peptidyl prolyl isomerase [Salmonella enterica subsp. enterica

LOCUS       NP_459448                623 aa            linear   CON 08-SEP-2022
            serovar Typhimurium str. LT2].
ACCESSION   NP_459448
VERSION     NP_459448.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (residues 1 to 623)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 623)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 623)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 623)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL19407.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     Protein         1..623
                     /product="peptidyl prolyl isomerase"
                     /EC_number="5.2.1.8"
                     /calculated_mol_wt=67998
     Region          1..619
                     /region_name="PRK10788"
                     /note="periplasmic folding chaperone; Provisional"
                     /db_xref="CDD:182731"
     CDS             1..623
                     /gene="cypD"
                     /locus_tag="STM0452"
                     /coded_by="NC_003197.2:508669..510540"
                     /note="similar to E. coli putative protease maturation
                     protein (AAC73544.1); Blastp hit to AAC73544.1 (623 aa),
                     88% identity in aa 1 - 623"
                     /transl_table=11
                     /db_xref="GeneID:1251972"
CONTIG      join(WP_000969434.1:1..623)
ORIGIN      
        1 mmdslrtaan slvlkiifvi iivsfiltgv sgyliggsnn yaakvngqei sraqfenafn
       61 nernrmqqql gdryselaan egymkslrqq vlnrlideal ldqysrelkl gisdeqvkqa
      121 ifatpafqvd gkfdnnryna ivnqmgmtad qyaqalrnql ttqqlingva gtdfmlkget
      181 delaalvsqq rvvreavidv nalaakqqvt dqevssyydq nkvrfmtpeq frvsyiklda
      241 atmqapvsda diqayydqhv dqftqperir ysiiqtkted dakavldaln kgedfatlak
      301 ekstdiisar nggdmgwlee satvpelkna glkekgqisg vikssvgflv arlddiqpak
      361 vkplsevrdd iaakvkqeka ldayyalqqk vsdaasndne slagaeqvag vkavetgwfs
      421 rdtlpeelnf kpvadaifng glvgengtpg pnsdiitvdg drafvvrvse hkpeavkpla
      481 evkeqvtalv khnkaeqqak ldaekllvel kagkgaeamk aaglsfgepk tlsrtsqdpv
      541 sqaafalslp tkdkpvygva ndmqgnvvll afdevkagam peaqkkamvq gitqnnaqiv
      601 fealmsnlrk eakikigdal eqq