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LOCUS NP_461449 2435 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_461449 VERSION NP_461449.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 2435) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 2435) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 2435) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 2435) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21408. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..2435 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..2435 /product="putative outer membrane protein" /calculated_mol_wt=257468 Region 1..2435 /region_name="PRK15314" /note="outer membrane protein RatB; Provisional" /db_xref="CDD:185214" CDS 1..2435 /gene="ratB" /locus_tag="STM2514" /coded_by="complement(NC_003197.2:2634402..2641709)" /note="RatB (gi|5107806)" /transl_table=11 /db_xref="GeneID:1254036" CONTIG join(WP_000837143.1:1..2435) ORIGIN 1 mkskkcvgfl pwlllcalsl tpffaqavrs sgawqelteq taaingtppq adsvtipvyq 61 gsvqlrsdaa npvdysakps qfstsdvgsa ltltnphdte gdifavppla wqaerapavt 121 lvwadaatpd tpldpqpvsn isfcaqnlag rhlvvwsqld tstaipplwl ltrtgvpynt 181 avevldqkfa vdiapavgdp vtlaadhlde slnaakvkag esimltvttk dcggepegnv 241 dfvitrgdaq nrqgvvnnaa pvrvgntelt ttateyhgtt naegvatvvv tqangpgvkt 301 pliahpssap alkasvdvif ttltspdsss anmyghmaet statvdgasy tfyrpklaae 361 tdsedrtasi nnetwaqfnw ghadahcdil pdarqleglk iargdlattl gwpvgltsgd 421 eeywsssqgs tatdhisidm rsraltqmpd atqslvscvd kappavtpkl visadnfdst 481 vnaakvkvge einmkitvtd satnkplpyr yfnvylgdeq nrqnqknadi dsghqwtddp 541 viitnlegsd ghyhgvtdan gqfslvltqd kgagvltpvr vvlfdgteat qnviftvvts 601 pdvaqarmwg hmqgvveagn iykrpllade aaqdtgsefe nneywatfns vtaatnqcgt 661 gqvpgqllld tlyqahsgna mettygwptq khsyiaadtd gsttahvnla tgadstfsgt 721 epnylscsgn elvtsldvyf ngdeslrnav akvgeqitmn vhsvnalngl svpnasftvt 781 mshgknrdna ttgftdpsdg tlvmggtpfg ssqasmtyqg mtdaegnatl vieqpqgvgl 841 ltplsvlpvn slittpvnrs vkftvatspd tpeaqmwghm adtltvgdmk fqrpklaaea 901 taatrtqeqd netwarvsha dalnnpnagg ceaghlprad qlaalyassd gnkihtvsgw 961 pteydywsst fasaatwqav slaaggytas gdasdyvscl vsknptaasi tiepvdaalw 1021 ynansehavk vkkgdtlqlk vtvkdasgnp lpqapfvlsr gdgytrqgek hiagsgdgiv 1081 savvidgdsl ndtatkiggm tgengskiin vtrpdthgtk vaitaalydn asatasidti 1141 ftvvtspdsd kakmwghmpe tttaangevf krpllsaeia sgvthgdnte nneawgivdf 1201 emandacgag yvptladmqs lydarpggam ntqqgwpldg knyqdstadl srstqnryvk 1261 sinlrdggvg sllwneqlyf vclqnahpaa tqitltspvy ndsdgfakak vgetipviit 1321 trdaqgnpaa dtpviftrgd svgranqevn ssaaadiqin hsdgrssgan yytatgadgt 1381 ltlnisqdsg agfktpltaa iehngvtsap lpviftvvts pdtpkanywg hmaetltdss 1441 gvayrrplla sefsatpgkt ltiangyydk getwgmitvd kawngtgggc grdtlptvan 1501 lqtlygtypd namrsrngwp mtssgnnnvs rywwagdyvi ssdgtkslya avnlfndgnd 1561 vktttstsmy ymqtclaspr saaasltltl agqdettgsa kakkgeqmaa tidvkdaagq 1621 pmknvmvkis rgssynrans atssssitdd itlrnvmpsg latylldtsa kylyaqtdaq 1681 gqvtftlaqd staglkttis aatmdgsnlt dskdaiftvv tspdsdkaky wghmpetftn 1741 skgvefkrpl lraelsstad tsgytennet wytwsrypnm yqdtaspcdr lglptvndlq 1801 tlytdypnga ltttlglpva sgkywgagns vpdathsdsq fqyvrlsdnn tlttkantat 1861 aqlclakrrd lsieltssdm dadkgapvak kgeslpltvt vrdgsgtpqp ntairlgrtl 1921 sidragvvdg ssgggmvlts vapstgsmtf nctvssctsy wygitdedgk aqlevtqdds 1981 rglrtplqam lvddpltvsd mdviftvits pdsdkakywg hmpetvtnsa gvkfrrplla 2041 aemtsnsgty lvnnetwplv taantekaga tgcdaeyqpl sgdlqtlysd npngaigtny 2101 gwpvagnksw waadrapntg yyqfinlnsg gkgtasssta tgaqvclvep rtstpasitl 2161 tstamdsakn aavvakgsam pltvtvkdss gnpvanvgft lsrgdsknra gmvitdgdva 2221 adagaddlml keltpasasq smtttgivft gttgsdgtat ftlnqdkslg lktpltvkvt 2281 dnttlhasld vifmvltspd tdkalfwgnm sdttsvngkt lhrpwlqaem lsgvtpvftn 2341 gvhanneywa mahtvdntkw diakqcgsls kapdnndllt lyhsisslgw ptqgypylsk 2401 stssggmycg vdentksqnc aikpagsagy atcve