Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_459174 796 aa linear CON 08-SEP-2022 Typhimurium str. LT2]. ACCESSION NP_459174 VERSION NP_459174.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 796) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 796) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 796) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 796) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19133. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..796 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..796 /product="glucose dehydrogenase" /EC_number="1.1.5.2" /calculated_mol_wt=86364 Region 33..792 /region_name="PQQ_membr_DH" /note="membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family; TIGR03074" /db_xref="CDD:274418" Site order(193..195,198,238,240,243..245,248,301,303,306..308, 311,367,369,372..374,377,445,447,450..452,455,499,501, 504..506,509,674,676,679..681,684,735,737,740..742,745, 788,790) /site_type="other" /note="Trp docking motif [polypeptide binding]" /db_xref="CDD:199838" Site order(217,260..261,266,336,351..352,404,493,712) /site_type="active" /note="putative active site [active]" /db_xref="CDD:199838" CDS 1..796 /gene="gcd" /locus_tag="STM0169" /coded_by="complement(NC_003197.2:198220..200610)" /note="similar to E. coli glucose dehydrogenase (AAC73235.1); Blastp hit to AAC73235.1 (796 aa), 92% identity in aa 1 - 796" /transl_table=11 /db_xref="GeneID:1251687" CONTIG join(WP_000829731.1:1..796) ORIGIN 1 maennarspr llvtltalfa alcglyllig gvwlvaiggs wyypiaglvm lvvagllwrs 61 kraalwlyaa lllatmiwgv wevgfdfwal tprsdilvff giwlilpfvw hrlvvpssga 121 vaalvvalli sggiltwagf ndpqeingtl radatpaats ssiadedwpa ygrnqegqry 181 splkqitadn vhqlkeawvf rtgdlkqpnd pgeitnevtp ikvgdtlylc tahqrlfald 241 aasgkekwhf dpqlktdssf qhvtcrgvsy heakadtasp eviadcprri ilpvndgrlf 301 avnaetgklc etfankgvln lqtnmpdttp glyeptsppi itdktiviag svtdnfstre 361 tsgvirgfdv nsgklmwafd pgakdpnaip adehaftfns pnswapaayd akldlvylpm 421 gvttpdiwgg nrtpeqerya ssilalnatt gklawsyqtv hhdlwdmdlp aqptladitv 481 dgttvpviya paktgnifvl drrngelvvp apekpvpqga akgdyvaktq pfsdltfrpk 541 kdlsgadmwg atmfdqlvcr vmfhqlryeg iftppseqgt lvfpgnlgmf ewggisvdpd 601 rqvaianpma lpfvsklipr gpgnpmeppk dakgtgteag iqpqygvpfg vtlnpflspf 661 glpckqpawg yisaldlktn eivwkkrigt prdsmpfpmp vpvpfnmgmp mlggpistag 721 nvlfiaatad nylraynmsn geklwqgrlp aggqatpmty evngkqyvvv sagghgsfgt 781 kmgdyivaya lpddak