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LOCUS NP_459473 1120 aa linear CON 08-SEP-2022 enterica subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_459473 VERSION NP_459473.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1120) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1120) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1120) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1120) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19432. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1120 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1120 /product="putative small-conductance mechanosensitive channel" /calculated_mol_wt=126617 Region 7..1120 /region_name="PRK11281" /note="mechanosensitive channel MscK" /db_xref="CDD:236892" CDS 1..1120 /gene="aefA" /locus_tag="STM0478" /coded_by="NC_003197.2:534529..537891" /note="similar to E. coli putative alpha helix protein (AAC73567.1); Blastp hit to AAC73567.1 (1120 aa), 89% identity in aa 1 - 1117" /transl_table=11 /db_xref="GeneID:1251998" CONTIG join(WP_000178249.1:1..1120) ORIGIN 1 mtmlqlykrs qhfvfitisv liillscqsl afargqtngd lpskadvqnq ldtlnkqkdl 61 saqdklvqqd lidtlatlek iervkeetvq lrqkvaqape kmrqataaln alsdvdndde 121 mrktlsalsl rqlelrvaqv lddlqnsqnd laaynsqlvs lqtqpervqn amytasqqiq 181 qirnrldgnn vgeaalrpsq qvllqaqqal lnaqidqqrk slegntvlqd tlqkqrdyvt 241 ansnrlehql qllqeavnsk rltltektaq eaispdetar iqanplvkqe ldinhqlsqr 301 livatengnm lmqqnikvkn wldralqser nikeqiavlk gslllsrily qqqqtlpsad 361 eledmtnria dlrleqfein qqrdalfqsd afvdkleegh tsevndevhd allqvvemrr 421 elldqlnkql gnqlmmainl qvnqqqlmsv sknlkailtq qifwvnsnrp mdwdwlkafp 481 qtlkeqfsam kitvnwqkaw pavfiaflag lpllliagli rwrlkwlkay qqklaaavgs 541 lrndsqlntp kailidlira lpvcliilal glilltmqln isdllwafsk klamfwlvfg 601 lcwkvlekeg vairhfgmpa qltshwrrqi vrislallpl hfwsvvaels plnlmddvlg 661 qaviflnllv itllvwplcr eswrdkeshg irlvtvtils iipvalmvlt atgyfyttlr 721 lagrwietvy lviiwnllyq tvlrglsvaa rriawrrala rrqnlvkega egaepqeept 781 ialeqinqqt lritmllmla lfgvmfwaiw sdlitvfsyl dsitlwhyng seagaavvks 841 vtmgsllfai iaamvawali rnlpgllevl vlsrlnmrqg asyaittiln yviiavgamt 901 vfgslgvswd klqwlaaals vglgfglqei fgnfvsglii lferpvrigd tvtigtysgt 961 vskiriratt itdfdrkevi ipnkafvter linwslsdtt trlvirlgva ygsdlekvkr 1021 vllqaamehp kvmhdpepav ffttfgastl dhelrlyvre lrdrshtvde lnraidrlcr 1081 endiniafnq levhlhnakg devtevkrdl nggdlaptas