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LOCUS NP_460985 554 aa linear CON 08-SEP-2022 enterica subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_460985 VERSION NP_460985.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 554) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 554) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 554) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 554) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20944. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..554 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..554 /product="propanediol utilization dehydratase, large subunit" /EC_number="4.2.1.30" /calculated_mol_wt=60232 Region 1..554 /region_name="pduC" /note="propanediol/glycerol family dehydratase large subunit; PRK15444" /db_xref="CDD:185341" Site order(9,12,15,19..21,23,89,93,95,119,121,124,130,157,160, 308,310..311,313..314,341,343..344,346,366,381..383, 385..386,389,392..393,405,441,443,447,524,526..527,532, 548,550) /site_type="other" /note="alpha-alpha subunit/dimer interface [polypeptide binding]" /db_xref="CDD:239658" Site order(18,26,147,177,234..235,267,270,301,304,336..337,340, 370,372,374..376) /site_type="other" /note="alpha-beta subunit interface [polypeptide binding]" /db_xref="CDD:239658" Site order(61,69,204..205,229,233,236..238,240..241,243,247, 251..252,288..291,327,471,483,493..494,497..500,503..504, 513..514,516) /site_type="other" /note="alpha-gamma subunit interface [polypeptide binding]" /db_xref="CDD:239658" Site order(141,143,170,172,202,205,221..222,234,267..268,296, 335..336,362,373..374) /site_type="active" /db_xref="CDD:239658" Site order(141,143,170,221..222,296,335..336,362) /site_type="active" /note="substrate and K+ binding site [active]" /db_xref="CDD:239658" Site order(141,170,221,296) /site_type="other" /note="K+ binding site [ion binding]" /db_xref="CDD:239658" Site order(172,202,205,222,234,267..268,336,373..374) /site_type="other" /note="cobalamin binding site [chemical binding]" /db_xref="CDD:239658" CDS 1..554 /gene="pduC" /locus_tag="STM2040" /coded_by="NC_003197.2:2117955..2119619" /note="glycerol dehydratase large subunit. (SW:DHAB_SALTY)" /transl_table=11 /db_xref="GeneID:1253561" CONTIG join(WP_001256896.1:1..554) ORIGIN 1 mrskrfeala krpvnqdgfv kewieegfia mespndpkps ikivngavte ldgkpvsefd 61 lidhfiaryg inlnraeevm amdsvklanm lcdpnvkrse ivplttamtp akivevvshm 121 nvvemmmamq kmrarrtpsq qahvtnvkdn pvqiaadaae gawrgfdeqe ttvavaryap 181 fnaiallvgs qvgrpgvltq csleeatelk lgmlghtcya etisvygtep vftdgddtpw 241 skgflassya srglkmrfts gsgsevqmgy aegksmlyle arciyitkaa gvqglqngsv 301 scigvpsavp sgiravlaen licssldlec assndqtfth sdmrrtarll mqflpgtdfi 361 ssgysavpny dnmfagsned aedfddynvi qrdlkvdggl rpvreedvia irnkaaralq 421 avfagmglpp itdeeveaat yahgskdmpe rnivedikfa qeiinknrng levvkalaqg 481 gftdvaqdml niqkakltgd ylhtsaiivg dgqvlsavnd vndyagpatg yrlqgerwee 541 iknipgaldp neid