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LOCUS NP_462249 297 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_462249 VERSION NP_462249.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 297) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 297) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 297) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 297) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL22208. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..297 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..297 /product="N-acetylneuraminate lyase" /EC_number="4.1.3.3" /calculated_mol_wt=32324 Region 2..295 /region_name="PRK04147" /note="N-acetylneuraminate lyase; Provisional" /db_xref="CDD:179749" Site order(11,43,46..48,137,165) /site_type="inhibition" /note="inhibitor site" /db_xref="CDD:188641" Site order(43,46..48,137,165,206) /site_type="active" /db_xref="CDD:188641" Site order(47,52..53,84..85,109..110,117,121,272..273) /site_type="other" /note="dimer interface [polypeptide binding]" /db_xref="CDD:188641" Site 165 /site_type="active" /note="catalytic residue [active]" /db_xref="CDD:188641" CDS 1..297 /gene="nanA" /locus_tag="STM3339" /coded_by="complement(NC_003197.2:3508126..3509019)" /note="aldolase; similar to E. coli N-acetylneuraminate lyase (aldolase); catabolism of sialic acid; not K12? (AAC76257.1); Blastp hit to AAC76257.1 (297 aa), 90% identity in aa 1 - 296" /transl_table=11 /db_xref="GeneID:1254862" CONTIG join(WP_001029667.1:1..297) ORIGIN 1 makalqgvma alltpfdhqq qldseslrrl vrfnigqgid glyvggstge afvqslaere 61 qvleivaeea kgkitliahv gtvstaesqq lasaakrygf davsavtpfy ypfsfeehcd 121 hyraiidsad glpmvvynip alsgvkltld qintlvtlpg vsalkqtsgd lfqmeqirra 181 hpdlvlyngy deifasglla gadggigsty nimgwryqgi vqalregdva kaqrlqtecn 241 kvidlliktg vfrglktvlh ymdvvsvplc rkpfapvdek ylpalkalaq qlmeeka