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LOCUS NP_461748 876 aa linear CON 08-SEP-2022 Typhimurium str. LT2]. ACCESSION NP_461748 VERSION NP_461748.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 876) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 876) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 876) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 876) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21707. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..876 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..876 /product="alanyl-tRNA synthetase" /EC_number="6.1.1.7" /calculated_mol_wt=95769 Region 3..875 /region_name="AlaS" /note="Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]; COG0013" /db_xref="CDD:439784" CDS 1..876 /gene="alaS" /locus_tag="STM2827" /coded_by="complement(NC_003197.2:2971375..2974005)" /note="similar to E. coli alanyl-tRNA synthetase (AAC75739.1); Blastp hit to AAC75739.1 (876 aa), 95% identity in aa 1 - 876" /transl_table=11 /db_xref="GeneID:1254350" CONTIG join(WP_000047224.1:1..876) ORIGIN 1 mskstaeirq afldffhskg hqvvassslv pnndptllft nagmnqfkdv flgldkrnys 61 rattsqrcvr aggkhndlen vgytarhhtf femlgnfsfg dyfkhdaiqf awelltgenw 121 falpkerlwv tvyetddeay eiwekevgip reriirigdn kgapyasdnf wqmgdtgpcg 181 pcteifydhg dhiwggppgs peedgdryie iwnivfmqfn rqadgtmepl pkpsvdtgmg 241 leriaavlqh vnsnydidlf rtlieavakv tgatdlgnks lrviadhirs caflvadgvl 301 psnenrgyvl rriirravrh gnmlgaketf fyklvgplie vmgsageelk rqqaqveqvl 361 kteeeqfart lerglallde elaklqgdtl dgetafrlyd tygfpvdlta dvcrernikv 421 deagfeaame eqrrrareas gfgadynami rvdsasefkg ydhlelngkv talfvdgkav 481 eainagqeav vvldqtpfya esggqvgdkg elkgagftfa vddtqkygqa ighlgklsag 541 alkvgdavqa dvdearrari rlnhsathlm haalrqvlgt hvaqkgslvs dkvlrfdfsh 601 neamkpseir evedlvnaqi rrnlpietni mdldaakakg amalfgekyd ervrvlsmgd 661 fstelcggth asrtgdiglf riisesgtaa girrieavtg egamatvhaq sdrlndiahl 721 lkgdsqnlgd kvravlertr qlekelqqlk dqaaaqesan lsskavdlng vkllvselag 781 iepkmlrtmv ddlknqlgst vivlatvveg kvsliagvsk dvtdrvkage ligmvaqqvg 841 gkgggrpdma qaggtdaaal paalasvqgw vsaklq