D-alanyl-D-alanine carboxypeptidase [Salmonella enterica subsp.

LOCUS       NP_462211                477 aa            linear   CON 08-SEP-2022
            enterica serovar Typhimurium str. LT2].
ACCESSION   NP_462211
VERSION     NP_462211.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (residues 1 to 477)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 477)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 477)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 477)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL22170.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     Protein         1..477
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /EC_number="3.4.16.4"
                     /note="penicillin-binding protein 4"
                     /calculated_mol_wt=51826
     Region          1..477
                     /region_name="PRK11113"
                     /note="D-alanyl-D-alanine carboxypeptidase/endopeptidase;
                     Provisional"
                     /db_xref="CDD:182972"
     CDS             1..477
                     /gene="dacB"
                     /locus_tag="STM3300"
                     /coded_by="NC_003197.2:3468661..3470094"
                     /note="similar to E. coli D-alanyl-D-alanine
                     carboxypeptidase, fraction B; penicillin-binding protein 4
                     (AAC76214.1); Blastp hit to AAC76214.1 (477 aa), 93%
                     identity in aa 1 - 477"
                     /transl_table=11
                     /db_xref="GeneID:1254823"
CONTIG      join(WP_001212680.1:1..477)
ORIGIN      
        1 mrfsrfiigl ttsiafsvqa anideyikql paganlalmv qkigapapai dyhsqqmalp
       61 astqkvital aaliqlgpdf rftttletkg nvdngilkgd viarfggdpt lkrqdirnmv
      121 atlkksgvtq idgnvlidts ifashdkapg wpwndltqcf sappaaaivd rncfsvslys
      181 aqkpndlafi rvasyypvtm fsqvrtlprg sadaqyceld vvpgdlnryt ltgclpqrad
      241 plplafaiqd gasyagailk qelkeagity rgtllrqtqv nepgtivask qsaplhdllk
      301 imlkksdnmi adtvfrmigh vrfnvpgtwr agsdavrqil rqqagidign tiiadgsgls
      361 rhnliapatm mqvlqyiaqh dnelnfisml plagydgslq yraglhqagv dgkvsaktgs
      421 lqgvynlagf ittasgqrma fvqylsgyav ppadqrnrri plvrfesrly kdiyqnn