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LOCUS NP_463023 1407 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_463023 VERSION NP_463023.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1407) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1407) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1407) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1407) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL22982. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1407 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1407 /product="RNA polymerase, beta prime subunit" /EC_number="2.7.7.6" /calculated_mol_wt=155104 Region 16..1381 /region_name="PRK00566" /note="DNA-directed RNA polymerase subunit beta'; Provisional" /db_xref="CDD:234794" CDS 1..1407 /gene="rpoC" /locus_tag="STM4154" /coded_by="NC_003197.2:4370026..4374249" /note="similar to E. coli RNA polymerase, beta prime subunit (AAC76962.1); Blastp hit to AAC76962.1 (1407 aa), 98% identity in aa 1 - 1407" /transl_table=11 /db_xref="GeneID:1255680" CONTIG join(WP_000653965.1:1..1407) ORIGIN 1 mkdllkflka qtkteefdai kialaspdmi rswsfgevkk petinyrtfk perdglfcar 61 ifgpvkdyec lcgkykrlkh rgvicekcgv evtqtkvrre rmghielasp tahiwflksl 121 psrigllldm plrdiervly fesyvviegg mtnlerqqil teeqyldale efgdefdakm 181 gaeaiqallk smdleqecet lreelnetns etkrkkltkr iklleafvqs gnkpewmilt 241 vlpvlppdlr plvpldggrf atsdlndlyr rvinrnnrlk rlldlaapdi ivrnekrmlq 301 eavdalldng rrgraitgsn krplksladm ikgkqgrfrq nllgkrvdys grsvitvgpy 361 lrlhqcglpk kmalelfkpf iygklelrgl attikaakkm vereeavvwd ildevirehp 421 vllnraptlh rlgiqafepv liegkaiqlh plvcaaynad fdgdqmavhv pltleaqlea 481 ralmmstnni lspangepii vpsqdvvlgl yymtrdcvna kgegmvltgp keaeriyrag 541 laslharvkv riteyekden gefvahtslk dttvgrailw mivpkglpfs ivnqalgkka 601 iskmlntcyr ilglkptvif adqtmytgfa yaarsgasvg iddmvipekk heiiseaeae 661 vaeiqeqfqs glvtageryn kvidiwaaan drvskammdn lqtetvinrd gqeeqqvsfn 721 siymmadsga rgsaaqirql agmrglmakp dgsiietpit anfreglnvl qyfisthgar 781 kgladtalkt ansgyltrrl vdvaqdlvvt eddcgthegi lmtpvieggd vkeplrdrvl 841 grvtaedvlk pgtadilvpr ntllheqwcd lleansvdav kvrsvvscdt dfgvcahcyg 901 rdlarghiin kgeaigviaa qsigepgtql tmrtfhigga asraaaessi qvknkgsikl 961 snvksvvnss gklvitsrnt elklidefgr tkesykvpyg avmakgdgeq vaggetvanw 1021 dphtmpvite vsgfirftdm idgqtitrqt deltglsslv vldsaerttg gkdlrpalki 1081 vdaqgndvli pgtdmpaqyf lpgkaivqle dgvqissgdt laripqesgg tkditgglpr 1141 vadlfearrp kepailaeia givsfgketk gkrrlvitpv dgsdpyeemi pkwrqlnvfe 1201 gervergdvi sdgpeaphdi lrlrgvhavt ryivnevqdv yrlqgvkind khievivrqm 1261 lrkatiesag ssdflegeqv eysrvkianr eleangkvga tfsrdllgit kaslatesfi 1321 saasfqettr vlteaavagk rdelrglken vivgrlipag tgyayhqdrm rrraageqpa 1381 tpqvtaedas aslaellnag lggsdne