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LOCUS NP_462879 928 aa linear CON 08-SEP-2022 Typhimurium str. LT2]. ACCESSION NP_462879 VERSION NP_462879.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 928) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 928) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 928) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 928) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL22838. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..928 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..928 /product="DNA polymerase I" /EC_number="2.7.7.7" /calculated_mol_wt=102998 Region 6..928 /region_name="PRK05755" /note="DNA polymerase I; Provisional" /db_xref="CDD:235591" CDS 1..928 /gene="polA" /locus_tag="STM3999" /coded_by="NC_003197.2:4206144..4208930" /note="3'->5' polymerase, 5'->3' and 3'->5' exonuclease; similar to E. coli DNA polymerase I, 3' --> 5' polymerase, 5' --> 3' and 3' --> 5' exonuclease (AAC76861.1); Blastp hit to AAC76861.1 (928 aa), 93% identity in aa 1 - 928" /transl_table=11 /db_xref="GeneID:1255525" CONTIG join(WP_000249972.1:1..928) ORIGIN 1 mvqipenpli lvdgssylyr ayhafppltn sageptgamy gvlnmlrsli mqyqpthaav 61 vfdakgktfr delfehyksh rppmpddlra qieplhamvk amglpllavs gveaddvigt 121 lareaekvgr pvlistgdkd maqlvtpnit lintmtntil gpdevvnkyg vppeliidfl 181 almgdssdni pgvpgvgekt aqallqglgg ldtlyaepek iagltfrgak tmagklaqnk 241 dvaylsykla tiktdvelel tceqlevqqp iadellglfk kyefkrwtad vesgkwlqak 301 gakpaakpqe tvvidespse paaalsyeny vtilddvtle swieklkkap vfafdtetds 361 ldniaanlvg lsfaiepgva ayvpvahdyl dapdqisrqr alellkplle dekvrkvgqn 421 lkydrgvlqn ygielrgiaf dtmlesyiln svagrhdmds lsdrwlkhkt itfediagkg 481 knqltfnqia leeagryaae dadvtlqlhl kmwpelqqhk gplnvfenie mplvpvlsrv 541 erngvkidpa vlhkhseeit lrlaelekka hdiageafnl sstkqlqtil fekqgikplk 601 ktpggapsts eevleelald yplpkviley rglaklksty tdklplminp ktgrvhtsyh 661 qavtatgrls stdpnlqnip vrneegrrir qafiapedyl ivsadysqie lrimahlsrd 721 kglltafaeg kdihrataae vfglpldsvt geqrrsakai nfgliygmsa fglsrqlnip 781 rkeaqkymdl yferypgvle ymertraqak eqgyvetleg rrlylpdiks snaarragae 841 raainapmqg taadiikram iavdawlqae qprvrmimqv hdelvfevhk ddldavakri 901 hqlmenctri dvpllvevgs genwdqah