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LOCUS NP_459644 642 aa linear CON 08-SEP-2022 enterica subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_459644 VERSION NP_459644.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 642) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 642) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 642) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 642) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19603. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..642 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..642 /product="putative sigma-54 dependent transcriptional regulator" /calculated_mol_wt=71621 Region 32..196 /region_name="PrpR_N" /note="Propionate catabolism activator; pfam06506" /db_xref="CDD:428980" Region 205..640 /region_name="RocR" /note="RocR-type transcriptional regulator, contains PAS, AAA-type ATPase, and DNA-binding Fis domains [Transcription, Signal transduction mechanisms]; COG3829" /db_xref="CDD:443041" CDS 1..642 /locus_tag="STM0652" /coded_by="NC_003197.2:714548..716476" /note="similar to E. coli response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS) (AAC75280.1); Blastp hit to AAC75280.1 (461 aa), 37% identity in aa 67 - 453" /transl_table=11 /db_xref="GeneID:1252172" CONTIG join(WP_001044182.1:1..642) ORIGIN 1 mnktkdiaas plcfvspypq lakaaealva qldyavtihq ttlnrildel pllesrghqv 61 lisrggcaei lkkhsklpvv eikmsgydil dalipfkgqk gtvgivgfss vikgcarvae 121 qlninykift lqgndketis clkrqlastp ldcivgdtvc qdyfsplgsq frlldsspas 181 itealeears lylafrsqll erhhlqlild qfdkavitld dtgallhynk yasqlfkina 241 sgeiydasfl kqvlhqerht lregktvsak vvdtpqgamv vnlypvfaar qlsrvvltmq 301 tvsslqgaeh hvrrqelsrr glsaryhfdd lltenpemlr rlaiiknyag tdatilinge 361 sgtgkevlaq sihnasqrvn gpfvaincga mapqilesel fgyvagaftg aspkgkiglf 421 elahhgtifl deiseldkpl qtrllrvlqe rqimrlgsdq mipvdirvia atnqtltkli 481 adgtfredly yrlnvlkvtt iplrkrpedi kaiglsllts fsqhykrpal tltpalwqel 541 qrfawpgnvr qlsniierlv lsidhspatl degrlllddl eegsrreptt chdcqmlagd 601 yktirlrilr klleaerdnk slvakrlnvd rtsltrwire sa