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LOCUS NP_460330 1018 aa linear CON 08-SEP-2022 Typhimurium str. LT2]. ACCESSION NP_460330 VERSION NP_460330.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1018) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1018) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1018) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1018) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL20289. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1018 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1018 /product="putative oxidase" /calculated_mol_wt=113003 Region 18..542 /region_name="GlcD" /note="FAD/FMN-containing lactate dehydrogenase/glycolate oxidase [Energy production and conversion]; COG0277" /db_xref="CDD:440046" Region 495..1018 /region_name="GlpC" /note="Fe-S cluster-containing oxidoreductase, includes glycolate oxidase subunit GlcF [Energy production and conversion]; COG0247" /db_xref="CDD:440017" CDS 1..1018 /gene="ydiJ" /locus_tag="STM1365" /coded_by="NC_003197.2:1446495..1449551" /note="similar to E. coli putative oxidase (AAC74757.1); Blastp hit to AAC74757.1 (1018 aa), 88% identity in aa 1 - 1017" /transl_table=11 /db_xref="GeneID:1252883" CONTIG join(WP_000612921.1:1..1018) ORIGIN 1 mipqisqapg vvqlvlnflq aleqqgftgd tatsyadrlt mstdnsiyql lpdavvfprs 61 tadvallarl aaeprftsli ftprgggtgt ngqalnqgii vdmsrymnri ieinpeegwv 121 rveagvikdq lnqalkpygy ffapelstsn ratlggmint dasgqgslvy gktsdhvlgi 181 ravllggdil dtqsmpvela rtlgentttp griyqtvyqs clenrqlild sfpklnrflt 241 gydlrhvfnd dmtrfdltri ltgsegtlaf itearlditp ipkvrrlvnv kydsfdsalr 301 napfmvdara lsvetvdskv lnlaredivw hsvselitdv pdkemlglni vefagddeal 361 idgqvealch rldglmarae agvigwqlct dltgieriya mrkkavgllg nakgaakpip 421 faedtcvppe hladyiaefr alldghglsy gmfghvdagv lhvrpaldmc dpqqellmkq 481 isdevvalta ryggllwgeh gkgfraeysp affgevlyge lrkikaafdp hnrlnpgkic 541 ppqgieapmm kvdavkrgtw drqiplavrq twrgamecng nglcfnfdak spmcpsmkis 601 lnrihspkgr atlvrewlrl ladrgvdplk lekelpekra slrtliartr nswhkrkgey 661 dfshevkeam sgclackact tqcpikidvp efrsrflqly htrylrpvrd hlvatvetya 721 plmarapktf nffinqpvvr nlakkhigmv dlpllsapsl qqqlvghpsa nmtleqlerm 781 saeqkaktvl vvqdpftsyy darvvadfir laeklgrrpv llpfspngka qhikgflnrf 841 aktakktsef lnriaalgmp mvgvdpalvl cyrdeyklal geqrgdfhvl lvhewlaqei 901 narlsvevsg epwyffghct evtalpgapa qwaaifahfg aklenvsvgc cgmagtyghe 961 ltnhknslgi yelswhqamq rlprnrclat gyscrsqvkr iegtgvrhpl qalleiig