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LOCUS NP_463313 712 aa linear CON 08-SEP-2022 enterica subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_463313 VERSION NP_463313.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 712) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 712) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 712) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 712) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL23272. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..712 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..712 /product="anaerobic ribonucleoside-triphosphate reductase" /EC_number="1.17.4.2" /calculated_mol_wt=79828 Region 1..711 /region_name="PRK09263" /note="anaerobic ribonucleoside triphosphate reductase; Provisional" /db_xref="CDD:236436" Site order(160,162..163,195..199,203,206..207,210,242,546..549, 552) /site_type="active" /note="effector binding site [active]" /db_xref="CDD:153084" Site order(175,222,290,383..384,407,544,547) /site_type="active" /db_xref="CDD:153084" Site order(644,647,662,665) /site_type="other" /note="Zn binding site [ion binding]" /db_xref="CDD:153084" Site 678..682 /site_type="active" /note="glycine loop [active]" /db_xref="CDD:153084" CDS 1..712 /gene="nrdD" /locus_tag="STM4452" /coded_by="complement(NC_003197.2:4692571..4694709)" /note="similar to E. coli anaerobic ribonucleoside-triphosphate reductase (AAC77195.1); Blastp hit to AAC77195.1 (712 aa), 96% identity in aa 1 - 712" /transl_table=11 /db_xref="GeneID:1255978" CONTIG join(WP_000187818.1:1..712) ORIGIN 1 mtphvmkrdg ckvpfkseri keailraaka agvddadyca tvaevvssqm narsqvdine 61 iqtavenqlm sgpykqlara yieyrhdrdi qrekrgrlnq eirglveqtn sallnenank 121 dskviptqrd llagivakhy arqhllprdv vqahergdih yhdldyspff pmfncmlidl 181 kgmltqgfkm gnaeieppks istatavtaq iiaqvashiy ggttinride vlapfvtesy 241 nkhrktadew qipdaegyar srtekecyda fqsleyevnt lhtangqtpf vtfgfglgts 301 wesrliqasi lrnriaglgk nrktavfpkl vfairdglnh kfgdpnydik qlalecaskr 361 mypdilnydq vvkvtgsfkt pmgcrsflgv wenengeqih dgrnnlgvis lnlprialea 421 kgdetafwkl lderlalark almtriarle gvkarvapil ymegacgvrl kadddvseif 481 kngrasislg yigihetina lfggehlyds eqlrakgiai verlrqavdq wkdetgygfs 541 lystpsenlc drfcrldtae fgvvpgvtdk gyytnsfhld vekkvnpydk idfeapyppl 601 anggficyge ypniqhnlka ledvwdysyq hvpyygtntp idecyecgft gefectskgf 661 tcpkcgnhda arvsvtrrvc gylgspdarp fnagkqeevk rrvkhlgngq ig