sigma 70 [Salmonella enterica subsp. enterica serovar Typhimurium

LOCUS       NP_462126                660 aa            linear   CON 08-SEP-2022
            str. LT2].
ACCESSION   NP_462126
VERSION     NP_462126.3
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (residues 1 to 660)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 660)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 660)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 660)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL22085.
            
            On Dec 2, 2016 this sequence version replaced NP_462126.2.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     Protein         1..660
                     /product="sigma 70"
                     /note="sigma D factor of RNA polymerase"
                     /calculated_mol_wt=75684
     Region          46..660
                     /region_name="PRK05658"
                     /note="RNA polymerase sigma factor RpoD; Validated"
                     /db_xref="CDD:235549"
     CDS             1..660
                     /gene="rpoD"
                     /locus_tag="STM3211"
                     /coded_by="NC_003197.2:3376273..3378255"
                     /note="major sigma factor during exponential growth; RNA
                     polymerase sigma factor PROD (SIGMA-70). (SW:RPSD_SALTY)"
                     /transl_table=11
                     /db_xref="GeneID:1254734"
CONTIG      join(WP_001120159.1:1..660)
ORIGIN      
        1 mphidreapd srserqrpky kyalalnvds ytvdtnqtnk cgyrlmeqnp qsqlkllvtr
       61 gkeqgyltya evndhlpedi vdsdqiedii qmindmgiqv meeapdaddl llaenttstd
      121 edaeeaaaqv lssveseigr ttdpvrmymr emgtvelltr egeidiakri edginqvqcs
      181 vaeypeaity lleqydrvea eearlsdlit gfvdpnaeee maptathvgs elsqedlddd
      241 ededeedgdd daadddnsid pelarekfae lraqyvvtrd tikakgrsha aaqeeilkls
      301 evfkqfrlvp kqfdylvnsm rvmmdrvrtq erlimklcve qckmpkknfi tlftgnetse
      361 twfnaaiamn kpwseklhdv aeevqrclqk lrqieeetgl tieqvkdinr rmsigeakar
      421 rakkemvean lrlvisiakk ytnrglqfld liqegniglm kavdkfeyrr gykfstyatw
      481 wirqaitrsi adqartirip vhmietinkl nrisrqmlqe mgreptpeel aermlmpedk
      541 irkvlkiake pismetpigd dedshlgdfi edttlelpld satteslraa thdvlaglta
      601 reakvlrmrf gidmntdhtl eevgkqfdvt rerirqieak alrklrhpsr sevlrsfldd