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LOCUS NP_461448 2039 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_461448 VERSION NP_461448.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 2039) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 2039) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 2039) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 2039) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21407. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..2039 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..2039 /product="C-terminal region of AIDA-like protein" /calculated_mol_wt=206998 Region 1..2039 /region_name="PRK15319" /note="fibronectin-binding autotransporter adhesin ShdA" /db_xref="CDD:185219" CDS 1..2039 /gene="shdA" /locus_tag="STM2513" /coded_by="complement(NC_003197.2:2627589..2633708)" /note="IcsA; subspecies I specific; Peyer's patch colonization and shedding factor; ShdA (gi|5107805)" /transl_table=11 /db_xref="GeneID:1254035" CONTIG join(WP_010989046.1:1..2039) ORIGIN 1 mrnmyvvase larghskvka qvcasethsp nqkseygqii katraalaca vaaalgffsp 61 lamadnqvsy adaqphvlda stppisysgt degaalyvsg vatvgwqptt vtgtglviet 121 sgggaddpdg gkyvsnaisl dhyaileltd akitttgiyt qgisaadgst lrltdstlti 181 dgnfgvmtly tgseatldgt iveaansssa qvqqgstlnv ldgstitlaq gqinvvagnt 241 atdegstlnl sdssvssagt mstiqgtnka alnltnatit htnasgaavq annattldit 301 ggnitsagtg vyilasdari dgatinadgd gifitskrkl dgyedlnalt vsdanvtskt 361 valnidgstt indpieltns tftaptaikl gskatiqaek tmltgnivqt dasssslsls 421 qgstltgsvd amfttlsldd tsqwnmtdps tvgnltndgd itlgnasgst gtlltvdntl 481 tlqdgsqina tldtansapi ikaanvtldg tlnlsstatf vapetdehfg sitlidsqta 541 ittdfdsvtl dadtsampdy ltinagvdan dntnyelstg lswyagansa raahgtftvd 601 agstftvtse ldettatsnw ngskltkqgd gtlilsntgn dygdteidgg ilaakdaaal 661 gtgdvtiaes atlalsqgtl dnnvtgegqi vksgsdeliv tgdnnysggt tisggtltad 721 hadslgsgdi dnsgvlkvge gelenilsgs gslvktgtge ltlsgdntys ggttitggtl 781 tadhadslgs gdidnsgvlk vgegdlentl sgsgslvktg tgeltlsggn dysggttiig 841 gtltadhads lgtgavansg vlqvgegele ntlsgsgslv ktgtgeltls gdnsysggtt 901 iiggtltadh adslgtgava nsgvlqvgeg elentlsgsg slvktgtgel tlsgdnsysg 961 gttiiggtlt adhadslgtg avansgvlqv gegelentls gsgslvktgt geltlggdns 1021 ysgattitdg tliaanvnal gsgnidnsgt lildangafe lanvtthsga ttalaagstl 1081 dagqftqedg stlsidlgaa tddavitads valggtlnvt gigsvtdswt peaytytlig 1141 sdsaittdfd dltvagmnre dvdfltidgk vdeadnthyd ltaslswyad rdnattdahg 1201 tftlsdpdgs fnvaatltdv ddtldpgsrw dgksltkega gtlilsgdnd ysggttineg 1261 tlvaasttal gtglvdnnat lvldadgevs avggitthsg attqlalgts ldlgdsaliq 1321 qdgstlnvel nsdsvqplit gssatlggdl vvsdaslqar asdaefqsfk lmdmtsdisg 1381 dftsltmnlt dkpdyltvtg tinpedasey llteglswna tatsatpahg tftlgagdsf 1441 evtsvlgdkt gngdwdgksl tklgagkltl sgantysgdt nvqegtlwls gdgsigemgs 1501 qqavnvasga tfggsngttv ngkvtnegtl vfgnseetga iftlngdlin mgtmtsgsss 1561 stpgntlyvd gnytgnggsl ylntvlgddd satdklvitg dasgttdlyi ngigdgaqtt 1621 ngievvdvgg vstsdafelk nevnaglyty rlywnesdnd wylaskaqsd dddsggddtp 1681 sdggddggnv tppddggdgg nvtppddggd ggdvtppdhg gdvapqyrad igaymgnqwm 1741 arnlqmqtly dregsqyrna dgsvwarfka gkaeseavsg nidmdsnysq fqlggdilaw 1801 gngqqsvtvg vmasyinadt dstgnrgadg sqftssgnvd gynlgvyatw fadaqthsga 1861 yvdswyqygf ynnsvesgda gsesydstan avsletgyry dialsngntv sltpqaqvvw 1921 qnysadsvkd nygtridgqd gdswttrlgl rvdgklykgs rtviqpfaea nwlhtsddvs 1981 vsfddatvkq dlpanraelk vglqadidkq wsvraqvagq tgsndfgdln gslnlrynw