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LOCUS NP_463146 740 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_463146 VERSION NP_463146.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 740) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 740) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 740) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 740) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL23105. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..740 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..740 /product="formate-dependent nitrite reductase" /calculated_mol_wt=82320 Region 5..575 /region_name="PRK10369" /note="heme lyase subunit NrfE; Provisional" /db_xref="CDD:236675" Region 620..733 /region_name="cyt_nit_nrfF" /note="cytochrome c nitrite reductase, accessory protein NrfF; TIGR03147" /db_xref="CDD:274449" Site order(650,653) /site_type="active" /note="putative catalytic site [active]" /db_xref="CDD:319866" CDS 1..740 /gene="nrfE" /locus_tag="STM4281" /coded_by="NC_003197.2:4519848..4522070" /note="involved in attachment of haem c to cytochrome c552; similar to E. coli formate-dependent nitrite reductase; possible assembly function (AAD13457.1); Blastp hit to AAD13457.1 (552 aa), 76% identity in aa 1 - 552" /transl_table=11 /db_xref="GeneID:1255807" CONTIG join(WP_000551709.1:1..740) ORIGIN 1 mhnldiflpe agflalllsl gvnvltplat wcgmgqhwrg vmrlttcgaw taftllllaf 61 ailvscflts dfsvvyvaqh shsqlswglk laavwggheg slllwallls gwtalfawrs 121 rhesdalfpl tlsilsfima slllfivlws dpflrifppa megrdlnpml qhlglilhpp 181 llylgygglm taasvalasl lcggfnatta wvcwrwalpg wcaltlgiil gswwaycelg 241 wggwwfwdpv enasllpwla asallhslyv srqrgsfrhw slllailtli lsllgtlivr 301 sgillsvhaf aldnvravpl filfaalsla slalygwrar epypatrlgg gkcetliltt 361 lllfsavlli vlvgtlypmi yglmgwgrls vgapyfnrvt lpfgllmlvv ivlatirsrk 421 vsvrcqlpal lahtgvfifa agimvssgsr heislnlspg qqvvlagytf rferldleak 481 gnytsekari tlwrnekrig slqperrfya arrqqmmepg ihwnllhdwy avmgektgpd 541 ryamrlyvqt gvrwiwgggl lmvcgallsg wrgrkhpell pdgaalirpt sekhgrpdka 601 ftppsgktml llalliflpf athaqvvdtw tfanpqqqek alsiasqlrc pqcqnqnlle 661 snapvavsmr hqvysmvaeg kseaeitawm tdrygdfvry npplneqtll lwalpyllll 721 lvgvvawrvr krqhagegeq