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LOCUS NP_459180 848 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_459180 VERSION NP_459180.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 848) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 848) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 848) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 848) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19139. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..848 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..848 /product="putative fimbrial usher" /calculated_mol_wt=93797 Region 1..848 /region_name="PRK15298" /note="fimbrial outer membrane usher protein" /db_xref="CDD:185198" CDS 1..848 /gene="stiC" /locus_tag="STM0175" /coded_by="complement(NC_003197.2:205079..207625)" /note="similar to E. coli putative outer membrane protein (AAC76178.1); Blastp hit to AAC76178.1 (838 aa), 39% identity in aa 20 - 558, 34% identity in aa 493 - 837" /transl_table=11 /db_xref="GeneID:1251693" CONTIG join(WP_001231776.1:1..848) ORIGIN 1 mrkrqhrvfy lsrcavcial gstfthvawa rdyfnpafie nhgqanrtsv dlstfdndks 61 qlpgtyyvti ninkteigar nvdfqlatls dgqqalqgcl rlqelkdngv ktdlfptles 121 ekgcvdlsvi pgasqrfdfq qqalsvsipq lyiannargy vppekwqegi talmlnysfs 181 gykeygssed sddaeskyla lqpgfnlgpw rfrnysnwss nngengswns vynylqrdii 241 alksqftagd sntpsdvfds vpfrglqlts ddqmqpnsqr gyaptirgia rsnaqvivrq 301 ngyiayqtav spgefeindm fptgsngdyd vtvkeadgse qhfivpyssl pilqrtgrak 361 ysvtvgkyrd ynnhalddfg qatllyglpw gitlyggsqi agdkyqsvaf gvgqnmqmlg 421 aisldgiwsh akfddgrkei gqswhvrysk gvvstgttfs lagyryasen ynslsevinp 481 dddfydnygk rhnrfeasvn qqisntlgsl tlswvkedyw hsaqqmesls asynnswgpv 541 sytlsysynk ntyqyrsdnd dddndddryn qndrlftlsl hvpftvfdsr lyasymlntr 601 khdatvnstt lsgtalrdrn lnwslqqshs tqdgdsggvn asykgtyanl nagynqspds 661 qqvsygisgg ilahengitl sqpitgaail ikapgasgvs venqtgvatd frgytvipnv 721 tpyyrydisl dsstfadnvd iplnnqtvyp trnavvraay dthkgyrvll tltrsngepv 781 pfgatasvdg qdanlasivg dkgqvflsgl peeglllvnw gsascradyr ldisknmngi 841 vmanavcq