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LOCUS NP_460716 509 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_460716 VERSION NP_460716.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 509) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 509) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 509) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 509) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20675. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..509 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..509 /product="putative TPR repeat protein" /calculated_mol_wt=57705 Region 19..233 /region_name="TPR" /note="TPR repeat [General function prediction only]; COG0790" /db_xref="CDD:440553" Region 70..99 /region_name="SLR repeat" /note="SLR repeat [structural motif]" /db_xref="CDD:276807" Region 108..135 /region_name="SLR repeat" /note="SLR repeat [structural motif]" /db_xref="CDD:276807" Region 142..182 /region_name="SLR repeat" /note="SLR repeat [structural motif]" /db_xref="CDD:276807" Region 189..218 /region_name="SLR repeat" /note="SLR repeat [structural motif]" /db_xref="CDD:276807" Region 214..451 /region_name="TPR" /note="TPR repeat [General function prediction only]; COG0790" /db_xref="CDD:440553" Region 295..324 /region_name="SLR repeat" /note="SLR repeat [structural motif]" /db_xref="CDD:276807" Region 331..360 /region_name="SLR repeat" /note="SLR repeat [structural motif]" /db_xref="CDD:276807" Region 367..396 /region_name="SLR repeat" /note="SLR repeat [structural motif]" /db_xref="CDD:276807" CDS 1..509 /locus_tag="STM1760" /coded_by="complement(NC_003197.2:1853720..1855249)" /note="similar to E. coli orf, hypothetical protein (AAC73745.1); Blastp hit to AAC73745.1 (327 aa), 31% identity in aa 16 - 305, 33% identity in aa 29 - 273, 32% identity in aa 19 - 307, 33% identity in aa 47 - 320, 30-1073758628dentity in aa 22 - 312, 29% identity in aa 15 - 312, 34-1073758654dentity in aa 12 - 166" /transl_table=11 /db_xref="GeneID:1253279" CONTIG join(WP_001212712.1:1..509) ORIGIN 1 mrfssifkii ilnifiskma haavceeryp adseecqyvq eleqkaeqgd esaqfslgsw 61 yaegryvkpd yklaikwlek agkqgsdfsy filgyhynyg enfplsrqka lewyrkaael 121 gdsstqeilg daymygdgfp qntqlalewy rkaasptnda gvvrgqgsas saqfklgvmy 181 ahgqgvpqdy qqtailmrka aenmyypaql ylgvayfyge gvpqdyrqav ywlnegipgs 241 ytpghiplna lydkahpadr vhsqtwyrkt aqrvmakvqy nfgvwyyngy hllkdhnlal 301 ewyrraaaqg laeaqdaigv mfmqgegvsq dyqqalawyr kaarqglpaa qthlgimsaf 361 grgvaqsdrq aiawyrkaak qdfakaqyql gvaystgrgv pensrnalkw ylkaaeqgft 421 paqsalgeiy ahgrqgvpkd nkqayiwyym asmytekskd dcsaliaern rlkgtltpdq 481 lsetyaafnl iwrkidqske akkiarkky