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LOCUS NP_461630 185 aa linear CON 08-SEP-2022 ACCESSION NP_461630 VERSION NP_461630.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella virus Fels2 ORGANISM Salmonella virus Fels2 Viruses; dsDNA viruses, no RNA stage; Caudovirales; Myoviridae; Peduovirinae; P2virus. REFERENCE 1 (residues 1 to 185) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 185) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 185) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 185) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21589. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..185 /organism="Salmonella virus Fels2" /db_xref="taxon:194701" Protein 1..185 /product="Fels-2 prophage protein" /calculated_mol_wt=20771 Region 3..126 /region_name="SR_ResInv" /note="Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and...; cd03768" /db_xref="CDD:239737" Site order(7,9,64..65,68) /site_type="active" /note="catalytic residues [active]" /db_xref="CDD:239737" Site 9 /site_type="active" /note="catalytic nucleophile [active]" /db_xref="CDD:239737" Site order(63,107..108,110..111,115) /site_type="other" /note="Presynaptic Site I dimer interface [polypeptide binding]" /db_xref="CDD:239737" Site order(69,74..75,103,106..107,110..111,114,117) /site_type="other" /note="Synaptic Antiparallel dimer interface [polypeptide binding]" /db_xref="CDD:239737" Site order(92..94,103..104,107..108,111,115,118,122) /site_type="other" /note="Synaptic Flat tetramer interface [polypeptide binding]" /db_xref="CDD:239737" Site order(92,108,111,115,118,122) /site_type="other" /note="Synaptic Site I dimer interface [polypeptide binding]" /db_xref="CDD:239737" Site order(116,122..123) /site_type="DNA binding" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:239737" Region 138..177 /region_name="HTH_Hin_like" /note="Helix-turn-helix domain of Hin and related proteins; cd00569" /db_xref="CDD:259851" Site order(139..141,173..174,176..177) /site_type="DNA binding" /note="DNA-binding interface [nucleotide binding]" /db_xref="CDD:259851" CDS 1..185 /locus_tag="STM2702" /coded_by="complement(NC_003197.2:2851388..2851945)" /note="similar to te-specific recombinases; DNA invertase Pin homolog; similar to E. coli inversion of adjacent DNA; at locus of e14 element (AAC74242.1); Blastp hit to AAC74242.1 (184 aa), 88% identity in aa 3 - 180" /transl_table=11 /db_xref="GeneID:1254225" CONTIG join(WP_001165559.1:1..185) ORIGIN 1 mqigyvrvst ndqntdlqrn alncagceli fedkisgtks erpglkkllr tlsegdtlvv 61 wkldrlgrsm rhlvvlveel rerginfrsl tdsidtstsm grfffhimga laemereliv 121 ertraglaaa raqgrvggrr pkltpeqweq agrllaaget rhrvgllfdv sistlykkfp 181 vnqsr