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LOCUS NP_462517 1180 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_462517 VERSION NP_462517.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1180) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1180) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1180) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1180) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL22476. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1180 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1180 /product="putative TPR-repeat-containing protein" /calculated_mol_wt=129670 Region 25..1180 /region_name="PRK11447" /note="cellulose synthase subunit BcsC; Provisional" /db_xref="CDD:183140" Region 204..252 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276808" Region 326..354 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Site order(327,330..331,334..335,337,375,378..379,382..383, 385..386,409,412..413,416..417,420) /site_type="other" /note="putative protein binding surface [polypeptide binding]" /db_xref="CDD:276809" Region 373..403 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 408..436 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 487..512 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Site order(488..489,492..493,495,519,522..523,526..527, 529..530,553,556..557,560..561,564) /site_type="other" /note="putative protein binding surface [polypeptide binding]" /db_xref="CDD:276809" Region 517..547 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" Region 552..576 /region_name="TPR repeat" /note="TPR repeat [structural motif]" /db_xref="CDD:276809" CDS 1..1180 /gene="yhjL" /locus_tag="STM3616" /coded_by="complement(NC_003197.2:3793906..3797448)" /note="similar to E. coli putative oxidoreductase subunit (AAC76555.1); Blastp hit to AAC76555.1 (1166 aa), 80% identity in aa 20 - 1166" /transl_table=11 /db_xref="GeneID:1255139" CONTIG join(WP_001225195.1:1..1180) ORIGIN 1 mrkftlslmh aflpaggrna lpgkrgvsra llglslgmal tplagaatsa qqqlleqvrl 61 geathredlv rqslyrleli dpndpqviaa rfryllrqgd sdgaqklldr laqlapesta 121 yqssrtamll stpqgrqslq earllattgh teqaiasydk lfkgyppege laveywttva 181 klparrheai nqlqkinavs pgnnalqnal aqllfasgrr degfavlkqm aksstgrsaa 241 saiwyqqikd lpvsdasvka lqdyltqfse gdsvsaaraq lseqqkqlad pafrarsqgi 301 aavnageggk aiaqlqqavs arqddseavg algqaysqrg draravaqfe kalamaphss 361 srdkwesllk vnrywlliqq gdaalkannl aqaerfyqqa ravdntdsya vlglgdvama 421 rkdnaaaery yqqtlrmdsg ntnavrglan lyrqqspqka aafiaslsas qrrsiddier 481 slendrlaqq aetlesegkw aqaaelhrrr laldpgsvwv tyrlsrdlwq agqhaqadaq 541 mrslaqqkpn dpeqvyaygl ylsgsdrdra alahlntlpt sqwnsniqel agrlqsnqvl 601 esanrlrdsg kereaeallr qqppstrial tladwaqqrg dnaaaraayd avlarepgnv 661 damlgrveid iaqgdnaaar aqlaalpasq itsinmqrrv alaqlqlgdi taaartfnri 721 tpqakaqpps mesamvlrda aafqaqtgep qraletykda mvaaaitpvr pqdndtftrl 781 trndekddwl krgvrsdaae lyrqqdlnvt lahdywgssg tggysdlkah ttmlqvdapw 841 sdgraffrtd mvnmdvgrfs tdadgkydnn wgtctlekcs ghrsqadtga svavgwqnet 901 wrwdigttpm gfnvvdvvgg vsysddigpl gytlnahrrp isssllafgg qkdassntgt 961 kwggvrangg gvslsydkge angvwaslsg dqlsgknved nwrvrwmtgy yykvinennr 1021 rvtvglnnmi whydkdlsgy slgqggyysp qeylsfavpv mwrqrtenws welggsvsws 1081 hsrnrtmpry plmnlipady qedardqtng ggssqgfgyt aralierrvt anwfvgtavd 1141 iqqakdytps hlllyvrysa agwqgdmdlp pqplvpyadw