Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_460122 847 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_460122 VERSION NP_460122.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 847) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 847) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 847) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 847) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20081. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..847 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..847 /product="membrane glycosyltransferase" /calculated_mol_wt=96970 Region 128..816 /region_name="MdoH" /note="Membrane glycosyltransferase [Cell wall/membrane/envelope biogenesis, Carbohydrate transport and metabolism]; COG2943" /db_xref="CDD:442186" CDS 1..847 /gene="mdoH" /locus_tag="STM1151" /coded_by="NC_003197.2:1237935..1240478" /note="synthesis of membrane-derived oligosaccharide (MDO)/synthesis of OPGs (osmoregulated periplasmic glucans); similar to E. coli membrane glycosyltransferase; synthesis of membrane-derived oligosaccharide (MDO) (AAC74133.1); Blastp hit to AAC74133.1 (847 aa), 94% identity in aa 1 - 840" /transl_table=11 /db_xref="GeneID:1252669" CONTIG join(WP_001044610.1:1..847) ORIGIN 1 mnktteyida lllserekaa lpktdiravh qaldaehrty sreddspqgs vkarlehawp 61 dslakgqlik ddegrdqlqa mpkatrssmf pdpwrtnpvg rfwdrlrgrd vtpryvsrlt 121 keeqaseqkw rtvgtirryi lliltlaqtv vatwymktil pyqgwalinp mdmvgqdiwv 181 sfmqllpyml qtgililfav lfcwvsagfw talmgflqll igrdkysisa stvgdeplnp 241 ehrtalimpi cnedvsrvfa glratwesvk atgnaahfdv yilsdsynpd icvaeqkawm 301 eliaevqgeg qifyrrrrrr mkrksgnidd fcrrwgnqys ymvvldadsv msgeclsglv 361 rlmeanpnag iiqsspkasg mdtlyarcqq fatrvygplf taglhfwqlg eshywghnai 421 irvkpfiehc alaplpgegs fagsilshdf veaalmrrag wgvwiaydlp gsyeelppnl 481 ldelkrdrrw chgnlmnfrl flvkgmhpvh ravfltgvms ylsaplwfmf lalstalqvv 541 haltepqyfl qprqlfpvwp qwrpelaial fastmvllfl pkllsimliw ckgtkeyggf 601 wrvtlsllle vlfsvllapv rmlfhtvfvv saflgwevvw nspqrdddst pwgeafmrhg 661 sqlllglvwa vgmawldlrf lfwlapivfs lilspfvsvi ssrstvglrt krwklflipe 721 eysppqvlvd tdkylemnrr rilddgfmha vfnpslnala tamatarhra skvleiardr 781 hveqalnetp eklnrdrrlv llsdpvtmar lhyrvwnape rysswvnhyq slvlnpqalq 841 grtssar