Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_460316 546 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_460316 VERSION NP_460316.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 546) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 546) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 546) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 546) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20275. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..546 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..546 /product="plant pathogenicity factor-like protein" /calculated_mol_wt=60580 Region 2..546 /region_name="PRK06087" /note="medium-chain fatty-acid--CoA ligase" /db_xref="CDD:180393" Site order(193,196..201,203..204) /site_type="other" /note="acyl-activating enzyme (AAE) consensus motif" /db_xref="CDD:341229" Site order(196,311..312,332..337,417,429,432,443,525) /site_type="other" /note="putative AMP binding site [chemical binding]" /db_xref="CDD:341229" Site order(196,236..237,284,286..287,290,311..312,332..337,417, 429,432,440..443,506) /site_type="active" /note="putative active site [active]" /db_xref="CDD:341229" Site order(236,286..287,290,311,440..442,499,506) /site_type="other" /note="putative CoA binding site [chemical binding]" /db_xref="CDD:341229" CDS 1..546 /gene="ydiD" /locus_tag="STM1350" /coded_by="complement(NC_003197.2:1430181..1431821)" /note="similar to E. coli putative ligase/synthetase (AAC74771.1); Blastp hit to AAC74771.1 (566 aa), 82% identity in aa 19 - 560" /transl_table=11 /db_xref="GeneID:1252868" CONTIG join(WP_000117497.1:1..546) ORIGIN 1 msvtltfdaa rrktyresgy wgdaslgdyw rqtaravpdk iavvdnhgas wtyaaldyaa 61 srlanwllsq giqpgdrvaf qlpgwceftl iylaclktga vsvpllpawr eaelvwvlnk 121 cqakiffapt vfkqnrpvdl ilplqnqlrh lthivgvdkl apattalals qiidrseplq 181 sdinihgdel aavlftsgte gmpkgvmlth nnilaseray carlnltwqd vflmpaplgh 241 atgflhgvta pfligarsvl ldiftpeacl tllaqqrctc msgatpfiyd llcaieqqpa 301 dlsslrfflc ggttipkkva rdcqqrgikl lsiygstess phsmvnlgds tsrmmntdgy 361 aatgveikiv dedrntlpag hegeeasrgp nvfmgyldep eltaraldne gwyysgdlcr 421 mdedgyikit grkkdiiirg genissreve dillqhprih dacvvampde rlgerscayv 481 vlkpphlslt leeviaffsr krvakykype riviveklpr tasgkvqkfl lrqdiierlr 541 qehtav