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LOCUS NP_462279 1266 aa linear CON 08-SEP-2022 Typhimurium str. LT2]. ACCESSION NP_462279 VERSION NP_462279.1 DBLINK BioProject: PRJNA57799 BioSample: SAMN02604315 DBSOURCE REFSEQ: accession NC_003197.2 KEYWORDS RefSeq. SOURCE Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ORGANISM Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella. REFERENCE 1 (residues 1 to 1266) AUTHORS McClelland,M., Sanderson,K.E., Spieth,J., Clifton,S.W., Latreille,P., Courtney,L., Porwollik,S., Ali,J., Dante,M., Du,F., Hou,S., Layman,D., Leonard,S., Nguyen,C., Scott,K., Holmes,A., Grewal,N., Mulvaney,E., Ryan,E., Sun,H., Florea,L., Miller,W., Stoneking,T., Nhan,M., Waterston,R. and Wilson,R.K. TITLE Complete genome sequence of Salmonella enterica serovar Typhimurium LT2 JOURNAL Nature 413 (6858), 852-856 (2001) PUBMED 11677609 REFERENCE 2 (residues 1 to 1266) CONSRTM NCBI Genome Project TITLE Direct Submission JOURNAL Submitted (08-SEP-2022) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA REFERENCE 3 (residues 1 to 1266) AUTHORS McClelland,M., Jain,A., Saraogi,P., Mendelson,R., Westerman,R., SanMiguel,P. and Csonka,L. TITLE Direct Submission JOURNAL Submitted (13-JAN-2016) Department of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697, USA REMARK Sequence update by submitter REFERENCE 4 (residues 1 to 1266) CONSRTM The Salmonella typhimurium Genome Sequencing Project TITLE Direct Submission JOURNAL Submitted (29-MAR-2001) Genome Sequencing Center, Department of Genetics, Washington University School of Medicine, 4444 Forest Park Boulevard, St. Louis, MO 63108, USA COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final NCBI review. The reference sequence is identical to AAL22238. Supported by NIH grant 5U 01 AI43283 Coding sequences below are predicted from manually evaluated computer analysis, using similarity information and the programs; GLIMMER; http://www.tigr.org/softlab/glimmer/glimmer.html and GeneMark; http://opal.biology.gatech.edu/GeneMark/ EC numbers were kindly provided by Junko Yabuzaki and the Kyoto Encyclopedia of Genes and Genomes; http://www.genome.ad.jp/kegg/, and Pedro Romero and Peter Karp at EcoCyc; http://ecocyc.PangeaSystems.com/ecocyc/ The analyses of ribosome binding sites and promoter binding sites were kindly provided by Heladia Salgado, Julio Collado-Vides and ReguonDB; http://kinich.cifn.unam.mx:8850/db/regulondb_intro.frameset This sequence was finished as follows unless otherwise noted: all regions were double stranded, sequenced with an alternate chemistries or covered by high quality data (i.e., phred quality >= 30); an attempt was made to resolve all sequencing problems, such as compressions and repeats; all regions were covered by sequence from more than one m13 subclone. Method: conceptual translation. FEATURES Location/Qualifiers source 1..1266 /organism="Salmonella enterica subsp. enterica serovar Typhimurium str. LT2" /strain="LT2" /serovar="Typhimurium" /sub_species="enterica" /culture_collection="ATCC:700720" /culture_collection="SGSC:1412" /type_material="type strain of Salmonella enterica" /db_xref="taxon:99287" /focus Protein 1..1266 /product="putative protease" /calculated_mol_wt=138626 Region 1..422 /region_name="AsmA" /note="Uncharacterized conserved protein AsmA involved in outer membrane biogenesis [Cell wall/membrane/envelope biogenesis]; COG2982" /db_xref="CDD:442221" Region 244..1266 /region_name="PRK10899" /note="AsmA2 domain-containing protein" /db_xref="CDD:236789" CDS 1..1266 /gene="yhdP" /locus_tag="STM3369" /coded_by="complement(NC_003197.2:3535947..3539747)" /note="similar to E. coli orf, hypothetical protein (AAC76277.1); Blastp hit to AAC76277.1 (986 aa), 80% identity in aa 1 - 986" /transl_table=11 /db_xref="GeneID:1254892" CONTIG join(WP_001253500.1:1..1266) ORIGIN 1 mrrlpgilll tgaaliviaa llvsglrlal phldawrpai lnkiesvtgv pvaasqlsas 61 wqnfgptlea hnihaalkdg gelsikrvtl aldvwqsllh mrwqfrdltf wqlnfrtntp 121 lqssdgegie tsrlsdlflr qfdhfdlrds qisfltlsgq raelaipqlt wlngkerhra 181 egevslsslt gqhgvmqvrm dlrdddglln ngrvwlqadd idvkpwlgkw mqdnvalqta 241 rfslegwmtl skgeiaggdv wlkqggaswl gdntthtlsv dnltaqisre qpgwqfyipd 301 tritldgkpw psgaltvawl pqqdvggenh trsdelrira snlelaglea lrplaaklsp 361 vlgeiwqatq psgkiatlal diplqatekt rfqaswenla wkqwkllpga ehfsgtlags 421 vedgqmkvam qqakmpyetv frapleieng vatlswlkne ngfqldgrdi dvkakavhar 481 ggfrylqptg depwlgilag istddgsqaw ryfpenlmgk alvdylsgai qggeadnatl 541 vyggnphlfp ykhnegqfev lvplrnatfa fqpdwpalkn lnieldflnd glwmrsdsvd 601 lggvkaskla aaipdyskek llidadingp gkavgpyfde tplkdslgst laelqldgdv 661 narlhldipl dgeqvtaegd vslrnnslfi kplnstlknl ngkfsfvnga lksgpltanw 721 fnqplnldfs ttegakayqv avnlngnwqp trmgvlppql ndalsgsvtw ngkvgidlpy 781 hadttyhiel ngdlrnvssh lpsplnkpag eaipvniqad gnlksfaltg sagsknhfns 841 rwllnqkltl draiwttdsr tipplpaqqg velnlpaldg aqwlalfqkg aadnvsssae 901 fpqrvtlrtp alslggqqwn nlsvvsapsl ngtkieaqgr evnatllmrn hapwlaniky 961 lyynpgvakt hassptptsp lasantisfr gwpdlqlrce ecwlwgqkyg ridgdfaikg 1021 ntltlangli dtgfarlkan gewvnapgne rtslkgslhg snldtaagff gistpiqnas 1081 fnvdydlhwr nppwqpdeat lngilrtrlg kgeftdlssg hagqllrlls fdallrklrf 1141 dfrdtfsegf yfdsihstaw ikdgvlhtdd tlvdgleadi amkgsvdlvr rrldmeavva 1201 peisatvgva aafavnpivg aavfaaskvl gplwskvsil ryritgpvda pqinevlrqp 1261 rkesqq