Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_461202 828 aa linear CON 08-SEP-2022 subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_461202 VERSION NP_461202.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 828) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 828) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 828) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 828) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21161. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..828 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..828 /product="periplasmic large subunit nitrate reductase" /EC_number="1.7.99.4" /calculated_mol_wt=92743 Region 1..828 /region_name="PRK13532" /note="nitrate reductase catalytic subunit NapA" /db_xref="CDD:237416" Site order(46,48..49,53,81,222) /site_type="other" /note="[4Fe-4S] binding site [ion binding]" /db_xref="CDD:239155" Site order(83,150,175,179,212..215,218..219,243..245,262,264, 371..373,376,409..410,481..482,486,508..511,525..527,531, 558) /site_type="other" /note="molybdopterin cofactor binding site" /db_xref="CDD:239155" CDS 1..828 /gene="napA" /locus_tag="STM2259" /coded_by="complement(NC_003197.2:2356417..2358903)" /note="complexes with NapB; similar to E. coli probable nitrate reductase 3 (AAC75266.1); Blastp hit to AAC75266.1 (828 aa), 94% identity in aa 1 - 828" /transl_table=11 /db_xref="GeneID:1253781" CONTIG join(WP_000778097.1:1..828) ORIGIN 1 mklsrrsfmk anavaaaaaa aglsvpgvar avvgqqeaik wdkapcrfcg tgcgvlvgtq 61 qgrvvacqgd pdapvnrgln cikgyflpki mygkdrltqp mlrmkdgsyh kdgeftpvsw 121 eqafdvmeek fktslkekgp eaigmfgsgq wtiwegyaaa klfkagfrsn nidpnarhcm 181 asavvgfmrt fgmdepmgcy ddieqadafv lwgsnmaemh pilwsritnr rlsdpnvkva 241 vlstfqhrsf eladngivft pqsdlvilny ianyiiqnna vnqdfftkhv nlrkgatdig 301 yglrpthple kaaknpgsda sepmsfdeyk afvaeytldk taemtgvpkd qleqlaqlya 361 dpnkrvisyw tmgfnqhtrg vwannlvynl hlltgkisqp gcgpfsltgq psacgtarev 421 gtfshrlpad mvvtnekhrd icekhwqipa gtipakvglh avaqdralkd gklnvywvmc 481 nnnmqagpni nedrmpgwrd prnfiivsdp yptvsalsad lilptamwve kegaygnaer 541 rtqfwrqqik apgeaksdlw qlvqfsrrfk teevwpeall aqkpelrgkt lydvlfatpa 601 vskfplselk edqlndesre lgfylqkglf eeyawfgrgh ghdlapfddy hnarglrwpv 661 vegketqwry segndpyvka gegykfygkp dgkavifalp fepaaespdn eydlwlstgr 721 vlehwhtgsm trrvpelhra fpeavvfihp ldakardlrr gdkvkvssrr gevisivetr 781 grnrppqglv ympffdaaql vnnltldatd plsketdfkk cavklakv