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LOCUS NP_461985 387 aa linear CON 08-SEP-2022 serovar Typhimurium str. LT2]. ACCESSION NP_461985 VERSION NP_461985.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 387) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 387) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 387) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 387) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21944. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..387 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..387 /product="phosphoglycerate kinase" /EC_number="2.7.2.3" /calculated_mol_wt=41001 Region 3..383 /region_name="pgk" /note="phosphoglycerate kinase; Provisional; PRK00073" /db_xref="CDD:234613" Site order(21,23,36,59,113) /site_type="other" /note="substrate binding site [chemical binding]" /db_xref="CDD:238195" Site order(178..181,359..361) /site_type="other" /note="hinge regions" /db_xref="CDD:238195" Site order(216,283,307,309,311..314,341..343) /site_type="other" /note="ADP binding site [chemical binding]" /db_xref="CDD:238195" Site 342 /site_type="active" /note="catalytic site [active]" /db_xref="CDD:238195" CDS 1..387 /gene="pgk" /locus_tag="STM3069" /coded_by="complement(NC_003197.2:3230698..3231861)" /note="similar to E. coli phosphoglycerate kinase (AAC75963.1); Blastp hit to AAC75963.1 (387 aa), 97% identity in aa 1 - 387" /transl_table=11 /db_xref="GeneID:1254592" CONTIG join(WP_000111274.1:1..387) ORIGIN 1 msvikmtdld lagkrvfira dlnvpvkegk vtsdariras lptielalkq gakvmvtshl 61 grptegeyne efsllpvvny lkdklsnpvr lvkdyldgvd vaegelvvle nvrfnkgekk 121 ddealskkya alcdvfvmda fgtahraqas thgigkfadv acagpllaae ldalgkalke 181 parpmvaivg gskvstkltv ldslskiadq livgggiant fvaaqghsvg kslyeadlvd 241 eakrllttcd ipvptdvrva tefsetapat lksvndvked eqildigdas aqqlaeilkn 301 aktilwngpv gvfefpnfrk gteivanaia dseafsiagg gdtlaaidlf giadkisyis 361 tgggaflefv egkvlpavam leerakk