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LOCUS NP_463065 581 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_463065 VERSION NP_463065.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 581) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 581) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 581) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 581) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL23024. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..581 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..581 /product="putative phage tail fiber protein H" /calculated_mol_wt=58834 Region 1..244 /region_name="COG5301" /note="Phage-related tail fiber protein [Mobilome: prophages, transposons]" /db_xref="CDD:444101" Region 276..>304 /region_name="Phage_fiber_2" /note="Phage tail fibre repeat; pfam03406" /db_xref="CDD:427282" Region 332..>360 /region_name="Phage_fiber_2" /note="Phage tail fibre repeat; pfam03406" /db_xref="CDD:427282" CDS 1..581 /locus_tag="STM4200" /coded_by="complement(NC_003197.2:4420457..4422202)" /note="similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 31% identity in aa 312 - 498, 33% identity in aa 426 - 547, 22% identity in aa 233 - 444, 30% identity in aa 132 - 266, 23-1073758628dentity in aa 170 - 398, 21% identity in aa 178 - 417, 24-1073758654dentity in aa 111 - 354, 23% identity in aa 950 - 1104, 20% identity in aa 1015 - 1106" /transl_table=11 /db_xref="GeneID:1255726" CONTIG join(WP_000368196.1:1..581) ORIGIN 1 mdnefytllt drgmakiasa ladkkqlhlq kmavgdgggq yyepiasqtk lrhevwrgem 61 ntltvapnnp nwliaelvlp edvggwyvre vgvfddegel iaigkfpesy kpllpggcgk 121 qvcirlimev snttavtltv dpsivlatrd yvdtrldehe hstnhpdatl tqkgftqlsn 181 atdsddetka atpkavkaam aearnhthtw nqitgvpdgt ltqkgivkln satdststte 241 aatpsavkaa mdkanaaapa nhthvwnqvt gvpdgtlaqk givklnnatd ststteaatp 301 savkaamdka saaaparhth awgqitgapd gtltqkgivk lnnatdstst teaatpsavk 361 aaydkasaaa panhshyqff tangtftvpd gvtqvfveml gggggggggg htsntdglly 421 csggnagksg epeiaivpvi agnnypvtvg aggasgaggv lpnsnptgnv vqvgqagnsg 481 inggnsifid vvanggagga ggivqsripl sgfnqldsis ggnaettffg kggtgavlsn 541 gsnasgygag ggggasvnsl nialsgyagg rgssgfvkis w