLFGHLVGAIAGGAVYRKSTFL LDSLGKQILPEWLTIEEHPHLLKGLASSPFDSEGVRTERRDIVKDGVLTQWLLTNYSA RKLGLKSTGHAGGIHNWRIAGQGLNFEQLLKEMGTGLVVTELMGQGVSGITGDYSRGA AGFWVENGEIQYPVSEITIAGNLKEMWRNIVTVGDDIETRSNIQCGSVLLPEMKIAGQ " misc_feature 4681856..4683193 /gene="pmbA" /locus_tag="STM4438" /note="peptidase PmbA; Provisional; Region: PRK11040" /db_xref="CDD:182922" gene 4683282..4683681 /gene="cybC" /locus_tag="STM4439" /db_xref="GeneID:1255965" regulatory 4683282..4683287 /regulatory_class="ribosome_binding_site" /gene="cybC" /locus_tag="STM4439" /note="putative RBS for cybC; RegulonDB:STMS1H004317" CDS 4683295..4683681 /gene="cybC" /locus_tag="STM4439" /note="similar to E. coli cytochrome b(562) (AAC77193.1); Blastp hit to AAC77193.1 (100 aa), 86% identity in aa 1 - 100" /codon_start=1 /transl_table=11 /product="cytochrome b(562)" /protein_id="NP_463300.1" /db_xref="GeneID:1255965" /translation="MRKSLLAILAVSSLVFGSAVFAADLEDNMDILNDNLKVVEKTDS APELKAALTKMRAAALDAQKATPPKLEDKAPDSPEMKDFRHGFDILVGQIDGALKLAN EGNVKEAKAAAEALKTTRNTYHKKYR" misc_feature 4683295..4683678 /gene="cybC" /locus_tag="STM4439" /note="cytochrome b562; Provisional; Region: PRK15058" /db_xref="CDD:185018" gene 4683959..4684297 /locus_tag="STM4440" /db_xref="GeneID:1255966" CDS 4683959..4684297 /locus_tag="STM4440" /note="nitrogen regulation protein nr(ii) (SW:NTRB_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463301.1" /db_xref="GeneID:1255966" /translation="MRRVDNGAVKHDAGERINELAEQVLTQVDGLLGRHHIVPNAVQT QMLTSHVRAMAHRSITGEPLPEVDASLFDEISAESMALAREIVAAFGNLPDEEAWLLS VHFEVAKDNL" misc_feature 4683971..4684291 /locus_tag="STM4440" /note="PRD domain protein EF_0829/AHA_3910; Region: EF_0829; TIGR03582" /db_xref="CDD:132621" gene 4684301..4684670 /locus_tag="STM4441" /db_xref="GeneID:1255967" regulatory 4684301..4684306 /regulatory_class="ribosome_binding_site" /locus_tag="STM4441" /note="putative RBS for STM4441; RegulonDB:STMS1H004318" CDS 4684308..4684670 /locus_tag="STM4441" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463302.1" /db_xref="GeneID:1255967" /translation="MEQITVVIGDRLGKGQKVAAGVEKAGGRAVVVPGVAADMKLGDV MKAENATFGISFCGSGGAGAITAQNKHGYKAKYGMRSVDEGVTAINEGCNVLGFGFMD KEELGERLVQAWQKKYGA" misc_feature 4684317..4684661 /locus_tag="STM4441" /note="conserved hypothetical protein EF_0830/AHA_3911; Region: EF_0830; TIGR03577" /db_xref="CDD:132616" gene 4684666..4684972 /locus_tag="STM4442" /db_xref="GeneID:1255968" regulatory 4684666..4684671 /regulatory_class="ribosome_binding_site" /locus_tag="STM4442" /note="putative RBS for STM4442; RegulonDB:STMS1H004319" CDS 4684670..4684972 /locus_tag="STM4442" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463303.1" /db_xref="GeneID:1255968" /translation="MMKEQFTTTVRVKGKGDAKARAFADALNHVQSAVMRESPYILLR IEPQDVRIVQAHESVRKEAFLFFFLRRERRTYSVELDVTVNVTAINLDRVDFVAKR" misc_feature 4684676..4684963 /locus_tag="STM4442" /note="conserved hypothetical protein EF_0831/AHA_3912; Region: EF_0831; TIGR03578" /db_xref="CDD:213831" gene 4684990..4685771 /locus_tag="STM4443" /db_xref="GeneID:1255969" regulatory 4684990..4684995 /regulatory_class="ribosome_binding_site" /locus_tag="STM4443" /note="putative RBS for STM4443; RegulonDB:STMS1H004320" CDS 4684995..4685771 /locus_tag="STM4443" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463304.1" /db_xref="GeneID:1255969" /translation="MFLIILIKSLIIGALVGVGVGAGAARMFHAPTTQGMGAFRTLGE LNSCEGDPASHFSFGLGFFFNAWASSVAAGSFTQDVDHRIIPNWGAAALMIKNRNVGE TLHDPKKMAIACAVIGMIVVTFLNLTASSVPEALQVTAVKVLVPAANLLVNIVMPVIF WLAAIDAGKKSGFWATVFGGAAQLIMGNAVPGLVLGILIGKGVEESGWNHVTKVMMVA IVLLFVLSGFFRGFDMKMIESFNMTVPNWLELIHNSLSGK" misc_feature 4685070..4685768 /locus_tag="STM4443" /note="conserved hypothetical protein EF_0832/AHA_3913; Region: EF_0832; TIGR03580" /db_xref="CDD:274659" gene 4685777..4686427 /locus_tag="STM4444" /db_xref="GeneID:1255970" regulatory 4685777..4685782 /regulatory_class="ribosome_binding_site" /locus_tag="STM4444" /note="putative RBS for STM4444; RegulonDB:STMS1H004321" CDS 4685783..4686427 /locus_tag="STM4444" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463305.1" /db_xref="GeneID:1255970" /translation="MEENKGFWYADWSFPIFVGLLSSGVFAGTHMYYLYGIGAFNEVA FVAMLKAGMDTGVYGAVAAFGASFLFARIIEGSLVGILDIGGAIQTGVGLGVPALLLG AGFVFPVANFIASLITGLVIGLAIGYIIILARKFTINQSDSTYGADVMMGAGNTSGRF LGPLIILSAMTASIPIGLGSLVGALLFYIWQKPITGGAILGAMILGSIFPVAIS" misc_feature 4685789..4686412 /locus_tag="STM4444" /note="Domain of unknown function (DUF4310); Region: DUF4310; pfam14187" /db_xref="CDD:404960" gene 4686479..4687619 /locus_tag="STM4445" /db_xref="GeneID:1255971" regulatory 4686479..4686484 /regulatory_class="ribosome_binding_site" /locus_tag="STM4445" /note="putative RBS for STM4445; RegulonDB:STMS1H004322" CDS 4686486..4687619 /locus_tag="STM4445" /codon_start=1 /transl_table=11 /product="putative dihydroorotase" /protein_id="NP_463306.1" /db_xref="GeneID:1255971" /translation="MFDLLLRHARLVDDTLTNIALQDGKIAALGDVDGPALKTIDLRG ECFVSAGWIDSHVHCYPTSPIYHDEPDSVGIATGVTTVVDAGSTGADDIDDFYTLTRD ATTDVYALLNVSRVGLIAQNELANMANIDADAVRQAVKRHPDFIVGLKARMSSSVVGV NGITPLERAKAMQQENGNLPLMVHIGNNPPDLDEIAERLTAGDIITHCYNGKPNRILR PDGELRASVTRALARGVRLDVGHGTASLSFAVAKRAISLGILPHTISSDIYCRNRING PVHSLANVMSKFLAIGMSLPQVIACVTANAADSLNLKTKGRLQPGLDADLTLFTLKRQ PTVLVDAENDSLQAEELLTPLAAIRAGKGYMTEQGSAEHAFDF" misc_feature 4686489..4687580 /locus_tag="STM4445" /note="probable amidohydrolase EF_0837/AHA_3915; Region: EF_0837; TIGR03583" /db_xref="CDD:132622" misc_feature order(4686651..4686653,4686657..4686659,4687035..4687037, 4687104..4687106,4687284..4687286) /locus_tag="STM4445" /note="active site" /db_xref="CDD:238632" gene 4687597..4688721 /locus_tag="STM4446" /db_xref="GeneID:1255972" regulatory 4687597..4687602 /regulatory_class="ribosome_binding_site" /locus_tag="STM4446" /note="putative RBS for STM4446; RegulonDB:STMS1H004323" CDS 4687603..4688721 /locus_tag="STM4446" /note="[L-seryl-tRNA(Ser) selenium transferase]" /codon_start=1 /transl_table=11 /product="putative selenocysteine synthase" /protein_id="NP_463307.1" /db_xref="GeneID:1255972" /translation="MPSIFEKYQLKQVINASGRMTALGVSTPRPEVIDAAMAGMNQYF EMKDLVNKTGEYIAKLLEVEGATVVSCASAGLAQSVAAVLVQDSDWLLENLHVTPIEN NEIVLPKGHNVNFGAPVGTMVALGGGKLVEAGYANECSAAQLAAAITPRTAAILYIKS HHCVQKSMLSVEQAAVVARTHNLPLIVDAAAEEDLQCYYRVGADLVIYSGAKAIEGPT SGLVIGKTQYVEWVKRQSAGIGRAMKVGKEGIVGLTCAIELYLRAQKESGAEMVEKMA PFIDTLNTFNGVSARVVWDSAGRDIARTEIKFDEAVTGIATGELVDALKQGEYAIYFR GYKANEGIIEADVRSVDRAQLAIVARRIGEVINQEKQA" misc_feature 4687612..4688700 /locus_tag="STM4446" /note="uncharacterized pyridoxal phosphate-dependent enzyme; Region: selA_rel; TIGR01437" /db_xref="CDD:273623" regulatory 4688710..4688715 /regulatory_class="ribosome_binding_site" /locus_tag="STM4446" /note="putative RBS for STM4447; RegulonDB:STMS1H004324" gene 4688718..4689458 /locus_tag="STM4447" /db_xref="GeneID:1255973" CDS 4688718..4689458 /locus_tag="STM4447" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_463308.2" /db_xref="GeneID:1255973" /translation="MKLTPNFYRDRVCLNVLAGSKDNAREIYAAAEGHVLVGVLSKNY PDVASAVADMREYAALIDNALSVGLGAGDPNQSAMVSEISRQVQPQHVNQVFTGVGTS RALLGQNETVVNGLVSPTGTPGLVKISTGPLSSRAPDGIVPIETAIALLKDMGGSSVK YFPMGGLTCRDEYKAVAEACARHDFWLEPTGGIDLENFAEILHIALDAGVSKIIPHIY SSIIDKVSGNTRADDVRQLLAIVRSRVG" misc_feature 4688739..4689419 /locus_tag="STM4447" /note="conserved hypothetical protein EF_0839/AHA_3917; Region: EF_0839; TIGR03581" /db_xref="CDD:188342" gene 4689467..4691388 /locus_tag="STM4448" /db_xref="GeneID:1255974" regulatory 4689467..4689472 /regulatory_class="ribosome_binding_site" /locus_tag="STM4448" /note="putative RBS for STM4448; RegulonDB:STMS1H004325" CDS 4689475..4691388 /locus_tag="STM4448" /codon_start=1 /transl_table=11 /product="putative phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type)" /protein_id="NP_463309.1" /db_xref="GeneID:1255974" /translation="MRFPNQRLAQLFAMLQNETLPQDELAQRLSVSTRTVRADIAALN MLLTPHGAQFTLSRGNGYQLKIDDPARYQSLQTQQSPALARGPRTSQERIHYLLARFL TSAFSLKLEDLADEWFVSRATLQNDMADVREHLLRYHLTLETRPRHGMKLFGGEMAIR ACLTDLLWTLAQQEPSHPLIVSTTLNTEVSQRLRSLLPDIFSHCQIRLTDEGELFLRL YCAVAVRRIREGYPLSECVAEEVDEKVRHAAHEIAELLQQLADKPLSEPEVSWLKVHI AARQVQEIAPSAINADDEEALVHYILNFINTQYNYNLLNDKQLHADLLTHIKTMITRV RYQIMIPNPLLENIKQHYPMAWDMTLAAISSWGKYTPYTISENEIGFLVLHIGVGLER SYNIGYQRQPQVLLVCDAGNAMVRMIEAVLARKYPQIEIALTLTLRDYEARDSIVEDF VISTARIGEKDKPVIMIAPFPTDYQLEQIGKLVLVDRTRPWMLDKYFDASHFRIVEGE IDQQTLFKTLCDQLHEEGFVDAAFLDSVIEREAIVSTLLGDGIALPHALGLLAKKTVV YTVLAPQGIAWGDETAHVIFLLAISKSEYEEAMAIYDIFVTFLRERAMTRLCACQNFT QFKTVAMECVSRF" misc_feature 4689514..4691301 /locus_tag="STM4448" /note="Transcriptional antiterminator [Transcription]; Region: BglG; COG3711" /db_xref="CDD:442925" gene 4691455..4691708 /locus_tag="STM4449" /db_xref="GeneID:1255975" regulatory 4691455..4691460 /regulatory_class="ribosome_binding_site" /locus_tag="STM4449" /note="putative RBS for STM4449; RegulonDB:STMS1H004326" CDS 4691466..4691708 /locus_tag="STM4449" /note="similar to E. coli negative regulator of translation (AAC74637.1); Blastp hit to AAC74637.1 (79 aa), 46% identity in aa 1 - 79" /codon_start=1 /transl_table=11 /product="putative copG family helix-turn-helix protein" /protein_id="NP_463310.1" /db_xref="GeneID:1255975" /translation="MATLNVRLDDKLKNEAYAVLEKLNITPTEAVRLLFQYVAETGRM PVKTVTLSDSEDALIQTVRERLSSPQKGIKVSLDDL" misc_feature 4691466..4691705 /locus_tag="STM4449" /note="type II toxin-antitoxin system RelB/DinJ family antitoxin; Region: PRK11235" /db_xref="CDD:183047" gene 4691685..4691982 /locus_tag="STM4450" /db_xref="GeneID:1255976" regulatory 4691685..4691690 /regulatory_class="ribosome_binding_site" /locus_tag="STM4449" /note="putative RBS for STM4450; RegulonDB:STMS1H004327" CDS 4691698..4691982 /locus_tag="STM4450" /note="similar to E. coli orf, hypothetical protein (AAC74636.1); Blastp hit to AAC74636.1 (95 aa), 67% identity in aa 1 - 94" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463311.1" /db_xref="GeneID:1255976" /translation="MTYELEFDPRALKEWHKLGDTVKAQLKKKLADVLLNPRIDSARL NGLPDCYKIKLKSSGYRLVYQVRDDVVIVFVVAVGKREHSAVYHDANKRL" misc_feature 4691701..>4691892 /locus_tag="STM4450" /note="mRNA-degrading endonuclease RelE, toxin component of the RelBE toxin-antitoxin system [Defense mechanisms]; Region: RelE; COG2026" /db_xref="CDD:441629" gene complement(4691986..4692463) /gene="nrdG" /locus_tag="STM4451" /db_xref="GeneID:1255977" CDS complement(4691986..4692450) /gene="nrdG" /locus_tag="STM4451" /EC_number="1.97.1.-" /note="similar to E. coli anaerobic ribonucleotide reductase activating protein (AAC77194.1); Blastp hit to AAC77194.1 (154 aa), 94% identity in aa 1 - 154" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleotide reductase activating protein" /protein_id="NP_463312.1" /db_xref="GeneID:1255977" /translation="MRYHQYYPVDIVNGPGTRCTLFVSGCVHECPGCYNKSTWRLNSG QPFTKEMEDKIIADLNDTRIHRQGISLSGGDPLHPQNVPDILALVQRIHAECPGKDIW VWTGYKLDELNAAQMQVVDLINVLVDGKFVQDLKDPALIWRGSSNQVVHHLR" misc_feature complement(4691989..4692450) /gene="nrdG" /locus_tag="STM4451" /note="anaerobic ribonucleoside-triphosphate reductase-activating protein; Region: nrdG; PRK11121" /db_xref="CDD:236853" misc_feature complement(order(4692073..4692075,4692136..4692144, 4692226..4692231,4692235..4692237,4692349..4692357, 4692361..4692363,4692367..4692369,4692373..4692375)) /gene="nrdG" /locus_tag="STM4451" /note="FeS/SAM binding site [active]" /db_xref="CDD:100105" regulatory complement(4692458..4692463) /regulatory_class="ribosome_binding_site" /gene="nrdG" /locus_tag="STM4451" /note="putative RBS for nrdG; RegulonDB:STMS1H004328" gene complement(4692571..4694720) /gene="nrdD" /locus_tag="STM4452" /db_xref="GeneID:1255978" CDS complement(4692571..4694709) /gene="nrdD" /locus_tag="STM4452" /EC_number="1.17.4.2" /note="similar to E. coli anaerobic ribonucleoside-triphosphate reductase (AAC77195.1); Blastp hit to AAC77195.1 (712 aa), 96% identity in aa 1 - 712" /codon_start=1 /transl_table=11 /product="anaerobic ribonucleoside-triphosphate reductase" /protein_id="NP_463313.1" /db_xref="GeneID:1255978" /translation="MTPHVMKRDGCKVPFKSERIKEAILRAAKAAGVDDADYCATVAE VVSSQMNARSQVDINEIQTAVENQLMSGPYKQLARAYIEYRHDRDIQREKRGRLNQEI RGLVEQTNSALLNENANKDSKVIPTQRDLLAGIVAKHYARQHLLPRDVVQAHERGDIH YHDLDYSPFFPMFNCMLIDLKGMLTQGFKMGNAEIEPPKSISTATAVTAQIIAQVASH IYGGTTINRIDEVLAPFVTESYNKHRKTADEWQIPDAEGYARSRTEKECYDAFQSLEY EVNTLHTANGQTPFVTFGFGLGTSWESRLIQASILRNRIAGLGKNRKTAVFPKLVFAI RDGLNHKFGDPNYDIKQLALECASKRMYPDILNYDQVVKVTGSFKTPMGCRSFLGVWE NENGEQIHDGRNNLGVISLNLPRIALEAKGDETAFWKLLDERLALARKALMTRIARLE GVKARVAPILYMEGACGVRLKADDDVSEIFKNGRASISLGYIGIHETINALFGGEHLY DSEQLRAKGIAIVERLRQAVDQWKDETGYGFSLYSTPSENLCDRFCRLDTAEFGVVPG VTDKGYYTNSFHLDVEKKVNPYDKIDFEAPYPPLANGGFICYGEYPNIQHNLKALEDV WDYSYQHVPYYGTNTPIDECYECGFTGEFECTSKGFTCPKCGNHDAARVSVTRRVCGY LGSPDARPFNAGKQEEVKRRVKHLGNGQIG" misc_feature complement(4692577..4694709) /gene="nrdD" /locus_tag="STM4452" /note="anaerobic ribonucleoside triphosphate reductase; Provisional; Region: PRK09263" /db_xref="CDD:236436" misc_feature complement(order(4693054..4693056,4693063..4693074, 4693984..4693986,4694080..4694082,4694089..4694094, 4694101..4694103,4694113..4694127,4694221..4694226, 4694230..4694232)) /gene="nrdD" /locus_tag="STM4452" /note="effector binding site [active]" /db_xref="CDD:153084" misc_feature complement(order(4693069..4693071,4693078..4693080, 4693489..4693491,4693558..4693563,4693840..4693842, 4694044..4694046,4694185..4694187)) /gene="nrdD" /locus_tag="STM4452" /note="active site" /db_xref="CDD:153084" misc_feature complement(order(4692715..4692717,4692724..4692726, 4692769..4692771,4692778..4692780)) /gene="nrdD" /locus_tag="STM4452" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:153084" misc_feature complement(4692664..4692678) /gene="nrdD" /locus_tag="STM4452" /note="glycine loop [active]" /db_xref="CDD:153084" regulatory complement(4694715..4694720) /regulatory_class="ribosome_binding_site" /gene="nrdD" /locus_tag="STM4452" /note="putative RBS for nrdD; RegulonDB:STMS1H004329" gene complement(4695118..4696782) /gene="treC" /locus_tag="STM4453" /db_xref="GeneID:1255979" CDS complement(4695118..4696770) /gene="treC" /locus_tag="STM4453" /EC_number="3.2.1.93" /note="alternative inducer of maltose system; cytoplasmic; similar to E. coli trehalase 6-P hydrolase (AAC77196.1); Blastp hit to AAC77196.1 (551 aa), 84% identity in aa 1 - 551" /codon_start=1 /transl_table=11 /product="trehalose- 6-P hydrolase" /protein_id="NP_463314.1" /db_xref="GeneID:1255979" /translation="MTIPLWWQNGVIYQIYPKSFQDTTGSGTGDLRGVTQRLDYLQRL GVDAIWLTPFYISPQVDNGYDVANYTAIDPTYGTLDDFDELVAQAKARGIRIILDMVF NHTSTQHAWFREALNKESPYRQFYIWRDGTPDVCPNNWQSKFGGSAWRWHSQSEQYYL HLFAPEQADLNWENPAVRAELKKVCEFWADRGVDGLRLDVVNLIAKDQNFPDDPTGDG RRFYTDGPRAHTFLREMNRDVFTPRNLMTVGEMSSTTLENCQQYAALSGDELSMTFNF HHLKVDYPNGEKWTLAKPDYVALKALFRHWQQGMHNVAWNALFWCNHDQPRIVSRFGD EGEYRVPAAKMLAMALHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESHNMFAALRA AGRDPDELLAILASKSRDNSRTPMQWDNGKNAGFTQGEPWISLCDNYTEVNVEAALRD ENSVFYTYQKLIALRKTQPVLIWGDYQDLLPDSPSVWCYRRQWQGQILLVVANLSNQC QEWHPPHIKGQWQALLHNYGEVASQPAAMTLRPFEAIWWLQR" misc_feature complement(4695121..4696770) /gene="treC" /locus_tag="STM4453" /note="trehalose-6-phosphate hydrolase; Provisional; Region: PRK10933" /db_xref="CDD:182849" regulatory complement(4696777..4696782) /regulatory_class="ribosome_binding_site" /gene="treC" /locus_tag="STM4453" /note="putative RBS for treC; RegulonDB:STMS1H004330" gene complement(4696820..4698237) /gene="treB" /locus_tag="STM4454" /note="pseudogene; frameshift" /pseudo /db_xref="GeneID:1255980" regulatory complement(4698349..4698357) /regulatory_class="minus_10_signal" /note="putative -10_signal for treB; RegulonDB:STMLTH004675" regulatory complement(4698368..4698376) /regulatory_class="minus_35_signal" /note="putative -35_signal for treB; RegulonDB:STMLTH004675" gene complement(4698375..4699397) /gene="treR" /locus_tag="STM4455" /db_xref="GeneID:1255981" CDS complement(4698375..4699322) /gene="treR" /locus_tag="STM4455" /note="GalR/LacI family; trehalose operon repressor. (SW:TRER_SALTY)" /codon_start=1 /transl_table=11 /product="transcriptional repressor of treABC" /protein_id="NP_463315.1" /db_xref="GeneID:1255981" /translation="MQNRLTIKDIARLSGVGKSTVSRVLNNESGVSERTRERVEAVMN QHGFSPSRSARAMRGQSDKVVAIIVTRLDSLSENLAVQTMLPAFYEQGYDPIMMESQF SPTLVMEHLGMLRRRNIDGVVLFGFTGITEELIAPWKASLVLLARDAQGFASVCYDDE GAIHILMQRLYEQGHRNISFLGVPHSDITTGKRRHDAYLAFCKKHKLHPVAALPGLAM KQGYEHTASVIMPDTTALVCATDTLALGASKYLQEQRIETLQLASVGNTPLIKFLHPE IVTVDPGYAEAGRQAASQLIEQINGRCDPRRIVIPSTLA" misc_feature complement(4698381..4699313) /gene="treR" /locus_tag="STM4455" /note="trehalose operon repressor, proteobacterial; Region: trehalos_R_Ecol; TIGR02405" /db_xref="CDD:131458" regulatory complement(4699330..4699335) /regulatory_class="ribosome_binding_site" /gene="treR" /locus_tag="STM4455" /note="putative RBS for treR; RegulonDB:STMS1H004332" regulatory complement(4699373..4699381) /regulatory_class="minus_10_signal" /gene="treR" /locus_tag="STM4455" /note="putative -10_signal for treR; RegulonDB:STMLTH004676" regulatory complement(4699389..4699397) /regulatory_class="minus_35_signal" /gene="treR" /locus_tag="STM4455" /note="putative -35_signal for treR; RegulonDB:STMLTH004676" gene 4699691..4702414 /gene="mgtA" /locus_tag="STM4456" /db_xref="GeneID:1255982" regulatory 4699691..4699696 /regulatory_class="ribosome_binding_site" /gene="mgtA" /locus_tag="STM4456" /note="putative RBS for mgtA; RegulonDB:STMS1H004333" CDS 4699706..4702414 /gene="mgtA" /locus_tag="STM4456" /EC_number="3.6.1.-" /note="Mg2+ ATPase transporter; Mg(2+) transport ATPase, P-type 1. (SW:ATMA_SALTY)" /codon_start=1 /transl_table=11 /product="P-type ATPase" /protein_id="NP_463316.1" /db_xref="GeneID:1255982" /translation="MLKIITRQLFARLNRHLPYRLVHRDPLPGAQTAVNATIPPSLSE RCLKVAAMEQETLWRVFDTHPEGLNAAEVTRAREKHGENRLPAQKPSPWWVHLWVCYR NPFNILLTILGGISYATEDLFAAGVIALMVGISTLLNFVQEARSTKAADALKAMVSNT ATVLRVINENGENAWLELPIDQLVPGDIIKLAAGDMIPADLRIIQARDLFVAQASLTG ESLPVEKVAATREPRQNNPLECDTLCFMGTNVVSGTAQAVVMATGAGTWFGQLAGRVS EQDNEQNAFQKGISRVSMLLIRFMLVMAPVVLIINGYTKGDWWEAALFALSVAVGLTP EMLPMIVTSTLARGAVKLSKQKVIVKHLDAIQNFGAMDILCTDKTGTLTQDKIVLENH TDISGKPSEHVLHCAWLNSHYQTGLKNLLDTAVLEGVDETAARQLSGRWQKIDEIPFD FERRRMSVVVAEDSNVHQLVCKGALQEILNVCTQVRHNGDIVPLDDNMLRRVKRVTDT LNRQGLRVVAVATKYLPAREGDYQRIDESDLILEGYIAFLDPPKETTAPALKALKASG ITVKILTGDSELVAAKVCHEVGLDAGDVIIGSDIEGLSDDALAALAARTTLFARLTPM HKERIVTLLKREGHVVGFMGDGINDAPALRAADIGISVDGAVDIAREAADIILLEKSL MVLEEGVIEGRRTFSNMLKYIKMTASSNFGNVFSVLVASAFLPFLPMLPLHLLIQNLL YDVSQVAIPFDNVDEEQIQKPQRWNPADLGRFMVFFGPISSIFDILTFCLMWWVFHAN TPETQTLFQSGWFVVGLLSQTLIVHMIRTRRLPFIQSRAAWPLMAMTLLVMVVGVSLP FSPLASYLQLQALPLSYFPWLIAILVGYMTLTQLVKGFYSRRYGWQ" misc_feature 4699706..4702411 /gene="mgtA" /locus_tag="STM4456" /note="magnesium-transporting P-type ATPase MgtA; Region: PRK10517" /db_xref="CDD:236705" misc_feature order(4700834..4700842,4701050..4701052,4701119..4701127, 4701254..4701256,4701422..4701430,4701563..4701565, 4701572..4701574,4701581..4701583,4701638..4701640, 4701647..4701649) /gene="mgtA" /locus_tag="STM4456" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:319772" misc_feature order(4701818..4701820,4701830..4701835,4701839..4701844, 4701917..4701919,4701926..4701931) /gene="mgtA" /locus_tag="STM4456" /note="putative cation binding site [ion binding]; other site" /db_xref="CDD:319772" gene complement(4702530..4702982) /locus_tag="STM4457" /db_xref="GeneID:1255983" CDS complement(4702530..4702976) /locus_tag="STM4457" /note="unknown (gi|4558865)" /codon_start=1 /transl_table=11 /product="putative transposase" /protein_id="NP_463317.1" /db_xref="GeneID:1255983" /translation="MVRSRFTEEQIADFLQQSKNGVPNKALCEEYGFSNSTLRRWQEK HAESIRQELKQIESTAKIVFLCFIVAAILLTLMFPKPTAALAIPPYLVYCISYIRRFR RISAKHIRRWDISSSRSGSGAENVFYKLSWTFLFFMPAYSILQLLE" misc_feature complement(4702800..4702970) /locus_tag="STM4457" /note="Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to...; Region: HTH_ARSR; cl46857" /db_xref="CDD:481197" regulatory complement(4702977..4702982) /regulatory_class="ribosome_binding_site" /locus_tag="STM4457" /note="putative RBS for STM4457; RegulonDB:STMS1H004334" gene complement(4703051..4703448) /gene="yjgF" /locus_tag="STM4458" /db_xref="GeneID:1255984" CDS complement(4703051..4703437) /gene="yjgF" /locus_tag="STM4458" /note="similar to E. coli orf, hypothetical protein (AAC77200.1); Blastp hit to AAC77200.1 (141 aa), 93% identity in aa 14 - 141" /codon_start=1 /transl_table=11 /product="putative translation initiation inhibitor" /protein_id="NP_463318.1" /db_xref="GeneID:1255984" /translation="MSKTIATENAPAAIGPYVQGVDLGSMVITSGQIPVDPKTGAVAE DVSAQARQSLENVKAIVEAAGLKVGDIVKTTVFVKDLNDFATVNATYEAFFTEHNATF PARSCVEVARLPKDVKIEIEAIAVRR" misc_feature complement(4703057..4703437) /gene="yjgF" /locus_tag="STM4458" /note="YjgF, YER057c, and UK114 belong to a large family of proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no...; Region: YjgF_YER057c_UK114_family; cl10015" /db_xref="CDD:447879" misc_feature complement(order(4703066..4703068,4703072..4703074, 4703078..4703080,4703108..4703131,4703165..4703167, 4703174..4703176,4703207..4703209,4703213..4703215, 4703219..4703224,4703228..4703230,4703345..4703350, 4703354..4703356,4703360..4703362,4703369..4703371, 4703375..4703377,4703384..4703389)) /gene="yjgF" /locus_tag="STM4458" /note="homotrimer interaction site [polypeptide binding]; other site" /db_xref="CDD:100004" misc_feature complement(order(4703078..4703080,4703123..4703125, 4703174..4703176,4703186..4703188,4703387..4703389)) /gene="yjgF" /locus_tag="STM4458" /note="putative active site [active]" /db_xref="CDD:100004" regulatory complement(4703443..4703448) /regulatory_class="ribosome_binding_site" /gene="yjgF" /locus_tag="STM4458" /note="putative RBS for yjgF; RegulonDB:STMS1H004335" gene complement(4703514..4703989) /gene="pyrI" /locus_tag="STM4459" /db_xref="GeneID:1255985" CDS complement(4703514..4703975) /gene="pyrI" /locus_tag="STM4459" /EC_number="2.1.3.2" /note="allosteric regulation; aspartate carbamoyltransferase regulatory chain. (SW:PYRI_SALTY)" /codon_start=1 /transl_table=11 /product="aspartate carbamoyltransferase, regulatory subunit" /protein_id="NP_463319.1" /db_xref="GeneID:1255985" /translation="MTHDNKLQVEAIKCGTVIDHIPAQVGFKLLSLFKLTETDQRITI GLNLPSGEMGRKDLIKIENTFLTEEQVNQLALYAPQATVNRIDNYDVVGKSRPSLPER INNVLVCPNSNCISHAEPVSSSFAVKKRANDIALKCKYCEKEFSHYVVLAN" misc_feature complement(4703517..4703972) /gene="pyrI" /locus_tag="STM4459" /note="aspartate carbamoyltransferase regulatory subunit; Reviewed; Region: PRK00893" /db_xref="CDD:234859" regulatory complement(4703984..4703989) /regulatory_class="ribosome_binding_site" /gene="pyrI" /locus_tag="STM4459" /note="putative RBS for pyrI; RegulonDB:STMS1H004336" gene complement(4703988..4705119) /gene="pyrB" /locus_tag="STM4460" /db_xref="GeneID:1255986" CDS complement(4703988..4704923) /gene="pyrB" /locus_tag="STM4460" /EC_number="2.1.3.2" /note="aspartate carbamoyltransferase catalytic chain. (SW:PYRB_SALTY)" /codon_start=1 /transl_table=11 /product="aspartate carbamoyltransferase, catalytic subunit" /protein_id="NP_463320.1" /db_xref="GeneID:1255986" /translation="MANPLYQKHIISINDLSRDDLNLVLATAAKLKANPQPELLKHKV IASCFFEASTRTRLSFETSMHRLGASVVGFSDSANTSLGKKGETLADTISVISTYVDA IVMRHPQEGAARLATEFSGQVPVLNAGDGSNQHPTQTLLDLFTIQETQGRLDNLHIAM VGDLKYGRTVHSLTQALAKFSGNRFYFIAPDALAMPQYILDMLDEKGMAWSLHGSIEE VMADVDILYMTRVQKERLDPSEYANVKAQFVLRASDLNGARENMKVLHPLPRIDEITT DVDKTPHAWYFQQAGNGIFARQALLALVLNSELSL" misc_feature complement(4704006..4704902) /gene="pyrB" /locus_tag="STM4460" /note="aspartate carbamoyltransferase; Region: asp_carb_tr; TIGR00670" /db_xref="CDD:273209" regulatory complement(4704930..4704935) /regulatory_class="ribosome_binding_site" /gene="pyrB" /locus_tag="STM4460" /note="putative RBS for pyrB; RegulonDB:STMS1H004337" gene complement(4704959..4705068) /gene="pyrL" /locus_tag="STM4461" /db_xref="GeneID:1255987" CDS complement(4704959..4705060) /gene="pyrL" /locus_tag="STM4461" /note="pyrbi operon leader peptide (attenuator). (SW:LPPY_SALTY)" /codon_start=1 /transl_table=11 /product="pyrBI operon leader peptide" /protein_id="NP_463321.1" /db_xref="GeneID:1255987" /translation="MVQCVRHSVLPRLKKDAGLPFFFPLKTNTKPLN" misc_feature complement(<4704962..4705060) /gene="pyrL" /locus_tag="STM4461" /note="pyr operon leader peptide; Region: PRK10224" /db_xref="CDD:236664" gene 4705027..4705180 /gene="yjgG" /locus_tag="STM4462" /db_xref="GeneID:1255988" regulatory 4705027..4705032 /regulatory_class="ribosome_binding_site" /gene="yjgG" /locus_tag="STM4462" /note="putative RBS for yjgG; RegulonDB:STMS1H004339" CDS 4705040..4705180 /gene="yjgG" /locus_tag="STM4462" /note="similar to E. coli orf, hypothetical protein (AAC77204.1); Blastp hit to AAC77204.1 (110 aa), 56% identity in aa 1 - 41" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_453732.1" /db_xref="GeneID:1255988" /translation="MSYTLNHASSRQIVRDYTQLCFGIKRLMHDLLIANGSYEFKFIL SK" regulatory complement(4705063..4705068) /regulatory_class="ribosome_binding_site" /gene="pyrL" /locus_tag="STM4461" /note="putative RBS for pyrL; RegulonDB:STMS1H004338" regulatory complement(4705093..4705101) /regulatory_class="minus_10_signal" /gene="pyrB" /locus_tag="STM4460" /note="putative -10_signal for pyrB; RegulonDB:STMLTH004677" regulatory complement(4705111..4705119) /regulatory_class="minus_35_signal" /gene="pyrB" /locus_tag="STM4460" /note="putative -35_signal for pyrB; RegulonDB:STMLTH004677" gene complement(4705150..4705644) /locus_tag="STM4463" /db_xref="GeneID:1255989" CDS complement(4705150..4705638) /locus_tag="STM4463" /note="similar to E. coli repressor of arg regulon; cer-mediated site specific recombination (AAC76269.1); Blastp hit to AAC76269.1 (156 aa), 33% identity in aa 4 - 135" /codon_start=1 /transl_table=11 /product="putative arginine repressor" /protein_id="NP_463323.1" /db_xref="GeneID:1255989" /translation="MKEYDDYSAKEQQQLAVCQRLISEKSYLSQEEIRRDLQNEGFEG ISQSTVSRLLKLLGAIKIRNTKGQKIYSVNPQRRPSPDAGRSIAEMVVSVEHNSEFIL IHTAAGYGRAVARILDYHALPEILGVVAGSSIVWVAPRVVQRTALVHKQINYLLKMNL NS" misc_feature complement(4705162..4705611) /locus_tag="STM4463" /note="Arginine repressor [Transcription]; Region: ArgR; COG1438" /db_xref="CDD:441047" regulatory complement(4705639..4705644) /regulatory_class="ribosome_binding_site" /locus_tag="STM4463" /note="putative RBS for STM4463; RegulonDB:STMS1H004340" gene complement(4705825..4707236) /locus_tag="STM4464" /db_xref="GeneID:1255990" CDS complement(4705825..4707228) /locus_tag="STM4464" /note="similar to E. coli putative S-transferase (AAC75358.1); Blastp hit to AAC75358.1 (513 aa), 31% identity in aa 103 - 509, 30% identity in aa 19 - 48" /codon_start=1 /transl_table=11 /product="putative arginine repressor" /protein_id="NP_463324.1" /db_xref="GeneID:1255990" /translation="MGKFKFPTAYTILFILIALVAVMTWIVPAGKYQMAMNATLGKEV PVAGTYAPVDAHPQGITAVLLAPIDGLYNHETYTAGAIDVALFVLIIGGFLGVVNKTG AIDAGIERVTIKLNGKDEWMIPILMALFAAGGTIYGMAEESLPFYTLLVPVMMAARFD PLVAAATVLLGAGIGTLGSTINPFATVIAANAAGIPFTQGMLMRVLLLIVGYVLCVFW VMRYARKVRAHPELSIVADKMEENRAHFLGNRANTLLEFTATRKWVLMIFAASFAVMI YGVAVLGWWMAEISGVFLAAAIIVGVITRMGEEAFTSTFIDGARDLLGVALIIGIARG IVVVMDNGMITHTILHSAESLVSGLSTTIFINVTYWLEVLLSFLVPSSSGLAVLTMPI MAPLADFAHVQRDLVVTAYQSASGIVNLVTPTSAVVMGGLAIARVPYVRYLKWVAPLL LILTLLNMAVLSIGAMM" misc_feature complement(4705828..4707222) /locus_tag="STM4464" /note="Predicted membrane transporter YfcC, affects glyoxylate shunt [General function prediction only]; Region: YfcC; COG1288" /db_xref="CDD:440899" regulatory complement(4707231..4707236) /regulatory_class="ribosome_binding_site" /locus_tag="STM4464" /note="putative RBS for STM4464; RegulonDB:STMS1H004341" gene complement(4707284..4708294) /locus_tag="STM4465" /db_xref="GeneID:1255991" CDS complement(4707284..4708288) /locus_tag="STM4465" /EC_number="2.1.3.3" /note="similar to E. coli ornithine carbamoyltransferase 1 (AAC77211.1); Blastp hit to AAC77211.1 (334 aa), 68% identity in aa 6 - 332" /codon_start=1 /transl_table=11 /product="putative ornithine carbamoyltransferase" /protein_id="NP_463325.1" /db_xref="GeneID:1255991" /translation="MVISLKNRNFLKLLDYTPAEIQHLIDLAIELKAAKKAGCEKQTL IGKNIALIFEKTSTRTRCAFEVAAFDQGAQVTYLGPSGSQIGHKESMKDTARVLGRMY DGIEYRGFGQHIVEELGEYAGVPVWNGLTDEFHPTQILADLMTMLEHAPGKTLPELSF AYLGDARNNMGNSLMVGAAKMGMDIRLIAPKSFWPDAALVAQCREIASVTGARITLTE SVEDGVHGVDFLYTDVWVSMGEPKEAWAERVSLMTPYQVNQQVVNATGNPDVKFMHCL PAFHNEHTKVGREIEMAYGLKGLEVTEEVFESAGSIVFDEAENRMHTIKAVMVATLGD " misc_feature complement(4707287..4708288) /locus_tag="STM4465" /note="ornithine carbamoyltransferase; Validated; Region: PRK02102" /db_xref="CDD:179366" regulatory complement(4708289..4708294) /regulatory_class="ribosome_binding_site" /locus_tag="STM4465" /note="putative RBS for STM4465; RegulonDB:STMS1H004342" gene complement(4708400..4709339) /locus_tag="STM4466" /db_xref="GeneID:1255992" CDS complement(4708400..4709332) /locus_tag="STM4466" /EC_number="2.7.2.2" /note="similar to E. coli putative carbamate kinase (AAC73623.1); Blastp hit to AAC73623.1 (297 aa), 56% identity in aa 2 - 295" /codon_start=1 /transl_table=11 /product="putative carbamate kinase" /protein_id="NP_463326.1" /db_xref="GeneID:1255992" /translation="MENKRTLVVALGGNALLKRGEPLEADIQRKNIELAARTIAQLTR QWRVVLVHGNGPQVGLLALQNSAYANVTPYPLDILGAESQGMIGYMLQQALKNHLPER EISVLLTQVEVDANDPAFLNPTKYIGPIYDEAQARALQAEKGWVFKADGNAFRRVVPS PQPKRIVENDAIRALISRDHLVICNGGGGVPVVEKADGYHGIEAVIDKDLSAALLASQ IHADALLILTDADAVYLDWGKPTQRPLAQVTPELLREMQFDAGSMGPKVTACAEFVSH CRGIAGIGSLADGQAILAGEKGTLIRCETADVDA" misc_feature complement(4708403..4709317) /locus_tag="STM4466" /note="carbamate kinase; Reviewed; Region: PRK12354" /db_xref="CDD:183466" misc_feature complement(order(4708706..4708714,4708958..4708960, 4709168..4709176,4709294..4709299,4709303..4709305)) /locus_tag="STM4466" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:239768" misc_feature complement(order(4708535..4708537,4708544..4708549, 4708559..4708561,4708622..4708624,4708631..4708633, 4708646..4708651,4709294..4709296)) /locus_tag="STM4466" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:239768" misc_feature complement(order(4708535..4708537,4708544..4708549, 4708559..4708561,4708622..4708624,4708631..4708633, 4708646..4708651,4709294..4709296)) /locus_tag="STM4466" /note="nucleotide binding site [chemical binding]; other site" /db_xref="CDD:239768" misc_feature complement(order(4708730..4708732,4708736..4708738, 4708820..4708822,4708829..4708831,4709003..4709005, 4709009..4709014,4709042..4709044,4709054..4709059, 4709066..4709068,4709075..4709080,4709090..4709092, 4709099..4709104,4709111..4709113,4709144..4709146)) /locus_tag="STM4466" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:239768" regulatory complement(4709334..4709339) /regulatory_class="ribosome_binding_site" /locus_tag="STM4466" /note="putative RBS for STM4466; RegulonDB:STMS1H004343" gene complement(4709343..4710569) /locus_tag="STM4467" /db_xref="GeneID:1255993" CDS complement(4709343..4710563) /locus_tag="STM4467" /EC_number="3.5.3.6" /codon_start=1 /transl_table=11 /product="putative arginine deiminase" /protein_id="NP_463327.1" /db_xref="GeneID:1255993" /translation="MEKHFVGSEIGQLRSVMLHRPNLSLKRLTPSNCQELLFDDVLSV ERAGEEHDIFANTLRQQGIEVLLLTDLLTQTLDVADAKAWLLDTQISDYRLGPTFAAD IRAWLADMPHRELARHLSGGLTYGEIPASIKNMVVDTHDINDFIMKPLPNHLFTRDTS CWIYNGVSINPMAKPARQRETNNLRAIYRWHPQFAGGDFIKYFGDEDINYDHATLEGG DVLVIGRGAVLIGMSERTTPQGVEFLAQALFKHRQAERVIAVELPKHRSCMHLDTVMT HIDIDTFSVYPEVVRPDVQCWTLTPDGRGGLKRTQESTLVHALETALGIDQVRLITTG GDAFEAEREQWNDANNVLTLRPGVVVGYERNIWTNEKYDKAGITVLPIPGDELGRGRG GARCMSCPLERDGI" misc_feature complement(4709346..4710563) /locus_tag="STM4467" /note="arginine deiminase; Provisional; Region: PRK01388" /db_xref="CDD:234949" regulatory complement(4710564..4710569) /regulatory_class="ribosome_binding_site" /locus_tag="STM4467" /note="putative RBS for STM4467; RegulonDB:STMS1H004344" gene 4711228..4711691 /gene="yjgK" /locus_tag="STM4468" /db_xref="GeneID:1255994" regulatory 4711228..4711233 /regulatory_class="ribosome_binding_site" /gene="yjgK" /locus_tag="STM4468" /note="putative RBS for yjgK; RegulonDB:STMS1H004345" CDS 4711239..4711691 /gene="yjgK" /locus_tag="STM4468" /note="similar to E. coli orf, hypothetical protein (AAC77209.1); Blastp hit to AAC77209.1 (153 aa), 80% identity in aa 4 - 153" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463328.1" /db_xref="GeneID:1255994" /translation="MIIGNIEHLEVWLPTALRQAIEHVNAHVTTTTAPGKYDIDGDRL FYMISENMTEPGESRSAEYHARYLDIQIVLQGQEGMAFSTRPAGTPHTDWLADKDIAF LPTSVDEKTVVLNEGDFVVFYPGEVHKPLCAVGEPARVRKAVVKMLMA" misc_feature 4711239..4711652 /gene="yjgK" /locus_tag="STM4468" /note="beta-galactosidase subunit beta; Region: ebgC; cl01047" /db_xref="CDD:470044" gene complement(4711765..4712843) /gene="argI" /locus_tag="STM4469" /db_xref="GeneID:1255995" CDS complement(4711765..4712769) /gene="argI" /locus_tag="STM4469" /EC_number="2.1.3.3" /note="ornithine carbamoyltransferase chain I. (SW:OTC1_SALTY)" /codon_start=1 /transl_table=11 /product="ornithine carbamoyltransferase 1" /protein_id="NP_463329.1" /db_xref="GeneID:1255995" /translation="MSTFYQKPFLKLLDFTASELTALLQLAAKLKADKKNGKEEQKLV GKNIALIFEKDSTRTRCSFEVAAYDQGARVTYLGSSGSQIGHKESIKDTARVLGRMFD GIQYRGYGQEIVETLAEYSGVPVWNGLTDEYHPTQLLADLLTMQEHLPGKAFNEMTLV YAGDARNNMGNSMLEAAALTGLDLRLVAPKACWPQAALVAECSAMAKKNGGAITLTED IASGVKGADFIYTDVWVSMGEPKEKWAERIALLRDYQVNSQMMALTGNPQVKFLHCLP AFHDDETTLGKKMAEEYGLHGGMEVTDEVFESAASIVFDEAENRMHTIKAVMVATLSK " misc_feature complement(4711768..4712769) /gene="argI" /locus_tag="STM4469" /note="ornithine carbamoyltransferase subunit I; Provisional; Region: PRK03515" /db_xref="CDD:179587" regulatory complement(4712773..4712778) /regulatory_class="ribosome_binding_site" /gene="argI" /locus_tag="STM4469" /note="putative RBS for argI; RegulonDB:STMS1H004346" protein_bind complement(4712818..4712834) /gene="argI" /locus_tag="STM4469" /note="putative binding site for ArgR, RegulonDB: STMS1H000027" /bound_moiety="ArgR" regulatory complement(4712819..4712827) /regulatory_class="minus_10_signal" /gene="argI" /locus_tag="STM4469" /note="putative -10_signal for argI; RegulonDB:STMLTH004678" regulatory complement(4712835..4712843) /regulatory_class="minus_35_signal" /gene="argI" /locus_tag="STM4469" /note="putative -35_signal for argI; RegulonDB:STMLTH004678" gene 4712923..4713351 /gene="yjgD" /locus_tag="STM4470" /db_xref="GeneID:1255996" regulatory 4712923..4712928 /regulatory_class="ribosome_binding_site" /gene="yjgD" /locus_tag="STM4470" /note="putative RBS for yjgD; RegulonDB:STMS1H004347" CDS 4712935..4713351 /gene="yjgD" /locus_tag="STM4470" /note="hypothetical 15.7 dda protein in argI-miaE intergenic region (ORF15.6). (SW:YJGD_SALTY)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463330.1" /db_xref="GeneID:1255996" /translation="MANPELLEEQREETRLIIEELLEDGSDPDALYTIEHHLSADDFE TLEKAAVEAFKLGYEVTEPEELEVEEGDTVICCDILSECALNAELIDAQVEQLMNLAE KYDVEYDGWGTYFEDPNGEEGDDDDYVDEDDDGVRH" misc_feature 4712935..4713348 /gene="yjgD" /locus_tag="STM4470" /note="ribonuclease E inhibitor RraB; Region: PRK11191" /db_xref="CDD:236876" protein_bind complement(4712971..4712982) /note="putative binding site for ArgR, RegulonDB: STMS1H000025" /bound_moiety="ArgR" gene 4713363..4714175 /gene="miaE" /locus_tag="STM4471" /db_xref="GeneID:1255997" CDS 4713363..4714175 /gene="miaE" /locus_tag="STM4471" /note="tRNA-hydroxylase. (SW:MIAE_SALTY)" /codon_start=1 /transl_table=11 /product="hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA" /protein_id="NP_463331.1" /db_xref="GeneID:1255997" /translation="MTVRQRLLSYFFNRLRMNYPQILSPVLNFLHCPTPQAWIVQARD PQNLPLLLTDHLICELKAAQTALLLVRKYVADKSGADALLSWLQPYEAFAFRQGPEPD FVALHKQISKSAMPQTDDPWGRQLIDRMVLLIKEELHHFWQVREVMQARNIPYVKITA SRYAKGMLKAVRTHEPLTLIDKLICGAYIEARSCERFAALAPWLDEDLQTFYLSLLRS EARHYQDYLALAQQISAEDISARVRYFGEVEADLILSPDREFRFHSGVPAAG" misc_feature 4713423..4714154 /gene="miaE" /locus_tag="STM4471" /note="tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); Region: MiaE; pfam06175" /db_xref="CDD:114868" misc_feature order(4713537..4713539,4713771..4713773,4713780..4713782, 4713864..4713866,4713906..4713908,4713915..4713917, 4713930..4713932,4714017..4714019,4714026..4714028, 4714038..4714040) /gene="miaE" /locus_tag="STM4471" /note="active site" /db_xref="CDD:153119" misc_feature order(4713537..4713539,4713771..4713773,4713780..4713782, 4713930..4713932,4714017..4714019,4714026..4714028) /gene="miaE" /locus_tag="STM4471" /note="dinuclear metal binding site [ion binding]; other site" /db_xref="CDD:153119" misc_feature order(4713540..4713542,4713561..4713563,4713570..4713572, 4713744..4713746,4713753..4713758,4713765..4713767, 4713774..4713776,4713783..4713788) /gene="miaE" /locus_tag="STM4471" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:153119" gene complement(4714409..4714904) /gene="ytgA" /locus_tag="STM4472" /db_xref="GeneID:1255998" CDS complement(4714409..4714897) /gene="ytgA" /locus_tag="STM4472" /note="hypothetical 17.8 kKa protein in miaE 3'region (ORF 17.8). (SW:YTGA_SALTY)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463332.1" /db_xref="GeneID:1255998" /translation="MKRLLSAIVFPAMFISISNVYALDIQPGEWKMENIEMRTINPDT KEVLMDEKNSGIATLMCYTPKMSEDSKKMVKGFSTSAGGCTTTFVESTDTKLINETVC NNPDVKSHSIVETTKISDTEFAMTMKSDVDAGGNKTTSINKIKQTFVGKTCSEASKGV KQ" misc_feature complement(4714472..4714825) /gene="ytgA" /locus_tag="STM4472" /note="Protein of unknown function (DUF3617); Region: DUF3617; pfam12276" /db_xref="CDD:463516" regulatory complement(4714899..4714904) /regulatory_class="ribosome_binding_site" /gene="ytgA" /locus_tag="STM4472" /note="putative RBS for ytgA; RegulonDB:STMS1H004348" gene complement(4715004..4715507) /gene="yjgM" /locus_tag="STM4473" /db_xref="GeneID:1255999" CDS complement(4715004..4715507) /gene="yjgM" /locus_tag="STM4473" /note="hypothetical 18.3 Kda protein in miaE 3'region (ORF 18.3). (SW:YJGM_SALTY)" /codon_start=1 /transl_table=11 /product="putative acetyltransferase" /protein_id="NP_463333.1" /db_xref="GeneID:1255999" /translation="MNNVASPTLTVRRITTADNAAIARVIRQVSAEYGLTADKGYTVA DPNLDELYQVYSQPGAAYWVVEQNGCVVGGGGVAPLSCSEPDICELQKMYFLPVIRGQ GLAKKLALMALDHAREQGFKRCYLETTAFLREAIALYERLGFEHISEPLGCTGHVDCE VRMLKDL" misc_feature complement(4715007..4715483) /gene="yjgM" /locus_tag="STM4473" /note="N-acetylglutamate synthase or related acetyltransferase, GNAT family [Amino acid transport and metabolism]; Region: ArgA; COG1246" /db_xref="CDD:440859" gene 4715688..4716889 /gene="yjgN" /locus_tag="STM4474" /db_xref="GeneID:1256000" regulatory 4715688..4715693 /regulatory_class="ribosome_binding_site" /gene="yjgN" /locus_tag="STM4474" /note="putative RBS for yjgN; RegulonDB:STMS1H004349" CDS 4715702..4716889 /gene="yjgN" /locus_tag="STM4474" /note="hypothetical protein in miaE 3'region (ORF x). (SW:YJGN_SALTY)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463334.1" /db_xref="GeneID:1256000" /translation="MNNVISSKDNHNHTLVFTGKGGKYFVICLVNFLLTCITLGIYAP WAMVKCRRYIYTNMTLNNQPFAYKATGGALFISVLLVFIIYIVSLSLIEHGHPGLGFT LFGLLIAIIPFMAVKGLQYQAMMTSLNGVHFGFQCSMRRAWWYMFALPVLLMVALYIV LYIISLVTIAVGGLVFSIVFLGLLAIIGIGVINGITYSKWMTLFGNGANFGIHRFSIQ VNVKTCIRGCVLAMLTLFPFAVVIGYLIAPVFTDMILLSMMGNAQAGGALILQYYGQI MACYFLYFLAIIVVTSYLYVALRNLFLNNLSLANDSIRFHSSVTAHGMLWRLLVVFVI SGVTLGLAYPWLKIWLVSWLAQNTQVQGDLDSLELTNDEKPLENSPLMWISRGIMPYF PFI" misc_feature 4715705..4716883 /gene="yjgN" /locus_tag="STM4474" /note="Uncharacterized membrane protein YjgN, DUF898 family [Function unknown]; Region: YjgN; COG4269" /db_xref="CDD:443410" gene complement(4717031..4719895) /gene="valS" /locus_tag="STM4475" /db_xref="GeneID:1256001" CDS complement(4717031..4719886) /gene="valS" /locus_tag="STM4475" /EC_number="6.1.1.9" /note="similar to E. coli valine tRNA synthetase (AAC77215.1); Blastp hit to AAC77215.1 (951 aa), 96% identity in aa 1 - 951" /codon_start=1 /transl_table=11 /product="valine tRNA synthetase" /protein_id="NP_463335.1" /db_xref="GeneID:1256001" /translation="MEKTYNPQDIEQPLYEHWEKQGYFKPNGDESKESFCIMIPPPNV TGSLHMGHAFQQTIMDTMIRYQRMQGKNTLWQVGTDHAGIATQMVVERKIAAEEGKTR HDYGRDAFIDKIWQWKAESGGTITRQMRRLGNSVDWERERFTMDEGLSNAVKEVFVRL YKEDLIYRGKRLVNWDPKLRTAISDLEVENRESKGSMWHIRYPLADGAKTADGKDYLV VATTRPETILGDTGVAVNPEDPRYQSLIGKFVILPLVNRRIPIVGDEHADMEKGTGCV KITPAHDFNDYEVGKRHALPMINILTFDGDIRESAEVFDTKGEESDVYSSEIPAEFQK LERFAARKAVVAAVDALGLLEEIKPHDLTVPYGDRGGVVIEPMLTDQWYVRADVLAKP AVEAVENGDIQFVPKQYENMYFSWMRDIQDWCISRQLWWGHRIPAWYDNDGNVYVGRT EDEVRQENNLGADVALRQDEDVLDTWFSSALWTFSTLGWPENTDALRQFHPTSVMVSG FDIIFFWIARMIMMTMHFIKDENGKPQVPFHTVYMTGLIRDDEGQKMSKSKGNVIDPL DMVDGISLPELLEKRTGNMMQPQMAEKIRKRTEKQFPNGIEPHGTDALRFTLAALAST GRDINWDMKRLEGYRNFCNKLWNASRFVLMNTEEQDCGFNGGEMTLSLADRWILAEFN QTVKAYRDALDSFRFDIAAGILYEFTWNQFCDWYLELTKPVMTGGSESELRGTRHTLV TVLEGLLRLAHPIIPFITETIWQRVKVICGITADTIMLQPFPEYNAAQVDEAALADTE WLKQAIVAVRNIRAEMNIAPGKPLELLLRGCSEEAVRRVNDNRSFLQTLARLESITVL PADDKGPVSVTKIIDGAELLIPMAGLINKDDELARLAKEVAKIEGEIARIEGKLSNEG FVARAPEAVIAKEREKLDGYAEAKAKLIEQQAVISAL" misc_feature complement(4717040..4719886) /gene="valS" /locus_tag="STM4475" /note="Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; Region: ValS; COG0525" /db_xref="CDD:440291" gene complement(4719886..4720376) /gene="holC" /locus_tag="STM4476" /db_xref="GeneID:1256002" CDS complement(4719886..4720368) /gene="holC" /locus_tag="STM4476" /EC_number="2.7.7.7" /note="similar to E. coli DNA polymerase III, chi subunit (AAC77216.1); Blastp hit to AAC77216.1 (147 aa), 95% identity in aa 1 - 147" /codon_start=1 /transl_table=11 /product="DNA polymerase III, chi subunit" /protein_id="NP_463336.3" /db_xref="GeneID:1256002" /translation="MTTHLNPPQEAPYMKNATFYLLDNDTTVNGLSAVEQLVCEIAAE RWRAGKRVLIACEDEKQAIRLDEALWARPAESFVPHNLAGEGPRGGAPVEIAWPQKRN SSPRDILISLRTSFADFATAFTEVVDFVPYEETLKQLARERYKAYRVAGFNLNTATWK " misc_feature complement(4719889..4720329) /gene="holC" /locus_tag="STM4476" /note="DNA polymerase III subunit chi; Validated; Region: PRK05728" /db_xref="CDD:235581" regulatory complement(4719890..4719895) /regulatory_class="ribosome_binding_site" /gene="holC" /locus_tag="STM4476" /note="putative RBS for valS; RegulonDB:STMS1H004350" regulatory complement(4720371..4720376) /regulatory_class="ribosome_binding_site" /gene="holC" /locus_tag="STM4476" /note="putative RBS for holC; RegulonDB:STMS1H004351" gene complement(4720466..4721991) /gene="pepA" /locus_tag="STM4477" /db_xref="GeneID:1256003" CDS complement(4720466..4721977) /gene="pepA" /locus_tag="STM4477" /EC_number="3.4.11.1" /note="similar to E. coli aminopeptidase A/I (AAC77217.1); Blastp hit to AAC77217.1 (503 aa), 98% identity in aa 1 - 503" /codon_start=1 /transl_table=11 /product="aminopeptidase A" /protein_id="NP_463337.1" /db_xref="GeneID:1256003" /translation="MEFSVKSGSPEKQRSACIVVGVFEPRRLSPIAEQLDKISDGYIS ALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLND TGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETLYSFDQLKTNKSEPRRPLRKMVFN VPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSKNV ITRVIGEQQMRELGMNAYLAVGHGSQNESLMSVIEYKGNPSEDARPIVLVGKGLTFDS GGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRP GDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYVERFEPEAVIDVATLTGACVIALGHHI TGLMSNHNPLAHELIGASEQAGDRAWRLPLGDEFQEQLESNFADMANIGGRPGGAITA GCFLSRFTRKYNWAHLDIAGTAWRSGKAKGATGRPVALLSQFLLNRAGFNGEE" misc_feature complement(4720493..4721977) /gene="pepA" /locus_tag="STM4477" /note="multifunctional aminopeptidase A; Provisional; Region: PRK00913" /db_xref="CDD:234863" regulatory complement(4721986..4721991) /regulatory_class="ribosome_binding_site" /gene="pepA" /locus_tag="STM4477" /note="putative RBS for pepA; RegulonDB:STMS1H004352" gene complement(4722021..4722140) /locus_tag="STM4478" /db_xref="GeneID:1256004" CDS complement(4722021..4722140) /locus_tag="STM4478" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463338.1" /db_xref="GeneID:1256004" /translation="MDFELQAGGKTVKPRSLHQVSDRGEQAQPTHLQLERRRV" gene 4722372..4723472 /gene="yjgP" /locus_tag="STM4479" /db_xref="GeneID:1256005" CDS 4722372..4723472 /gene="yjgP" /locus_tag="STM4479" /note="similar to E. coli orf, hypothetical protein (AAC77218.1); Blastp hit to AAC77218.1 (366 aa), 94% identity in aa 1 - 366" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_463339.1" /db_xref="GeneID:1256005" /translation="MIIIRYLVRETLKSQLAILFILLLIFFCQKLVRILGAAVDGDIP ANLVLSLLGLGVPEMAQLILPLSLFLGLLMTLGKLYTESEITVMHACGLSKAVLVKAA MVLALFTGILAAVNVMWAGPWSSKHQDEVLAEAKANPGMAALAQGQFQQATNGNSVLF IESVDGSDFHDVFLAQIRPKGNARPSVVVADSGHLTQLRDGSQVVTLNKGTRFEGTAL LRDFRITDFQNYQAIIGHQAVALDPNDTDQMDMRTLWNTDNDRARAELHWRITLVFTV FMMALMVVPLSVVNPRQGRVLSMLPAMLLYLLFFLIQTSIKSNGGKGKLDPVIWMWAV NLIYLALAIGLNLWDTVPVRRLRARFLRKGAV" misc_feature 4722378..4723409 /gene="yjgP" /locus_tag="STM4479" /note="LPS export ABC transporter permease LptF; Region: LptF_YjgP; TIGR04407" /db_xref="CDD:275200" gene 4723459..4724554 /gene="yjgQ" /locus_tag="STM4480" /db_xref="GeneID:1256006" regulatory 4723459..4723464 /regulatory_class="ribosome_binding_site" /gene="yjgQ" /locus_tag="STM4480" /note="putative RBS for yjgQ; RegulonDB:STMS1H004353" CDS 4723472..4724554 /gene="yjgQ" /locus_tag="STM4480" /note="similar to E. coli orf, hypothetical protein (AAC77219.1); Blastp hit to AAC77219.1 (361 aa), 97% identity in aa 2 - 361" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_463340.1" /db_xref="GeneID:1256006" /translation="MQPFGVLDRYIGKTIFTTIMMTLFMLVSLSGIIKFVDQLKKAGQ GNYDALGAGMYTLLSVPKDIQIFFPMAALLGALLGLGMLAQRSELVVMQASGFTRMQV ALSVMKTAIPLVLLTMAIGEWVAPQGEQMARNYRAQAMYGGSLLSTQQGLWAKDGNNF VYIERVKGDEELAGISIYAFNDQRRLQSVRYAASAKFDPEHKVWRLSQVDESDLQNPK QITGSQTVSGTWKTNLTPDKLGVVALDPDALSISGLHNYVKYLKSSGQDAGRYQLNMW SKIFQPLSVAVMMLMALSFIFGPLRSVPMGVRVVTGISFGFVFYVLDQIFGPLTLVYG IPPIVGALLPSASFFLISLWLMLRKS" misc_feature 4723490..4724548 /gene="yjgQ" /locus_tag="STM4480" /note="LPS export ABC transporter permease LptG; Region: LptG_lptG; TIGR04408" /db_xref="CDD:275201" gene complement(4724749..4725758) /gene="idnR" /locus_tag="STM4481" /db_xref="GeneID:1256007" CDS complement(4724749..4725747) /gene="idnR" /locus_tag="STM4481" /note="GalR/LacI family; similar to E. coli L-idonate transcriptional regulator (AAC77221.1); Blastp hit to AAC77221.1 (332 aa), 89% identity in aa 1 - 332" /codon_start=1 /transl_table=11 /product="L-idonate regulator" /protein_id="NP_463341.1" /db_xref="GeneID:1256007" /translation="MRNHRISLQDIATLAGVTKMTVSRYIRSPKKVARETGERIAQIM EEINYIPNRAPAMLLNAQSYTLGVLIPSFQNQLFADILAGIESVTSGHNYQTLIANYN YNRDSEEESVINLLSYNIDGIILSEKYHTLRTVKFLRSATLPIVELMDIQGDRLDMEV GFDNRQAAFDMVSTMLDKRQRRKILYLGSKDDIRDEQRYHGYCDAMTRRGLAPLRINP RAISSIHLGIQLMRDALTAHPDVDGVFCTNDDIAMGALLWCRERQLAVPEQISIAGFH GLEMGRQMIPSLASVITPRFEIGRRAAQMLLNKIKNNDLNHNTIDLGYQIYHGSTL" misc_feature complement(4725523..4725732) /gene="idnR" /locus_tag="STM4481" /note="helix_turn _helix lactose operon repressor; Region: HTH_LACI; smart00354" /db_xref="CDD:197675" misc_feature complement(order(4725574..4725576,4725580..4725585, 4725592..4725594,4725601..4725603,4725640..4725642, 4725649..4725654,4725667..4725669,4725676..4725681, 4725685..4725699,4725721..4725723)) /gene="idnR" /locus_tag="STM4481" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:143331" misc_feature complement(4725574..4725603) /gene="idnR" /locus_tag="STM4481" /note="domain linker motif [active]" /db_xref="CDD:143331" misc_feature complement(4724755..4725555) /gene="idnR" /locus_tag="STM4481" /note="ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators; Region: PBP1_GntR; cd01575" /db_xref="CDD:380489" misc_feature complement(order(4724977..4724979,4725064..4725066, 4725073..4725075,4725079..4725081,4725394..4725399, 4725403..4725408,4725415..4725417,4725454..4725465, 4725490..4725492,4725502..4725504,4725511..4725513, 4725529..4725531)) /gene="idnR" /locus_tag="STM4481" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:380489" misc_feature complement(order(4724869..4724871,4724920..4724922, 4725082..4725084,4725154..4725156,4725262..4725264, 4725301..4725303,4725370..4725372,4725505..4725507, 4725514..4725519)) /gene="idnR" /locus_tag="STM4481" /note="putative ligand binding site [chemical binding]; other site" /db_xref="CDD:380489" regulatory complement(4725753..4725758) /regulatory_class="ribosome_binding_site" /gene="idnR" /locus_tag="STM4481" /note="putative RBS for idnR; RegulonDB:STMS1H004354" gene complement(4725811..4727137) /gene="idnT" /locus_tag="STM4482" /db_xref="GeneID:1256008" CDS complement(4725811..4727130) /gene="idnT" /locus_tag="STM4482" /note="similar to E. coli L-idonate transporter (AAC77222.1); Blastp hit to AAC77222.1 (439 aa), 94% identity in aa 1 - 439" /codon_start=1 /transl_table=11 /product="GntP family L-idonate transport protein" /protein_id="NP_463342.1" /db_xref="GeneID:1256008" /translation="MPLIIIAAGVALLLVLMIGFKVNGFIALVLVAAVVGFAEGMGAQ DVLHSIQNGIGGTLGGLAMILGFGAMLGRLISDTGAAQRIATTLINTFGKKRVQWALV ITGLIVGLAMFFEVGFVLLLPLVFTIVASSGLPLLYVGVPMVAALSVTHCFLPPHPGP TAIATIFEANLGTTLLYGLIITIPTVIVAGPLFSKLLARFEKAPPEGLFNPHLFSEEE MPSFWNSIFAAVIPVILMAIAAVCEITLPKTNAVRVFFEFIGNPAVALFIAIIIAIFT LGRRNGRTVEQVMDIVGESIGAIAMIVFIIAGGGAFKQVLVDSGVGQYISQLMTGTSL SPLLMCWTVAAVLRIALGSATVAAITTAGVVLPIINVTHADPALMVLATGAGSVIASH VNDPGFWLFKGYFNLSVGETLRTWTVMETLISVMGLLGVLALNAVLH" misc_feature complement(4725817..4727130) /gene="idnT" /locus_tag="STM4482" /note="Anion permease ArsB/NhaD. These permeases have been shown to translocate sodium, arsenate, antimonite, sulfate and organic anions across biological membranes in all three kingdoms of life. A typical anion permease contains 8-13 transmembrane helices...; Region: ArsB_NhaD_permease; cl21473" /db_xref="CDD:473875" regulatory complement(4727132..4727137) /regulatory_class="ribosome_binding_site" /gene="idnT" /locus_tag="STM4482" /note="putative RBS for idnT; RegulonDB:STMS1H004355" gene complement(4727192..4727969) /gene="idnO" /locus_tag="STM4483" /db_xref="GeneID:1256009" CDS complement(4727192..4727956) /gene="idnO" /locus_tag="STM4483" /note="similar to E. coli 5-keto-D-gluconate 5-reductase (AAC77223.1); Blastp hit to AAC77223.1 (254 aa), 92% identity in aa 1 - 254" /codon_start=1 /transl_table=11 /product="5-keto-D-gluconate-5-reductase" /protein_id="NP_463343.1" /db_xref="GeneID:1256009" /translation="MNDLFSLAGKNILITGAAQGIGYLLATGLGRYGARIIVNDITPE RAETAVTKLQQEGIKAIAAPFNVTHKQDIEAAVEHIEKDIGVIDVLINNAGIQRRHPF TEFPEQEWNDVIAVNQTAVFLVSQAVTRRMVARQAGKVINICSMQSELGRDTITPYAA SKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTSWLCKRTPAARW GDPQELIGAAVFLSSKASDFVNGHLLFVDGGMLVAV" misc_feature complement(4727195..4727956) /gene="idnO" /locus_tag="STM4483" /note="gluconate 5-dehydrogenase; Provisional; Region: PRK08085" /db_xref="CDD:181225" misc_feature complement(order(4727369..4727380,4727384..4727395, 4727471..4727473,4727483..4727485,4727522..4727530, 4727609..4727611,4727669..4727680,4727756..4727764, 4727831..4727839,4727894..4727905,4727909..4727911)) /gene="idnO" /locus_tag="STM4483" /note="NADP binding site [chemical binding]; other site" /db_xref="CDD:187605" misc_feature complement(order(4727429..4727437,4727441..4727449, 4727453..4727458,4727465..4727470,4727477..4727482, 4727489..4727494,4727510..4727518,4727570..4727572, 4727579..4727581,4727588..4727593,4727600..4727602, 4727615..4727617,4727624..4727629,4727636..4727638, 4727642..4727656,4727747..4727749)) /gene="idnO" /locus_tag="STM4483" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:187605" misc_feature complement(order(4727471..4727473,4727483..4727485, 4727522..4727524,4727606..4727608)) /gene="idnO" /locus_tag="STM4483" /note="active site" /db_xref="CDD:187605" regulatory complement(4727964..4727969) /regulatory_class="ribosome_binding_site" /gene="idnO" /locus_tag="STM4483" /note="putative RBS for idnO; RegulonDB:STMS1H004356" gene complement(4727981..4729021) /gene="idnD" /locus_tag="STM4484" /db_xref="GeneID:1256010" CDS complement(4727981..4729012) /gene="idnD" /locus_tag="STM4484" /note="similar to E. coli L-idonate dehydrogenase (AAC77224.1); Blastp hit to AAC77224.1 (343 aa), 82% identity in aa 1 - 343" /codon_start=1 /transl_table=11 /product="L-idonate 5-dehydrogenase" /protein_id="NP_463344.1" /db_xref="GeneID:1256010" /translation="MEVKTQSCVVAGKRAVAVTEQNIEWNNKGTLVQITRGGICGSDL HYYQEGKVGNFTVKAPMILGHEVIGKIVHSDSDLLREGQPVAINPSEPCGHCKYCLQH EENHCTEMRFFGSAMYFPHVDGGFTRFKAVDTAQCIPWPEQADEKAMAFAEPLAVAIH AAHEAGDLQGKRIFISGVGPIGCLIVSAVKTLGAAEVVCADISTRSLSLARQMGADTL VNPQHDSLDDWKAEKGYFDISFEVSGHPSSISTCLEVTRAKGVMVQVGMGGAVPNFPM MMVISKEISLKGSFRFTTEFNTAVSWLANRVINPLPLLSAEYPFTDLEAALIFAGDKT QAAKVQLVF" misc_feature complement(4727984..4729012) /gene="idnD" /locus_tag="STM4484" /note="L-idonate 5-dehydrogenase; Provisional; Region: PRK09880" /db_xref="CDD:182130" regulatory complement(4729016..4729021) /regulatory_class="ribosome_binding_site" /gene="idnD" /locus_tag="STM4484" /note="putative RBS for idnD; RegulonDB:STMS1H004357" gene 4729218..4729759 /gene="idnK" /locus_tag="STM4485" /db_xref="GeneID:1256011" regulatory 4729218..4729223 /regulatory_class="ribosome_binding_site" /gene="idnK" /locus_tag="STM4485" /note="putative RBS for idnK; RegulonDB:STMS1H004358" CDS 4729229..4729759 /gene="idnK" /locus_tag="STM4485" /EC_number="2.7.1.12" /note="similar to E. coli gluconate kinase, thermosensitive glucokinase (AAC77225.1); Blastp hit to AAC77225.1 (187 aa), 86% identity in aa 1 - 171" /codon_start=1 /transl_table=11 /product="thermosensitive D-gluconate kinase" /protein_id="NP_463345.1" /db_xref="GeneID:1256011" /translation="MAGESYILMGVSGSGKSLIGSKIATLFSAKFIDGDDLHPAKNID KMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIVCSSLKKQYRDILRKSSPNVHF LWLDGDYATILQRMQRRAGHFMPPDLLQSQFDALERPCADEHDIARIDVNHDIEHVTE QCRLAVQAFRQALSAS" misc_feature 4729229..4729756 /gene="idnK" /locus_tag="STM4485" /note="gluconokinase; Region: idnK; PRK09825" /db_xref="CDD:182097" misc_feature order(4729256..4729279,4729325..4729327,4729331..4729333, 4729571..4729573,4729583..4729585) /gene="idnK" /locus_tag="STM4485" /note="ATP-binding site [chemical binding]; other site" /db_xref="CDD:238979" misc_feature order(4729262..4729267,4729583..4729585) /gene="idnK" /locus_tag="STM4485" /note="Gluconate-6-phosphate binding site [chemical binding]; other site" /db_xref="CDD:238979" gene complement(4729787..4730818) /gene="yjgB" /locus_tag="STM4486" /db_xref="GeneID:1256012" CDS complement(4729787..4730806) /gene="yjgB" /locus_tag="STM4486" /note="similar to E. coli putative oxidoreductase (AAC77226.1); Blastp hit to AAC77226.1 (353 aa), 91% identity in aa 15 - 353" /codon_start=1 /transl_table=11 /product="putative alcohol dehydrogenase" /protein_id="NP_463346.1" /db_xref="GeneID:1256012" /translation="MTIIKSYAAKEAGGELELYEYDAGELQPEDVEVRVDYCGICHSD LSMIDNEWGFSQYPLVAGHEVIGRVAALGSAAQDKGLKVGQRVGIGWTARSCGHCDAC ISGNQINCQEGAVPTILNRGGFAEKLRAGWQWVIPLPENIDMASAGPLLCGGITVFKP LLMHHITATSRVGVIGIGGLGHIAIKLLHAMGCEVTAFSSNPSKEQEVLAMGANNVVN SRDPEALKALAGQFDLIINTVNVDLDWQPYFEALTYGGNFHTVGAVLKPLPVPAFTLI AGDRSISGSATGTPYELRKLMKFAGRSKVAPTTELFAMSQINEAIQHVRDGKARYRVV LKADF" misc_feature complement(4729799..4730794) /gene="yjgB" /locus_tag="STM4486" /note="Cinnamyl alcohol dehydrogenases (CAD); Region: CAD1; cd05283" /db_xref="CDD:176186" misc_feature complement(order(4729946..4729954,4730021..4730026, 4730084..4730086,4730090..4730095,4730150..4730152, 4730195..4730197,4730207..4730212,4730264..4730281, 4730339..4730341,4730351..4730353,4730669..4730671, 4730678..4730686)) /gene="yjgB" /locus_tag="STM4486" /note="putative NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:176186" misc_feature complement(order(4729946..4729948,4730351..4730353, 4730534..4730536,4730618..4730620,4730678..4730680, 4730684..4730686)) /gene="yjgB" /locus_tag="STM4486" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:176186" misc_feature complement(order(4730351..4730353,4730618..4730620, 4730684..4730686)) /gene="yjgB" /locus_tag="STM4486" /note="catalytic Zn binding site [ion binding]; other site" /db_xref="CDD:176186" misc_feature complement(order(4730477..4730479,4730501..4730503, 4730510..4730512,4730519..4730521)) /gene="yjgB" /locus_tag="STM4486" /note="structural Zn binding site [ion binding]; other site" /db_xref="CDD:176186" misc_feature complement(order(4729949..4729972,4729979..4729984, 4729988..4729990,4730015..4730017,4730021..4730029, 4730042..4730044,4730318..4730320,4730330..4730332, 4730480..4730482)) /gene="yjgB" /locus_tag="STM4486" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:176186" regulatory complement(4730813..4730818) /regulatory_class="ribosome_binding_site" /gene="yjgB" /locus_tag="STM4486" /note="putative RBS for yjgB; RegulonDB:STMS1H004359" gene 4731014..4731095 /gene="leuX" /locus_tag="STM4487" /db_xref="GeneID:1256013" tRNA 4731014..4731095 /gene="leuX" /locus_tag="STM4487" /product="tRNA-Leu" /db_xref="GeneID:1256013" gene 4731324..4731619 /locus_tag="STM4488" /db_xref="GeneID:1256014" regulatory 4731324..4731329 /regulatory_class="ribosome_binding_site" /locus_tag="STM4488" /note="putative RBS for STM4488; RegulonDB:STMS1H004360" CDS 4731332..4731619 /locus_tag="STM4488" /note="similar to E. coli putative prophage integrase (AAC75495.1); Blastp hit to AAC75495.1 (431 aa), 39% identity in aa 35 - 123" /codon_start=1 /transl_table=11 /product="putative integrase" /protein_id="NP_463347.1" /db_xref="GeneID:1256014" /translation="MALTDLAIRHARLPGKAYRLFDCHGFYIQVNPSGSKLWYLKFRF GNKKNRMALGPYPLISLALAREKQADIRRLILEGINPAEKRREDKRGGEPL" misc_feature 4731338..4731571 /locus_tag="STM4488" /note="Arm DNA-binding domain; Region: Arm-DNA-bind_3; pfam13356" /db_xref="CDD:433141" gene 4731975..4735496 /locus_tag="STM4489" /db_xref="GeneID:1256015" regulatory 4731975..4731980 /regulatory_class="ribosome_binding_site" /locus_tag="STM4489" /note="putative RBS for STM4489; RegulonDB:STMS1H004361" CDS 4731981..4735496 /locus_tag="STM4489" /note="similar to E. coli putative frameshift suppressor (AAC77264.1); Blastp hit to AAC77264.1 (338 aa), 68% identity in aa 1 - 338" /codon_start=1 /transl_table=11 /product="putative superfamily I DNA helicases" /protein_id="NP_463348.1" /db_xref="GeneID:1256015" /translation="MDDNALGFASYWRNSLADAESGKGSFERKDAKNFTHWHGIAAGR LDETIVGKFFEGEKDDVETVDVILRPKVYFRLLQRGKDHSAGAPDIVTPIVTPALLSR EGFLYPTPATSIPRDLLEPLPKGAFSIGEIEQYDKYKTTHTSFSINFDDRVDKTAETD EEREARYAAWQQDWRQYLDDSERLLKNVVGDWIKNPEQYELAEHGYIVKTAQSGGASF HILSLYDHLLVCKKDVPLFNRFASREVHAAESLLPPEAKFSDRIGHSGDKFPLAKAQR DALSHFLDARHGDILAVNGPPGTGKTTLVLSIIATQWARAALEKAEPPVIIATSTNNQ AVTNIIEAFGKDFSQGTGAMAGRWLPELKSFGAYFPSSTRKAEAAKKYQTEDFFNQVE SKEYVEDALLFYLEKAKAAFPEKECSSPEKVIELLHGQLAAKSEQLVRLNATWQTLSQ VRATRELIDNDIEQYLDNLNKLLSGQEQKVTQLKSAKAEWKKYRASESLIYPLFSWLP VVRSKRQYQIQLFLEDKLGALIAGNQWSDPETIERNIDRLLNSAEREQTTYRQQIDSA HEIVLKEQQAAQEWQRLALDLGHEGDEELSFSQADELADTQIRFPAFLLTTHYWEGRW LMDMAGIDDLQKEKGKKGAKGVTARWQRRMKLTPCVVMTCYMLPGNMQISEHKGQRKF EKSYLYDFADLLIVDEAGQVLPEVAAASFALAKKALVIGDTEQIPPIWSITPAIDIGN MLAEKILSGSTQEEITEKYTAIAELGKSAASGSVMKIAQCASRYQYDPELARGMYLYE HRRCFDNIIGYCNTLCYHGKLLPKRGCEESNLMPAMGYLHIDGKGELASSGSRYNLLE AETIAAWLTDNQQSIEAHYGKSLHEVVGIVTPFSAQVPTIKQALDKQGISAGTNETSL TVGTVHSLQGAERAIVIFSPVYSKHEDGAFIDSDNSMLNVAVSRAKDSFLVFGDMDLF EIQPASSPRGLLAKYLFESEKNALTFDYKERKDLKTAETKIYTLHGVEQHDNFLNQTF ENTDKHITIVSPWLTWQKLEQTGFLDSMITACSRGINVTVVTDRSYNTEHNDFEKRKE KQQNLKAALEKLNALGIATKLVNRVHSKIVIGDDGLLCVGSFNWFSATREARYERYDT SMVYCGDNLKGEIEAIYNSLDRRQV" misc_feature 4732428..4734944 /locus_tag="STM4489" /note="Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]; Region: DNA2; COG1112" /db_xref="CDD:440729" misc_feature 4735041..4735487 /locus_tag="STM4489" /note="C-terminal domain of Escherichia coli uncharacterized protein yjhR and similar proteins; Region: PLDc_yjhR_C_like; cd09118" /db_xref="CDD:197217" misc_feature order(4735320..4735322,4735326..4735328,4735365..4735367, 4735371..4735373,4735413..4735415) /locus_tag="STM4489" /note="putative active site [active]" /db_xref="CDD:197217" misc_feature 4735320..4735322 /locus_tag="STM4489" /note="catalytic site [active]" /db_xref="CDD:197217" gene 4735588..4736582 /locus_tag="STM4490" /db_xref="GeneID:1256016" regulatory 4735588..4735593 /regulatory_class="ribosome_binding_site" /locus_tag="STM4490" /note="putative RBS for STM4490; RegulonDB:STMS1H004362" CDS 4735593..4736582 /locus_tag="STM4490" /codon_start=1 /transl_table=11 /product="putative Mrr restriction endonuclease" /protein_id="NP_463349.1" /db_xref="GeneID:1256016" /translation="MIRGDGGKLYDDFRDKQVVAIGWSQLAPYVKPGCSREQLFTRYQ ELEPQTKSGTVRSGASQVWRFVNEMQKGDWAITYSPSNRTYLIGKIASDFEFHAEWLE DGMGIARKVKWNAEEIKRDSLSDATRNTLGSTLTVFQVPDFAVNELVQGKKPVSDVVP EVPVSGEEDEVVSNPLRDMEMIAFEGIKDRINRLDWDEMQNLVAGVLRSMGYKTQVSP AGADREKDIIASPDGFGFENPRIIVEVKHRREQMSSQQIRSFIGGRHKDDRGLYVSTG GFSKDARYEADRSTIPLTLWTLDDLVRALVENYEQVDIETKLLVPLKKTYLPA" misc_feature 4735593..4736153 /locus_tag="STM4490" /note="Predicted restriction endonuclease, Mrr-cat superfamily [General function prediction only]; Region: COG4127" /db_xref="CDD:443303" misc_feature 4736163..4736507 /locus_tag="STM4490" /note="Restriction endonuclease; Region: Mrr_cat; pfam04471" /db_xref="CDD:461322" gene complement(4736695..4738785) /locus_tag="STM4491" /db_xref="GeneID:1256017" CDS complement(4736695..4738779) /locus_tag="STM4491" /note="similar to E. coli DNA-binding, ATP-dependent protease La; heat shock K-protein (AAC73542.1); Blastp hit to AAC73542.1 (784 aa), 27% identity in aa 610 - 757, 26% identity in aa 193 - 259, 50% identity in aa 352 - 363" /codon_start=1 /transl_table=11 /product="putative ATP-dependent Lon protease" /protein_id="NP_463350.1" /db_xref="GeneID:1256017" /translation="MQTHHDLPVPAVSEGELVAEGYDLDALLNQHFRGRVVRKDLTKQ LKEGANVPVYVLEYLLGMYCASDDDQIVEQGLQNVKRILADNYVRPDEAEKVKSLIRE RGSYKIIDKVSVKLNQKKDVYEAQLSNLGIKDALVPPQMVKDNEKLLTGGIWCMITVN YFFEEGQKTSPFSLMTLKPIQMPNMDMEEVFTARTHFNRDQWIDVLLRSVGMEPANIE QRTKWHLITRMIPFVENNYNVCELGPRGTGKSHVYKECSPNSLLVSGGQTTVANLFYN MASRQIGLVGMWDVVAFDEVAGITFKDKDGVQIMKDYMASGSFSRGRDSIEGKASMVF VGNINQSVETLVKTSHLLAPFPAAMIDTAFFDRFHAYIPGWEIPKMRPEFFTNRYGLI TDYLAEYMREMRKRSFSDAIDKFYKLGNNLNQRDVIAVRRTVSGLLKLLHPNGSYSKE DVRVCLTYAMEARRRVKEQLKKLGGLEFFDVNFSYIDNETLEEFFVSVPEQGGSELIP AGMPKPGVVHLVTQAESGMTGLYRFETQMTAGNGKHSVSGLGSSTSAKEAIRVGFDYF KGNLSRVSATAKFSEHEYHLHVVELHNTGPSTATSLAALIALCSVLLAKPVQEQMVVL GSMTLGGVINPVQDLAASLQLAFDSGAKKVLLPMSSAVDIPTVPAELFTKFQVSFYSE PVDAVYKALGVN" misc_feature complement(4736698..4738719) /locus_tag="STM4491" /note="conserved hypothetical protein; Region: Lon_rel_chp; TIGR02653" /db_xref="CDD:131701" regulatory complement(4738780..4738785) /regulatory_class="ribosome_binding_site" /locus_tag="STM4491" /note="putative RBS for STM4491; RegulonDB:STMS1H004363" gene complement(4738790..4741391) /locus_tag="STM4492" /db_xref="GeneID:1256018" CDS complement(4738790..4741387) /locus_tag="STM4492" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463351.1" /db_xref="GeneID:1256018" /translation="MQNQEFIAGLKAKFAEHRIVFWHDPDKRFLEELDNLELENVTLL DMTDQSQLAVKKRIEIDEPEQQFLLWFPHDAPPKEFDWLLDIRLYSTEFHADFAAITL NTLGIPQLGLREHIQRRKAFFSTKRLSALKGLVTEQENEASLDKKMVAVIAGVKTAKT EEILFSLITQYVNQQKDDDSDLENTLAMLKRHDLEGVLWDILNQEMGYQAEHPTLENL ILKLFCTDLSAQADPQKREWLEKNVLATPSGRASALAFMVTWRADRRYKEAYDYCAQQ MQDALRPEDQYRLSSPYDLHECETTLSIEQTIIHALVTQLLEESTTLDREAFKKLLSE RQSKYWCQTRQEYCAIYDALRQAERLLNLRNRHIDGFHYQDSATFWKAYCEELFRFDQ AYRLFNEYALLVHSKGAMILKSLDDYIEALYSNWYLAELSRSWNKVLETENRMQEWRI AGVPRQQNFYNEVVKPQFNNPQIKRVFVIISDALRYEVAEELGNQINTEKRFTAELRS QLGVLPSYTQLGMAALLPHDEICYQPGSGDIVYADGLSTSGTPNRDTILKKYKGMAVK SDDLLKWKNQQGRDLIRDYEVVYIWHNTIDAMGDSASTEEKTFEACRNAVVELKDLVT RVINRLHGTRIIVTADHGFLFQQQPLSGQDKTTLQIKPDNTIKNHKRFIIGHQLPADD FCWKGKVADTAGVSDNSEFLIPKGIQRFHFSGGARFVHGGAMLQEVCVPVLQVKALQK TAAEKQPQRRPVDIVKHHPLIKLVNNIDKVSLLQTHPVGELYEPRTLNIFIVDNANNV VSGKERICFDSDNNTMEKRVRDVTLKLIGANFNRRNEYWLILEDAQTETGYQKYPVII DLAFQDDFF" misc_feature complement(4738820..4741378) /locus_tag="STM4492" /note="TIGR02687 family protein; Region: TIGR02687" /db_xref="CDD:274259" regulatory complement(4741386..4741391) /regulatory_class="ribosome_binding_site" /locus_tag="STM4492" /note="putative RBS for STM4492; RegulonDB:STMS1H004364" gene complement(4741390..4742215) /locus_tag="STM4493" /db_xref="GeneID:1256019" CDS complement(4741390..4742211) /locus_tag="STM4493" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463352.1" /db_xref="GeneID:1256019" /translation="MRKMASVKQIIRDIKEQKVATTGRRVLLVEGTDDVTAFQNFLSR KFPAWEQDWILAPAGSKKNVLEALALEANWLGVVDRDAWTDVQIAEKRRNLANLLVLP RFCIESYLIAPEELWLVFQPKHQQAINGGIQAFIQAVHDVLPQWRNHAALWNVIHPLW ERLRAAGFNTAFHDLNTAQNDAEVEQCLRQWSQHLDPDVLLAQIQTQKTNIAARSPTT QLTQCFHGKMFFEQAIDPLLTQLLGQRAREQRQKDLFRTLPVPDDLTFIWNEMGL" misc_feature complement(<4741876..4742142) /locus_tag="STM4493" /note="Protein of unknown function (DUF4435); Region: DUF4435; pfam14491" /db_xref="CDD:433988" gene complement(4742189..4743287) /locus_tag="STM4494" /db_xref="GeneID:1256020" CDS complement(4742189..4743280) /locus_tag="STM4494" /codon_start=1 /transl_table=11 /product="putative ABC-type sugar/spermidine/putrescine transport systems, ATPase component" /protein_id="NP_463353.1" /db_xref="GeneID:1256020" /translation="MKIAAIYTQSVGPLPDGEIRFENDWSGEIESNVLITGPNGCGKS TLLRAISLLWRAFGHWLGTGTRLNIKDESYTWFYRWDASCAMILDSFSPKSEDQIGLF LGSEAFLVQLKEKYPQVYWLGETVSRTKGTTPETTVFTSSEHFFLPYKNWWSHWSSQY QRLVLKGPSVDMPNLVYLDAEARRWVRPQKDIGSLSPDDSTQAWLATYEVNDNWKGQL ESSLFNMKATMPGEYPEMIATLNQFFSGKRIEAEIHPGQRQRVLLDSGNDHSLDALSS GEHQVLIMLFTVQRWLQPGGVVLIDEPDLHLHPSLISPLLASIENIVARKNGQLVMTS HATDIWQRYDNMGLRIDLTDGKDAENGQR" misc_feature complement(<4743131..4743280) /locus_tag="STM4494" /note="Uncharacterized conserved protein YhaN, contains AAA domain [Function unknown]; Region: YhaN; COG4717" /db_xref="CDD:443752" misc_feature complement(4742276..4743187) /locus_tag="STM4494" /note="AAA domain, putative AbiEii toxin, Type IV TA system; Region: AAA_21; pfam13304" /db_xref="CDD:433102" regulatory complement(4742210..4742215) /regulatory_class="ribosome_binding_site" /locus_tag="STM4493" /note="putative RBS for STM4493; RegulonDB:STMS1H004365" gene complement(4743280..4746964) /locus_tag="STM4495" /db_xref="GeneID:1256021" CDS complement(4743280..4746957) /locus_tag="STM4495" /codon_start=1 /transl_table=11 /product="putative type II restriction enzyme, methylase subunit" /protein_id="NP_463354.1" /db_xref="GeneID:1256021" /translation="MNTNNIKKYAPQARNQFRDAVIQKLTTLGISADKKGNLQIADAE LVGETMRYGQFDYPKSTLTRRDRLVKRAREQGFDVLVEHCAYTWFNRLCAIRYMEIHG YLDHGFHMLSHPDNPTGFEVLDHVPEVAEALLPEKKAQLVEMKLSGNQDEAIYRELLL AQCHALHRAMPFLFEAVDDEAELLLPDNLTRTDSILRGLVDGIPEEDWQEVEVIGWLY QFYISEKKDAVIGKVVKSEDIPAATQLFTPNWIVQYLVQNSVGRQWLQTYPDSPLKGK MDYYIEPAEQTPEVQAQLAAITPASIEPESIKVLDPACGSGHILIEVYNVLKNIYEER GYRARDIPQLILENNIFGLDIDDRAAQLSGFALLMMARQDDRRIFTRDVRLNIVSLQE SLHLDIAKLWQQLNFHQQNQTGSMGDMFAENTALAHTDSAEYQLLMRTLKRFVNAKTL GSLIQVPQEEEAELKAFLEALYRMEQEGDFQQKAAAKAFIPYIQQAWILAQRYDAVVA NPPYMGGKGMNSELKEFAKNNFPDSKADLFAMFMQNAFSLLKENGFNAQVNMQSWMFL SSYEALRNWLLDNKTFITMAHLGARAFGQISGEVVQTTAWVIKNQHSERYQPVFFRLI DGREEVKKSDLLLRKNIFDKFTQHDFKNIPGMPIAYWIDLPSLLSFRHHKKLGEKIAL KAGMSTGDNIKFQRYWYEVSIKKTLITNKESNTKIDIHNIKWFPCSSGGEYRKWYGNN EIVVNWENNGYEIRNFKFENGKTRSAVRNDEYYFREGITWSKISQGNFCVRYRPKGFV FDDTGRCGFSNNKNELLYAAGLMCTPVVNHYLSILAPTLSFTSGELASVPYPEIEDEI IELVTNAIEIAKNDWDSQEQSWDYVCSPLLEHNSTQLLRNIYKQKINTNIKLVETLLL IENTINNIFIDKLQLDKTIIKAVLQSEITLLCNPNYRYKNIQDHTDLTNKYYTDITID ILSYIIGCMMGRYSLDREGLVYAHEGNKGFAELVAEDAYKTFPADNDGILPLMDDEWF DDDVTSRVKEFVRTVWGEEHLQENLEFIAESLCLYAIKPKKGESALDTIRRYLSTQFW KDHMKMYKKRPIYWLFSSGKEKAFECLVYLHRYNDATLARMRTEYVVPLLARYQANID RLNEQVDGASGGEATRLKRERDSLSKKFNELRSFDDRLRHYADMRISIDLDDGVKVNY GKFGDLLADVKAITGNAPEII" misc_feature complement(4743328..4746942) /locus_tag="STM4495" /note="BREX-1 system adenine-specific DNA-methyltransferase PglX; Region: BREX_1_MTaseX; NF033452" /db_xref="CDD:468037" regulatory complement(4743282..4743287) /regulatory_class="ribosome_binding_site" /locus_tag="STM4494" /note="putative RBS for STM4494; RegulonDB:STMS1H004366" regulatory complement(4746959..4746964) /regulatory_class="ribosome_binding_site" /locus_tag="STM4495" /note="putative RBS for STM4495; RegulonDB:STMS1H004367" gene complement(4747003..4750644) /locus_tag="STM4496" /db_xref="GeneID:1256022" CDS complement(4747003..4750644) /locus_tag="STM4496" /codon_start=1 /transl_table=11 /product="putative ATPase involved in DNA repair" /protein_id="NP_463355.1" /db_xref="GeneID:1256022" /translation="MNIEQIFEKRLDRNINGVVKAEQTDDASAWIELDEYVITRELEG HLRHFFESYVPATGPDRIRMENKIGVWVSGFFGSGKSHFIKILSYLLSNRKVSHNGTE RHAYSFFEDKIKDALFLADINKAVHHPTEVILFNIDSRANVDDKEDAILKVFLKVFNE RVGYCADFPHIAHLERELAKRGQYDAFKTAFATITDSSWEKERDSYYFISDEMAEALS QATGQSVDASRQWVEQLDKNFPLDINNFCQWVKEWLDENGKNILFMVDEVGQFIGKNT QMMLKLQTITENLGVICGGRAWVIVTSQADINAAIGGMSSRDGQDFSKIQGRFSTRLQ LSSSNTSEVIQKRLLVKTDAAKPALAKVWQEKGDILRNQLAFDPTTTASLRPYTSEEE FIDNYPFVPWHYQILQKVFESIRTKGAAGKQLAMGERSQLEAFQTAAQQISPQGLDSL VPFWRFYAAIESFLEPAVSRTITQACQNGILDEFDGNLLKTLFLIRYVDVLKSTLDNL VTLSIDKIDTDKVELRRRVEKSLNKLEREMLIARVEDKYVFLTNEEKEIENEIRNVEV DFSAINKKLASIIFDDILKNRKYRYPANKQDFDISRFLNGHPLDGAMLNDLVVKILTP KDPTYDFYDNDAACRPYTSEGDGCILIRLPADARTWTDIDLVVQTEKFLRDNAGQRPE QASLLSEKARENSVREKMLRVQLESLIAEADVWAIGERLPKKSSTPSSIVDEACRYVI ENTFAKLKMLRPFNGDIAREIHALLTVENDAELDLGELEESNPDAMREVETWVSMNIE FNKPVYLRDILNHFARRPYGWPEEEVKLLVARLARKGKFSFSQQNNNIERKQVWELFN NSRRHSELRLHKIRRHDESQIRKAAQTMAEIAQQPFSEREEPALVEHIRQVFNDWKQE LNVFKAKAEGGNNPGKDEIESGLRLLNSILSEKEDFALIEKVTSQVNELLDFSEDREN LVDFYRKQFATWQKLGAALNGSFKSNRSALEKDAVAVKALGELENIWQMPEPYKHLNR ITPLIEQVQNVNHQLVEQHRQHALERIDARIEESRQRLQEAHATSELQNSVLLPMQKA RKRAEVSQSIPEILAEQQETMALQTDAEKKINQWIDELRKKQEAQLRAANEAKRAAES QQTYVVVEKPVIQPVPKKTHLVNVASEMRKATGGEVLETAEQVEKALDTLRTSLLAAI EAGDRIRLQ" misc_feature complement(4747042..4750641) /locus_tag="STM4496" /note="Family of unknown function (DUF6079); Region: DUF6079; cl38946" /db_xref="CDD:476826" gene complement(4750656..4751265) /locus_tag="STM4497" /db_xref="GeneID:1256023" CDS complement(4750656..4751258) /locus_tag="STM4497" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463356.1" /db_xref="GeneID:1256023" /translation="MIDPVLEYRLSQVQSRISEERFLKNNGSGNEIGFWIFDYPAQNE LQVREHLKYLLRNLEKDHKFAHLNIFQIIVDMLTERGLFDRVCQQEVKVGTEALKKQL VGLLNQKKIADYIAKKVDLQNQEFVILTGMGNAWPLVRGHELMSALQDVMGFTPLLMF YPGTYSGHDLSPLAGIDSRNYYRAFRLVPESGPAATLNPR" misc_feature complement(4750710..4751063) /locus_tag="STM4497" /note="BREX protein BrxB; Region: BrxB; pfam08747" /db_xref="CDD:430188" gene complement(4751255..4751863) /locus_tag="STM4498" /db_xref="GeneID:1256024" CDS complement(4751255..4751857) /locus_tag="STM4498" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463357.1" /db_xref="GeneID:1256024" /translation="MKNDKAWIGDLLGGPLMSRESRIIAELMLTAPNEQTWQEQIVGH NILQASSANTAKRYATTIKLRLNTLDKVAWSLIAEGSERERQQLLFVALILHSPVVKD FLAEVVNDLCRQFKEKLPMDSWDEFVANHLRQQPVLTSYSDSSIKKMGNNLIKALAEA GYLDTPRRRNLQSVFLLPETQATLQRLGQQELVSILEGQR" misc_feature complement(4751303..4751845) /locus_tag="STM4498" /note="Region: BrxA; pfam08849" /db_xref="CDD:462619" regulatory complement(4751260..4751265) /regulatory_class="ribosome_binding_site" /locus_tag="STM4498" /note="putative RBS for STM4497; RegulonDB:STMS1H004368" regulatory complement(4751858..4751863) /regulatory_class="ribosome_binding_site" /locus_tag="STM4498" /note="putative RBS for STM4498; RegulonDB:STMS1H004369" gene complement(4752683..4753414) /gene="yeeN" /locus_tag="STM4499" /db_xref="GeneID:1256025" CDS complement(4752683..4753408) /gene="yeeN" /locus_tag="STM4499" /note="similar to E. coli orf, hypothetical protein (AAC75047.1); Blastp hit to AAC75047.1 (238 aa), 95% identity in aa 1 - 238" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463358.3" /db_xref="GeneID:1256025" /translation="MFPVGRKWANIVAKKTAKDGATSKVYAKFGVEIYAAAKQGEPDP ESNSALKFVIERAKQAQVPKHVIDKAIDKAKGGGDETFVQGRYEGFGPNGSMVIAETL TSNVNRTIANIRTIFNKKGGNIGAAGAVSYMFDNTGVIVFKGTDPDHIFEILLDAEVD VRDVTEEEGNIVIYTEATDLHKGIAALKAAGISEFSTTELEMIAQSEVELSPEDLEIF EGLVDALEDDDDVQKVYHNVANL" misc_feature complement(4752692..4753396) /gene="yeeN" /locus_tag="STM4499" /note="YebC/PmpR family DNA-binding transcriptional regulator; Region: PRK12378" /db_xref="CDD:237084" regulatory complement(4753409..4753414) /regulatory_class="ribosome_binding_site" /gene="yeeN" /locus_tag="STM4499" /note="putative RBS for yeeN; RegulonDB:STMS1H004370" gene complement(4753959..4755596) /gene="yjhP" /locus_tag="STM4500" /db_xref="GeneID:1256026" CDS complement(4753959..4755590) /gene="yjhP" /locus_tag="STM4500" /note="similar to E. coli putative methyltransferase (AAC77262.1); Blastp hit to AAC77262.1 (248 aa), 30% identity in aa 1 - 138" /codon_start=1 /transl_table=11 /product="putative SAM-dependent methyltransferase" /protein_id="NP_463359.1" /db_xref="GeneID:1256026" /translation="MMMDISAVIFATHRIRLLPDEGKIPWDEPAFSQRMLENHLSQDH DWASRRLTVIEQQVTWITRQLPAGARILDLGCGPGFYTRLLAERGFHCTGVDFSPASI TWARQQAQAANLNIDYIQQDIRTYHPTEPFDFIMMTFGELNVFSAADAQSLISHCAQW LKPDGKLLVEVHTFDEVKRQGMAQPGWQRCPHGLFLAEPHLLLTENAWDEEAQTSSTQ FWAIAENGCTTRFGSQMKAWRDDEYISLLGDAGFTVLQRPDSHTWPVGETFAGKLFAL LVEKVSTSEGIALSKRNNPMDIPRIFTISESEHRIHNPFTAEKYATLGHALRMKPGMR ILDLGSGSGEMLCTWARDYGVTGTGIDISPLFTTQAKQRAEELGVSEYVHFIHNDAAG YIDEEKYDVAACVGATWIAGGVAGTIDLLAKSLKPGGIILIGEPYWRRIPATEEIAHA CGVSSVADFRPLPELVAFFDQLGYDVVEMVLADPQGWDRYEAAKWMTMRRWLEENPDD EFAQEVRTELTVAPKRHVTWTREYFGWGVFALIAR" misc_feature complement(4755078..4755470) /gene="yjhP" /locus_tag="STM4500" /note="2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1, 4-benzoquinol methylase [Coenzyme transport and metabolism]; Region: UbiG; COG2227" /db_xref="CDD:441829" misc_feature complement(4754283..4754675) /gene="yjhP" /locus_tag="STM4500" /note="Cyclopropane fatty-acyl-phospholipid synthase and related methyltransferases [Lipid transport and metabolism]; Region: Cfa; COG2230" /db_xref="CDD:441831" regulatory complement(4755591..4755596) /regulatory_class="ribosome_binding_site" /gene="yjhP" /locus_tag="STM4500" /note="putative RBS for yjhP; RegulonDB:STMS1H004371" gene complement(4755595..4755858) /locus_tag="STM4501" /db_xref="GeneID:1256027" CDS complement(4755595..4755852) /locus_tag="STM4501" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463360.1" /db_xref="GeneID:1256027" /translation="MNLSRQEQRTLHVLAKGGRITHIRDASGRVTAVECYSREGLLLA DCTLAVFKKLKTKKLIKSVNGQPYRINTTGLNNVRAQPDNR" misc_feature complement(4755598..4755852) /locus_tag="STM4501" /note="hypothetical protein; Provisional; Region: PRK13687" /db_xref="CDD:184244" regulatory complement(4755853..4755858) /regulatory_class="ribosome_binding_site" /locus_tag="STM4501" /note="putative RBS for STM4501; RegulonDB:STMS1H004372" gene 4756335..4756949 /locus_tag="STM4502" /db_xref="GeneID:1256028" regulatory 4756335..4756340 /regulatory_class="ribosome_binding_site" /locus_tag="STM4502" /note="putative RBS for STM4502; RegulonDB:STMS1H004373" CDS 4756341..4756949 /locus_tag="STM4502" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463361.1" /db_xref="GeneID:1256028" /translation="MKVIWTVTPVGYQRIAKRCPSCSVKRDFTPSGAFRVNSQKKVLD VWSIYKCTHCDYTWNISLFSRLPVSKINRDLYCRLMANDAATVQYFAYDNAILKRNNA ELSGQPDFHIQERWLVSIASHKQVSVSVRISRSFQVSLLSILKKQLLLSAAEIKRRIE TGQISGVTMKMLKSRKLKNAKYDLQLSVETLYDRRRIVLTCR" misc_feature 4756344..4756916 /locus_tag="STM4502" /note="Uncharacterized conserved protein, DUF1062 domain [Function unknown]; Region: COG4332" /db_xref="CDD:443473" gene 4757456..4758196 /locus_tag="STM4503" /db_xref="GeneID:1256029" regulatory 4757456..4757461 /regulatory_class="ribosome_binding_site" /locus_tag="STM4503" /note="putative RBS for STM4503; RegulonDB:STMS1H004374" CDS 4757459..4758196 /locus_tag="STM4503" /note="unknown (gi|5616505)" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463362.1" /db_xref="GeneID:1256029" /translation="MELQALRYAAMISTMSFAKACEYYQAYLWKHGIDENAKEKLLDF VELEENELADFGKDIRIVLASADFSKELTTTAIWLRDKGVDIRCVRLTPYNFKGEVLI NAEQIIPVPELEEYQVRFREKRTEQIISSQKSERDYSLYKYKGKTFNKRKLALELFTD WINKHNPANIDDLKNKLSEDLQKRTVALVEQIPEKRKNRYHMQEDALIELPSGERIAI SNQWGLGTIELLIDFVRQDNFVVEKVG" gene 4758465..4759383 /locus_tag="STM4504" /db_xref="GeneID:1256030" regulatory 4758465..4758470 /regulatory_class="ribosome_binding_site" /locus_tag="STM4504" /note="putative RBS for STM4504; RegulonDB:STMS1H004375" CDS 4758472..4759383 /locus_tag="STM4504" /note="IicA (gi|5616506)" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463363.1" /db_xref="GeneID:1256030" /translation="MHTFRPYSLRHSDLLYEDIPLEIREQIILLIINTLGNCSSFYDM TLYCYHNSHSDEVYRRICKTLRKEYGLFTLYAHSTSYLDEMSNLLLKTDDKRKHIDTI ELAFNYIDTYLRTYEVTLGLEPDKAISELNNIFHEHSLKYRYENGRIVRLRRIKRLKN ICYYLYSPGEYGFVEYDLMEAYNRLMLNDFACVVKECHAVFRSVLLRIHERKGIVYHE QDSLNTLMTNLMARGVISAEYAHKFHFLSNVLESEIFLPMAPEKSHHHYAMMLRISEE LACSIYYLTERSIFFLTQRAEEDSVAP" misc_feature 4758484..4758972 /locus_tag="STM4504" /note="AbiJ N-terminal domain 4; Region: AbiJ_NTD4; pfam18863" /db_xref="CDD:465890" gene 4759582..4760049 /locus_tag="STM4505" /db_xref="GeneID:1256031" regulatory 4759582..4759587 /regulatory_class="ribosome_binding_site" /locus_tag="STM4505" /note="putative RBS for STM4505; RegulonDB:STMS1H004376" CDS 4759588..4760049 /locus_tag="STM4505" /codon_start=1 /transl_table=11 /product="putative inner membrane or exported" /protein_id="NP_463364.1" /db_xref="GeneID:1256031" /translation="MSTILKPFLLAVTLMLILIRPGFATEDGAITMVKTYSAYDYLQT RARLMHAVADHGLVLFGEFDHARAAQNVNLKMPPTTVLVFGNPKGGTPLMLAHPELAL DLPFRVLISQQADGRTLVSYHPAETLQRYGLDAADIQALKKLEQLVEKSLH" misc_feature 4759681..4760037 /locus_tag="STM4505" /note="Uncharacterized domain family DUF302; Region: DUF302; cd14797" /db_xref="CDD:269820" misc_feature order(4759687..4759689,4759768..4759770,4759774..4759776, 4759780..4759782,4759792..4759794,4759801..4759803, 4759822..4759824,4759828..4759830,4759846..4759848, 4759858..4759860,4759867..4759869,4759879..4759884, 4759888..4759902,4759906..4759908,4759912..4759914, 4759918..4759920,4759948..4759956,4759966..4759968) /locus_tag="STM4505" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:269820" gene complement(4760046..4760720) /locus_tag="STM4506" /db_xref="GeneID:1256032" CDS complement(4760046..4760720) /locus_tag="STM4506" /codon_start=1 /transl_table=11 /product="putative dienelactone hydrolase" /protein_id="NP_463365.1" /db_xref="GeneID:1256032" /translation="MIKDTVFFAPGVSGGSNASSLSSRHRRAAIILHEIYGINAHIQR AGHEWMTRGFDIYIPALFPHHTPFRYEQQEEAYRHFSANVGFDPAVVTTLLHDLRTQY ETLIVVGYSVGATLAWLSAASGLCDGVVCYYGSRIRQYLHLAPLCPTLVIVARYEPAF DPLAMRQALEKRPRVQCKMYDARHGFCDADSATFDAALSHQVMDDVTAFIRDITCANT SPDFQL" misc_feature complement(4760094..4760645) /locus_tag="STM4506" /note="Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism]; Region: DLH; COG0412" /db_xref="CDD:440181" gene 4761051..4761843 /gene="uxuR" /locus_tag="STM4507" /db_xref="GeneID:1256033" regulatory 4761051..4761056 /regulatory_class="ribosome_binding_site" /gene="uxuR" /locus_tag="STM4507" /note="putative RBS for uxuR; RegulonDB:STMS1H004377" CDS 4761070..4761843 /gene="uxuR" /locus_tag="STM4507" /note="similar to E. coli regulator for uxu operon (AAC77280.1); Blastp hit to AAC77280.1 (257 aa), 89% identity in aa 1 - 257" /codon_start=1 /transl_table=11 /product="transcriptional repressor for uxu operon" /protein_id="NP_463366.1" /db_xref="GeneID:1256033" /translation="MKSNTSQQRPYQEVGAMIRDLIVQTPYRPGERLPPEREIAERLN VTRTVVREALIMLEIKGLVEVRRGAGIYVLDSADNNEMEGADVNHCNDAGPFELLQAR QLLESNIAEFAALQATREDIIKMRQALQLEERELASSAPGGSESGDMQFHLAIAEATH NSMLVELFRQSWQWRENNPMWLQLHSHLGDTLYRKEWLVDHKQILAALIKKDARAAKL AMWQHLENVKQRLLEFSNVDDIYFDGYLFESWPLDNVDA" misc_feature 4761070..4761840 /gene="uxuR" /locus_tag="STM4507" /note="Uxu operon transcriptional regulator; Region: PRK10225" /db_xref="CDD:182318" gene complement(4761844..4762864) /gene="trpS2" /locus_tag="STM4508" /db_xref="GeneID:1256034" CDS complement(4761844..4762857) /gene="trpS2" /locus_tag="STM4508" /EC_number="6.1.1.2" /note="similar to E. coli tryptophan tRNA synthetase (AAC76409.1); Blastp hit to AAC76409.1 (334 aa), 26% identity in aa 2 - 329" /codon_start=1 /transl_table=11 /product="putative tryptophanyl-tRNA synthetase" /protein_id="NP_463367.1" /db_xref="GeneID:1256034" /translation="MNTLPIILTGDRPTGSLHLGHYVGSLRQRVALQQDHQQYVLIAD LQGLTDNGSNPQKIRDNIPQVLADYLAVGIDPTLTTICLQSALPALAELTVLYMNIVT VARVERNPTVKNEIAQKGFTRSLPVGFMAYPISQAADITAFKAEMVPVGDDQLPMIEQ TNEIVHKMNSLFSSPVLRPCQALLSDTGRLPGIDGSAKMSKSLGNTLLLSASEETIHR AVSAMYTDPNHLKISDPGKIEGNVVFTWLDAFHPDKAKVAAMKAHYQQGGLGDRVCKN ELETCLQELIAPIRERRATFIADKGMLMELLKKGSERAHEVTQKTLQEVKRGLGLPTL FQV" misc_feature complement(4761862..4762851) /gene="trpS2" /locus_tag="STM4508" /note="tryptophanyl-tRNA synthetase II; Reviewed; Region: PRK12282" /db_xref="CDD:183400" regulatory complement(4762859..4762864) /regulatory_class="ribosome_binding_site" /gene="trpS2" /locus_tag="STM4508" /note="putative RBS for trpS2; RegulonDB:STMS1H004378" gene 4763572..4764105 /locus_tag="STM4509" /db_xref="GeneID:1256035" regulatory 4763572..4763577 /regulatory_class="ribosome_binding_site" /locus_tag="STM4509" /note="putative RBS for STM4509; RegulonDB:STMS1H004379" CDS 4763575..4764105 /locus_tag="STM4509" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463368.3" /db_xref="GeneID:1256035" /translation="MAGKWNVLSLLAFRPCQPALPHDNHGGGMDAIYLKLDGIEGESR IKGFENQIKLIAYNHNPTKRESGEARGTYIGGLTLTKPVDLATPGLYEHYCNGKTVKE GVLTLCRRDKGAMLPFIIYTLTNVRISRMSNHGDAEGSATETVDLVYSHIRWDIPALA SKSKTRRPLHRQALWR" misc_feature 4763659..4764069 /locus_tag="STM4509" /note="Type VI protein secretion system component Hcp (secreted cytotoxin) [Intracellular trafficking, secretion, and vesicular transport]; Region: Hcp; COG3157" /db_xref="CDD:442391" gene 4764340..4765078 /locus_tag="STM4510" /db_xref="GeneID:1256036" regulatory 4764340..4764345 /regulatory_class="ribosome_binding_site" /locus_tag="STM4510" /note="putative RBS for STM4510; RegulonDB:STMS1H004380" CDS 4764344..4765078 /locus_tag="STM4510" /note="similar to E. coli putative resistance proteins (AAC75879.1); Blastp hit to AAC75879.1 (230 aa), 29% identity in aa 1 - 218" /codon_start=1 /transl_table=11 /product="putative aspartate racemase" /protein_id="NP_463369.1" /db_xref="GeneID:1256036" /translation="MKHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIP DIPDRTACLLSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMI SILDATLGDIPPSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMQAIY TLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASL VRAAIRWYESWPDTRASLTGEQRLTA" misc_feature 4764344..4765021 /locus_tag="STM4510" /note="Amino acid racemase YgeA [Cell wall/membrane/envelope biogenesis]; Region: RacX; COG1794" /db_xref="CDD:441399" gene complement(4765084..4766006) /gene="yjiE" /locus_tag="STM4511" /db_xref="GeneID:1256037" CDS complement(4765084..4765992) /gene="yjiE" /locus_tag="STM4511" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC77283.1); Blastp hit to AAC77283.1 (303 aa), 81% identity in aa 1 - 302" /codon_start=1 /transl_table=11 /product="putative LysR family transcriptional regulator" /protein_id="NP_463370.1" /db_xref="GeneID:1256037" /translation="MDVTGAGLHNIETKWLYDFLTLEKCRNFSQAAIIRNVSQPAFSR RIRALEHAVGVELFNRQVSPLQLSEQGKIFHSQVRHLLQQLESNLTELRGGSDYTLRK IKIAAAHSLSLGLLPTIVKQMPTQFTYAVEAIDVDQAVDMLREGQSDFIFSYHDENLQ QAPFDNIRLFESRLFPVCANNGRGEPRYTLEQPHFPLLNYSQNSYMGRLINRTLTRHA ELSFSTFFVSSMSELLKQVAMDGCGIAWLPEYAIRQEITDGRLIVLDADELVIPIQAY AYRMNTRMSQVAETFWRDLRGLQAAL" misc_feature complement(4765087..4765992) /gene="yjiE" /locus_tag="STM4511" /note="hypochlorite stress DNA-binding transcriptional regulator HypT; Region: PRK10082" /db_xref="CDD:182228" regulatory complement(4766001..4766006) /regulatory_class="ribosome_binding_site" /gene="yjiE" /locus_tag="STM4511" /note="putative RBS for yjiE; RegulonDB:STMS1H004381" gene complement(4766111..4767294) /gene="iadA" /locus_tag="STM4512" /db_xref="GeneID:1256038" CDS complement(4766111..4767283) /gene="iadA" /locus_tag="STM4512" /EC_number="3.4.19.5" /note="similar to E. coli isoaspartyl dipeptidase (AAC77284.1); Blastp hit to AAC77284.1 (390 aa), 81% identity in aa 1 - 390" /codon_start=1 /transl_table=11 /product="isoaspartyl dipeptidase" /protein_id="NP_463371.1" /db_xref="GeneID:1256038" /translation="MPDLSAAEFTLLQGAHLFAPEDRGICDVLLANGKIIAVGAGIPG DIVPDCTVINLSGRMLCPGFIDQHVHLIGGGGEAGPTTRTPEVSLSRLTEAGITTVVG LLGTDSVSRHPASLLAKTRALNEEGITAWMLTGAYHVPSPTITGSVEKDVALIDRVIG VKCAVSDHRSAAPSGNQLASMAAESRVGGLLGGKPGVSVFHMGSSKKGLQPLYDILEN SDVPIGKLLPTHVNRSESLFEQALAFALKGGVIDITTSIPDPVAPAEGIARAVKAGVP LSRVTLSSDGNGSQPLFDAAGNLTGIGVAGFESLLETLQTLVNHYGFSLANALRPLTT SVAAFLSLDGKGEIRPGNDADLLVFSADLRIEQVYARGKRMVNEGKACVKGTFEPA" misc_feature complement(4766120..4767259) /gene="iadA" /locus_tag="STM4512" /note="Superfamily of metallo-dependent hydrolases (also called amidohydrolase superfamily) is a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site. The vast majority of the members have a...; Region: metallo-dependent_hydrolases; cl00281" /db_xref="CDD:469705" misc_feature complement(order(4766429..4766431,4766594..4766596, 4766681..4766683,4767074..4767076,4767080..4767082)) /gene="iadA" /locus_tag="STM4512" /note="active site" /db_xref="CDD:238617" regulatory complement(4767289..4767294) /regulatory_class="ribosome_binding_site" /gene="iadA" /locus_tag="STM4512" /note="putative RBS for iadA; RegulonDB:STMS1H004382" gene complement(4767296..4767770) /gene="yjiG" /locus_tag="STM4513" /db_xref="GeneID:1256039" CDS complement(4767296..4767757) /gene="yjiG" /locus_tag="STM4513" /note="similar to E. coli orf, hypothetical protein (AAC77285.1); Blastp hit to AAC77285.1 (153 aa), 96% identity in aa 1 - 153" /codon_start=1 /transl_table=11 /product="putative permease" /protein_id="NP_463372.1" /db_xref="GeneID:1256039" /translation="MTTQVRKNVMDMFIDGARRGFTIATTNLLPNVVMAFVIIQALKI TGLLDWVGHICQPVMALWGLPGEAATVLLASLMSMGGAVGVAASLATAGALSGHDVTV LLPAIYLMGNPVQNVGRCLGTAEVNAKYYPHIIAVCAINALLSIWVMQLIV" misc_feature complement(4767299..4767751) /gene="yjiG" /locus_tag="STM4513" /note="hypothetical protein; Provisional; Region: PRK10519" /db_xref="CDD:182513" gene complement(4767754..4768638) /gene="yjiH" /locus_tag="STM4514" /db_xref="GeneID:1256040" CDS complement(4767754..4768638) /gene="yjiH" /locus_tag="STM4514" /note="similar to E. coli orf, hypothetical protein (AAC77286.1); Blastp hit to AAC77286.1 (231 aa), 84% identity in aa 2 - 231" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463373.3" /db_xref="GeneID:1256040" /translation="MLFYLALYRPRFPAPPAVARMVIFRAAMQETHSTIHTCILSLPL WLIRSFCFGLFGLWLQPTHHQKNSGIAMAQQVDGAAMPLDTEKVGIKGYLAFFLTIIF FSGVFSGSEGWWRVFDFTVLNGSFGHVTGTQTFRGAGGTGAKDGFLFALELAPSVILS LGIIAITDGLGGLRAAQQLMTPILKPLLGIPGICSLALIANLQNTDAAAGMTKELAQE GEITERDKVIFAAWQTSGSAIITNYFSSGVAVFAFLGTSVIIPLVVILLFKFIGANLL RIWINIEERRHPAQGAQS" regulatory complement(4767765..4767770) /regulatory_class="ribosome_binding_site" /gene="yjiG" /locus_tag="STM4513" /note="putative RBS for yjiG; RegulonDB:STMS1H004383" gene complement(4769298..4770492) /gene="yjiJ" /locus_tag="STM4515" /db_xref="GeneID:1256041" CDS complement(4769298..4770482) /gene="yjiJ" /locus_tag="STM4515" /note="similar to E. coli putative transport protein (AAC77288.1); Blastp hit to AAC77288.1 (392 aa), 72% identity in aa 3 - 386" /codon_start=1 /transl_table=11 /product="putative sugar transporter" /protein_id="NP_463374.1" /db_xref="GeneID:1256041" /translation="MVHAQSASPRHPIFTALFGMMVLTLGMGVGRFLYTPMLPVMLAE KQLTFNQLSWIASANYAGYLAGSLLFSFGLFHLPSRLRPMLLASAVATGILILAMAIF TQPAVVMLVRFLAGVASAGMMIFGSMIVLHHTRHPFVIAALFSGVGAGIALGNEYVIG GLHYALSAHSLWLGAGALAGILLLIVAILIPPRAHALPPAPLARIENQPMPWWQLALL YGFAGFGYIIVATYLPLMAKSAGSPLLTAHLWSLVGLAIIPGCFGWLWAAKHWGVLPC LTANLLIQSACVLLSLASDSLLLLILSSIGFGATFMGTTSLVMPLARQLSAPGNINLL GLVTLTYGIGQILGPLAASLSGNGASAIINATLCGAAALFFAALISAVQQIKQKRFVI RE" misc_feature complement(4769376..4770416) /gene="yjiJ" /locus_tag="STM4515" /note="Uncharacterized MFS-type transporter YbfB; Region: MFS_4; pfam06779" /db_xref="CDD:399632" regulatory complement(4770487..4770492) /regulatory_class="ribosome_binding_site" /gene="yjiJ" /locus_tag="STM4515" /note="putative RBS for yjiJ; RegulonDB:STMS1H004384" gene complement(4770702..4771993) /gene="yjiN" /locus_tag="STM4516" /db_xref="GeneID:1256042" CDS complement(4770702..4771973) /gene="yjiN" /locus_tag="STM4516" /note="similar to E. coli orf, hypothetical protein (AAC77292.1); Blastp hit to AAC77292.1 (426 aa), 89% identity in aa 1 - 423" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463375.1" /db_xref="GeneID:1256042" /translation="MNKIAELKRAKRLALSLLLIAAATFVTTLFLPPSFWVLGAKAIA EAAMVGALADWFAVVALFRRIPIPFISRHTAIIPRNKDRIGENLGQFVQEKFLDTQSL IALIRRHEPALLIGNWFSQPDNASRVGQHLLQIMSGFLELTDDARIQRLLKRAVHKAI DKVDLSGTSALMLESMTKNDRHQVLLDTLIAQLIALLQRDSSRTFIARQIIRWLETEH PLKAKILPTEWLGEHSAELVSDAVNSLLDDISHDRAHQIRHAFDRATYKLIDKLKHDP EMAARAENIKSYLKEDEAFNRYLGEIWADLRQWLKTDINAEDSKVKQRIAHAGQWFGE TLIADDALRASLNGHLEQAAHRVAPEFAAFLTRHISDTVKGWDARDMSQQIELNIGKD LQFIRVNGTLVGGAIGLVLYLLSQIPALLSI" misc_feature complement(4770714..4771901) /gene="yjiN" /locus_tag="STM4516" /note="Uncharacterized membrane-anchored protein YjiN, DUF445 family [Function unknown]; Region: YjiN; COG2733" /db_xref="CDD:442039" regulatory complement(4771988..4771993) /regulatory_class="ribosome_binding_site" /gene="yjiN" /locus_tag="STM4516" /note="putative RBS for yjiN; RegulonDB:STMS1H004385" gene complement(4772060..4773317) /gene="yjiO" /locus_tag="STM4517" /db_xref="GeneID:1256043" CDS complement(4772060..4773301) /gene="yjiO" /locus_tag="STM4517" /note="similar to E. coli putative transport protein (AAC77293.1); Blastp hit to AAC77293.1 (410 aa), 86% identity in aa 3 - 410" /codon_start=1 /transl_table=11 /product="putative MFS family transport protein" /protein_id="NP_463376.1" /db_xref="GeneID:1256043" /translation="MQRIIQFFSQRATTLFFPMALILYDFAAYLTTDLIQPGIINVVR DFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLIAGALIFTLACAATLLTT SMTQFLVARFVQGTSICFIATVGYVTVQEAFGQTKAIKLMAIITSIVLVAPVIGPLSG AALMHFVHWKVLFGIIAVMGLLALCGLLLAMPETVQRGAVPFSAVSVLRDFRNVFRNP IFLTGAATLSLSYIPMMSWVAVSPVILIDAGGMSTSQFAWAQVPVFGAVIVANMIVVR LVKDPTRPRFIWRAVPIQLSGLATLLLGNLLLPHVWLWSVLGTSLYAFGIGMIFPTLF RFTLFSNNLPKGTVSASLNMVILTVMAVSVEVGRWLWFHGGRLPFHLLAAVAGVIVVF TLATLLQRVRQHEAAELAAEK" misc_feature complement(4772063..4773301) /gene="yjiO" /locus_tag="STM4517" /note="multidrug efflux MFS transporter MdtM; Region: PRK15403" /db_xref="CDD:237958" regulatory complement(4773312..4773317) /regulatory_class="ribosome_binding_site" /gene="yjiO" /locus_tag="STM4517" /note="putative RBS for yjiO; RegulonDB:STMS1H004386" gene 4773774..4774295 /locus_tag="STM4518" /db_xref="GeneID:1256044" regulatory 4773774..4773779 /regulatory_class="ribosome_binding_site" /locus_tag="STM4518" /note="putative RBS for STM4518; RegulonDB:STMS1H004387" CDS 4773780..4774295 /locus_tag="STM4518" /note="similar to E. coli orf, hypothetical protein (AAC75304.1); Blastp hit to AAC75304.1 (299 aa), 45% identity in aa 187 - 277, 73% identity in aa 1 - 42, 36% identity in aa 216 - 295" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463377.1" /db_xref="GeneID:1256044" /translation="MKKSTTSTPHDAVFKTFLRHPETARDFMEIHLPVSLRQLCDLLG LVERIASLLVTGCANDRQLKALFNYLMIQHGHTPRFTTFIRDVVGHVPHTKERLMTLI ERIRAADRRKGERQGRQVGLEEGLEKGLEKGQRVAALRIAKQMLADGLDRETVQRFTG LTAEELQDVSH" misc_feature 4773780..4774292 /locus_tag="STM4518" /note="ISNCY family transposase; Region: PRK09956" /db_xref="CDD:182167" gene 4774469..4775846 /locus_tag="STM4519" /db_xref="GeneID:1256045" regulatory 4774469..4774474 /regulatory_class="ribosome_binding_site" /locus_tag="STM4519" /note="putative RBS for STM4519; RegulonDB:STMS1H004388" CDS 4774476..4775846 /locus_tag="STM4519" /EC_number="1.2.1.16" /note="similar to E. coli putative aldehyde dehydrogenase (AAC74598.1); Blastp hit to AAC74598.1 (470 aa), 42% identity in aa 19 - 465" /codon_start=1 /transl_table=11 /product="putative NAD-dependent aldehyde dehydrogenase" /protein_id="NP_463378.1" /db_xref="GeneID:1256045" /translation="MAYQTVNPANNQLIKEYPPHTDADIEAALQKADALYHSDWSKGE IDQRLPVLHKLADLIDSRVEELAKIASQEMGKLIEQSRGEVKLCAQIARYYADKAKQF LAPVPYKTEFGDAWVEHHPIGVIMAVEPWNFPYYQLMRVLAPNLAAGNPVLAKHASIV PHCAETFAHLVREAGAPEGAWTNLFISSDQVANIIADPRVQGAALTGSEKAGSAVAAQ AAKHIKKSTLELGGNDVFVVLDDADLEKAVKIGVQARLTNAGQVCTAAKRFILHEKIA DQFLSQFTEAFRKVKVGDQMDASTELGPLSSKDALETLTRQVEEAVKNGATLHVGGKP LESKGNFFEPTILTHITRDNPAYFEEFFGPVAQMYVVKDDDEAVKLANDSHYGLGGAV FSQNIERAKRMASRIETGMVYINWLTDTAAELPFGGVKRSGFGRELSDLGIKEFVNQK LVVVRR" misc_feature 4774548..4775837 /locus_tag="STM4519" /note="Mycobacterium tuberculosis succinate-semialdehyde dehydrogenase 1-like; Region: ALDH_SSADH1_GabD1; cd07100" /db_xref="CDD:143418" misc_feature order(4774857..4774871,4774893..4774895,4774938..4774940, 4774944..4774949,4775088..4775099,4775106..4775108, 4775115..4775120,4775160..4775168,4775262..4775264, 4775553..4775555,4775559..4775561,4775637..4775639, 4775751..4775753) /locus_tag="STM4519" /note="NAD(P) binding site [chemical binding]; other site" /db_xref="CDD:143418" misc_feature order(4774869..4774871,4775160..4775162,4775253..4775255, 4775262..4775264) /locus_tag="STM4519" /note="catalytic residues [active]" /db_xref="CDD:143418" gene complement(4775941..4776084) /locus_tag="STM4520" /db_xref="GeneID:1256046" CDS complement(4775941..4776084) /locus_tag="STM4520" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463379.1" /db_xref="GeneID:1256046" /translation="MVVWGGSRKIPYRPPHRTENAGIMNVCTNNTGIKSTVSATWINK EGN" gene 4776039..4776215 /gene="yjiS" /locus_tag="STM4521" /db_xref="GeneID:1256047" regulatory 4776039..4776044 /regulatory_class="ribosome_binding_site" /gene="yjiS" /locus_tag="STM4521" /note="putative RBS for yjiS; RegulonDB:STMS1H004389" CDS 4776051..4776215 /gene="yjiS" /locus_tag="STM4521" /note="similar to E. coli orf, hypothetical protein (AAC77297.1); Blastp hit to AAC77297.1 (54 aa), 55% identity in aa 1 - 54" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463380.1" /db_xref="GeneID:1256047" /translation="MEFYENRPRQPFIGFVQLRRALKRWWLRKRACQALRRMSDEQLR DIGLERKDVE" misc_feature 4776093..4776212 /gene="yjiS" /locus_tag="STM4521" /note="Uncharacterized conserved protein YjiS, DUF1127 family [Function unknown]; Region: YjiS; COG5457" /db_xref="CDD:444208" gene complement(4776290..4776998) /locus_tag="STM4522" /db_xref="GeneID:1256048" CDS complement(4776290..4776991) /locus_tag="STM4522" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463381.1" /db_xref="GeneID:1256048" /translation="MRLKVKENITLWRNEGLIAYVALGFLCTFFMEVNALLPYYLQQS IFFETLMSYMAFNTLFSLALSEIFFAMLVVICHNTKLEKITNSILQELHKRIMQGSFI ISFLCFGIFLFCVMAFCIDSLTINNNYYGKHVINFACPFVLFLSFPYLIHKGITILCT LLKAFPKHKIHAAIIILLIIAAAIIIPGIFNKKEKMTITIDKEKYHAIEQKTKIKPEK YIEKKINDININDIK" regulatory complement(4776993..4776998) /regulatory_class="ribosome_binding_site" /locus_tag="STM4522" /note="putative RBS for STM4522; RegulonDB:STMS1H004390" gene complement(4777065..4777412) /gene="yjiW" /locus_tag="STM4523" /db_xref="GeneID:1256049" CDS complement(4777065..4777397) /gene="yjiW" /locus_tag="STM4523" /note="LexA regulated; similar to E. coli orf, hypothetical protein (AAC77303.1); Blastp hit to AAC77303.1 (132 aa), 79% identity in aa 20 - 129" /codon_start=1 /transl_table=11 /product="putative SOS response protein" /protein_id="NP_463382.1" /db_xref="GeneID:1256049" /translation="MTTVHSIADPCDPEVSPTNNRHLTVSYASRYPDYTRIPALTMKG QWLEAAGFATGTEVDVRVMNGCIVLTAQQPQPEESELMQSLRQVSKLSARKQKQVQAF IDVMAGSK" misc_feature complement(4777068..4777397) /gene="yjiW" /locus_tag="STM4523" /note="endoribonuclease SymE; Provisional; Region: PRK13605" /db_xref="CDD:237442" regulatory complement(4777407..4777412) /regulatory_class="ribosome_binding_site" /gene="yjiW" /locus_tag="STM4523" /note="putative RBS for yjiW; RegulonDB:STMS1H004391" gene complement(4777624..4779044) /gene="hsdS" /locus_tag="STM4524" /db_xref="GeneID:1256050" CDS complement(4777624..4779033) /gene="hsdS" /locus_tag="STM4524" /EC_number="3.1.21.3" /note="type I restriction enzyme STYSJI specificity protein. (SW:T1S_SALTY)" /codon_start=1 /transl_table=11 /product="specificity determinant for hsdM and hsdR" /protein_id="NP_463383.1" /db_xref="GeneID:1256050" /translation="MSGGKLPEGWATSTINEMCNLNPKLKLDDDLDVGFMPMAGVPTT YLGKCNFETKKWSEVKKGFTQFQNDDVIFAKITPCFENGKAVVIKEFPNGYGAGSTEY YVLRSINGLINPHWLFALVKTKDFLTNGALNMSGSVGHKRVTKEFLENYGVPVPPLAE QKVIAEKLDTLLAQVDSTKARLEQIPQILKRFRQSVIVAAVNGQLTKELHKKNKFKLT ELNISIPSLWKISEIGQFADVKGGKRLPKGESLIAENTGFPYIRAGQLKNGTVLPEGQ LYLEEYIQKSISRYTVSSGDLYITIVGACIGDAGIIPDVYNNANLTENAAKICNLNEN IFNRFLSLWLRSSYLQDIINSEIKSGAQGKLALARIKSLPLILPPLQEQHEIVRRVEQ LFAYADTIEKQVNNALTRVNSLTQSILAKAFRGELTAQWRAENPELISGENSAAALLE KIKAERAASGGKKTSRKKA" misc_feature complement(4777627..4779033) /gene="hsdS" /locus_tag="STM4524" /note="type I restriction-modification system specificity subunit; Region: PRK09737" /db_xref="CDD:236619" gene complement(4779030..4780630) /gene="hsdM" /locus_tag="STM4525" /db_xref="GeneID:1256051" CDS complement(4779030..4780619) /gene="hsdM" /locus_tag="STM4525" /EC_number="2.1.1.72" /note="type I restriction enzyme STYSJI Mm protein. (SW:T1M_SALTY)" /codon_start=1 /transl_table=11 /product="DNA methylase M, host modification" /protein_id="NP_463384.1" /db_xref="GeneID:1256051" /translation="MNNNDLVAKLWKLCDNLRDGGVSYQNYVNELASLLFLKMCKETG QEADYLPEGYRWDDLKSRIGQDQMQFYRNLLVQLGSDEKKLVQAVFHNVSTTIEQPKQ LTELVSYMDALDWYNGNHGKSRDDFGDMYEGLLQKNANETKSGAGQYFTPRPLIKTII HLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELV PGTRRLALMNCLLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTN ITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVLFEGGKGTDIRRDLMDKCHL HTILRLPTGIFYAQGVKTNVLFFTKGTVTNPHQDKNCTDDVWVYDLRTNMPSFGKRTP FTEQHLQPFETVYGEDPHGLSPREEGEWSFNAEESEVADSEENKNTDQHQATSRWRKF SREWIRSAKSDSLDISWLKDKDSIDADSLPEPDVLAAEAMGELVQALGELDALMRELG AGDEADAQRQLLNEAFGEVKA" misc_feature complement(4780296..4780604) /gene="hsdM" /locus_tag="STM4525" /note="HsdM N-terminal domain; Region: HsdM_N; pfam12161" /db_xref="CDD:463478" misc_feature complement(4779273..4780253) /gene="hsdM" /locus_tag="STM4525" /note="N-6 DNA Methylase; Region: N6_Mtase; pfam02384" /db_xref="CDD:426749" regulatory complement(4779039..4779044) /regulatory_class="ribosome_binding_site" /gene="hsdS" /locus_tag="STM4524" /note="putative RBS for hsdS; RegulonDB:STMS1H004392" regulatory complement(4780625..4780630) /regulatory_class="ribosome_binding_site" /gene="hsdM" /locus_tag="STM4525" /note="putative RBS for hsdM; RegulonDB:STMS1H004393" gene complement(4780777..4784306) /gene="hsdR" /locus_tag="STM4526" /db_xref="GeneID:1256052" CDS complement(4780777..4784286) /gene="hsdR" /locus_tag="STM4526" /EC_number="3.1.21.3" /note="host restriction; similar to E. coli host restriction; endonuclease R (AAC77306.1); Blastp hit to AAC77306.1 (1188 aa), 91% identity in aa 20 - 1188" /codon_start=1 /transl_table=11 /product="endonuclease R" /protein_id="NP_463385.1" /db_xref="GeneID:1256052" /translation="MNKSNFDFLKGVNDFIYAIACAAENNYPDDPNTTLIKMRMFGEA TAKHLGQLLDIPACENQHDLLRELGKIAFIDDSILSVFHKLRRIGNLAVHEFHNDLDD AQMCLRLGFRLSVWYYRLVTKDYDFPVPMFVLPEHGENLYHQEVLTLKQQLERQAQEK VQSQAELEAQQQRLVALNGYIAILEGKQQETEAQTKARLAALEAQLAAKDAELAKQTE QERKAYHKEITDQAVKRTLELNEEESRFLIDAQLRKAGWQADSKTLRFAKGARPEPGV NKAIAEWPTGTDETGKTGFADYVLFIGLKPIAVVEAKRKNTDVSSKLNESYRYSKYFD NGFLRDTLLEHYAPDEVHDAVPEYEISWQDTSGKQRFKIPFCYSTNGREYRAAMKTKS GIWYRDVRHTTNMSKALPEWHRPEELLDMLGSDPQKQNQWFAENPGMSELGLRYYQED AVRAVEQAIVNGQQHILLAMATGTGKTRTAIALMFRLIQSQRFKRVLFLVDRRSLGEQ ALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVGR YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHT VDIFGEPVYRYTYRTAVIDGYLIDQDPPIQIVTRNAQDGVYLSEGEQVERLNPQGELI NDTLADDQDFEVADFNRGLVIPAFNRAVCGELTKYLDPTGQQKTLVFCVTNAHADMVV DELRSAFKKKYPQLEHDAIIKITGDADKDAKKVQSMIVRFNKERLPNIVVTVDLLTTG VDIPSICNIVFLRKVKSRILYEQMKGRATRLCPSVGKTSFKIFDCVDIYSSLESVDTM RPVVVRPQVELQTLVNEITDSETYKTIEADGRSFAEHSHEQLVAKLQRIIGLAIYNRD RSEAVDKQVRRLDELCLDAAGVNFGGLASRLREKGPHWSAEIFNKLPGFIARLERLTT DINALREAPIFLDIDDEVVSVKSLYGDYDTPQDFLEAFDALVQHAPNAQPALQAVINR PRDLTRKGLVELQEWFDRQHFEESSLRSAWKATRNEDIAARLIGHIRRAAVGDALKPF DERVDHALARIKAENDWSDEQINWLDRLAQALKEKVVLDDDVFKTGNFHRRGGKPMLQ RTFDDNLDSVLDKFSDYIWDELA" misc_feature complement(4780780..4784286) /gene="hsdR" /locus_tag="STM4526" /note="type I restriction enzyme EcoKI subunit R; Provisional; Region: hsdR; PRK11448" /db_xref="CDD:236912" regulatory complement(4784301..4784306) /regulatory_class="ribosome_binding_site" /gene="hsdR" /locus_tag="STM4526" /note="putative RBS for hsdR; RegulonDB:STMS1H004394" gene 4784471..4785398 /gene="mrr" /locus_tag="STM4527" /db_xref="GeneID:1256053" regulatory 4784471..4784476 /regulatory_class="ribosome_binding_site" /gene="mrr" /locus_tag="STM4527" /note="putative RBS for mrr; RegulonDB:STMS1H004395" CDS 4784484..4785398 /gene="mrr" /locus_tag="STM4527" /note="similar to E. coli restriction of methylated adenine (AAC77307.1); Blastp hit to AAC77307.1 (304 aa), 77% identity in aa 1 - 304" /codon_start=1 /transl_table=11 /product="restriction of methylated adenine" /protein_id="NP_463386.1" /db_xref="GeneID:1256053" /translation="MAVPTYDKFIEPVLRFLATRPEGALVREVREAAAEMLGLDEQQR AEVITSGQLTYQNRTGWAHDRLKRAGLSQSLSRGKWCLTPAGMSWVASHPQPMTELEV SHFACDFNGVKLSKLADAVALDPQPESIEDDELARSSPDDRLEQALNEIRESVAEELL ENLLQVSPARFEVIVLDVLHRLGYGGHRGDLQRVGGTGDGGIDGIISLDKLGLEKVYV QAKRWKGTVGSAEVRGFYGALPEQKVKRGVFITTSGFTAHARDYANKVEGLVLVDGDR LVHLMIDNDIGVSSRLLKLPKLDMDYFE" misc_feature 4784517..4784759 /gene="mrr" /locus_tag="STM4527" /note="Mrr N-terminal domain; Region: Mrr_N; pfam14338" /db_xref="CDD:433880" misc_feature 4784742..>4784942 /gene="mrr" /locus_tag="STM4527" /note="calponin homology (CH) domain superfamily; Region: CH_SF; cl00030" /db_xref="CDD:469584" misc_feature 4784919..4785395 /gene="mrr" /locus_tag="STM4527" /note="Restriction endonuclease Mrr [Defense mechanisms]; Region: Mrr; COG1715" /db_xref="CDD:441321" gene 4785662..4785954 /locus_tag="STM4528" /db_xref="GeneID:1256054" regulatory 4785662..4785667 /regulatory_class="ribosome_binding_site" /locus_tag="STM4528" /note="putative RBS for STM4528; RegulonDB:STMS1H004396" CDS 4785667..4785954 /locus_tag="STM4528" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463387.1" /db_xref="GeneID:1256054" /translation="MPMEFEWDANKAKSNLRKHGVRFEDAVLVFDDPRHLSRQERYEN GEYRWQTLGLVHGIVVILVAHSVRFESGFEVIRIISARKADRKERNRYEHG" misc_feature 4785673..4785951 /locus_tag="STM4528" /note="Uncharacterized conserved protein, DUF497 family [Function unknown]; Region: COG2929" /db_xref="CDD:442173" gene 4785934..4786243 /locus_tag="STM4529" /db_xref="GeneID:1256055" regulatory 4785934..4785939 /regulatory_class="ribosome_binding_site" /locus_tag="STM4528" /note="putative RBS for STM4529; RegulonDB:STMS1H004397" CDS 4785941..4786243 /locus_tag="STM4529" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463388.1" /db_xref="GeneID:1256055" /translation="MSMVKHKRGNASALSAQHEAELKALAKKSDDEIDYSDIPASEDG QWSEAVRGKFFRPLKTQASVRIDADVMEWLKRPGKGYQTRLNAILREAMLREQNKK" misc_feature 4785983..4786219 /locus_tag="STM4529" /note="Uncharacterized conserved protein, DUF4415 family [Function unknown]; Region: COG3514" /db_xref="CDD:442736" gene complement(4786318..4787285) /gene="yjiA" /locus_tag="STM4530" /db_xref="GeneID:1256056" CDS complement(4786318..4787274) /gene="yjiA" /locus_tag="STM4530" /note="similar to E. coli orf, hypothetical protein (AAC77308.1); Blastp hit to AAC77308.1 (284 aa), 90% identity in aa 1 - 284" /codon_start=1 /transl_table=11 /product="putative cobalamin synthesis protein" /protein_id="NP_463389.1" /db_xref="GeneID:1256056" /translation="MTPIAVTLLTGFLGAGKTTLLRHILNEQHGFKIAVIENEFGEVS VDDQLIGDRATQIKTLTNGCICCTRSNELEDALLDLLDSRDRGDIAFDRLVIECTGMA DPGPIIQTFFSHDVLCERYLLDGVIALVDAVHANEQMNQFTIAQSQIGYADRILLTKT DVAGDSEKLRERLARINARAPVYTVVHGDIDLSQLFNTSGFMLEENVLASQPRFHFIA DKQNDVSSIVVELDYPVDISEVSRVMENLLLESADKLLRYKGMLWIDGEPNRLLFQGV QRLYSADWDRPWGDETPHSTLVFIGIQLPEDEIRAAFVGLRK" misc_feature complement(4786321..4787274) /gene="yjiA" /locus_tag="STM4530" /note="putative GTP-binding protein YjiA; Provisional; Region: PRK11537" /db_xref="CDD:183183" regulatory complement(4787280..4787285) /regulatory_class="ribosome_binding_site" /gene="yjiA" /locus_tag="STM4530" /note="putative RBS for yjiA; RegulonDB:STMS1H004398" gene complement(4787285..4787500) /gene="yjiX" /locus_tag="STM4531" /db_xref="GeneID:1256057" CDS complement(4787285..4787488) /gene="yjiX" /locus_tag="STM4531" /note="similar to E. coli orf, hypothetical protein (AAC77309.1); Blastp hit to AAC77309.1 (67 aa), 94% identity in aa 1 - 67" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463390.1" /db_xref="GeneID:1256057" /translation="MFDTLGQAKKYLGQAAKMLIGIPDYDNYVEHMKTNHPDKPYMTY EEFFRERQQARYGGDGKGGMRCC" misc_feature complement(4787288..4787488) /gene="yjiX" /locus_tag="STM4531" /note="Uncharacterized short protein YbdD, DUF466 family [Function unknown]; Region: YbdD; COG2879" /db_xref="CDD:442126" regulatory complement(4787495..4787500) /regulatory_class="ribosome_binding_site" /gene="yjiX" /locus_tag="STM4531" /note="putative RBS for yjiX; RegulonDB:STMS1H004399" gene complement(4787583..4789744) /gene="yjiY" /locus_tag="STM4532" /db_xref="GeneID:1256058" CDS complement(4787583..4789733) /gene="yjiY" /locus_tag="STM4532" /note="similar to E. coli putative carbon starvation protein (AAC77310.1); Blastp hit to AAC77310.1 (721 aa), 96% identity in aa 6 - 721" /codon_start=1 /transl_table=11 /product="putative carbon starvation protein" /protein_id="NP_463391.1" /db_xref="GeneID:1256058" /translation="MDTKKIFKHIPWVILGIIGAFCLSVVALRRGEHVSALWIVVASV SVYLVAYRYYSLYIAQKVMKLDPTRATPAVINNDGLNYVPTNRYVLFGHHFAAIAGAG PLVGPVLAAQMGYLPGTLWLLAGVVLAGAVQDFMVLFISSRRNGASLGEMIKEEMGTV PGTIALFGCFLIMIIILAVLALIVVKALAESPWGVFTVCSTVPIALFMGIYMRFLRPG RVGEVSVIGIVLLVASIYFGGVIAHDPYWGPALTFKDTTITFALIGYAFVSALLPVWL ILAPRDYLATFLKIGVIVGLALGIVILNPELKMPALTQYVDGTGPLWKGALFPFLFIT IACGAVSGFHALISSGTTPKLLACETDARFIGYGAMLMESFVAVMALVAASIIEPGLY FAMNTPPAGLGITMPNLHEMGGENAPLIMAQLKDVTAHAAATVSSWGFVISPEQILQT AKDIGEPSVLNRAGGAPTLAVGIAHVFHKVLPMADMGFWYHFGILFEALFILTALDAG TRSGRFMLQDLLGNFVPFLKKTDSLVAGIIGTAGCVGLWGYLLYQGVVDPLGGVKSLW PLFGISNQMLAAVALVLSTVVLIKMQRTKYIWVTVIPAVWLLICTTWALGLKLFSANP QMEGFFYMANLYKEKIANGANLTEQQIANMNHIVVNNYTNAGLSILFLVVVYSIIFYG FTTWMKVRNSDKRTDKETPYVPVPEGGVKISSHH" misc_feature complement(4787586..4789712) /gene="yjiY" /locus_tag="STM4532" /note="carbon starvation protein CstA; Region: PRK15015" /db_xref="CDD:184976" regulatory complement(4789739..4789744) /regulatory_class="ribosome_binding_site" /gene="yjiY" /locus_tag="STM4532" /note="putative RBS for yjiY; RegulonDB:STMS1H004400" gene 4790085..4791761 /gene="tsr" /locus_tag="STM4533" /db_xref="GeneID:1256059" regulatory 4790085..4790090 /regulatory_class="ribosome_binding_site" /gene="tsr" /locus_tag="STM4533" /note="putative RBS for tsr; RegulonDB:STMS1H004401" CDS 4790100..4791761 /gene="tsr" /locus_tag="STM4533" /note="serine sensor receptor; similar to E. coli methyl-accepting chemotaxis protein I, serine sensor receptor (AAC77311.1); Blastp hit to AAC77311.1 (551 aa), 86% identity in aa 1 - 551" /codon_start=1 /transl_table=11 /product="methyl-accepting chemotaxis protein I" /protein_id="NP_463392.1" /db_xref="GeneID:1256059" /translation="MLKRIKIVTSLLLVLALFGLLQLTSGGLFFNSLKNDKENFTVLQ TIRQQQSALNATWVELLQTRNTLNRAGIRWMMDQSNIGSGATVAELMQGATNTLKLTE KNWEQYEALPRDPRQSEAAFLEIKRTYDIYHGALAELIQLLGAGKINEFFDQPTQSYQ DAFEKQYMAYMQQNDRLYDIAVEDNNSSYNQAMWVLVSVLIAVLVVIIAVWFGIKLSL IAPMNRLIESIRHIASGDLVKRIDVEGSNEMGQLAENLRHMQSELMRTVGDVRNGANA IYSGASEIAMGNNDLSSRTEQQAASLEETAASMEQLTATVKQNAENARQASHLALSAS ETAQKGGKVVDNVVQTMRDIASSSQKIADIISVIDGIAFQTNILALNAAVEAARAGEQ GRGFAVVAGEVRNLAQRSAQAAREIKSLIEDSVSRVDVGSTLVESAGETMDEIVNAVT RVTDIMGEIASASDEQSRGIDQVGLAVAEMDRVTQQNASLVEESAAAAAALEEQASRL TQAVAVFRIHQQQQRAREVAAVKTPAAVSSPKAAVADGSDNWETF" misc_feature 4790100..4791758 /gene="tsr" /locus_tag="STM4533" /note="methyl-accepting chemotaxis protein; Region: PRK15041" /db_xref="CDD:185001" misc_feature order(4791009..4791014,4791021..4791026,4791033..4791035, 4791042..4791047,4791051..4791056,4791063..4791065, 4791072..4791077,4791084..4791086,4791093..4791098, 4791105..4791110,4791117..4791119,4791126..4791131, 4791135..4791140,4791150..4791152,4791156..4791161, 4791168..4791170,4791177..4791182,4791189..4791194, 4791201..4791203,4791210..4791212,4791219..4791224, 4791231..4791233,4791243..4791245,4791252..4791254, 4791273..4791275,4791285..4791287,4791294..4791296, 4791303..4791308,4791315..4791317,4791324..4791329, 4791336..4791341,4791345..4791350,4791357..4791362, 4791399..4791404,4791411..4791413,4791420..4791425, 4791432..4791434,4791441..4791446,4791450..4791455, 4791462..4791467,4791474..4791476,4791483..4791488, 4791495..4791497,4791504..4791509,4791513..4791518, 4791525..4791530,4791534..4791539,4791546..4791548, 4791555..4791560,4791567..4791569) /gene="tsr" /locus_tag="STM4533" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:206779" misc_feature 4791219..4791320 /gene="tsr" /locus_tag="STM4533" /note="putative CheW interface [polypeptide binding]; other site" /db_xref="CDD:206779" gene 4792078..4794850 /locus_tag="STM4534" /db_xref="GeneID:1256060" regulatory 4792078..4792083 /regulatory_class="ribosome_binding_site" /locus_tag="STM4534" /note="putative RBS for STM4534; RegulonDB:STMS1H004402" CDS 4792085..4794850 /locus_tag="STM4534" /note="similar to E. coli psp operon transcriptional activator (AAC74385.1); Blastp hit to AAC74385.1 (330 aa), 38% identity in aa 13 - 242" /codon_start=1 /transl_table=11 /product="putative NtrC family transcriptional regulator, ATPase domain protein" /protein_id="NP_463393.1" /db_xref="GeneID:1256060" /translation="MRKDALLAFLMNQTDFFDPENVSEVFTARYLAQRFNMQRNTASH YLNQLVAQGVLCKINTRPVYFLHKQAFSQQFFTLSRNEYASVAELLAHGEQECAPDDH FSLLIGHNESLKRPIEQLKTALFYPDGGLPLLMTGESGTGKSYLAQLMHEYAIAQALL SPDAPFISFNCAQYASNPELLAANLFGYVKGAFTGAQSDRPGAFEAADGGMLFLDEVH RLSAEGQEKLFTWLDRGEIYRVGDTAQGHPVSVRLVFATTEEIHSTFLTTFLRRIPIQ VNLPDLQHRSRQEKEALILLFFWTEAKKLSATLILKPRLLQILNQYVYRGNVGELKNV VKYAVATAWAKKPGQETVTVSLHDLPDAMLSALPSLNEPLADDTPVSISPDTNLTWLL RARDEMQGMIHDTQCHVLALYELVRSGKEGWETVQKRMGDEIETLFDRLIFTGDDNVH SQRLLLITSQVREEFYRLEKRFNMQLNGNCIYALSHYLIHRTALAPSRLNSEQIRQLD AFLAQKYPLLYSFCLQILETLGQKLDLEPRRIDMLLLALWLHKQGANNQKQVTHAVIL AHGYATASSIANVANRLLKNTIFESFDMPLDVTPEAIAQQVMRYLEEHPLASGLMILV DMGSLKAIHRHFDRALSTPVTIINNVSTSMALYVGERILQGHFIEEIARDIARDVPVE YQLYWPKSNKPRAILTTCATGIGVATNLCALLSASIPQALEIDVVACDYAMLASNKTQ EPVFMRYDVLAIVGTLDPHIASVPWISLDSLISGEGNHYLMRLFGSLTTPEQVAEINN LLLKNFSLRRVIESVTILDTSKVINHVEQFLLRYEHLAGVTVSNERKVALYVHISCLI ERLIRHAGITAWSGQQCPEQELNRLREAFSVIESNYSVKIPTAELGYIHNILTFETEL IEQDQQF" misc_feature 4792085..4794571 /locus_tag="STM4534" /note="Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription, Signal transduction mechanisms]; Region: PspF; COG1221" /db_xref="CDD:440834" misc_feature 4794560..4794796 /locus_tag="STM4534" /note="PRD domain; Region: PRD; pfam00874" /db_xref="CDD:459973" gene 4794946..4795374 /locus_tag="STM4535" /db_xref="GeneID:1256061" regulatory 4794946..4794951 /regulatory_class="ribosome_binding_site" /locus_tag="STM4535" /note="putative RBS for STM4535; RegulonDB:STMS1H004403" CDS 4794952..4795374 /locus_tag="STM4535" /note="similar to E. coli PTS enzyme IIAB, mannose-specific (AAC74887.1); Blastp hit to AAC74887.1 (323 aa), 22% identity in aa 6 - 127" /codon_start=1 /transl_table=11 /product="putative PTS permease" /protein_id="NP_463394.1" /db_xref="GeneID:1256061" /translation="MKRHYIFASHGTLASGVLNSVELILGKRSNVWTLCAYVEESVDL SQQVDTLIARIPPEDEIIALTDIFAGSVNNEFVRYLSRENFHLLAGINLPLVIDLFMS ENDGNTTHTIMTALADSKENIQYCNQTITSAMQSDKDF" misc_feature 4794958..4795317 /locus_tag="STM4535" /note="PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIA_man; cd00006" /db_xref="CDD:237978" misc_feature order(4794979..4794981,4795021..4795026,4795057..4795059, 4795162..4795164,4795252..4795254) /locus_tag="STM4535" /note="active pocket/dimerization site [active]" /db_xref="CDD:237978" misc_feature order(4794979..4794981,4795147..4795149,4795162..4795164) /locus_tag="STM4535" /note="active site" /db_xref="CDD:237978" misc_feature 4794979..4794981 /locus_tag="STM4535" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:237978" gene 4795382..4795850 /locus_tag="STM4536" /db_xref="GeneID:1256062" regulatory 4795382..4795387 /regulatory_class="ribosome_binding_site" /locus_tag="STM4536" /note="putative RBS for STM4536; RegulonDB:STMS1H004404" CDS 4795389..4795850 /locus_tag="STM4536" /note="similar to E. coli PTS enzyme IIAB, mannose-specific (AAC74887.1); Blastp hit to AAC74887.1 (323 aa), 30% identity in aa 162 - 311" /codon_start=1 /transl_table=11 /product="putative PTS permease" /protein_id="NP_463395.1" /db_xref="GeneID:1256062" /translation="MIVFLRVDHRLLHGQVAFSWTQYVGADCILIANDSVPNDDLRKT TIKMAKPPAVKLVIKNIADSIEAIKSGVTDKYKLFIVVESVADAYRLARELPDIKSIN LGGTKVREGSQNIAKAINLLADEMTQLRELAAGGVEIEIRLVPNDRKQLFA" misc_feature 4795392..4795844 /locus_tag="STM4536" /note="PTS_IIB, PTS system, Mannose/sorbose specific IIB subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family...; Region: PTS_IIB_man; cd00001" /db_xref="CDD:237975" misc_feature order(4795404..4795406,4795416..4795418,4795425..4795427) /locus_tag="STM4536" /note="active site" /db_xref="CDD:237975" misc_feature 4795425..4795427 /locus_tag="STM4536" /note="phosphorylation site [posttranslational modification]" /db_xref="CDD:237975" gene 4795869..4796655 /locus_tag="STM4537" /db_xref="GeneID:1256063" regulatory 4795869..4795874 /regulatory_class="ribosome_binding_site" /locus_tag="STM4537" /note="putative RBS for STM4537; RegulonDB:STMS1H004405" CDS 4795876..4796655 /locus_tag="STM4537" /note="similar to E. coli PTS system N-acetylgalactosamine-specific IIC component 1 (AAC76173.1); Blastp hit to AAC76173.1 (267 aa), 31% identity in aa 6 - 263" /codon_start=1 /transl_table=11 /product="putative PTS permease" /protein_id="NP_463396.1" /db_xref="GeneID:1256063" /translation="MVEALLLGLVAFIAQSEYALGTSLISRPIVTGLLTGLVLGDMET GIVMGATLELAFIGSFSVGASLPPDVVTGGILGVAFAINSGAGAETALLLGLPIATLA LIVKNIYNGMFIPLLCHKADAYAEVGDTRGIERMHLISGIGLSLMLGIIVTVSYLAGV NMVKGFLDAIPEFIKHGLSVATGIIPALGFAMLARLLINKKVAPYFFLGFVLMAYLKI PVTGIAILGAIVAVVMVNMPKFAASQPAPAQGASHDDEDDF" misc_feature 4795876..4796652 /locus_tag="STM4537" /note="Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IIC component [Carbohydrate transport and metabolism]; Region: ManY; COG3715" /db_xref="CDD:442929" gene 4796642..4797481 /locus_tag="STM4538" /db_xref="GeneID:1256064" regulatory 4796642..4796647 /regulatory_class="ribosome_binding_site" /locus_tag="STM4537" /note="putative RBS for STM4538; RegulonDB:STMS1H004406" CDS 4796645..4797481 /locus_tag="STM4538" /note="similar to E. coli PTS enzyme IID, mannose-specific (AAC74889.1); Blastp hit to AAC74889.1 (286 aa), 41% identity in aa 6 - 283" /codon_start=1 /transl_table=11 /product="putative PTS permease" /protein_id="NP_463397.1" /db_xref="GeneID:1256064" /translation="MISDKDRQQAETTGLVTARDLRRVFWRSFQMEFSWNYERQMNLA FVYTLIPVLKKLYSRKEDLAEALKRHLAFFNTTPHIVTLILGITVAMEEKNSQQKEMD ASSIDNVKASLMGPLAGIGDSFFWGTLRLIATGIGTSLALKGNILGPILFLLVFNVPH ILARWFFTRWGYVLGTGVLQRIQQSGMMESLTYGASIIGLMVVGAMTASMIDITIPIT FGTGEAKTHVQDIINDIMPCLLPLISFAIVYWLLGKKVKPLTIIGGIALVGIFGSWIG LF" misc_feature 4796672..4797478 /locus_tag="STM4538" /note="Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific IID component [Carbohydrate transport and metabolism]; Region: ManZ; COG3716" /db_xref="CDD:442930" gene 4797488..4798555 /locus_tag="STM4539" /db_xref="GeneID:1256065" regulatory 4797488..4797493 /regulatory_class="ribosome_binding_site" /locus_tag="STM4539" /note="putative RBS for STM4539; RegulonDB:STMS1H004407" CDS 4797494..4798555 /locus_tag="STM4539" /note="similar to E. coli L-glutamine:D-fructose-6-phosphate aminotransferase (AAC76752.1); Blastp hit to AAC76752.1 (609 aa), 24% identity in aa 262 - 596" /codon_start=1 /transl_table=11 /product="putative glucosamine-fructose-6-phosphate aminotransferase" /protein_id="NP_463398.1" /db_xref="GeneID:1256065" /translation="MSPTMLTYINEESDVLANIIRRHRQSLEEVSRFASQKTLRRILI LATGSSLNAAFCARYFFERCGISIDIKEPYTFSQYENSDPQADMVIAISQSGKSASTL EAMRKVQAQGRPVFALTADPQSPLGKASDYPLDILTGIESVGFVTRGFSATVLNLLLI ALLIARQQQRLTESQVEEYVAQLQRIAATLPLVIVRTEAFIHQHQAVLRNGTRFVATG YGALVGVAKELETKFTETVRVPSSGFELEAYMHGPYLEANAEHVMFFFEDRPDARSRA LREYMTPAVAKTFTLTLAKAAQDDQTLALDVAVDHHFSPLLLIVPVQLMAFHIASLKG IDLSVRIFDDFDRVLKSKI" misc_feature 4797518..4798501 /locus_tag="STM4539" /note="Fructoselysine-6-P-deglycase FrlB or related protein, duplicated sugar isomerase (SIS) domain [Cell wall/membrane/envelope biogenesis]; Region: AgaS; COG2222" /db_xref="CDD:441824" gene 4798552..4799583 /locus_tag="STM4540" /db_xref="GeneID:1256066" CDS 4798552..4799583 /locus_tag="STM4540" /note="similar to E. coli putative transport protein (AAC76396.1); Blastp hit to AAC76396.1 (347 aa), 26% identity in aa 42 - 341" /codon_start=1 /transl_table=11 /product="putative glucosamine-fructose-6-phosphate aminotransferase" /protein_id="NP_463399.3" /db_xref="GeneID:1256066" /translation="MNNQEKNMLGFNQDEYLTSAREIIAARQKAEQVADEIYQAGFSS LFFASVGGSLAPMMAINEFAKELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGD TKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMRHKNGVEYEYMLLYWLFFR VLSRNNEFASYDRFASQLEILPANLLKAKQKFDPQADAIASRYHNSDYMMWVGGAEMW GEVYLFSMCILEEMQWKRTRPVSSAEFFHGALELLEKDVPLILVKGEGKCRALDERVE RFASKITDNLVVIDPKAYALDGIDDEFRWIMAPCVVSTLLVDRLAAHFEKYTGHSLDI RRYYRQFDY" misc_feature 4798624..4799571 /locus_tag="STM4540" /note="Fructoselysine-6-P-deglycase FrlB or related protein, duplicated sugar isomerase (SIS) domain [Cell wall/membrane/envelope biogenesis]; Region: AgaS; COG2222" /db_xref="CDD:441824" misc_feature 4798681..4799037 /locus_tag="STM4540" /note="A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars; Region: SIS_1; cd05710" /db_xref="CDD:240214" misc_feature order(4798708..4798710,4798843..4798845) /locus_tag="STM4540" /note="putative active site [active]" /db_xref="CDD:240214" gene complement(4799717..4801969) /gene="mdoB" /locus_tag="STM4541" /db_xref="GeneID:1256067" CDS complement(4799717..4801969) /gene="mdoB" /locus_tag="STM4541" /EC_number="2.7.8.20" /note="similar to E. coli phosphoglycerol transferase I (AAC77315.1); Blastp hit to AAC77315.1 (750 aa), 92% identity in aa 1 - 749" /codon_start=1 /transl_table=11 /product="phosphoglycerol transferase I" /protein_id="NP_463400.3" /db_xref="GeneID:1256067" /translation="MLIYAWKAGRNTWWFAATLTVLGLFVILNITLYASDYFTGDGIN DAVLYTLTNSLTGAGVGKYILPGIGIALALVAVFGALGWVLRRRRHHPHHVGYSLLAL LLALGSVDASPAFRQITELVKSQMRDGDPDFAVYYKEPAKTIPNPKLNLVYIYGESLE RTYFDNDAFPNLTPELGALKNEGLDFSHTMQLPGTDYTIAGMVASQCGIPLFAPFEGN ASASVSSFFPQNICLGDILKNSGYQNYFVQGANLRFAGKDVFLKSHGFDHLYGAEELK TVVADPSYRNDWGFYDDTVLDEAWKKFEALSRSGQRFSLFTLTVDTHHPDGFISRTCN RKRYDYDGKPNQSFSAVSCSQENIAEFINKIKASPWFKDTVIVVSSDHLAMNNTAWKY LNKQDRNNLFFILRGDKPQQETLAVKRNTMDNGATVLDILGGDNFIGLGRSSLSGQSL SEVFLNVKEKVLAMKPDIIRLWNFPKEIKDFTVDRDKNMIAFSGSHFRLPLLLRVSDK RVEPLPESEYSAPLRFQLADFAPRDNFVWIDRCYKMAQLWAPALALSTDWCVSQGQLG GQQTVQHVDKAQWQGKTAFKDTMIDMERYKGNVDTLKIVDNDIRYKADSFIFNVAGAP EEVKQFSGISRPESWGRWSNAQLGDEVKIEYKAPLPKKFDLVITAKAFGDNANRPIPV RVGNEEQTLVLGHDVSTITLHFNNPTDANTLVIAPPAPVSTNEGNILGHSPRKLGIGM VEIKVVNVES" misc_feature complement(4799723..4801966) /gene="mdoB" /locus_tag="STM4541" /note="phosphatidylglycerol--membrane-oligosaccharide glycerophosphotransferase; Region: PRK03776" /db_xref="CDD:179648" misc_feature complement(order(4800824..4800829,4801001..4801003, 4801376..4801378,4801499..4801501)) /gene="mdoB" /locus_tag="STM4541" /note="putative active site [active]" /db_xref="CDD:293739" misc_feature complement(order(4800824..4800826,4801001..4801003, 4801376..4801378,4801499..4801501)) /gene="mdoB" /locus_tag="STM4541" /note="putative substrate binding site [chemical binding]; other site" /db_xref="CDD:293739" misc_feature complement(order(4801193..4801195,4801202..4801213, 4801217..4801219)) /gene="mdoB" /locus_tag="STM4541" /note="homodimer interface [polypeptide binding]; other site" /db_xref="CDD:293739" gene complement(4802291..4802764) /gene="yjjA" /locus_tag="STM4542" /db_xref="GeneID:1256068" CDS complement(4802291..4802752) /gene="yjjA" /locus_tag="STM4542" /note="similar to E. coli putative glycoprotein/receptor (AAC77316.1); Blastp hit to AAC77316.1 (165 aa), 68% identity in aa 3 - 165" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_463401.1" /db_xref="GeneID:1256068" /translation="MNTAKHVLCCAAIASVLISTSGIAASQLSAQGANAQQGGMSLSA LTGLLSRGAQSLSADNMNNAAGILQYCAKQKLASATNVENVKNQILNKLGLDTTQQEQ DTNYLNGLQGLLKTKDGQQLNLNNIGSTPLAEKVKTKACDLVLQQGLNFLS" misc_feature complement(4802297..4802752) /gene="yjjA" /locus_tag="STM4542" /note="hypothetical protein; Provisional; Region: PRK11667" /db_xref="CDD:236951" regulatory complement(4802759..4802764) /regulatory_class="ribosome_binding_site" /gene="yjjA" /locus_tag="STM4542" /note="putative RBS for yjjA; RegulonDB:STMS1H004408" gene complement(4802810..4803566) /gene="dnaC" /locus_tag="STM4543" /db_xref="GeneID:1256069" CDS complement(4802810..4803547) /gene="dnaC" /locus_tag="STM4543" /note="initiation and chain elongation; similar to E. coli chromosome replication; initiation and chain elongation (AAC77317.1); Blastp hit to AAC77317.1 (245 aa), 93% identity in aa 1 - 245" /codon_start=1 /transl_table=11 /product="chromosome replication protein" /protein_id="NP_463402.1" /db_xref="GeneID:1256069" /translation="MKNVGDLMQRLQKMMPAHITPAFKTGEELLAWQKEQGEIRAAAL ARENRAMKMQRTFNRSGIRPLHQNCSFDNYRVECDGQMNALSKARQYVDEFDGNIASF VFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNRETSEEQLLNDL SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKMLGERVM DRMRLGNSLWVNFTWDSYRSRVTGKEY" misc_feature complement(4802816..4803547) /gene="dnaC" /locus_tag="STM4543" /note="DNA replication protein DnaC; Validated; Region: PRK07952" /db_xref="CDD:181180" misc_feature complement(4803209..4803232) /gene="dnaC" /locus_tag="STM4543" /note="Walker A motif; other site" /db_xref="CDD:99707" misc_feature complement(order(4803041..4803043,4803206..4803229)) /gene="dnaC" /locus_tag="STM4543" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:99707" misc_feature complement(4803038..4803055) /gene="dnaC" /locus_tag="STM4543" /note="Walker B motif; other site" /db_xref="CDD:99707" gene complement(4803550..4804099) /gene="dnaT" /locus_tag="STM4544" /db_xref="GeneID:1256070" CDS complement(4803550..4804089) /gene="dnaT" /locus_tag="STM4544" /note="similar to E. coli DNA biosynthesis; primosomal protein i (AAC77318.1); Blastp hit to AAC77318.1 (179 aa), 81% identity in aa 1 - 179" /codon_start=1 /transl_table=11 /product="primosomal protein I" /protein_id="NP_463403.1" /db_xref="GeneID:1256070" /translation="MSSRILTSDVIGIDVLLHDHHAVLAKSTGGAVAVFANNAPAFYA VTPARMAELLALEEKLSRPGSDVALDAQFYEEPEAAPVAIPCGKFAMYPAWQPDADFQ RQAALWGVALREPVTAEELAAFIAYWQAEGKVFHHIQWQQKLARSVQISRSSNGGMPQ RDINSVSEPDNHIPPGFRG" misc_feature complement(4803553..4804089) /gene="dnaT" /locus_tag="STM4544" /note="primosomal protein DnaT; Region: PRK02854" /db_xref="CDD:179484" regulatory complement(4803561..4803566) /regulatory_class="ribosome_binding_site" /gene="dnaT" /locus_tag="STM4544" /note="putative RBS for dnaC; RegulonDB:STMS1H004409" regulatory complement(4804094..4804099) /regulatory_class="ribosome_binding_site" /gene="dnaT" /locus_tag="STM4544" /note="putative RBS for dnaT; RegulonDB:STMS1H004410" gene complement(4804182..4804670) /locus_tag="STM4545" /db_xref="GeneID:1256071" CDS complement(4804182..4804655) /locus_tag="STM4545" /note="similar to E. coli orf, hypothetical protein (AAC77319.1); Blastp hit to AAC77319.1 (108 aa), 89% identity in aa 1 - 108" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463404.1" /db_xref="GeneID:1256071" /translation="MGIIDFLLALMQDMILSAIPAVGFAMVFNVPHRALPWCALLGAL GHGSRMLMMSAGFNIEWSTFMASLLVGSIGIQWSRWYLAHPKVFTVAAVIPMFPGISA YTAMISAVKISHLGYSEPMMITLLTNFLKASSIVGALSIGLSVPGLWLYRKRPRV" misc_feature complement(4804185..4804655) /locus_tag="STM4545" /note="threonine/serine exporter; Region: PRK09917" /db_xref="CDD:182143" gene complement(4804646..4805572) /gene="yjjP" /locus_tag="STM4546" /db_xref="GeneID:1256072" CDS complement(4804646..4805557) /gene="yjjP" /locus_tag="STM4546" /note="similar to E. coli putative structural protein (AAC77320.1); Blastp hit to AAC77320.1 (277 aa), 90% identity in aa 19 - 277" /codon_start=1 /transl_table=11 /product="hypothetical protein" /protein_id="NP_463405.1" /db_xref="GeneID:1256072" /translation="MRLAVDVFINKKLILTNAIMPVLRVKKEASVIVAAHRMSFRTGR VMQEEQSIQRAVTRLCIQCGLFLLQHGAESALVDELSTRLGLALGMDSVESAISSNAI VLTTIKDGQCLTSTRKNQDRGINMHVVTEVQHIVILAEHRLLDYKGVEKRFSQLRPLR YPRWLVAFMVGLSCSCFCKLNNGGWDGAVITFFASMIAMYIRQMLAQRHLHPQINFCI TAFVATTISGLMLTLPAFSQTPTIAMAASVLLLVPGFPLINSVADMFKGHINTGLARW AIASLLTLATCVGVVMSMTVWGLRGWV" misc_feature complement(<4804649..4805422) /gene="yjjP" /locus_tag="STM4546" /note="Uncharacterized membrane protein YjjP, DUF1212 family [Function unknown]; Region: YjjP; COG2966" /db_xref="CDD:442206" regulatory complement(4804665..4804670) /regulatory_class="ribosome_binding_site" /locus_tag="STM4545" /note="putative RBS for STM4545; RegulonDB:STMS1H004411" regulatory complement(4805567..4805572) /regulatory_class="ribosome_binding_site" /gene="yjjP" /locus_tag="STM4546" /note="putative RBS for yjjP; RegulonDB:STMS1H004412" gene 4806127..4806860 /gene="yjjQ" /locus_tag="STM4547" /db_xref="GeneID:1256073" regulatory 4806127..4806132 /regulatory_class="ribosome_binding_site" /gene="yjjQ" /locus_tag="STM4547" /note="putative RBS for yjjQ; RegulonDB:STMS1H004413" CDS 4806135..4806860 /gene="yjjQ" /locus_tag="STM4547" /note="similar to E. coli putative regulator (AAC77321.1); Blastp hit to AAC77321.1 (241 aa), 66% identity in aa 1 - 241" /codon_start=1 /transl_table=11 /product="putative LuxR/UhpA family transcriptional regulator" /protein_id="NP_463406.1" /db_xref="GeneID:1256073" /translation="MLPGCCKNGLIISKTPLIQEGLKGAITGNFPDYKLAYCRTIEEL TLLQLRRSNLVIADLAVNNASPRAICEYFYSLLSQYRDIHWVFLVPKSCYPHAVDLLM GPVSTLLSDEEPIENLISVIHAGNARSERISKTLLSPQVPSEIQQSHDRPIVLTLSER KVLRLLGKGWGINQIAALLKKSNKTISAQKNSAMRRLSIHSNAEMYAWINSSQGAREL NLPSVYGETMEWKTESAREMLRS" misc_feature <4806441..4806749 /gene="yjjQ" /locus_tag="STM4547" /note="transcriptional regulator UhpA; Region: PRK10360" /db_xref="CDD:182408" misc_feature 4806597..4806767 /gene="yjjQ" /locus_tag="STM4547" /note="C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many...; Region: LuxR_C_like; cd06170" /db_xref="CDD:99777" misc_feature order(4806600..4806608,4806645..4806653,4806675..4806680, 4806684..4806689,4806693..4806707,4806738..4806740) /gene="yjjQ" /locus_tag="STM4547" /note="DNA binding residues [nucleotide binding]" /db_xref="CDD:99777" misc_feature order(4806633..4806635,4806639..4806641,4806645..4806647, 4806738..4806746,4806753..4806755,4806762..4806767) /gene="yjjQ" /locus_tag="STM4547" /note="dimerization interface [polypeptide binding]; other site" /db_xref="CDD:99777" gene 4806805..4807495 /gene="bglJ" /locus_tag="STM4548" /db_xref="GeneID:1256074" regulatory 4806805..4806810 /regulatory_class="ribosome_binding_site" /gene="bglJ" /locus_tag="STM4548" /note="putative RBS for bglJ; RegulonDB:STMS1H004414" CDS 4806821..4807495 /gene="bglJ" /locus_tag="STM4548" /note="LuxR/UhpA family; similar to E. coli 2-component transcriptional regulator (AAC77322.1); Blastp hit to AAC77322.1 (225 aa), 63% identity in aa 1 - 223" /codon_start=1 /transl_table=11 /product="transcriptional regulator (activator) of bgl operon" /protein_id="NP_463407.3" /db_xref="GeneID:1256074" /translation="MENRISKRNVALVEKCVMSTIGIKGLFDAMPDCRHTLHIFSKPS AFYKAALTTPFSAVIFSLSALRTERRTGLSSLTELAINYPHMRRLVIADDDAEARLIS ALSPLPLDGVISKASPLDVLQDALFTSLNSARRTTERTDNLWELHQNCMLSPTEREIL RFMSNGYSMPQIAVQLERNIKTIRAHKFNVMSKLGVSSDAGLLDAADILLYLRAGDAT ALQHRV" misc_feature 4806872..4807492 /gene="bglJ" /locus_tag="STM4548" /note="DNA-binding transcriptional activator BglJ; Provisional; Region: PRK11475" /db_xref="CDD:236915" gene complement(4807546..4808012) /locus_tag="STM4549" /db_xref="GeneID:1256075" CDS complement(4807546..4808004) /locus_tag="STM4549" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463408.1" /db_xref="GeneID:1256075" /translation="MSLQSVRQFLADHAPDIEIIELNQSTATVELAAKAHNVEPGQIA KTLSLKVKDTIILVVAKGDARLDNKKLKTTFGAKARMLSSDEVVNATGHPVGGVCPFG LEHPLPVYCDISLKGYNEVLPAAGATHSAVRITPERMAELTSATWVDVCQ" misc_feature complement(4807555..4807998) /locus_tag="STM4549" /note="This CD, composed mainly of bacterial single-domain proteins, includes the Thermus thermophilus (Tt) YbaK-like protein, a homolog of the trans-acting Escherichia coli YbaK Cys-tRNA(Pro) deacylase and the Agrobacterium tumefaciens ProX Ala-tRNA(Pro)...; Region: ProX_deacylase; cd04333" /db_xref="CDD:239825" misc_feature complement(order(4807633..4807635,4807714..4807719, 4807870..4807872)) /locus_tag="STM4549" /note="putative deacylase active site [active]" /db_xref="CDD:239825" regulatory complement(4808007..4808012) /regulatory_class="ribosome_binding_site" /locus_tag="STM4549" /note="putative RBS for STM4549; RegulonDB:STMS1H004415" gene complement(4808155..4808943) /gene="fhuF" /locus_tag="STM4550" /db_xref="GeneID:1256076" CDS complement(4808155..4808943) /gene="fhuF" /locus_tag="STM4550" /note="involved in reduction of ferric iron in cytoplasmic ferrioxamine B; similar to E. coli orf, hypothetical protein (AAC77323.1); Blastp hit to AAC77323.1 (262 aa), 73% identity in aa 1 - 262" /codon_start=1 /transl_table=11 /product="ferric hydrozamate transport protein" /protein_id="NP_463409.1" /db_xref="GeneID:1256076" /translation="MAYRSAPIADDIIWRAAPQPEDASLADAVRETIASTRKHLLDFI RLDETPPPAAMTLAQWTRPATFRSLLAAYSDHIYRHTPGLPRENKPLLSLWAQWYIGL MTPPLMLALLTQARAINVSAEHIHVEFHETGRAACFWLDVHQDNLATERSPEERMETL IVSALQPVIQALEATGDINAKLIWSNTGYLINWYLTEMKPLLGEALLATLRQRCFFEK QLSDGQDNPLWRTVVMRDGLLVRRTCCQRYRLPDVQQCGDCTLK" misc_feature complement(4808158..4808943) /gene="fhuF" /locus_tag="STM4550" /note="ferric iron reductase involved in ferric hydroximate transport; Provisional; Region: PRK10647" /db_xref="CDD:182616" gene complement(4809064..4810128) /locus_tag="STM4551" /db_xref="GeneID:1256077" CDS complement(4809064..4810128) /locus_tag="STM4551" /note="similar to E. coli orf, hypothetical protein (AAC74110.1); Blastp hit to AAC74110.1 (452 aa), 41% identity in aa 274 - 444, 24% identity in aa 14 - 102" /codon_start=1 /transl_table=11 /product="putative diguanylate cyclase/phosphodiesterase domain 1 containing protein" /protein_id="NP_463410.1" /db_xref="GeneID:1256077" /translation="MTTPSWRSLRIKKYQFSLRLFLFLNAVSALFTLVFPLYQINVFC TPMIGIVVLSVLLLIWHGKYGQKRINLPFISLLFGGIWAAHIALKYPALGHYDFSFLL ISLLSVLFIGSIAFAANIVAFTLYSLPPVAVCLWLNGNEQGLRILYLLTLPMVGIAIQ HVIQKRYDNFAQQLMFKLLAERETLNGLSMLDPLTGLYNRRGLQNRLDTLQAPGSHEH YVLLLDIDHFKAYNDHYGHMMGDQALIRVSAAIRDAVRSRDVVCRFGGEEFLVLLTTA EPQQARATAERIRQEVYDLKIPHMFNESVATNVTVSIGIAPLTDRNIGDAIEKADKAL YEAKHLGRNHILVSDDMRAL" misc_feature complement(4809088..4809903) /locus_tag="STM4551" /note="GGDEF domain, diguanylate cyclase (c-di-GMP synthetase) or its enzymatically inactive variants [Signal transduction mechanisms]; Region: GGDEF; COG2199" /db_xref="CDD:441801" gene 4810372..4810615 /locus_tag="STM4552" /db_xref="GeneID:1256078" regulatory 4810372..4810377 /regulatory_class="ribosome_binding_site" /locus_tag="STM4552" /note="putative RBS for STM4552; RegulonDB:STMS1H004416" CDS 4810379..4810615 /locus_tag="STM4552" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463411.1" /db_xref="GeneID:1256078" /translation="MLQRTLGSGWGVLLPGVIIVGLAFIGLSADALKLLIVSGLLLSA LMLYHKQLRHFVLLPSCIALIGGMMLAMMNWNQG" misc_feature 4810379..4810603 /locus_tag="STM4552" /note="Protein of unknown function (DUF1435); Region: DUF1435; pfam07256" /db_xref="CDD:429367" gene complement(4810631..4810714) /gene="leuV" /locus_tag="STM4553" /db_xref="GeneID:1256079" tRNA complement(4810631..4810714) /gene="leuV" /locus_tag="STM4553" /product="tRNA-Leu" /db_xref="GeneID:1256079" gene complement(4810749..4810832) /gene="leuP" /locus_tag="STM4554" /db_xref="GeneID:1256080" tRNA complement(4810749..4810832) /gene="leuP" /locus_tag="STM4554" /product="tRNA-Leu" /db_xref="GeneID:1256080" gene complement(4810863..4810946) /gene="leuQ" /locus_tag="STM4555" /db_xref="GeneID:1256081" tRNA complement(4810863..4810946) /gene="leuQ" /locus_tag="STM4555" /product="tRNA-Leu" /db_xref="GeneID:1256081" gene complement(4811156..4812196) /gene="rsmC" /locus_tag="STM4556" /db_xref="GeneID:1256082" CDS complement(4811156..4812184) /gene="rsmC" /locus_tag="STM4556" /note="m2G 1207 methylase; similar to E. coli putative enzyme (AAC77324.1); Blastp hit to AAC77324.1 (343 aa), 90% identity in aa 1 - 342" /codon_start=1 /transl_table=11 /product="16S ribosomal rRNA" /protein_id="NP_463412.1" /db_xref="GeneID:1256082" /translation="MSAFTPASEVLLRHSDDFEQSRILFAGDLQDDLPARFECAASRA HTQQFHHWQVLSRQMGDNVRFSLVAQASDVADCDTLIYYWPKNKPEAQFQLMNILSLM PSGVDVFVVGENRSGVRSAEPMLADYAPLNKVDSARRCGLYHGRLEKQPQFSLESWWA EYNIDGLTIKTLPGVFSRDGLDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAALASHS PKVRLTLCDVSAPAVEASRATLAANGLEGEVFASNVFSEVKGRFDMIISNPPFHDGMQ TSLDAAQTLIRGAVRHLNSGGELRIVANAFLPYPKILDETFGFHEVIAQTGRFKVYRT VMTRQAKK" misc_feature complement(4811159..4812184) /gene="rsmC" /locus_tag="STM4556" /note="16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC; Region: rsmC; PRK09489" /db_xref="CDD:181902" regulatory complement(4812191..4812196) /regulatory_class="ribosome_binding_site" /gene="rsmC" /locus_tag="STM4556" /note="putative RBS for rsmC; RegulonDB:STMS1H004420" gene 4812272..4812724 /gene="holD" /locus_tag="STM4557" /db_xref="GeneID:1256083" regulatory 4812272..4812277 /regulatory_class="ribosome_binding_site" /gene="holD" /locus_tag="STM4557" /note="putative RBS for holD; RegulonDB:STMS1H004421" CDS 4812287..4812724 /gene="holD" /locus_tag="STM4557" /EC_number="2.7.7.7" /note="similar to E. coli DNA polymerase III, psi subunit (AAC77325.1); Blastp hit to AAC77325.1 (137 aa), 78% identity in aa 1 - 137" /codon_start=1 /transl_table=11 /product="DNA polymerase III, psi subunit" /protein_id="NP_463413.1" /db_xref="GeneID:1256083" /translation="MTSRRDWQLQQLGITQWALRRPGALQGEIAISLPAHVRLIVVAE ELPALNEPLMRDILRALTVSPDQVLPLTPERVAMLPQGSRCNSWRLGTDAPLQLEGAQ VTTPAFNELRANPAARAALWQQICEHEHDFYPQHDRSPRSLAD" misc_feature 4812290..4812697 /gene="holD" /locus_tag="STM4557" /note="DNA polymerase III, psi subunit [Replication, recombination and repair]; Region: HolD; COG3050" /db_xref="CDD:442284" gene 4812649..4813115 /gene="rimI" /locus_tag="STM4558" /db_xref="GeneID:1256084" regulatory 4812649..4812654 /regulatory_class="ribosome_binding_site" /gene="holD" /locus_tag="STM4557" /note="putative RBS for rimI; RegulonDB:STMS1H004422" CDS 4812669..4813115 /gene="rimI" /locus_tag="STM4558" /EC_number="2.3.1.267" /note="acetylation of N-terminal alanine; similar to E. coli acyltransferase for 30S ribosomal subunit protein S18; acetylation of N-terminal alanine (AAC77326.1); Blastp hit to AAC77326.1 (148 aa), 86% identity in aa 1 - 148" /codon_start=1 /transl_table=11 /product="modification of 30S ribosomal subunit protein S18" /protein_id="NP_463414.1" /db_xref="GeneID:1256084" /translation="MNTISILSTTDLPAAWQIEQRAHAFPWSEKTFFGNQGERYLNLK LTADDRMAAFAITQVVLDEATLFNIAVDPDFQRRGLGRMLLEHLIDELETRGVVTLWL EVRASNAAAIALYESLGFNEATIRRNYYPTAQGHEDAIIMALPISM" misc_feature 4812669..4813106 /gene="rimI" /locus_tag="STM4558" /note="ribosomal-protein-alanine N-acetyltransferase; Provisional; Region: rimI; PRK09491" /db_xref="CDD:181904" misc_feature order(4812873..4812881,4812909..4812914) /gene="rimI" /locus_tag="STM4558" /note="Coenzyme A binding pocket [chemical binding]; other site" /db_xref="CDD:173926" gene 4813126..4813814 /gene="yjjG" /locus_tag="STM4559" /db_xref="GeneID:1256085" regulatory 4813126..4813131 /regulatory_class="ribosome_binding_site" /gene="yjjG" /locus_tag="STM4559" /note="putative RBS for yjjG; RegulonDB:STMS1H004423" CDS 4813134..4813814 /gene="yjjG" /locus_tag="STM4559" /note="similar to E. coli putative phosphatase (AAC77327.1); Blastp hit to AAC77327.1 (225 aa), 91% identity in aa 1 - 225" /codon_start=1 /transl_table=11 /product="putative haloacid dehalogenase-like hydrolase" /protein_id="NP_463415.3" /db_xref="GeneID:1256085" /translation="MMKWDWIFFDADETLFTFDSFTGLQRMFLDYSVTFTAEDFQDYQ AVNKPLWVDYQNGAITSLQLQHARFQSWAERLNVAPGLLNDAFISAMAEICSPLPGAV SLLNAIRGQAKIGIITNGFTALQQTRLERTGLREYFDLLVISEQVGVAKPDPKIFNYA LEQAGNPDRSRVLMVGDTAESDILGGINAGLSTCWLNAHHREQPAGIHPTWTVASLSE LEQLLCKH" misc_feature 4813137..4813808 /gene="yjjG" /locus_tag="STM4559" /note="dUMP phosphatase; Provisional; Region: PRK09449" /db_xref="CDD:181865" gene 4813892..4815495 /gene="prfC" /locus_tag="STM4560" /db_xref="GeneID:1256086" regulatory 4813892..4813897 /regulatory_class="ribosome_binding_site" /gene="prfC" /locus_tag="STM4560" /note="putative RBS for prfC; RegulonDB:STMS1H004424" CDS 4813906..4815495 /gene="prfC" /locus_tag="STM4560" /note="peptide chain release factor 3 (RF-3). (SW:RF3_SALTY)" /codon_start=1 /transl_table=11 /product="peptide chain release factor RF-3" /protein_id="NP_463416.1" /db_xref="GeneID:1256086" /translation="MTLSPYLQEVAKRRTFAIISHPDAGKTTITEKVLLFGQAIQTAG TVKGRGSSQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRT LTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPMELLDEVEN ELKIGCAPITWPIGCGKLFKGVYHLYKDETYLYQTGKGHTIQEVRIVKGLNNPDLDAA VGEDLAQQLRDELELVQGASNEFDEELFLAGEITPVFFGTALGNFGVDHMLDGLVAWA PAPMPRQTDTRTVEASEEKFTGFVFKIQANMDPKHRDRVAFMRVVSGKYEKGMKLRQV RTGKDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGEMMKFTGIPN FAPELFRRIRLKDPLKQKQLLKGLVQLSEEGAVQVFRPISNNDLIVGAVGVLQFDVVV ARLKSEYNVEAIYESVNVATARWVESADAKKFEEFKRKNETQLALDGGDNLTYIAPTM VNLNLTQERYPDVQFRKTREH" misc_feature 4813915..4815492 /gene="prfC" /locus_tag="STM4560" /note="peptide chain release factor 3; Provisional; Region: prfC; PRK00741" /db_xref="CDD:179105" gene 4815884..4816514 /gene="osmY" /locus_tag="STM4561" /db_xref="GeneID:1256087" regulatory 4815884..4815889 /regulatory_class="ribosome_binding_site" /gene="osmY" /locus_tag="STM4561" /note="putative RBS for osmY; RegulonDB:STMS1H004425" CDS 4815897..4816514 /gene="osmY" /locus_tag="STM4561" /note="RpoS-dependent stationary phase gene; similar to E. coli hyperosmotically inducible periplasmic protein (AAC77329.1); Blastp hit to AAC77329.1 (201 aa), 89% identity in aa 1 - 201" /codon_start=1 /transl_table=11 /product="hyperosmotically inducible periplasmic protein" /protein_id="NP_463417.1" /db_xref="GeneID:1256087" /translation="MTMTRLKISKTLLAVMLTSAVATGSAFAENATTDKAQSGTETAG QKVDSSMNKVGNFMDDSAITAKVKAALVDHDNIKSTDISVETNQKVVTLSGFVESQAQ AEAAVKVAKGVEGVTSVSDKLHVRDNKEGSVKGYAGDTATTSEVKAKLLADDLVPSRK VKVETTDGVVQLSGTVETQEQSDRAESIAKAVDGVKSVKNDLKVQ" misc_feature 4815903..4816511 /gene="osmY" /locus_tag="STM4561" /note="molecular chaperone OsmY; Region: PRK10568" /db_xref="CDD:182556" gene 4816621..4816804 /locus_tag="STM4562" /db_xref="GeneID:1256088" regulatory 4816621..4816626 /regulatory_class="ribosome_binding_site" /locus_tag="STM4562" /note="putative RBS for STM4562; RegulonDB:STMS1H004426" CDS 4816625..4816804 /locus_tag="STM4562" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463418.1" /db_xref="GeneID:1256088" /translation="MVKERLMFRWGIIFLVIALIAAALGFGGLAGTAAGAAKIVFVVG IVLFLVSLFMGRKRP" misc_feature 4816643..4816798 /locus_tag="STM4562" /note="Uncharacterized membrane protein YtjA, UPF0391 family [Function unknown]; Region: YtjA; COG5487" /db_xref="CDD:444238" gene 4816915..4818001 /gene="yjjU" /locus_tag="STM4563" /db_xref="GeneID:1256089" regulatory 4816915..4816920 /regulatory_class="ribosome_binding_site" /gene="yjjU" /locus_tag="STM4563" /note="putative RBS for yjjU; RegulonDB:STMS1H004427" CDS 4816928..4818001 /gene="yjjU" /locus_tag="STM4563" /note="similar to E. coli orf, hypothetical protein (AAC77330.1); Blastp hit to AAC77330.1 (357 aa), 85% identity in aa 1 - 357" /codon_start=1 /transl_table=11 /product="putative phosphoesterase" /protein_id="NP_463419.1" /db_xref="GeneID:1256089" /translation="MGQRIPVTLGNIAPLSLTPFRPGRMALVCEGGGQRGIFTAGVLD EFMHAQFNPFHLYFGTSAGAQNLSAYLCNQPGYGRKVIMRYTTRREFFDPLRFVRGGN LIDLDWLVESTAARMPLQMDTAARLFDSGKSFYMCACRGDDYTPGYFSPTKQNWLDII RASSAIPGFYRTGVTLEGINYLDGGISDAIPVQEAAKRGAKTIVVIRTVPSQMYYTPQ WFKRMERWLGESSLQPLVNLVQHHETSYSAIQQFIEKPPGKLRIIEIYPPKPLHSMAL GSRIPALREDYKTGRLCGRYFLATVGKLLAATPPLLRHTSRIAVPETVVVPPAPVAND THVAEVISAPQANDTTFTDEDLA" misc_feature 4816985..4817836 /gene="yjjU" /locus_tag="STM4563" /note="Predicted phospholipase, patatin/cPLA2 family [Lipid transport and metabolism]; Region: YjjU; COG4667" /db_xref="CDD:443704" gene 4817987..4818771 /gene="yjjV" /locus_tag="STM4564" /db_xref="GeneID:1256090" regulatory 4817987..4817992 /regulatory_class="ribosome_binding_site" /gene="yjjV" /locus_tag="STM4564" /note="putative RBS for yjjV; RegulonDB:STMS1H004428" CDS 4817998..4818771 /gene="yjjV" /locus_tag="STM4564" /note="similar to E. coli orf, hypothetical protein (AAC77331.1); Blastp hit to AAC77331.1 (211 aa), 76% identity in aa 1 - 210" /codon_start=1 /transl_table=11 /product="putative hydrolase" /protein_id="NP_463420.1" /db_xref="GeneID:1256090" /translation="MSWRFIDTHCHFDFPPFTGDERASIQRACEAGVEKIIVPATEAA HFPRVLALAARFPSLYAALGLHPIVIERHADDDSDKLQQALAQQQNVVAVGEIGLDLY RDDPQFARQERFLDAQLQLAKRYDLPVILHSRRTHDKLAMHLKRQDLPRTGVVHGFAG SLQQAERFVRLGYKIGVGGTITYPRASKTRDVMARLPLDALLLETDAPDMPLKGFQGQ PNRPEQAARVFDALCELRPEPAEVIADTLYRNTITLFRL" misc_feature 4817998..4818768 /gene="yjjV" /locus_tag="STM4564" /note="metal-dependent hydrolase; Region: PRK11449" /db_xref="CDD:171118" misc_feature order(4818022..4818024,4818028..4818030,4818391..4818393, 4818463..4818465,4818613..4818615) /gene="yjjV" /locus_tag="STM4564" /note="active site" /db_xref="CDD:238635" gene complement(4818804..4819667) /gene="yjjW" /locus_tag="STM4565" /db_xref="GeneID:1256091" CDS complement(4818804..4819667) /gene="yjjW" /locus_tag="STM4565" /note="similar to E. coli putative activating enzyme (AAC77332.1); Blastp hit to AAC77332.1 (287 aa), 81% identity in aa 1 - 287" /codon_start=1 /transl_table=11 /product="pyruvate formate lyase activating enzyme" /protein_id="NP_463421.1" /db_xref="GeneID:1256091" /translation="MNNRCALVSKIIAFSCVDGPGSRLALFLQGCNLRCKNCHNPWTM GRCNDCGECVSQCPHHALSIDGGKVVWRSDVCEQCDTCLKMCPQQATPMAQTMSVDDV LRHIRKASLFIEGITVSGGEATTQLPFIVALFTAIKADPQLQRLTCLVDSNGQLSETG WQKLLPVCDGVMLDLKAWKSECHHRLTGRDNTHIKHSIRFLAARGKLAELRLLVIPGQ VDYAAHIDSLAAFITSLGEVPVRLNAFHAHGVYGEAKAWPGATPQEVERLADGLRARG VAKLILPALYL" misc_feature complement(4818819..4819655) /gene="yjjW" /locus_tag="STM4565" /note="glycine radical enzyme activase, YjjW family; Region: activase_YjjW; TIGR04041" /db_xref="CDD:274938" gene complement(4819639..4821201) /gene="yjjI" /locus_tag="STM4566" /db_xref="GeneID:1256092" CDS complement(4819639..4821189) /gene="yjjI" /locus_tag="STM4566" /note="similar to E. coli orf, hypothetical protein (AAC77333.1); Blastp hit to AAC77333.1 (516 aa), 89% identity in aa 1 - 516" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463422.1" /db_xref="GeneID:1256092" /translation="MPASCETALQQRCQQIVTSPVLTPEQKRHFLALEAENALPYPTL PEDARQALDEGVICDMFEGHAPFKPRYVLPDYARFLANGSQWLELEGAKDLDDALSLL TILYHHVPSVTSMPVYLGQLDALLQPYVRILTQDAIDIRIKRFWRYLDRTLPDAFMHA NIGPADTPVTRAILRADAELKQVAPNLTFIYDAEITPDDLLLEVAKNICECSKPHISN GPVNDKIFTKGHYGIVSCYNSLPLGGGGSTLVRLNLKAVAERSTSVDDFFSRTLPHYC RQQIAIINSRCEFLYEKSHFFENSFLVQEGLIEPERFAPMFGMYGLAEAVNLLCENAG LTARYGKNDTANELGYRISAQLADFVENTPVKYGWKQRALLHAQSGISSDIGTTPGAR LPYGDEPDPITHLQTVAPHHAFYHAGISDILTLDETIKRNPQALVQLCLGAFKAGMRE FTANVSGNDLVRVTGYMVRLSDLAKFRAEGSRTNTTWLGEEAARNTRILERQPRVVSH EQQMRFSQ" misc_feature complement(4819678..4821159) /gene="yjjI" /locus_tag="STM4566" /note="glycine radical enzyme, YjjI family; Region: glycyl_YjjI; TIGR04040" /db_xref="CDD:274937" protein_bind 4821072..4821085 /note="putative binding site for DeoR, RegulonDB: STMS1H000134" /bound_moiety="DeoR" protein_bind 4821078..4821094 /note="putative binding site for DeoR, RegulonDB: STMS1H000133" /bound_moiety="DeoR" regulatory complement(4821196..4821201) /regulatory_class="ribosome_binding_site" /gene="yjjI" /locus_tag="STM4566" /note="putative RBS for yjjI; RegulonDB:STMS1H004429" gene 4821270..4822228 /gene="deoC" /locus_tag="STM4567" /db_xref="GeneID:1256093" regulatory 4821270..4821278 /regulatory_class="minus_35_signal" /gene="deoC" /locus_tag="STM4567" /note="putative -35_signal for deoC; RegulonDB:STMLTH004680" protein_bind 4821284..4821304 /gene="deoC" /locus_tag="STM4567" /note="putative binding site for CRP, RegulonDB: STMS1H000071" /bound_moiety="CRP" regulatory 4821294..4821302 /regulatory_class="minus_10_signal" /gene="deoC" /locus_tag="STM4567" /note="putative -10_signal for deoC; RegulonDB:STMLTH004680" protein_bind 4821318..4821360 /gene="deoC" /locus_tag="STM4567" /note="putative binding site for CytR, RegulonDB: STMS1H000130" /bound_moiety="CytR" protein_bind 4821332..4821352 /gene="deoC" /locus_tag="STM4567" /note="putative binding site for CRP, RegulonDB: STMS1H000058" /bound_moiety="CRP" protein_bind 4821388..4821404 /gene="deoC" /locus_tag="STM4567" /note="putative binding site for DeoR, RegulonDB: STMS1H000132" /bound_moiety="DeoR" regulatory 4821425..4821430 /regulatory_class="ribosome_binding_site" /gene="deoC" /locus_tag="STM4567" /note="putative RBS for deoC; RegulonDB:STMS1H004430" CDS 4821431..4822228 /gene="deoC" /locus_tag="STM4567" /EC_number="4.1.2.4" /note="similar to E. coli 2-deoxyribose-5-phosphate aldolase (AAC77334.1); Blastp hit to AAC77334.1 (259 aa), 96% identity in aa 1 - 259" /codon_start=1 /transl_table=11 /product="2-deoxyribose-5-phosphate aldolase" /protein_id="NP_463423.1" /db_xref="GeneID:1256093" /translation="MPLENVMTDLKASSLRALKLMDLTTLNDDDTNEKVIALCHQAKT PVGNTAAICIYPRFIPIARKTLKEQGTPDIRIATVTNFPHGNDDIDIALAETRAAIAY GADEVDVVFPYRALIAGNEQVGFDLVKACKDACAAANVLLKVIIETGELKEEALIRKA SEISIKAGADFIKTSTGKVPVNATPESARIMMEVIRDMGVSKTVGFKPAGGVRTAEDA QKFLAIADELFGADWADSRHYRFGASSLLASLLKALGHGDGKSASSY" misc_feature 4821476..4822147 /gene="deoC" /locus_tag="STM4567" /note="A large family of domains similar to triose phosphate isomerase (TIM) which, in general, share an eight beta/alpha closed barrel structure; Region: TIM-like beta/alpha barrel domains; cl21457" /db_xref="CDD:473867" misc_feature order(4821506..4821508,4821512..4821514,4821518..4821520, 4821596..4821604,4821674..4821676,4821698..4821700, 4821713..4821715,4821728..4821739,4821764..4821766, 4821770..4821772,4821833..4821838,4821878..4821880) /gene="deoC" /locus_tag="STM4567" /note="intersubunit interface [polypeptide binding]; other site" /db_xref="CDD:188646" misc_feature order(4821947..4821949,4821956..4821958,4822055..4822063, 4822118..4822123) /gene="deoC" /locus_tag="STM4567" /note="active site" /db_xref="CDD:188646" misc_feature 4821947..4821949 /gene="deoC" /locus_tag="STM4567" /note="catalytic residue [active]" /db_xref="CDD:188646" gene 4822340..4823674 /gene="deoA" /locus_tag="STM4568" /db_xref="GeneID:1256094" regulatory 4822340..4822345 /regulatory_class="ribosome_binding_site" /gene="deoA" /locus_tag="STM4568" /note="putative RBS for deoA; RegulonDB:STMS1H004431" CDS 4822352..4823674 /gene="deoA" /locus_tag="STM4568" /EC_number="2.4.2.4" /note="similar to E. coli thymidine phosphorylase (AAC77335.1); Blastp hit to AAC77335.1 (440 aa), 95% identity in aa 1 - 440" /codon_start=1 /transl_table=11 /product="thymidine phosphorylase" /protein_id="NP_463424.1" /db_xref="GeneID:1256094" /translation="MFLAQEIIRKKRDGHALSDEEIRFFINGIRDNTISEGQIAALAM TIFFHDMTMPERVSLTMAMRDSGTVLDWKSLNLNGPIVDKHSTGGVGDVTSLMLGPMV AACGGYVPMISGRGLGHTGGTLDKLEAIPGFDIFPDDNRFREIIQDVGVAIIGQTSSL APADKRFYATRDITATVDSIPLITGSILAKKLAEGLDALVMDVKVGSGAFMPTYELSE ALAEAIVGVANGAGVRTTALLTDMNQVLASSAGNAVEVREAVQFLTGEYRNPRLFDVT MALCVEMLISGQLAKDDAEARAKLQAVLDNGKAAEVFGRMVAAQKGPSDFVENYDKYL PTAMLSKAVYADTEGFISAMDTRALGMAVVSMGGGRRQASDTIDYSVGFTDMARLGDS IDGQRPLAVIHAKDEASWQEAAKAVKAAIILDDKAPASTPSVYRRITE" misc_feature 4822352..4823671 /gene="deoA" /locus_tag="STM4568" /note="thymidine phosphorylase; Reviewed; Region: deoA; PRK05820" /db_xref="CDD:180276" gene 4823715..4824949 /gene="deoB" /locus_tag="STM4569" /db_xref="GeneID:1256095" regulatory 4823715..4823720 /regulatory_class="ribosome_binding_site" /gene="deoB" /locus_tag="STM4569" /note="putative RBS for deoB; RegulonDB:STMS1H004432" CDS 4823726..4824949 /gene="deoB" /locus_tag="STM4569" /EC_number="5.4.2.7" /note="similar to E. coli phosphopentomutase (AAC77336.1); Blastp hit to AAC77336.1 (407 aa), 93% identity in aa 1 - 406" /codon_start=1 /transl_table=11 /product="phosphopentomutase" /protein_id="NP_463425.1" /db_xref="GeneID:1256095" /translation="MKRAFIMVLDSFGIGATEDADRFGDVGSDTLGHIAEACAKGEAD NGRKGPLNLPNLTRLGLVKAHEGSTGKIAAGMDGNADVIGAYAWAHELSSGKDTPSGH WEIAGVPVLFDWGYFSDHENSFPQELLDKLVKRANLPGYLGNCHSSGTVILDQLGEEH MKTGKPIFYTSADSVFQIACHEETFGLDKLYELCEIAREELTEGGYNIGRVIARPFIG DKAGNFQRTGNRHDLAVEPPAPTVLQKLVDEKQGHVVSVGKIADIYANCGITKKVKAT GLDALFDATLKEMKEAGDKTIVFTNFVDFDSSWGHRRDIAGYAAGLELFDRRLPELME LVGEDDILILTADHGCDPSWTGTDHTREHIPVLIYGPKVKPGSLGHRETFADIGQTLA TYFGTSPMDYGKNML" misc_feature 4823726..4824946 /gene="deoB" /locus_tag="STM4569" /note="phosphopentomutase; Provisional; Region: PRK05362" /db_xref="CDD:235430" misc_feature order(4823753..4823755,4824017..4824019,4824167..4824172, 4824230..4824232,4824242..4824244,4824248..4824250, 4824254..4824256,4824353..4824355,4824359..4824361, 4824365..4824367,4824401..4824403,4824413..4824415, 4824500..4824502,4824641..4824643,4824656..4824658, 4824764..4824769,4824800..4824802) /gene="deoB" /locus_tag="STM4569" /note="active site" /db_xref="CDD:293733" misc_feature order(4824017..4824019,4824167..4824172,4824230..4824232, 4824242..4824244,4824254..4824256,4824353..4824355, 4824359..4824361,4824365..4824367,4824401..4824403, 4824500..4824502,4824641..4824643,4824656..4824658, 4824767..4824769,4824800..4824802) /gene="deoB" /locus_tag="STM4569" /note="substrate binding site [chemical binding]; other site" /db_xref="CDD:293733" misc_feature order(4824167..4824172,4824242..4824244,4824248..4824250, 4824359..4824361,4824365..4824367,4824401..4824403, 4824413..4824415) /gene="deoB" /locus_tag="STM4569" /note="activator binding site [chemical binding]; other site" /db_xref="CDD:293733" gene 4825146..4825878 /gene="deoD" /locus_tag="STM4570" /db_xref="GeneID:1256096" regulatory 4825146..4825151 /regulatory_class="ribosome_binding_site" /gene="deoD" /locus_tag="STM4570" /note="putative RBS for deoD; RegulonDB:STMS1H004433" CDS 4825159..4825878 /gene="deoD" /locus_tag="STM4570" /EC_number="2.4.2.1" /note="similar to E. coli purine-nucleoside phosphorylase (AAC77337.1); Blastp hit to AAC77337.1 (239 aa), 96% identity in aa 1 - 239" /codon_start=1 /transl_table=11 /product="purine-nucleoside phosphorylase" /protein_id="NP_463426.1" /db_xref="GeneID:1256096" /translation="MATPHINAEMGDFADVVLMPGDPLRAKHIAETFLENVREVNNVR GMLGFTGTYKGRKISVMGHGMGIPSCSIYTKELITDFGVKKIIRVGSCGAVRMDVKLR DVVIGMGACTDSKVNRIRFKDHDFAAIADFDMVRNAVDAAKALGVDARVGNLFSADLF YSPDGEMFDVMEKYGVLGVEMEAAGIYGVAAEFGAKALTICTVSDHIRTHEQTTAAER QTTFNDMIKIALESVLLGDKE" misc_feature 4825162..4825866 /gene="deoD" /locus_tag="STM4570" /note="DeoD-type purine-nucleoside phosphorylase; Region: deoD; PRK05819" /db_xref="CDD:180275" misc_feature order(4825171..4825173,4825219..4825230,4825282..4825284, 4825288..4825293,4825351..4825356,4825360..4825365, 4825372..4825377,4825381..4825386,4825480..4825518, 4825525..4825548,4825552..4825557,4825561..4825566, 4825573..4825578,4825609..4825617,4825621..4825623, 4825630..4825641,4825666..4825680,4825684..4825686, 4825699..4825701,4825720..4825722,4825729..4825734, 4825738..4825740) /gene="deoD" /locus_tag="STM4570" /note="homohexamer interface [polypeptide binding]; other site" /db_xref="CDD:350157" misc_feature order(4825216..4825224,4825231..4825233,4825351..4825353, 4825420..4825437,4825636..4825638,4825693..4825704, 4825768..4825773,4825777..4825779) /gene="deoD" /locus_tag="STM4570" /note="active site" /db_xref="CDD:350157" misc_feature order(4825216..4825224,4825231..4825233,4825288..4825290, 4825420..4825431,4825702..4825704) /gene="deoD" /locus_tag="STM4570" /note="phosphate binding site [ion binding]; other site" /db_xref="CDD:350157" misc_feature order(4825351..4825353,4825420..4825422,4825429..4825437, 4825636..4825638,4825693..4825704,4825768..4825773, 4825777..4825779) /gene="deoD" /locus_tag="STM4570" /note="purine nucleoside binding site [chemical binding]; other site" /db_xref="CDD:350157" gene complement(4825916..4826493) /locus_tag="STM4571" /db_xref="GeneID:1256097" CDS complement(4825916..4826488) /locus_tag="STM4571" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_463427.1" /db_xref="GeneID:1256097" /translation="MKSNSKWLGIAICCIFTALLPPSARADDDCQITFSSPNVSFGWL KQDDIVNSQQGWNQMSSQEVHVSVSCPESQNIALFVQASAGEKGRFYFGNNGGLAVRV SQMIVDGKSYPIASTLDRVSFAPNDSALDSLLLHNNNGIIAMDNNQQVSGKMMNVTLT LTPVLNDNQFTHATDTVMLESNLQWEVLTK" misc_feature complement(4825919..4826476) /locus_tag="STM4571" /note="hypothetical protein; Provisional; Region: PRK15301" /db_xref="CDD:185201" gene complement(4826485..4828893) /gene="stjB" /locus_tag="STM4572" /db_xref="GeneID:1256098" CDS complement(4826485..4828893) /gene="stjB" /locus_tag="STM4572" /note="similar to E. coli putative outer membrane protein (AAC76248.1); Blastp hit to AAC76248.1 (793 aa), 40% identity in aa 29 - 793" /codon_start=1 /transl_table=11 /product="putative fimbrial usher protein" /protein_id="NP_463428.1" /db_xref="GeneID:1256098" /translation="MKYLKLPLYIKTALYCSLATTTFSALAEELNFDMGILTSRGISP NVAQYFSRAPRFLPGSHTVMVKINGVNRGSLVARFDTEGQLCVDDDFLSASGLVSLNI SAKETCHSLQEDYPSAIITPLPNSESLELFVPAQALDNNLLSLNNVIKGGTAGLFNYN LYASRSESSGSDSRNYAQANLEAGLNFAEWTLRSRYMLTNNDGEYRTDSLYTYAEHVF QAQKMRAQVGQINVNSSLFSGAPINGVQLIPEQGLAQDTQGVTINGIARTHQARVEVR QSGQIIYTAPVNAGAFTLENVPIIRSNTDLNVSVVETDGSTTTFTVPAVSFNLRELTP AGLTMSIGRIRDTTSDYSLPWIYNISDGWKLSENWLAQASGVLAQDYQAAGGMLQWLP TNKWTFSGSMLGSKASFGESLQGAKSELRASMALPGEIRLDVSTARYSDGYRELTDAL NKDAYEYQSSSSANIAWNHNLLGTFSLGYYTYQATDNDNDSRSIMASWGKTFKYASIT ANWQHAVNQDDENHNDSNDDDMFYINISIPLGEQRVGAYMRNQGDKTTYGLQNNGSLS KDTHYYISADRDAKNQQNSFNGNLNSNLHYTQLSVGGGTDGDNYRNYNATFSGGIAAH EHGITFSPYTIKNTFAIARLSEPESGIEIATPQGRIWTDHWGQAVIPGLTEWRKSRVE VNANTLPKSMELANGIKNITVAHSAFRVLDFNVLNTRRVMLAVKRPDGSWLPKGTSIV DEKNNYLVSAVDSGRVFITDVGDNPALYAADDDMNRLCRIHYTLQKTQDKEAFYETAK GVCQ" misc_feature complement(4826488..4828893) /gene="stjB" /locus_tag="STM4572" /note="putative fimbrial outer membrane usher protein; Provisional; Region: PRK15304" /db_xref="CDD:237937" regulatory complement(4826488..4826493) /regulatory_class="ribosome_binding_site" /locus_tag="STM4571" /note="putative RBS for STM4571; RegulonDB:STMS1H004434" gene complement(4828907..4829628) /gene="stjC" /locus_tag="STM4573" /db_xref="GeneID:1256099" CDS complement(4828907..4829614) /gene="stjC" /locus_tag="STM4573" /note="similar to E. coli putative chaperone (AAC76247.1); Blastp hit to AAC76247.1 (224 aa), 49% identity in aa 1 - 223" /codon_start=1 /transl_table=11 /product="putative fimbrial chaparone protein" /protein_id="NP_463429.1" /db_xref="GeneID:1256099" /translation="MPAVTKLPLLLLSVPFVFSTLFSQANAAGMVPETTLLVIEESTH SGVMNVKNTDSNPALLYTTVVDLPDDNGVKLDVTQPVVRVEAGQQQQLRFIMESTEPL TVEHYKRVTFEGIPPKSTDKGMKIGFNLRQDLPVLIRPKNLPVVTDAWKLLTWSRNGQ TINVKNPSPYVVRLAQNITFLPSGGEGTIKKTYILPGETLNVSIKTPFAADTSVRFYP ASRYGIEVPSFTSPLVP" misc_feature complement(4828910..4829602) /gene="stjC" /locus_tag="STM4573" /note="putative fimbrial chaperone protein; Provisional; Region: PRK09918" /db_xref="CDD:236632" regulatory complement(4829623..4829628) /regulatory_class="ribosome_binding_site" /gene="stjC" /locus_tag="STM4573" /note="putative RBS for stjC; RegulonDB:STMS1H004435" gene complement(4829692..4830392) /locus_tag="STM4574" /db_xref="GeneID:1256100" CDS complement(4829692..4830381) /locus_tag="STM4574" /note="similar to E. coli putative transcriptional regulator (AAC76251.1); Blastp hit to AAC76251.1 (238 aa), 32% identity in aa 1 - 238" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_463430.1" /db_xref="GeneID:1256100" /translation="MKKILLITAIAASFATTSVNADTTAVLKVTGQLVVGGCTPELSG GGVVDYGTIRLATLSATDVNQLGTKDVSLSISCPSATKAAWTITDDRADTHPGASVIS IANGDMTNSIVSDTTMSYGVGKTTEGVKIGAFSIYTDTANVTADGVKSDAISGTVDSP VWQKSSTGIIKNGNMEMFTVATKGTTEPVPYTLAIFPLKTSLAIQNTATLAITDDTDL DGQATITLKYL" misc_feature complement(4829695..4830381) /locus_tag="STM4574" /note="hypothetical protein; Provisional; Region: PRK15302" /db_xref="CDD:185202" regulatory complement(4830387..4830392) /regulatory_class="ribosome_binding_site" /locus_tag="STM4574" /note="putative RBS for STM4574; RegulonDB:STMS1H004436" gene complement(4830429..4831123) /locus_tag="STM4575" /db_xref="GeneID:1256101" CDS complement(4830429..4831118) /locus_tag="STM4575" /note="similar to E. coli putative transcriptional regulator (AAC76251.1); Blastp hit to AAC76251.1 (238 aa), 31% identity in aa 5 - 238" /codon_start=1 /transl_table=11 /product="putative outer membrane protein" /protein_id="NP_463431.1" /db_xref="GeneID:1256101" /translation="MKKLLIATSVIIGLSTSAQAVESTAVLKLTGVLTNGACIPELSD GGVVDFGTKAVSDLLPTQTNQLGYKDITLTIQCLAPAKVGWVATDNHGDSATTLTIDN ATFGGQNNRIPNYQLGLGTTADGIKIGAYGLSIDANNSTADGVKTKMVASNDSNPGVW ALASNEYVALTNTFPTRTTYSVGDGNGPVAFTTATFPIRVAAAIQGTDTLAITDNTTL DGQATFTLVYL" misc_feature complement(4830432..4831118) /locus_tag="STM4575" /note="hypothetical protein; Provisional; Region: PRK15303" /db_xref="CDD:185203" regulatory complement(4831118..4831123) /regulatory_class="ribosome_binding_site" /locus_tag="STM4575" /note="putative RBS for STM4575; RegulonDB:STMS1H004437" gene complement(4831431..4832460) /gene="lplA" /locus_tag="STM4576" /db_xref="GeneID:1256102" CDS complement(4831431..4832447) /gene="lplA" /locus_tag="STM4576" /EC_number="6.-.-.-" /note="similar to E. coli lipoate-protein ligase A (AAC77339.1); Blastp hit to AAC77339.1 (338 aa), 93% identity in aa 1 - 338" /codon_start=1 /transl_table=11 /product="lipoate-protein ligase A" /protein_id="NP_463432.1" /db_xref="GeneID:1256102" /translation="MTTLRLLISDSYDPWFNLAVEECIFRQMPATQRVLFLWRNADTV VIGRAQNPWKECNTRRMEEDNVRLARRSSGGGAVFHDLGNTCFTFMAGKPEYDKTIST HIVLAALNSLGVMADASGRNDLVVKTPDGDRKVSGSAYRETKDRGFHHGTLLLNADLS RLANYLNPDKKKLAAKGITSVRSRVANLTELLPGITHEQVCQAVTEAFFAHYGERVDA EVISPDKTPDLPNFAETFARQSSWEWNFGQAPAFSHLLDERFTWGGVELHFDVEKGVI TRAQAFTDSLNPAPLEALAERLQGCLYRADKLQETCEALLVDFPEQEKELRELSAWIA EAVR" misc_feature complement(4831434..4832447) /gene="lplA" /locus_tag="STM4576" /note="lipoate-protein ligase A; Provisional; Region: lplA; PRK03822" /db_xref="CDD:179655" misc_feature complement(order(4831986..4831988,4831992..4832000, 4832034..4832048,4832085..4832087,4832190..4832192, 4832196..4832198,4832208..4832222,4832235..4832237, 4832334..4832336)) /gene="lplA" /locus_tag="STM4576" /note="active site" /db_xref="CDD:319742" regulatory complement(4832455..4832460) /regulatory_class="ribosome_binding_site" /gene="lplA" /locus_tag="STM4576" /note="putative RBS for lplA; RegulonDB:STMS1H004438" gene complement(4832481..4833135) /gene="smp" /locus_tag="STM4577" /db_xref="GeneID:1256103" CDS complement(4832481..4833125) /gene="smp" /locus_tag="STM4577" /note="transcribed divergently from serB; similar to E. coli orf, hypothetical protein (AAC77340.1); Blastp hit to AAC77340.1 (214 aa), 90% identity in aa 1 - 214" /codon_start=1 /transl_table=11 /product="membrane protein" /protein_id="NP_463433.2" /db_xref="GeneID:1256103" /translation="MARAKLKFRLHRAVIVLFCLTLLVALMQGASWFSQNHQRQRNPQ LEELARTLARQVTLNIAPLMRSETPDENRINAVLRQLTQESRILDAGVYDEQGDLITR AGESVNVRDRLALDGKKAGSYFNQQIVEPIQGKNGPLGYLRLTLDTHTLATEAKQVDN TTNILRLMLLLSLAIGVVLTRTLLQGKRTRWQQSPFLLTASKPVPEEEEREEKE" misc_feature complement(4832511..4833125) /gene="smp" /locus_tag="STM4577" /note="YtjB family periplasmic protein; Region: PRK11246" /db_xref="CDD:236885" regulatory complement(4833130..4833135) /regulatory_class="ribosome_binding_site" /gene="smp" /locus_tag="STM4577" /note="putative RBS for smp; RegulonDB:STMS1H004439" gene 4833231..4834210 /gene="serB" /locus_tag="STM4578" /db_xref="GeneID:1256104" regulatory 4833231..4833236 /regulatory_class="ribosome_binding_site" /gene="serB" /locus_tag="STM4578" /note="putative RBS for serB; RegulonDB:STMS1H004440" CDS 4833242..4834210 /gene="serB" /locus_tag="STM4578" /EC_number="3.1.3.3" /note="similar to E. coli 3-phosphoserine phosphatase (AAC77341.1); Blastp hit to AAC77341.1 (322 aa), 93% identity in aa 1 - 322" /codon_start=1 /transl_table=11 /product="3-phosphoserine phosphatase" /protein_id="NP_463434.1" /db_xref="GeneID:1256104" /translation="MPNITWCDLPEDVSLWPGLPLSLSGDEVMPLDYHAGRSGWLLYG RGLDKQRLTQYQTKLGAAMVIVAAWCVEDYQVIRLAGSLTPRATRLAHEAQLDVAPLG KIPHLRTPGLLVMDMDSTAIQIECIDEIAKLAGTGEKVAEVTERAMRGELDFTASLRS RVATLKGADADILRQVRGNLPLMPGLTQLVLKLEALGWKIAIASGGFTFFADYLRDQL RLTAAVANELEIMDGKFTGHVIGDIVDAEYKANTLLRLAQEHDIPLAQTVAIGDGAND LPMIKAAGLGIAFHAKPKVNEKTEITIRHADLMGVFCILSGSMNQK" misc_feature 4833242..4834207 /gene="serB" /locus_tag="STM4578" /note="phosphoserine phosphatase; Provisional; Region: serB; PRK11133" /db_xref="CDD:182988" gene 4834284..4835676 /gene="radA" /locus_tag="STM4579" /db_xref="GeneID:1256105" regulatory 4834284..4834289 /regulatory_class="ribosome_binding_site" /gene="radA" /locus_tag="STM4579" /note="putative RBS for radA; RegulonDB:STMS1H004441" CDS 4834294..4835676 /gene="radA" /locus_tag="STM4579" /note="DNA repair protein; DNA repair protein RADA. (SW:RADA_SALTY)" /codon_start=1 /transl_table=11 /product="putative ATP-dependent protease" /protein_id="NP_463435.1" /db_xref="GeneID:1256105" /translation="MAKAPKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLAASPT VARNERLSGYAGSAGVSKVQKLSDISLEELPRFSTGFKEFDRVLGGGVVPGSAILIGG NPGAGKSTLLLQTLCKLAEQMKTLYVTGEESLQQVAMRAHRLGLPTANLNMLSETSIE QICLIAEEEQPKLMVIDSIQVMHMADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMV GHVTKDGSLAGPKVLEHCIDCSVLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQG LREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDHSMMANPRRVAVGLE QNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLAMVSSLRDRPLPQ DLVVFGEVGLAGEIRPVPSGQERISEAAKHGFRRAIVPAANVPKKPPEGMLVFGVKKL ADALSVFDDL" misc_feature 4834294..4835655 /gene="radA" /locus_tag="STM4579" /note="DNA repair protein RadA; Region: sms; TIGR00416" /db_xref="CDD:273067" gene 4835815..4837059 /gene="nadR" /locus_tag="STM4580" /db_xref="GeneID:1256106" regulatory 4835815..4835820 /regulatory_class="ribosome_binding_site" /gene="nadR" /locus_tag="STM4580" /note="putative RBS for nadR; RegulonDB:STMS1H004442" CDS 4835827..4837059 /gene="nadR" /locus_tag="STM4580" /note="contains regulator of nadAB transcription activity, regulator of PnuC activity, and NMN adenylyltransferase activity; transcriptional regulator NDAR. (SW:NADR_SALTY)" /codon_start=1 /transl_table=11 /product="trifunctional protein" /protein_id="NP_463436.5" /db_xref="GeneID:1256106" /translation="MSSFDYLKTAIKQQGCTLQQVADASGMTKGYLSQLLNAKIKSPS AQKLEALHRFLGLEFPRRQKNIGVVFGKFYPLHTGHIYLIQRACSQVDELHIIMGYDD TRDRGLFEDSAMSQQPTVSDRLRWLLQTFKYQKNIRIHAFNEEGMEPYPHGWDVWSNG IKAFMAEKGIQPSWIYTSEEADAPQYLEHLGIETVLVDPERTFMNISGAQIRENPFRY WEYIPTEVKPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGRDYVFSHLGGDE MALQYSDYDKIALGHAQYIDFAVKYANKVAFIDTDFVTTQAFCKKYEGREHPFVQALI DEYRFDLVILLENNTPWVADGLRSLGSSVDRKAFQNLLVEMLKENNIEFVHVKEADYD GRFLRCVELVKEMMGEQG" misc_feature 4835863..4837056 /gene="nadR" /locus_tag="STM4580" /note="multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR; Region: PRK08099" /db_xref="CDD:236151" gene complement(4837177..4838859) /gene="yjjK" /locus_tag="STM4581" /db_xref="GeneID:1256107" CDS complement(4837177..4838844) /gene="yjjK" /locus_tag="STM4581" /note="ABC superfamily (atp_bind); similar to E. coli putative ATP-binding component of a transport system (AAC77344.1); Blastp hit to AAC77344.1 (555 aa), 97% identity in aa 1 - 555" /codon_start=1 /transl_table=11 /product="putative transport protein" /protein_id="NP_463437.1" /db_xref="GeneID:1256107" /translation="MAQFVYTMHRVGKVVPPKRHILKNISLSFFPGAKIGVLGLNGAG KSTLLRIMAGLDKDIEGEARPQPGIKIGYLPQEPQLNPEHTVRESIEEAVSEVVNALK RLDEVYALYADPDADFDKLAAEQGRLEEIIQAHDGHNLNVQLERAADALRLPDWDAKV EKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLERFLHDFEGTVVAITHD RYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQRLAQEASAEAARRKSIEKELEWV RQGAKGRQSKGKARLARFEELNSVEYQKRNETNELFIPPGPRLGDKVIEVSNLRKSYG DRVLIDDLSFSVPKGAIVGIIGPNGAGKSTLFRMMSGQEQPDSGTITLGETVKLASVD QFRDAMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYVGRFNFKGVDQGKRVGELSGGER GRLHLAKLLQVGGNVLLLDEPTNDLDIETLRALENALLEFPGCAMVISHDRWFLDRIA THILDYQDEGKVEFFEGNFTEYEEYKKRTLGAEALEPKRIKYKRIAK" misc_feature complement(4837180..4838844) /gene="yjjK" /locus_tag="STM4581" /note="putative ABC transporter ATP-binding protein; Reviewed; Region: PRK11819" /db_xref="CDD:236992" regulatory complement(4838854..4838859) /regulatory_class="ribosome_binding_site" /gene="yjjK" /locus_tag="STM4581" /note="putative RBS for yjjK; RegulonDB:STMS1H004443" gene 4839017..4840990 /gene="slt" /locus_tag="STM4582" /db_xref="GeneID:1256108" CDS 4839017..4840990 /gene="slt" /locus_tag="STM4582" /EC_number="3.2.1.-" /note="similar to E. coli soluble lytic murein transglycosylase (AAC77345.1); Blastp hit to AAC77345.1 (654 aa), 89% identity in aa 1 - 654" /codon_start=1 /transl_table=11 /product="soluble lytic murein transglycosylase" /protein_id="NP_463438.3" /db_xref="GeneID:1256108" /translation="MMLHWITIEEVLVDRAKPFVWRLVAASVCLLTFCHLARADSLEE QRNRYAQIKQAWDNRQMDVVEQMMPGLKDYPLYPYLEYRKITDDLMNQPAIAVTQFVR ANPTLPPARTLQSRFVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWSTGQTEAA WQGAKDLWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQ MPAEYQTIASAIITLANDPNNVLIFARTTGATDFTRQMAEVAFASVARQDAENARLMI PSLVQAQKLNEEQTQALRDIVAWRLMGNDVTDAQAKWRDDAIMRSQSTSLIERRVRMA LGMGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGRDAEAKEILHALMQKRGFYP MVAAQRLGEEYTLKIDKAPANVNSALTQGPEMARVRELMYWNLDNTARSEWANLVKSR SKSEQAQLARYAFNQHWWDLSVQATIAGKLWDHLEERFPLAYNDLFTRYTRGKDISQS YAMAIARQESAWNPKVKSPVGASGLMQIMPGTATHTVKMFSIPDYRGPGQLLEPETNI NIGTSYLQYVYQQFGNNRIFASAAYNAGPGRVRTWLGNSAGRIDAVAFVESIPFSETR GYVKNVLAYDAYYRHFMGQKEALMSDSEWQRRY" misc_feature 4839053..4840987 /gene="slt" /locus_tag="STM4582" /note="lytic murein transglycosylase; Provisional; Region: PRK11619" /db_xref="CDD:183236" gene 4840893..4841374 /gene="trpR" /locus_tag="STM4583" /db_xref="GeneID:1256109" regulatory 4840893..4840901 /regulatory_class="minus_35_signal" /gene="trpR" /locus_tag="STM4583" /note="putative -35_signal for trpR; RegulonDB:STMLTH004681" regulatory 4840920..4840928 /regulatory_class="minus_10_signal" /gene="trpR" /locus_tag="STM4583" /note="putative -10_signal for trpR; RegulonDB:STMLTH004681" protein_bind 4841014..4841020 /gene="trpR" /locus_tag="STM4583" /note="putative binding site for TrpR, RegulonDB: STMS1H000378" /bound_moiety="TrpR" regulatory 4841038..4841043 /regulatory_class="ribosome_binding_site" /gene="trpR" /locus_tag="STM4583" /note="putative RBS for trpR; RegulonDB:STMS1H004444" CDS 4841048..4841374 /gene="trpR" /locus_tag="STM4583" /note="TrpR family; similar to E. coli regulator for trp operon and aroH; trp aporepressor (AAC77346.1); Blastp hit to AAC77346.1 (108 aa), 84% identity in aa 1 - 107" /codon_start=1 /transl_table=11 /product="transcriptional repressor for trp operon and aroH" /protein_id="NP_463439.1" /db_xref="GeneID:1256109" /translation="MTQHSPYSSAIAEQRNQEWLRFVELLRQAYAEDLHLPLLQLMLT PDEREALGTRVRIIEELLRGEMSQRELKTELGAGIATITRGSNSLKSAPVELRHWLEN VLLKNA" misc_feature 4841081..4841371 /gene="trpR" /locus_tag="STM4583" /note="Trp operon repressor [Transcription]; Region: TrpR; COG2973" /db_xref="CDD:442212" gene complement(4841476..4841991) /gene="yjjX" /locus_tag="STM4584" /db_xref="GeneID:1256110" CDS complement(4841476..4841991) /gene="yjjX" /locus_tag="STM4584" /note="similar to E. coli orf, hypothetical protein (AAC77347.1); Blastp hit to AAC77347.1 (173 aa), 88% identity in aa 4 - 173" /codon_start=1 /transl_table=11 /product="putative cytoplasmic protein" /protein_id="NP_463440.1" /db_xref="GeneID:1256110" /translation="MHQVISATTNPAKIQAILQAFEEIFGEGSCHITPVAVESGVPEQ PFGSEETRAGARNRVDNARRLHPQADFWVAIEAGIDDDATFSWVVIDNGVQRGEARSA TLPLPAVILDRVRQGEALGPVMSQYTGIDEIGRKEGAIGVFTAGKLTRSSVYYQAVIL ALSPFHNAVYR" misc_feature complement(4841479..4841991) /gene="yjjX" /locus_tag="STM4584" /note="non-canonical purine NTP phosphatase; Region: PRK05074" /db_xref="CDD:235336" gene 4842027..4842687 /gene="gpmB" /locus_tag="STM4585" /db_xref="GeneID:1256111" regulatory 4842027..4842032 /regulatory_class="ribosome_binding_site" /gene="gpmB" /locus_tag="STM4585" /note="putative RBS for gpmB; RegulonDB:STMS1H004445" CDS 4842040..4842687 /gene="gpmB" /locus_tag="STM4585" /note="similar to E. coli phosphoglyceromutase 2 (AAC77348.1); Blastp hit to AAC77348.1 (215 aa), 91% identity in aa 1 - 215" /codon_start=1 /transl_table=11 /product="putative phosphoglyceromutase 2" /protein_id="NP_463441.1" /db_xref="GeneID:1256111" /translation="MLQVYLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVGERAR SLGITHIISSDLGRTKRTAEIIAQACGCDITFDSRLRELDMGVLEKRQIDSLTEEEEG WRRQLVNGTQDGRIPGGESMQELSDRVHAALASCLELPQGSRPLLVSHGIALGCLVST ILGLPAWAERRLRLRNCSISRIDYQESQWLASGWVVETAGDVSHLDAPALDELQR" misc_feature 4842040..4842684 /gene="gpmB" /locus_tag="STM4585" /note="phosphoglycerate mutase GpmB; Region: PRK03482" /db_xref="CDD:179583" misc_feature order(4842061..4842066,4842211..4842213,4842487..4842492) /gene="gpmB" /locus_tag="STM4585" /note="catalytic core [active]" /db_xref="CDD:132718" gene complement(4842684..4843570) /gene="rob" /locus_tag="STM4586" /db_xref="GeneID:1256112" CDS complement(4842684..4843553) /gene="rob" /locus_tag="STM4586" /note="AraC/XylS family; similar to E. coli right origin-binding protein (AAC77349.1); Blastp hit to AAC77349.1 (289 aa), 92% identity in aa 1 - 289" /codon_start=1 /transl_table=11 /product="transcriptional regulator" /protein_id="NP_463442.1" /db_xref="GeneID:1256112" /translation="MDQAGIIRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKD VTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFSQTPAL YRRSSEWSAFGIRPPLRLGEFTVPEHQFVTLEDTPLLGVTQSYSCSLEQISDFRHEMR VQFWHDFLGHSPTIPPVLYGLNETRPSMEKDDEQEVFYTTALPQEQADGYVQSAHPVL LQGGEYVMFTYEGLGTGVQDFILTVYGTCMPMLNLTRRKGQDIERYYPSEDTKTGDRP INLRCEFLIPIRR" misc_feature complement(4842687..4843553) /gene="rob" /locus_tag="STM4586" /note="MDR efflux pump AcrAB transcriptional activator RobA; Region: PRK15121" /db_xref="CDD:185076" regulatory complement(4843565..4843570) /regulatory_class="ribosome_binding_site" /gene="rob" /locus_tag="STM4586" /note="putative RBS for rob; RegulonDB:STMS1H004446" gene 4843688..4844238 /gene="creA" /locus_tag="STM4587" /db_xref="GeneID:1256113" regulatory 4843688..4843696 /regulatory_class="minus_35_signal" /gene="creA" /locus_tag="STM4587" /note="putative -35_signal for creA; RegulonDB:STMLTH004682" regulatory 4843715..4843723 /regulatory_class="minus_10_signal" /gene="creA" /locus_tag="STM4587" /note="putative -10_signal for creA; RegulonDB:STMLTH004682" regulatory 4843754..4843759 /regulatory_class="ribosome_binding_site" /gene="creA" /locus_tag="STM4587" /note="putative RBS for creA; RegulonDB:STMS1H004447" CDS 4843765..4844238 /gene="creA" /locus_tag="STM4587" /note="similar to E. coli orf, hypothetical protein (AAC77350.1); Blastp hit to AAC77350.1 (157 aa), 89% identity in aa 1 - 157" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_463443.1" /db_xref="GeneID:1256113" /translation="MKYKSLVLFSILLLLGQSARAEQIGSVDTVFKMFGPDHKIVVEA FDDPDVKNVTCYVSRAKTGGIKGGLGLAEDTSDAAISCQQVGPIELSDKIKNGKAQGE VVFKKRTSLIFKSLQVVRFYDEKRNTLAYLAYSDKVVDGSPKNAISAVPVMPWRQ" misc_feature 4843765..4844235 /gene="creA" /locus_tag="STM4587" /note="protein CreA; Region: PRK10756" /db_xref="CDD:236752" gene 4844239..4844940 /gene="creB" /locus_tag="STM4588" /db_xref="GeneID:1256114" regulatory 4844239..4844244 /regulatory_class="ribosome_binding_site" /gene="creB" /locus_tag="STM4588" /note="putative RBS for creB; RegulonDB:STMS1H004448" CDS 4844251..4844940 /gene="creB" /locus_tag="STM4588" /note="OmpR family; similar to E. coli catabolic regulation response regulator (AAC77351.1); Blastp hit to AAC77351.1 (229 aa), 83% identity in aa 1 - 229" /codon_start=1 /transl_table=11 /product="response regulator in two-component regulatory system with CreC" /protein_id="NP_463444.1" /db_xref="GeneID:1256114" /translation="MQQPQVWLVEDEQGIADTLIYTLQLEGFTVELFARGLPALEKAR QQRPDAVILDVGLPDISGFELCRQLLERHPALPILFLTARSDEVDRLLGLEIGADDYV AKPFSPREVSARVRTLLRRVKKFAAPSPVVRTGHFELNEPAAQIAWFGTPLSLTRYEF LLLKTLLLSPERVYSRQQLMDIVWSDAQETFDRTVDTHIKTLRAKLRAINPELSPINT HRGMGYSLRSV" misc_feature 4844251..4844934 /gene="creB" /locus_tag="STM4588" /note="DNA-binding response regulator CreB; Provisional; Region: PRK11083" /db_xref="CDD:236838" gene 4844928..4846364 /gene="creC" /locus_tag="STM4589" /db_xref="GeneID:1256115" regulatory 4844928..4844933 /regulatory_class="ribosome_binding_site" /gene="creB" /locus_tag="STM4588" /note="putative RBS for creC; RegulonDB:STMS1H004449" CDS 4844940..4846364 /gene="creC" /locus_tag="STM4589" /EC_number="2.7.3.-" /note="senses catabolite repression; similar to E. coli catabolite repression sensor kinase for PhoB; alternative sensor for pho regulon (AAC77352.1); Blastp hit to AAC77352.1 (474 aa), 80% identity in aa 1 - 474" /codon_start=1 /transl_table=11 /product="sensory kinase (alternative) in two-component regulatory system with CreB (or alternatively PhoB)" /protein_id="NP_463445.1" /db_xref="GeneID:1256115" /translation="MRIGMRLLLGYFLIVAVAAVFVLSIFVQEIKPGVRRATEGTLID TATLLAALARDDLLSGNPTDGQLAKAFAQLQHRPFRANISGIVKVRNEYHIYMTDAQG KVLFDSENKAVGQDYSRWNDVWLTLRGQYGARSTAKDAADPNSTVMYVAAPIISDGRI IGVLTVGKPNAAMAPVIKRSERRILWASAVLLGIALAIGAGMVWWINRSIARLTRYAD SVTENRPLALPALGSSELRKLAQALESMRIKLEGKNEIEQYVYALTHELKSPLAAIRG AAEILREGPPADVVTRFTENILAQNTRMQALVETLLRQARLENRQDIPLAPVAVDELF TQLSEARSIQLAAKKITLTLRPSSLVVVADAELLAQALGNVLDNAIDFTPENGVITLS AQPMGEKAILQVTDSGCGIPDFALPRIFDRFYSLPRENGRKSSGLGLAFVSEAARLLN GEVTLCNRPEGGVLASLTLHRHFT" misc_feature 4844940..4846358 /gene="creC" /locus_tag="STM4589" /note="sensory histidine kinase CreC; Provisional; Region: PRK11100" /db_xref="CDD:236846" gene 4846410..4847771 /gene="creD" /locus_tag="STM4590" /db_xref="GeneID:1256116" regulatory 4846410..4846415 /regulatory_class="ribosome_binding_site" /gene="creD" /locus_tag="STM4590" /note="putative RBS for creD; RegulonDB:STMS1H004450" CDS 4846422..4847771 /gene="creD" /locus_tag="STM4590" /note="similar to E. coli tolerance to colicin E2 (AAC77353.1); Blastp hit to AAC77353.1 (450 aa), 73% identity in aa 1 - 450" /codon_start=1 /transl_table=11 /product="tolerance to colicin E2 protein" /protein_id="NP_463446.1" /db_xref="GeneID:1256116" /translation="MLKSPLLWKMITLGGAMILLLIPLMMVRHTIVERADYRSHVEAA IRQSTSGPQKVVGPLVAIPVTELYTVLEEEKEVQYKRSYLYFWLPESLLVEGNQNVEA RKIGIYQGQVWHTDMAIKAEFDVARLHELNRPNITLGKPFIVVGVGDARGISAVKAPQ VNGETLTVEPGTGLPESREGIHIPLPDSQWATRNLTLDMSLNLSGTGSFSLVPVGRSS EMTLASNWPHPNFVGDFLPGKREISGSGFQAQWQTSRFATNLGEQFADAQKVDWDNLP AFSVAVSTPADQYQLTDRATKYAILLITLTFMAFFVFETLTGQRLHPMQYLLVGLSLV MFYLLLLALSEHIGFTPAWIAASLVGALMNSVYLQAVLKGWRNSVLFTLALLALDGVM WGLLRSEDSSLLLGTGVLLLALGGVMFLTRHLDWYSLSCQQRKSLPPVKDDELRLWK" misc_feature 4846422..4847705 /gene="creD" /locus_tag="STM4590" /note="cell envelope integrity protein CreD; Region: PRK11715" /db_xref="CDD:236960" gene complement(4847829..4848922) /gene="sthE" /locus_tag="STM4591" /db_xref="GeneID:1256117" CDS complement(4847829..4848914) /gene="sthE" /locus_tag="STM4591" /codon_start=1 /transl_table=11 /product="putative major fimbrial subunit" /protein_id="NP_463447.1" /db_xref="GeneID:1256117" /translation="MRRLYLALILLFAYSGHSYASCKRSGNEGAITITPPSQLVVDSH AYTAGEVLWQSGWVSTSEVTMDGCSRDYKVGFLYEPGSAQSNTSATINANDGNNTPVF STGISGVGVAIKTQTNAGPYDNVMPIDNTYHNGDGNKTHHAMAPAYNVELVALGGPIT SGTATFQSPLARVSFRDSATEDSGGDILTHLYLGNTQLIMKAMGCRVETPAITVDLGS VNLGSFANSQTAGTGEQDILLTCEQGTAISASLSAQPASGNNPDNSVIQLSNASAPTS ATGVGVQLGIQAPDAGFFTGSLPINQKIDLFTHTITTNADGSQTVNGGTMNMSTTLKI SARYYKTAATVTAGQANATATLNLTYN" misc_feature complement(4847832..4848911) /gene="sthE" /locus_tag="STM4591" /note="type 1 fimbrial protein; Region: PRK15292" /db_xref="CDD:237935" regulatory complement(4848917..4848922) /regulatory_class="ribosome_binding_site" /gene="sthE" /locus_tag="STM4591" /note="putative RBS for sthE; RegulonDB:STMS1H004451" gene complement(4848955..4849527) /gene="sthD" /locus_tag="STM4592" /db_xref="GeneID:1256118" CDS complement(4848955..4849512) /gene="sthD" /locus_tag="STM4592" /note="similar to E. coli fimbrial morphology (AAC77275.1); Blastp hit to AAC77275.1 (167 aa), 31% identity in aa 18 - 166" /codon_start=1 /transl_table=11 /product="putative fimbrial subunit" /protein_id="NP_463448.1" /db_xref="GeneID:1256118" /translation="MNMNRFAALAALLTFTGLALWSPSISAAYNTADAVGINVTGLIY ADPCTVTVPDTLSLGQYARADIAVAGGNTATIPFTIKMTNCPATTTKAAISFNGVPYP DPNYASAIYANSAANPAQDLGLQLFNLDGKSLVNLANNVTYTVDINSNTHEANLPVAA RMYTPHGKVTAGDFTSVVTITIAWQ" misc_feature complement(4848958..4849512) /gene="sthD" /locus_tag="STM4592" /note="fimbrial protein SthD; Region: PRK15293" /db_xref="CDD:185193" regulatory complement(4849522..4849527) /regulatory_class="ribosome_binding_site" /gene="sthD" /locus_tag="STM4592" /note="putative RBS for sthD; RegulonDB:STMS1H004452" gene complement(4849530..4852074) /gene="sthB" /locus_tag="STM4593" /db_xref="GeneID:1256119" CDS complement(4849530..4852067) /gene="sthB" /locus_tag="STM4593" /note="similar to E. coli putative outer membrane protein, export function (AAC73634.1); Blastp hit to AAC73634.1 (867 aa), 38% identity in aa 35 - 862" /codon_start=1 /transl_table=11 /product="putative fimbrial usher protein" /protein_id="NP_463449.1" /db_xref="GeneID:1256119" /translation="MQFSRVEPRSQLALSFLFICCSIKPALAHDHFNPLSLENDEPGV ENVDLSVFEKGGQAEGTYNVDIYINNTSVETKNIAFKNKKSADNKLSLQPCLSVEQLK QWGVKTENFPELKNDPNGCTDLSLLAGAVAKFNVIGNRLDLAIPQIALIADPREFVPT SEWDEGINAFLLNYSFTGSQDHDIDENRTENSEYANLRPGINIGAWRFRNYSTWNHDS DGQNSWDSAYTYVSRDIEFLKGQLIAGENNTPADVFDSISFKGVQISSDDDMLPDSMK GFAPVIRGVAKSSAQVTVEQNGYTIYKTNVPAGPFAINDLYPTGGSGDLYVTIKESDG SEQHFIVPYASVPVLQREGHLKYDLTVGRTRSSDTHSAQQNFAELTALYGLAGGITAY GGIESTLSNDVYHAALIGTGLNLGDLGALSLDVTNSWSKIKAGDVVSDTLTGQSWRIR YSKDIQSTGTNFTVAGYRYSTKDYYALEDVLDTYSDNSHYDHVRNRTDLSLSQDIIYG SISLTLYNEDYWNDTHTTSLGIGYNNTWHNVSYGINYSYTLNADNSQDEDDDTEDSND QQISINISIPLDAFMPSTYATYNMNSAKDGDTTHTVGLNGTALAQKNLSWSVQEGYSS QEKATSGNVSATYNGTYADINGGYSYDNHMRRLNYGVQVGVLLHRNGLTLSQPMDDTI ILVKAPGAAGVPVNNETGVDTDFRGYAVVPYASPYHRNEVSLDTTGIRKNIELIDTSK TLVPTRGAVVRAEYKTNIGYKALMVLTRINNLPVPFGATVSSLTKPDNHSSFVGDAGQ AWLTGLEKQGRLLVKWGPTAADQCQVSYRIPSSPSASGVEILHEQCQ" misc_feature complement(4849533..4852067) /gene="sthB" /locus_tag="STM4593" /note="fimbrial outer membrane usher protein; Region: PRK15294" /db_xref="CDD:185194" regulatory complement(4852069..4852074) /regulatory_class="ribosome_binding_site" /gene="sthB" /locus_tag="STM4593" /note="putative RBS for sthB; RegulonDB:STMS1H004453" gene complement(4852113..4852796) /gene="sthA" /locus_tag="STM4594" /db_xref="GeneID:1256120" CDS complement(4852113..4852796) /gene="sthA" /locus_tag="STM4594" /note="similar to E. coli periplasmic chaperone, required for type 1 fimbriae (AAC77272.1); Blastp hit to AAC77272.1 (241 aa), 33% identity in aa 26 - 234" /codon_start=1 /transl_table=11 /product="putative fimbrial chaparone protein" /protein_id="NP_463450.1" /db_xref="GeneID:1256120" /translation="MKHIKKSVLAVLLTSHVAHASIVVGGTRLVFDGNNDESSINVEN KDSKANLVQSWLSVADPQVTNKQAFIITPPLFRLDAGQKNSIRVIRSGAPLPADRESM YWLNIKGIPSIDDNASANRVEISINTQIKLIYRPPALTKSTPDSQSQQLKWQTAGDVI TVNNPTPYYMNFASVTLNSHEVKSATFVPPKSSASFKLGSTAAPHGTVTWRLISDYGM SLEPHSGSF" misc_feature complement(4852116..4852775) /gene="sthA" /locus_tag="STM4594" /note="fimbrial assembly chaperone; Region: PRK15295" /db_xref="CDD:237936" gene complement(4852867..4853418) /locus_tag="STM4595" /db_xref="GeneID:1256121" CDS complement(4852867..4853412) /locus_tag="STM4595" /note="similar to E. coli fimbrial morphology (AAC77274.1); Blastp hit to AAC77274.1 (176 aa), 29% identity in aa 1 - 176" /codon_start=1 /transl_table=11 /product="putative fimbrial chaparone protein" /protein_id="NP_463451.1" /db_xref="GeneID:1256121" /translation="MFNKKIIILAMLTAVASTPVFAQNTITFNGKIYDQACTVQVNGS TDTTIDLGNYSKERIAEKGATTDYVPFTVSLVSCPEAGTGVPTQAMFRFHGATDDSNP TYFKNADEGSETGAAGVGISIQNASHSDVTDNTDDAAVNLPTDGSTADFTYYAAMAND GSATVTGGDVSTQVTYTVSYQ" misc_feature complement(4852870..4853412) /locus_tag="STM4595" /note="fimbrial protein SthA; Region: PRK15296" /db_xref="CDD:185196" regulatory complement(4853413..4853418) /regulatory_class="ribosome_binding_site" /locus_tag="STM4595" /note="putative RBS for STM4595; RegulonDB:STMS1H004454" gene complement(4853751..4854427) /locus_tag="STM4596" /db_xref="GeneID:1256122" CDS complement(4853751..4854422) /locus_tag="STM4596" /note="similar to E. coli orf, hypothetical protein (AAC73478.1); Blastp hit to AAC73478.1 (222 aa), 31% identity in aa 55 - 222" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463452.1" /db_xref="GeneID:1256122" /translation="MKQLNGGNVYRPTGKEKNLQAILNIHRHVIQNISPVTITAGKTL DIKIDNQSHILLITKGAIKVCRRIDSIVMGCGVSPMILGLVDAYADLYQLEENSDVFF IAETTCEYYPVPVKDFVEIADEKHLWRDISNILMYRIAFMTNRDRNLIGQDAYSQIKA LLLELWSYPESSRFEINAQNFIQQRTGLSRSRIMQVLSELKAGDYIKILHGRLLELRN LPVSF" misc_feature complement(4853754..4854275) /locus_tag="STM4596" /note="hydrogen peroxide resistance inhibitor IprA; Region: PRK11832" /db_xref="CDD:183332" misc_feature complement(4853760..4853963) /locus_tag="STM4596" /note="Winged helix-turn-helix DNA binding; Region: HTH_46; pfam15977" /db_xref="CDD:435049" regulatory complement(4854422..4854427) /regulatory_class="ribosome_binding_site" /locus_tag="STM4596" /note="putative RBS for STM4596; RegulonDB:STMS1H004455" gene complement(4854807..4855127) /locus_tag="STM4597" /db_xref="GeneID:1256123" CDS complement(4854807..4855121) /locus_tag="STM4597" /codon_start=1 /transl_table=11 /product="putative periplasmic protein" /protein_id="NP_463453.1" /db_xref="GeneID:1256123" /translation="MKKSPLCCYLFCAAMSASSAALAATAPVSAGVIHFKGQIVEYGC NLAPHDRNIEVSCLRNNIPHLQTVATPSGNAISLMNGIATVRHVSLKDHPEIQSLIVQ YR" misc_feature complement(<4854957..4855121) /locus_tag="STM4597" /note="Pilin (type 1 fimbrial protein) [Cell motility]; Region: FimA; COG3539" /db_xref="CDD:442760" regulatory complement(4855122..4855127) /regulatory_class="ribosome_binding_site" /locus_tag="STM4597" /note="putative RBS for STM4597; RegulonDB:STMS1H004456" gene complement(4855388..4856211) /gene="arcA" /locus_tag="STM4598" /db_xref="GeneID:1256124" CDS complement(4855388..4856104) /gene="arcA" /locus_tag="STM4598" /note="regulates genes in aerobic pathways; similar to E. coli negative response regulator of genes in aerobic pathways, (sensors, ArcB and CpxA) (AAC77354.1); Blastp hit to AAC77354.1 (238 aa), 99% identity in aa 1 - 238" /codon_start=1 /transl_table=11 /product="response regulator (OmpR family) in two-component regulatory system with ArcB (or CpxA)" /protein_id="NP_463454.1" /db_xref="GeneID:1256124" /translation="MQTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS EYDINLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYIT KPFNPRELTIRARNLLSRTMNLGTVSEERRSVESYKFNGWELDINSRSLIGPDGEQYK LPRSEFRAMLHFCENPGKIQSRAELLKKMTGRELKPHDRTVDVTIRRIRKHFESTPDT PEIIATIHGEGYRFCGDLQD" misc_feature complement(4855394..4856104) /gene="arcA" /locus_tag="STM4598" /note="two-component response regulator; Provisional; Region: PRK11173" /db_xref="CDD:183013" regulatory complement(4856111..4856116) /regulatory_class="ribosome_binding_site" /gene="arcA" /locus_tag="STM4598" /note="putative RBS for arcA; RegulonDB:STMS1H004457" regulatory complement(4856185..4856193) /regulatory_class="minus_10_signal" /gene="arcA" /locus_tag="STM4598" /note="putative -10_signal for arcA; RegulonDB:STMLTH004683" gene 4856190..4856340 /gene="yjjY" /locus_tag="STM4599" /db_xref="GeneID:1256125" regulatory 4856190..4856195 /regulatory_class="ribosome_binding_site" /gene="yjjY" /locus_tag="STM4599" /note="putative RBS for yjjY; RegulonDB:STMS1H004458" CDS 4856200..4856340 /gene="yjjY" /locus_tag="STM4599" /note="similar to E. coli orf, hypothetical protein (AAC77355.1); Blastp hit to AAC77355.1 (46 aa), 97% identity in aa 1 - 46" /codon_start=1 /transl_table=11 /product="putative inner membrane protein" /protein_id="NP_463455.1" /db_xref="GeneID:1256125" /translation="MTKVRNCVLDALSINVNNIISLVVGTFPLDPTVSKTAVILTILT AT" regulatory complement(4856203..4856211) /regulatory_class="minus_35_signal" /gene="arcA" /locus_tag="STM4598" /note="putative -35_signal for arcA; RegulonDB:STMLTH004683" gene 4856740..4857426 /gene="lasT" /locus_tag="STM4600" /db_xref="GeneID:1256126" CDS 4856740..4857426 /gene="lasT" /locus_tag="STM4600" /EC_number="2.1.1.-" /note="similar to E. coli orf, hypothetical protein (AAC77356.1); Blastp hit to AAC77356.1 (228 aa), 82% identity in aa 1 - 228" /codon_start=1 /transl_table=11 /product="putative tRNA/tRNA methyltransferase" /protein_id="NP_463456.1" /db_xref="GeneID:1256126" /translation="MRVTIVLVAPARAENIGAAARAMKTMGFTDLRIVDSQAHLEPAT RWVAHGSGDIIDNIEVFHTLADALHDVDFTVATTARSRAKFHYYASHAELVPLLQEKS RWMRHAALVFGREDSGLTNDELALADVLTGVPMAADYPSLNLGQAVMVYCYQLAGLMQ QTTESVDIADESQLQALRARLLRLLTTLEAADDHKLTDWLQQRIGLLGQRDTVMLHRL VHDIEKKLTK" misc_feature 4856740..4857423 /gene="lasT" /locus_tag="STM4600" /note="putative RNA methyltransferase; Provisional; Region: PRK10433" /db_xref="CDD:236693" misc_feature order(4856800..4856802,4856809..4856820,4857010..4857015, 4857082..4857084,4857139..4857147,4857160..4857168, 4857172..4857177,4857184..4857189,4857196..4857201) /gene="lasT" /locus_tag="STM4600" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:349966" misc_feature order(4856968..4856976,4857073..4857084,4857091..4857093, 4857130..4857138,4857160..4857165,4857169..4857171, 4857178..4857180) /gene="lasT" /locus_tag="STM4600" /note="SAM binding site [chemical binding]; other site" /db_xref="CDD:349966" CONTIG join(AE006468.2:1..4857450)