Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_460805 879 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_460805 VERSION NP_460805.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 879) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 879) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 879) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 879) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20764. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..879 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..879 /product="putative inner membrane protein" /calculated_mol_wt=95208 Region 3..508 /region_name="PqiB" /note="Intermembrane transporter PqiABC subunit PqiB [Cell wall/membrane/envelope biogenesis]; COG3008" /db_xref="CDD:442245" Region 636..>866 /region_name="PqiB" /note="Intermembrane transporter PqiABC subunit PqiB [Cell wall/membrane/envelope biogenesis]; COG3008" /db_xref="CDD:442245" CDS 1..879 /locus_tag="STM1849" /coded_by="NC_003197.2:1945855..1948494" /note="similar to E. coli orf, hypothetical protein (AAC74904.1); Blastp hit to AAC74904.1 (879 aa), 90% identity in aa 1 - 879" /transl_table=11 /db_xref="GeneID:1253368" CONTIG join(WP_000551143.1:1..879) ORIGIN 1 mhmsqetpas kteaqiktkr rispfwllpl ialmiagwlv wdsyqdrgns vtidfmsadg 61 ivpgrtpvry qgvevgtved vslskdlrki evrvsiksdm edalreetqf wlvtpkasla 121 gvsgldalvg gnyigmmpgk gkprdhfval dtqpkyrlsn gdlmihlhap dlgslnsgsl 181 vyfrkipvgr vydysinpnk qgvtidvlie rrftdlvkkg srfwnvsgid adlslsgakv 241 kleslaalvn gaiafdspdn skpaaqddtf glykdlahsq rgvivklelp sgdglkaest 301 plmyqglevg elskltlnpg gkvtgemtvd psvvplmren trielrnpkl slsdanissl 361 ltgktfelvp gdgeprsefv vvpgekallh eanaltltlt apesygiepg qplilhgvki 421 gqviernlss kgvsfivaie pqhrdlvqgd skfvvnsrvd vkvgldgvef lgasasewid 481 ggirilpgts gkmkstyply anlekalens lsdlptttlt ltaetlpdvq agsvvlyrkf 541 evgevitvrp rantfdidlh ikpeyrhllt snsvfwaegg akvqlngsgl tvqasplsra 601 lkgaisfdnl sgasasrrkg dkrilyaset saravggqit lhafdagkla egmpirylgi 661 digqiqtlel itarnevqak avlypeyvqt faragtrfsv itpqisaagv ehldtilqpy 721 invepgrgaa rrdfelqeat itdsryldgl sivveapeag slnigtpvlf rgievgtvtg 781 mslgslsdrv mitlriskry qylvrnnsvf wlasgysldf gltggvvktg tfnqfirggi 841 afatppgtpl apkaqagkhf llqesepkew rewgtalpr