Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_460156 1067 aa linear CON 08-SEP-2022 str. LT2]. ACCESSION NP_460156 VERSION NP_460156.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1067) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1067) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1067) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1067) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20115. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1067 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1067 /product="RNase E" /EC_number="3.1.4.-" /calculated_mol_wt=119271 Region 1..1064 /region_name="rne" /note="ribonuclease E; Reviewed; PRK10811" /db_xref="CDD:236766" CDS 1..1067 /gene="rne" /locus_tag="STM1185" /coded_by="complement(NC_003197.2:1268344..1271547)" /note="similar to E. coli RNase E, membrane attachment, mRNA turnover, maturation 5S RNA (AAC74168.1); Blastp hit to AAC74168.1 (1061 aa), 82% identity in aa 1 - 1061" /transl_table=11 /db_xref="GeneID:1252703" CONTIG join(WP_000827470.1:1..1067) ORIGIN 1 mkrmlinatq qeelrvalvd gqrlydldie spgheqkkan iykgkitrie psleaafvdy 61 gaerhgflpl keiareyfpa nysahgrpni kdvlregqev ivqidkeerg nkgaalttfi 121 slagsylvlm pnnpraggis rriegddrte lkealaslel pegmglivrt agvgksaeal 181 qwdlsfrlkh weaiqkaaes rpapflihqe snvivrafrd ylrqdigeil idnpkvmema 241 rqhiaalgrp dfsskiklyt geiplfshyq iesqiesafq revrlpsggs ividstealt 301 aidinsarat rggdieetaf ntnleaadei arqlrlrdlg glividfidm tpvrhqrave 361 nrlreavrqd rariqishis rfgllemsrq rlspslgess hhvcprcsgt gtvrdnesls 421 lsilrlieee alkentqevh aivpvpiasy llnekrtavn aietrqdgvr cvivpndqme 481 tphysvlrvr kgeetptlsy mlpklheeam alpseeeyae rkrpeqpala tfampdvppa 541 ptpvepavsv atakkdnvaa aqpaqpglfs rflnalkqlf sgeetktvet aapkaeekae 601 rqqdrrkprq nnrrdrnerr dtrdnragrd ggesrddnrr nrrqtqqqna eardtrqqet 661 aekvktgdeq qqtprrersr rrnddkrqaq qevkalnree qpvqeteqee rvqqvqprrk 721 qrqlnqkvrf tnsavvetvd tpvvvdeprp venveqpvpa prtelakvdl pvvadiapeq 781 ddsveprdnt gmprrsrrsp rhlrvsgqrr rryrderypt qspmpltvac aspemasgkv 841 wirypivrpq etqvvdeqre adlalpqpvv aeqqviaata alepqasvqa venvavepqt 901 vaepqapevv evetthpevi aapvdeqpql iaesdtpvaq eviadaepva etadasitva 961 envadvvvve peeetkaeaa vvehtaeetv iapaqvveks qdvvcvddhn hasapmtrap 1021 apeyvpetph hsdwqrpsfh fegkgaaggh satrhasapa trpqpve