Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_461869 599 aa linear CON 08-SEP-2022 subsp. enterica serovar Typhimurium str. LT2]. ACCESSION NP_461869 VERSION NP_461869.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 599) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 599) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 599) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 599) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL21828. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..599 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..599 /product="sulfite reductase, beta (flavoprotein) subunit" /EC_number="1.8.1.2" /calculated_mol_wt=66353 Region 1..599 /region_name="cysJ" /note="NADPH-dependent assimilatory sulfite reductase flavoprotein subunit; PRK10953" /db_xref="CDD:182862" Site order(275,386..389,404,406,419..422) /site_type="other" /note="FAD binding pocket [chemical binding]" /db_xref="CDD:99796" Site order(386,388..389) /site_type="other" /note="FAD binding motif [chemical binding]" /db_xref="CDD:99796" Site order(389,552,597,599) /site_type="active" /note="catalytic residues [active]" /db_xref="CDD:99796" Site order(406..409,460,462,489..490,519..520,527,529,558) /site_type="other" /note="NAD binding pocket [chemical binding]" /db_xref="CDD:99796" Site order(419,422,425) /site_type="other" /note="phosphate binding motif [ion binding]" /db_xref="CDD:99796" Site order(457,461..464,466) /site_type="other" /note="beta-alpha-beta structure motif" /db_xref="CDD:99796" CDS 1..599 /gene="cysJ" /locus_tag="STM2948" /coded_by="complement(NC_003197.2:3090718..3092517)" /note="sulfite reductase [NADPH] flavoprotein alpha-component. (SW:CYSJ_SALTY)" /transl_table=11 /db_xref="GeneID:1254471" CONTIG join(WP_000210927.1:1..599) ORIGIN 1 mttpapltgl lplnpeqlar lqaattdltp eqlawvsgyf wgvlnprsga vavtpvperk 61 mprvtlisas qtgnarrvae alrddllaan lnvtlvnagd ykfkqiasek llvivtstqg 121 egeppeeava lhkflfskka pklentafav fslgdtsyef fcqsgkdfds klaelggerl 181 ldrvdadvey qaaasewrar vvdvlksrap vaapsqsvat gavndihtsp ytkdapliat 241 lsvnqkitgr nsekdvrhie idlgdsglry qpgdalgvwy qndpalvkel vellwlkgde 301 pvtvdgktlp laealewhfe ltvntanive nyatltrses llplvgdkaq lqhyaattpi 361 vdmvrfspaq ldaqalidll rpltprlysi asaqaevese vhitvgvvry diegraragg 421 assfladrve eegevrvfie hndnfrlpan petpvimigp gtgiapfrsf mqqraaegve 481 gknwlffgnp hftedflyqv ewqryvkegv lsridlawsr dqkekiyvqd klreqgaelw 541 rwindgahiy vcgdarrmaa dvekallevi aefggmdles adeylselrv erryqrdvy