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LOCUS NP_461351 729 aa linear CON 08-SEP-2022 protein [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_461351 VERSION NP_461351.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 729) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 729) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 729) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 729) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21310. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..729 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..729 /product="putative diguanylate cyclase/phosphodiesterase domain 1 containing protein" /calculated_mol_wt=83066 Region 163..727 /region_name="EAL" /note="EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant) [Signal transduction mechanisms]; COG2200" /db_xref="CDD:441802" Region 495..727 /region_name="EAL" /note="EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second...; cd01948" /db_xref="CDD:238923" CDS 1..729 /gene="yfeA" /locus_tag="STM2410" /coded_by="complement(NC_003197.2:2526557..2528746)" /note="diguanylate cyclase/phosphodiesterase domain 2; similar to E. coli orf, hypothetical protein (AAC75454.1); Blastp hit to AAC75454.1 (768 aa), 68% identity in aa 45 - 766" /transl_table=11 /db_xref="GeneID:1253932" CONTIG join(WP_001112946.1:1..729) ORIGIN 1 mpdkcnvlkn ikifllafcl tvpaillsrl ispratidss yiflawlplc vmfsvlflfg 61 rrgvapmvgg mmltnewnfh lplpqamvll fcqtfpvllv caivrwqlga rwrygipnqg 121 iwlrvfwlgl mtpfgikism hlaghylafp vtistffgtg taifsivdll slisaalift 181 lffyyplrmi vsphymrifw rrdvapylak ekrlftllwf atlatllavl ctpfetkyia 241 gylvpvlfig ftigvgkisy pllnfswalt alfllsynrn flqgvgseys lafilsvlis 301 fsicllymar inqrsewlnr qwhsqaltdp ltqlpnlral eqfllqdagq svcylrmenl 361 eflsrhygmq mrvhcerevf rmlqplllek ekifhlpgse lllvltgpet earlqymlnv 421 lnnrkiywnn tgldmeygas wgtfdgrqet lqpllgqlsw laeqscshrr vlaltqsiea 481 asgqttervl rlqkirqale rgalvlyaqp irdaqgkgyd eiltrlrcdd gimmpnqfip 541 liaqfnlsir fdmqvmeall qwlsahpsae qgarfsvnlm pltllqketa srimqlfkry 601 gvppasviie iteeqafshs eismhninql rkfglkiaid dfgtgyanye rlkrlkadii 661 kidgcfvkdi ltdsldamiv ksitdlakak slsvvaefve tpaqrdlllq lgvhslqgyl 721 igrprplgk