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LOCUS NP_460579 400 aa linear CON 08-SEP-2022 Typhimurium str. LT2]. ACCESSION NP_460579 VERSION NP_460579.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 400) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 400) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 400) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 400) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20538. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..400 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..400 /product="putative oxidase" /calculated_mol_wt=42893 Region 34..392 /region_name="LOX_like_FMN" /note="L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes...; cd04737" /db_xref="CDD:240088" Site order(43,68,71..72,75,77,81..82,85..87,197,249..252, 268..269,272,274..275,298..302,305,330..331,334,374, 377..378,386) /site_type="other" /note="teramer interface [polypeptide binding]" /db_xref="CDD:240088" Site order(59,143,167,195,202,268,292,295,347) /site_type="active" /db_xref="CDD:240088" Site order(114,116,165,193,268,290,292..293,323,325,327, 346..347) /site_type="other" /note="FMN binding site [chemical binding]" /db_xref="CDD:240088" Site order(167,202,292) /site_type="active" /note="catalytic residues [active]" /db_xref="CDD:240088" CDS 1..400 /locus_tag="STM1620" /coded_by="complement(NC_003197.2:1707836..1709038)" /note="similar to E. coli L-lactate dehydrogenase (AAC76629.1); Blastp hit to AAC76629.1 (396 aa), 38% identity in aa 212 - 384, 33% identity in aa 22 - 175" /transl_table=11 /db_xref="GeneID:1253138" CONTIG join(WP_000848076.1:1..400) ORIGIN 1 mkthhlirvv aslamlatsg layaeeykas tdekaikmtn vaslearvqa kmekgafgyi 61 rggaedennl rsntesfdkk yimprvlqgi elkeidlstq llgiplktpi iqapmaaqgl 121 ahasgelata kgmaqvgsif slstygnkti eevanvsgkn pfffqlymsk nnqfnefila 181 qavkhgakai iltvdspvgg yreediknnf qfplgfanle mfarknddgs ktgkgagise 241 iyaqakqaft pediayvhri sglpvivkgi qspedaeiai qagaagiwvs nhggrqldsg 301 pssfdmlpai akvvnkrvpv ifdsgvrrgs hifkalasga divavgrpvl yglnlggaqg 361 vasvieqlnk eltinmmlgg arnieqvktt rlltekdlpq