Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS NP_463126 5559 aa linear CON 08-SEP-2022 enterica serovar Typhimurium str. LT2]. ACCESSION NP_463126 VERSION NP_463126.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 5559) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 5559) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 5559) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 5559) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL23085. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..5559 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..5559 /product="putative inner membrane protein" /calculated_mol_wt=594779 Region 240..331 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 336..429 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region <411..930 /region_name="Ig_like_BLP2" /note="Ig-like repeat protein Blp2; NF040520" /db_xref="CDD:468522" Region 921..1019 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 1021..1121 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 1122..1223 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 1224..1320 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 1321..1422 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 1426..1520 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 1521..1622 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 1626..1720 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 1722..1821 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 1825..1918 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 1919..2020 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 2021..2118 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 2120..2221 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 2222..2319 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 2320..2421 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 2425..2519 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 2521..2622 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 2623..2719 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 2721..2821 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 2825..2918 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 2920..3020 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 3021..3117 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 3119..3220 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 3222..3323 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 3323..3420 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 3422..3519 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 3520..3617 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 3618..3716 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 3717..3813 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 3815..3909 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 3911..4008 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 4008..4110 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region <4018..4481 /region_name="Ig_like_BLP2" /note="Ig-like repeat protein Blp2; NF040520" /db_xref="CDD:468522" Region <4425..4875 /region_name="Ig_like_BLP2" /note="Ig-like repeat protein Blp2; NF040520" /db_xref="CDD:468522" Region <4844..5244 /region_name="Ig_like_BLP2" /note="Ig-like repeat protein Blp2; NF040520" /db_xref="CDD:468522" Region 5161..5256 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" Region 5258..5355 /region_name="Big_13" /note="Bacterial Ig-like domain; pfam19077" /db_xref="CDD:465968" CDS 1..5559 /locus_tag="STM4261" /coded_by="NC_003197.2:4482490..4499169" /note="fusion of two hypothetical proteins; (gi|7467255) and (gi|7467255)" /transl_table=11 /db_xref="GeneID:1255787" CONTIG join(WP_000527217.1:1..5559) ORIGIN 1 mgnksiqkff adqnsvidls slgnakgakv slsgpdmnit tprgsviivn galyssikgn 61 nlavkfkdkt itgakilgsv dlkdiqleri dsslvdsaqv ekkgngkrrn kkeeeelkkq 121 lddaenakke adkakeeaek akeaaekaln eafevqnssk qieemlqnfl adnvakdnla 181 qqsdasqqnt qakatqaskq ndaekvlpqp inkntstgks nsskneenkl daesvkeplk 241 vtlalaaesn sgskddsitn ftkpqfvgst apnatviiki ngiavgqava dslgnftfta 301 petltdgtyn leaeaktadg sgsaklviti dsvtdkptfe lspessvsgh kgltptltps 361 ivgtaeenak vdiyvdnklv asvdvdkdgn wsyefkdnel segensikvv avdkagnkne 421 ttdsiitdti apekptield dssdsgiknd nitnstlptf igvaepgstv siylglkhlg 481 evivakdgtw sytlttplkd geynitatat diaghtsata nlpftidtri syfsaeiett 541 ndsgivgdnv tnntrptftg ktepnaiisv insetgeevi fkandkgewt fnftsdsveg 601 innltftved vagnkkdfsf syvidtiapv pptvsledyv vlpngiilsg ndlpalvgta 661 epkstillmr dgklydsiev dsngtwnyqf snkflqgayd ieiisqdaag nksstvkysf 721 tiqtevvppk aeldasddsg akgdwitnkh naltllgtad rfatvnilid gktigvttad 781 adgnwnfdis rnlsdnvyki tvesidplgr tssvdyqlti dsftpiptvm lhdsadsgvk 841 gdmitkintp lftgmaeana kvsiyvdgvl sgeaiagddg vwnfqfttal sdgshdvtvk 901 vediagntas ssaynfqivt qtqkptielv ndtgvdntdh iineknpalt gtaapystvk 961 lyidgaliae vrtnkdgrwe ytlkadqglv dgdhritasv ediagniahs dpflisvdta 1021 isipivslsp dsdsgisddn ltnivkptlh lkdidpdiis vqvwdamsdt qigvatqqpd 1081 gswaytftsd lteglhqvyv kvediagnka nsaifdftid ttvstpvisl lskddtgvtg 1141 dnltninkpg faisgvdada hrvvvqvmhn gvseeielsh lngswlfipg ntwadgsytl 1201 tvkvedkagn tnysapltvv idtqiaidgv elvndsgvkg dnmtnddrph frvtvptdvn 1261 evrlsidggn swvqatpgva gsweyiwptd ladgqytltv eatdkagntv tktidfavdt 1321 tlsvpvivld saddtgiqgd nmtnstqptf alqhidddav rvtvsvehgg vtttfdatkg 1381 tggwtftppt swadgdytls vsvedkagnt shsasltvtv dtqiainnie lvndsgipdd 1441 nltnnvrphf qvtvptdvnv vrlsidggkt wfnatqsatp gvwdyiwpdd vadggytltv 1501 eatdeagnka tqtldftidt tlsvptlsld saddsgiagd nitnvktpgf tlnnidtdvs 1561 rvivevmhng ikqevplvqt ggqwrfapts dwadgdyilt vkvedragnv kqsapltvtv 1621 dthiaidrie lvndsgipgd nltnearphf qvtvpadvng vrlsidggkt wfdatqsats 1681 gvwdytwltn vangphtlmv easdkagnkt tqkldftidt ilseptitld saddsaagdn 1741 itnvkmpgft lgnidadvtk vvvtvahdgk nqqielikng gvwrftpgaa wtdgdytltv 1801 kvedkagntn ysapltvtid tqtsidriel lndtgivgdn ltnearpqfh itvptdvnsv 1861 qlsldgginw vnatltsdgv weyiwptdlv entytltvka tdvagntate tlnfiidttl 1921 stptitldsa ddsgtandnk tnvktpgfii ggidsdvtqv vvqvmrdghs eeveltqtng 1981 qwrfvpgsaw tdgdytltvt vkdeagnirh sapltvtidt qitidhielv ndsgipddnl 2041 tnnvrphfqv tvptdvnvvr lsidggktwf natqsatpgv wdytwladvg egkhtltvea 2101 tdkagnkttq qldfiidtll septivldst ddsgtkgdhl tnvnkptfll gnidadaryv 2161 tvevqhggtk evltatkdat gnwsvtptgt wadgdytltv rvedeagnek hsasltvtvd 2221 tqitidviel vndngipgdn mtndahpqfr vtvpgdvnev slsidggvtw vkatqsatpg 2281 vwnytwpgtv pdgdytlnvk atdnagntvt etlhftidtt lstpvivlds addsgvhgdn 2341 mtnhtqptfa lqhidddavr vtvsvehggv tttfdatkda ggwtftptga wadgdytlsv 2401 svedkagnts hsasltvtvd tqiainniel vndsgipddn ltnnvrphfq vtvptdvnvv 2461 rlsidggktw fnatqsatpg vwdytwladv gegkhtltve atdkagnktt qqldfiidtl 2521 lseptivldn tddsgtkgdn ltnvnkptfl lgnidadary vtvevqhggt kevltatkga 2581 tgiwsvtptg twadgdytlt vrveddagnv kysapltvtv dtqitidvie lvndngipgd 2641 nltndvrphf rvtvpgdvne vrlsidggnt wvratqgtag iwdytwpkdv tdglhtltve 2701 atdkagnktt qtldftidtr lstptiamds rddtgaigdh itsvkrpgft ignidadahs 2761 vilritqggn sqevtltqvg gqwrftpdad wadgsytltv evtdnagnvr qstplvvtvd 2821 tqtsitditl vndhgvpddn ltnstrpqfe itvpadvnsv qlsidgganw vsatqgiegv 2881 wgytwptdmg dgkhtltvmv tdragntatq tleffidtrl stptialdst ddtgtpgddm 2941 tnrtrptfil qnidsdvinv tvsvthngtt tsftatqgag gwsftppapw gdgdytltvt 3001 vedragntrp stpltvtvdt qiaidrielv ndsgvpgdnv tkhvrpqfqi svpddvekvl 3061 lsidggttwv taiksstagi wdytwptdmp egqhtltvev tdgagnkmte tlnftiditl 3121 ltptielapd qdtgqnkndn ltsvtqpvfv lgsidkdvrh velsiehngt fktvvltesa 3181 dgwryrpdsa ladgsytftv tvtdvagnqq tsaplkvtid gtlttpviel aagedsgtvg 3241 drltnhdrpv fdihqvdsdv trvmvkvtyn gktheeaavf tngqwrftps aswadgsyql 3301 avvvedlagn vkesapfevr idttttinni vllndtgvqn dqltnvakps fridvpgdvv 3361 qvrvtldgga nwnvirknad gqwifdspnt lvdgtytlrv eatdeagnia nkdlvfnidt 3421 niqvptiald agqdtganta dnitnisrpt ftignvdpdv ikvvvtidgh dynatkvgag 3481 wqftpgnaip dgsynitvtv edkagntats kplpvvidtt aeiesvtlvt dsgdsdvdni 3541 tkvdkpqfsi vtaddithvr vkidnaanwi eltkggdgrw ifnvgsalpd gqhtllvdvt 3601 diagnvaqet lqftidttlr eptivldpth dtgddtndnl trinkpvfii gnvdndvshi 3661 vvhidgrdyt ientggnltf tpdqplsdgq htisvtvtdi agntktsael rieidtqvqi 3721 dsvtlttdsg vndhdnvtna trpsfeiatp ddvtsvlvsf dgvnwtpisk naagqwefta 3781 gsalpdghyt lhvqatdrag ntanstlgft vdtqidglsv vmlddagkds tdgitnitsp 3841 rfeisarepl qsvtvilngk sstltqgagn kwlftpdtpl vdgtykieiv aediagnkis 3901 kevsftidti vsdpsidlld addtgesavd nitsvttprf vignvpadid tvviringvs 3961 ypvtangnnl wefqvpvaln dgvyeavvvf rdiagntset klpftidttt svsvrmepas 4021 dtgnsnsdnl tnkqnpkfeg taepnaklvi tivddksgre vlkqtitvga dgnwsvtpni 4081 lpdgmytinv vatdvagnta qtqerftidt vtidptirls dpsiddqhea tslrpefkgf 4141 aeafstimiq wdgkvvgsan anangewswt ppsvlapgsy vvsivakdka gnessqvdfp 4201 vvipvidvtp ptiklseesd sgalgdfttn nktptligst lpntivsiyv dgvkvgeata 4261 dtagrytfql semkdghyvv qvgivnprdn selrstavdv tidtevaelv wnisgmhegg 4321 yintvtpeig gtsepnskit ifvngvekai ayttgaghwg vvlpalgndg nyeltfkved 4381 vagnirefgp qnvildtvis pltvvlread dsgkvgdwit nkshvtidgt aeagstltir 4441 npqgvviatl vvgndgrwsa eldlregsna fvvvsedkag nsqqkeilie hdtqieisdi 4501 slsrdtnsgd kydlitnnks pvlvamtdpg atvqvyingv lqgtveasss gnisytmpan 4561 sadgeyqvqf vatdtagnrv esaittvtid sqiavfdide dslpalsnnr alsvsgvgea 4621 gsqvsifvdg klvnvvmvea dgtwrapill qddgtfnihf sitdvagnte vskdysvdvd 4681 sstdfptlnl edasnsgsld dlitnhnkpv lvgtaeagat ihiyvdekiv anvlvledgt 4741 wsyqfdnalk dgeysirvva edpagntaes prllvtidts tfidnpamva gsdngifsnd 4801 sitsqtrptf sifgemnqsv qifidgvlvd titvtdrnqv yrpesplgdg shsiyyvitd 4861 kagntatskt lnftidtfnt tpvaidsigg qtlaemtgsd gkiyitdttr nllfsgsaep 4921 nskieiiing lnvgevwvne kghwqmpvnp lyftegqldi tvkstdragn vnqekysiwv 4981 dthikvftse lddnkssskt ewwsnsdlit mrgtgeigat vslivagvtl atavvaatgr 5041 welstdklpe gtydislvie dsagnrwedv reifidrtpp napvvtysdi vndliimqgt 5101 aeaksqliit dsegntytlt vpdngkwsma ipypsegkft itsvdaignr sddvpldimk 5161 evpvislspd sdsgtvgdni trdkqptfii gnlesdvvvv qvdingtvyn aeknadgvwf 5221 ftpgtpladg sytisviasd aagnqknslp itvtidstlt vpeialaage dngasdsdnv 5281 tnhtqpkftl qhidadvtgv tvnvthngvt diyqatqgad gwtftppaaw ndgnytlsvt 5341 vvdragnsqq saslavtvds tvtvtadsqh ddasddatat avtppesetv naesathlrt 5401 epsaaeesvv kvtaysitll nadsgdeidr sisqtpsfei svpenivnvs imfegeeftl 5461 pitnqkaife vplsledgey tmdvkfidkd ndflikektf svdhssadiv namnvrgkte 5521 ddindspsts svghnnngai dvfavnevtl pvdnqeeha