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LOCUS NP_460954 564 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_460954 VERSION NP_460954.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 564) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 564) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 564) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 564) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20913. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..564 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..564 /product="putative TPR repeat protein" /calculated_mol_wt=64210 Region 32..174 /region_name="YwqK" /note="Antitoxin component YwqK of the YwqJK toxin-antitoxin module [Defense mechanisms]; COG2849" /db_xref="CDD:442097" Region 134..318 /region_name="YwqK" /note="Antitoxin component YwqK of the YwqJK toxin-antitoxin module [Defense mechanisms]; COG2849" /db_xref="CDD:442097" Region 259..391 /region_name="YwqK" /note="Antitoxin component YwqK of the YwqJK toxin-antitoxin module [Defense mechanisms]; COG2849" /db_xref="CDD:442097" Region 396..559 /region_name="TPR" /note="TPR repeat [General function prediction only]; COG0790" /db_xref="CDD:440553" Region 425..454 /region_name="SLR repeat" /note="SLR repeat [structural motif]" /db_xref="CDD:276807" Region 461..490 /region_name="SLR repeat" /note="SLR repeat [structural motif]" /db_xref="CDD:276807" Region 497..526 /region_name="SLR repeat" /note="SLR repeat [structural motif]" /db_xref="CDD:276807" CDS 1..564 /locus_tag="STM2007" /coded_by="NC_003197.2:2086918..2088612" /note="similar to E. coli orf, hypothetical protein (AAC73745.1); Blastp hit to AAC73745.1 (327 aa), 32% identity in aa 130 - 322, 32% identity in aa 60 - 242, 32% identity in aa 17 - 168, 33% identity in aa 59 - 204, 23-1073758628dentity in aa 23 - 106" /transl_table=11 /db_xref="GeneID:1253528" CONTIG join(WP_010989035.1:1..564) ORIGIN 1 mplpydkekk lwkvtgwyle sseetgevmq skqiafegyt neenfanrqr vsvfksfyes 61 gnlksiyhyn aqnkrdgkae tyfdekdkia etltfkdgqp egeyivyhen gaveskryfa 121 qgkikdgecp hfydngvlkq khsylnqkle gpafeyfpdg kikgkysysk gtivgtstey 181 ystgkirgvy hrnnqgendg tfeqyseegk llskatykng kqlsaqswye nghpkeessf 241 dsegrkhgav kewfsngkpa sskmykhdvl dgdfekwyen ghresvypyk ngmlngdakh 301 wneqgkltyt teykddkkqg adrrwsertg klveevmfan dernglkref ndrtgkvlsa 361 lpyvdgdkeg teeaydedgi kyircyhnde elselyaptd vtnkakqgds taqyhlgkye 421 fectnydaam kwltqsaeqn hpgallflay ayndgdgvaq dskkylsylf kaaelgesda 481 qlevgylnli gegmpknlpe aykwikksad qgnaqahynl glmyrngdgv ekdlnkaklh 541 ltaavkggvk palaalkelt pqtk