Gifsy-2 prophage host specificity protein J, phage lambda [Phage

LOCUS       NP_460023                815 aa            linear   CON 08-SEP-2022
            Gifsy-2].
ACCESSION   NP_460023
VERSION     NP_460023.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Phage Gifsy-2
  ORGANISM  Phage Gifsy-2
            Viruses; unclassified bacterial viruses.
REFERENCE   1  (residues 1 to 815)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 815)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 815)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 815)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL19982.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Phage Gifsy-2"
                     /db_xref="taxon:129862"
     Protein         1..815
                     /product="Gifsy-2 prophage host specificity protein J,
                     phage lambda"
                     /calculated_mol_wt=89813
     Region          216..>815
                     /region_name="COG4733"
                     /note="Phage-related protein, tail protein J [Mobilome:
                     prophages, transposons]"
                     /db_xref="CDD:443767"
     CDS             1..815
                     /locus_tag="STM1048"
                     /coded_by="NC_003197.2:1132780..1135227"
                     /transl_table=11
                     /db_xref="GeneID:1252566"
CONTIG      join(WP_001541992.1:1..815)
ORIGIN      
        1 mskgggkght preakddlks tqqlsvidal segpivgpvn glqsvlinnt pvvdadgnsn
       61 ihgvtvvyqv getpqapleg feasgaetvl gvevkhdnpv trtvvsenvd rlrftfgvqm
      121 lqettdkgdr npssvnlliq fqrsgiwnte fditingkit tqylasvvad nlpprpfsvr
      181 mvrvtpdstt drlqnktlws syteiidirq gypgtavagl lvdaeqfgsq qvtrnyhlrg
      241 rifqvpsnyd pdtrtytglw dgafkpaytn npawctmdkl thpryglgrr iggadvdkwa
      301 lyaiaqycdq pvpdgfggte prmtlnayit tqrkaydvla dfcsvmrcmp vwngrkmtfi
      361 qdrpsdkawt ytngnvvggr fkysfsalkd rhnavevryt dplngwqtst elvedhasqa
      421 rygrnllkmd afgctsrgqa hrtglwvmmt elletqtvdf svgaeglrht pgdiievcdn
      481 dyagasvggr itdldistrt ltldreitlp esgattlniv gpdgkpfste iqsqpapdrv
      541 vtkvlpetvq pysiwglklp slkrrlfrcv rikenddgty aitalqhvpe kesivdngah
      601 fdplpgttns iippavqhlt vstdndstly qakakwgtpr vvkdvrfvvr lttgsgnegd
      661 pvrlvttatt seteyafhel plgdytltvr aingygqqge pasvafsiqa peapstiemt
      721 pgyfqitvtp hqtvydasvq yefwysatql ataadiqska qylgvgsfwi kdglkplhda
      781 wfyvrsvnla gksvfaeasg rpgmtrkgiw iflrd