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LOCUS NP_463271 1259 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_463271 VERSION NP_463271.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1259) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1259) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1259) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1259) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL23230. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1259 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1259 /product="putative periplasmic protein" /calculated_mol_wt=136092 Region 57..626 /region_name="TamB" /note="Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport]; COG2911" /db_xref="CDD:442155" Region 514..1259 /region_name="TamB" /note="Autotransporter translocation and assembly protein TamB [Intracellular trafficking, secretion, and vesicular transport]; COG2911" /db_xref="CDD:442155" CDS 1..1259 /gene="ytfN" /locus_tag="STM4410" /coded_by="NC_003197.2:4647798..4651577" /note="similar to E. coli orf, hypothetical protein (AAC77178.1); Blastp hit to AAC77178.1 (1259 aa), 86% identity in aa 1 - 1259" /transl_table=11 /db_xref="GeneID:1255936" CONTIG join(WP_000060815.1:1..1259) ORIGIN 1 mslwkkislg vlifivvlla svaflvgttt glhlvfsaan rwvpgleigq vtggwrdlsl 61 kniryeqpgv avnageihla igldclwrss lcvndlalkd invaidskkm ppsepaqeee 121 esgplnlstp wpitlsrval nninikiddt tvsvldftsg lawqeknltl kptrlqglli 181 alpkvadvaq eevvepkiek pqpdekplge tlkdlfakpv mpemtdvhlp lnlniesfrg 241 eqlritgdtd ltvrtmllkv ssidgnmkld tldidanqgt vkasgtaqla nnwpvditln 301 stlnidplkg ekiklkvgga lreqlevgvn lsgpmdvalr aqtrlaeagl plnlevvsqr 361 iawpltgdtq fqaddlklkl sgkmtdytls mrtavkgqdi ppatitldak gnerqinldk 421 ltvaalegkt elkalvdwqq aiswrgeltl ngintakeip dwpaklngvm ktkgslyggt 481 wqmdvpelkl tgnvkqnsvn vngtlkgnsy mqwtipglhf algpnsadik gelgvkelnl 541 daaidapgld nalpglggma kgivkvrgtv eapqlladit arglrwqels vaqariegdi 601 kstdqiaghl nvrverisqp dvninlvtld akgsekqhql qlrvqgepvs gqlsltgsfd 661 reaarwkgtl sdtrfqtpvg pwsltraial dyrnkeqkis igphcwlnpn aelcipqtid 721 agaagravvn lnrfdlamlk pfmpdttqas gifsgkadvs wdttqeglpq gkvtlsgrnv 781 kvtqtvndap lpvafetlnl sadlhnnrae lgwlirltnn gqfdgqvqvt dpqgrrnlgg 841 nvnmrnlnla mvnpvfsrge kaagmlnarl rlggdvqspq lfgqlqlsal didgnfmpfe 901 mqpsqltmnf sgtrstlagi vrtqqgqinl ngnadwsqid nwrarvtakg srvritvppm 961 vrldvspdvv fdatpslftl dgrvdvpwar ivvhdlpesa vgvssdvvml nndlqpetpq 1021 tasipinsnl tvhvgnnvri dafglkarlt gdlkvaqdkq glglngqini pdgrfraygq 1081 dllvrkgell fsgppdqpll nieairnpda teddviagvr vtgtadepka eifsdpampq 1141 aealsyllrg qgldsnqsds aamtsmligl gvaqsgqvvg kigetfgvsn laldtqgvgd 1201 ssqvvvsgyv lpglqvkygv gifdslatlt lryrlmpkly leavsgvdqa ldllyqfef