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LOCUS NP_461068 996 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_461068 VERSION NP_461068.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 996) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 996) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 996) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 996) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21027. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..996 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..996 /product="putative PAS/PAC domain protein" /calculated_mol_wt=111379 Region 20..996 /region_name="PRK09776" /note="putative diguanylate cyclase; Provisional" /db_xref="CDD:182070" CDS 1..996 /gene="yegE" /locus_tag="STM2123" /coded_by="NC_003197.2:2208528..2211518" /note="Diguanylate cyclase/phosphodiesterase domain 1 and Diguanylate cyclase/phosphodiesterase domain 2 containing; similar to E. coli putative sensor-type protein (AAC75128.1); Blastp hit to AAC75128.1 (1105 aa), 76% identity in aa 540 - 437" /transl_table=11 /db_xref="GeneID:1253644" CONTIG join(WP_000042954.1:1..996) ORIGIN 1 mskpsqhvfv tvphpllrlv slglvafvft lfslvlsrvg tqlaplwfpt simmvafyrh 61 agrlwpgiav acslgsigas ltlfpaasln fswtainiie aatgaillrk llpsynplqn 121 lndwfrlaig savippllgg llfwliapea vaskafliwv lseaigaltl vplgllfkph 181 yllrhrdphl lletlltlvi tlalswlamr yipwpftcvi vllmwsavrl prmeaflifl 241 atvivvslml andptllatp ktdvmvnmpw lpflmillpa nmmtmvmyaf rterkhites 301 esrfrnamey saigmalvgt egqwlqvnks lshflgysqd elrtmtfqql twpedlnndl 361 eqlnmlvrgd insysmekry ytrngdvvwa llavslvrhk dnkplyfiaq iedindlkqs 421 eqenqrlmer itqanealfq ekerlhitld sigeavvcid vamnitfmnp iaekmsgwrq 481 edalgtpllt vlritsgdkg pllediyrad rsrsdmeqei vlhchnggsy dihysitpls 541 tldgdkigsv lviqdvtesr kmlrqlsysa thdaltqlan rasfekqlqq rlqtiqespq 601 hhalvfidld rfkavndsag haagdallre laslmlsmlr sgdllarlgg defglllpdc 661 nsdsarfiat rlinaineyh fmwegrlhri gasagitmin ehncqltevv sqadiacyaa 721 knsgrgrltv yepqhaltss kgmmpleeqw hmiknnhllm larnvapprt peatsfwlvs 781 lrlwtsegev meerafragl adsalhhald rrvfheffhh aatavaskgl svalplsaag 841 lysatlidel leqlehsplp prllhliipa dvivkqaqta aatlrklrqr gcqvilshvg 901 rdlqlfnllp lhivdyllld sdlianvhes lmdemltsii qghaqhldik tlagpvqnpq 961 vldtlsrigv dliygdtiae aqpldlllnt syfaih