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LOCUS NP_460673 865 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_460673 VERSION NP_460673.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 865) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 865) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 865) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 865) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20632. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..865 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..865 /product="DNA topoisomerase type I, omega protein" /EC_number="5.6.2.1" /calculated_mol_wt=97172 Region 2..849 /region_name="PRK07561" /note="DNA topoisomerase I subunit omega; Validated" /db_xref="CDD:236048" CDS 1..865 /gene="topA" /locus_tag="STM1714" /coded_by="complement(NC_003197.2:1809786..1812383)" /note="similar to E. coli DNA topoisomerase type I, omega protein (AAC74356.1); Blastp hit to AAC74356.1 (865 aa), 96% identity in aa 1 - 865" /transl_table=11 /db_xref="GeneID:1253233" CONTIG join(WP_000513593.1:1..865) ORIGIN 1 mgkalvives pakaktinky lgndyvvkss vghirdlpts gsaakksads tstktakkpk 61 kdergalvnr mgvdpwhnwd ahyevlpgke kvvselkqla ekadhiylat dldregeaia 121 whlreviggd darysrvvfn eitknairqa feqpgelnin rvnaqqarrf mdrvvgymvs 181 pllwkkiarg lsagrvqsva vrlvverere ikafvpeefw eidantttps gealplqvth 241 qndkpfrpvn reqtlaavsl lekarysvle redkptsskp gapfitstlq qaastrlgfg 301 vkktmmmaqr lyeagyitym rtdstnlsqd avnmvrgyig dnfgkkylpd npnqyasken 361 sqeaheairp sdvavmaesl kdmeadaqkl yqliwrqfva cqmtpaqyds ttltvgagef 421 rlkargrilr fdgwtkvmpa lrkgdedrtl pavnkgdalt lleltpaqhf tkpparfsea 481 slvkelekrg igrpstyasi istiqdrgyv rvenrrfyae kmgeivtdrl eenfrelmny 541 dftaqmedsl dqvanhqaew kavldnffsd ftqqldkaek dpeeggmrpn qmvltsidcp 601 tcgrkmgirt astgvflgcs gyalspkerc kttinlvpen evlnvlegdd aetnalrakr 661 rcqkcgtamd sylidpkrkl hvcgnnptcd gyeieegefr ikgydgpive cekcgsemhl 721 kmgrfgkyma ctndeckntr kilrngevap pkedpvplpe lpceksdayf vlrdgaagif 781 laantfpksr etraplveel yrfrdrlpek lryladapqq dpegnktvvr fsrktkqqyv 841 aaekdgkatg wsaffvdgkw vegkk