Gifsy-1 prophage protein [Phage Gifsy-1].

LOCUS       NP_461541                498 aa            linear   CON 08-SEP-2022
ACCESSION   NP_461541
VERSION     NP_461541.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Phage Gifsy-1
  ORGANISM  Phage Gifsy-1
            Viruses; unclassified bacterial viruses.
REFERENCE   1  (residues 1 to 498)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 498)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 498)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 498)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL21500.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Phage Gifsy-1"
                     /db_xref="taxon:129861"
     Protein         1..498
                     /product="Gifsy-1 prophage protein"
                     /calculated_mol_wt=51891
     Region          77..290
                     /region_name="S49_Sppa_36K_type"
                     /note="Signal peptide peptidase A (SppA) 36K type, a
                     serine protease, has catalytic Ser-Lys dyad; cd07022"
                     /db_xref="CDD:132933"
     Site            order(84,125,162,177,179,187..190,239,262..264,266,269)
                     /site_type="other"
                     /note="tandem repeat interface [polypeptide binding]"
                     /db_xref="CDD:132933"
     Site            order(104,111,137,203,205..209,237,241)
                     /site_type="other"
                     /note="oligomer interface [polypeptide binding]"
                     /db_xref="CDD:132933"
     Site            162
                     /site_type="active"
                     /note="active site residues [active]"
                     /db_xref="CDD:132933"
     CDS             1..498
                     /locus_tag="STM2605"
                     /coded_by="complement(NC_003197.2:2752338..2753834)"
                     /note="similar to head-tail preconnector gp5 of phage 21;
                     similar to E. coli putative protease (AAC74354.1); Blastp
                     hit to AAC74354.1 (349 aa), 27% identity in aa 124 - 300"
                     /transl_table=11
                     /db_xref="GeneID:1254128"
CONTIG      join(WP_001189503.1:1..498)
ORIGIN      
        1 mqrnlshiis qatsapllle payarvffca lgresginsl hipgnnesld qsdmalvtgd
       61 fmatgkpqar fyqvvngiav lpvtgtlvhk lggmrpfsgm tgydgvtarl qqavsdpevk
      121 gilldidspg gqaagafdca dmiyrmreqk pvwalaneta csaamllaaa cshrlvtqts
      181 rmgsigvvma htsyaeklkq egiditliys gahkadltps qklpesvyad yqqrmdeark
      241 mfaekvaryt glsvdavmat eaavydgqai ittgladgmv naadaigvma eainsnktgg
      301 tmpelsaada vtqenqrvmg ilgcpeargh ealaqmlagq pgmsvaqaks ilaaaapadt
      361 tstadrilal eeaggretla qtlaampemt veqartilaa spiaaatslh davmaldeak
      421 greelaekla vmpgmttdqa rdllaaapdk sgnaglsmnn afdafmqshs pgpisggkgh
      481 sndtettllm sipgtsat