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LOCUS NP_460024 812 aa linear CON 08-SEP-2022 ACCESSION NP_460024 VERSION NP_460024.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Phage Gifsy-2 ORGANISM Phage Gifsy-2 Viruses; unclassified bacterial viruses. REFERENCE 1 (residues 1 to 812) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 812) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 812) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 812) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19983. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..812 /organism="Phage Gifsy-2" /db_xref="taxon:129862" Protein 1..812 /product="Gifsy-2 prophage probable tail fiber protein" /calculated_mol_wt=81295 Region 1..134 /region_name="Peptidase_M14NE-CP-C_like" /note="Peptidase associated domain: C-terminal domain of M14 N/E carboxypeptidase; putative folding, regulation, or interaction domain; cl21470" /db_xref="CDD:473874" Region <353..433 /region_name="COG5301" /note="Phage-related tail fiber protein [Mobilome: prophages, transposons]" /db_xref="CDD:444101" Region 357..394 /region_name="Phage_fiber_2" /note="Phage tail fibre repeat; pfam03406" /db_xref="CDD:427282" Region 632..679 /region_name="Collar" /note="Phage Tail Collar Domain; pfam07484" /db_xref="CDD:429485" CDS 1..812 /locus_tag="STM1049" /coded_by="NC_003197.2:1136464..1138902" /note="similar to E. coli putative membrane protein (AAC74454.1); Blastp hit to AAC74454.1 (1122 aa), 49% identity in aa 3 - 549, 57% identity in aa 878 - 1084, 43% identity in aa 1008 - 1122, 32% identity in aa 354 - 568, 26-1073758628dentity in aa 961 - 1111, 24% identity in aa 959 - 1113, 27-1073758654dentity in aa 940 - 1106, 26% identity in aa 766 - 829, 36% identity in aa 822 - 851" /transl_table=11 /db_xref="GeneID:1252567" CONTIG join(WP_001144679.1:1..812) ORIGIN 1 mpvlisgvlk dgtgtpvqnc tiqlkacrts ttvvvntvas enpddagrys mdveqgqytv 61 tllvdgypps hagvitvydd skpgtlndfl gamteddvrp ealrrfeamv eevarqasea 121 srnataagqa seqaqtsagq asesataavn aagaaeasat qaassaasae ssagtattka 181 geasasaasa dtartaaaas aaaaktsean adasrtaagd saaaaaasat aaqtsaerag 241 asetaaktse tqaassagda gasataaaas ekaaaasaaa aktsetnaat sastaaasat 301 aasssaseas thaaasdtsa slaaqsstaa gaaatraeda akraediadv isledasltk 361 kgivklssat dsdsealaat pkavhavmde vqtkapldsp altgtptapt petaaagiei 421 ataafvaakv aqlvgsapet ldtlkelada lgndpnfatt vlnklagkqp lddtltalsg 481 ksvdglieyv glretinhaa dallksqngg dipekplfvq nigalpasgt avaanrlasr 541 galpaltgat rgsdsglimg evynngyptq ygnilrltgt gdgeiligws gtngapapay 601 irshrdtada ewsewamlyt slnpppnsyp vgaaiawpsd atpagyalmq gqsfdksayp 661 llaiaypsgi ipdmrgwtik gkpisgravl sqemdgnksh shsaraqdtd lgtkstssfd 721 ygtkstnttg nhthqfggyi nsywgdsnht sfqpgggawt qaagdhahtv yigghehtmy 781 igphghvviv dadgnaettv kniafnyivr la