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LOCUS NP_462508 299 aa linear CON 08-SEP-2022 subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_462508 VERSION NP_462508.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 299) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 299) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 299) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 299) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL22467. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..299 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..299 /product="putative LysR family transcriptional regulator" /calculated_mol_wt=33522 Region 6..62 /region_name="HTH_1" /note="Bacterial regulatory helix-turn-helix protein, lysR family; pfam00126" /db_xref="CDD:459683" Region 92..292 /region_name="PBP2_CrgA_like_3" /note="The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold; cd08472" /db_xref="CDD:176161" Site order(102,106,145,159,161,225,242,269) /site_type="active" /note="putative effector binding pocket [active]" /db_xref="CDD:176161" Site order(103..104,108..109,111..112,115,119,121..127,188, 219..223,230..231,234) /site_type="other" /note="putative dimerization interface [polypeptide binding]" /db_xref="CDD:176161" CDS 1..299 /gene="yhjC" /locus_tag="STM3607" /coded_by="NC_003197.2:3780713..3781612" /note="similar to E. coli putative transcriptional regulator LYSR-type (AAC76546.1); Blastp hit to AAC76546.1 (323 aa), 66% identity in aa 25 - 320" /transl_table=11 /db_xref="GeneID:1255130" CONTIG join(WP_000358042.1:1..299) ORIGIN 1 mdkiyamklf vrvaeresfs raaediglpk gsvsrqiqal ehqlgirllh rttrrvqltq 61 dgmvyyerak dllsnldele glfqpdpasi sgkirvdipp clanslimpr lptflhqypg 121 ialelcssdr qvdllredfd cvvrteplha pgiltrplgk lrrvncaspq ylarfgypen 181 lddlashamv hysltpgvss pgfafetphg mqwvktggml tvnstetwht aclaglgiiq 241 tpriavreal ragtlieilp qyraaplpvt lhyphrrnls rrvhlfmvwl tetikeaae