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LOCUS NP_462377 847 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_462377 VERSION NP_462377.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 847) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 847) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 847) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 847) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL22336. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..847 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..847 /product="nitrite reductase large subunit" /EC_number="1.6.6.-" /calculated_mol_wt=92931 Region 1..847 /region_name="PRK14989" /note="nitrite reductase subunit NirD; Provisional" /db_xref="CDD:184951" CDS 1..847 /gene="nirB" /locus_tag="STM3474" /coded_by="NC_003197.2:3623523..3626066" /note="similar to E. coli nitrite reductase (NAD(P)H) subunit (AAC76390.1); Blastp hit to AAC76390.1 (847 aa), 95% identity in aa 1 - 847" /transl_table=11 /db_xref="GeneID:1254997" CONTIG join(WP_000049249.1:1..847) ORIGIN 1 mskvrlaiig ngmvghrfie dlldksdasl fditvfceep rkaydrvhls syfshhtaee 61 lslvregfye khgvkvlvge raitinrqek vihssagrtv yydklimatg sypwippikg 121 setqdcfvyr tiedlnaiea carrskrgav vgggllglea agalknlgve thviefapml 181 maeqldqmgg eqlrrkiesm gvrvhtsknt qeivqqgnea rktmrfadgs elevdfivfs 241 tgirprdkla tqcglavaqr ggivindtcq tsdpdiyaig ecaswnnrvy glvapgykma 301 qvavdhilgs enafegadls aklkllgvdv ggigdahgrt pgarsyvyld eskevykrli 361 vsednktllg avlvgdtsdy gnllqlvlna ielpenpdsl ilpshagsgk paigvdklpd 421 saqicscfdv tkgdliaain kgchtvaalk aetkagtgcg gciplvtqvl naelakqgie 481 vnnnlcehfa ysrqelfhli rvegiktfee llakhgkgyg cevckptvgs llascwneyi 541 lkpqhtplqd tndnflaniq kdgtysvipr saggeitpeg lvavgriare fnlytkitgs 601 qriglfgaqk ddlpeiwrql ieagfetgha yakalrmakt cvgstwcryg vgdsvgfgve 661 lenrykgirt phkmkfgvsg ctrecaeaqg kdvgiiatek gwnlyvcgng gmkprhadll 721 aadldrdtli kyldrfmmfy irtadkltrt apwldnlegg ieylksviid dklglnehle 781 eemarlraav vcewtetvnt psaqvrfkhf insdkrdpnv qvvpereqhr patpyeripv 841 tlveena