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LOCUS NP_459916 552 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_459916 VERSION NP_459916.2 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 552) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 552) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 552) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 552) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19875. On Dec 2, 2016 this sequence version replaced NP_459916.1. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..552 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..552 /product="homology with RecF protein" /calculated_mol_wt=63416 Region 1..375 /region_name="DUF2813" /note="Protein of unknown function (DUF2813); pfam11398" /db_xref="CDD:431868" Region 376..472 /region_name="TOPRIM_OLD" /note="topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in bacterial and archaeal nucleases of the OLD (overcome lysogenization defect) family. The bacteriophage P2 OLD protein, which has DNase as well as RNase activity; cd01026" /db_xref="CDD:173776" Site order(385..386,389,438,440) /site_type="active" /note="putative active site [active]" /db_xref="CDD:173776" Site order(385,438) /site_type="other" /note="putative metal-binding site [ion binding]" /db_xref="CDD:173776" CDS 1..552 /gene="ybjD" /locus_tag="STM0939" /coded_by="NC_003197.2:1015863..1017521" /note="similar to E. coli orf, hypothetical protein (AAC73963.1); Blastp hit to AAC73963.1 (552 aa), 89% identity in aa 1 - 552" /transl_table=11 /db_xref="GeneID:1252458" CONTIG join(WP_000599761.1:1..552) ORIGIN 1 milerveivg frginrlslm leqnnvlige nawgksslld altlllspel dlyhfvredf 61 wfppgdikgr ehhlhiiltf retqpgrhrv rryraleacw slceddfhri fyrlegecga 121 dgsvmtlrsf lnsdgqpllv enindqvrhl vrlmpvlrlr darfmrrirn gtvpnvpdve 181 vtarqldfla relatrpqnl tdgqirqgls amvqllehyf seqgagqarh rlmrrrsqne 241 qrswryldii nrmidkpgsr shrvillglf stllqakgtl rlhkdarpll lvedpetrlh 301 pimlsvawql lnllplqria ttnsgellsl tpvehvvrlv ressrvaawr lgpgglsaed 361 grriafhirf nrasslfarc wllvegetet wvinelarqc ghhfdaegik viefaqsglk 421 plvkfarrmg iewhvlvdgd eagkkyaatv rsllnndree erehltalpa ldmehfmyrq 481 gfadvfhrva qlppnvpmnt rkiitkaihr sskpdlaiev ameagrrgid avpplfrkmf 541 srvvwlargr ad