putative gntR family regulatory protein [Salmonella enterica subsp.

LOCUS       NP_460557                474 aa            linear   CON 08-SEP-2022
            enterica serovar Typhimurium str. LT2].
ACCESSION   NP_460557
VERSION     NP_460557.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
  ORGANISM  Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
            Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria;
            Enterobacterales; Enterobacteriaceae; Salmonella.
REFERENCE   1  (residues 1 to 474)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 474)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 474)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 474)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL20516.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Salmonella enterica subsp. enterica serovar
                     Typhimurium str. LT2"
                     /strain="LT2"
                     /serovar="Typhimurium"
                     /sub_species="enterica"
                     /culture_collection="ATCC:700720"
                     /culture_collection="SGSC:1412"
                     /type_material="type strain of Salmonella enterica"
                     /db_xref="taxon:99287"
                     /focus
     Protein         1..474
                     /product="putative gntR family regulatory protein"
                     /calculated_mol_wt=53041
     Region          1..468
                     /region_name="ARO8"
                     /note="DNA-binding transcriptional regulator, MocR family,
                     contains an aminotransferase domain [Transcription, Amino
                     acid transport and metabolism]; COG1167"
                     /db_xref="CDD:440781"
     CDS             1..474
                     /gene="ydcR"
                     /locus_tag="STM1598"
                     /coded_by="complement(NC_003197.2:1688388..1689812)"
                     /note="similar to E. coli multi modular; putative
                     transcriptional regulator; also putative ATP-binding
                     component of a transport system (AAC74521.1); Blastp hit
                     to AAC74521.1 (468 aa), 87% identity in aa 1 - 468"
                     /transl_table=11
                     /db_xref="GeneID:1253116"
CONTIG      join(WP_000760692.1:1..474)
ORIGIN      
        1 mkkyqrlaeq ireqiasgvw qpgdrlpslr eqvassgmsf mtvghayqll esqgriiarp
       61 qsgyyvaphp vcrsvataah virdeavdin tyifemlqas rdtsvvpfas afpdprlfpl
      121 pqlnrslaqv sktatamsvi enlppgnael ryaiarryaq qgitvspdei vitagaleal
      181 nlslqavtap gdwvvvenpc fygalqaler lrlkalsipt dvkegidlma leqalqeypv
      241 kacwlmtnsq nplgftlsae kkarlvallt hhnvtliedd vyselyfgre kplpakawdr
      301 ddtvlhcssf skclvpgfri gwvaggshar qiqrlqlmst lstsspmqla lvdylstrry
      361 dahlrrlrrq laerkqqawq tllrhlpaev kihhndsgyf lwlelpeqld agelsakale
      421 hlisiapgkm fstsgawtrf frfntawhwg ereeqavkql gsliremlsa kslv