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LOCUS NP_459778 765 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_459778 VERSION NP_459778.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 765) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 765) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 765) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 765) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19737. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..765 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..765 /product="leucine-rich repeat protein" /calculated_mol_wt=86741 Region 1..764 /region_name="PRK15370" /note="type III secretion system effector E3 ubiquitin transferase SlrP" /db_xref="CDD:185268" Region 181..200 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" Region 201..221 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" Region 222..242 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" Region 243..263 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" Region 264..284 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" Region 285..306 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" Region 308..329 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" Region 348..368 /region_name="leucine-rich repeat" /note="leucine-rich repeat [structural motif]" /db_xref="CDD:275380" CDS 1..765 /gene="slrP" /locus_tag="STM0800" /coded_by="NC_003197.2:866947..869244" /note="leucine-rich repeat protein SlrP (gi|5107020)" /transl_table=11 /db_xref="GeneID:1252320" CONTIG join(WP_000482001.1:1..765) ORIGIN 1 mfnitniqst arhqsisnea stevplkeei wnkisaffss ehqveaqnci aylchppeta 61 speeikskfe clrmlafpay adniqysrgg adqycilsen sqeilsivfn tegytveggg 121 ksvtytrvte seqassasgs kdavnyeliw sewvkeapak eaanreeavq rmrdclknnk 181 telrlkilgl ttipayipeq ittlildnne lkslpenlqg niktlyansn qltsipatlp 241 dtiqemelsi nritelperl psalqsldlf hnkisclpen lpeelrylsv ydnsirtlpa 301 hlpsgithln vqsnsltalp etlppglktl eagenaltsl paslppelqv ldvsknqitv 361 lpetlpptit tldvsrnalt nlpenlpaal qimqasrnnl vrlpeslphf rgegpqptri 421 iveynpfser tiqnmqrlms svdyqgprvl famgdfsivr vtrplhqavq gwltsleeed 481 vnqwrafeae anaaafsgfl dylgdtqntr hpdfkeqvsa wlmrlaedsa lretvfiiam 541 natiscedrv tlayhqmqea tlvhdaerga fdshlaelim agreifrleq ieslarekvk 601 rlffidevev flgfqnqlre slslttmtrd mrfynvsgit esdldeaeir ikmaenrdfh 661 kwfalwgpwh kvleriapee wremmakrde cietdeyqsr vnaeledlri addsdaertt 721 evqmdaerai gikimeeinq tlfteimeni llkkevsslm saywr