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LOCUS NP_460186 1148 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_460186 VERSION NP_460186.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1148) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1148) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1148) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1148) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20145. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1148 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1148 /product="transcription-repair coupling factor" /calculated_mol_wt=129778 Region 1..1147 /region_name="PRK10689" /note="transcription-repair coupling factor; Provisional" /db_xref="CDD:182649" CDS 1..1148 /gene="mfd" /locus_tag="STM1216" /coded_by="complement(NC_003197.2:1298885..1302331)" /note="similar to E. coli transcription-repair coupling factor; mutation frequency decline (AAC74198.1); Blastp hit to AAC74198.1 (1148 aa), 95% identity in aa 1 - 1148" /transl_table=11 /db_xref="GeneID:1252734" CONTIG join(WP_001114323.1:1..1148) ORIGIN 1 mpekqrytlp tkagdqrqlg eltgaacatl vaeiaerhag pvvliapdmq nalrlhdeir 61 qftdqmvmnl adwetlpyds fsphqeiiss rlstlyqlps mqrgvlivpv ntlmqrvcph 121 sylhghalvm kkgqrlsrda lraqldsagy rhvdqvmehg eyatrgalld lfpmgseqpy 181 rldffddeid slrlfdadtq rtleeveain llpahefptd kaaielfrsq wrdtfevkrd 241 aehiyqqvsk gtlpagieyw qplffseplp plfsyfpant lvvntgslet saerfqadtl 301 arfenrgvdp mrpllppeal wlrvdelfse lkrwprlqlk tdhlpekaan tnlgfqklpd 361 laiqaqqkap ldalrkfles fsgpvifsve segrrealge llarikiapk rilrldeaqd 421 agrylmigaa ehgfidtqrn lalicesdll gervarrrld srrtinpdtl irnlaelhvg 481 qpvvhlehgv gryagmttle aggikgeylm ltyandakly vpvsslhlis ryaggaeesa 541 plhklggdaw srarqkaaek vrdvaaelld iyaqraakeg fafkhdreqy qlfcdsfpfe 601 ttpdqaqain avlsdmcqpl amdrlvcgdv gfgktevamr aaflavenhk qvavlvpttl 661 laqqhydnfr drfanwpvri emlsrfrsak eqtqilaeaa egkidiligt hkllqsdvkl 721 rdlgllivde ehrfgvrhke rikamradvd iltltatpip rtlnmamsgm rdlsiiatpp 781 arrlavktfv reydslvvre ailreilrgg qvyylyndve niqkaaerla elvpeariai 841 ghgqmrerel ervmndfhhq rfnvlvctti ietgidipta ntiiieradh fglaqlhqlr 901 grvgrshhqa yawlltphpk amttdaqkrl eaiasledlg agfalathdl eirgagellg 961 eeqsgsmeti gfslymelle navdalkagr epsledltsq qtevelrmps llpddfipdv 1021 ntrlsfykri asaknenele eikvelidrf gllpdparnl ldiarlrqqa qklgirkleg 1081 nekggtiefa eknhvdpawl igllqkqpqh frldgptrlk fiqdlserkt ridwvrqfmq 1141 qleenaia