Gifsy-2 prophage probable minor tail protein [Phage Gifsy-2].

LOCUS       NP_460016                995 aa            linear   CON 08-SEP-2022
ACCESSION   NP_460016
VERSION     NP_460016.1
DBLINK      BioProject: PRJNA57799
            BioSample: SAMN02604315
DBSOURCE    REFSEQ: accession NC_003197.2
KEYWORDS    RefSeq.
SOURCE      Phage Gifsy-2
  ORGANISM  Phage Gifsy-2
            Viruses; unclassified bacterial viruses.
REFERENCE   1  (residues 1 to 995)
  AUTHORS   McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W.,
            Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F.,
            Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A.,
            Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W.,
            Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K.
  TITLE     Complete genome sequence of Salmonella enterica serovar Typhimurium
            LT2
  JOURNAL   Nature 413 (6858), 852-856 (2001)
   PUBMED   11677609
REFERENCE   2  (residues 1 to 995)
  CONSRTM   NCBI Genome Project
  TITLE     Direct Submission
  JOURNAL   Submitted (08-SEP-2022) National Center for Biotechnology
            Information, NIH, Bethesda, MD 20894, USA
REFERENCE   3  (residues 1 to 995)
  AUTHORS   McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R.,
            SanMiguel,P. and Csonka,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (13-JAN-2016) Department of Microbiology and Molecular
            Genetics, University of California, Irvine, CA 92697, USA
  REMARK    Sequence update by submitter
REFERENCE   4  (residues 1 to 995)
  CONSRTM   The Salmonella typhimurium Genome Sequencing Project
  TITLE     Direct Submission
  JOURNAL   Submitted (29-MAR-2001) Genome Sequencing Center, Department of
            Genetics, Washington University School of Medicine, 4444 Forest
            Park Boulevard, St. Louis, MO 63108, USA
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence is identical to AAL19975.
            Supported by NIH grant 5U 01 AI43283
            
            Coding sequences below are predicted from manually evaluated
            computer analysis, using similarity information and the programs;
            GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and
            GeneMark; http://opal.biology.gatech.edu/GeneMark/
            
            EC numbers were kindly provided by Junko Yabuzaki and the Kyoto
            Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/,
            and Pedro Romero and Peter Karp at EcoCyc;
            http://ecocyc.PangeaSystems.com/ecocyc/
            
            The analyses of ribosome binding sites and promoter binding sites
            were kindly provided by Heladia Salgado, Julio Collado-Vides and
            ReguonDB;
            http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset
            
            This sequence was finished as follows unless otherwise noted: all
            regions were double stranded, sequenced with an alternate
            chemistries or covered by high quality data (i.e., phred quality >=
            30); an attempt was made to resolve all sequencing problems, such
            as compressions and repeats; all regions were covered by sequence
            from more than one m13 subclone.
            Method: conceptual translation.
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Phage Gifsy-2"
                     /db_xref="taxon:129862"
     Protein         1..995
                     /product="Gifsy-2 prophage probable minor tail protein"
                     /calculated_mol_wt=107794
     Region          194..391
                     /region_name="TMP_2"
                     /note="Prophage tail length tape measure protein;
                     pfam06791"
                     /db_xref="CDD:429120"
     Region          <453..759
                     /region_name="sbcc"
                     /note="exonuclease SbcC; TIGR00618"
                     /db_xref="CDD:129705"
     Region          618..957
                     /region_name="tape_meas_lam_C"
                     /note="phage tail tape measure protein, lambda family;
                     TIGR01541"
                     /db_xref="CDD:273681"
     CDS             1..995
                     /locus_tag="STM1041"
                     /coded_by="NC_003197.2:1126012..1128999"
                     /note="lambda phage H tail component homolog (gi|2232364)"
                     /transl_table=11
                     /db_xref="GeneID:1252559"
CONTIG      join(WP_010989010.1:1..995)
ORIGIN      
        1 mdssdlvekr ikrcmessar svaasaksis aamaqsqvat rtqsdamaql areanearer
       61 avdlnqklra eaaqaavvaq aqdaaaaafy rqidsvkqls gglqelqriq aqvrqakgrg
      121 disqgdylal vseaaaktre ltdaealatq kkaqfirrlk eqtavqglsr tellrvkaae
      181 lgvssaadvy irkldtatks thalglksam arreigvlig elargnfgal rgsgitlanr
      241 agwieqlmsp kgmmlgglvg gvaaavyglg kayyegakes eefnkqlilt gsyagkttgk
      301 lnemakslag ngvtqhdaag vltqvvgsga ftgqavamvs rtaarmqenv gqsvdetirq
      361 fkrlqddpvn aakeldralh fltatqleqi rvlgeqgrta daakiamsay seemnkragd
      421 vhdnlgwiek awnavgdaak wawdrmldig redtldekia tlqekiarar ktpwtvsssq
      481 teydqqqlne lqeqkrqkdl ldakaqaern yqktqkrrne qnaalnrdne teslrhqrev
      541 aritamqyad aavrnaaler enerhkkama rqkekpkayy ndeagrlllq ysqqqaqteg
      601 liaaaklstt ekmteahkql lsfqqriadl sgkkltadeq svlahkdeia lalqkldisq
      661 qdlqhqnafn elkkktltlt sqladeesrv rqqhalalat mgmgdqqrgr yeehlkiqqh
      721 yqeqleqlkr dskakgtygs deyrqaeqel qasldrrlae wadynakvda aqgdwtqgas
      781 raldnflaqg gnvagmtenv ftnafngmad sianfavtgk gsfrsltvsi ladlakmear
      841 iaaskllgsv lgmfvfgasa ggstpsgays saalsvipna dggvyrsagl sqysgsivnr
      901 ptffafarga avmgeagpea ilplrrgtdg klgvvaagsg gmamfapqyh iaisntgpel
      961 tpqalkavyd lgkkaaadfv qqqgrdggrl sgayr