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LOCUS NP_463385 1169 aa linear CON 08-SEP-2022 Typhimurium str. LT2]. ACCESSION NP_463385 VERSION NP_463385.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1169) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1169) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1169) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1169) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL23344. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1169 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1169 /product="endonuclease R" /EC_number="3.1.21.3" /calculated_mol_wt=133253 Region 1..1169 /region_name="hsdR" /note="type I restriction enzyme EcoKI subunit R; Provisional; PRK11448" /db_xref="CDD:236912" CDS 1..1169 /gene="hsdR" /locus_tag="STM4526" /coded_by="complement(NC_003197.2:4780777..4784286)" /note="host restriction; similar to E. coli host restriction; endonuclease R (AAC77306.1); Blastp hit to AAC77306.1 (1188 aa), 91% identity in aa 20 - 1188" /transl_table=11 /db_xref="GeneID:1256052" CONTIG join(WP_001043485.1:1..1169) ORIGIN 1 mnksnfdflk gvndfiyaia caaennypdd pnttlikmrm fgeatakhlg qlldipacen 61 qhdllrelgk iafiddsils vfhklrrign lavhefhndl ddaqmclrlg frlsvwyyrl 121 vtkdydfpvp mfvlpehgen lyhqevltlk qqlerqaqek vqsqaeleaq qqrlvalngy 181 iailegkqqe teaqtkarla aleaqlaakd aelakqteqe rkayhkeitd qavkrtleln 241 eeesrflida qlrkagwqad sktlrfakga rpepgvnkai aewptgtdet gktgfadyvl 301 figlkpiavv eakrkntdvs sklnesyrys kyfdngflrd tllehyapde vhdavpeyei 361 swqdtsgkqr fkipfcystn greyraamkt ksgiwyrdvr httnmskalp ewhrpeelld 421 mlgsdpqkqn qwfaenpgms elglryyqed avraveqaiv ngqqhillam atgtgktrta 481 ialmfrliqs qrfkrvlflv drrslgeqal gafedtring dtfnsifdik gltdkfpeds 541 tkihvatvqs lvkrtlqsde pmpvgrydci vvdeahrgyi ldkeqtegel qfrsqldyvs 601 ayrrildhfd avkialtatp alhtvdifge pvyrytyrta vidgylidqd ppiqivtrna 661 qdgvylsege qverlnpqge lindtladdq dfevadfnrg lvipafnrav cgeltkyldp 721 tgqqktlvfc vtnahadmvv delrsafkkk ypqlehdaii kitgdadkda kkvqsmivrf 781 nkerlpnivv tvdllttgvd ipsicnivfl rkvksrilye qmkgratrlc psvgktsfki 841 fdcvdiyssl esvdtmrpvv vrpqvelqtl vneitdsety ktieadgrsf aehsheqlva 901 klqriiglai ynrdrseavd kqvrrldelc ldaagvnfgg lasrlrekgp hwsaeifnkl 961 pgfiarlerl ttdinalrea pifldiddev vsvkslygdy dtpqdfleaf dalvqhapna 1021 qpalqavinr prdltrkglv elqewfdrqh feesslrsaw katrnediaa rlighirraa 1081 vgdalkpfde rvdhalarik aendwsdeqi nwldrlaqal kekvvldddv fktgnfhrrg 1141 gkpmlqrtfd dnldsvldkf sdyiwdela