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LOCUS NP_459283 1289 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_459283 VERSION NP_459283.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1289) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1289) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1289) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1289) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL19242. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1289 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1289 /product="putative inner membrane protein" /calculated_mol_wt=143043 Region 65..1287 /region_name="IcmF" /note="Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]; COG3523" /db_xref="CDD:442745" CDS 1..1289 /locus_tag="STM0285" /coded_by="NC_003197.2:323862..327731" /transl_table=11 /db_xref="GeneID:1251804" CONTIG join(WP_001168955.1:1..1289) ORIGIN 1 mqkflsllfs rralavvgvl vlallvwfvg plvsfdtlrp lasvgsrvvt ialllmllvl 61 wlvnwsmsii gisvlclaig fvtpllalgd vhpfaplwvr ltligfillm yalyglyrlw 121 ralrmdeqll rrflhprgee vpvageikad lrtvnhivtq airqlrqlrv dmpgwrkife 181 gkrflyelpw fmvvgspgdg kttallntgl qfplaeqmeq tsriltvpgg gtlhcdwwft 241 neavlidtag ryarhddgge asaaqrnage wqgflgllrk hrpgaplngv iltlnvadlt 301 aqspaerlaa caalrarlae lretlgirfp vylvvtkmdl lpgfseyfrt ltshlraqiw 361 gftlpysrrr kagdpqalha acaqelarlt lrldqgldtr lqeeydlksr qrlytfpref 421 aalgepllea ieqifldskf datqlnntlr gvfftsaaqa qadavadqls iwqrfvraik 481 targessasl phalpdgnrs yflhdlltqf ifreahlvep nlqwawryrl lrlgghllvl 541 vlafllwqgm qtsqqtngdy lneisaratr ldgdvkaytg kpamapvpal ldsarelsaw 601 peldpdappl awryglysvp pvtdsvasly nrlldqlllp plvkrmeyvl adaiarqdsk 661 aaydalriyl llnldkdhed kynaaeiqsw vindlgnsds vagfggraav lthiealfdg 721 srvvhspyek dealirqara fldghtster iyaralaame seapqeftlv ravgadagtv 781 fvrsngapld rgvpgiftre gyrelfdkrl pefvaaatan dgwvmgrest pkkltdslrs 841 qipgqeqsva revrrlylte yarrwqdfld sihsinsage egssglaydl qvlrtlaspd 901 splmrlgkav veqttlvppp dpqarqkqla qrasgnagkv vqtaklfqdi hpeerlektl 961 vddrfaalre viagrtdggq sgggtmqias lltmlneyyt qltiadsala agtlparita 1021 adklqleaak lpaplknill dltkqgtrki nagtgdvlnt qmeammgddc rdaidgrypf 1081 adspqevsae dfnrifasgg vldafwskql apladtasdp wrykptegnm tlqgpdltpf 1141 qqakqirsvf fnseggkkfs wsmqisvvdm dpaimelvid idgqvlryah gpdrplkvtw 1201 pgprngsmae itasprirqd tstlltggpw alfhlldagm vqetavrgrq lveydfdgrr 1261 vvleitagrd fnpvsrellq nfscparal