Gifsy-2 prophage Clp protease-like protein [Phage Gifsy-2].

LOCUS       NP_460008                693 aa            linear   CON 08-SEP-2022
ACCESSION   NP_460008
VERSION     NP_460008.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Phage Gifsy-2
  ORGANISM  Phage Gifsy-2
            Viruses; unclassified bacterial viruses.
REFERENCE   1  (residues 1 to 693)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 693)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 693)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 693)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL19967.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Phage Gifsy-2"
                     /db_xref="taxon:129862"
     Protein         1..693
                     /product="Gifsy-2 prophage Clp protease-like protein"
                     /calculated_mol_wt=75056
     Region          39..197
                     /region_name="S14_ClpP_1"
                     /note="Caseinolytic protease (ClpP) is an ATP-dependent,
                     highly conserved serine protease; cd07016"
                     /db_xref="CDD:132927"
     Site            order(42,44,55..56,59,75,82,86,89,92..93,97,105,125,127,
                     133..136,143,146,148,150,180,182)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:132927"
     Site            order(108,131,180)
                     /site_type="active"
                     /note="active site residues [active]"
                     /db_xref="CDD:132927"
     Region          <551..627
                     /region_name="Mu-like_gpT"
                     /note="Mu-like prophage major head subunit gpT; cl01826"
                     /db_xref="CDD:470363"
     CDS             1..693
                     /locus_tag="STM1033"
                     /coded_by="NC_003197.2:1120669..1122750"
                     /note="similar to E. coli ATP-dependent proteolytic
                     subunit of clpA-clpP serine protease, heat shock protein
                     F21.5 (AAC73540.1); Blastp hit to AAC73540.1 (207 aa), 29%
                     identity in aa 73 - 203"
                     /transl_table=11
                     /db_xref="GeneID:1252551"
CONTIG      join(WP_010989008.1:1..693)
ORIGIN      
        1 mkttvaaikm ppvmtagngr gegssnswys iraaanntae vriydeiggw gisarwfaee
       61 laalgqinri nlhihspgga vldgiaiynl lknhpaqktv yidgmacsma saiamvgnpi
      121 impenammmi hkprgvagge aedireyadl ldkiesviip iytektgktp ediaamlake
      181 twmsgaecvs egfadkliqp vkamacihsk rveefehmpq sikgmiiapq gnagaqpqpq
      241 akapesqiqs qaqslvtvde nairarlqee qrnritgiqn vfslsgdrya slmakciadv
      301 dcslemakdr llaemakgit ptnqlngpqn raefhagmyt gngnitgdav raavmaragy
      361 eeaqkdnpyn cmtlrelari slvargtgvs smnpmqmigm afthstsdfg nilldvanks
      421 ilqgwqeape tfdawtkkgq lsdfriahrv gmggfsslrq vregaeykyv ttgdkqatia
      481 latygelfsi trqaiinddm nmltdvpmkl graakatiad lvydvlisnq klssdnvalf
      541 dktkhanvle kavmdvasld karqlmrmqk egdrhlnirp afvlvptame svsnqviksv
      601 svkgadinag iinpvkdfat viaeprldda sqstfyltaa kgsdtvevay lngvdepyid
      661 qqegftvdgv ttkvridagv apvdyrgmvk ctv